Query 006473
Match_columns 643
No_of_seqs 411 out of 2812
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 02:00:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zgk_A Kelch-like ECH-associat 100.0 4E-44 1.4E-48 374.3 31.8 290 63-504 9-298 (308)
2 2xn4_A Kelch-like protein 2; s 100.0 2.3E-42 7.8E-47 359.3 34.4 269 81-500 15-283 (302)
3 3ii7_A Kelch-like protein 7; p 100.0 2E-42 6.9E-47 360.4 32.2 272 81-503 11-282 (306)
4 2uvk_A YJHT; unknown function, 100.0 1.6E-42 5.3E-47 369.2 31.6 306 61-503 2-352 (357)
5 4asc_A Kelch repeat and BTB do 100.0 2.2E-42 7.5E-47 362.0 31.5 278 81-502 4-286 (315)
6 2vpj_A Kelch-like protein 12; 100.0 6E-42 2.1E-46 355.7 34.1 273 81-504 14-289 (301)
7 2woz_A Kelch repeat and BTB do 100.0 4.6E-42 1.6E-46 360.1 30.3 285 66-501 6-295 (318)
8 4asc_A Kelch repeat and BTB do 100.0 1.4E-41 4.9E-46 355.9 30.0 252 63-346 30-283 (315)
9 2woz_A Kelch repeat and BTB do 100.0 3.8E-41 1.3E-45 353.1 30.1 250 64-346 42-293 (318)
10 2xn4_A Kelch-like protein 2; s 100.0 2.7E-40 9.1E-45 343.7 34.5 239 62-347 45-283 (302)
11 3ii7_A Kelch-like protein 7; p 100.0 2.6E-40 9E-45 344.4 34.3 243 61-348 38-280 (306)
12 1zgk_A Kelch-like ECH-associat 100.0 4.5E-40 1.6E-44 343.6 34.7 243 61-348 53-295 (308)
13 2vpj_A Kelch-like protein 12; 100.0 8E-39 2.7E-43 332.1 32.9 239 61-348 45-286 (301)
14 2zwa_A Leucine carboxyl methyl 100.0 1.8E-37 6.1E-42 359.3 29.9 244 63-348 383-643 (695)
15 2uvk_A YJHT; unknown function, 100.0 3E-35 1E-39 312.9 30.3 266 61-349 47-351 (357)
16 2zwa_A Leucine carboxyl methyl 100.0 1.5E-32 5E-37 318.1 25.6 242 119-499 383-641 (695)
17 1k3i_A Galactose oxidase precu 100.0 3.7E-30 1.3E-34 296.5 24.5 256 66-348 183-505 (656)
18 1k3i_A Galactose oxidase precu 99.9 1.8E-27 6.2E-32 274.0 19.8 268 103-505 168-509 (656)
19 3mbr_X Glutamine cyclotransfer 97.7 0.0027 9.4E-08 62.9 20.0 160 125-342 21-181 (243)
20 3dsm_A Uncharacterized protein 97.7 0.022 7.5E-07 58.6 27.6 193 100-344 16-216 (328)
21 3q7m_A Lipoprotein YFGL, BAMB; 97.7 0.041 1.4E-06 57.2 29.8 185 81-342 103-298 (376)
22 3q7m_A Lipoprotein YFGL, BAMB; 97.6 0.02 7E-07 59.6 26.9 193 81-345 53-265 (376)
23 3mbr_X Glutamine cyclotransfer 97.5 0.028 9.7E-07 55.6 23.8 190 70-315 22-224 (243)
24 3dsm_A Uncharacterized protein 97.5 0.039 1.3E-06 56.7 26.0 206 69-343 44-256 (328)
25 3nol_A Glutamine cyclotransfer 97.4 0.028 9.5E-07 56.2 22.6 188 72-315 46-245 (262)
26 2iwa_A Glutamine cyclotransfer 97.3 0.054 1.8E-06 54.4 24.1 202 71-340 23-237 (266)
27 3nol_A Glutamine cyclotransfer 97.2 0.0092 3.1E-07 59.7 16.5 157 128-342 46-203 (262)
28 3nok_A Glutaminyl cyclase; bet 97.2 0.024 8.2E-07 56.8 19.5 184 72-315 58-255 (268)
29 1l0q_A Surface layer protein; 97.1 0.014 4.7E-07 60.7 17.7 185 82-345 2-194 (391)
30 2ojh_A Uncharacterized protein 97.0 0.048 1.6E-06 53.2 19.8 215 72-348 45-266 (297)
31 2qc5_A Streptogramin B lactona 96.9 0.17 5.7E-06 49.9 23.2 201 70-348 21-225 (300)
32 2iwa_A Glutamine cyclotransfer 96.9 0.069 2.4E-06 53.6 20.1 158 128-342 24-183 (266)
33 1l0q_A Surface layer protein; 96.9 0.056 1.9E-06 56.0 20.2 195 72-343 35-236 (391)
34 2hqs_A Protein TOLB; TOLB, PAL 96.9 0.056 1.9E-06 57.5 20.5 206 74-348 184-395 (415)
35 3vgz_A Uncharacterized protein 96.8 0.49 1.7E-05 47.7 29.4 208 72-343 44-265 (353)
36 2z2n_A Virginiamycin B lyase; 96.8 0.14 4.7E-06 50.5 21.2 194 71-342 101-297 (299)
37 3nok_A Glutaminyl cyclase; bet 96.8 0.032 1.1E-06 55.9 15.8 155 127-342 57-212 (268)
38 2z2n_A Virginiamycin B lyase; 96.7 0.39 1.3E-05 47.1 24.0 199 71-348 17-220 (299)
39 4ery_A WD repeat-containing pr 96.7 0.19 6.5E-06 50.3 21.4 194 74-342 71-270 (312)
40 3vgz_A Uncharacterized protein 96.6 0.48 1.6E-05 47.7 24.0 184 101-345 111-308 (353)
41 1gxr_A ESG1, transducin-like e 96.6 0.11 3.9E-06 51.8 18.9 194 73-344 102-300 (337)
42 1k8k_C P40, ARP2/3 complex 41 96.5 0.1 3.4E-06 53.2 18.6 148 73-257 13-165 (372)
43 3v9f_A Two-component system se 96.5 0.22 7.6E-06 57.5 23.3 188 102-348 384-576 (781)
44 3jrp_A Fusion protein of prote 96.5 0.076 2.6E-06 54.1 17.5 191 81-341 22-241 (379)
45 3g4e_A Regucalcin; six bladed 96.5 0.49 1.7E-05 47.3 23.3 208 69-343 13-232 (297)
46 1pjx_A Dfpase, DIISOPROPYLFLUO 96.4 0.28 9.5E-06 48.8 20.3 135 72-224 21-167 (314)
47 3bws_A Protein LP49; two-domai 96.4 0.43 1.5E-05 49.9 22.6 209 81-345 180-395 (433)
48 2qc5_A Streptogramin B lactona 96.3 0.74 2.5E-05 45.0 22.7 200 71-348 64-267 (300)
49 1q7f_A NHL, brain tumor CG1071 96.3 0.97 3.3E-05 44.3 24.0 208 71-348 32-246 (286)
50 3bws_A Protein LP49; two-domai 96.3 0.37 1.3E-05 50.4 21.4 203 73-343 127-337 (433)
51 3jrp_A Fusion protein of prote 96.2 0.13 4.3E-06 52.5 17.2 201 82-350 69-298 (379)
52 1qhu_A Protein (hemopexin); be 96.2 0.24 8.2E-06 53.6 19.6 59 134-219 158-216 (460)
53 3v9f_A Two-component system se 96.1 0.27 9.2E-06 56.7 21.1 186 101-348 427-619 (781)
54 2vdu_B TRNA (guanine-N(7)-)-me 96.1 0.43 1.5E-05 50.8 21.3 160 73-285 107-275 (450)
55 1kb0_A Quinohemoprotein alcoho 96.1 0.61 2.1E-05 53.1 23.4 120 81-226 77-209 (677)
56 4a2l_A BT_4663, two-component 96.1 0.46 1.6E-05 54.9 22.8 186 102-348 428-622 (795)
57 4ery_A WD repeat-containing pr 96.1 0.54 1.8E-05 46.9 20.6 193 73-342 28-225 (312)
58 1p22_A F-BOX/WD-repeat protein 96.1 0.41 1.4E-05 50.5 20.7 185 81-342 142-327 (435)
59 2ad6_A Methanol dehydrogenase 95.9 0.63 2.1E-05 51.8 22.2 120 81-225 62-194 (571)
60 4aez_A CDC20, WD repeat-contai 95.8 0.32 1.1E-05 50.8 18.2 182 101-347 156-343 (401)
61 3ei3_B DNA damage-binding prot 95.7 0.55 1.9E-05 48.3 19.4 196 72-342 77-284 (383)
62 1rwi_B Serine/threonine-protei 95.7 0.75 2.6E-05 44.5 19.3 194 70-341 25-223 (270)
63 2ojh_A Uncharacterized protein 95.7 0.39 1.3E-05 46.5 17.3 187 100-347 21-213 (297)
64 1ri6_A Putative isomerase YBHE 95.7 0.7 2.4E-05 46.1 19.6 100 101-224 60-167 (343)
65 1gxr_A ESG1, transducin-like e 95.7 0.38 1.3E-05 47.8 17.5 194 73-343 56-258 (337)
66 1k8k_C P40, ARP2/3 complex 41 95.6 0.63 2.1E-05 47.2 19.2 206 73-349 57-285 (372)
67 1jmx_B Amine dehydrogenase; ox 95.6 2.1 7.2E-05 42.7 23.0 68 81-170 10-79 (349)
68 2dg1_A DRP35, lactonase; beta 95.6 0.53 1.8E-05 47.4 18.3 128 72-224 48-177 (333)
69 3dwl_C Actin-related protein 2 95.6 0.027 9.1E-07 58.2 8.4 141 81-257 22-169 (377)
70 2z3z_A Dipeptidyl aminopeptida 95.5 0.74 2.5E-05 51.9 21.2 195 100-342 234-437 (706)
71 2hqs_A Protein TOLB; TOLB, PAL 95.5 0.78 2.7E-05 48.5 20.0 186 101-347 159-351 (415)
72 4e54_B DNA damage-binding prot 95.4 0.098 3.3E-06 55.6 12.4 115 73-219 124-241 (435)
73 1kv9_A Type II quinohemoprotei 95.3 2.9 0.0001 47.3 25.1 119 81-225 66-196 (668)
74 1r5m_A SIR4-interacting protei 95.3 1.8 6.1E-05 44.4 21.6 193 73-342 113-321 (425)
75 2xbg_A YCF48-like protein; pho 95.3 2.9 0.0001 42.5 24.3 174 81-314 46-223 (327)
76 3zwl_B Eukaryotic translation 95.3 1.8 6.2E-05 43.3 21.2 206 73-345 37-254 (369)
77 4a2l_A BT_4663, two-component 95.3 1.9 6.4E-05 49.7 23.7 183 102-347 108-298 (795)
78 1yiq_A Quinohemoprotein alcoho 95.3 4 0.00014 46.3 26.0 118 81-224 70-200 (689)
79 3jro_A Fusion protein of prote 95.3 0.2 6.9E-06 57.7 15.3 106 81-219 20-133 (753)
80 3azo_A Aminopeptidase; POP fam 95.2 0.83 2.8E-05 51.0 20.1 206 101-346 102-331 (662)
81 3azo_A Aminopeptidase; POP fam 95.2 0.76 2.6E-05 51.4 19.6 225 73-348 134-377 (662)
82 1got_B GT-beta; complex (GTP-b 95.2 2.8 9.5E-05 42.4 22.4 136 156-342 164-303 (340)
83 3fm0_A Protein CIAO1; WDR39,SG 95.2 0.65 2.2E-05 47.4 17.5 189 72-316 20-215 (345)
84 1nir_A Nitrite reductase; hemo 95.2 2.7 9.3E-05 46.2 23.6 102 81-221 148-260 (543)
85 2aq5_A Coronin-1A; WD40 repeat 95.2 1 3.5E-05 46.7 19.3 202 83-351 145-353 (402)
86 4aez_A CDC20, WD repeat-contai 95.1 1.8 6E-05 45.0 21.1 181 101-344 113-297 (401)
87 3e5z_A Putative gluconolactona 95.1 0.97 3.3E-05 44.7 18.1 210 70-348 29-254 (296)
88 4g56_B MGC81050 protein; prote 95.1 0.49 1.7E-05 48.8 16.3 190 74-340 145-343 (357)
89 2vdu_B TRNA (guanine-N(7)-)-me 95.1 1.6 5.5E-05 46.2 20.9 65 135-221 210-274 (450)
90 2ovr_B FBW7, F-BOX/WD repeat p 95.0 2.3 8E-05 44.6 21.9 137 157-345 260-396 (445)
91 1r5m_A SIR4-interacting protei 95.0 0.78 2.7E-05 47.2 17.7 132 156-340 227-361 (425)
92 4gqb_B Methylosome protein 50; 94.9 0.87 3E-05 46.8 17.7 184 81-340 138-331 (344)
93 3vl1_A 26S proteasome regulato 94.9 3.2 0.00011 42.8 22.2 104 189-340 258-365 (420)
94 3u4y_A Uncharacterized protein 94.9 0.88 3E-05 45.5 17.3 109 81-224 9-123 (331)
95 1w6s_A Methanol dehydrogenase 94.8 1.6 5.3E-05 49.0 20.4 121 81-226 62-201 (599)
96 3scy_A Hypothetical bacterial 94.7 3 0.0001 42.3 21.2 62 274-348 235-301 (361)
97 1rwi_B Serine/threonine-protei 94.7 1.8 6.2E-05 41.7 18.4 191 72-340 70-264 (270)
98 2ovr_B FBW7, F-BOX/WD repeat p 94.6 4.1 0.00014 42.7 22.5 153 134-340 288-442 (445)
99 1qhu_A Protein (hemopexin); be 94.6 0.98 3.4E-05 48.8 17.4 59 81-166 158-216 (460)
100 3v7d_B Cell division control p 94.6 4.6 0.00016 42.4 22.9 173 81-315 279-452 (464)
101 3no2_A Uncharacterized protein 94.6 2.2 7.4E-05 42.4 19.0 185 81-342 4-197 (276)
102 3hfq_A Uncharacterized protein 94.5 0.84 2.9E-05 46.2 16.2 61 102-173 19-80 (347)
103 3mkq_A Coatomer beta'-subunit; 94.5 1.3 4.3E-05 50.6 19.5 194 73-342 60-261 (814)
104 2hes_X YDR267CP; beta-propelle 94.5 0.94 3.2E-05 45.9 16.5 195 81-340 118-328 (330)
105 1ri6_A Putative isomerase YBHE 94.5 0.77 2.6E-05 45.8 15.6 60 101-173 15-79 (343)
106 3iuj_A Prolyl endopeptidase; h 94.5 6.4 0.00022 44.5 25.1 199 101-347 155-366 (693)
107 4gga_A P55CDC, cell division c 94.4 0.88 3E-05 47.7 16.5 51 274-342 303-355 (420)
108 3ow8_A WD repeat-containing pr 94.4 3.3 0.00011 41.7 20.3 175 101-342 102-281 (321)
109 1nir_A Nitrite reductase; hemo 94.4 1.7 5.9E-05 47.8 19.4 149 156-348 248-415 (543)
110 3mkq_A Coatomer beta'-subunit; 94.3 1.1 3.7E-05 51.2 18.4 151 73-282 18-173 (814)
111 1vyh_C Platelet-activating fac 94.3 2.1 7.1E-05 44.9 19.2 140 74-257 114-257 (410)
112 3u4y_A Uncharacterized protein 94.3 2.1 7.2E-05 42.6 18.5 200 73-348 44-260 (331)
113 2aq5_A Coronin-1A; WD40 repeat 94.2 1.1 3.6E-05 46.6 16.5 155 136-348 145-309 (402)
114 3vl1_A 26S proteasome regulato 94.2 5.9 0.0002 40.7 22.3 105 81-220 108-214 (420)
115 3ow8_A WD repeat-containing pr 94.2 3.1 0.00011 41.9 19.5 163 101-316 144-311 (321)
116 1q7f_A NHL, brain tumor CG1071 94.0 4.8 0.00016 39.1 24.9 177 81-313 88-268 (286)
117 3v7d_B Cell division control p 94.0 7.1 0.00024 40.9 28.6 133 156-342 290-423 (464)
118 3scy_A Hypothetical bacterial 93.9 1.5 5.3E-05 44.5 16.8 98 102-218 30-129 (361)
119 1pby_B Quinohemoprotein amine 93.9 4.2 0.00014 40.1 19.8 109 101-223 11-129 (337)
120 1pjx_A Dfpase, DIISOPROPYLFLUO 93.9 3.3 0.00011 40.8 18.7 86 72-171 74-167 (314)
121 2z3z_A Dipeptidyl aminopeptida 93.8 3.8 0.00013 46.0 21.4 158 101-288 101-301 (706)
122 1pex_A Collagenase-3, MMP-13; 93.8 1.5 5E-05 42.1 15.1 148 81-286 33-197 (207)
123 3e5z_A Putative gluconolactona 93.8 1.8 6.3E-05 42.6 16.7 202 72-342 72-288 (296)
124 3ott_A Two-component system se 93.8 3.3 0.00011 47.3 20.9 143 134-340 482-626 (758)
125 3pe7_A Oligogalacturonate lyas 93.6 5.4 0.00018 40.6 20.5 219 81-348 46-281 (388)
126 2xdw_A Prolyl endopeptidase; a 93.6 8.7 0.0003 43.3 24.0 151 155-348 258-424 (710)
127 1p22_A F-BOX/WD-repeat protein 93.6 4.2 0.00014 42.6 19.9 172 101-340 193-365 (435)
128 3ott_A Two-component system se 93.5 2.7 9.1E-05 48.1 19.6 110 81-224 482-592 (758)
129 2xdw_A Prolyl endopeptidase; a 93.5 7.9 0.00027 43.7 23.4 218 81-347 135-376 (710)
130 3zwl_B Eukaryotic translation 93.5 3.5 0.00012 41.1 18.4 27 81-116 85-111 (369)
131 4g56_B MGC81050 protein; prote 93.4 0.5 1.7E-05 48.7 12.0 106 189-341 150-259 (357)
132 4aow_A Guanine nucleotide-bind 93.4 3 0.0001 41.3 17.5 93 209-342 195-288 (340)
133 1erj_A Transcriptional repress 93.4 6.3 0.00022 40.7 20.6 148 134-341 134-288 (393)
134 3dr2_A Exported gluconolactona 93.3 3.9 0.00013 40.6 18.4 128 70-225 46-185 (305)
135 2ecf_A Dipeptidyl peptidase IV 93.3 1.6 5.3E-05 49.5 17.0 128 68-227 36-190 (741)
136 4aow_A Guanine nucleotide-bind 93.3 1.5 5.2E-05 43.5 15.2 136 157-341 196-338 (340)
137 2pbi_B Guanine nucleotide-bind 93.3 3.7 0.00013 41.9 18.4 162 101-316 176-347 (354)
138 3fvz_A Peptidyl-glycine alpha- 93.2 7.6 0.00026 39.0 23.8 211 71-339 93-321 (329)
139 3fm0_A Protein CIAO1; WDR39,SG 93.2 2.7 9.3E-05 42.6 17.2 145 74-257 67-217 (345)
140 2p4o_A Hypothetical protein; p 93.2 7.5 0.00026 38.7 23.8 118 66-219 29-148 (306)
141 3fvz_A Peptidyl-glycine alpha- 93.2 7.9 0.00027 38.9 26.1 200 101-346 69-283 (329)
142 3iz6_a 40S ribosomal protein R 93.1 8.7 0.0003 39.4 21.2 186 101-341 180-376 (380)
143 4a11_B DNA excision repair pro 93.1 1.9 6.5E-05 44.0 16.0 50 274-341 316-366 (408)
144 4gqb_B Methylosome protein 50; 93.1 1.8 6.3E-05 44.3 15.7 146 134-342 138-291 (344)
145 1flg_A Protein (quinoprotein e 93.0 5.5 0.00019 44.2 20.5 116 81-224 68-201 (582)
146 4a11_B DNA excision repair pro 93.0 1.2 4E-05 45.6 14.1 151 134-342 111-278 (408)
147 3jro_A Fusion protein of prote 93.0 0.67 2.3E-05 53.2 13.3 198 82-348 67-294 (753)
148 1got_B GT-beta; complex (GTP-b 93.0 8.5 0.00029 38.7 21.7 188 81-342 66-259 (340)
149 3hfq_A Uncharacterized protein 93.0 3.4 0.00012 41.5 17.4 172 71-289 143-327 (347)
150 3c5m_A Oligogalacturonate lyas 92.7 1.9 6.6E-05 43.9 15.3 213 101-348 168-392 (396)
151 4gga_A P55CDC, cell division c 92.7 5.6 0.00019 41.4 19.2 94 101-220 125-220 (420)
152 3b7f_A Glycosyl hydrolase, BNR 92.6 11 0.00038 39.0 21.5 196 70-313 56-297 (394)
153 2ynn_A Coatomer subunit beta'; 92.5 3.7 0.00013 40.7 16.8 142 73-257 18-164 (304)
154 2ghs_A AGR_C_1268P; regucalcin 92.5 9.6 0.00033 38.3 22.9 121 71-224 51-174 (326)
155 1yfq_A Cell cycle arrest prote 92.5 5.8 0.0002 39.3 18.2 109 73-218 16-131 (342)
156 1sq9_A Antiviral protein SKI8; 92.4 10 0.00035 38.4 21.8 69 134-220 197-269 (397)
157 1erj_A Transcriptional repress 92.4 4.7 0.00016 41.7 18.0 111 73-221 128-241 (393)
158 3g4e_A Regucalcin; six bladed 92.4 4.4 0.00015 40.2 17.0 151 101-286 73-234 (297)
159 2pbi_B Guanine nucleotide-bind 92.3 5.2 0.00018 40.7 18.0 136 156-342 176-317 (354)
160 1npe_A Nidogen, entactin; glyc 92.2 8.7 0.0003 37.1 25.4 198 72-344 39-242 (267)
161 2hes_X YDR267CP; beta-propelle 92.2 4.9 0.00017 40.4 17.4 158 134-348 118-288 (330)
162 4e54_B DNA damage-binding prot 92.2 1.4 4.7E-05 46.6 13.6 53 102-166 188-241 (435)
163 1vyh_C Platelet-activating fac 92.2 6.2 0.00021 41.1 18.7 64 134-221 203-268 (410)
164 1qks_A Cytochrome CD1 nitrite 91.9 8.2 0.00028 42.7 20.0 106 208-348 319-434 (567)
165 3b7f_A Glycosyl hydrolase, BNR 91.9 7 0.00024 40.6 18.6 194 102-348 32-270 (394)
166 3dwl_C Actin-related protein 2 91.7 0.7 2.4E-05 47.2 10.4 113 73-218 60-177 (377)
167 2dg1_A DRP35, lactonase; beta 91.7 3.6 0.00012 41.1 15.6 99 101-218 112-213 (333)
168 2pm7_B Protein transport prote 91.7 2.5 8.5E-05 41.8 14.2 111 74-219 15-133 (297)
169 3dm0_A Maltose-binding peripla 91.7 7.3 0.00025 43.7 19.8 94 209-343 541-635 (694)
170 3odt_A Protein DOA1; ubiquitin 91.7 7.3 0.00025 37.8 17.6 186 81-342 28-216 (313)
171 2bkl_A Prolyl endopeptidase; m 91.6 7.4 0.00025 43.8 19.7 200 101-346 147-357 (695)
172 3pe7_A Oligogalacturonate lyas 91.6 4.9 0.00017 40.8 16.8 205 101-343 168-387 (388)
173 1sq9_A Antiviral protein SKI8; 91.5 13 0.00044 37.6 22.3 70 245-342 197-269 (397)
174 2ynn_A Coatomer subunit beta'; 91.5 7.7 0.00026 38.3 17.7 189 81-342 66-261 (304)
175 1yr2_A Prolyl oligopeptidase; 91.5 15 0.0005 41.7 22.1 197 81-315 173-382 (741)
176 3i2n_A WD repeat-containing pr 91.4 4.5 0.00015 40.2 16.0 196 73-340 23-243 (357)
177 1pgu_A Actin interacting prote 91.4 5.8 0.0002 43.0 18.0 150 137-340 175-328 (615)
178 1kb0_A Quinohemoprotein alcoho 91.4 5.9 0.0002 44.9 18.4 124 130-288 73-208 (677)
179 1yiq_A Quinohemoprotein alcoho 91.3 11 0.00036 42.8 20.5 123 131-288 67-201 (689)
180 4ggc_A P55CDC, cell division c 91.2 5.3 0.00018 39.0 16.0 25 81-114 78-102 (318)
181 3ei3_B DNA damage-binding prot 91.2 4.6 0.00016 41.1 16.0 92 101-218 141-236 (383)
182 3c5m_A Oligogalacturonate lyas 91.1 7.1 0.00024 39.6 17.4 113 208-348 167-281 (396)
183 2bkl_A Prolyl endopeptidase; m 91.0 4.7 0.00016 45.5 17.3 151 155-348 251-405 (695)
184 3odt_A Protein DOA1; ubiquitin 91.0 12 0.0004 36.2 20.2 105 189-345 195-301 (313)
185 1pgu_A Actin interacting prote 91.0 7.2 0.00025 42.2 18.3 28 72-111 22-49 (615)
186 2xyi_A Probable histone-bindin 91.0 0.92 3.2E-05 47.9 10.6 22 189-219 243-264 (430)
187 3gre_A Serine/threonine-protei 91.0 13 0.00045 38.4 19.7 66 134-221 181-248 (437)
188 1itv_A MMP9; adaptive molecula 90.8 4.4 0.00015 38.2 14.1 145 81-283 16-176 (195)
189 1yr2_A Prolyl oligopeptidase; 90.8 9.7 0.00033 43.3 19.7 173 71-289 270-449 (741)
190 1pex_A Collagenase-3, MMP-13; 90.7 2 6.9E-05 41.1 11.7 104 81-221 79-195 (207)
191 2ecf_A Dipeptidyl peptidase IV 90.7 12 0.00039 42.1 20.2 110 157-288 264-375 (741)
192 3i2n_A WD repeat-containing pr 90.7 3.8 0.00013 40.8 14.5 105 81-218 128-243 (357)
193 2pm9_A Protein WEB1, protein t 90.7 4 0.00014 41.8 15.0 150 135-341 178-338 (416)
194 3sfz_A APAF-1, apoptotic pepti 90.6 1.8 6.2E-05 52.3 14.0 187 81-342 972-1160(1249)
195 1kv9_A Type II quinohemoprotei 90.5 13 0.00045 41.9 20.3 123 130-288 62-196 (668)
196 1pby_B Quinohemoprotein amine 90.5 11 0.00038 36.9 17.7 123 72-222 37-167 (337)
197 2xbg_A YCF48-like protein; pho 90.5 16 0.00055 36.8 23.4 182 102-348 16-201 (327)
198 3hrp_A Uncharacterized protein 90.4 19 0.00066 37.6 23.3 209 71-348 133-362 (409)
199 3f3f_A Nucleoporin SEH1; struc 90.3 14 0.00048 35.9 21.4 111 74-219 17-144 (351)
200 2ad6_A Methanol dehydrogenase 90.2 12 0.00042 41.2 19.3 124 130-288 58-194 (571)
201 3f3f_A Nucleoporin SEH1; struc 90.1 14 0.00049 35.8 21.5 29 306-348 317-346 (351)
202 2pm9_A Protein WEB1, protein t 90.1 6.7 0.00023 40.1 16.1 206 73-342 72-296 (416)
203 4h5i_A Guanine nucleotide-exch 89.9 19 0.00063 36.8 21.5 185 101-341 157-344 (365)
204 3k26_A Polycomb protein EED; W 89.7 5.7 0.0002 39.5 14.9 140 101-282 44-193 (366)
205 1qks_A Cytochrome CD1 nitrite 89.4 29 0.00099 38.2 24.3 191 81-342 166-375 (567)
206 1xfd_A DIP, dipeptidyl aminope 89.3 3.4 0.00012 46.4 14.1 113 102-227 38-152 (723)
207 3lrv_A PRE-mRNA-splicing facto 89.2 19 0.00066 35.9 19.3 104 189-341 138-245 (343)
208 2fp8_A Strictosidine synthase; 89.1 11 0.00037 37.7 16.5 112 101-224 40-180 (322)
209 1yfq_A Cell cycle arrest prote 89.0 18 0.00063 35.4 19.3 111 72-218 60-179 (342)
210 3bg1_A Protein SEC13 homolog; 88.8 3.4 0.00011 41.3 12.3 112 81-224 24-143 (316)
211 3sfz_A APAF-1, apoptotic pepti 88.8 9.7 0.00033 45.8 18.4 139 74-257 621-766 (1249)
212 1jmx_B Amine dehydrogenase; ox 88.7 2.7 9.4E-05 41.8 11.6 68 134-223 10-79 (349)
213 3no2_A Uncharacterized protein 88.6 19 0.00067 35.3 20.0 181 70-313 38-230 (276)
214 2pm7_B Protein transport prote 88.3 17 0.00058 35.6 17.1 72 246-348 219-294 (297)
215 4d9s_A UVB-resistance protein 88.2 13 0.00045 38.9 17.0 17 298-314 338-355 (406)
216 3o4h_A Acylamino-acid-releasin 88.2 28 0.00097 37.7 20.4 138 156-344 90-231 (582)
217 3iuj_A Prolyl endopeptidase; h 88.1 30 0.001 38.8 21.0 149 156-348 259-413 (693)
218 3o4h_A Acylamino-acid-releasin 87.1 12 0.00042 40.7 16.6 96 103-222 134-231 (582)
219 1w6s_A Methanol dehydrogenase 86.8 16 0.00054 40.7 17.2 124 130-288 58-200 (599)
220 1gen_A Gelatinase A; hydrolase 86.6 13 0.00044 35.7 14.3 104 81-219 40-154 (218)
221 1itv_A MMP9; adaptive molecula 86.2 4.6 0.00016 38.1 10.7 103 81-220 64-176 (195)
222 2xyi_A Probable histone-bindin 86.0 8.7 0.0003 40.1 14.1 63 134-218 243-309 (430)
223 2gop_A Trilobed protease; beta 85.9 29 0.00098 34.3 18.3 195 99-347 41-258 (347)
224 3dm0_A Maltose-binding peripla 85.8 35 0.0012 38.0 19.8 52 156-220 541-594 (694)
225 3bg1_A Protein SEC13 homolog; 85.7 9.8 0.00033 37.8 13.7 30 306-349 273-303 (316)
226 3ba0_A Macrophage metalloelast 85.6 9.1 0.00031 39.9 13.6 152 81-287 190-356 (365)
227 3iz6_a 40S ribosomal protein R 85.6 21 0.00072 36.4 16.6 141 156-342 180-331 (380)
228 4h5i_A Guanine nucleotide-exch 85.5 26 0.00088 35.6 17.2 101 134-257 230-335 (365)
229 3c7x_A Matrix metalloproteinas 85.2 20 0.00069 33.6 14.7 101 81-219 15-128 (196)
230 4d9s_A UVB-resistance protein 85.2 37 0.0013 35.4 18.4 17 298-314 286-303 (406)
231 3mmy_A MRNA export factor; mRN 85.0 31 0.0011 33.9 18.3 105 82-220 54-162 (368)
232 3hxj_A Pyrrolo-quinoline quino 84.3 32 0.0011 33.6 17.6 90 101-224 117-211 (330)
233 3kci_A Probable E3 ubiquitin-p 84.2 19 0.00065 37.4 15.5 17 71-89 117-133 (389)
234 1su3_A Interstitial collagenas 83.7 14 0.00047 39.7 14.2 148 81-286 272-437 (450)
235 3ju4_A Endo-N-acetylneuraminid 83.5 47 0.0016 34.8 17.4 217 110-338 269-512 (670)
236 2p4o_A Hypothetical protein; p 83.3 37 0.0013 33.5 20.6 95 102-218 96-198 (306)
237 2hz6_A Endoplasmic reticulum t 83.2 0.38 1.3E-05 50.2 1.7 53 101-170 19-75 (369)
238 2fp8_A Strictosidine synthase; 83.0 39 0.0013 33.4 19.0 215 72-340 83-313 (322)
239 3hxj_A Pyrrolo-quinoline quino 82.6 18 0.00062 35.5 14.1 90 103-224 80-173 (330)
240 1xfd_A DIP, dipeptidyl aminope 82.5 16 0.00056 40.7 15.2 88 72-173 64-151 (723)
241 1hxn_A Hemopexin, HPX; heme, b 82.3 11 0.00037 36.3 11.5 101 81-218 28-144 (219)
242 2oaj_A Protein SNI1; WD40 repe 81.6 69 0.0024 37.3 20.5 110 72-221 21-132 (902)
243 3mmy_A MRNA export factor; mRN 81.5 24 0.00083 34.7 14.6 144 135-341 54-200 (368)
244 3dr2_A Exported gluconolactona 81.2 37 0.0013 33.3 15.8 108 102-220 108-226 (305)
245 3c7x_A Matrix metalloproteinas 80.8 12 0.00041 35.2 11.1 102 81-220 61-177 (196)
246 3lrv_A PRE-mRNA-splicing facto 80.6 48 0.0016 32.9 19.2 103 82-220 139-246 (343)
247 3ba0_A Macrophage metalloelast 80.5 16 0.00054 38.0 13.0 108 81-223 236-355 (365)
248 3k26_A Polycomb protein EED; W 80.3 47 0.0016 32.6 16.5 106 190-341 85-193 (366)
249 1su3_A Interstitial collagenas 80.0 17 0.0006 38.8 13.4 151 129-345 267-437 (450)
250 2ghs_A AGR_C_1268P; regucalcin 80.0 51 0.0017 32.8 20.6 96 102-217 110-209 (326)
251 4a5s_A Dipeptidyl peptidase 4 80.0 55 0.0019 36.8 18.5 81 74-173 67-149 (740)
252 3oyo_A Hemopexin fold protein 79.5 25 0.00084 33.8 13.1 105 133-280 69-197 (225)
253 3gre_A Serine/threonine-protei 79.2 48 0.0016 34.0 16.5 68 81-170 181-250 (437)
254 1gen_A Gelatinase A; hydrolase 79.0 7.3 0.00025 37.4 9.1 102 81-219 87-203 (218)
255 3dw8_B Serine/threonine-protei 78.1 63 0.0022 32.9 17.8 30 72-112 32-61 (447)
256 1flg_A Protein (quinoprotein e 78.1 86 0.0029 34.4 19.7 74 130-225 64-145 (582)
257 3of7_A Regulator of chromosome 77.3 73 0.0025 33.9 17.6 19 180-198 265-284 (473)
258 3dw8_B Serine/threonine-protei 77.1 67 0.0023 32.7 20.4 27 245-287 353-379 (447)
259 2ymu_A WD-40 repeat protein; u 76.6 83 0.0028 33.4 18.8 105 189-344 437-543 (577)
260 1k32_A Tricorn protease; prote 76.1 1.3E+02 0.0043 35.4 20.7 106 102-224 359-467 (1045)
261 3hrp_A Uncharacterized protein 75.4 81 0.0028 32.7 17.8 150 134-341 141-299 (409)
262 1k32_A Tricorn protease; prote 74.5 36 0.0012 40.2 15.4 148 101-288 317-468 (1045)
263 4ggc_A P55CDC, cell division c 74.4 62 0.0021 31.0 21.3 57 101-170 45-103 (318)
264 2mad_H Methylamine dehydrogena 73.0 87 0.003 32.0 25.3 55 271-344 297-354 (373)
265 3frx_A Guanine nucleotide-bind 72.3 77 0.0026 31.1 20.2 144 81-283 76-229 (319)
266 2xzm_R RACK1; ribosome, transl 71.9 81 0.0028 31.2 18.1 25 81-114 87-111 (343)
267 3oyo_A Hemopexin fold protein 71.2 24 0.00082 33.9 10.5 59 134-217 127-197 (225)
268 3lp9_A LS-24; SEED albumin, pl 71.0 3.8 0.00013 39.8 4.7 61 134-219 129-202 (227)
269 3mvd_K Regulator of chromosome 70.9 96 0.0033 32.2 16.3 63 71-141 137-204 (423)
270 2p9w_A MAL S 1 allergenic prot 70.1 60 0.002 33.2 13.6 147 73-256 141-306 (334)
271 2hz6_A Endoplasmic reticulum t 68.0 2.5 8.5E-05 43.9 2.8 52 156-222 19-74 (369)
272 2gop_A Trilobed protease; beta 68.0 94 0.0032 30.4 19.4 106 100-225 151-258 (347)
273 1npe_A Nidogen, entactin; glyc 66.8 89 0.003 29.6 21.7 159 72-287 82-244 (267)
274 3m0c_C LDL receptor, low-densi 65.8 1.9E+02 0.0065 33.1 26.2 177 101-341 446-633 (791)
275 2ymu_A WD-40 repeat protein; u 65.5 1.4E+02 0.0049 31.5 20.0 169 102-341 326-499 (577)
276 1z68_A Fibroblast activation p 65.4 41 0.0014 37.4 12.6 81 73-173 64-147 (719)
277 2xe4_A Oligopeptidase B; hydro 65.3 1.1E+02 0.0036 34.8 16.2 98 155-279 294-398 (751)
278 3frx_A Guanine nucleotide-bind 65.2 1.1E+02 0.0036 30.0 18.8 52 156-220 176-229 (319)
279 1n7d_A LDL receptor, low-densi 64.9 44 0.0015 37.7 12.7 200 70-342 407-616 (699)
280 2xe4_A Oligopeptidase B; hydro 64.5 1.6E+02 0.0055 33.2 17.5 98 100-216 294-398 (751)
281 2xzm_R RACK1; ribosome, transl 62.7 1.2E+02 0.0042 29.8 18.9 62 134-218 87-149 (343)
282 1z68_A Fibroblast activation p 61.8 1.9E+02 0.0066 31.8 17.9 112 101-225 224-353 (719)
283 1nr0_A Actin interacting prote 61.2 1.9E+02 0.0064 31.4 21.8 181 101-344 170-359 (611)
284 3lp9_A LS-24; SEED albumin, pl 60.8 16 0.00055 35.2 6.9 20 189-219 129-148 (227)
285 1jof_A Carboxy-CIS,CIS-muconat 56.6 1.6E+02 0.0055 29.3 21.0 16 101-116 167-183 (365)
286 3v64_C Agrin; beta propeller, 56.0 1.7E+02 0.0059 29.4 26.1 176 101-341 95-276 (349)
287 1hxn_A Hemopexin, HPX; heme, b 55.4 48 0.0016 31.7 9.2 61 81-165 72-144 (219)
288 2ece_A 462AA long hypothetical 54.0 2.3E+02 0.0078 30.2 17.8 123 81-219 95-238 (462)
289 1nr0_A Actin interacting prote 53.7 2.4E+02 0.0083 30.5 21.0 155 81-287 201-361 (611)
290 2p9w_A MAL S 1 allergenic prot 53.7 1.9E+02 0.0066 29.3 23.2 152 101-283 35-217 (334)
291 1ijq_A LDL receptor, low-densi 53.6 1.7E+02 0.0059 28.7 26.9 200 70-342 31-240 (316)
292 3a0f_A Xyloglucanase; beta-pro 53.3 2.9E+02 0.0099 31.2 21.2 185 71-289 77-292 (763)
293 1ijq_A LDL receptor, low-densi 52.1 1.8E+02 0.0063 28.6 27.6 174 101-340 10-195 (316)
294 3v65_B Low-density lipoprotein 50.7 2.2E+02 0.0075 29.0 26.5 178 101-341 138-319 (386)
295 3v65_B Low-density lipoprotein 50.4 2.2E+02 0.0075 29.0 26.0 174 101-340 96-277 (386)
296 2mad_H Methylamine dehydrogena 48.0 2.4E+02 0.0081 28.7 18.1 76 189-287 278-356 (373)
297 1ofz_A Fucose-specific lectin; 46.2 2.4E+02 0.0083 28.2 17.4 186 104-345 90-300 (312)
298 1ck7_A Protein (gelatinase A); 46.2 84 0.0029 35.0 10.5 102 81-219 453-567 (631)
299 1sqj_A OXG-RCBH, oligoxylogluc 44.5 4E+02 0.014 30.2 23.3 238 69-347 64-340 (789)
300 1ofz_A Fucose-specific lectin; 43.7 2.6E+02 0.009 28.0 16.4 118 113-251 153-279 (312)
301 4hvt_A Ritya.17583.B, post-pro 43.6 3.9E+02 0.014 30.0 15.9 106 101-222 269-385 (711)
302 3sjl_D Methylamine dehydrogena 42.4 1.9E+02 0.0065 29.9 12.1 125 134-286 44-174 (386)
303 4a5s_A Dipeptidyl peptidase 4 42.3 1.4E+02 0.0046 33.5 11.9 69 156-225 36-108 (740)
304 3ju4_A Endo-N-acetylneuraminid 41.7 3.3E+02 0.011 28.6 17.5 211 58-279 273-512 (670)
305 3mvd_K Regulator of chromosome 41.1 3.1E+02 0.011 28.1 16.8 18 298-315 303-321 (423)
306 3qhy_B Beta-lactamase inhibito 40.0 2.7E+02 0.0093 27.0 15.3 19 180-198 149-167 (282)
307 1ck7_A Protein (gelatinase A); 38.9 26 0.0009 39.1 5.0 60 134-219 548-616 (631)
308 3m0c_C LDL receptor, low-densi 38.4 4.9E+02 0.017 29.6 27.6 175 101-341 404-590 (791)
309 3v64_C Agrin; beta propeller, 37.2 3.3E+02 0.011 27.2 26.2 174 101-340 53-234 (349)
310 3kci_A Probable E3 ubiquitin-p 35.6 3.7E+02 0.013 27.3 16.5 18 180-197 167-185 (389)
311 1n7d_A LDL receptor, low-densi 33.3 2.1E+02 0.0072 32.0 11.5 139 101-284 475-617 (699)
312 3vu4_A KMHSV2; beta-propeller 33.3 3.6E+02 0.012 26.5 20.1 60 134-219 70-129 (355)
313 3p5b_L Low density lipoprotein 32.2 4.2E+02 0.014 27.0 25.5 177 101-341 134-321 (400)
314 2cn3_A Xyloglucanase, beta-1,4 32.2 5.7E+02 0.02 28.5 18.2 86 165-253 231-321 (737)
315 3k6s_A Integrin alpha-X; cell 31.1 5.3E+02 0.018 30.6 14.8 159 69-244 334-509 (1095)
316 2be1_A Serine/threonine-protei 30.9 79 0.0027 32.3 6.7 108 156-287 20-138 (339)
317 3of7_A Regulator of chromosome 30.5 4.9E+02 0.017 27.2 18.4 18 70-89 76-93 (473)
318 2iu1_A EIF5, eukaryotic transl 29.6 18 0.00063 34.4 1.5 8 506-513 149-156 (208)
319 4a0p_A LRP6, LRP-6, low-densit 28.3 6.2E+02 0.021 27.7 25.3 181 70-313 38-224 (628)
320 4hvt_A Ritya.17583.B, post-pro 28.1 5.6E+02 0.019 28.7 13.8 153 156-348 269-437 (711)
321 2cn3_A Xyloglucanase, beta-1,4 26.3 7.1E+02 0.024 27.7 22.2 85 218-314 231-321 (737)
322 2be1_A Serine/threonine-protei 26.1 1.8E+02 0.0061 29.6 8.4 105 101-224 20-138 (339)
323 3a0f_A Xyloglucanase; beta-pro 25.9 7.4E+02 0.025 27.8 24.7 228 72-348 24-292 (763)
324 3tc9_A Hypothetical hydrolase; 25.8 5.6E+02 0.019 26.3 12.9 143 72-254 140-290 (430)
325 2j04_A TAU60, YPL007P, hypothe 24.5 7.2E+02 0.025 27.2 16.7 64 134-219 96-161 (588)
326 2oit_A Nucleoporin 214KDA; NH2 24.3 5.9E+02 0.02 26.1 17.9 60 190-280 162-222 (434)
327 2oiz_A Aromatic amine dehydrog 23.5 5.5E+02 0.019 25.4 19.6 234 66-342 48-338 (361)
328 2oit_A Nucleoporin 214KDA; NH2 23.1 6.2E+02 0.021 25.9 18.0 59 135-217 162-222 (434)
329 3c75_H MADH, methylamine dehyd 22.9 5.8E+02 0.02 26.5 12.0 144 134-312 84-244 (426)
330 1qey_A MNT-C, protein (regulat 22.3 14 0.00049 23.4 -0.5 13 600-612 19-31 (31)
331 3sjl_D Methylamine dehydrogena 21.5 2.9E+02 0.0099 28.5 9.1 76 189-287 291-369 (386)
332 1a12_A RCC1, regulator of chro 20.3 6.8E+02 0.023 25.3 19.9 65 70-142 120-190 (413)
No 1
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=4e-44 Score=374.31 Aligned_cols=290 Identities=18% Similarity=0.254 Sum_probs=242.1
Q ss_pred CCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeC
Q 006473 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGG 142 (643)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG 142 (643)
.+-|.+|..|+++.+ ++.||||||. ++ ..++++++||+.+++|..++. .|.+|.+|+++++++.||||||
T Consensus 9 ~~~~~~~~~~~~~~~---~~~i~v~GG~--~~---~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG 78 (308)
T 1zgk_A 9 HSSGLVPRGSHAPKV---GRLIYTAGGY--FR---QSLSYLEAYNPSNGTWLRLAD--LQVPRSGLAGCVVGGLLYAVGG 78 (308)
T ss_dssp ------------CCC---CCCEEEECCB--SS---SBCCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECC
T ss_pred ccCCeeeCCccccCC---CCEEEEEeCc--CC---CCcceEEEEcCCCCeEeECCC--CCcccccceEEEECCEEEEECC
Confidence 456788999999988 8999999996 22 367899999999999999965 5789999999999999999999
Q ss_pred ccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceE
Q 006473 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (643)
Q Consensus 143 ~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (643)
....... ...++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||.... ..++++++||+.+++|+
T Consensus 79 ~~~~~~~--~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~~~~W~ 150 (308)
T 1zgk_A 79 RNNSPDG--NTDSSALDCYNPMTNQWSPCAP--MSVPRNRIGVGVIDGHIYAVGGSHGC----IHHNSVERYEPERDEWH 150 (308)
T ss_dssp EEEETTE--EEECCCEEEEETTTTEEEECCC--CSSCCBTCEEEEETTEEEEECCEETT----EECCCEEEEETTTTEEE
T ss_pred CcCCCCC--CeecceEEEECCCCCeEeECCC--CCcCccccEEEEECCEEEEEcCCCCC----cccccEEEECCCCCeEe
Confidence 7421111 2357999999999999999987 89999999999999999999998753 36899999999999999
Q ss_pred EeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEE
Q 006473 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (643)
Q Consensus 223 ~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~ 302 (643)
.++++ |.+|.+|++++++++|||+||+... ..++++++||+.+++|+.+.. +|.+|.+|++
T Consensus 151 ~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~ 211 (308)
T 1zgk_A 151 LVAPM-----LTRRIGVGVAVLNRLLYAVGGFDGT-----------NRLNSAECYYPERNEWRMITA---MNTIRSGAGV 211 (308)
T ss_dssp ECCCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTTEEEECCC---CSSCCBSCEE
T ss_pred ECCCC-----CccccceEEEEECCEEEEEeCCCCC-----------CcCceEEEEeCCCCeEeeCCC---CCCccccceE
Confidence 99877 8899999999999999999998765 347899999999999999975 4789999999
Q ss_pred EEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhh
Q 006473 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEE 382 (643)
Q Consensus 303 ~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (643)
++++++||||||... ...++++++||+.+++|..+..
T Consensus 212 ~~~~~~iyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~---------------------------------- 248 (308)
T 1zgk_A 212 CVLHNCIYAAGGYDG---------QDQLNSVERYDVETETWTFVAP---------------------------------- 248 (308)
T ss_dssp EEETTEEEEECCBCS---------SSBCCCEEEEETTTTEEEECCC----------------------------------
T ss_pred EEECCEEEEEeCCCC---------CCccceEEEEeCCCCcEEECCC----------------------------------
Confidence 999999999999864 2347999999999999998764
Q ss_pred cccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeee
Q 006473 383 FDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVG 462 (643)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~ 462 (643)
+|.+|+++++++.
T Consensus 249 -------------------------------------------------------------------~p~~r~~~~~~~~ 261 (308)
T 1zgk_A 249 -------------------------------------------------------------------MKHRRSALGITVH 261 (308)
T ss_dssp -------------------------------------------------------------------CSSCCBSCEEEEE
T ss_pred -------------------------------------------------------------------CCCCccceEEEEE
Confidence 6999999999999
Q ss_pred cCeEEEecceEeecCeEEeecceeccccCCccceEEeccCCc
Q 006473 463 KDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASE 504 (643)
Q Consensus 463 ~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~k~d~w~~i~~~~~ 504 (643)
++.|||+||... ...++++|.||+.+ +.|+.+-+.+.
T Consensus 262 ~~~i~v~GG~~~----~~~~~~v~~yd~~~-~~W~~~~~~p~ 298 (308)
T 1zgk_A 262 QGRIYVLGGYDG----HTFLDSVECYDPDT-DTWSEVTRMTS 298 (308)
T ss_dssp TTEEEEECCBCS----SCBCCEEEEEETTT-TEEEEEEECSS
T ss_pred CCEEEEEcCcCC----CcccceEEEEcCCC-CEEeecCCCCC
Confidence 999999999742 23589999999999 99999966543
No 2
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.3e-42 Score=359.28 Aligned_cols=269 Identities=18% Similarity=0.289 Sum_probs=236.3
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
++.||||||.. . ..++++++||+.+++|..++. .|.+|.+|+++++++.||||||.... ..++++|+
T Consensus 15 ~~~i~v~GG~~--~---~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~~~~ 81 (302)
T 2xn4_A 15 PKLMVVVGGQA--P---KAIRSVECYDFKEERWHQVAE--LPSRRCRAGMVYMAGLVFAVGGFNGS------LRVRTVDS 81 (302)
T ss_dssp CEEEEEECCBS--S---SBCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEESCBCSS------SBCCCEEE
T ss_pred CCEEEEECCCC--C---CCCCcEEEEcCcCCcEeEccc--CCcccccceEEEECCEEEEEeCcCCC------ccccceEE
Confidence 68999999952 2 257899999999999999965 57899999999999999999998643 24689999
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (643)
||+.+++|+.+++ +|.+|.+|++++++++||||||.... ..++++++||+.+++|+.++++ |.+|.+|+
T Consensus 82 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 150 (302)
T 2xn4_A 82 YDPVKDQWTSVAN--MRDRRSTLGAAVLNGLLYAVGGFDGS----TGLSSVEAYNIKSNEWFHVAPM-----NTRRSSVG 150 (302)
T ss_dssp EETTTTEEEEECC--CSSCCBSCEEEEETTEEEEEEEECSS----CEEEEEEEEETTTTEEEEECCC-----SSCCBSCE
T ss_pred ECCCCCceeeCCC--CCccccceEEEEECCEEEEEcCCCCC----ccCceEEEEeCCCCeEeecCCC-----CCcccCce
Confidence 9999999999987 89999999999999999999998653 3589999999999999999877 88999999
Q ss_pred EEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecccccccc
Q 006473 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (643)
Q Consensus 241 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~ 320 (643)
+++++++|||+||+... ....++++++||+.+++|+.+.. .|.+|.+|++++++++||||||...
T Consensus 151 ~~~~~~~iyv~GG~~~~---------~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~--- 215 (302)
T 2xn4_A 151 VGVVGGLLYAVGGYDVA---------SRQCLSTVECYNATTNEWTYIAE---MSTRRSGAGVGVLNNLLYAVGGHDG--- 215 (302)
T ss_dssp EEEETTEEEEECCEETT---------TTEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBSS---
T ss_pred EEEECCEEEEEeCCCCC---------CCccccEEEEEeCCCCcEEECCC---CccccccccEEEECCEEEEECCCCC---
Confidence 99999999999998754 12467899999999999999965 4789999999999999999999864
Q ss_pred CccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhh
Q 006473 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (643)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (643)
..+.+++++||+.+++|..+..
T Consensus 216 ------~~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 237 (302)
T 2xn4_A 216 ------PLVRKSVEVYDPTTNAWRQVAD---------------------------------------------------- 237 (302)
T ss_dssp ------SSBCCCEEEEETTTTEEEEECC----------------------------------------------------
T ss_pred ------CcccceEEEEeCCCCCEeeCCC----------------------------------------------------
Confidence 2457899999999999998764
Q ss_pred cccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEE
Q 006473 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEI 480 (643)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~ 480 (643)
+|.+|.+|++++.++.|||+||.... .
T Consensus 238 -------------------------------------------------~~~~r~~~~~~~~~~~i~v~GG~~~~----~ 264 (302)
T 2xn4_A 238 -------------------------------------------------MNMCRRNAGVCAVNGLLYVVGGDDGS----C 264 (302)
T ss_dssp -------------------------------------------------CSSCCBSCEEEEETTEEEEECCBCSS----S
T ss_pred -------------------------------------------------CCCccccCeEEEECCEEEEECCcCCC----c
Confidence 68999999999999999999997422 2
Q ss_pred eecceeccccCCccceEEec
Q 006473 481 TLDDLYSLNLSKLDEWKCII 500 (643)
Q Consensus 481 tl~D~~~ldl~k~d~w~~i~ 500 (643)
.++++|.||+.+ +.|+.+.
T Consensus 265 ~~~~v~~yd~~~-~~W~~~~ 283 (302)
T 2xn4_A 265 NLASVEYYNPTT-DKWTVVS 283 (302)
T ss_dssp BCCCEEEEETTT-TEEEECS
T ss_pred ccccEEEEcCCC-CeEEECC
Confidence 489999999999 9999986
No 3
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=2e-42 Score=360.37 Aligned_cols=272 Identities=17% Similarity=0.226 Sum_probs=237.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
.+.||+|||.. . .+++++||+.+++|..++. .|.+|.+|+++++++.||||||.. . ..++++|+
T Consensus 11 ~~~l~~~GG~~--~-----~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~-~------~~~~~~~~ 74 (306)
T 3ii7_A 11 HDYRIALFGGS--Q-----PQSCRYFNPKDYSWTDIRC--PFEKRRDAACVFWDNVVYILGGSQ-L------FPIKRMDC 74 (306)
T ss_dssp CCEEEEEECCS--S-----TTSEEEEETTTTEEEECCC--CSCCCBSCEEEEETTEEEEECCBS-S------SBCCEEEE
T ss_pred cceEEEEeCCC--C-----CceEEEecCCCCCEecCCC--CCcccceeEEEEECCEEEEEeCCC-C------CCcceEEE
Confidence 47899999942 1 6899999999999999975 478999999999999999999986 1 25799999
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (643)
||+.+++|+.+++ +|.+|.+|++++++++||||||.... ...++++++||+.+++|+.++++ |.+|.+|+
T Consensus 75 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 144 (306)
T 3ii7_A 75 YNVVKDSWYSKLG--PPTPRDSLAACAAEGKIYTSGGSEVG---NSALYLFECYDTRTESWHTKPSM-----LTQRCSHG 144 (306)
T ss_dssp EETTTTEEEEEEC--CSSCCBSCEEEEETTEEEEECCBBTT---BSCCCCEEEEETTTTEEEEECCC-----SSCCBSCE
T ss_pred EeCCCCeEEECCC--CCccccceeEEEECCEEEEECCCCCC---CcEeeeEEEEeCCCCceEeCCCC-----cCCcceeE
Confidence 9999999999977 89999999999999999999998632 33689999999999999999877 88999999
Q ss_pred EEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecccccccc
Q 006473 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (643)
Q Consensus 241 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~ 320 (643)
++.++++|||+||.... ...+..++++++||+.+++|+.+.. .|.+|.+|++++++++||||||...
T Consensus 145 ~~~~~~~iyv~GG~~~~-------~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~--- 211 (306)
T 3ii7_A 145 MVEANGLIYVCGGSLGN-------NVSGRVLNSCEVYDPATETWTELCP---MIEARKNHGLVFVKDKIFAVGGQNG--- 211 (306)
T ss_dssp EEEETTEEEEECCEESC-------TTTCEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCEET---
T ss_pred EEEECCEEEEECCCCCC-------CCcccccceEEEeCCCCCeEEECCC---ccchhhcceEEEECCEEEEEeCCCC---
Confidence 99999999999998754 1112458999999999999999975 4789999999999999999999865
Q ss_pred CccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhh
Q 006473 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (643)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (643)
...++++++||+.+++|..+..
T Consensus 212 ------~~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 233 (306)
T 3ii7_A 212 ------LGGLDNVEYYDIKLNEWKMVSP---------------------------------------------------- 233 (306)
T ss_dssp ------TEEBCCEEEEETTTTEEEECCC----------------------------------------------------
T ss_pred ------CCCCceEEEeeCCCCcEEECCC----------------------------------------------------
Confidence 2347899999999999998754
Q ss_pred cccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEE
Q 006473 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEI 480 (643)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~ 480 (643)
+|.+|..+++++.++.|||+||.... .
T Consensus 234 -------------------------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~----~ 260 (306)
T 3ii7_A 234 -------------------------------------------------MPWKGVTVKCAAVGSIVYVLAGFQGV----G 260 (306)
T ss_dssp -------------------------------------------------CSCCBSCCEEEEETTEEEEEECBCSS----S
T ss_pred -------------------------------------------------CCCCccceeEEEECCEEEEEeCcCCC----e
Confidence 69999999999999999999998532 2
Q ss_pred eecceeccccCCccceEEeccCC
Q 006473 481 TLDDLYSLNLSKLDEWKCIIPAS 503 (643)
Q Consensus 481 tl~D~~~ldl~k~d~w~~i~~~~ 503 (643)
.++++|.||+.+ +.|+.+.+.+
T Consensus 261 ~~~~~~~yd~~~-~~W~~~~~~~ 282 (306)
T 3ii7_A 261 RLGHILEYNTET-DKWVANSKVR 282 (306)
T ss_dssp BCCEEEEEETTT-TEEEEEEEEE
T ss_pred eeeeEEEEcCCC-CeEEeCCCcc
Confidence 588999999999 9999986544
No 4
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=1.6e-42 Score=369.17 Aligned_cols=306 Identities=19% Similarity=0.251 Sum_probs=240.0
Q ss_pred ccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECC--CCcEEEecCCCCC-CCceeeEEEEECCEE
Q 006473 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKVISSPNSP-PPRSAHQAVSWKNYL 137 (643)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~--~~~W~~l~s~~~P-~pRs~ha~~~~~~~i 137 (643)
..+++|.+|.+|+++++ +++||||||.. .+++|+||+. +++|+.+++ .| .+|++|++++++++|
T Consensus 2 ~l~~lP~~r~~~~~~~~---~~~iyv~GG~~--------~~~~~~~d~~~~~~~W~~~~~--~p~~~R~~~~~~~~~~~l 68 (357)
T 2uvk_A 2 VLPETPVPFKSGTGAID---NDTVYIGLGSA--------GTAWYKLDTQAKDKKWTALAA--FPGGPRDQATSAFIDGNL 68 (357)
T ss_dssp CSCCCSSCCCSCEEEEE---TTEEEEECGGG--------TTCEEEEETTSSSCCEEECCC--CTTCCCBSCEEEEETTEE
T ss_pred CCCCCCccccceEEEEE---CCEEEEEeCcC--------CCeEEEEccccCCCCeeECCC--CCCCcCccceEEEECCEE
Confidence 45678999999999998 89999999952 2489999998 499999976 46 789999999999999
Q ss_pred EEEeCccC-CCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCC-------------
Q 006473 138 YIFGGEFT-SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLR------------- 203 (643)
Q Consensus 138 yvfGG~~~-~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~------------- 203 (643)
|||||... ... ....++++|+||+.+++|+.+.+.+ |.+|.+|++++++++||||||......
T Consensus 69 yv~GG~~~~~~~--~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 145 (357)
T 2uvk_A 69 YVFGGIGKNSEG--LTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKD 145 (357)
T ss_dssp EEECCEEECTTS--CEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTC
T ss_pred EEEcCCCCCCCc--cceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCc
Confidence 99999822 111 1346899999999999999998833 599999999999999999999753210
Q ss_pred -----------------ceeeeccEEEEEcCCCceEEeccCCCCCCCCC-ccceeEEEeCCEEEEEcCCCCCCCCccCCC
Q 006473 204 -----------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP-RSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (643)
Q Consensus 204 -----------------~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~-R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~ 265 (643)
...+++++++||+.+++|+.+.++ |.+ |.+|++++++++|||+||....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-----p~~~~~~~~~~~~~~~iyv~GG~~~~-------- 212 (357)
T 2uvk_A 146 STAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGES-----PWYGTAGAAVVNKGDKTWLINGEAKP-------- 212 (357)
T ss_dssp HHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEEC-----SSCCCBSCEEEEETTEEEEECCEEET--------
T ss_pred ccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCC-----CCCCcccccEEEECCEEEEEeeecCC--------
Confidence 012468999999999999999877 554 5559999999999999998654
Q ss_pred CCCceeeeEEEEeC--CCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCcc--------ccccccCCcEEE
Q 006473 266 EKGIIHSDLWSLDP--RTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGD--------VIMSLFLNELYG 335 (643)
Q Consensus 266 ~~~~~~~dv~~yd~--~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~--------~~~~~~~ndl~~ 335 (643)
+...+++|+||+ .+++|+.+..+ ..|.+|.+|++++++++||||||......... ......++++++
T Consensus 213 --~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 289 (357)
T 2uvk_A 213 --GLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDI 289 (357)
T ss_dssp --TEECCCEEEEECC---CEEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEE
T ss_pred --CcccCceEEEEecCCCCcEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEE
Confidence 356788999986 99999999875 23556788999999999999999864211000 000123478999
Q ss_pred EECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcc
Q 006473 336 FQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNS 415 (643)
Q Consensus 336 yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (643)
||+.+++|..+..
T Consensus 290 yd~~~~~W~~~~~------------------------------------------------------------------- 302 (357)
T 2uvk_A 290 HLWHNGKWDKSGE------------------------------------------------------------------- 302 (357)
T ss_dssp EECC---CEEEEE-------------------------------------------------------------------
T ss_pred EecCCCceeeCCC-------------------------------------------------------------------
Confidence 9999999999865
Q ss_pred eeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecceeccccCCccc
Q 006473 416 VIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDE 495 (643)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~k~d~ 495 (643)
+|.+|++|++++.++.||||||....+ ..++|+|.|++.. +.
T Consensus 303 ----------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~~---~~~~~v~~l~~~~-~~ 344 (357)
T 2uvk_A 303 ----------------------------------LSQGRAYGVSLPWNNSLLIIGGETAGG---KAVTDSVLITVKD-NK 344 (357)
T ss_dssp ----------------------------------CSSCCBSSEEEEETTEEEEEEEECGGG---CEEEEEEEEEC-C-CS
T ss_pred ----------------------------------CCCCcccceeEEeCCEEEEEeeeCCCC---CEeeeEEEEEEcC-cE
Confidence 699999999999999999999987544 3489999999998 89
Q ss_pred eEEeccCC
Q 006473 496 WKCIIPAS 503 (643)
Q Consensus 496 w~~i~~~~ 503 (643)
|.++.+..
T Consensus 345 ~~~~~~~~ 352 (357)
T 2uvk_A 345 VTVQNLEH 352 (357)
T ss_dssp CEEEC---
T ss_pred eEeeeccc
Confidence 99887654
No 5
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=2.2e-42 Score=362.05 Aligned_cols=278 Identities=22% Similarity=0.392 Sum_probs=235.4
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
.+.||+||| +++++||+.+++|.. +.++.|.+|.+|+++++++.||||||.............+++|+
T Consensus 4 ~~~l~~~GG-----------~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 71 (315)
T 4asc_A 4 QDLIFMISE-----------EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQ 71 (315)
T ss_dssp EEEEEEEET-----------TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEE
T ss_pred ceEEEEEcC-----------CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEE
Confidence 468999999 489999999999997 44545789999999999999999999743211111234677999
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (643)
||+.+++|+.+++ +|.+|.+|++++++++||||||..... ....++++++||+.+++|+.++++ |.+|++|+
T Consensus 72 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 143 (315)
T 4asc_A 72 FDHLDSEWLGMPP--LPSPRCLFGLGEALNSIYVVGGREIKD-GERCLDSVMCYDRLSFKWGESDPL-----PYVVYGHT 143 (315)
T ss_dssp EETTTTEEEECCC--BSSCEESCEEEEETTEEEEECCEESST-TCCBCCCEEEEETTTTEEEECCCC-----SSCCBSCE
T ss_pred ecCCCCeEEECCC--CCcchhceeEEEECCEEEEEeCCcCCC-CCcccceEEEECCCCCcEeECCCC-----CCccccee
Confidence 9999999999977 899999999999999999999986321 134689999999999999999877 88999999
Q ss_pred EEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecccccccc
Q 006473 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (643)
Q Consensus 241 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~ 320 (643)
++.++++|||+||+... ...++++++||+.+++|+.+..+ |.+|.+|++++++++||||||...
T Consensus 144 ~~~~~~~iyv~GG~~~~----------~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~--- 207 (315)
T 4asc_A 144 VLSHMDLVYVIGGKGSD----------RKCLNKMCVYDPKKFEWKELAPM---QTARSLFGATVHDGRIIVAAGVTD--- 207 (315)
T ss_dssp EEEETTEEEEECCBCTT----------SCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEEEEECS---
T ss_pred EEEECCEEEEEeCCCCC----------CcccceEEEEeCCCCeEEECCCC---CCchhceEEEEECCEEEEEeccCC---
Confidence 99999999999998433 35788999999999999999754 789999999999999999999865
Q ss_pred CccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhh
Q 006473 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (643)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (643)
....+++++||+.+++|..++.
T Consensus 208 ------~~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 229 (315)
T 4asc_A 208 ------TGLTSSAEVYSITDNKWAPFEA---------------------------------------------------- 229 (315)
T ss_dssp ------SSEEEEEEEEETTTTEEEEECC----------------------------------------------------
T ss_pred ------CCccceEEEEECCCCeEEECCC----------------------------------------------------
Confidence 2357899999999999998864
Q ss_pred cccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEee----c
Q 006473 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEI----N 476 (643)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~----g 476 (643)
+|.+|..|++++.++.|||+||.... +
T Consensus 230 -------------------------------------------------~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~ 260 (315)
T 4asc_A 230 -------------------------------------------------FPQERSSLSLVSLVGTLYAIGGFATLETESG 260 (315)
T ss_dssp -------------------------------------------------CSSCCBSCEEEEETTEEEEEEEEEEEECTTS
T ss_pred -------------------------------------------------CCCcccceeEEEECCEEEEECCccccCcCCc
Confidence 69999999999999999999998643 1
Q ss_pred Ce-EEeecceeccccCCccceEEeccC
Q 006473 477 DQ-EITLDDLYSLNLSKLDEWKCIIPA 502 (643)
Q Consensus 477 ~~-e~tl~D~~~ldl~k~d~w~~i~~~ 502 (643)
.. ...++|+|.||+.+ +.|+.+.+.
T Consensus 261 ~~~~~~~~~v~~yd~~~-~~W~~~~~~ 286 (315)
T 4asc_A 261 ELVPTELNDIWRYNEEE-KKWEGVLRE 286 (315)
T ss_dssp CEEEEEEEEEEEEETTT-TEEEEEESC
T ss_pred cccccccCcEEEecCCC-ChhhhhccC
Confidence 11 14589999999999 999999443
No 6
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=6e-42 Score=355.69 Aligned_cols=273 Identities=19% Similarity=0.317 Sum_probs=238.8
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
++.||||||.... ...++++++||+.+++|..++. .|.+|.+|+++++++.||||||.... ..++++|+
T Consensus 14 ~~~i~~~GG~~~~---~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~l~v~GG~~~~------~~~~~~~~ 82 (301)
T 2vpj_A 14 NEVLLVVGGFGSQ---QSPIDVVEKYDPKTQEWSFLPS--ITRKRRYVASVSLHDRIYVIGGYDGR------SRLSSVEC 82 (301)
T ss_dssp CEEEEEECCEETT---TEECCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCSS------CBCCCEEE
T ss_pred CCEEEEEeCccCC---CcceeEEEEEcCCCCeEEeCCC--CChhhccccEEEECCEEEEEcCCCCC------ccCceEEE
Confidence 6899999994222 2468999999999999999975 56899999999999999999998632 25789999
Q ss_pred EECCCCc---EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcc
Q 006473 161 LDLKTNQ---WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (643)
Q Consensus 161 yD~~t~~---W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (643)
||+.+++ |+.+.+ +|.+|.+|++++++++||||||.... ..++++++||+.+++|+.++++ |.+|.
T Consensus 83 ~d~~~~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~----~~~~~~~~~d~~~~~W~~~~~~-----p~~r~ 151 (301)
T 2vpj_A 83 LDYTADEDGVWYSVAP--MNVRRGLAGATTLGDMIYVSGGFDGS----RRHTSMERYDPNIDQWSMLGDM-----QTARE 151 (301)
T ss_dssp EETTCCTTCCCEEECC--CSSCCBSCEEEEETTEEEEECCBCSS----CBCCEEEEEETTTTEEEEEEEC-----SSCCB
T ss_pred EECCCCCCCeeEECCC--CCCCccceeEEEECCEEEEEcccCCC----cccceEEEEcCCCCeEEECCCC-----CCCcc
Confidence 9999999 999976 89999999999999999999998753 2488999999999999999887 88999
Q ss_pred ceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccc
Q 006473 238 GFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVD 317 (643)
Q Consensus 238 ~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~ 317 (643)
+|++++++++|||+||+... ..++++++||+.+++|+.+.. .|.+|.+|++++++++||||||...
T Consensus 152 ~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~ 217 (301)
T 2vpj_A 152 GAGLVVASGVIYCLGGYDGL-----------NILNSVEKYDPHTGHWTNVTP---MATKRSGAGVALLNDHIYVVGGFDG 217 (301)
T ss_dssp SCEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBCS
T ss_pred cceEEEECCEEEEECCCCCC-----------cccceEEEEeCCCCcEEeCCC---CCcccccceEEEECCEEEEEeCCCC
Confidence 99999999999999998765 467899999999999999965 4789999999999999999999865
Q ss_pred cccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhh
Q 006473 318 MEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEE 397 (643)
Q Consensus 318 ~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (643)
....+++++||+.+++|..+..
T Consensus 218 ---------~~~~~~v~~yd~~~~~W~~~~~------------------------------------------------- 239 (301)
T 2vpj_A 218 ---------TAHLSSVEAYNIRTDSWTTVTS------------------------------------------------- 239 (301)
T ss_dssp ---------SSBCCCEEEEETTTTEEEEECC-------------------------------------------------
T ss_pred ---------CcccceEEEEeCCCCcEEECCC-------------------------------------------------
Confidence 2347899999999999998764
Q ss_pred hhhcccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecC
Q 006473 398 ADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEIND 477 (643)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~ 477 (643)
+|.+|..|++++.++.|||+||....
T Consensus 240 ----------------------------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~-- 265 (301)
T 2vpj_A 240 ----------------------------------------------------MTTPRCYVGATVLRGRLYAIAGYDGN-- 265 (301)
T ss_dssp ----------------------------------------------------CSSCCBSCEEEEETTEEEEECCBCSS--
T ss_pred ----------------------------------------------------CCCcccceeEEEECCEEEEEcCcCCC--
Confidence 69999999999999999999997432
Q ss_pred eEEeecceeccccCCccceEEeccCCc
Q 006473 478 QEITLDDLYSLNLSKLDEWKCIIPASE 504 (643)
Q Consensus 478 ~e~tl~D~~~ldl~k~d~w~~i~~~~~ 504 (643)
..++++|.||+.+ +.|+.+.+.+.
T Consensus 266 --~~~~~v~~yd~~~-~~W~~~~~~~~ 289 (301)
T 2vpj_A 266 --SLLSSIECYDPII-DSWEVVTSMGT 289 (301)
T ss_dssp --SBEEEEEEEETTT-TEEEEEEEEEE
T ss_pred --cccccEEEEcCCC-CeEEEcCCCCc
Confidence 2589999999999 99999865443
No 7
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=4.6e-42 Score=360.10 Aligned_cols=285 Identities=21% Similarity=0.373 Sum_probs=235.3
Q ss_pred CCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccC
Q 006473 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145 (643)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~ 145 (643)
..||.++.+ .+.||+|||. ++++||+.+++|... ++..|.||.+|+++++++.||||||...
T Consensus 6 ~~~r~~~~~------~~~i~~~GG~-----------~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~ 67 (318)
T 2woz_A 6 DIPRHGMFV------KDLILLVNDT-----------AAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYV 67 (318)
T ss_dssp SSCCCCCSE------EEEEEEECSS-----------EEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC
T ss_pred cccccccee------cchhhhcccc-----------ceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCccc
Confidence 356666544 3689999993 479999999999984 3445689999999999999999999642
Q ss_pred CCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
..........+++|+||+.+++|+.+++ +|.+|.+|++++++++||||||..... ...++++++||+.+++|+.+.
T Consensus 68 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~yd~~~~~W~~~~ 143 (318)
T 2woz_A 68 DEENKDQPLQSYFFQLDNVSSEWVGLPP--LPSARCLFGLGEVDDKIYVVAGKDLQT--EASLDSVLCYDPVAAKWSEVK 143 (318)
T ss_dssp -------CCCBEEEEEETTTTEEEECSC--BSSCBCSCEEEEETTEEEEEEEEBTTT--CCEEEEEEEEETTTTEEEEEC
T ss_pred CccccCCCccccEEEEeCCCCcEEECCC--CCccccccceEEECCEEEEEcCccCCC--CcccceEEEEeCCCCCEeECC
Confidence 2111001234569999999999999976 899999999999999999999986321 346899999999999999998
Q ss_pred cCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE
Q 006473 226 PRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (643)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~ 305 (643)
++ |.+|++|++++++++|||+||.... ...++++++||+.+++|+.+.. .|.+|.+|+++++
T Consensus 144 ~~-----p~~r~~~~~~~~~~~iyv~GG~~~~----------~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~ 205 (318)
T 2woz_A 144 NL-----PIKVYGHNVISHNGMIYCLGGKTDD----------KKCTNRVFIYNPKKGDWKDLAP---MKTPRSMFGVAIH 205 (318)
T ss_dssp CC-----SSCEESCEEEEETTEEEEECCEESS----------SCBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE
T ss_pred CC-----CCcccccEEEEECCEEEEEcCCCCC----------CCccceEEEEcCCCCEEEECCC---CCCCcccceEEEE
Confidence 77 8899999999999999999998543 3567899999999999999975 4789999999999
Q ss_pred CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhccc
Q 006473 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDA 385 (643)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (643)
+++||||||... ....+++++||+.+++|..+..
T Consensus 206 ~~~iyv~GG~~~---------~~~~~~~~~yd~~~~~W~~~~~------------------------------------- 239 (318)
T 2woz_A 206 KGKIVIAGGVTE---------DGLSASVEAFDLKTNKWEVMTE------------------------------------- 239 (318)
T ss_dssp TTEEEEEEEEET---------TEEEEEEEEEETTTCCEEECCC-------------------------------------
T ss_pred CCEEEEEcCcCC---------CCccceEEEEECCCCeEEECCC-------------------------------------
Confidence 999999999865 2357899999999999998764
Q ss_pred CcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCe
Q 006473 386 NEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDT 465 (643)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~ 465 (643)
+|.+|..|++++.++.
T Consensus 240 ----------------------------------------------------------------~p~~r~~~~~~~~~~~ 255 (318)
T 2woz_A 240 ----------------------------------------------------------------FPQERSSISLVSLAGS 255 (318)
T ss_dssp ----------------------------------------------------------------CSSCCBSCEEEEETTE
T ss_pred ----------------------------------------------------------------CCCcccceEEEEECCE
Confidence 6999999999999999
Q ss_pred EEEecceEeecC--e---EEeecceeccccCCccceEEecc
Q 006473 466 LYVYGGMMEIND--Q---EITLDDLYSLNLSKLDEWKCIIP 501 (643)
Q Consensus 466 Lyi~GG~~e~g~--~---e~tl~D~~~ldl~k~d~w~~i~~ 501 (643)
|||+||...... . ...++|+|.||+.+ +.|+.|.+
T Consensus 256 i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~-~~W~~~~~ 295 (318)
T 2woz_A 256 LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK-KEWAGMLK 295 (318)
T ss_dssp EEEECCBCCBC----CCBCCBCCCEEEEETTT-TEEEEEES
T ss_pred EEEECCeeccCCCCceeccceeeeEEEEeCCC-CEehhhcc
Confidence 999999854211 1 12489999999999 99999943
No 8
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=1.4e-41 Score=355.90 Aligned_cols=252 Identities=20% Similarity=0.373 Sum_probs=213.0
Q ss_pred CCCCCCCCceEEEEeccCCCEEEEEcceecC--CCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEE
Q 006473 63 VPAPSPRSNCSLNINPLKETELILYGGEFYN--GNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (643)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~--g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvf 140 (643)
.+.|.+|.+|+++++ +++||||||...+ +......+++++||+.+++|+.+++ .|.+|.+|++++++++||||
T Consensus 30 ~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~ 104 (315)
T 4asc_A 30 LSSQVPKNHVSLVTK---ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP--LPSPRCLFGLGEALNSIYVV 104 (315)
T ss_dssp CCCCSCSSEEEEECT---TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC--BSSCEESCEEEEETTEEEEE
T ss_pred CCCCCCccceEEEEE---CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC--CCcchhceeEEEECCEEEEE
Confidence 345789999999988 8999999997432 2233466789999999999999865 57899999999999999999
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
||...... ...++++|+||+.+++|+.+++ +|.+|++|++++++++||||||.... ...++++++||+.+++
T Consensus 105 GG~~~~~~---~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 105 GGREIKDG---ERCLDSVMCYDRLSFKWGESDP--LPYVVYGHTVLSHMDLVYVIGGKGSD---RKCLNKMCVYDPKKFE 176 (315)
T ss_dssp CCEESSTT---CCBCCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCTT---SCBCCCEEEEETTTTE
T ss_pred eCCcCCCC---CcccceEEEECCCCCcEeECCC--CCCcccceeEEEECCEEEEEeCCCCC---CcccceEEEEeCCCCe
Confidence 99753211 1357999999999999999987 89999999999999999999998533 3368999999999999
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceee
Q 006473 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (643)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~ 300 (643)
|+.++++ |.+|.+|++++++++|||+||+... ...+++++||+.+++|+.+.. +|.+|.+|
T Consensus 177 W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~ 237 (315)
T 4asc_A 177 WKELAPM-----QTARSLFGATVHDGRIIVAAGVTDT-----------GLTSSAEVYSITDNKWAPFEA---FPQERSSL 237 (315)
T ss_dssp EEECCCC-----SSCCBSCEEEEETTEEEEEEEECSS-----------SEEEEEEEEETTTTEEEEECC---CSSCCBSC
T ss_pred EEECCCC-----CCchhceEEEEECCEEEEEeccCCC-----------CccceEEEEECCCCeEEECCC---CCCcccce
Confidence 9999877 8899999999999999999998765 468899999999999999975 48899999
Q ss_pred EEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEe
Q 006473 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (643)
Q Consensus 301 s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (643)
++++++++||||||.+.............++++++||+.+++|..+
T Consensus 238 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 238 SLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred eEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 9999999999999986532111111224678999999999999877
No 9
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=3.8e-41 Score=353.13 Aligned_cols=250 Identities=16% Similarity=0.382 Sum_probs=209.6
Q ss_pred CCCCCCCceEEEEeccCCCEEEEEcceecCCC--CceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEe
Q 006473 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGN--KTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFG 141 (643)
Q Consensus 64 ~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~--~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfG 141 (643)
+.|.+|.+|+++++ ++.||||||...+.. .....+++++||+.+++|..+++ .|.+|++|++++++++|||||
T Consensus 42 ~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~G 116 (318)
T 2woz_A 42 AEQIPRNHSSIVTQ---QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP--LPSARCLFGLGEVDDKIYVVA 116 (318)
T ss_dssp CTTSCSSEEEEECS---SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC--BSSCBCSCEEEEETTEEEEEE
T ss_pred CccCCccceEEEEE---CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC--CCccccccceEEECCEEEEEc
Confidence 45689999999888 899999999643322 12344569999999999999965 578999999999999999999
Q ss_pred CccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 142 G~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
|...... ..++++|+||+.+++|+.+.+ +|.+|++|++++++++||||||..... ..++++++||+.+++|
T Consensus 117 G~~~~~~----~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 117 GKDLQTE----ASLDSVLCYDPVAAKWSEVKN--LPIKVYGHNVISHNGMIYCLGGKTDDK---KCTNRVFIYNPKKGDW 187 (318)
T ss_dssp EEBTTTC----CEEEEEEEEETTTTEEEEECC--CSSCEESCEEEEETTEEEEECCEESSS---CBCCCEEEEETTTTEE
T ss_pred CccCCCC----cccceEEEEeCCCCCEeECCC--CCCcccccEEEEECCEEEEEcCCCCCC---CccceEEEEcCCCCEE
Confidence 9864222 357899999999999999986 899999999999999999999986532 3689999999999999
Q ss_pred EEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeE
Q 006473 222 QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301 (643)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s 301 (643)
+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+.. .|.+|.+|+
T Consensus 188 ~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~ 248 (318)
T 2woz_A 188 KDLAPM-----KTPRSMFGVAIHKGKIVIAGGVTED-----------GLSASVEAFDLKTNKWEVMTE---FPQERSSIS 248 (318)
T ss_dssp EEECCC-----SSCCBSCEEEEETTEEEEEEEEETT-----------EEEEEEEEEETTTCCEEECCC---CSSCCBSCE
T ss_pred EECCCC-----CCCcccceEEEECCEEEEEcCcCCC-----------CccceEEEEECCCCeEEECCC---CCCcccceE
Confidence 999877 8899999999999999999998765 568899999999999999965 478999999
Q ss_pred EEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEe
Q 006473 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (643)
Q Consensus 302 ~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (643)
+++++++||||||..........+.....+++|+||+.+++|..+
T Consensus 249 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 249 LVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 999999999999987532222222235689999999999999887
No 10
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.7e-40 Score=343.70 Aligned_cols=239 Identities=19% Similarity=0.276 Sum_probs=210.6
Q ss_pred cCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEe
Q 006473 62 NVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFG 141 (643)
Q Consensus 62 ~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfG 141 (643)
...+|.+|.+|+++++ +++||||||.. +. ..++++++||+.+++|+.+++ .|.+|.+|++++++++|||||
T Consensus 45 ~~~~p~~r~~~~~~~~---~~~lyv~GG~~--~~--~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~G 115 (302)
T 2xn4_A 45 VAELPSRRCRAGMVYM---AGLVFAVGGFN--GS--LRVRTVDSYDPVKDQWTSVAN--MRDRRSTLGAAVLNGLLYAVG 115 (302)
T ss_dssp ECCCSSCCBSCEEEEE---TTEEEEESCBC--SS--SBCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEEE
T ss_pred cccCCcccccceEEEE---CCEEEEEeCcC--CC--ccccceEEECCCCCceeeCCC--CCccccceEEEEECCEEEEEc
Confidence 3578899999999998 89999999963 22 357899999999999999976 468999999999999999999
Q ss_pred CccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 142 G~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
|.... ..++++|+||+.+++|+.+++ +|.+|++|++++++++||+|||..... ..+++++++||+.+++|
T Consensus 116 G~~~~------~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 116 GFDGS------TGLSSVEAYNIKSNEWFHVAP--MNTRRSSVGVGVVGGLLYAVGGYDVAS--RQCLSTVECYNATTNEW 185 (302)
T ss_dssp EECSS------CEEEEEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEECCEETTT--TEECCCEEEEETTTTEE
T ss_pred CCCCC------ccCceEEEEeCCCCeEeecCC--CCCcccCceEEEECCEEEEEeCCCCCC--CccccEEEEEeCCCCcE
Confidence 97543 257899999999999999987 799999999999999999999997643 23689999999999999
Q ss_pred EEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeE
Q 006473 222 QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301 (643)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s 301 (643)
+.+.++ |.+|.+|++++++++|||+||.+.. ...+++++||+.+++|+.+.. +|.+|.+|+
T Consensus 186 ~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~ 246 (302)
T 2xn4_A 186 TYIAEM-----STRRSGAGVGVLNNLLYAVGGHDGP-----------LVRKSVEVYDPTTNAWRQVAD---MNMCRRNAG 246 (302)
T ss_dssp EEECCC-----SSCCBSCEEEEETTEEEEECCBSSS-----------SBCCCEEEEETTTTEEEEECC---CSSCCBSCE
T ss_pred EECCCC-----ccccccccEEEECCEEEEECCCCCC-----------cccceEEEEeCCCCCEeeCCC---CCCccccCe
Confidence 999877 8899999999999999999998754 457889999999999999975 477899999
Q ss_pred EEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 302 ~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
+++++++||||||.+. ...++++++||+.+++|..++
T Consensus 247 ~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 247 VCAVNGLLYVVGGDDG---------SCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp EEEETTEEEEECCBCS---------SSBCCCEEEEETTTTEEEECS
T ss_pred EEEECCEEEEECCcCC---------CcccccEEEEcCCCCeEEECC
Confidence 9999999999999864 235789999999999999876
No 11
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=2.6e-40 Score=344.39 Aligned_cols=243 Identities=19% Similarity=0.257 Sum_probs=215.3
Q ss_pred ccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEE
Q 006473 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (643)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvf 140 (643)
...++|.+|.+|+++++ ++.||||||.. ...++++++||+.+++|..+++ .|.+|.+|++++++++||||
T Consensus 38 ~~~~~p~~r~~~~~~~~---~~~lyv~GG~~-----~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~ 107 (306)
T 3ii7_A 38 DIRCPFEKRRDAACVFW---DNVVYILGGSQ-----LFPIKRMDCYNVVKDSWYSKLG--PPTPRDSLAACAAEGKIYTS 107 (306)
T ss_dssp ECCCCSCCCBSCEEEEE---TTEEEEECCBS-----SSBCCEEEEEETTTTEEEEEEC--CSSCCBSCEEEEETTEEEEE
T ss_pred cCCCCCcccceeEEEEE---CCEEEEEeCCC-----CCCcceEEEEeCCCCeEEECCC--CCccccceeEEEECCEEEEE
Confidence 44678999999999999 89999999963 3367999999999999999976 47899999999999999999
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
||..... ..++++|+||+.+++|+.++. +|.+|.+|++++++++||||||.........+++++++||+.+++
T Consensus 108 GG~~~~~-----~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 108 GGSEVGN-----SALYLFECYDTRTESWHTKPS--MLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180 (306)
T ss_dssp CCBBTTB-----SCCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred CCCCCCC-----cEeeeEEEEeCCCCceEeCCC--CcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence 9986322 257999999999999999977 899999999999999999999997655434568999999999999
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceee
Q 006473 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (643)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~ 300 (643)
|+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+.. .|.+|.+|
T Consensus 181 W~~~~~~-----p~~r~~~~~~~~~~~i~v~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~ 241 (306)
T 3ii7_A 181 WTELCPM-----IEARKNHGLVFVKDKIFAVGGQNGL-----------GGLDNVEYYDIKLNEWKMVSP---MPWKGVTV 241 (306)
T ss_dssp EEEECCC-----SSCCBSCEEEEETTEEEEECCEETT-----------EEBCCEEEEETTTTEEEECCC---CSCCBSCC
T ss_pred EEECCCc-----cchhhcceEEEECCEEEEEeCCCCC-----------CCCceEEEeeCCCCcEEECCC---CCCCccce
Confidence 9999877 8899999999999999999998765 567899999999999999965 47899999
Q ss_pred EEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 301 s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
++++++++||||||.+. ....+++++||+.+++|..++.
T Consensus 242 ~~~~~~~~i~v~GG~~~---------~~~~~~~~~yd~~~~~W~~~~~ 280 (306)
T 3ii7_A 242 KCAAVGSIVYVLAGFQG---------VGRLGHILEYNTETDKWVANSK 280 (306)
T ss_dssp EEEEETTEEEEEECBCS---------SSBCCEEEEEETTTTEEEEEEE
T ss_pred eEEEECCEEEEEeCcCC---------CeeeeeEEEEcCCCCeEEeCCC
Confidence 99999999999999864 2357899999999999999876
No 12
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=4.5e-40 Score=343.56 Aligned_cols=243 Identities=19% Similarity=0.289 Sum_probs=213.9
Q ss_pred ccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEE
Q 006473 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (643)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvf 140 (643)
....+|.+|.+|+++++ +++||||||..........++++++||+.+++|+.+++ .|.+|.+|++++++++|||+
T Consensus 53 ~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~ 127 (308)
T 1zgk_A 53 RLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP--MSVPRNRIGVGVIDGHIYAV 127 (308)
T ss_dssp ECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC--CSSCCBTCEEEEETTEEEEE
T ss_pred ECCCCCcccccceEEEE---CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCC--CCcCccccEEEEECCEEEEE
Confidence 44678999999999998 89999999974322334578999999999999999976 46899999999999999999
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
||.... ..++++++||+.+++|+.+++ +|.+|.+|++++++++||||||..... .++++++||+.+++
T Consensus 128 GG~~~~------~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 128 GGSHGC------IHHNSVERYEPERDEWHLVAP--MLTRRIGVGVAVLNRLLYAVGGFDGTN----RLNSAECYYPERNE 195 (308)
T ss_dssp CCEETT------EECCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCSSC----BCCCEEEEETTTTE
T ss_pred cCCCCC------cccccEEEECCCCCeEeECCC--CCccccceEEEEECCEEEEEeCCCCCC----cCceEEEEeCCCCe
Confidence 998653 357899999999999999987 899999999999999999999986543 38999999999999
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceee
Q 006473 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (643)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~ 300 (643)
|+.+.++ |.+|.+|++++++++|||+||+... ...+++++||+.+++|+.+.. +|.+|.+|
T Consensus 196 W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~ 256 (308)
T 1zgk_A 196 WRMITAM-----NTIRSGAGVCVLHNCIYAAGGYDGQ-----------DQLNSVERYDVETETWTFVAP---MKHRRSAL 256 (308)
T ss_dssp EEECCCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTTEEEECCC---CSSCCBSC
T ss_pred EeeCCCC-----CCccccceEEEECCEEEEEeCCCCC-----------CccceEEEEeCCCCcEEECCC---CCCCccce
Confidence 9999876 8899999999999999999998754 457899999999999999975 47899999
Q ss_pred EEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 301 s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
++++++++||||||.+. ...++++++||+.+++|..++.
T Consensus 257 ~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~ 295 (308)
T 1zgk_A 257 GITVHQGRIYVLGGYDG---------HTFLDSVECYDPDTDTWSEVTR 295 (308)
T ss_dssp EEEEETTEEEEECCBCS---------SCBCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCEEEEEcCcCC---------CcccceEEEEcCCCCEEeecCC
Confidence 99999999999999764 3457899999999999999865
No 13
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=8e-39 Score=332.15 Aligned_cols=239 Identities=19% Similarity=0.281 Sum_probs=210.6
Q ss_pred ccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCc---EEEecCCCCCCCceeeEEEEECCEE
Q 006473 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE---WKVISSPNSPPPRSAHQAVSWKNYL 137 (643)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~---W~~l~s~~~P~pRs~ha~~~~~~~i 137 (643)
....+|.+|.+|+++++ +++||||||.. + ...++++++||+.+++ |+.+++ .|.+|.+|++++++++|
T Consensus 45 ~~~~~p~~r~~~~~~~~---~~~l~v~GG~~--~--~~~~~~~~~~d~~~~~~~~W~~~~~--~p~~r~~~~~~~~~~~l 115 (301)
T 2vpj_A 45 FLPSITRKRRYVASVSL---HDRIYVIGGYD--G--RSRLSSVECLDYTADEDGVWYSVAP--MNVRRGLAGATTLGDMI 115 (301)
T ss_dssp ECCCCSSCCBSCEEEEE---TTEEEEECCBC--S--SCBCCCEEEEETTCCTTCCCEEECC--CSSCCBSCEEEEETTEE
T ss_pred eCCCCChhhccccEEEE---CCEEEEEcCCC--C--CccCceEEEEECCCCCCCeeEECCC--CCCCccceeEEEECCEE
Confidence 34568889999999998 89999999963 2 2367899999999999 999965 57899999999999999
Q ss_pred EEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcC
Q 006473 138 YIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (643)
Q Consensus 138 yvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~ 217 (643)
||+||.... ..++++|+||+.+++|+.+++ +|.+|.+|++++++++||+|||.... ..++++++||+.
T Consensus 116 yv~GG~~~~------~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~d~~ 183 (301)
T 2vpj_A 116 YVSGGFDGS------RRHTSMERYDPNIDQWSMLGD--MQTAREGAGLVVASGVIYCLGGYDGL----NILNSVEKYDPH 183 (301)
T ss_dssp EEECCBCSS------CBCCEEEEEETTTTEEEEEEE--CSSCCBSCEEEEETTEEEEECCBCSS----CBCCCEEEEETT
T ss_pred EEEcccCCC------cccceEEEEcCCCCeEEECCC--CCCCcccceEEEECCEEEEECCCCCC----cccceEEEEeCC
Confidence 999998643 247899999999999999987 79999999999999999999998653 268999999999
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCc
Q 006473 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (643)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R 297 (643)
+++|+.+.++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+.. +|.+|
T Consensus 184 ~~~W~~~~~~-----p~~r~~~~~~~~~~~i~v~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~---~p~~r 244 (301)
T 2vpj_A 184 TGHWTNVTPM-----ATKRSGAGVALLNDHIYVVGGFDGT-----------AHLSSVEAYNIRTDSWTTVTS---MTTPR 244 (301)
T ss_dssp TTEEEEECCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTTEEEEECC---CSSCC
T ss_pred CCcEEeCCCC-----CcccccceEEEECCEEEEEeCCCCC-----------cccceEEEEeCCCCcEEECCC---CCCcc
Confidence 9999999876 8899999999999999999998765 347899999999999999965 47899
Q ss_pred eeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 298 AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 298 ~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
.+|++++++++||||||... ...++++++||+.+++|..++.
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~ 286 (301)
T 2vpj_A 245 CYVGATVLRGRLYAIAGYDG---------NSLLSSIECYDPIIDSWEVVTS 286 (301)
T ss_dssp BSCEEEEETTEEEEECCBCS---------SSBEEEEEEEETTTTEEEEEEE
T ss_pred cceeEEEECCEEEEEcCcCC---------CcccccEEEEcCCCCeEEEcCC
Confidence 99999999999999999764 2356899999999999999876
No 14
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=1.8e-37 Score=359.32 Aligned_cols=244 Identities=13% Similarity=0.223 Sum_probs=203.0
Q ss_pred CCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEec-C---CCCCCCceeeEEEEE--CCE
Q 006473 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-S---PNSPPPRSAHQAVSW--KNY 136 (643)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~-s---~~~P~pRs~ha~~~~--~~~ 136 (643)
..+|.+|.+++++ + ++.||||||.. + ..++++|+||+.+++|..++ + ...|.+|++|+++++ +++
T Consensus 383 ~~~p~rr~g~~~~-~---~~~iyv~GG~~--~---~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~ 453 (695)
T 2zwa_A 383 ECPINRKFGDVDV-A---GNDVFYMGGSN--P---YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ 453 (695)
T ss_dssp CCTTCCBSCEEEE-C---SSCEEEECCBS--S---SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE
T ss_pred CCCCCCceeEEEE-E---CCEEEEECCCC--C---CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE
Confidence 4456677776554 5 78999999952 2 36799999999999999998 4 246899999999999 999
Q ss_pred EEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEE
Q 006473 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFD 215 (643)
Q Consensus 137 iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD 215 (643)
||||||...... .++++|+||+.+++|+.+.+ +|.+|++|+++++ +++||||||..... ++++||
T Consensus 454 lyv~GG~~~~~~-----~~~dv~~yd~~t~~W~~~~~--~p~~R~~h~~~~~~~~~iyv~GG~~~~~-------~v~~yd 519 (695)
T 2zwa_A 454 LLLIGGRKAPHQ-----GLSDNWIFDMKTREWSMIKS--LSHTRFRHSACSLPDGNVLILGGVTEGP-------AMLLYN 519 (695)
T ss_dssp EEEECCBSSTTC-----BCCCCEEEETTTTEEEECCC--CSBCCBSCEEEECTTSCEEEECCBCSSC-------SEEEEE
T ss_pred EEEEcCCCCCCC-----ccccEEEEeCCCCcEEECCC--CCCCcccceEEEEcCCEEEEECCCCCCC-------CEEEEE
Confidence 999999865432 47999999999999999976 8999999999997 99999999986532 899999
Q ss_pred cCCCceEEeccCCCCCCCCCccceeEEEeC---CEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe------eEE
Q 006473 216 LDQFKWQEIKPRFGSMWPSPRSGFQFFVYQ---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE------WSK 286 (643)
Q Consensus 216 ~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~---~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~------W~~ 286 (643)
+.+++|+.+.+. +..|.+|++|++++++ ++|||+||+... ....++++|+||+.+++ |+.
T Consensus 520 ~~t~~W~~~~~~--g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~---------~~~~~~~v~~yd~~~~~w~~~~~W~~ 588 (695)
T 2zwa_A 520 VTEEIFKDVTPK--DEFFQNSLVSAGLEFDPVSKQGIILGGGFMD---------QTTVSDKAIIFKYDAENATEPITVIK 588 (695)
T ss_dssp TTTTEEEECCCS--SGGGGSCCBSCEEEEETTTTEEEEECCBCTT---------SSCBCCEEEEEEECTTCSSCCEEEEE
T ss_pred CCCCceEEccCC--CCCCCcccceeEEEEeCCCCEEEEECCcCCC---------CCeeeCcEEEEEccCCccccceEEEE
Confidence 999999999874 3348999999988875 899999998654 12567899999999999 898
Q ss_pred eccCCCCCCCceeeEEEEEC-CeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 287 VKKIGMPPGPRAGFSMCVHK-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 287 l~~~g~~P~~R~g~s~~~~~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+..+ +|.+|.+|++++++ ++||||||...... ....+++++||+.+++|..+..
T Consensus 589 ~~~~--p~~~R~~~~~~~~~~~~iyv~GG~~~~~~------~~~~~~v~~yd~~t~~W~~~~~ 643 (695)
T 2zwa_A 589 KLQH--PLFQRYGSQIKYITPRKLLIVGGTSPSGL------FDRTNSIISLDPLSETLTSIPI 643 (695)
T ss_dssp EEEC--GGGCCBSCEEEEEETTEEEEECCBCSSCC------CCTTTSEEEEETTTTEEEECCC
T ss_pred cCCC--CCCCcccceEEEeCCCEEEEECCccCCCC------CCCCCeEEEEECCCCeEEEeec
Confidence 8763 45789999999999 99999999864211 1357899999999999995443
No 15
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=3e-35 Score=312.93 Aligned_cols=266 Identities=18% Similarity=0.211 Sum_probs=204.5
Q ss_pred ccCCCC-CCCCceEEEEeccCCCEEEEEcceec-CCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEE
Q 006473 61 DNVPAP-SPRSNCSLNINPLKETELILYGGEFY-NGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (643)
Q Consensus 61 ~~~~~P-~~R~~~s~~~~~~~~~~lyvfGG~~~-~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iy 138 (643)
...++| .+|.+|+++++ +++||||||... .......++++++||+.+++|+.++++. |.+|.+|++++++++||
T Consensus 47 ~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iy 122 (357)
T 2uvk_A 47 ALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAY 122 (357)
T ss_dssp ECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEE
T ss_pred ECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEE
Confidence 455677 89999999999 899999999732 2223457899999999999999998876 79999999999999999
Q ss_pred EEeCccCCC----------------------------CCCcceecCeEEEEECCCCcEEEeccCCCCCCC-ceeEEEEEC
Q 006473 139 IFGGEFTSP----------------------------NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR-SGHRMVLYK 189 (643)
Q Consensus 139 vfGG~~~~~----------------------------~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R-s~h~~~~~~ 189 (643)
||||..... ....+..++++++||+.+++|+.+.+ +|.+| .+|++++++
T Consensus 123 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~p~~~~~~~~~~~~~ 200 (357)
T 2uvk_A 123 VTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE--SPWYGTAGAAVVNKG 200 (357)
T ss_dssp EEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEE--CSSCCCBSCEEEEET
T ss_pred EEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCC--CCCCCcccccEEEEC
Confidence 999974321 00001246899999999999999976 67665 459999999
Q ss_pred CEEEEEeeeecCCCceeeeccEEEEEc--CCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCc---cCC
Q 006473 190 HKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTD---KNQ 264 (643)
Q Consensus 190 ~~lyvfGG~~~~~~~~~~~~dv~~yD~--~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~---~~~ 264 (643)
++||||||..... ..++++++||+ .+++|+.+..++ .|.+|.+|++++++++|||+||+....... .+.
T Consensus 201 ~~iyv~GG~~~~~---~~~~~v~~~d~d~~~~~W~~~~~~~---~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~ 274 (357)
T 2uvk_A 201 DKTWLINGEAKPG---LRTDAVFELDFTGNNLKWNKLAPVS---SPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGK 274 (357)
T ss_dssp TEEEEECCEEETT---EECCCEEEEECC---CEEEECCCSS---TTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTC
T ss_pred CEEEEEeeecCCC---cccCceEEEEecCCCCcEEecCCCC---CCcccccceEEEECCEEEEEcCccccCCcccccccc
Confidence 9999999987543 35789999987 899999998873 256678899999999999999975320000 000
Q ss_pred ---CCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 265 ---SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 265 ---~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
......+.++++||+.+++|+.+.. +|.+|.+|++++++++||||||.+.. ...+++|++|+++++
T Consensus 275 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~--------~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 275 NYAHEGLKKSYSTDIHLWHNGKWDKSGE---LSQGRAYGVSLPWNNSLLIIGGETAG--------GKAVTDSVLITVKDN 343 (357)
T ss_dssp SSTTTTCCCEECCEEEECC---CEEEEE---CSSCCBSSEEEEETTEEEEEEEECGG--------GCEEEEEEEEEC-CC
T ss_pred eeccccccceeeEEEEecCCCceeeCCC---CCCCcccceeEEeCCEEEEEeeeCCC--------CCEeeeEEEEEEcCc
Confidence 0112345789999999999999975 47899999999999999999998652 234799999999999
Q ss_pred cEEEeEec
Q 006473 342 RWYPLELR 349 (643)
Q Consensus 342 ~W~~l~~~ 349 (643)
+|..+.+.
T Consensus 344 ~~~~~~~~ 351 (357)
T 2uvk_A 344 KVTVQNLE 351 (357)
T ss_dssp SCEEEC--
T ss_pred EeEeeecc
Confidence 99998764
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=1.5e-32 Score=318.15 Aligned_cols=242 Identities=14% Similarity=0.155 Sum_probs=202.3
Q ss_pred CCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEec-c---CCCCCCCceeEEEEE--CCEE
Q 006473 119 PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN-L---KGCPSPRSGHRMVLY--KHKI 192 (643)
Q Consensus 119 ~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~-~---~g~P~~Rs~h~~~~~--~~~l 192 (643)
+..|.+|++|+++ +++.||||||... . .++++|+||+.+++|+.+. + ..+|.+|.+|+++++ +++|
T Consensus 383 ~~~p~rr~g~~~~-~~~~iyv~GG~~~--~-----~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~l 454 (695)
T 2zwa_A 383 ECPINRKFGDVDV-AGNDVFYMGGSNP--Y-----RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQL 454 (695)
T ss_dssp CCTTCCBSCEEEE-CSSCEEEECCBSS--S-----BCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEE
T ss_pred CCCCCCceeEEEE-ECCEEEEECCCCC--C-----CcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEE
Confidence 4456677776554 8999999999765 1 4689999999999999998 4 236999999999999 9999
Q ss_pred EEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCcee
Q 006473 193 IVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIH 271 (643)
Q Consensus 193 yvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~ 271 (643)
|||||..... ..++++|+||+.+++|+.+.++ |.+|++|+++++ +++|||+||+... .
T Consensus 455 yv~GG~~~~~---~~~~dv~~yd~~t~~W~~~~~~-----p~~R~~h~~~~~~~~~iyv~GG~~~~-----------~-- 513 (695)
T 2zwa_A 455 LLIGGRKAPH---QGLSDNWIFDMKTREWSMIKSL-----SHTRFRHSACSLPDGNVLILGGVTEG-----------P-- 513 (695)
T ss_dssp EEECCBSSTT---CBCCCCEEEETTTTEEEECCCC-----SBCCBSCEEEECTTSCEEEECCBCSS-----------C--
T ss_pred EEEcCCCCCC---CccccEEEEeCCCCcEEECCCC-----CCCcccceEEEEcCCEEEEECCCCCC-----------C--
Confidence 9999986543 2689999999999999999877 899999999996 9999999999765 1
Q ss_pred eeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEEC---CeEEEeccccccccCccccccccCCcEEEEECCCCc------
Q 006473 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHK---KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR------ 342 (643)
Q Consensus 272 ~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~---~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~------ 342 (643)
++|+||+.+++|+.+...+..|.+|.+|++++++ ++||||||..... ..+++++++||+.+++
T Consensus 514 -~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~-------~~~~~~v~~yd~~~~~w~~~~~ 585 (695)
T 2zwa_A 514 -AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQ-------TTVSDKAIIFKYDAENATEPIT 585 (695)
T ss_dssp -SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTS-------SCBCCEEEEEEECTTCSSCCEE
T ss_pred -CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCC-------CeeeCcEEEEEccCCccccceE
Confidence 8999999999999999877778999999988876 8999999985421 2467999999999999
Q ss_pred EEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCce
Q 006473 343 WYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGV 422 (643)
Q Consensus 343 W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (643)
|..+...
T Consensus 586 W~~~~~~------------------------------------------------------------------------- 592 (695)
T 2zwa_A 586 VIKKLQH------------------------------------------------------------------------- 592 (695)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred EEEcCCC-------------------------------------------------------------------------
Confidence 5555440
Q ss_pred eeeecCCCCCCccccccccccCCCCCcCCccccccceeeec-CeEEEecceEeecCeEEeecceeccccCCccceEEe
Q 006473 423 LAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGK-DTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCI 499 (643)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~-~~Lyi~GG~~e~g~~e~tl~D~~~ldl~k~d~w~~i 499 (643)
.|.+|++|++++.+ +.|||+||....+.. ..++++|.||+.+ +.|+.+
T Consensus 593 ---------------------------p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~-~~~~~v~~yd~~t-~~W~~~ 641 (695)
T 2zwa_A 593 ---------------------------PLFQRYGSQIKYITPRKLLIVGGTSPSGLF-DRTNSIISLDPLS-ETLTSI 641 (695)
T ss_dssp ---------------------------GGGCCBSCEEEEEETTEEEEECCBCSSCCC-CTTTSEEEEETTT-TEEEEC
T ss_pred ---------------------------CCCCcccceEEEeCCCEEEEECCccCCCCC-CCCCeEEEEECCC-CeEEEe
Confidence 26889999999999 999999998533211 2489999999999 999954
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.97 E-value=3.7e-30 Score=296.49 Aligned_cols=256 Identities=11% Similarity=0.042 Sum_probs=183.0
Q ss_pred CCCCCceEEEEeccCCCEEEEEcceecCC--CCceeeccEEEEECCCCcEEEecCCCCCCCceee--EEEE-ECCEEEEE
Q 006473 66 PSPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAH--QAVS-WKNYLYIF 140 (643)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyvfGG~~~~g--~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~h--a~~~-~~~~iyvf 140 (643)
|.||.++++++++. +++||||||...+. ......+.+++||+.+++|+.++.++ .+|..| ++++ .+++|||+
T Consensus 183 ~~P~~~~~~av~~~-~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~--~~~~~~~~~~~~~~~g~lyv~ 259 (656)
T 1k3i_A 183 DLPIVPAAAAIEPT-SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV--TKHDMFCPGISMDGNGQIVVT 259 (656)
T ss_dssp ECSSCCSEEEEETT-TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE--CSCCCSSCEEEECTTSCEEEE
T ss_pred cCCCCceeEEEEec-CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC--CCCCCccccccCCCCCCEEEe
Confidence 34556777777753 58999999964321 11123457999999999999887653 455544 3444 48999999
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
||... .++++||+.+++|+.+.. +|.+|.+|+++++ +++||||||..... ..++++++||+.++
T Consensus 260 GG~~~----------~~v~~yd~~t~~W~~~~~--~~~~R~~~s~~~~~dg~iyv~GG~~~~~---~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 260 GGNDA----------KKTSLYDSSSDSWIPGPD--MQVARGYQSSATMSDGRVFTIGGSWSGG---VFEKNGEVYSPSSK 324 (656)
T ss_dssp CSSST----------TCEEEEEGGGTEEEECCC--CSSCCSSCEEEECTTSCEEEECCCCCSS---SCCCCEEEEETTTT
T ss_pred CCCCC----------CceEEecCcCCceeECCC--CCccccccceEEecCCeEEEEeCcccCC---cccccceEeCCCCC
Confidence 99743 379999999999999976 8999999999999 99999999954322 25889999999999
Q ss_pred ceEEec-----cCCCCCC----------------------------------------------------CCCccceeEE
Q 006473 220 KWQEIK-----PRFGSMW----------------------------------------------------PSPRSGFQFF 242 (643)
Q Consensus 220 ~W~~v~-----~~~~~~~----------------------------------------------------P~~R~~~s~~ 242 (643)
+|+.++ +++.... +.++..++++
T Consensus 325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred cceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 999973 2221100 0112233444
Q ss_pred E---eCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEecccccc
Q 006473 243 V---YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDM 318 (643)
Q Consensus 243 ~---~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~ 318 (643)
. ++++|||+||..... . .........+++||+.+++|..+. .+..|.+|.+|+++++ +++|||+||....
T Consensus 405 ~~~~~~~~i~v~GG~~~~~--~---~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQ--D---SDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp EEETTTTEEEEECCBSSSS--S---SBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred eccCCCCeEEEEeCCCCCC--C---CCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccC
Confidence 3 489999999975320 0 000112237899999999999986 2345889999999988 9999999997542
Q ss_pred ccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 319 EMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 319 ~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
.... .....+++++||+.+++|..+..
T Consensus 479 ~~~~---~~~~~~~v~~ydp~t~~W~~~~~ 505 (656)
T 1k3i_A 479 IPFE---DSTPVFTPEIYVPEQDTFYKQNP 505 (656)
T ss_dssp CTTC---CCSBCCCCEEEEGGGTEEEECCC
T ss_pred cCcC---CCCcccceEEEcCCCCceeecCC
Confidence 1000 13457899999999999988654
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.95 E-value=1.8e-27 Score=274.03 Aligned_cols=268 Identities=13% Similarity=0.040 Sum_probs=197.1
Q ss_pred EEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 103 LYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 103 v~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
+..||+.+++|..+++ .||..|+++++ +++|||+||............++++++||+.+++|+.+.. +|.+|
T Consensus 168 ~~~~dp~~~~W~~~~~----~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~--~~~~~ 241 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTID----LPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV--TVTKH 241 (656)
T ss_dssp CCCCCTTSCEEEEEEE----CSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE--EECSC
T ss_pred cccCCCCCCeeeeecc----CCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc--cCCCC
Confidence 5568888999998854 45566666766 8999999997543211011234689999999999999876 66777
Q ss_pred ceeE--EEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCC
Q 006473 181 SGHR--MVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (643)
Q Consensus 181 s~h~--~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~ 256 (643)
..|+ +++ .+++||++||+.. .++++||+.+++|+.+..+ |.+|.+|+++++ +++|||+||...
T Consensus 242 ~~~~~~~~~~~~g~lyv~GG~~~--------~~v~~yd~~t~~W~~~~~~-----~~~R~~~s~~~~~dg~iyv~GG~~~ 308 (656)
T 1k3i_A 242 DMFCPGISMDGNGQIVVTGGNDA--------KKTSLYDSSSDSWIPGPDM-----QVARGYQSSATMSDGRVFTIGGSWS 308 (656)
T ss_dssp CCSSCEEEECTTSCEEEECSSST--------TCEEEEEGGGTEEEECCCC-----SSCCSSCEEEECTTSCEEEECCCCC
T ss_pred CCccccccCCCCCCEEEeCCCCC--------CceEEecCcCCceeECCCC-----CccccccceEEecCCeEEEEeCccc
Confidence 6654 443 5899999999753 3799999999999999877 889999999999 999999999533
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCC------------------------------------------
Q 006473 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP------------------------------------------ 294 (643)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P------------------------------------------ 294 (643)
. ...++++++||+.+++|+.+...+..|
T Consensus 309 ~----------~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~ 378 (656)
T 1k3i_A 309 G----------GVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG 378 (656)
T ss_dssp S----------SSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred C----------CcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCC
Confidence 2 246778999999999999973211100
Q ss_pred -----------------CCceeeEEEE---ECCeEEEeccccccccCccccccccCC---cEEEEECCCCcEEEeEecCC
Q 006473 295 -----------------GPRAGFSMCV---HKKRALLFGGVVDMEMKGDVIMSLFLN---ELYGFQLDNHRWYPLELRKE 351 (643)
Q Consensus 295 -----------------~~R~g~s~~~---~~~~iyvfGG~~~~~~~~~~~~~~~~n---dl~~yd~~t~~W~~l~~~~~ 351 (643)
.++..+++++ ++++||||||...... ...++ .+++||+.+++|..+...
T Consensus 379 ~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~------~~~~~~~~~v~~yd~~~~~W~~~~~~-- 450 (656)
T 1k3i_A 379 SGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD------SDATTNAHIITLGEPGTSPNTVFASN-- 450 (656)
T ss_dssp TCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS------SBCCCCEEEEECCSTTSCCEEEECTT--
T ss_pred cceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC------CCcCCcceEEEcCCCCCCCeeEEccC--
Confidence 0122334443 4899999999753111 12234 789999999999877620
Q ss_pred CcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCC
Q 006473 352 KSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKP 431 (643)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (643)
T Consensus 451 -------------------------------------------------------------------------------- 450 (656)
T 1k3i_A 451 -------------------------------------------------------------------------------- 450 (656)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccCCCCCcCCccccccceeee-cCeEEEecceEeec--CeEEeecceeccccCCccceEEeccCCch
Q 006473 432 YESKKKSDMQKSLLPEIVKPCGRINSCMVVG-KDTLYVYGGMMEIN--DQEITLDDLYSLNLSKLDEWKCIIPASES 505 (643)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~-~~~Lyi~GG~~e~g--~~e~tl~D~~~ldl~k~d~w~~i~~~~~~ 505 (643)
.||.+|..|+++++ +++|||+||..... +....+++++.||+.+ +.|+.+.+....
T Consensus 451 -----------------~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t-~~W~~~~~~~~~ 509 (656)
T 1k3i_A 451 -----------------GLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ-DTFYKQNPNSIV 509 (656)
T ss_dssp -----------------CCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG-TEEEECCCCSSC
T ss_pred -----------------CCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC-CceeecCCCCCc
Confidence 07999999999888 99999999974210 1123488999999988 999998876554
No 19
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.71 E-value=0.0027 Score=62.93 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=108.3
Q ss_pred ceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCc
Q 006473 125 RSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204 (643)
Q Consensus 125 Rs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~ 204 (643)
-+-+.+...++.||+-.|.... +.+.++|+.+++=..-.. +|..-.+.+++..+++||+....
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~---------S~v~~vD~~tgkv~~~~~--l~~~~fgeGi~~~~~~ly~ltw~------ 83 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGR---------SSVRKVDLETGRILQRAE--VPPPYFGAGIVAWRDRLIQLTWR------ 83 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTS---------CEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS------
T ss_pred cccccEEEECCEEEEECCCCCC---------ceEEEEECCCCCEEEEEe--CCCCcceeEEEEeCCEEEEEEee------
Confidence 3445666778999999997432 578899999997655433 46666788899999999998543
Q ss_pred eeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCee
Q 006473 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (643)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (643)
.+.+++||+.+.+- +... |.+..|.+++..++.||+.-| + +.++++|+.+.+-
T Consensus 84 ---~~~v~v~D~~tl~~--~~ti-----~~~~~Gwglt~dg~~L~vSdg-s----------------~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 84 ---NHEGFVYDLATLTP--RARF-----RYPGEGWALTSDDSHLYMSDG-T----------------AVIRKLDPDTLQQ 136 (243)
T ss_dssp ---SSEEEEEETTTTEE--EEEE-----ECSSCCCEEEECSSCEEEECS-S----------------SEEEEECTTTCCE
T ss_pred ---CCEEEEEECCcCcE--EEEE-----eCCCCceEEeeCCCEEEEECC-C----------------CeEEEEeCCCCeE
Confidence 57899999988653 3333 223356677766888998866 3 2489999998765
Q ss_pred EEeccCCCCCCC-ceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 285 SKVKKIGMPPGP-RAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 285 ~~l~~~g~~P~~-R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
...-..+..+.+ +.---+...+++||+--- ..++|.+.|+.+.+
T Consensus 137 ~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw--------------~s~~I~vIDp~tG~ 181 (243)
T 3mbr_X 137 VGSIKVTAGGRPLDNLNELEWVNGELLANVW--------------LTSRIARIDPASGK 181 (243)
T ss_dssp EEEEECEETTEECCCEEEEEEETTEEEEEET--------------TTTEEEEECTTTCB
T ss_pred EEEEEEccCCcccccceeeEEeCCEEEEEEC--------------CCCeEEEEECCCCC
Confidence 443222222222 122345566888874432 24789999999875
No 20
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.69 E-value=0.022 Score=58.57 Aligned_cols=193 Identities=13% Similarity=0.069 Sum_probs=112.9
Q ss_pred eccEEEEECCCCcEEEecC---CCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEE-EeccCC
Q 006473 100 YGDLYRYDVEKQEWKVISS---PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE-QLNLKG 175 (643)
Q Consensus 100 ~ndv~~yd~~~~~W~~l~s---~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~-~~~~~g 175 (643)
.+.|..||+.++++..... ...+.....+.++..++++||.... .+.+.++|+.+.+-. .++.
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----------~~~v~viD~~t~~~~~~i~~-- 82 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----------SHVIFAIDINTFKEVGRITG-- 82 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----------GTEEEEEETTTCCEEEEEEC--
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----------CCEEEEEECcccEEEEEcCC--
Confidence 3578999999998764210 0123444556677789999998752 257999999988763 3422
Q ss_pred CCCCCceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEE-eccCCCCCCCCCccceeEEEeCCEEEEEcC
Q 006473 176 CPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRFGSMWPSPRSGFQFFVYQDEVFLYGG 253 (643)
Q Consensus 176 ~P~~Rs~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG 253 (643)
...-+.+++ .+++||+.... .+.|+++|+.+.+-.. +... ..... ...-+.++..++.||+..-
T Consensus 83 ---~~~p~~i~~~~~g~lyv~~~~---------~~~v~~iD~~t~~~~~~i~~g-~~~~~-~~~p~~i~~~~~~lyv~~~ 148 (328)
T 3dsm_A 83 ---FTSPRYIHFLSDEKAYVTQIW---------DYRIFIINPKTYEITGYIECP-DMDME-SGSTEQMVQYGKYVYVNCW 148 (328)
T ss_dssp ---CSSEEEEEEEETTEEEEEEBS---------CSEEEEEETTTTEEEEEEECT-TCCTT-TCBCCCEEEETTEEEEEEC
T ss_pred ---CCCCcEEEEeCCCeEEEEECC---------CCeEEEEECCCCeEEEEEEcC-Ccccc-CCCcceEEEECCEEEEEcC
Confidence 122334455 67899987642 3679999999887543 2221 00000 0012234447889998852
Q ss_pred -CCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCC
Q 006473 254 -YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLN 331 (643)
Q Consensus 254 -~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~n 331 (643)
.. +.+.++|+.+.+....-..+..| +.+++. ++++|+.......... ...-.+
T Consensus 149 ~~~----------------~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~----~~~~~~ 203 (328)
T 3dsm_A 149 SYQ----------------NRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSP----YGYEAP 203 (328)
T ss_dssp TTC----------------CEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCS----SCBCCC
T ss_pred CCC----------------CEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCc----cccCCc
Confidence 22 34889999988766544333222 233333 5787776532210000 000136
Q ss_pred cEEEEECCCCcEE
Q 006473 332 ELYGFQLDNHRWY 344 (643)
Q Consensus 332 dl~~yd~~t~~W~ 344 (643)
.|+++|+.+.+..
T Consensus 204 ~v~~id~~t~~v~ 216 (328)
T 3dsm_A 204 SLYRIDAETFTVE 216 (328)
T ss_dssp EEEEEETTTTEEE
T ss_pred eEEEEECCCCeEE
Confidence 7999999887643
No 21
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.67 E-value=0.041 Score=57.23 Aligned_cols=185 Identities=15% Similarity=0.163 Sum_probs=103.4
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.||+... .+.|++||+.+++ |+.-.... ...+.+..++.||+..+ -..+
T Consensus 103 ~~~v~v~~~----------~g~l~a~d~~tG~~~W~~~~~~~-----~~~~p~~~~~~v~v~~~------------~g~l 155 (376)
T 3q7m_A 103 GGHVYIGSE----------KAQVYALNTSDGTVAWQTKVAGE-----ALSRPVVSDGLVLIHTS------------NGQL 155 (376)
T ss_dssp TTEEEEEET----------TSEEEEEETTTCCEEEEEECSSC-----CCSCCEEETTEEEEECT------------TSEE
T ss_pred CCEEEEEcC----------CCEEEEEECCCCCEEEEEeCCCc-----eEcCCEEECCEEEEEcC------------CCeE
Confidence 677777543 1479999998764 77543211 12223445788877543 1468
Q ss_pred EEEECCCCc--EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccCCCCCCCC
Q 006473 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPS 234 (643)
Q Consensus 159 ~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~ 234 (643)
+.||+.+++ |+.-........+.....++.++.||+ |.. ...++.||+.+.+ |+.....+.+....
T Consensus 156 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~-g~~---------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 225 (376)
T 3q7m_A 156 QALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVV-GGD---------NGRVSAVLMEQGQMIWQQRISQATGSTEI 225 (376)
T ss_dssp EEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEE-CCT---------TTEEEEEETTTCCEEEEEECCC-------
T ss_pred EEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEE-EcC---------CCEEEEEECCCCcEEEEEecccCCCCccc
Confidence 999998875 876543211112222344555777776 321 2358899987654 76654331111000
Q ss_pred Cc---cceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeccCCCCCCCceeeEEEEECCeE
Q 006473 235 PR---SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRA 309 (643)
Q Consensus 235 ~R---~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~R~g~s~~~~~~~i 309 (643)
.+ .....++.++.||+.+ ..+. +++||+.+. .|..... ...+.++.+++|
T Consensus 226 ~~~~~~~~~p~~~~~~v~~~~-~~g~----------------l~~~d~~tG~~~w~~~~~--------~~~~~~~~~~~l 280 (376)
T 3q7m_A 226 DRLSDVDTTPVVVNGVVFALA-YNGN----------------LTALDLRSGQIMWKRELG--------SVNDFIVDGNRI 280 (376)
T ss_dssp ----CCCCCCEEETTEEEEEC-TTSC----------------EEEEETTTCCEEEEECCC--------CEEEEEEETTEE
T ss_pred ccccccCCCcEEECCEEEEEe-cCcE----------------EEEEECCCCcEEeeccCC--------CCCCceEECCEE
Confidence 11 1223345578887754 3322 789998655 5765311 123466678888
Q ss_pred EEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
|+.... +.|++||+.+.+
T Consensus 281 ~~~~~~---------------g~l~~~d~~tG~ 298 (376)
T 3q7m_A 281 YLVDQN---------------DRVMALTIDGGV 298 (376)
T ss_dssp EEEETT---------------CCEEEEETTTCC
T ss_pred EEEcCC---------------CeEEEEECCCCc
Confidence 887531 349999998864
No 22
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.64 E-value=0.02 Score=59.57 Aligned_cols=193 Identities=11% Similarity=0.097 Sum_probs=106.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCCCC-----CCceeeEEEEECCEEEEEeCccCCCCCCcce
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP-----PPRSAHQAVSWKNYLYIFGGEFTSPNQERFH 153 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P-----~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~ 153 (643)
++.||+.... +.|++||+.++ .|+.-.....+ ........+..++.||+....
T Consensus 53 ~~~v~~~~~~----------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~---------- 112 (376)
T 3q7m_A 53 DNVVYAADRA----------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK---------- 112 (376)
T ss_dssp TTEEEEECTT----------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT----------
T ss_pred CCEEEEEcCC----------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC----------
Confidence 7888887641 37899999866 47754322111 122334445568899886531
Q ss_pred ecCeEEEEECCCCc--EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccCCC
Q 006473 154 HYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFG 229 (643)
Q Consensus 154 ~~~dv~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~ 229 (643)
..++.||..+++ |+.-... . .....++.++.||+..+ ...|+.||+.+.+ |+.-...+.
T Consensus 113 --g~l~a~d~~tG~~~W~~~~~~----~-~~~~p~~~~~~v~v~~~----------~g~l~~~d~~tG~~~W~~~~~~~~ 175 (376)
T 3q7m_A 113 --AQVYALNTSDGTVAWQTKVAG----E-ALSRPVVSDGLVLIHTS----------NGQLQALNEADGAVKWTVNLDMPS 175 (376)
T ss_dssp --SEEEEEETTTCCEEEEEECSS----C-CCSCCEEETTEEEEECT----------TSEEEEEETTTCCEEEEEECCC--
T ss_pred --CEEEEEECCCCCEEEEEeCCC----c-eEcCCEEECCEEEEEcC----------CCeEEEEECCCCcEEEEEeCCCCc
Confidence 468999998774 7654321 1 12223456788777432 2469999988765 876543311
Q ss_pred CCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeccCC--CCCCCc---eeeEE
Q 006473 230 SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIG--MPPGPR---AGFSM 302 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g--~~P~~R---~g~s~ 302 (643)
...+...+.++.++.||+ |...+ .++.||+.+. .|+.-.... .....| ...+.
T Consensus 176 ---~~~~~~~~~~~~~~~v~~-g~~~g----------------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p 235 (376)
T 3q7m_A 176 ---LSLRGESAPTTAFGAAVV-GGDNG----------------RVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTP 235 (376)
T ss_dssp ------CCCCCCEEETTEEEE-CCTTT----------------EEEEEETTTCCEEEEEECCC-----------CCCCCC
T ss_pred ---eeecCCCCcEEECCEEEE-EcCCC----------------EEEEEECCCCcEEEEEecccCCCCcccccccccCCCc
Confidence 111222334455777665 43332 3788997654 677643210 000001 12334
Q ss_pred EEECCeEEEeccccccccCccccccccCCcEEEEECCCC--cEEE
Q 006473 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (643)
Q Consensus 303 ~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~ 345 (643)
++.++.+|+.+. ...|++||+.+. .|..
T Consensus 236 ~~~~~~v~~~~~---------------~g~l~~~d~~tG~~~w~~ 265 (376)
T 3q7m_A 236 VVVNGVVFALAY---------------NGNLTALDLRSGQIMWKR 265 (376)
T ss_dssp EEETTEEEEECT---------------TSCEEEEETTTCCEEEEE
T ss_pred EEECCEEEEEec---------------CcEEEEEECCCCcEEeec
Confidence 556777777542 134899998876 4653
No 23
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.49 E-value=0.028 Score=55.59 Aligned_cols=190 Identities=17% Similarity=0.162 Sum_probs=118.0
Q ss_pred CceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCC
Q 006473 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~ 149 (643)
+-..+.+. ++.||+-.|.+ |. +.|.++|+.+++-..-.. .|..-++.+++..+++||+....
T Consensus 22 ftqGL~~~---~~~LyestG~~--g~-----S~v~~vD~~tgkv~~~~~--l~~~~fgeGi~~~~~~ly~ltw~------ 83 (243)
T 3mbr_X 22 FTEGLFYL---RGHLYESTGET--GR-----SSVRKVDLETGRILQRAE--VPPPYFGAGIVAWRDRLIQLTWR------ 83 (243)
T ss_dssp CEEEEEEE---TTEEEEEECCT--TS-----CEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS------
T ss_pred ccccEEEE---CCEEEEECCCC--CC-----ceEEEEECCCCCEEEEEe--CCCCcceeEEEEeCCEEEEEEee------
Confidence 34467777 68999998852 22 478999999987654332 24455778888889999998653
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceE-EeccCC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRF 228 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~~ 228 (643)
-+.+++||+.+.+-..- .|.+..+.+++.-+++||+.=| .+.++.+|+.+.+-. .+....
T Consensus 84 -----~~~v~v~D~~tl~~~~t----i~~~~~Gwglt~dg~~L~vSdg----------s~~l~~iDp~t~~~~~~I~V~~ 144 (243)
T 3mbr_X 84 -----NHEGFVYDLATLTPRAR----FRYPGEGWALTSDDSHLYMSDG----------TAVIRKLDPDTLQQVGSIKVTA 144 (243)
T ss_dssp -----SSEEEEEETTTTEEEEE----EECSSCCCEEEECSSCEEEECS----------SSEEEEECTTTCCEEEEEECEE
T ss_pred -----CCEEEEEECCcCcEEEE----EeCCCCceEEeeCCCEEEEECC----------CCeEEEEeCCCCeEEEEEEEcc
Confidence 36799999988764332 1223356777777888888644 367999999987643 232221
Q ss_pred CCCCCCCccc-eeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCC-CCC--------CCce
Q 006473 229 GSMWPSPRSG-FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG-MPP--------GPRA 298 (643)
Q Consensus 229 ~~~~P~~R~~-~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g-~~P--------~~R~ 298 (643)
. +.+... -.+...++.||+--.. .+.+.+.|+.+.+-...-.++ ..| ..-.
T Consensus 145 ~---g~~~~~lNeLe~~~G~lyanvw~----------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~v 205 (243)
T 3mbr_X 145 G---GRPLDNLNELEWVNGELLANVWL----------------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDV 205 (243)
T ss_dssp T---TEECCCEEEEEEETTEEEEEETT----------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSC
T ss_pred C---CcccccceeeEEeCCEEEEEECC----------------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCc
Confidence 0 222111 1233448888854322 246889999887544332211 111 1112
Q ss_pred eeEEEEE--CCeEEEeccc
Q 006473 299 GFSMCVH--KKRALLFGGV 315 (643)
Q Consensus 299 g~s~~~~--~~~iyvfGG~ 315 (643)
-.++|+. .+++||.|-.
T Consensus 206 lNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 206 LNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred eEEEEEcCCCCEEEEECCC
Confidence 3456665 5889988854
No 24
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.48 E-value=0.039 Score=56.69 Aligned_cols=206 Identities=13% Similarity=0.095 Sum_probs=118.9
Q ss_pred CCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcE-EEecCCCCCCCceeeEEEE-ECCEEEEEeCccCC
Q 006473 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW-KVISSPNSPPPRSAHQAVS-WKNYLYIFGGEFTS 146 (643)
Q Consensus 69 R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W-~~l~s~~~P~pRs~ha~~~-~~~~iyvfGG~~~~ 146 (643)
...+.+++. +++||+.... .+.+.++|+.+.+- ..++.. ..| +.++. -+++||+....
T Consensus 44 ~~~~~i~~~---~~~lyv~~~~---------~~~v~viD~~t~~~~~~i~~~--~~p---~~i~~~~~g~lyv~~~~--- 103 (328)
T 3dsm_A 44 DVAQSMVIR---DGIGWIVVNN---------SHVIFAIDINTFKEVGRITGF--TSP---RYIHFLSDEKAYVTQIW--- 103 (328)
T ss_dssp SCEEEEEEE---TTEEEEEEGG---------GTEEEEEETTTCCEEEEEECC--SSE---EEEEEEETTEEEEEEBS---
T ss_pred ccceEEEEE---CCEEEEEEcC---------CCEEEEEECcccEEEEEcCCC--CCC---cEEEEeCCCeEEEEECC---
Confidence 344566665 7889988761 35789999998876 345322 122 33334 57899998742
Q ss_pred CCCCcceecCeEEEEECCCCcEEE-eccCCCC-CCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEe
Q 006473 147 PNQERFHHYKDFWMLDLKTNQWEQ-LNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~-~~~~g~P-~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (643)
-+.++++|+.+.+-.. ++..... ....-+.+++.+++||+..- + ..+.|.++|+.+++....
T Consensus 104 --------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~--~------~~~~v~viD~~t~~~~~~ 167 (328)
T 3dsm_A 104 --------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW--S------YQNRILKIDTETDKVVDE 167 (328)
T ss_dssp --------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC--T------TCCEEEEEETTTTEEEEE
T ss_pred --------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC--C------CCCEEEEEECCCCeEEEE
Confidence 2578999999987543 3321100 00123445557899998742 0 135799999998876443
Q ss_pred ccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEE
Q 006473 225 KPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (643)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~ 303 (643)
-.. + ..| +.++.. ++++|+....... . ..-......++++|+.+.+....-.. |....-..++
T Consensus 168 i~~--g--~~p---~~i~~~~dG~l~v~~~~~~~--~----~~~~~~~~~v~~id~~t~~v~~~~~~---~~g~~p~~la 231 (328)
T 3dsm_A 168 LTI--G--IQP---TSLVMDKYNKMWTITDGGYE--G----SPYGYEAPSLYRIDAETFTVEKQFKF---KLGDWPSEVQ 231 (328)
T ss_dssp EEC--S--SCB---CCCEECTTSEEEEEBCCBCT--T----CSSCBCCCEEEEEETTTTEEEEEEEC---CTTCCCEEEE
T ss_pred EEc--C--CCc---cceEEcCCCCEEEEECCCcc--C----CccccCCceEEEEECCCCeEEEEEec---CCCCCceeEE
Confidence 222 1 122 223333 6788877543211 0 00000135799999998876643222 2222234555
Q ss_pred EE--CCeEEEeccccccccCccccccccCCcEEEEECCCCcE
Q 006473 304 VH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 304 ~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (643)
+. ++.+|+..+ .|++||+.+.+.
T Consensus 232 ~~~d~~~lyv~~~-----------------~v~~~d~~t~~~ 256 (328)
T 3dsm_A 232 LNGTRDTLYWINN-----------------DIWRMPVEADRV 256 (328)
T ss_dssp ECTTSCEEEEESS-----------------SEEEEETTCSSC
T ss_pred EecCCCEEEEEcc-----------------EEEEEECCCCce
Confidence 55 567777543 489999988764
No 25
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.41 E-value=0.028 Score=56.23 Aligned_cols=188 Identities=11% Similarity=0.067 Sum_probs=114.5
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCc
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~ 151 (643)
..+.+. ++.||+-.|.+ + .+.|.++|+.+++-..-.. +|..-++..++..+++||+....
T Consensus 46 qGL~~~---~~~LyestG~~--g-----~S~v~~vD~~Tgkv~~~~~--l~~~~FgeGit~~g~~ly~ltw~-------- 105 (262)
T 3nol_A 46 EGFFYR---NGYFYESTGLN--G-----RSSIRKVDIESGKTLQQIE--LGKRYFGEGISDWKDKIVGLTWK-------- 105 (262)
T ss_dssp EEEEEE---TTEEEEEEEET--T-----EEEEEEECTTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS--------
T ss_pred ceEEEE---CCEEEEECCCC--C-----CceEEEEECCCCcEEEEEe--cCCccceeEEEEeCCEEEEEEee--------
Confidence 555555 68999999952 2 2478899999987654332 23444667788889999999653
Q ss_pred ceecCeEEEEECCCCcEEE-eccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceE-EeccCCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQ-LNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRFG 229 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~-~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~~~ 229 (643)
-+.+++||+.+.+-.. ++. +-.+.+++.-++.||+.-| .+.++.+|+.+.+-. .+.....
T Consensus 106 ---~~~v~v~D~~t~~~~~ti~~-----~~eG~glt~dg~~L~~SdG----------s~~i~~iDp~T~~v~~~I~V~~~ 167 (262)
T 3nol_A 106 ---NGLGFVWNIRNLRQVRSFNY-----DGEGWGLTHNDQYLIMSDG----------TPVLRFLDPESLTPVRTITVTAH 167 (262)
T ss_dssp ---SSEEEEEETTTCCEEEEEEC-----SSCCCCEEECSSCEEECCS----------SSEEEEECTTTCSEEEEEECEET
T ss_pred ---CCEEEEEECccCcEEEEEEC-----CCCceEEecCCCEEEEECC----------CCeEEEEcCCCCeEEEEEEeccC
Confidence 3679999998876433 322 2356667766778888644 367999999987643 3332210
Q ss_pred CCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCC-CC-------CCCceeeE
Q 006473 230 SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG-MP-------PGPRAGFS 301 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g-~~-------P~~R~g~s 301 (643)
+ .|..... .+...++.||+---. .+.+.+.|+.+.+-...-..+ .. |..-.-.+
T Consensus 168 g-~~~~~lN-ELe~~~G~lyan~w~----------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNG 229 (262)
T 3nol_A 168 G-EELPELN-ELEWVDGEIFANVWQ----------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNG 229 (262)
T ss_dssp T-EECCCEE-EEEEETTEEEEEETT----------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEE
T ss_pred C-ccccccc-eeEEECCEEEEEEcc----------------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEE
Confidence 0 0111111 133448888863322 356899999887654432221 11 11112355
Q ss_pred EEEE--CCeEEEeccc
Q 006473 302 MCVH--KKRALLFGGV 315 (643)
Q Consensus 302 ~~~~--~~~iyvfGG~ 315 (643)
+|+. .+++||.|-.
T Consensus 230 IA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 230 IAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEETTTTEEEEEETT
T ss_pred EEEcCCCCEEEEECCC
Confidence 6665 5788888854
No 26
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.35 E-value=0.054 Score=54.41 Aligned_cols=202 Identities=12% Similarity=0.054 Sum_probs=119.0
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~ 150 (643)
-+.+.+.+ ++.||+..|.+ + .+.|.++|+.+++-..... .+....+..++..++.||+..-.
T Consensus 23 ~~Gl~~~~--dg~Lyvstg~~--~-----~s~v~~iD~~tg~v~~~i~--l~~~~fgeGi~~~g~~lyv~t~~------- 84 (266)
T 2iwa_A 23 TQGLVYAE--NDTLFESTGLY--G-----RSSVRQVALQTGKVENIHK--MDDSYFGEGLTLLNEKLYQVVWL------- 84 (266)
T ss_dssp EEEEEECS--TTEEEEEECST--T-----TCEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEETT-------
T ss_pred cccEEEeC--CCeEEEECCCC--C-----CCEEEEEECCCCCEEEEEe--cCCCcceEEEEEeCCEEEEEEec-------
Confidence 46777775 47999987731 1 2579999999987554322 12334566777789999999642
Q ss_pred cceecCeEEEEECCCCcEE-EeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCce-EEeccCC
Q 006473 151 RFHHYKDFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRF 228 (643)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~-~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~ 228 (643)
-+.+++||+.+.+=. .++. + .-.+.+++.-++++|+.-| .+.++.+|+.+++- ..+....
T Consensus 85 ----~~~v~viD~~t~~v~~~i~~---g-~~~g~glt~Dg~~l~vs~g----------s~~l~viD~~t~~v~~~I~Vg~ 146 (266)
T 2iwa_A 85 ----KNIGFIYDRRTLSNIKNFTH---Q-MKDGWGLATDGKILYGSDG----------TSILYEIDPHTFKLIKKHNVKY 146 (266)
T ss_dssp ----CSEEEEEETTTTEEEEEEEC---C-SSSCCEEEECSSSEEEECS----------SSEEEEECTTTCCEEEEEECEE
T ss_pred ----CCEEEEEECCCCcEEEEEEC---C-CCCeEEEEECCCEEEEECC----------CCeEEEEECCCCcEEEEEEECC
Confidence 367999999876532 2322 1 1234445555778887643 46899999998763 2333210
Q ss_pred CCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccC-CC--------CCCCcee
Q 006473 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI-GM--------PPGPRAG 299 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~-g~--------~P~~R~g 299 (643)
. ..|..+.. .+...++.||+--.. .+.+.+.|+.+.+-...-.. +. .|..-.-
T Consensus 147 ~-~~p~~~~n-ele~~dg~lyvn~~~----------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~ 208 (266)
T 2iwa_A 147 N-GHRVIRLN-ELEYINGEVWANIWQ----------------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVL 208 (266)
T ss_dssp T-TEECCCEE-EEEEETTEEEEEETT----------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCE
T ss_pred C-Ccccccce-eEEEECCEEEEecCC----------------CCeEEEEECCCCcEEEEEECCCcccccccccccccCce
Confidence 0 00111111 233337788765332 24699999988754332221 10 0111122
Q ss_pred eEEEEE--CCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 300 FSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 300 ~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
.++++. ++++||.|+. .+.|+..++..
T Consensus 209 nGIa~~~~~~~lfVTgk~--------------~~~v~~i~l~~ 237 (266)
T 2iwa_A 209 NGIAWDQENKRIFVTGKL--------------WPKLFEIKLHL 237 (266)
T ss_dssp EEEEEETTTTEEEEEETT--------------CSEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEECCC--------------CCeEEEEEEec
Confidence 456665 5689999875 35677777654
No 27
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.21 E-value=0.0092 Score=59.73 Aligned_cols=157 Identities=11% Similarity=0.047 Sum_probs=101.1
Q ss_pred eEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceee
Q 006473 128 HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRY 207 (643)
Q Consensus 128 ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~ 207 (643)
..+...++.||+..|... -+.+.++|+.+++=..-.. ++..-.+.+++..+++||+....
T Consensus 46 qGL~~~~~~LyestG~~g---------~S~v~~vD~~Tgkv~~~~~--l~~~~FgeGit~~g~~ly~ltw~--------- 105 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNG---------RSSIRKVDIESGKTLQQIE--LGKRYFGEGISDWKDKIVGLTWK--------- 105 (262)
T ss_dssp EEEEEETTEEEEEEEETT---------EEEEEEECTTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS---------
T ss_pred ceEEEECCEEEEECCCCC---------CceEEEEECCCCcEEEEEe--cCCccceeEEEEeCCEEEEEEee---------
Confidence 444455889999998643 2568899999987654433 45555677888999999998553
Q ss_pred eccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 006473 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (643)
.+.+++||+.+.+-. ... +.+-.|.+++..++.||+.-| + +.++++|+.+.+-...
T Consensus 106 ~~~v~v~D~~t~~~~--~ti-----~~~~eG~glt~dg~~L~~SdG-s----------------~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 106 NGLGFVWNIRNLRQV--RSF-----NYDGEGWGLTHNDQYLIMSDG-T----------------PVLRFLDPESLTPVRT 161 (262)
T ss_dssp SSEEEEEETTTCCEE--EEE-----ECSSCCCCEEECSSCEEECCS-S----------------SEEEEECTTTCSEEEE
T ss_pred CCEEEEEECccCcEE--EEE-----ECCCCceEEecCCCEEEEECC-C----------------CeEEEEcCCCCeEEEE
Confidence 478999999887632 222 222255666666778888765 2 3489999998765443
Q ss_pred ccCCCCCCCcee-eEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 288 KKIGMPPGPRAG-FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 288 ~~~g~~P~~R~g-~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
-..+.-+.+... --+.+.+++||+--- ..+.|.+.|+.+.+
T Consensus 162 I~V~~~g~~~~~lNELe~~~G~lyan~w--------------~~~~I~vIDp~tG~ 203 (262)
T 3nol_A 162 ITVTAHGEELPELNELEWVDGEIFANVW--------------QTNKIVRIDPETGK 203 (262)
T ss_dssp EECEETTEECCCEEEEEEETTEEEEEET--------------TSSEEEEECTTTCB
T ss_pred EEeccCCccccccceeEEECCEEEEEEc--------------cCCeEEEEECCCCc
Confidence 221110111111 124556888875321 24789999999875
No 28
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.21 E-value=0.024 Score=56.77 Aligned_cols=184 Identities=15% Similarity=0.096 Sum_probs=111.9
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCc
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~ 151 (643)
..+.+. ++.||+-.|. ++.|.++|+.+++-..-. .|..-++..++..+++||+....
T Consensus 58 qGL~~~---~~~Ly~stG~---------~g~v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~-------- 114 (268)
T 3nok_A 58 QGLVFH---QGHFFESTGH---------QGTLRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWT-------- 114 (268)
T ss_dssp EEEEEE---TTEEEEEETT---------TTEEEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESS--------
T ss_pred ceEEEE---CCEEEEEcCC---------CCEEEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEcc--------
Confidence 566665 7899999883 234889999988644322 23444667788889999998653
Q ss_pred ceecCeEEEEECCCCcEEE-eccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEE-eccCCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQ-LNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRFG 229 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~-~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~~ 229 (643)
-+.+++||+.+.+-.. ++. +-.+.+++.-++.||+.-| .+.++.+|+.+.+-.. +....
T Consensus 115 ---~~~v~V~D~~Tl~~~~ti~~-----~~eGwGLt~Dg~~L~vSdG----------s~~l~~iDp~T~~v~~~I~V~~- 175 (268)
T 3nok_A 115 ---EGLLFTWSGMPPQRERTTRY-----SGEGWGLCYWNGKLVRSDG----------GTMLTFHEPDGFALVGAVQVKL- 175 (268)
T ss_dssp ---SCEEEEEETTTTEEEEEEEC-----SSCCCCEEEETTEEEEECS----------SSEEEEECTTTCCEEEEEECEE-
T ss_pred ---CCEEEEEECCcCcEEEEEeC-----CCceeEEecCCCEEEEECC----------CCEEEEEcCCCCeEEEEEEeCC-
Confidence 3679999998876543 322 2346677777889998754 4679999999876432 32221
Q ss_pred CCCCCCccc-eeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCC---------CCCCCcee
Q 006473 230 SMWPSPRSG-FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG---------MPPGPRAG 299 (643)
Q Consensus 230 ~~~P~~R~~-~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g---------~~P~~R~g 299 (643)
.+.+... -.+...++.||+--- ..+.+.+.|+.+.+-...-..+ ..+..-.-
T Consensus 176 --~g~~v~~lNeLe~~dG~lyanvw----------------~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vl 237 (268)
T 3nok_A 176 --RGQPVELINELECANGVIYANIW----------------HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVL 237 (268)
T ss_dssp --TTEECCCEEEEEEETTEEEEEET----------------TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCE
T ss_pred --CCcccccccccEEeCCEEEEEEC----------------CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCce
Confidence 0111111 112334788775321 1356899999887543332211 01111122
Q ss_pred eEEEEE--CCeEEEeccc
Q 006473 300 FSMCVH--KKRALLFGGV 315 (643)
Q Consensus 300 ~s~~~~--~~~iyvfGG~ 315 (643)
.++|+. .++|||.|-.
T Consensus 238 NGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 238 NGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEEEECTTTCCEEEEETT
T ss_pred EEEEEcCCCCEEEEeCCC
Confidence 455555 5788888753
No 29
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.12 E-value=0.014 Score=60.74 Aligned_cols=185 Identities=12% Similarity=0.030 Sum_probs=103.8
Q ss_pred CEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 82 ~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
..||+.|+. -+.|++||+.+++........ ..-++++.. +..||+.|+. -..+.
T Consensus 2 ~~l~vs~~~---------d~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~-----------d~~i~ 57 (391)
T 1l0q_A 2 TFAYIANSE---------SDNISVIDVTSNKVTATIPVG----SNPMGAVISPDGTKVYVANAH-----------SNDVS 57 (391)
T ss_dssp EEEEEEETT---------TTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEEGG-----------GTEEE
T ss_pred CEEEEEcCC---------CCEEEEEECCCCeEEEEeecC----CCcceEEECCCCCEEEEECCC-----------CCeEE
Confidence 457777762 247899999988655432221 112333332 4467777754 24688
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcc
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (643)
+||+.+++....-. .+. .-++++.. +++||+.|.. ...+++||+.+.+....... .. .
T Consensus 58 v~d~~~~~~~~~~~--~~~--~v~~~~~spdg~~l~~~~~~---------~~~v~v~d~~~~~~~~~~~~-----~~--~ 117 (391)
T 1l0q_A 58 IIDTATNNVIATVP--AGS--SPQGVAVSPDGKQVYVTNMA---------SSTLSVIDTTSNTVAGTVKT-----GK--S 117 (391)
T ss_dssp EEETTTTEEEEEEE--CSS--SEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEEC-----SS--S
T ss_pred EEECCCCeEEEEEE--CCC--CccceEECCCCCEEEEEECC---------CCEEEEEECCCCeEEEEEeC-----CC--C
Confidence 99998887654433 122 22233333 4456665432 25699999988765443322 11 1
Q ss_pred ceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--CCeEEEec
Q 006473 238 GFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFG 313 (643)
Q Consensus 238 ~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~--~~~iyvfG 313 (643)
-.+++.. +..||+.++..+. +++||+.+.+....-..+. .-..+++. +..||+.+
T Consensus 118 ~~~~~~s~dg~~l~~~~~~~~~----------------v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~dg~~l~~~~ 176 (391)
T 1l0q_A 118 PLGLALSPDGKKLYVTNNGDKT----------------VSVINTVTKAVINTVSVGR-----SPKGIAVTPDGTKVYVAN 176 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTE----------------EEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCE----------------EEEEECCCCcEEEEEecCC-----CcceEEECCCCCEEEEEe
Confidence 2333333 4467777765443 8899998877665543221 11344444 34566665
Q ss_pred cccccccCccccccccCCcEEEEECCCCcEEE
Q 006473 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (643)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (643)
+.. +.|++||+.+++...
T Consensus 177 ~~~--------------~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 177 FDS--------------MSISVIDTVTNSVID 194 (391)
T ss_dssp TTT--------------TEEEEEETTTTEEEE
T ss_pred CCC--------------CEEEEEECCCCeEEE
Confidence 432 459999998875443
No 30
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=97.02 E-value=0.048 Score=53.21 Aligned_cols=215 Identities=10% Similarity=0.032 Sum_probs=110.4
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCC-CcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK-QEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~-~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~ 149 (643)
.++...| +++++++++. ..+++||+.+ .+...+.... ....-.+++.. ++..+++++....
T Consensus 45 ~~~~~sp--dg~~l~~~~~----------~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~--- 107 (297)
T 2ojh_A 45 EAPNWSP--DGKYLLLNSE----------GLLYRLSLAGDPSPEKVDTGF--ATICNNDHGISPDGALYAISDKVEF--- 107 (297)
T ss_dssp EEEEECT--TSSEEEEEET----------TEEEEEESSSCCSCEECCCTT--CCCBCSCCEECTTSSEEEEEECTTT---
T ss_pred EeeEECC--CCCEEEEEcC----------CeEEEEeCCCCCCceEecccc--ccccccceEECCCCCEEEEEEeCCC---
Confidence 3455555 5666666651 3789999998 8777665322 11111222222 4555555543211
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
....+|.++..+.....+... .. .+.++.. ++ .|++.++... ...+|.+++.+.....+...
T Consensus 108 ----~~~~l~~~~~~~~~~~~~~~~---~~--~~~~~~spdg~~l~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 108 ----GKSAIYLLPSTGGTPRLMTKN---LP--SYWHGWSPDGKSFTYCGIRDQ-------VFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp ----SSCEEEEEETTCCCCEECCSS---SS--EEEEEECTTSSEEEEEEEETT-------EEEEEEEETTTCCEEECCCS
T ss_pred ----CcceEEEEECCCCceEEeecC---CC--ccceEECCCCCEEEEEECCCC-------ceEEEEEECCCCcceEcccC
Confidence 136799999988776555431 11 2222222 34 4554444321 24688888877766555433
Q ss_pred CCCCCCCCccceeEEEe-CC-EEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE
Q 006473 228 FGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~ 305 (643)
+... .++... ++ .|++.+...+. ..+|.+++.......+... ......+++.
T Consensus 172 -----~~~~--~~~~~s~dg~~l~~~~~~~~~--------------~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~s 225 (297)
T 2ojh_A 172 -----EGRN--DGPDYSPDGRWIYFNSSRTGQ--------------MQIWRVRVDGSSVERITDS-----AYGDWFPHPS 225 (297)
T ss_dssp -----SSCE--EEEEECTTSSEEEEEECTTSS--------------CEEEEEETTSSCEEECCCC-----SEEEEEEEEC
T ss_pred -----CCcc--ccceECCCCCEEEEEecCCCC--------------ccEEEECCCCCCcEEEecC-----CcccCCeEEC
Confidence 1111 222222 44 45544433322 4588888777766655431 1122223332
Q ss_pred -CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+++.+++++....... ........|++||+.+.....+..
T Consensus 226 ~dg~~l~~~~~~~~~~~---~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 226 PSGDKVVFVSYDADVFD---HPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp TTSSEEEEEEEETTCCS---CCSSEEEEEEEEETTSCSCEEEEE
T ss_pred CCCCEEEEEEcCCCCCc---ccccCceEEEEEecCCCCceeeec
Confidence 5666666654321100 000012569999999887766553
No 31
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.94 E-value=0.17 Score=49.87 Aligned_cols=201 Identities=6% Similarity=-0.039 Sum_probs=108.6
Q ss_pred CceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCC
Q 006473 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~ 148 (643)
..+++++.+ ++.||+.... .+.+++||+. .+...+..+. ....-++++.. ++.||+....
T Consensus 21 ~p~~i~~d~--~g~l~v~~~~---------~~~v~~~~~~-~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~----- 81 (300)
T 2qc5_A 21 GPYGITSSE--DGKVWFTQHK---------ANKISSLDQS-GRIKEFEVPT--PDAKVMCLIVSSLGDIWFTENG----- 81 (300)
T ss_dssp CEEEEEECT--TSCEEEEETT---------TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECTTSCEEEEETT-----
T ss_pred CcceeeECC--CCCEEEEcCC---------CCeEEEECCC-CceEEEECCC--CCCcceeEEECCCCCEEEEecC-----
Confidence 345555554 6788886531 2468899988 7777654321 11223344443 5778887532
Q ss_pred CCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
...+++||+. +.+..+.... ....-+.+++. ++.||+.... ...+++||+. .+...+...
T Consensus 82 ------~~~v~~~d~~-g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~~-g~~~~~~~~ 142 (300)
T 2qc5_A 82 ------ANKIGKLSKK-GGFTEYPLPQ--PDSGPYGITEGLNGDIWFTQLN---------GDRIGKLTAD-GTIYEYDLP 142 (300)
T ss_dssp ------TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECSTTCEEEEETT---------TTEEEEECTT-SCEEEEECS
T ss_pred ------CCeEEEECCC-CCeEEecCCC--CCCCCccceECCCCCEEEEccC---------CCeEEEECCC-CCEEEccCC
Confidence 2468899988 7776554311 12223344443 5778875421 2468889887 665544322
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-
Q 006473 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~- 305 (643)
. ....-++++.. ++.||+...... .+++|++ +.++..+.... ....-.++++.
T Consensus 143 ~-----~~~~~~~i~~d~~g~l~v~~~~~~----------------~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~d~ 197 (300)
T 2qc5_A 143 N-----KGSYPAFITLGSDNALWFTENQNN----------------SIGRITN-TGKLEEYPLPT---NAAAPVGITSGN 197 (300)
T ss_dssp S-----TTCCEEEEEECTTSSEEEEETTTT----------------EEEEECT-TCCEEEEECSS---TTCCEEEEEECT
T ss_pred C-----CCCCceeEEECCCCCEEEEecCCC----------------eEEEECC-CCcEEEeeCCC---CCCCcceEEECC
Confidence 0 11122333333 566777653222 3788988 56666543211 11222344444
Q ss_pred CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
++.||+.... .+.|++||+ +..+..+..
T Consensus 198 ~g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~~ 225 (300)
T 2qc5_A 198 DGALWFVEIM--------------GNKIGRITT-TGEISEYDI 225 (300)
T ss_dssp TSSEEEEETT--------------TTEEEEECT-TCCEEEEEC
T ss_pred CCCEEEEccC--------------CCEEEEEcC-CCcEEEEEC
Confidence 5677775422 235889988 566665543
No 32
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.94 E-value=0.069 Score=53.61 Aligned_cols=158 Identities=13% Similarity=0.106 Sum_probs=99.1
Q ss_pred eEEEEEC-CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCcee
Q 006473 128 HQAVSWK-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVR 206 (643)
Q Consensus 128 ha~~~~~-~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~ 206 (643)
|.++..+ +.||+..|... -+.+.++|+.+++=..--+ ++....+++++..+++||+..-.
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---------~s~v~~iD~~tg~v~~~i~--l~~~~fgeGi~~~g~~lyv~t~~-------- 84 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---------RSSVRQVALQTGKVENIHK--MDDSYFGEGLTLLNEKLYQVVWL-------- 84 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---------TCEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEETT--------
T ss_pred ccEEEeCCCeEEEECCCCC---------CCEEEEEECCCCCEEEEEe--cCCCcceEEEEEeCCEEEEEEec--------
Confidence 5666555 89999887422 2579999999988554333 34444667788889999998542
Q ss_pred eeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 207 YYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 207 ~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
.+.+++||+.+.+ .+...+.+ . -.+.+++.-++.+|+.-| + +.++++|+.+.+-..
T Consensus 85 -~~~v~viD~~t~~--v~~~i~~g-~---~~g~glt~Dg~~l~vs~g-s----------------~~l~viD~~t~~v~~ 140 (266)
T 2iwa_A 85 -KNIGFIYDRRTLS--NIKNFTHQ-M---KDGWGLATDGKILYGSDG-T----------------SILYEIDPHTFKLIK 140 (266)
T ss_dssp -CSEEEEEETTTTE--EEEEEECC-S---SSCCEEEECSSSEEEECS-S----------------SEEEEECTTTCCEEE
T ss_pred -CCEEEEEECCCCc--EEEEEECC-C---CCeEEEEECCCEEEEECC-C----------------CeEEEEECCCCcEEE
Confidence 4689999998764 33333211 1 234445555778888764 2 348999998876444
Q ss_pred eccCCCCCCCc-eeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 287 VKKIGMPPGPR-AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 287 l~~~g~~P~~R-~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.-..+..+.+. .-..+.+.++++|+--. ..+.|.+.|+.+++
T Consensus 141 ~I~Vg~~~~p~~~~nele~~dg~lyvn~~--------------~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 141 KHNVKYNGHRVIRLNELEYINGEVWANIW--------------QTDCIARISAKDGT 183 (266)
T ss_dssp EEECEETTEECCCEEEEEEETTEEEEEET--------------TSSEEEEEETTTCC
T ss_pred EEEECCCCcccccceeEEEECCEEEEecC--------------CCCeEEEEECCCCc
Confidence 32222211111 12244455888775532 14689999999875
No 33
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.92 E-value=0.056 Score=55.96 Aligned_cols=195 Identities=13% Similarity=0.048 Sum_probs=105.9
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~ 149 (643)
.++.+.|. +..||+.|+. -+.+++||+.+++........ . .-.+++.. +..||+.|..
T Consensus 35 ~~~~~s~d-g~~l~~~~~~---------d~~i~v~d~~~~~~~~~~~~~--~--~v~~~~~spdg~~l~~~~~~------ 94 (391)
T 1l0q_A 35 MGAVISPD-GTKVYVANAH---------SNDVSIIDTATNNVIATVPAG--S--SPQGVAVSPDGKQVYVTNMA------ 94 (391)
T ss_dssp EEEEECTT-SSEEEEEEGG---------GTEEEEEETTTTEEEEEEECS--S--SEEEEEECTTSSEEEEEETT------
T ss_pred ceEEECCC-CCEEEEECCC---------CCeEEEEECCCCeEEEEEECC--C--CccceEECCCCCEEEEEECC------
Confidence 45555552 3456676652 247899999888765433221 1 22233332 4567776542
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
-..+++||+.+++...... ....-+.++.. ++.||+.++. ...+++||+.+.+.......
T Consensus 95 -----~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~---------~~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 95 -----SSTLSVIDTTSNTVAGTVK----TGKSPLGLALSPDGKKLYVTNNG---------DKTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp -----TTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEEC
T ss_pred -----CCEEEEEECCCCeEEEEEe----CCCCcceEEECCCCCEEEEEeCC---------CCEEEEEECCCCcEEEEEec
Confidence 1468999999887654432 11122333333 3467776643 35789999988765544332
Q ss_pred CCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE
Q 006473 228 FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~ 305 (643)
.. .-..++.. +..||+.++..+. +++||+.+.+....... ...-.++++.
T Consensus 157 -----~~--~~~~~~~~~dg~~l~~~~~~~~~----------------v~~~d~~~~~~~~~~~~-----~~~~~~~~~~ 208 (391)
T 1l0q_A 157 -----GR--SPKGIAVTPDGTKVYVANFDSMS----------------ISVIDTVTNSVIDTVKV-----EAAPSGIAVN 208 (391)
T ss_dssp -----CS--SEEEEEECTTSSEEEEEETTTTE----------------EEEEETTTTEEEEEEEC-----SSEEEEEEEC
T ss_pred -----CC--CcceEEECCCCCEEEEEeCCCCE----------------EEEEECCCCeEEEEEec-----CCCccceEEC
Confidence 11 11233333 4567777665433 88999988765544321 1122333443
Q ss_pred -CCeEEEeccccccccCccccccccCCcEEEEECCCCcE
Q 006473 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (643)
+++.+++++... ..+.|++||+.+.+-
T Consensus 209 ~~g~~l~~~~~~~-----------~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 209 PEGTKAYVTNVDK-----------YFNTVSMIDTGTNKI 236 (391)
T ss_dssp TTSSEEEEEEECS-----------SCCEEEEEETTTTEE
T ss_pred CCCCEEEEEecCc-----------CCCcEEEEECCCCeE
Confidence 444444444210 135699999987643
No 34
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.91 E-value=0.056 Score=57.53 Aligned_cols=206 Identities=11% Similarity=0.006 Sum_probs=113.1
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CC-EEEEEeCccCCCCCCc
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KN-YLYIFGGEFTSPNQER 151 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~-~iyvfGG~~~~~~~~~ 151 (643)
+...| +++.+++++. ++. ...++++|+.+++...+.... ....+.+.. ++ .|++.+....
T Consensus 184 ~~~Sp--dg~~la~~s~--~~~----~~~i~~~d~~tg~~~~l~~~~----~~~~~~~~spdg~~la~~~~~~g------ 245 (415)
T 2hqs_A 184 PAWSP--DGSKLAYVTF--ESG----RSALVIQTLANGAVRQVASFP----RHNGAPAFSPDGSKLAFALSKTG------ 245 (415)
T ss_dssp EEECT--TSSEEEEEEC--TTS----SCEEEEEETTTCCEEEEECCS----SCEEEEEECTTSSEEEEEECTTS------
T ss_pred eEEcC--CCCEEEEEEe--cCC----CcEEEEEECCCCcEEEeecCC----CcccCEEEcCCCCEEEEEEecCC------
Confidence 44444 4555666652 111 147999999999887765421 122222222 34 4554544321
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (643)
...+|++|+.+.....+.. .+ .......+ +++.+++++..+. ...+|++|+.+..-..+...
T Consensus 246 ---~~~i~~~d~~~~~~~~l~~--~~---~~~~~~~~spdg~~l~~~s~~~g------~~~i~~~d~~~~~~~~l~~~-- 309 (415)
T 2hqs_A 246 ---SLNLYVMDLASGQIRQVTD--GR---SNNTEPTWFPDSQNLAFTSDQAG------RPQVYKVNINGGAPQRITWE-- 309 (415)
T ss_dssp ---SCEEEEEETTTCCEEECCC--CS---SCEEEEEECTTSSEEEEEECTTS------SCEEEEEETTSSCCEECCCS--
T ss_pred ---CceEEEEECCCCCEEeCcC--CC---CcccceEECCCCCEEEEEECCCC------CcEEEEEECCCCCEEEEecC--
Confidence 2579999999988766543 11 11223333 4555555543211 34799999988765444322
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CC
Q 006473 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~ 307 (643)
.....+++.. ++..+++++.... ...++++|+.+.....+... . ...++++. ++
T Consensus 310 -----~~~~~~~~~spdG~~l~~~~~~~g-------------~~~i~~~d~~~~~~~~l~~~-----~-~~~~~~~spdg 365 (415)
T 2hqs_A 310 -----GSQNQDADVSSDGKFMVMVSSNGG-------------QQHIAKQDLATGGVQVLSST-----F-LDETPSLAPNG 365 (415)
T ss_dssp -----SSEEEEEEECTTSSEEEEEEECSS-------------CEEEEEEETTTCCEEECCCS-----S-SCEEEEECTTS
T ss_pred -----CCcccCeEECCCCCEEEEEECcCC-------------ceEEEEEECCCCCEEEecCC-----C-CcCCeEEcCCC
Confidence 1122223322 4554445443211 24689999998887665431 1 22233333 67
Q ss_pred eEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+.+++++.... ...||++|+.+.....|..
T Consensus 366 ~~l~~~s~~~~-----------~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 366 TMVIYSSSQGM-----------GSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp SEEEEEEEETT-----------EEEEEEEETTSCCEEECCC
T ss_pred CEEEEEEcCCC-----------ccEEEEEECCCCcEEEeeC
Confidence 77777765320 2369999999887777655
No 35
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.84 E-value=0.49 Score=47.65 Aligned_cols=208 Identities=14% Similarity=0.089 Sum_probs=105.0
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~ 149 (643)
+.+++.|. ++.||+.... +....-.+.++++|+.+.+....... ....+.++.. ++.+|+.++.
T Consensus 44 ~~~~~s~d-g~~l~~~~~~---~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~------ 109 (353)
T 3vgz_A 44 YEMAYSQQ-ENALWLATSQ---SRKLDKGGVVYRLDPVTLEVTQAIHN----DLKPFGATINNTTQTLWFGNTV------ 109 (353)
T ss_dssp EEEEEETT-TTEEEEEECC---CTTTEESEEEEEECTTTCCEEEEEEE----SSCCCSEEEETTTTEEEEEETT------
T ss_pred cceEECCC-CCEEEEEcCC---CcCCCCCccEEEEcCCCCeEEEEEec----CCCcceEEECCCCCEEEEEecC------
Confidence 45556652 4577766532 11111245799999998865433211 1112233333 4568887653
Q ss_pred CcceecCeEEEEECCCCcEEE-eccCCCCC-----CCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQ-LNLKGCPS-----PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~-~~~~g~P~-----~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
-+.+++||+.+.+-.. +....... +..-+.+++. +++||+.+... ...+++||+.+.+-
T Consensus 110 -----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--------~~~i~~~d~~~~~~ 176 (353)
T 3vgz_A 110 -----NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK--------ESVIWVVDGGNIKL 176 (353)
T ss_dssp -----TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS--------SCEEEEEETTTTEE
T ss_pred -----CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC--------CceEEEEcCCCCce
Confidence 2468999998876433 22211111 1112333443 45677765321 24699999987654
Q ss_pred EEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCcee
Q 006473 222 QEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (643)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g 299 (643)
...-.. ....-++++.. +..||+... . ..+++||+.+.+-......+........
T Consensus 177 ~~~~~~------~~~~~~~~~~s~dg~~l~~~~~-~----------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 177 KTAIQN------TGKMSTGLALDSEGKRLYTTNA-D----------------GELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp EEEECC------CCTTCCCCEEETTTTEEEEECT-T----------------SEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred EEEecC------CCCccceEEECCCCCEEEEEcC-C----------------CeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 332221 11111223333 556666543 2 2477899887754433322111112222
Q ss_pred eEEEEE--CCeEEEeccccccccCccccccccCCcEEEEECCCCcE
Q 006473 300 FSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 300 ~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (643)
.++++. ++.+|+.... .+.|++||+.+.+.
T Consensus 234 ~~~~~s~dg~~l~~~~~~--------------~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 234 INISLDTARQRAFITDSK--------------AAEVLVVDTRNGNI 265 (353)
T ss_dssp EEEEEETTTTEEEEEESS--------------SSEEEEEETTTCCE
T ss_pred ceEEECCCCCEEEEEeCC--------------CCEEEEEECCCCcE
Confidence 344554 4456655422 25699999987654
No 36
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.80 E-value=0.14 Score=50.49 Aligned_cols=194 Identities=7% Similarity=-0.012 Sum_probs=100.5
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~ 149 (643)
-+.+++.+ ++.||+.... .+.+++||+ ++....+..+. ....-+.++.. ++.||+....
T Consensus 101 ~~~i~~~~--~g~l~v~~~~---------~~~i~~~d~-~g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------ 160 (299)
T 2z2n_A 101 PYGITEGP--NGDIWFTEMN---------GNRIGRITD-DGKIREYELPN--KGSYPSFITLGSDNALWFTENQ------ 160 (299)
T ss_dssp EEEEEECT--TSCEEEEETT---------TTEEEEECT-TCCEEEEECSS--TTCCEEEEEECTTSCEEEEETT------
T ss_pred ceeeEECC--CCCEEEEecC---------CceEEEECC-CCCEEEecCCC--CCCCCceEEEcCCCCEEEEeCC------
Confidence 34455554 5677775431 136888998 66666553221 11223344444 5688886521
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
.+.+++||+ +.+...+.... . ...-+++++. ++.||+.... .+.+++||+ +..+..+....
T Consensus 161 -----~~~i~~~~~-~g~~~~~~~~~-~-~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~-~g~~~~~~~~~ 222 (299)
T 2z2n_A 161 -----NNAIGRITE-SGDITEFKIPT-P-ASGPVGITKGNDDALWFVEII---------GNKIGRITT-SGEITEFKIPT 222 (299)
T ss_dssp -----TTEEEEECT-TCCEEEEECSS-T-TCCEEEEEECTTSSEEEEETT---------TTEEEEECT-TCCEEEEECSS
T ss_pred -----CCEEEEEcC-CCcEEEeeCCC-C-CCcceeEEECCCCCEEEEccC---------CceEEEECC-CCcEEEEECCC
Confidence 246899999 77776653211 1 1112233333 4678775421 356889999 77776553221
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECC
Q 006473 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKK 307 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~ 307 (643)
+ ...-++++.. ++.||+...... .+++||+ +.+...+...+. ...-.++++.++
T Consensus 223 ----~-~~~~~~i~~~~~g~l~v~~~~~~----------------~i~~~d~-~g~~~~~~~~~~---~~~~~~i~~~~g 277 (299)
T 2z2n_A 223 ----P-NARPHAITAGAGIDLWFTEWGAN----------------KIGRLTS-NNIIEEYPIQIK---SAEPHGICFDGE 277 (299)
T ss_dssp ----T-TCCEEEEEECSTTCEEEEETTTT----------------EEEEEET-TTEEEEEECSSS---SCCEEEEEECSS
T ss_pred ----C-CCCceeEEECCCCCEEEeccCCc----------------eEEEECC-CCceEEEeCCCC---CCccceEEecCC
Confidence 1 1111233333 567887653322 3788898 445444432111 112234444567
Q ss_pred eEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.||+... .+.|++|++.+++
T Consensus 278 ~l~v~~~---------------~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 278 TIWFAME---------------CDKIGKLTLIKDN 297 (299)
T ss_dssp CEEEEET---------------TTEEEEEEEC---
T ss_pred CEEEEec---------------CCcEEEEEcCccc
Confidence 7777643 1348888887653
No 37
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.76 E-value=0.032 Score=55.89 Aligned_cols=155 Identities=7% Similarity=0.001 Sum_probs=100.2
Q ss_pred eeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCcee
Q 006473 127 AHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVR 206 (643)
Q Consensus 127 ~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~ 206 (643)
...+...++.||+..|.. ..+.++|+.+++=..-. ++..-.+.+++..+++||+....
T Consensus 57 tqGL~~~~~~Ly~stG~~-----------g~v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~-------- 114 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQ-----------GTLRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWT-------- 114 (268)
T ss_dssp EEEEEEETTEEEEEETTT-----------TEEEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESS--------
T ss_pred cceEEEECCEEEEEcCCC-----------CEEEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEcc--------
Confidence 355566689999999963 34889999988643221 23445667788889999998543
Q ss_pred eeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 207 YYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 207 ~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
.+.+++||+.+.+-. ... +.+-.+.+++..+..||+.-| + +.++++|+.+.+-..
T Consensus 115 -~~~v~V~D~~Tl~~~--~ti-----~~~~eGwGLt~Dg~~L~vSdG-s----------------~~l~~iDp~T~~v~~ 169 (268)
T 3nok_A 115 -EGLLFTWSGMPPQRE--RTT-----RYSGEGWGLCYWNGKLVRSDG-G----------------TMLTFHEPDGFALVG 169 (268)
T ss_dssp -SCEEEEEETTTTEEE--EEE-----ECSSCCCCEEEETTEEEEECS-S----------------SEEEEECTTTCCEEE
T ss_pred -CCEEEEEECCcCcEE--EEE-----eCCCceeEEecCCCEEEEECC-C----------------CEEEEEcCCCCeEEE
Confidence 468999999887533 222 122345667777889999876 3 248999999876554
Q ss_pred eccCCCCCCCc-eeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 287 VKKIGMPPGPR-AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 287 l~~~g~~P~~R-~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.-..+.-|.+. .---+.+.+++||+-- . ..+.|.+.|+.+.+
T Consensus 170 ~I~V~~~g~~v~~lNeLe~~dG~lyanv-w-------------~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 170 AVQVKLRGQPVELINELECANGVIYANI-W-------------HSSDVLEIDPATGT 212 (268)
T ss_dssp EEECEETTEECCCEEEEEEETTEEEEEE-T-------------TCSEEEEECTTTCB
T ss_pred EEEeCCCCcccccccccEEeCCEEEEEE-C-------------CCCeEEEEeCCCCc
Confidence 32221112221 1123455688877422 1 24789999999875
No 38
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.73 E-value=0.39 Score=47.12 Aligned_cols=199 Identities=6% Similarity=-0.035 Sum_probs=109.1
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~ 149 (643)
-+++++.+ ++.||+... . .+.+++||+. ..+..+..+. ....-++++.. ++.||+....
T Consensus 17 ~~~i~~d~--~g~l~v~~~----~-----~~~v~~~d~~-~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------ 76 (299)
T 2z2n_A 17 PYGITVSD--KGKVWITQH----K-----ANMISCINLD-GKITEYPLPT--PDAKVMCLTISSDGEVWFTENA------ 76 (299)
T ss_dssp EEEEEECT--TSCEEEEET----T-----TTEEEEECTT-CCEEEEECSS--TTCCEEEEEECTTSCEEEEETT------
T ss_pred ccceEECC--CCCEEEEec----C-----CCcEEEEcCC-CCeEEecCCc--ccCceeeEEECCCCCEEEeCCC------
Confidence 35555554 677887543 1 1468999998 7777664321 11223334433 5778887542
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCC-CCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCP-SPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P-~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
...+++||+. ..+..+.. | ....-++++.. ++.||+.... ...+++||+ +.....+...
T Consensus 77 -----~~~i~~~~~~-g~~~~~~~---~~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~d~-~g~~~~~~~~ 137 (299)
T 2z2n_A 77 -----ANKIGRITKK-GIIKEYTL---PNPDSAPYGITEGPNGDIWFTEMN---------GNRIGRITD-DGKIREYELP 137 (299)
T ss_dssp -----TTEEEEECTT-SCEEEEEC---SSTTCCEEEEEECTTSCEEEEETT---------TTEEEEECT-TCCEEEEECS
T ss_pred -----CCeEEEECCC-CcEEEEeC---CCcCCCceeeEECCCCCEEEEecC---------CceEEEECC-CCCEEEecCC
Confidence 1458889886 55555442 2 12223344444 5678876432 246888998 6666554332
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-
Q 006473 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~- 305 (643)
. ....-.+++.. ++.||+..... ..+++||+ +.+...+.... ....-.++++.
T Consensus 138 ~-----~~~~~~~i~~~~~g~l~v~~~~~----------------~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~~~ 192 (299)
T 2z2n_A 138 N-----KGSYPSFITLGSDNALWFTENQN----------------NAIGRITE-SGDITEFKIPT---PASGPVGITKGN 192 (299)
T ss_dssp S-----TTCCEEEEEECTTSCEEEEETTT----------------TEEEEECT-TCCEEEEECSS---TTCCEEEEEECT
T ss_pred C-----CCCCCceEEEcCCCCEEEEeCCC----------------CEEEEEcC-CCcEEEeeCCC---CCCcceeEEECC
Confidence 1 11122334444 66788764322 23888998 66666543211 11122344444
Q ss_pred CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
++.+|+.... .+.|++||+ +.++..+..
T Consensus 193 ~g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~~ 220 (299)
T 2z2n_A 193 DDALWFVEII--------------GNKIGRITT-SGEITEFKI 220 (299)
T ss_dssp TSSEEEEETT--------------TTEEEEECT-TCCEEEEEC
T ss_pred CCCEEEEccC--------------CceEEEECC-CCcEEEEEC
Confidence 4677776432 245899999 777766543
No 39
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.67 E-value=0.19 Score=50.27 Aligned_cols=194 Identities=12% Similarity=0.067 Sum_probs=97.1
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCc
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~ 151 (643)
+...| ++.+++.|+. -+.+.+||+.+.+-...-... ......+.+ ++.+++.|+..
T Consensus 71 ~~~~~--~~~~l~s~~~---------d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~d------- 128 (312)
T 4ery_A 71 VAWSS--DSNLLVSASD---------DKTLKIWDVSSGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFD------- 128 (312)
T ss_dssp EEECT--TSSEEEEEET---------TSEEEEEETTTCCEEEEEECC----SSCEEEEEECSSSSEEEEEETT-------
T ss_pred EEEcC--CCCEEEEECC---------CCEEEEEECCCCcEEEEEcCC----CCCEEEEEEcCCCCEEEEEeCC-------
Confidence 34444 4566666662 236788888877543221111 111122222 45566677643
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (643)
..+.+||+.+.+-...-. .....-..+.+ ++.+++.|+.+ ..+.+||+.+.+....-...
T Consensus 129 ----~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~~wd~~~~~~~~~~~~~- 190 (312)
T 4ery_A 129 ----ESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYD---------GLCRIWDTASGQCLKTLIDD- 190 (312)
T ss_dssp ----SCEEEEETTTCCEEEEEC----CCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTCCEEEEECCS-
T ss_pred ----CcEEEEECCCCEEEEEec----CCCCcEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeeEEecc-
Confidence 357889988765432211 11111222333 45666777642 45888998876543222110
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCce-eeEEEEECC
Q 006473 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA-GFSMCVHKK 307 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~-g~s~~~~~~ 307 (643)
..+.. ..+... ++..++.|+.++. +.+||+.+..-...-. +....... .......++
T Consensus 191 ---~~~~~-~~~~~~~~~~~l~~~~~d~~----------------i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 191 ---DNPPV-SFVKFSPNGKYILAATLDNT----------------LKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGG 249 (312)
T ss_dssp ---SCCCE-EEEEECTTSSEEEEEETTTE----------------EEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSSS
T ss_pred ---CCCce-EEEEECCCCCEEEEEcCCCe----------------EEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCCC
Confidence 11111 112222 5666677766544 7788887765433221 11111111 112222356
Q ss_pred eEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.+++.|+.. +.|.+||+.+..
T Consensus 250 ~~l~sg~~d--------------g~i~vwd~~~~~ 270 (312)
T 4ery_A 250 KWIVSGSED--------------NLVYIWNLQTKE 270 (312)
T ss_dssp CEEEECCTT--------------SCEEEEETTTCC
T ss_pred cEEEEECCC--------------CEEEEEECCCch
Confidence 777777753 358999998764
No 40
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.59 E-value=0.48 Score=47.74 Aligned_cols=184 Identities=11% Similarity=0.076 Sum_probs=95.4
Q ss_pred ccEEEEECCCCcEE-EecCCCCCC-----CceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEec
Q 006473 101 GDLYRYDVEKQEWK-VISSPNSPP-----PRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN 172 (643)
Q Consensus 101 ndv~~yd~~~~~W~-~l~s~~~P~-----pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~ 172 (643)
+.+++||+.+.+-. .+....... +..-+.++.. ++.||+.+... -..+++||+.+.+-...-
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----------~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----------ESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----------SCEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----------CceEEEEcCCCCceEEEe
Confidence 47899999887643 333221111 1122334443 56788776321 246999999887644332
Q ss_pred cCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEE
Q 006473 173 LKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEV 248 (643)
Q Consensus 173 ~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~i 248 (643)
. . ....-+.+++. +++||+... .+.+++||+.+.+-........ . .......+++.. ++.|
T Consensus 181 ~--~-~~~~~~~~~~s~dg~~l~~~~~----------~~~i~~~d~~~~~~~~~~~~~~-~-~~~~~~~~~~~s~dg~~l 245 (353)
T 3vgz_A 181 Q--N-TGKMSTGLALDSEGKRLYTTNA----------DGELITIDTADNKILSRKKLLD-D-GKEHFFINISLDTARQRA 245 (353)
T ss_dssp C--C-CCTTCCCCEEETTTTEEEEECT----------TSEEEEEETTTTEEEEEEECCC-S-SSCCCEEEEEEETTTTEE
T ss_pred c--C-CCCccceEEECCCCCEEEEEcC----------CCeEEEEECCCCeEEEEEEcCC-C-CCCcccceEEECCCCCEE
Confidence 2 0 11112233333 456776532 2468889998775433222210 0 111112223333 5567
Q ss_pred EEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--CCeEEEeccccccccCccccc
Q 006473 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIM 326 (643)
Q Consensus 249 yv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~ 326 (643)
|+.+... ..+++||+.+.+....-..+ .+ .++++. ++.+|+.+..
T Consensus 246 ~~~~~~~----------------~~v~~~d~~~~~~~~~~~~~---~~---~~~~~s~dg~~l~v~~~~----------- 292 (353)
T 3vgz_A 246 FITDSKA----------------AEVLVVDTRNGNILAKVAAP---ES---LAVLFNPARNEAYVTHRQ----------- 292 (353)
T ss_dssp EEEESSS----------------SEEEEEETTTCCEEEEEECS---SC---CCEEEETTTTEEEEEETT-----------
T ss_pred EEEeCCC----------------CEEEEEECCCCcEEEEEEcC---CC---ceEEECCCCCEEEEEECC-----------
Confidence 7765432 34889999887665443322 22 224443 3457776542
Q ss_pred cccCCcEEEEECCCCcEEE
Q 006473 327 SLFLNELYGFQLDNHRWYP 345 (643)
Q Consensus 327 ~~~~ndl~~yd~~t~~W~~ 345 (643)
-+.|++||+.+.+...
T Consensus 293 ---~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 293 ---AGKVSVIDAKSYKVVK 308 (353)
T ss_dssp ---TTEEEEEETTTTEEEE
T ss_pred ---CCeEEEEECCCCeEEE
Confidence 2469999998876543
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.57 E-value=0.11 Score=51.79 Aligned_cols=194 Identities=13% Similarity=0.052 Sum_probs=101.2
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
++...| ++.++++|+. -+.+.+||+.+.+...+....... ..-.+++.. ++.+++.|+..
T Consensus 102 ~~~~~~--~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d------- 162 (337)
T 1gxr_A 102 SCKLLP--DGCTLIVGGE---------ASTLSIWDLAAPTPRIKAELTSSA-PACYALAISPDSKVCFSCCSD------- 162 (337)
T ss_dssp EEEECT--TSSEEEEEES---------SSEEEEEECCCC--EEEEEEECSS-SCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEEcC--CCCEEEEEcC---------CCcEEEEECCCCCcceeeecccCC-CceEEEEECCCCCEEEEEeCC-------
Confidence 344444 5666777762 247889999988754332211111 111222222 45566666642
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (643)
..+.+||+.+.+....-. .. ......+.+ ++.+++.|+. -..+.+||+.+..-......
T Consensus 163 ----g~v~~~d~~~~~~~~~~~--~~--~~~i~~~~~~~~~~~l~~~~~---------dg~i~~~d~~~~~~~~~~~~-- 223 (337)
T 1gxr_A 163 ----GNIAVWDLHNQTLVRQFQ--GH--TDGASCIDISNDGTKLWTGGL---------DNTVRSWDLREGRQLQQHDF-- 223 (337)
T ss_dssp ----SCEEEEETTTTEEEEEEC--CC--SSCEEEEEECTTSSEEEEEET---------TSEEEEEETTTTEEEEEEEC--
T ss_pred ----CcEEEEeCCCCceeeeee--cc--cCceEEEEECCCCCEEEEEec---------CCcEEEEECCCCceEeeecC--
Confidence 358889998876543322 11 111222333 5556666664 24688999887653332221
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CC
Q 006473 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~ 307 (643)
+.+ -.+++.. ++.++++|+.++. +.+||+.+..-..+.. ....-.++++. ++
T Consensus 224 ---~~~--v~~~~~s~~~~~l~~~~~~~~----------------i~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~ 277 (337)
T 1gxr_A 224 ---TSQ--IFSLGYCPTGEWLAVGMESSN----------------VEVLHVNKPDKYQLHL-----HESCVLSLKFAYCG 277 (337)
T ss_dssp ---SSC--EEEEEECTTSSEEEEEETTSC----------------EEEEETTSSCEEEECC-----CSSCEEEEEECTTS
T ss_pred ---CCc--eEEEEECCCCCEEEEEcCCCc----------------EEEEECCCCCeEEEcC-----CccceeEEEECCCC
Confidence 111 1223333 5667777766544 7788887765333321 11122334443 56
Q ss_pred eEEEeccccccccCccccccccCCcEEEEECCCCcEE
Q 006473 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (643)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (643)
++++.|+.. +.|.+||+.+..-.
T Consensus 278 ~~l~~~~~d--------------g~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 278 KWFVSTGKD--------------NLLNAWRTPYGASI 300 (337)
T ss_dssp SEEEEEETT--------------SEEEEEETTTCCEE
T ss_pred CEEEEecCC--------------CcEEEEECCCCeEE
Confidence 677777643 35899999876543
No 42
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.54 E-value=0.1 Score=53.24 Aligned_cols=148 Identities=11% Similarity=0.103 Sum_probs=75.5
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
++.+.| ++.++++|+. -+.+++||+.+.+|..+..... ....-.+++.. ++.+++.|+..
T Consensus 13 ~~~~s~--~~~~l~~~~~---------d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d------- 73 (372)
T 1k8k_C 13 CHAWNK--DRTQIAICPN---------NHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTD------- 73 (372)
T ss_dssp EEEECT--TSSEEEEECS---------SSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEeC---------CCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEEcCC-------
Confidence 444555 6778888873 2478899999987665543211 11112223333 55666666642
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc-eEEeccCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIKPRF 228 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~-W~~v~~~~ 228 (643)
..+.+||+.+..+..... .........++.+ ++.+++.|+.+ ..+.+||+.+.. |..+....
T Consensus 74 ----g~i~vwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~~~~~~ 138 (372)
T 1k8k_C 74 ----RNAYVWTLKGRTWKPTLV--ILRINRAARCVRWAPNEKKFAVGSGS---------RVISICYFEQENDWWVCKHIK 138 (372)
T ss_dssp ----SCEEEEEEETTEEEEEEE--CCCCSSCEEEEEECTTSSEEEEEETT---------SSEEEEEEETTTTEEEEEEEC
T ss_pred ----CeEEEEECCCCeeeeeEE--eecCCCceeEEEECCCCCEEEEEeCC---------CEEEEEEecCCCcceeeeeee
Confidence 357788888887765433 1111112222333 45666666642 346666665543 33332221
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEcCCCCC
Q 006473 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~ 257 (643)
. +....-.++... ++.+++.|+.++.
T Consensus 139 ~---~~~~~i~~~~~~~~~~~l~~~~~dg~ 165 (372)
T 1k8k_C 139 K---PIRSTVLSLDWHPNSVLLAAGSCDFK 165 (372)
T ss_dssp T---TCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred c---ccCCCeeEEEEcCCCCEEEEEcCCCC
Confidence 0 111122223333 5667777776654
No 43
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.52 E-value=0.22 Score=57.48 Aligned_cols=188 Identities=10% Similarity=-0.019 Sum_probs=101.5
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
-|++|++.+..+..+..........-++++.. ++.||| |.. ...+++||+.+++++.+...+.+. .
T Consensus 384 Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~-----------~~Gl~~~~~~~~~~~~~~~~~~~~-~ 450 (781)
T 3v9f_A 384 GINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTY-----------LGNISYYNTRLKKFQIIELEKNEL-L 450 (781)
T ss_dssp CEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EET-----------TEEEEEECSSSCEEEECCSTTTCC-C
T ss_pred cEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-Eec-----------cCCEEEEcCCCCcEEEeccCCCCC-C
Confidence 47889998877765532111111222333333 567777 321 145889999999998875421111 1
Q ss_pred ceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCC
Q 006473 181 SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (643)
Q Consensus 181 s~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~ 258 (643)
.-.+++.. ++.||+- . ...|++||+.+.+|..+........+.. .-.+++.. ++.|+|- .....
T Consensus 451 ~v~~i~~d~~g~lwig-t----------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~-~i~~i~~d~~g~lWig-t~~~G- 516 (781)
T 3v9f_A 451 DVRVFYEDKNKKIWIG-T----------HAGVFVIDLASKKVIHHYDTSNSQLLEN-FVRSIAQDSEGRFWIG-TFGGG- 516 (781)
T ss_dssp CEEEEEECTTSEEEEE-E----------TTEEEEEESSSSSCCEEECTTTSSCSCS-CEEEEEECTTCCEEEE-ESSSC-
T ss_pred eEEEEEECCCCCEEEE-E----------CCceEEEeCCCCeEEecccCcccccccc-eeEEEEEcCCCCEEEE-EcCCC-
Confidence 11222222 5677763 2 1458999999998887764421111111 11222222 5666653 22222
Q ss_pred CCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcE-EEE
Q 006473 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL-YGF 336 (643)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl-~~y 336 (643)
+++|++.+.++.........|.... .+++.. ++.|+|... . -| ++|
T Consensus 517 ---------------l~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~-~---------------Glv~~~ 564 (781)
T 3v9f_A 517 ---------------VGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG-E---------------GLVCFP 564 (781)
T ss_dssp ---------------EEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET-T---------------EEEEES
T ss_pred ---------------EEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC-C---------------CceEEE
Confidence 7899999999888754322232222 223322 466666432 2 26 889
Q ss_pred ECCCCcEEEeEe
Q 006473 337 QLDNHRWYPLEL 348 (643)
Q Consensus 337 d~~t~~W~~l~~ 348 (643)
|+.++++..+..
T Consensus 565 d~~~~~~~~~~~ 576 (781)
T 3v9f_A 565 SARNFDYQVFQR 576 (781)
T ss_dssp CTTTCCCEEECG
T ss_pred CCCCCcEEEccc
Confidence 998888766543
No 44
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.076 Score=54.14 Aligned_cols=191 Identities=9% Similarity=0.031 Sum_probs=100.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--C--CEEEEEeCccCCCCCCcceecC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYK 156 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~--~~iyvfGG~~~~~~~~~~~~~~ 156 (643)
++.+++.|+. + +.+.+|++....+..+.... .......++.+ . +.+++.|+.. .
T Consensus 22 ~~~~l~~~~~--d-------g~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d-----------g 79 (379)
T 3jrp_A 22 YGKRLATCSS--D-------KTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYD-----------G 79 (379)
T ss_dssp SSSEEEEEET--T-------SCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT-----------S
T ss_pred CCCEEEEEEC--C-------CcEEEEecCCCcceeeeEec--CCCCcEEEEEeCCCCCCCEEEEeccC-----------C
Confidence 5677777772 2 35788888777776554322 11112222333 2 5677777653 3
Q ss_pred eEEEEECCCCcEEEeccCCCCCCCceeEEEEE--C--CEEEEEeeeecCCCceeeeccEEEEEcCCCce-EEeccCCCCC
Q 006473 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRFGSM 231 (643)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~--~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~~~~ 231 (643)
.+.+||+.++.|..+... ........++.+ . +.+++.|+.+ ..+.+||+.+... ........
T Consensus 80 ~v~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~~~-- 146 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVH--AVHSASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKENGTTSPIIIDAH-- 146 (379)
T ss_dssp CEEEEEEETTEEEEEEEE--CCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCTTSCCCEEEEECC--
T ss_pred EEEEEEcCCCceeEeeee--cCCCcceEEEEeCCCCCCCEEEEecCC---------CcEEEEecCCCCceeeEEecCC--
Confidence 477888888888766542 222222233333 2 5667777642 4577888876532 11111100
Q ss_pred CCCCccceeEEEe--------------CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC--CCeeEEeccCCCCCC
Q 006473 232 WPSPRSGFQFFVY--------------QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR--TWEWSKVKKIGMPPG 295 (643)
Q Consensus 232 ~P~~R~~~s~~~~--------------~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~--t~~W~~l~~~g~~P~ 295 (643)
..+. .++... ++.+++.|+.++. +.+||+. ...|..+..... .
T Consensus 147 -~~~v--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~~~~~~~~~~~--h 205 (379)
T 3jrp_A 147 -AIGV--NSASWAPATIEEDGEHNGTKESRKFVTGGADNL----------------VKIWKYNSDAQTYVLESTLEG--H 205 (379)
T ss_dssp -TTCE--EEEEECCCC----------CTTCEEEEEETTSC----------------EEEEEEETTTTEEEEEEEECC--C
T ss_pred -CCce--EEEEEcCccccccccccCCCCCCEEEEEeCCCe----------------EEEEEecCCCcceeeEEEEec--c
Confidence 1111 122222 3677888877654 5666654 344555443211 1
Q ss_pred CceeeEEEEE-C---CeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 296 PRAGFSMCVH-K---KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 296 ~R~g~s~~~~-~---~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
...-.++++. + +.+++.|+.. ..|.+||+.+.
T Consensus 206 ~~~v~~~~~sp~~~~~~~l~s~~~d--------------g~i~iwd~~~~ 241 (379)
T 3jrp_A 206 SDWVRDVAWSPTVLLRSYLASVSQD--------------RTCIIWTQDNE 241 (379)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETT--------------SCEEEEEESST
T ss_pred cCcEeEEEECCCCCCCCeEEEEeCC--------------CEEEEEeCCCC
Confidence 1122334444 3 6788887754 34888887764
No 45
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=96.52 E-value=0.49 Score=47.32 Aligned_cols=208 Identities=10% Similarity=0.003 Sum_probs=102.6
Q ss_pred CCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCC
Q 006473 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (643)
Q Consensus 69 R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~ 147 (643)
..+-+.+..+. ++.||+..-. .+.|++||+.++....+..+. +. .+++.. ++.||+..+
T Consensus 13 ~~~Egp~w~~~-~~~l~~~d~~---------~~~i~~~d~~~~~~~~~~~~~----~~-~~i~~~~dG~l~v~~~----- 72 (297)
T 3g4e_A 13 RCGESPVWEEV-SNSLLFVDIP---------AKKVCRWDSFTKQVQRVTMDA----PV-SSVALRQSGGYVATIG----- 72 (297)
T ss_dssp SBEEEEEEETT-TTEEEEEETT---------TTEEEEEETTTCCEEEEECSS----CE-EEEEEBTTSSEEEEET-----
T ss_pred ccccCCeEECC-CCEEEEEECC---------CCEEEEEECCCCcEEEEeCCC----ce-EEEEECCCCCEEEEEC-----
Confidence 34455555543 4678877651 247899999988766554321 11 222332 556666531
Q ss_pred CCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCC---ceeeeccEEEEEcCCCceE
Q 006473 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLR---EVRYYNDLYVFDLDQFKWQ 222 (643)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~---~~~~~~dv~~yD~~t~~W~ 222 (643)
+.+++||+.+.+++.+.......+......+.+ +++||+ |....... .......||++++.. +..
T Consensus 73 --------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~-~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~ 142 (297)
T 3g4e_A 73 --------TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFA-GTMAEETAPAVLERHQGALYSLFPDH-HVK 142 (297)
T ss_dssp --------TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEE-EEEECCSBTTBCCTTCEEEEEECTTS-CEE
T ss_pred --------CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEE-ecCCcccccccccCCCcEEEEEECCC-CEE
Confidence 468999999999887754211112222222223 567765 33221100 001134688888753 333
Q ss_pred EeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeC--CCCeeEEeccCCCCCC-Cc
Q 006473 223 EIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP--RTWEWSKVKKIGMPPG-PR 297 (643)
Q Consensus 223 ~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~--~t~~W~~l~~~g~~P~-~R 297 (643)
.+... ...+ ..++.. +..||+...... .+++|+. .+............+. ..
T Consensus 143 ~~~~~----~~~p---ngi~~spdg~~lyv~~~~~~----------------~i~~~~~d~~~G~~~~~~~~~~~~~~~~ 199 (297)
T 3g4e_A 143 KYFDQ----VDIS---NGLDWSLDHKIFYYIDSLSY----------------SVDAFDYDLQTGQISNRRSVYKLEKEEQ 199 (297)
T ss_dssp EEEEE----ESBE---EEEEECTTSCEEEEEEGGGT----------------EEEEEEECTTTCCEEEEEEEEECCGGGC
T ss_pred EEeec----cccc---cceEEcCCCCEEEEecCCCC----------------cEEEEeccCCCCcccCcEEEEECCCCCC
Confidence 32211 0111 223333 446777754332 3677764 4444332111000111 11
Q ss_pred eeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCcE
Q 006473 298 AGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 298 ~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (643)
.-.++++- +++||+.... -+.|++||+.+.+.
T Consensus 200 ~p~g~~~d~~G~lwva~~~--------------~~~v~~~d~~tG~~ 232 (297)
T 3g4e_A 200 IPDGMCIDAEGKLWVACYN--------------GGRVIRLDPVTGKR 232 (297)
T ss_dssp EEEEEEEBTTSCEEEEEET--------------TTEEEEECTTTCCE
T ss_pred CCCeeEECCCCCEEEEEcC--------------CCEEEEEcCCCceE
Confidence 22345554 5777776421 13489999987654
No 46
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.37 E-value=0.28 Score=48.83 Aligned_cols=135 Identities=10% Similarity=0.120 Sum_probs=67.9
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCC-CCceeeEEEEE-C-CEEEEEeCccCCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP-PPRSAHQAVSW-K-NYLYIFGGEFTSPN 148 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P-~pRs~ha~~~~-~-~~iyvfGG~~~~~~ 148 (643)
.++++.+ ++.||+..+.. +......+.|++||+.++++..+..+... ....-++++.. + +.|||....
T Consensus 21 ~~~~~~~--~g~l~~~~~~~--~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~----- 91 (314)
T 1pjx_A 21 EGPVFDK--NGDFYIVAPEV--EVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR----- 91 (314)
T ss_dssp EEEEECT--TSCEEEEETTC--EETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred cCceECC--CCCEEEEEecc--ccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-----
Confidence 4555554 67888871100 00001235789999999988876531000 11112333333 4 788887641
Q ss_pred CCcceecCeEEEEECCCCcEEEe-ccCCCCCC-CceeEEEEE-CCEEEEEeeeecCC------CceeeeccEEEEEcCCC
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQL-NLKGCPSP-RSGHRMVLY-KHKIIVFGGFYDTL------REVRYYNDLYVFDLDQF 219 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~-~~~g~P~~-Rs~h~~~~~-~~~lyvfGG~~~~~------~~~~~~~dv~~yD~~t~ 219 (643)
+.+++||+. ++...+ .......+ ..-+.+++. ++.||+........ ........+++||+. .
T Consensus 92 -------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 92 -------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp -------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred -------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 358899998 777665 33111111 112233333 56788754321000 000112578999886 5
Q ss_pred ceEEe
Q 006473 220 KWQEI 224 (643)
Q Consensus 220 ~W~~v 224 (643)
+...+
T Consensus 163 ~~~~~ 167 (314)
T 1pjx_A 163 QMIQV 167 (314)
T ss_dssp CEEEE
T ss_pred CEEEe
Confidence 55444
No 47
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.36 E-value=0.43 Score=49.89 Aligned_cols=209 Identities=11% Similarity=0.045 Sum_probs=100.8
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.+|+.|+. -+.+++||+.+.+....-.. ....-.+++.. +..+|+.++.. ..+
T Consensus 180 ~~~~~~s~~~---------d~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~-----------~~i 236 (433)
T 3bws_A 180 HNELWVSQMQ---------ANAVHVFDLKTLAYKATVDL---TGKWSKILLYDPIRDLVYCSNWIS-----------EDI 236 (433)
T ss_dssp GTEEEEEEGG---------GTEEEEEETTTCCEEEEEEC---SSSSEEEEEEETTTTEEEEEETTT-----------TEE
T ss_pred CCEEEEEECC---------CCEEEEEECCCceEEEEEcC---CCCCeeEEEEcCCCCEEEEEecCC-----------CcE
Confidence 4556655551 24688999887654432111 11112233333 45677776531 468
Q ss_pred EEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcc
Q 006473 159 WMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (643)
Q Consensus 159 ~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (643)
++||+.+.+...... ....-++++.. ++..+++++...... ..--..+++||+.+.+-...... +..
T Consensus 237 ~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~dg~i~~~d~~~~~~~~~~~~-----~~~-- 304 (433)
T 3bws_A 237 SVIDRKTKLEIRKTD----KIGLPRGLLLSKDGKELYIAQFSASNQ-ESGGGRLGIYSMDKEKLIDTIGP-----PGN-- 304 (433)
T ss_dssp EEEETTTTEEEEECC----CCSEEEEEEECTTSSEEEEEEEESCTT-CSCCEEEEEEETTTTEEEEEEEE-----EEC--
T ss_pred EEEECCCCcEEEEec----CCCCceEEEEcCCCCEEEEEECCCCcc-ccCCCeEEEEECCCCcEEeeccC-----CCC--
Confidence 999998887654322 12222333332 444444555432110 00124788999987754333211 111
Q ss_pred ceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEecc
Q 006473 238 GFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGG 314 (643)
Q Consensus 238 ~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG 314 (643)
-.+++.. +..+|+.++..+. +.+||+.+.+-...-.. ...-.++++. +++.+++++
T Consensus 305 ~~~~~~~~~g~~l~~~~~~~~~----------------v~v~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~ 363 (433)
T 3bws_A 305 KRHIVSGNTENKIYVSDMCCSK----------------IEVYDLKEKKVQKSIPV-----FDKPNTIALSPDGKYLYVSC 363 (433)
T ss_dssp EEEEEECSSTTEEEEEETTTTE----------------EEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEE
T ss_pred cceEEECCCCCEEEEEecCCCE----------------EEEEECCCCcEEEEecC-----CCCCCeEEEcCCCCEEEEEe
Confidence 1122222 4478888766543 88899887654433221 1122344444 454444444
Q ss_pred ccccccCccc-cccccCCcEEEEECCCCcEEE
Q 006473 315 VVDMEMKGDV-IMSLFLNELYGFQLDNHRWYP 345 (643)
Q Consensus 315 ~~~~~~~~~~-~~~~~~ndl~~yd~~t~~W~~ 345 (643)
.......... ..+..-..|++||+.+.+...
T Consensus 364 ~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 364 RGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp CCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred cCCCccccccccccccceEEEEEECCCCcEEE
Confidence 3211000000 001112379999998876444
No 48
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.29 E-value=0.74 Score=45.05 Aligned_cols=200 Identities=8% Similarity=-0.025 Sum_probs=105.7
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~ 149 (643)
-+++++.+ ++.||+... + .+.|++||+. +++..+..+. ....-+.++.. ++.||+....
T Consensus 64 ~~~i~~~~--~g~l~v~~~----~-----~~~v~~~d~~-g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------ 123 (300)
T 2qc5_A 64 VMCLIVSS--LGDIWFTEN----G-----ANKIGKLSKK-GGFTEYPLPQ--PDSGPYGITEGLNGDIWFTQLN------ 123 (300)
T ss_dssp EEEEEECT--TSCEEEEET----T-----TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECSTTCEEEEETT------
T ss_pred ceeEEECC--CCCEEEEec----C-----CCeEEEECCC-CCeEEecCCC--CCCCCccceECCCCCEEEEccC------
Confidence 34455543 567777543 1 2468899988 7776554321 11223444443 6788887532
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
-..+++||+. .+...+... .....-+.+++. ++.||+.... ...+++||+ +.++..+....
T Consensus 124 -----~~~i~~~~~~-g~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~---------~~~i~~~~~-~g~~~~~~~~~ 185 (300)
T 2qc5_A 124 -----GDRIGKLTAD-GTIYEYDLP--NKGSYPAFITLGSDNALWFTENQ---------NNSIGRITN-TGKLEEYPLPT 185 (300)
T ss_dssp -----TTEEEEECTT-SCEEEEECS--STTCCEEEEEECTTSSEEEEETT---------TTEEEEECT-TCCEEEEECSS
T ss_pred -----CCeEEEECCC-CCEEEccCC--CCCCCceeEEECCCCCEEEEecC---------CCeEEEECC-CCcEEEeeCCC
Confidence 2468889987 666544321 011222333332 4667775321 246889998 66666554321
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-C
Q 006473 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~ 306 (643)
....-.+++.. ++.||+...... .+++|++ +..+....... ....-.++++. +
T Consensus 186 -----~~~~~~~i~~d~~g~l~v~~~~~~----------------~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~d~~ 240 (300)
T 2qc5_A 186 -----NAAAPVGITSGNDGALWFVEIMGN----------------KIGRITT-TGEISEYDIPT---PNARPHAITAGKN 240 (300)
T ss_dssp -----TTCCEEEEEECTTSSEEEEETTTT----------------EEEEECT-TCCEEEEECSS---TTCCEEEEEECST
T ss_pred -----CCCCcceEEECCCCCEEEEccCCC----------------EEEEEcC-CCcEEEEECCC---CCCCceEEEECCC
Confidence 11111233333 567887643322 3788888 55555543211 11122344443 5
Q ss_pred CeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 307 ~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
++||+.... .+.|++||+ +.+...+..
T Consensus 241 g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~~ 267 (300)
T 2qc5_A 241 SEIWFTEWG--------------ANQIGRITN-DNTIQEYQL 267 (300)
T ss_dssp TCEEEEETT--------------TTEEEEECT-TSCEEEEEC
T ss_pred CCEEEeccC--------------CCeEEEECC-CCcEEEEEC
Confidence 677776522 245899998 466665543
No 49
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=96.27 E-value=0.97 Score=44.33 Aligned_cols=208 Identities=10% Similarity=0.052 Sum_probs=108.0
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCC--CceeeEEEEE--CCEEEEEeCccCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP--PRSAHQAVSW--KNYLYIFGGEFTS 146 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~--pRs~ha~~~~--~~~iyvfGG~~~~ 146 (643)
-+++++.+ ++.||+.+.. .+.|++||+.......+....... ...-+.++.. ++.|||.+...
T Consensus 32 p~~v~~~~--~g~l~v~~~~---------~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-- 98 (286)
T 1q7f_A 32 PSGVAVNA--QNDIIVADTN---------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-- 98 (286)
T ss_dssp EEEEEECT--TCCEEEEEGG---------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG--
T ss_pred CceEEECC--CCCEEEEECC---------CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC--
Confidence 34555554 5678887551 246889998865544443211111 1123344442 67899886421
Q ss_pred CCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
...+.+||.....-..+.. +....-+.+++. ++.||+.... .+.|++||+.......+.
T Consensus 99 --------~~~i~~~d~~g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~~g~~~~~~~ 158 (286)
T 1q7f_A 99 --------THQIQIYNQYGQFVRKFGA---TILQHPRGVTVDNKGRIIVVECK---------VMRVIIFDQNGNVLHKFG 158 (286)
T ss_dssp --------GCEEEEECTTSCEEEEECT---TTCSCEEEEEECTTSCEEEEETT---------TTEEEEECTTSCEEEEEE
T ss_pred --------CCEEEEECCCCcEEEEecC---ccCCCceEEEEeCCCCEEEEECC---------CCEEEEEcCCCCEEEEeC
Confidence 2468889865444333432 111122334443 5678876432 256888987655444443
Q ss_pred cCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE
Q 006473 226 PRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (643)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~ 304 (643)
... ....| .++++. ++.||+.+.... .+++|++.......+...+.. ..-.++++
T Consensus 159 ~~~--~~~~p---~~i~~~~~g~l~v~~~~~~----------------~i~~~~~~g~~~~~~~~~g~~---~~p~~i~~ 214 (286)
T 1q7f_A 159 CSK--HLEFP---NGVVVNDKQEIFISDNRAH----------------CVKVFNYEGQYLRQIGGEGIT---NYPIGVGI 214 (286)
T ss_dssp CTT--TCSSE---EEEEECSSSEEEEEEGGGT----------------EEEEEETTCCEEEEESCTTTS---CSEEEEEE
T ss_pred CCC--ccCCc---EEEEECCCCCEEEEECCCC----------------EEEEEcCCCCEEEEEccCCcc---CCCcEEEE
Confidence 210 01111 233333 678888765433 388899866544444322211 12234444
Q ss_pred E-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 305 H-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 305 ~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
. ++++|+...... ..|.+||+....-..+..
T Consensus 215 d~~G~l~v~~~~~~-------------~~i~~~~~~g~~~~~~~~ 246 (286)
T 1q7f_A 215 NSNGEILIADNHNN-------------FNLTIFTQDGQLISALES 246 (286)
T ss_dssp CTTCCEEEEECSSS-------------CEEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEeCCCC-------------EEEEEECCCCCEEEEEcc
Confidence 3 578888764320 158999976554444433
No 50
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.25 E-value=0.37 Score=50.39 Aligned_cols=203 Identities=10% Similarity=0.023 Sum_probs=105.4
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCC-CCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~-~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~ 149 (643)
++++.| ++.+|+.++. -+.+++||+.+++........ .+.+......+.+ ++.+|+.|+..
T Consensus 127 ~~~~s~--~~~~~~~~~~---------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d----- 190 (433)
T 3bws_A 127 SVRFID--NTRLAIPLLE---------DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA----- 190 (433)
T ss_dssp CCEESS--SSEEEEEBTT---------SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----
T ss_pred EEEEeC--CCeEEEEeCC---------CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----
Confidence 455555 5778777762 136899999988776543211 0111112222333 67888887642
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
..+.+||+.+.+....-. .....-.+++.. ++.+|+.++. -..+++||+.+.+....-..
T Consensus 191 ------~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~ 252 (433)
T 3bws_A 191 ------NAVHVFDLKTLAYKATVD---LTGKWSKILLYDPIRDLVYCSNWI---------SEDISVIDRKTKLEIRKTDK 252 (433)
T ss_dssp ------TEEEEEETTTCCEEEEEE---CSSSSEEEEEEETTTTEEEEEETT---------TTEEEEEETTTTEEEEECCC
T ss_pred ------CEEEEEECCCceEEEEEc---CCCCCeeEEEEcCCCCEEEEEecC---------CCcEEEEECCCCcEEEEecC
Confidence 468899998765433221 111112233333 4567666543 24689999987765333221
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-
Q 006473 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~- 305 (643)
...-.+++.. ++..+++++..... .......+++||+.+.+-...... + ..-.++++.
T Consensus 253 -------~~~~~~~~~~~~g~~l~~~~~~~~~--------~~~~dg~i~~~d~~~~~~~~~~~~---~--~~~~~~~~~~ 312 (433)
T 3bws_A 253 -------IGLPRGLLLSKDGKELYIAQFSASN--------QESGGGRLGIYSMDKEKLIDTIGP---P--GNKRHIVSGN 312 (433)
T ss_dssp -------CSEEEEEEECTTSSEEEEEEEESCT--------TCSCCEEEEEEETTTTEEEEEEEE---E--ECEEEEEECS
T ss_pred -------CCCceEEEEcCCCCEEEEEECCCCc--------cccCCCeEEEEECCCCcEEeeccC---C--CCcceEEECC
Confidence 1112233333 44444444432210 000134688999887754443211 1 111223333
Q ss_pred -CCeEEEeccccccccCccccccccCCcEEEEECCCCcE
Q 006473 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (643)
+..+|+.++.. +.|.+||+.+.+-
T Consensus 313 ~g~~l~~~~~~~--------------~~v~v~d~~~~~~ 337 (433)
T 3bws_A 313 TENKIYVSDMCC--------------SKIEVYDLKEKKV 337 (433)
T ss_dssp STTEEEEEETTT--------------TEEEEEETTTTEE
T ss_pred CCCEEEEEecCC--------------CEEEEEECCCCcE
Confidence 33577765532 4589999987653
No 51
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.13 Score=52.46 Aligned_cols=201 Identities=11% Similarity=0.106 Sum_probs=102.8
Q ss_pred CEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--C--CEEEEEeCccCCCCCCcceecCe
Q 006473 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 82 ~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~--~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
+.+++.|+. + ..+.+||+.++.|..+.... ........+.+ . +.+++.|+.. ..
T Consensus 69 ~~~l~s~~~--d-------g~v~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~d-----------~~ 126 (379)
T 3jrp_A 69 GTILASCSY--D-------GKVLIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSD-----------GK 126 (379)
T ss_dssp CSEEEEEET--T-------SCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT-----------SE
T ss_pred CCEEEEecc--C-------CEEEEEEcCCCceeEeeeec--CCCcceEEEEeCCCCCCCEEEEecCC-----------Cc
Confidence 567777772 2 36888999999887654322 11122222333 2 5677777642 45
Q ss_pred EEEEECCCCcE-EEeccCCCCCCCceeEEEEE--------------CCEEEEEeeeecCCCceeeeccEEEEEcCCC--c
Q 006473 158 FWMLDLKTNQW-EQLNLKGCPSPRSGHRMVLY--------------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--K 220 (643)
Q Consensus 158 v~~yD~~t~~W-~~~~~~g~P~~Rs~h~~~~~--------------~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~--~ 220 (643)
+.+||+.+... ......+ ....-.+++.. ++.+++.|+.+ ..+.+||+.+. .
T Consensus 127 i~v~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~ 195 (379)
T 3jrp_A 127 VSVVEFKENGTTSPIIIDA--HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQT 195 (379)
T ss_dssp EEEEECCTTSCCCEEEEEC--CTTCEEEEEECCCC----------CTTCEEEEEETT---------SCEEEEEEETTTTE
T ss_pred EEEEecCCCCceeeEEecC--CCCceEEEEEcCccccccccccCCCCCCEEEEEeCC---------CeEEEEEecCCCcc
Confidence 77888876532 1111101 11111122222 35677777753 35777777554 3
Q ss_pred eEEeccCCCCCCCCCccceeEEEe-C---CEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeccCCCCC
Q 006473 221 WQEIKPRFGSMWPSPRSGFQFFVY-Q---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPP 294 (643)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~-~---~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P 294 (643)
|..+..... ....-.+++.. + +.+++.|+.++. +.+||+.+. .+...... ...
T Consensus 196 ~~~~~~~~~----h~~~v~~~~~sp~~~~~~~l~s~~~dg~----------------i~iwd~~~~~~~~~~~~~~-~~~ 254 (379)
T 3jrp_A 196 YVLESTLEG----HSDWVRDVAWSPTVLLRSYLASVSQDRT----------------CIIWTQDNEQGPWKKTLLK-EEK 254 (379)
T ss_dssp EEEEEEECC----CSSCEEEEEECCCCSSSEEEEEEETTSC----------------EEEEEESSTTSCCEEEESS-SSC
T ss_pred eeeEEEEec----ccCcEeEEEECCCCCCCCeEEEEeCCCE----------------EEEEeCCCCCccceeeeec-ccc
Confidence 554443311 11111223333 4 788888887765 666666554 22222111 111
Q ss_pred CCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECC-CCcEEEeEecC
Q 006473 295 GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD-NHRWYPLELRK 350 (643)
Q Consensus 295 ~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~-t~~W~~l~~~~ 350 (643)
....-.++++. ++.++++|+.. ..|.+|++. ...|..+....
T Consensus 255 ~~~~v~~~~~s~~g~~l~~~~~d--------------g~i~iw~~~~~~~~~~~~~~~ 298 (379)
T 3jrp_A 255 FPDVLWRASWSLSGNVLALSGGD--------------NKVTLWKENLEGKWEPAGEVH 298 (379)
T ss_dssp CSSCEEEEEECSSSCCEEEEESS--------------SSEEEEEEEETTEEEEEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEecCC--------------CcEEEEeCCCCCcccccccee
Confidence 12222333443 56777777653 348888877 56888877643
No 52
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=96.21 E-value=0.24 Score=53.56 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=41.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~ 213 (643)
++.+|+|-| +..|+||..++......-.++|. --++..+.+++|+|-| +..|+
T Consensus 158 ~~~~yfFkG-------------~~yw~yd~~~~~~~~~~w~gi~~---iDAA~~~~g~~YfFkG-----------~~y~r 210 (460)
T 1qhu_A 158 DEGILFFQG-------------NRKWFWDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQG-----------NQFLR 210 (460)
T ss_dssp SSEEEEEET-------------TEEEEEETTTTEEEEECCTTSCC---CSEEEEETTEEEEEET-----------TEEEE
T ss_pred CCeEEEEec-------------ccEEEEecccceeecccCCCCCc---cchheeeCCceEEEEC-----------CEEEE
Confidence 678999988 45799999988765433333342 3456667899999987 35677
Q ss_pred EEcCCC
Q 006473 214 FDLDQF 219 (643)
Q Consensus 214 yD~~t~ 219 (643)
||..+.
T Consensus 211 fd~~~~ 216 (460)
T 1qhu_A 211 FNPVSG 216 (460)
T ss_dssp ECTTTC
T ss_pred EcCccC
Confidence 876543
No 53
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.13 E-value=0.27 Score=56.75 Aligned_cols=186 Identities=9% Similarity=0.093 Sum_probs=105.9
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC-CC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~ 178 (643)
+-|++|++.+++++.+..... ....-.+++.. ++.|||-.. ..+++||+.+..|..+..... +.
T Consensus 427 ~Gl~~~~~~~~~~~~~~~~~~-~~~~v~~i~~d~~g~lwigt~-------------~Gl~~~~~~~~~~~~~~~~~~~~~ 492 (781)
T 3v9f_A 427 GNISYYNTRLKKFQIIELEKN-ELLDVRVFYEDKNKKIWIGTH-------------AGVFVIDLASKKVIHHYDTSNSQL 492 (781)
T ss_dssp EEEEEECSSSCEEEECCSTTT-CCCCEEEEEECTTSEEEEEET-------------TEEEEEESSSSSCCEEECTTTSSC
T ss_pred CCEEEEcCCCCcEEEeccCCC-CCCeEEEEEECCCCCEEEEEC-------------CceEEEeCCCCeEEecccCccccc
Confidence 358899999999988754211 11222333333 567777431 458899999998877653210 11
Q ss_pred -CCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCC
Q 006473 179 -PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYS 255 (643)
Q Consensus 179 -~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~ 255 (643)
...-.+++.. ++.||+- .. ...|++||+.+.++....... ..|.... .+++.. ++.|+|-.. .
T Consensus 493 ~~~~i~~i~~d~~g~lWig-t~---------~~Gl~~~~~~~~~~~~~~~~~--~l~~~~i-~~i~~d~~g~lWi~T~-~ 558 (781)
T 3v9f_A 493 LENFVRSIAQDSEGRFWIG-TF---------GGGVGIYTPDMQLVRKFNQYE--GFCSNTI-NQIYRSSKGQMWLATG-E 558 (781)
T ss_dssp SCSCEEEEEECTTCCEEEE-ES---------SSCEEEECTTCCEEEEECTTT--TCSCSCE-EEEEECTTSCEEEEET-T
T ss_pred ccceeEEEEEcCCCCEEEE-Ec---------CCCEEEEeCCCCeEEEccCCC--CCCCCee-EEEEECCCCCEEEEEC-C
Confidence 1111222222 5667763 21 135889999999888876431 1122211 222222 566776432 1
Q ss_pred CCCCCccCCCCCCceeeeE-EEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcE
Q 006473 256 KEVSTDKNQSEKGIIHSDL-WSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (643)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv-~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl 333 (643)
-+ ++||+.+.++.......-.|.... .+++.. ++.|++.+ . +-|
T Consensus 559 -----------------Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t-~---------------~Gl 604 (781)
T 3v9f_A 559 -----------------GLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWAST-N---------------TGI 604 (781)
T ss_dssp -----------------EEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEEC-S---------------SCE
T ss_pred -----------------CceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEc-C---------------Cce
Confidence 15 889998888877654322343332 344443 56776654 2 238
Q ss_pred EEEECCCCcEEEeEe
Q 006473 334 YGFQLDNHRWYPLEL 348 (643)
Q Consensus 334 ~~yd~~t~~W~~l~~ 348 (643)
.+||+.+.++..+..
T Consensus 605 ~~~~~~~~~~~~~~~ 619 (781)
T 3v9f_A 605 SCYITSKKCFYTYDH 619 (781)
T ss_dssp EEEETTTTEEEEECG
T ss_pred EEEECCCCceEEecc
Confidence 999999988877764
No 54
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.43 Score=50.75 Aligned_cols=160 Identities=13% Similarity=0.067 Sum_probs=75.7
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECC--CCcEEE-ecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKV-ISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~--~~~W~~-l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~ 148 (643)
++.+.|. +..|++.|+. -+.+.+|++. +..... +.... .+..-.+++.. ++..+++|+.
T Consensus 107 ~~~~s~d-~~~l~~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~----- 169 (450)
T 2vdu_B 107 NLRLTSD-ESRLIACADS---------DKSLLVFDVDKTSKNVLKLRKRFC--FSKRPNAISIAEDDTTVIIADK----- 169 (450)
T ss_dssp EEEECTT-SSEEEEEEGG---------GTEEEEEEECSSSSSCEEEEEEEE--CSSCEEEEEECTTSSEEEEEET-----
T ss_pred EEEEcCC-CCEEEEEECC---------CCeEEEEECcCCCCceeeeeeccc--CCCCceEEEEcCCCCEEEEEeC-----
Confidence 3444442 3445677773 2357788877 443332 21100 11111222222 4556666653
Q ss_pred CCcceecCeEEEEECCCCcEEEeccCCCC-CCCceeEEEE-EC---CEEEEEeeeecCCCceeeeccEEEEEcCCCceEE
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCP-SPRSGHRMVL-YK---HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P-~~Rs~h~~~~-~~---~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~ 223 (643)
...++.|++.+..........+. ....-.+++. -+ +.+++.|+.+ ..+.+||+.+.....
T Consensus 170 ------~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d---------~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 170 ------FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD---------EHIKISHYPQCFIVD 234 (450)
T ss_dssp ------TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT---------SCEEEEEESCTTCEE
T ss_pred ------CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC---------CcEEEEECCCCceee
Confidence 24578888876543210000010 0111112222 25 6777777742 468888887765433
Q ss_pred eccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeE
Q 006473 224 IKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (643)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (643)
...... ..+.. +++..++.+++.|+.++. +.+||+.+.+..
T Consensus 235 ~~~~~h---~~~v~--~~~~sd~~~l~s~~~d~~----------------v~vwd~~~~~~~ 275 (450)
T 2vdu_B 235 KWLFGH---KHFVS--SICCGKDYLLLSAGGDDK----------------IFAWDWKTGKNL 275 (450)
T ss_dssp EECCCC---SSCEE--EEEECSTTEEEEEESSSE----------------EEEEETTTCCEE
T ss_pred eeecCC---CCceE--EEEECCCCEEEEEeCCCe----------------EEEEECCCCcEe
Confidence 211100 11111 122226777777776544 778888776543
No 55
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.09 E-value=0.61 Score=53.08 Aligned_cols=120 Identities=15% Similarity=0.205 Sum_probs=68.9
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCC---CCC---ceeeEEEEECCEEEEEeCccCCCCCCcc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNS---PPP---RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~---P~p---Rs~ha~~~~~~~iyvfGG~~~~~~~~~~ 152 (643)
++.||+... .+.|+++|..+++ |+.-..... |.. ....+.++.++.||+...
T Consensus 77 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---------- 136 (677)
T 1kb0_A 77 DGIMYVSAS----------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---------- 136 (677)
T ss_dssp TTEEEEECG----------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT----------
T ss_pred CCEEEEECC----------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC----------
Confidence 788888765 2579999998874 886433210 000 112234556888888643
Q ss_pred eecCeEEEEECCCCc--EEEeccCCCC-CCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEecc
Q 006473 153 HHYKDFWMLDLKTNQ--WEQLNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKP 226 (643)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~g~P-~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~ 226 (643)
-..++.+|..|++ |+.-.....+ ......+.++.++.||+-.+.... .....|+.||..+.+ |+.-..
T Consensus 137 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~----~~~g~v~a~D~~tG~~~W~~~~~ 209 (677)
T 1kb0_A 137 --DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY----GVRGYITAYDAETGERKWRWFSV 209 (677)
T ss_dssp --TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEESS
T ss_pred --CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEeccccc----CCCCEEEEEECCCCcEEEEeccC
Confidence 1468999998774 8764320101 011122335568888775432111 124579999998765 876543
No 56
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.08 E-value=0.46 Score=54.89 Aligned_cols=186 Identities=8% Similarity=0.063 Sum_probs=102.8
Q ss_pred cEEEEECCCCcEEEecCCCCCCC-ceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPP-RSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~p-Rs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
-|++||+.++++..+.......+ ..-.+++.. ++.|||-.. +.+++||+.+++|+.+.....+..
T Consensus 428 Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------------~Gl~~~~~~~~~~~~~~~~~~~~~ 494 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------------SALVRFNPEQRSFTTIEKEKDGTP 494 (795)
T ss_dssp EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------------SCEEEEETTTTEEEECCBCTTCCB
T ss_pred ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------------CceeEEeCCCCeEEEccccccccc
Confidence 57899999998888754221111 112222222 467776532 358899999999988764211111
Q ss_pred C--ce-eEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC-CCCCCCccceeEEEe-CCEEEEEcC
Q 006473 180 R--SG-HRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG-SMWPSPRSGFQFFVY-QDEVFLYGG 253 (643)
Q Consensus 180 R--s~-h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~-~~~P~~R~~~s~~~~-~~~iyv~GG 253 (643)
. .. .+++.. ++.||+-.. ..|++||+.+.++ .+..... ...+. ..-.+++.. ++.|+|-..
T Consensus 495 ~~~~~i~~i~~d~~g~lWigt~-----------~Gl~~~~~~~~~~-~~~~~~~~~~l~~-~~i~~i~~d~~g~lWigT~ 561 (795)
T 4a2l_A 495 VVSKQITTLFRDSHKRLWIGGE-----------EGLSVFKQEGLDI-QKASILPVSNVTK-LFTNCIYEASNGIIWVGTR 561 (795)
T ss_dssp CCCCCEEEEEECTTCCEEEEES-----------SCEEEEEEETTEE-EECCCSCSCGGGG-SCEEEEEECTTSCEEEEES
T ss_pred cCCceEEEEEECCCCCEEEEeC-----------CceEEEeCCCCeE-EEecCCCCCCCCC-CeeEEEEECCCCCEEEEeC
Confidence 1 11 122222 567776321 3588999988887 4432100 00111 111222222 566776432
Q ss_pred CCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCc
Q 006473 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (643)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~nd 332 (643)
. . +++||+.+.++.........|.... .+++.- ++.|++.+. +-
T Consensus 562 -~-G----------------l~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lWi~t~----------------~G 606 (795)
T 4a2l_A 562 -E-G----------------FYCFNEKDKQIKRYNTTNGLPNNVV-YGILEDSFGRLWLSTN----------------RG 606 (795)
T ss_dssp -S-C----------------EEEEETTTTEEEEECGGGTCSCSCE-EEEEECTTSCEEEEET----------------TE
T ss_pred -C-C----------------ceeECCCCCcEEEeCCCCCCchhhe-EEEEECCCCCEEEEcC----------------Cc
Confidence 1 2 7899999998887754322343322 334333 467766552 23
Q ss_pred EEEEECCCCcEEEeEe
Q 006473 333 LYGFQLDNHRWYPLEL 348 (643)
Q Consensus 333 l~~yd~~t~~W~~l~~ 348 (643)
|.+||+.+.++..+..
T Consensus 607 l~~~~~~~~~~~~~~~ 622 (795)
T 4a2l_A 607 ISCFNPETEKFRNFTE 622 (795)
T ss_dssp EEEEETTTTEEEEECG
T ss_pred eEEEcCCCCcEEEcCC
Confidence 8899999988877654
No 57
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.07 E-value=0.54 Score=46.85 Aligned_cols=193 Identities=12% Similarity=0.091 Sum_probs=100.2
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
++.+.| ++.+++.|+. + ..+.+|+..+......-... ...-.+++.. ++.+++.|+..
T Consensus 28 ~~~~s~--~~~~l~s~~~--d-------g~i~iw~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~~~d------- 86 (312)
T 4ery_A 28 SVKFSP--NGEWLASSSA--D-------KLIKIWGAYDGKFEKTISGH---KLGISDVAWSSDSNLLVSASDD------- 86 (312)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTCCEEEEECCC---SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEECC--CCCEEEEeeC--C-------CeEEEEeCCCcccchhhccC---CCceEEEEEcCCCCEEEEECCC-------
Confidence 344444 5677777772 2 35778898887766543321 1111222222 45667777642
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (643)
..+.+||+.+..-...-. .... .-.++.+ ++.+++.|+.+ ..+.+||+.+.+-...-..
T Consensus 87 ----~~i~vwd~~~~~~~~~~~--~~~~--~v~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~-- 147 (312)
T 4ery_A 87 ----KTLKIWDVSSGKCLKTLK--GHSN--YVFCCNFNPQSNLIVSGSFD---------ESVRIWDVKTGKCLKTLPA-- 147 (312)
T ss_dssp ----SEEEEEETTTCCEEEEEE--CCSS--CEEEEEECSSSSEEEEEETT---------SCEEEEETTTCCEEEEECC--
T ss_pred ----CEEEEEECCCCcEEEEEc--CCCC--CEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCEEEEEecC--
Confidence 457888988775432211 1111 1112222 45566667643 3588899887653222111
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CC
Q 006473 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~ 307 (643)
. ..+ -.++... ++.+++.|+.++. +.+||+.+.+....-... .... -..+++. ++
T Consensus 148 ~--~~~--v~~~~~~~~~~~l~~~~~d~~----------------i~~wd~~~~~~~~~~~~~--~~~~-~~~~~~~~~~ 204 (312)
T 4ery_A 148 H--SDP--VSAVHFNRDGSLIVSSSYDGL----------------CRIWDTASGQCLKTLIDD--DNPP-VSFVKFSPNG 204 (312)
T ss_dssp C--SSC--EEEEEECTTSSEEEEEETTSC----------------EEEEETTTCCEEEEECCS--SCCC-EEEEEECTTS
T ss_pred C--CCc--EEEEEEcCCCCEEEEEeCCCc----------------EEEEECCCCceeeEEecc--CCCc-eEEEEECCCC
Confidence 0 111 1122222 5667788887665 778888776543322111 1111 1223333 56
Q ss_pred eEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
..++.|+.. +.|.+||+.+.+
T Consensus 205 ~~l~~~~~d--------------~~i~iwd~~~~~ 225 (312)
T 4ery_A 205 KYILAATLD--------------NTLKLWDYSKGK 225 (312)
T ss_dssp SEEEEEETT--------------TEEEEEETTTTE
T ss_pred CEEEEEcCC--------------CeEEEEECCCCc
Confidence 666666643 458999988764
No 58
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.06 E-value=0.41 Score=50.54 Aligned_cols=185 Identities=11% Similarity=0.131 Sum_probs=99.8
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
++.+++.|+. -+.+.+||..+.+-...-... .....++.+++.+++.|+.. ..+.+
T Consensus 142 d~~~l~~g~~---------dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~~~~~l~sg~~d-----------g~i~v 197 (435)
T 1p22_A 142 DDQKIVSGLR---------DNTIKIWDKNTLECKRILTGH----TGSVLCLQYDERVIITGSSD-----------STVRV 197 (435)
T ss_dssp CSSEEEEEES---------SSCEEEEESSSCCEEEEECCC----SSCEEEEECCSSEEEEEETT-----------SCEEE
T ss_pred CCCEEEEEeC---------CCeEEEEeCCCCeEEEEEcCC----CCcEEEEEECCCEEEEEcCC-----------CeEEE
Confidence 5777888873 247889999887654432221 11223334477777777753 35788
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEe-ccCCCCCCCCCccce
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI-KPRFGSMWPSPRSGF 239 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v-~~~~~~~~P~~R~~~ 239 (643)
||+.+.+....-. .....-.++.+.+.+++.|+.+ ..+.+||+.+..-... ... .......
T Consensus 198 wd~~~~~~~~~~~----~h~~~v~~l~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~-----~~~~~~v 259 (435)
T 1p22_A 198 WDVNTGEMLNTLI----HHCEAVLHLRFNNGMMVTCSKD---------RSIAVWDMASPTDITLRRVL-----VGHRAAV 259 (435)
T ss_dssp EESSSCCEEEEEC----CCCSCEEEEECCTTEEEEEETT---------SCEEEEECSSSSCCEEEEEE-----CCCSSCE
T ss_pred EECCCCcEEEEEc----CCCCcEEEEEEcCCEEEEeeCC---------CcEEEEeCCCCCCceeeeEe-----cCCCCcE
Confidence 8988876543221 1112223334455566667642 4578888876542211 111 1111112
Q ss_pred eEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccc
Q 006473 240 QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDME 319 (643)
Q Consensus 240 s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~ 319 (643)
..+..++..++.|+.++. +.+||+.+..-...-.. .. ....++..++.+++.|+..
T Consensus 260 ~~~~~~~~~l~s~~~dg~----------------i~vwd~~~~~~~~~~~~----~~-~~v~~~~~~~~~l~~g~~d--- 315 (435)
T 1p22_A 260 NVVDFDDKYIVSASGDRT----------------IKVWNTSTCEFVRTLNG----HK-RGIACLQYRDRLVVSGSSD--- 315 (435)
T ss_dssp EEEEEETTEEEEEETTSE----------------EEEEETTTCCEEEEEEC----CS-SCEEEEEEETTEEEEEETT---
T ss_pred EEEEeCCCEEEEEeCCCe----------------EEEEECCcCcEEEEEcC----CC-CcEEEEEeCCCEEEEEeCC---
Confidence 223335666777776554 77888876643332211 11 1223333456677777753
Q ss_pred cCccccccccCCcEEEEECCCCc
Q 006473 320 MKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 320 ~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
+.|.+||+.+..
T Consensus 316 -----------g~i~iwd~~~~~ 327 (435)
T 1p22_A 316 -----------NTIRLWDIECGA 327 (435)
T ss_dssp -----------SCEEEEETTTCC
T ss_pred -----------CeEEEEECCCCC
Confidence 358999998754
No 59
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.94 E-value=0.63 Score=51.84 Aligned_cols=120 Identities=11% Similarity=0.099 Sum_probs=67.2
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEEC-CCC--cEEEecCCCC---CCC---ceeeEEEEECCEEEEEeCccCCCCCCc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDV-EKQ--EWKVISSPNS---PPP---RSAHQAVSWKNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~-~~~--~W~~l~s~~~---P~p---Rs~ha~~~~~~~iyvfGG~~~~~~~~~ 151 (643)
++.||+.... .+.|+++|. .++ .|+.-..... +.+ ....+.++.++.||+...
T Consensus 62 ~g~vyv~~~~---------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--------- 123 (571)
T 2ad6_A 62 GDMMYVHSAF---------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA--------- 123 (571)
T ss_dssp TTEEEEECST---------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---------
T ss_pred CCEEEEEeCC---------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC---------
Confidence 7888887651 247999999 766 4886432210 000 011234556888888743
Q ss_pred ceecCeEEEEECCCC--cEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEec
Q 006473 152 FHHYKDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~--~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~ 225 (643)
-..++.+|..++ .|+.-............+.++.++.||+-.+.... ..-..|+.||+.+.+ |+.-.
T Consensus 124 ---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 124 ---NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAEL----GVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGG----TCCCEEEEEETTTCCEEEEEES
T ss_pred ---CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCcc----CCCCEEEEEECCCCcEEEEEcc
Confidence 146899999887 48754321000001112334568888765432110 013578999998754 87644
No 60
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.81 E-value=0.32 Score=50.82 Aligned_cols=182 Identities=15% Similarity=0.125 Sum_probs=89.0
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
+.+.+||+.+.+....-... .....++.+++.+++.|+.. ..+.+||+.+..-......+ . .
T Consensus 156 g~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~-~--~ 217 (401)
T 4aez_A 156 GLVDIYDVESQTKLRTMAGH----QARVGCLSWNRHVLSSGSRS-----------GAIHHHDVRIANHQIGTLQG-H--S 217 (401)
T ss_dssp SCEEEEETTTCCEEEEECCC----SSCEEEEEEETTEEEEEETT-----------SEEEEEETTSSSCEEEEEEC-C--S
T ss_pred CeEEEEECcCCeEEEEecCC----CCceEEEEECCCEEEEEcCC-----------CCEEEEecccCcceeeEEcC-C--C
Confidence 36788888877644332211 11222333355666676642 45788888743321111111 1 1
Q ss_pred ceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcC--CCC
Q 006473 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGG--YSK 256 (643)
Q Consensus 181 s~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG--~~~ 256 (643)
..-.++.+ ++.+++.|+.+ ..+.+||+.+..-...-.. . ..+....++...+..+++.|| .++
T Consensus 218 ~~v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~~~~~~~~~~-~---~~~v~~~~~~p~~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 218 SEVCGLAWRSDGLQLASGGND---------NVVQIWDARSSIPKFTKTN-H---NAAVKAVAWCPWQSNLLATGGGTMDK 284 (401)
T ss_dssp SCEEEEEECTTSSEEEEEETT---------SCEEEEETTCSSEEEEECC-C---SSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred CCeeEEEEcCCCCEEEEEeCC---------CeEEEccCCCCCccEEecC-C---cceEEEEEECCCCCCEEEEecCCCCC
Confidence 11122223 55677777742 4688899887543222111 0 112222222222556777775 333
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCe-EEEeccccccccCccccccccCCcEE
Q 006473 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELY 334 (643)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~-iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (643)
.+.+||+.+..-...-.. ...-.++++. ++. +++.+|..+ +.|.
T Consensus 285 ----------------~i~i~d~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~g~~d-------------g~i~ 330 (401)
T 4aez_A 285 ----------------QIHFWNAATGARVNTVDA-----GSQVTSLIWSPHSKEIMSTHGFPD-------------NNLS 330 (401)
T ss_dssp ----------------EEEEEETTTCCEEEEEEC-----SSCEEEEEECSSSSEEEEEECTTT-------------CEEE
T ss_pred ----------------EEEEEECCCCCEEEEEeC-----CCcEEEEEECCCCCeEEEEeecCC-------------CcEE
Confidence 378889877654433221 1112233333 344 444434332 4589
Q ss_pred EEECCCCcEEEeE
Q 006473 335 GFQLDNHRWYPLE 347 (643)
Q Consensus 335 ~yd~~t~~W~~l~ 347 (643)
+||+.+.....+.
T Consensus 331 v~~~~~~~~~~~~ 343 (401)
T 4aez_A 331 IWSYSSSGLTKQV 343 (401)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEecCCccceeEE
Confidence 9998887665544
No 61
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=95.71 E-value=0.55 Score=48.27 Aligned_cols=196 Identities=11% Similarity=0.022 Sum_probs=101.7
Q ss_pred eEEEEeccCCC-EEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEEC--CEEEEEeCccCCCC
Q 006473 72 CSLNINPLKET-ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSPN 148 (643)
Q Consensus 72 ~s~~~~~~~~~-~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~--~~iyvfGG~~~~~~ 148 (643)
.++...| ++ .+++.|+. -+.+.+||+.+.......... .....-.+++... +.+++.|+..
T Consensus 77 ~~~~~~~--~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d---- 140 (383)
T 3ei3_B 77 TSLEWHP--THPTTVAVGSK---------GGDIILWDYDVQNKTSFIQGM-GPGDAITGMKFNQFNTNQLFVSSIR---- 140 (383)
T ss_dssp EEEEECS--SCTTEEEEEEB---------TSCEEEEETTSTTCEEEECCC-STTCBEEEEEEETTEEEEEEEEETT----
T ss_pred EEEEECC--CCCCEEEEEcC---------CCeEEEEeCCCcccceeeecC-CcCCceeEEEeCCCCCCEEEEEeCC----
Confidence 3444554 44 68888873 246889999988776553321 1112222333333 3666666542
Q ss_pred CCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
..+.+||+.+.....+.... .....-.+++.. ++.+++.|+. -..+.+||+....-..+...
T Consensus 141 -------~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~h 203 (383)
T 3ei3_B 141 -------GATTLRDFSGSVIQVFAKTD-SWDYWYCCVDVSVSRQMLATGDS---------TGRLLLLGLDGHEIFKEKLH 203 (383)
T ss_dssp -------TEEEEEETTSCEEEEEECCC-CSSCCEEEEEEETTTTEEEEEET---------TSEEEEEETTSCEEEEEECS
T ss_pred -------CEEEEEECCCCceEEEeccC-CCCCCeEEEEECCCCCEEEEECC---------CCCEEEEECCCCEEEEeccC
Confidence 45788899877766654311 111111222222 4566666664 24688888854433333221
Q ss_pred CCCCCCCCccceeEEEe-CCE-EEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC----CeeEEeccCCCCCCCceeeE
Q 006473 228 FGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT----WEWSKVKKIGMPPGPRAGFS 301 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~-iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t----~~W~~l~~~g~~P~~R~g~s 301 (643)
.. .-.+++.. ++. +++.|+.++. +.+||+.+ ........ ....-.+
T Consensus 204 -----~~--~v~~~~~~~~~~~~l~s~~~d~~----------------i~iwd~~~~~~~~~~~~~~~-----~~~~v~~ 255 (383)
T 3ei3_B 204 -----KA--KVTHAEFNPRCDWLMATSSVDAT----------------VKLWDLRNIKDKNSYIAEMP-----HEKPVNA 255 (383)
T ss_dssp -----SS--CEEEEEECSSCTTEEEEEETTSE----------------EEEEEGGGCCSTTCEEEEEE-----CSSCEEE
T ss_pred -----CC--cEEEEEECCCCCCEEEEEeCCCE----------------EEEEeCCCCCcccceEEEec-----CCCceEE
Confidence 11 11222333 333 7778877654 77888765 22222211 1112223
Q ss_pred EEEE--CCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 302 MCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 302 ~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
+++. ++.+++.|+.. +.|.+||+.+..
T Consensus 256 ~~~s~~~~~~l~~~~~d--------------~~i~iwd~~~~~ 284 (383)
T 3ei3_B 256 AYFNPTDSTKLLTTDQR--------------NEIRVYSSYDWS 284 (383)
T ss_dssp EEECTTTSCEEEEEESS--------------SEEEEEETTBTT
T ss_pred EEEcCCCCCEEEEEcCC--------------CcEEEEECCCCc
Confidence 3333 46677777643 458999987653
No 62
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=95.69 E-value=0.75 Score=44.53 Aligned_cols=194 Identities=10% Similarity=0.056 Sum_probs=99.5
Q ss_pred CceEEEEeccCCCEEEE-EcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCC
Q 006473 70 SNCSLNINPLKETELIL-YGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyv-fGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~ 147 (643)
..+++++.+ ++.||+ ... ..+.|++|++.+.....+..... ..-++++.. ++.|||... .
T Consensus 25 ~p~~i~~~~--~g~l~v~~~~---------~~~~i~~~~~~~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~-~--- 86 (270)
T 1rwi_B 25 SPSGVAVDS--AGNVYVTSEG---------MYGRVVKLATGSTGTTVLPFNGL---YQPQGLAVDGAGTVYVTDF-N--- 86 (270)
T ss_dssp CEEEEEECT--TCCEEEEECS---------SSCEEEEECC-----EECCCCSC---CSCCCEEECTTCCEEEEET-T---
T ss_pred CccceEECC--CCCEEEEccC---------CCCcEEEecCCCcccceEeeCCc---CCcceeEECCCCCEEEEcC-C---
Confidence 445566655 567888 433 12468889887766554432211 122334443 567888764 1
Q ss_pred CCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEecc
Q 006473 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (643)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (643)
..+++||+.+.....+...+ ...-+.+++. +++||+.... ...+++|+..+........
T Consensus 87 --------~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~~~~~~~~~~ 146 (270)
T 1rwi_B 87 --------NRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQGAVYVADRG---------NNRVVKLAAGSKTQTVLPF 146 (270)
T ss_dssp --------TEEEEECTTCSCCEECCCCS---CSSEEEEEECTTCCEEEEEGG---------GTEEEEECTTCCSCEECCC
T ss_pred --------CEEEEEeCCCceEeeeecCC---cCCCcceEECCCCCEEEEECC---------CCEEEEEECCCceeEeecc
Confidence 35889998877655443211 1222344443 5678876432 2468888776655443221
Q ss_pred CCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE
Q 006473 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (643)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~ 305 (643)
. . ...+ .+++.. ++.||+...... .+++|++.+..-......+ ...-.++++.
T Consensus 147 ~--~-~~~p---~~i~~~~~g~l~v~~~~~~----------------~i~~~~~~~~~~~~~~~~~----~~~p~~i~~d 200 (270)
T 1rwi_B 147 T--G-LNDP---DGVAVDNSGNVYVTDTDNN----------------RVVKLEAESNNQVVLPFTD----ITAPWGIAVD 200 (270)
T ss_dssp C--S-CCSC---CCEEECTTCCEEEEEGGGT----------------EEEEECTTTCCEEECCCSS----CCSEEEEEEC
T ss_pred c--c-CCCc---eeEEEeCCCCEEEEECCCC----------------EEEEEecCCCceEeecccC----CCCceEEEEC
Confidence 1 0 0111 233443 567887654332 3788888766543332111 1222344444
Q ss_pred -CCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
++.||+.... .+.|++|++.+.
T Consensus 201 ~~g~l~v~~~~--------------~~~v~~~~~~~~ 223 (270)
T 1rwi_B 201 EAGTVYVTEHN--------------TNQVVKLLAGST 223 (270)
T ss_dssp TTCCEEEEETT--------------TSCEEEECTTCS
T ss_pred CCCCEEEEECC--------------CCcEEEEcCCCC
Confidence 4577776532 245889988664
No 63
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=95.69 E-value=0.39 Score=46.48 Aligned_cols=187 Identities=8% Similarity=0.029 Sum_probs=99.1
Q ss_pred eccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCC-CcEEEeccCCCC
Q 006473 100 YGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT-NQWEQLNLKGCP 177 (643)
Q Consensus 100 ~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t-~~W~~~~~~g~P 177 (643)
-..+++||+.+++...+... ...-.+++.. ++..+++++. ..++++|+.+ .....+.. .+
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~------------~~i~~~d~~~~~~~~~~~~--~~ 82 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQT----PELFEAPNWSPDGKYLLLNSE------------GLLYRLSLAGDPSPEKVDT--GF 82 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEE----SSCCEEEEECTTSSEEEEEET------------TEEEEEESSSCCSCEECCC--TT
T ss_pred ceeEEEEeCCCCceeeeccC----CcceEeeEECCCCCEEEEEcC------------CeEEEEeCCCCCCceEecc--cc
Confidence 46899999999887766432 1112222222 4555566531 4689999998 77766543 12
Q ss_pred CCCceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCC
Q 006473 178 SPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGY 254 (643)
Q Consensus 178 ~~Rs~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~ 254 (643)
....-..++. -++..+++++.... ....||.+++.+.....+... . . ...+... +..|++.++.
T Consensus 83 ~~~~~~~~~~spdg~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~-----~-~--~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 83 ATICNNDHGISPDGALYAISDKVEF-----GKSAIYLLPSTGGTPRLMTKN-----L-P--SYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp CCCBCSCCEECTTSSEEEEEECTTT-----SSCEEEEEETTCCCCEECCSS-----S-S--EEEEEECTTSSEEEEEEEE
T ss_pred ccccccceEECCCCCEEEEEEeCCC-----CcceEEEEECCCCceEEeecC-----C-C--ccceEECCCCCEEEEEECC
Confidence 1111112222 25555555553221 146799999887765554433 1 1 2222222 3445545543
Q ss_pred CCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcE
Q 006473 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (643)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl 333 (643)
.+. ..+|.+++.+.....+... ...-.++++. +++.+++++..+ -...|
T Consensus 150 ~~~--------------~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~-----------~~~~i 199 (297)
T 2ojh_A 150 DQV--------------FDIYSMDIDSGVETRLTHG-----EGRNDGPDYSPDGRWIYFNSSRT-----------GQMQI 199 (297)
T ss_dssp TTE--------------EEEEEEETTTCCEEECCCS-----SSCEEEEEECTTSSEEEEEECTT-----------SSCEE
T ss_pred CCc--------------eEEEEEECCCCcceEcccC-----CCccccceECCCCCEEEEEecCC-----------CCccE
Confidence 321 3688888877776655432 1112233333 555555544321 13568
Q ss_pred EEEECCCCcEEEeE
Q 006473 334 YGFQLDNHRWYPLE 347 (643)
Q Consensus 334 ~~yd~~t~~W~~l~ 347 (643)
|.+++.+.....+.
T Consensus 200 ~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 200 WRVRVDGSSVERIT 213 (297)
T ss_dssp EEEETTSSCEEECC
T ss_pred EEECCCCCCcEEEe
Confidence 88887776665544
No 64
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.69 E-value=0.7 Score=46.10 Aligned_cols=100 Identities=7% Similarity=0.053 Sum_probs=47.5
Q ss_pred ccEEEEECC--CCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCC-cEEEeccCC
Q 006473 101 GDLYRYDVE--KQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKG 175 (643)
Q Consensus 101 ndv~~yd~~--~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~-~W~~~~~~g 175 (643)
+.+.+|++. +++++.+.....+. .-..++.. +..||+.+.. -..+.+||+... ....+..
T Consensus 60 ~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~-----------~~~i~~~d~~~~~~~~~~~~-- 124 (343)
T 1ri6_A 60 FRVLAYRIAPDDGALTFAAESALPG--SLTHISTDHQGQFVFVGSYN-----------AGNVSVTRLEDGLPVGVVDV-- 124 (343)
T ss_dssp TEEEEEEECTTTCCEEEEEEEECSS--CCSEEEECTTSSEEEEEETT-----------TTEEEEEEEETTEEEEEEEE--
T ss_pred CeEEEEEecCCCCceeeccccccCC--CCcEEEEcCCCCEEEEEecC-----------CCeEEEEECCCCcccccccc--
Confidence 356777776 77777554321111 12223332 3456666532 134667776322 2222222
Q ss_pred CCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCC-CceEEe
Q 006473 176 CPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEI 224 (643)
Q Consensus 176 ~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t-~~W~~v 224 (643)
.+....-+.+++. ++.||+.+.. ...+++||+.+ .+...+
T Consensus 125 ~~~~~~~~~~~~s~dg~~l~~~~~~---------~~~v~~~d~~~~~~~~~~ 167 (343)
T 1ri6_A 125 VEGLDGCHSANISPDNRTLWVPALK---------QDRICLFTVSDDGHLVAQ 167 (343)
T ss_dssp ECCCTTBCCCEECTTSSEEEEEEGG---------GTEEEEEEECTTSCEEEE
T ss_pred ccCCCCceEEEECCCCCEEEEecCC---------CCEEEEEEecCCCceeee
Confidence 1111122333333 3467665422 24688999887 666543
No 65
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=95.68 E-value=0.38 Score=47.83 Aligned_cols=194 Identities=14% Similarity=0.095 Sum_probs=98.7
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcE----EEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW----KVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W----~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~ 147 (643)
++...| ++.+++.|+ + +.+..|++.+... ..+.... ....-.+++.. ++.++++|+..
T Consensus 56 ~~~~~~--~~~~l~~~~---d-------g~i~iw~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d--- 118 (337)
T 1gxr_A 56 AVTISN--PTRHVYTGG---K-------GCVKVWDISHPGNKSPVSQLDCLN--RDNYIRSCKLLPDGCTLIVGGEA--- 118 (337)
T ss_dssp EEEECS--SSSEEEEEC---B-------SEEEEEETTSTTCCSCSEEEECSC--TTSBEEEEEECTTSSEEEEEESS---
T ss_pred EEEEec--CCcEEEEcC---C-------CeEEEEECCCCCceeeeecccccC--CCCcEEEEEEcCCCCEEEEEcCC---
Confidence 344454 567777766 1 3678888876542 1111101 11112222222 45566666532
Q ss_pred CCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
..+.+||+.+........ .........++.+ ++.+++.|+.+ ..+.+||+.+.+....-
T Consensus 119 --------~~i~~~d~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 119 --------STLSIWDLAAPTPRIKAE--LTSSAPACYALAISPDSKVCFSCCSD---------GNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp --------SEEEEEECCCC--EEEEE--EECSSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEE
T ss_pred --------CcEEEEECCCCCcceeee--cccCCCceEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCceeeee
Confidence 468889998877544332 1111111222233 45566666642 45888998876543322
Q ss_pred cCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE
Q 006473 226 PRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (643)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~ 304 (643)
.. ....-.++... ++.+++.|+.++. +.+||+.+.+-...... ...-.++++
T Consensus 180 ~~------~~~~i~~~~~~~~~~~l~~~~~dg~----------------i~~~d~~~~~~~~~~~~-----~~~v~~~~~ 232 (337)
T 1gxr_A 180 QG------HTDGASCIDISNDGTKLWTGGLDNT----------------VRSWDLREGRQLQQHDF-----TSQIFSLGY 232 (337)
T ss_dssp CC------CSSCEEEEEECTTSSEEEEEETTSE----------------EEEEETTTTEEEEEEEC-----SSCEEEEEE
T ss_pred ec------ccCceEEEEECCCCCEEEEEecCCc----------------EEEEECCCCceEeeecC-----CCceEEEEE
Confidence 11 11111223333 5667777776544 78889877654333221 111233444
Q ss_pred E-CCeEEEeccccccccCccccccccCCcEEEEECCCCcE
Q 006473 305 H-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 305 ~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (643)
. ++.++++|+.. +.|.+||+.+..-
T Consensus 233 s~~~~~l~~~~~~--------------~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 233 CPTGEWLAVGMES--------------SNVEVLHVNKPDK 258 (337)
T ss_dssp CTTSSEEEEEETT--------------SCEEEEETTSSCE
T ss_pred CCCCCEEEEEcCC--------------CcEEEEECCCCCe
Confidence 3 56777777643 3589999987653
No 66
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=95.63 E-value=0.63 Score=47.16 Aligned_cols=206 Identities=9% Similarity=-0.028 Sum_probs=97.4
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
++...| ++.+++.|+. + +.+.+||+.+.++....... .....-.+++.. ++.+++.|+..
T Consensus 57 ~~~~~~--~~~~l~~~~~--d-------g~i~vwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------- 117 (372)
T 1k8k_C 57 GVDWAP--DSNRIVTCGT--D-------RNAYVWTLKGRTWKPTLVIL-RINRAARCVRWAPNEKKFAVGSGS------- 117 (372)
T ss_dssp EEEEET--TTTEEEEEET--T-------SCEEEEEEETTEEEEEEECC-CCSSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEEeC--CCCEEEEEcC--C-------CeEEEEECCCCeeeeeEEee-cCCCceeEEEECCCCCEEEEEeCC-------
Confidence 344455 5667777772 2 36888899888876543211 111122222222 45566666642
Q ss_pred ceecCeEEEEECCCCc-EEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCC----------
Q 006473 152 FHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF---------- 219 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~---------- 219 (643)
..+.+||+.+.. |........+....-.+++.. ++.+++.|+.+ ..+.+||+...
T Consensus 118 ----~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~ 184 (372)
T 1k8k_C 118 ----RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD---------FKCRIFSAYIKEVEERPAPTP 184 (372)
T ss_dssp ----SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT---------SCEEEEECCCTTTSCCCCCBT
T ss_pred ----CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC---------CCEEEEEcccccccccccccc
Confidence 234445444432 322222101111112222222 55666777642 35778885421
Q ss_pred ------ceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCC
Q 006473 220 ------KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (643)
Q Consensus 220 ------~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 292 (643)
.-..+.... .....-.+++.. ++.+++.|+.++. +.+||+.+.+-...-..
T Consensus 185 ~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~~-- 242 (372)
T 1k8k_C 185 WGSKMPFGELMFESS----SSCGWVHGVCFSANGSRVAWVSHDST----------------VCLADADKKMAVATLAS-- 242 (372)
T ss_dssp TBSCCCTTCEEEECC----CCSSCEEEEEECSSSSEEEEEETTTE----------------EEEEEGGGTTEEEEEEC--
T ss_pred cccccchhhheEecC----CCCCeEEEEEECCCCCEEEEEeCCCE----------------EEEEECCCCceeEEEcc--
Confidence 111121110 011111122222 5556777766543 77888765543322211
Q ss_pred CCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCC--CcEEEeEec
Q 006473 293 PPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN--HRWYPLELR 349 (643)
Q Consensus 293 ~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t--~~W~~l~~~ 349 (643)
+ ...-.++++. ++.+++.| .. +.+.+|++.+ +.|..+...
T Consensus 243 -~-~~~v~~~~~~~~~~~l~~~-~d--------------~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 243 -E-TLPLLAVTFITESSLVAAG-HD--------------CFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp -S-SCCEEEEEEEETTEEEEEE-TT--------------SSCEEEEEETTTTEEEECCCC
T ss_pred -C-CCCeEEEEEecCCCEEEEE-eC--------------CeEEEEEccCcCceEEEeecc
Confidence 1 1112234443 56655555 32 3478888887 899887653
No 67
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=95.60 E-value=2.1 Score=42.68 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=41.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.+|+.++. .+.|+++|+.+++....... +.....+.++.. +..+|+.+.. ...+
T Consensus 10 ~~~~~v~~~~---------~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~~~v~~~~-----------~~~i 67 (349)
T 1jmx_B 10 GHEYMIVTNY---------PNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNH-----------YGDI 67 (349)
T ss_dssp TCEEEEEEET---------TTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEETT-----------TTEE
T ss_pred CCEEEEEeCC---------CCeEEEEECCCCcEEEEEec--CCCCCCceeEECCCCCEEEEEeCC-----------CCcE
Confidence 5778887772 25789999998876533221 110012233333 3468877642 2569
Q ss_pred EEEECCCCcEEE
Q 006473 159 WMLDLKTNQWEQ 170 (643)
Q Consensus 159 ~~yD~~t~~W~~ 170 (643)
++||+.+++...
T Consensus 68 ~~~d~~t~~~~~ 79 (349)
T 1jmx_B 68 YGIDLDTCKNTF 79 (349)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEeCCCCcEEE
Confidence 999999887553
No 68
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=95.58 E-value=0.53 Score=47.42 Aligned_cols=128 Identities=12% Similarity=0.023 Sum_probs=69.7
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~ 150 (643)
.++++.+ ++.||+.+.. .+.|++||+.++++..+... ....-++++.. ++.||+.+.....
T Consensus 48 ~~~~~~~--~g~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~---~~~~~~~i~~~~dg~l~v~~~~~~~---- 109 (333)
T 2dg1_A 48 EGLNFDR--QGQLFLLDVF---------EGNIFKINPETKEIKRPFVS---HKANPAAIKIHKDGRLFVCYLGDFK---- 109 (333)
T ss_dssp EEEEECT--TSCEEEEETT---------TCEEEEECTTTCCEEEEEEC---SSSSEEEEEECTTSCEEEEECTTSS----
T ss_pred cCcEECC--CCCEEEEECC---------CCEEEEEeCCCCcEEEEeeC---CCCCcceEEECCCCcEEEEeCCCCC----
Confidence 4455554 6778877652 24789999999988776421 11223334333 5678887543211
Q ss_pred cceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEe
Q 006473 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (643)
....+++||+.+.....+... ......-..+++. ++.||+....... ......||+||+.+.+...+
T Consensus 110 ---~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~---~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 110 ---STGGIFAATENGDNLQDIIED-LSTAYCIDDMVFDSKGGFYFTDFRGYS---TNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp ---SCCEEEEECTTSCSCEEEECS-SSSCCCEEEEEECTTSCEEEEECCCBT---TBCCEEEEEECTTSCCEEEE
T ss_pred ---CCceEEEEeCCCCEEEEEEcc-CccCCcccceEECCCCCEEEEeccccc---cCCCceEEEEeCCCCEEEEe
Confidence 124689999988876533221 1111122222332 5677774321100 01135789999887666554
No 69
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.56 E-value=0.027 Score=58.17 Aligned_cols=141 Identities=11% Similarity=0.165 Sum_probs=66.4
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.+++.|+. + +.+.+|++.++.|..+.... ........+.+ ++.+++.|+.. ..+
T Consensus 22 ~g~~l~~~~~--d-------~~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~d-----------~~v 79 (377)
T 3dwl_C 22 QRTEFVTTTA--T-------NQVELYEQDGNGWKHARTFS--DHDKIVTCVDWAPKSNRIVTCSQD-----------RNA 79 (377)
T ss_dssp SSSEEECCCS--S-------SCBCEEEEETTEEEECCCBC--CCSSCEEEEEECTTTCCEEEEETT-----------SSE
T ss_pred CCCEEEEecC--C-------CEEEEEEccCCceEEEEEEe--cCCceEEEEEEeCCCCEEEEEeCC-----------CeE
Confidence 5678888873 2 35778888888888765432 11122222333 45667777642 347
Q ss_pred EEEECCCCc-EEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc-eEEeccCCCCCCCC
Q 006473 159 WMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIKPRFGSMWPS 234 (643)
Q Consensus 159 ~~yD~~t~~-W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~-W~~v~~~~~~~~P~ 234 (643)
.+||+.+.. |..+.. .........++.+ ++.+++.|+.+ ..+.+||+.+.. |..+..... +.
T Consensus 80 ~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~---~h 145 (377)
T 3dwl_C 80 YVYEKRPDGTWKQTLV--LLRLNRAATFVRWSPNEDKFAVGSGA---------RVISVCYFEQENDWWVSKHLKR---PL 145 (377)
T ss_dssp EEC------CCCCEEE--CCCCSSCEEEEECCTTSSCCEEEESS---------SCEEECCC-----CCCCEEECS---SC
T ss_pred EEEEcCCCCceeeeeE--ecccCCceEEEEECCCCCEEEEEecC---------CeEEEEEECCcccceeeeEeec---cc
Confidence 788887766 443322 1111112222333 45666677643 346777776654 322222210 11
Q ss_pred CccceeEEEe-CCEEEEEcCCCCC
Q 006473 235 PRSGFQFFVY-QDEVFLYGGYSKE 257 (643)
Q Consensus 235 ~R~~~s~~~~-~~~iyv~GG~~~~ 257 (643)
...-.+++.. ++.+++.|+.++.
T Consensus 146 ~~~v~~~~~~~~~~~l~~~~~d~~ 169 (377)
T 3dwl_C 146 RSTILSLDWHPNNVLLAAGCADRK 169 (377)
T ss_dssp CSCEEEEEECTTSSEEEEEESSSC
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCE
Confidence 2222233333 5667788877654
No 70
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=95.55 E-value=0.74 Score=51.91 Aligned_cols=195 Identities=8% Similarity=0.025 Sum_probs=99.9
Q ss_pred eccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCC-cEEEeccCCC
Q 006473 100 YGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKGC 176 (643)
Q Consensus 100 ~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~-~W~~~~~~g~ 176 (643)
...+++||+.+.+...+.... ........+.+ +++.++++...... ....++++|+.+. .+..+.....
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~------~~~~v~~~d~~~g~~~~~~~~~~~ 305 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGE--PKEKFLTNLSWSPDENILYVAEVNRAQ------NECKVNAYDAETGRFVRTLFVETD 305 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCS--CTTCEEEEEEECTTSSEEEEEEECTTS------CEEEEEEEETTTCCEEEEEEEEEC
T ss_pred eeEEEEEECCCCceEeeccCC--CCceeEeeEEEECCCCEEEEEEeCCCC------CeeEEEEEECCCCceeeEEEEccC
Confidence 357999999998877665321 11122223333 44433443322111 1357999999998 7766543111
Q ss_pred CCCCc-eeEEEE-E--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccc-eeEEEeCCEEEEE
Q 006473 177 PSPRS-GHRMVL-Y--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG-FQFFVYQDEVFLY 251 (643)
Q Consensus 177 P~~Rs-~h~~~~-~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~-~s~~~~~~~iyv~ 251 (643)
+.... ...++. - ++++++.+...+ ...||.++........+... ...... .++...+..||+.
T Consensus 306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g-------~~~l~~~~~~~~~~~~l~~~-----~~~v~~~~~~spdg~~l~~~ 373 (706)
T 2z3z_A 306 KHYVEPLHPLTFLPGSNNQFIWQSRRDG-------WNHLYLYDTTGRLIRQVTKG-----EWEVTNFAGFDPKGTRLYFE 373 (706)
T ss_dssp SSCCCCCSCCEECTTCSSEEEEEECTTS-------SCEEEEEETTSCEEEECCCS-----SSCEEEEEEECTTSSEEEEE
T ss_pred CCeECccCCceeecCCCCEEEEEEccCC-------ccEEEEEECCCCEEEecCCC-----CeEEEeeeEEcCCCCEEEEE
Confidence 11000 011222 2 567555543321 35788888766666655432 122221 1111124456666
Q ss_pred cCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccC
Q 006473 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFL 330 (643)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ 330 (643)
+.... .....+|.+|+.+.....+... . ..+++++- +++.+++..... ...
T Consensus 374 ~~~~~------------~~~~~l~~~d~~~~~~~~l~~~-----~-~~~~~~~spdg~~l~~~~~~~----------~~p 425 (706)
T 2z3z_A 374 STEAS------------PLERHFYCIDIKGGKTKDLTPE-----S-GMHRTQLSPDGSAIIDIFQSP----------TVP 425 (706)
T ss_dssp ESSSC------------TTCBEEEEEETTCCCCEESCCS-----S-SEEEEEECTTSSEEEEEEECS----------SCS
T ss_pred ecCCC------------CceEEEEEEEcCCCCceeccCC-----C-ceEEEEECCCCCEEEEEecCC----------CCC
Confidence 54432 1124589999888776665421 1 12333333 566666664322 124
Q ss_pred CcEEEEECCCCc
Q 006473 331 NELYGFQLDNHR 342 (643)
Q Consensus 331 ndl~~yd~~t~~ 342 (643)
..++++|+.+.+
T Consensus 426 ~~i~l~d~~~~~ 437 (706)
T 2z3z_A 426 RKVTVTNIGKGS 437 (706)
T ss_dssp CEEEEEESSSCE
T ss_pred cEEEEEECCCCe
Confidence 569999998877
No 71
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.51 E-value=0.78 Score=48.49 Aligned_cols=186 Identities=9% Similarity=0.028 Sum_probs=98.7
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
..|+++|+....-+.+.... . ....+.+ ++..+++++.... ...++++|+.+++...+.. .+.
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~--~---~v~~~~~Spdg~~la~~s~~~~--------~~~i~~~d~~tg~~~~l~~--~~~ 223 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP--Q---PLMSPAWSPDGSKLAYVTFESG--------RSALVIQTLANGAVRQVAS--FPR 223 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES--S---CEEEEEECTTSSEEEEEECTTS--------SCEEEEEETTTCCEEEEEC--CSS
T ss_pred ceEEEEcCCCCCCEEEeCCC--C---cceeeEEcCCCCEEEEEEecCC--------CcEEEEEECCCCcEEEeec--CCC
Confidence 57888898766555553211 1 1122223 4555555553221 2579999999988776643 121
Q ss_pred CCceeEEEEE--CC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCC
Q 006473 179 PRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGY 254 (643)
Q Consensus 179 ~Rs~h~~~~~--~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~ 254 (643)
...++.+ ++ +|++.+...+ ...||+||+.+.+...+... +.. ..++... ++..+++++.
T Consensus 224 ---~~~~~~~spdg~~la~~~~~~g-------~~~i~~~d~~~~~~~~l~~~-----~~~--~~~~~~spdg~~l~~~s~ 286 (415)
T 2hqs_A 224 ---HNGAPAFSPDGSKLAFALSKTG-------SLNLYVMDLASGQIRQVTDG-----RSN--NTEPTWFPDSQNLAFTSD 286 (415)
T ss_dssp ---CEEEEEECTTSSEEEEEECTTS-------SCEEEEEETTTCCEEECCCC-----SSC--EEEEEECTTSSEEEEEEC
T ss_pred ---cccCEEEcCCCCEEEEEEecCC-------CceEEEEECCCCCEEeCcCC-----CCc--ccceEECCCCCEEEEEEC
Confidence 1223333 44 4554443221 35699999998876655433 111 1122222 4444444432
Q ss_pred CCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcE
Q 006473 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (643)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl 333 (643)
... ...+|.+|+.+..-..+... .....++++. +++.+++++..+ -...|
T Consensus 287 ~~g-------------~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~spdG~~l~~~~~~~-----------g~~~i 337 (415)
T 2hqs_A 287 QAG-------------RPQVYKVNINGGAPQRITWE-----GSQNQDADVSSDGKFMVMVSSNG-----------GQQHI 337 (415)
T ss_dssp TTS-------------SCEEEEEETTSSCCEECCCS-----SSEEEEEEECTTSSEEEEEEECS-----------SCEEE
T ss_pred CCC-------------CcEEEEEECCCCCEEEEecC-----CCcccCeEECCCCCEEEEEECcC-----------CceEE
Confidence 111 13589999988765544321 2222233333 566666665432 02469
Q ss_pred EEEECCCCcEEEeE
Q 006473 334 YGFQLDNHRWYPLE 347 (643)
Q Consensus 334 ~~yd~~t~~W~~l~ 347 (643)
++||+.+.....+.
T Consensus 338 ~~~d~~~~~~~~l~ 351 (415)
T 2hqs_A 338 AKQDLATGGVQVLS 351 (415)
T ss_dssp EEEETTTCCEEECC
T ss_pred EEEECCCCCEEEec
Confidence 99999998876544
No 72
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.39 E-value=0.098 Score=55.62 Aligned_cols=115 Identities=11% Similarity=0.082 Sum_probs=60.5
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~ 150 (643)
++...|. ++.+++.|+. + +.|.+||+.+.....+.... .....-.+++.. ++.+++.|+..
T Consensus 124 ~l~~~P~-~~~~lasGs~--d-------g~i~lWd~~~~~~~~~~~~~-gH~~~V~~l~f~p~~~~~l~s~s~D------ 186 (435)
T 4e54_B 124 SLAWHPT-HPSTVAVGSK--G-------GDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSME------ 186 (435)
T ss_dssp EEEECSS-CTTCEEEEET--T-------SCEEEECSSCCSCCEEECCC-SSSCCCCEEEECSSCTTEEEEECSS------
T ss_pred EEEEeCC-CCCEEEEEeC--C-------CEEEEEECCCCCceeEEEcc-CCCCCEEEEEEeCCCCCEEEEEeCC------
Confidence 4555554 3568888883 2 36888888776544332211 011111223322 45566777653
Q ss_pred cceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
..+.++|+.++....+.... .......++... ++.+++.|+.+ ..|.+||+...
T Consensus 187 -----~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~d---------g~i~~wd~~~~ 241 (435)
T 4e54_B 187 -----GTTRLQDFKGNILRVFASSD-TINIWFCSLDVSASSRMVVTGDNV---------GNVILLNMDGK 241 (435)
T ss_dssp -----SCEEEEETTSCEEEEEECCS-SCSCCCCCEEEETTTTEEEEECSS---------SBEEEEESSSC
T ss_pred -----CEEEEeeccCCceeEEeccC-CCCccEEEEEECCCCCEEEEEeCC---------CcEeeeccCcc
Confidence 24677898887665554311 111112223332 56677777743 35778887653
No 73
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.32 E-value=2.9 Score=47.28 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=67.5
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCCCC---CC---ceeeEEEEECCEEEEEeCccCCCCCCcc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP---PP---RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P---~p---Rs~ha~~~~~~~iyvfGG~~~~~~~~~~ 152 (643)
++.||+... .+.|+.+|..++ .|+.-...... .. ....+.++.++.||+...
T Consensus 66 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---------- 125 (668)
T 1kv9_A 66 DGVIYTSMS----------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---------- 125 (668)
T ss_dssp TTEEEEEEG----------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT----------
T ss_pred CCEEEEECC----------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC----------
Confidence 788888765 247999998876 48864321100 00 011233456888887542
Q ss_pred eecCeEEEEECCCCc--EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEec
Q 006473 153 HHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (643)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~ 225 (643)
-..++.||..|++ |+.-............+.++.++.||+-.+.... .....|+.||+.+.+ |+.-.
T Consensus 126 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 126 --DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY----GVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp --TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEES
T ss_pred --CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCc----CCCCEEEEEECCCCcEEEEecc
Confidence 1468999998875 8765421111111222345668888774322110 124579999998765 87643
No 74
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.30 E-value=1.8 Score=44.38 Aligned_cols=193 Identities=9% Similarity=-0.034 Sum_probs=96.0
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
++...| ++.+++.|+. + +.+.+|+........+... ...-.+++.. ++..++.|+..
T Consensus 113 ~~~~s~--~~~~l~~~~~--d-------g~i~i~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d------- 170 (425)
T 1r5m_A 113 CLAWSH--DGNSIVTGVE--N-------GELRLWNKTGALLNVLNFH----RAPIVSVKWNKDGTHIISMDVE------- 170 (425)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTSCEEEEECCC----CSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEEcC--CCCEEEEEeC--C-------CeEEEEeCCCCeeeeccCC----CccEEEEEECCCCCEEEEEecC-------
Confidence 344444 5677777772 2 3678888555544444321 1112223332 45555566542
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCC--------------ceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPR--------------SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~R--------------s~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~ 217 (643)
..+.+||+.+......-. .+... .-.+++...+..+++|+. -..+.+||+.
T Consensus 171 ----~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~i~~~d~~ 235 (425)
T 1r5m_A 171 ----NVTILWNVISGTVMQHFE--LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP---------KGAIFVYQIT 235 (425)
T ss_dssp ----CCEEEEETTTTEEEEEEC--CC---------------CCCBSCCEEEETTEEEEECG---------GGCEEEEETT
T ss_pred ----CeEEEEECCCCcEEEEee--ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC---------CCeEEEEEcC
Confidence 357788888776543322 11111 022233333344566664 2468899988
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCC
Q 006473 218 QFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP 296 (643)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~ 296 (643)
+..-...-.. ....-.+++.. ++.+++.|+.++. +.+||+.+......-. ...
T Consensus 236 ~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~----~~~ 289 (425)
T 1r5m_A 236 EKTPTGKLIG------HHGPISVLEFNDTNKLLLSASDDGT----------------LRIWHGGNGNSQNCFY----GHS 289 (425)
T ss_dssp CSSCSEEECC------CSSCEEEEEEETTTTEEEEEETTSC----------------EEEECSSSBSCSEEEC----CCS
T ss_pred CCceeeeecc------CCCceEEEEECCCCCEEEEEcCCCE----------------EEEEECCCCccceEec----CCC
Confidence 7543222111 11111223333 5567777776654 7788876653322211 112
Q ss_pred ceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 297 RAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 297 R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
..-.++++..+.+++.|+.. ..|.+||+.+.+
T Consensus 290 ~~i~~~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~ 321 (425)
T 1r5m_A 290 QSIVSASWVGDDKVISCSMD--------------GSVRLWSLKQNT 321 (425)
T ss_dssp SCEEEEEEETTTEEEEEETT--------------SEEEEEETTTTE
T ss_pred ccEEEEEECCCCEEEEEeCC--------------CcEEEEECCCCc
Confidence 22344555533366666543 358899987764
No 75
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.30 E-value=2.9 Score=42.48 Aligned_cols=174 Identities=14% Similarity=0.090 Sum_probs=88.9
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
.+.+|++|- . .-+++..-...+|+.+.....+......++...++.+|+.|.. ..+++
T Consensus 46 ~~~~~~~G~---~-------g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~------------g~i~~ 103 (327)
T 2xbg_A 46 RHHGWLVGV---N-------ATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEP------------PIMLH 103 (327)
T ss_dssp SSCEEEEET---T-------TEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEET------------TEEEE
T ss_pred CCcEEEEcC---C-------CeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECC------------CeEEE
Confidence 567888653 1 2355543334589988643211122334444457788887521 23444
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccce
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF 239 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~ 239 (643)
-.-.-.+|+.+.... +.+-..+.++. -++.+|+.|.. ..+++-.-.-.+|+.+... .+..-+
T Consensus 104 S~DgG~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~----------g~v~~S~DgG~tW~~~~~~------~~~~~~ 166 (327)
T 2xbg_A 104 TTDGGQSWSQIPLDP-KLPGSPRLIKALGNGSAEMITNV----------GAIYRTKDSGKNWQALVQE------AIGVMR 166 (327)
T ss_dssp ESSTTSSCEECCCCT-TCSSCEEEEEEEETTEEEEEETT----------CCEEEESSTTSSEEEEECS------CCCCEE
T ss_pred ECCCCCCceECcccc-CCCCCeEEEEEECCCCEEEEeCC----------ccEEEEcCCCCCCEEeecC------CCcceE
Confidence 222346899986521 11112233333 36788877641 1244332234679998754 122334
Q ss_pred eEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEe-CCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEecc
Q 006473 240 QFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD-PRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGG 314 (643)
Q Consensus 240 s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd-~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG 314 (643)
.++.. ++.+|++|- .+. +++-. ....+|+.+.. +.+...+.+++. ++.+|+++.
T Consensus 167 ~~~~~~~~~~~~~g~-~G~----------------~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~ 223 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSS-RGS----------------FYSTWEPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVN 223 (327)
T ss_dssp EEEECTTSCEEEEET-TSS----------------EEEEECTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEEET
T ss_pred EEEEcCCCcEEEEEC-CCc----------------EEEEeCCCCCceeECCC----CCCCccceeEECCCCCEEEEeC
Confidence 44444 556666653 222 44433 23678999853 233444555543 567777663
No 76
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.29 E-value=1.8 Score=43.34 Aligned_cols=206 Identities=7% Similarity=-0.038 Sum_probs=97.6
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
+++..| ++.+++.|+. -+.+.+||+.+.+-...-... ...-.+++.. ++.+++.|+..
T Consensus 37 ~~~~s~--~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~~~d------- 95 (369)
T 3zwl_B 37 QVKYNK--EGDLLFSCSK---------DSSASVWYSLNGERLGTLDGH---TGTIWSIDVDCFTKYCVTGSAD------- 95 (369)
T ss_dssp EEEECT--TSCEEEEEES---------SSCEEEEETTTCCEEEEECCC---SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEEcC--CCCEEEEEeC---------CCEEEEEeCCCchhhhhhhhc---CCcEEEEEEcCCCCEEEEEeCC-------
Confidence 344444 5677777772 246888998877654332211 1111222222 45566666642
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCc----eEEecc
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK----WQEIKP 226 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~----W~~v~~ 226 (643)
..+.+||+.+.+....-. .+.+ -.+++.. ++..++.++..... ....+.+||+.+.. +.....
T Consensus 96 ----g~i~iwd~~~~~~~~~~~--~~~~--v~~~~~~~~~~~l~~~~~~~~~----~~g~i~~~d~~~~~~~~~~~~~~~ 163 (369)
T 3zwl_B 96 ----YSIKLWDVSNGQCVATWK--SPVP--VKRVEFSPCGNYFLAILDNVMK----NPGSINIYEIERDSATHELTKVSE 163 (369)
T ss_dssp ----TEEEEEETTTCCEEEEEE--CSSC--EEEEEECTTSSEEEEEECCBTT----BCCEEEEEEEEECTTTCCEEEECS
T ss_pred ----CeEEEEECCCCcEEEEee--cCCC--eEEEEEccCCCEEEEecCCccC----CCCEEEEEEecCCccceeeccccc
Confidence 458889998876544322 1111 1222222 44555555532111 12456677665432 221111
Q ss_pred CCCCCCC--CCc-cceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC-CeeEEeccCCCCCCCceeeE
Q 006473 227 RFGSMWP--SPR-SGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WEWSKVKKIGMPPGPRAGFS 301 (643)
Q Consensus 227 ~~~~~~P--~~R-~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~W~~l~~~g~~P~~R~g~s 301 (643)
.+..... ... .-.+++.. ++.+++.|+.++. +.+||+.+ ..-...-.. ....-.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~~~~~~~~----~~~~v~~ 223 (369)
T 3zwl_B 164 EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK----------------ISKYDVSNNYEYVDSIDL----HEKSISD 223 (369)
T ss_dssp SCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSE----------------EEEEETTTTTEEEEEEEC----CSSCEEE
T ss_pred ceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCE----------------EEEEECCCCcEeEEEEec----CCCceeE
Confidence 1000000 000 11122222 5566777766544 78899876 332222111 1112233
Q ss_pred EEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEE
Q 006473 302 MCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (643)
Q Consensus 302 ~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (643)
+++. ++.+++.|+.. +.|.+||+.+.+...
T Consensus 224 ~~~~~~~~~l~~~~~d--------------~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 224 MQFSPDLTYFITSSRD--------------TNSFLVDVSTLQVLK 254 (369)
T ss_dssp EEECTTSSEEEEEETT--------------SEEEEEETTTCCEEE
T ss_pred EEECCCCCEEEEecCC--------------ceEEEEECCCCceee
Confidence 4443 56667777643 358999998765443
No 77
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.27 E-value=1.9 Score=49.72 Aligned_cols=183 Identities=15% Similarity=0.213 Sum_probs=97.9
Q ss_pred cEEEEECCCCcEEEecCCCCCCCce-eeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs-~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
-+++||+.+.+...+..... .+.. -.+++.. ++.|||... +.+++||..++++..+.. +.+..
T Consensus 108 Gl~~yd~~~~~f~~~~~~~~-~~~~~i~~i~~d~~g~lwi~t~-------------~gl~~~~~~~~~~~~~~~-~~~~~ 172 (795)
T 4a2l_A 108 GLSRYDEEKDIFQNFFYEKN-GKHLQVNGIEEISPEQLLISTP-------------EGLIMFDIKESKFIDDSF-STAMH 172 (795)
T ss_dssp CEEEEETTTTEEEEECCEET-TEECCCCEEEEEETTEEEEEET-------------TEEEEEETTTTEEECSSS-CHHHH
T ss_pred chheeCCCCCeEEecccccc-CCCceEEEEEECCCCCEEEEEC-------------CceEEEECCCCEEEeccC-CCCCC
Confidence 57899999998887653210 1111 1223233 778887542 458899999888876543 11111
Q ss_pred CceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEE-eCCEEEEEcCCCCC
Q 006473 180 RSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV-YQDEVFLYGGYSKE 257 (643)
Q Consensus 180 Rs~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~-~~~~iyv~GG~~~~ 257 (643)
..-.+++. -++.||| |.. ...|++|++.+.++..+... +....-.+++. .++.|+|.. ...
T Consensus 173 ~~i~~i~~d~~g~lwi-gt~---------~~Gl~~~~~~~~~~~~~~~~-----~~~~~i~~i~~d~~g~lwigt-~~~- 235 (795)
T 4a2l_A 173 KTIASTLYRQGDQIYI-GTS---------TDGLYTYSITQKTFEKVIPI-----LGTKQIQAILQQSPTRIWVAT-EGA- 235 (795)
T ss_dssp TCCEEEEEEETTEEEE-EES---------SSCEEEEETTTCCEEECC---------CCCEEEEEEEETTEEEEEE-BSS-
T ss_pred cceEEEEECCCCCEEE-EEC---------CCCEEEEeCCCCeEEEecCC-----CCCCeeEEEEEcCCCCEEEEE-CCC-
Confidence 10112222 3788887 321 13588999999888776432 11111122332 267777642 221
Q ss_pred CCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCC---CceeeEEEEE-CCeEEEeccccccccCccccccccCCcE
Q 006473 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG---PRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (643)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~---~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl 333 (643)
-+++||+.+.++.........|. ...-.+++.. ++.|+| |.. +-|
T Consensus 236 ---------------Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~---------------~Gl 284 (795)
T 4a2l_A 236 ---------------GLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTF---------------NDL 284 (795)
T ss_dssp ---------------CEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EES---------------SCE
T ss_pred ---------------CeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeC---------------Chh
Confidence 28899999988887754211111 1122233333 456665 321 126
Q ss_pred EEEECCCCcEEEeE
Q 006473 334 YGFQLDNHRWYPLE 347 (643)
Q Consensus 334 ~~yd~~t~~W~~l~ 347 (643)
++||+.+..|..+.
T Consensus 285 ~~~~~~~~~~~~~~ 298 (795)
T 4a2l_A 285 NIYHEGTDSFASYS 298 (795)
T ss_dssp EEEETTTTEEEEEC
T ss_pred heEcCCCCeEEEEe
Confidence 77777777666654
No 78
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.25 E-value=4 Score=46.32 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=67.2
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCCCC---CC---ceeeEEEEECCEEEEEeCccCCCCCCcc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP---PP---RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P---~p---Rs~ha~~~~~~~iyvfGG~~~~~~~~~~ 152 (643)
++.||+.+. .+.|+++|..++ .|+.-...... .. ....+.++.++.||+...
T Consensus 70 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---------- 129 (689)
T 1yiq_A 70 DGVMYTTGP----------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---------- 129 (689)
T ss_dssp TTEEEEECG----------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT----------
T ss_pred CCEEEEEcC----------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc----------
Confidence 788888665 247999999876 48854321100 00 011233456888887642
Q ss_pred eecCeEEEEECCCCc--EEEecc-CCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEe
Q 006473 153 HHYKDFWMLDLKTNQ--WEQLNL-KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEI 224 (643)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~-~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v 224 (643)
-..++.+|..|++ |+.-.. ..........+.++.++.||+-.+.... ..-..|+.||..+.+ |+.-
T Consensus 130 --dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 130 --DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEF----GVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp --TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEE
T ss_pred --CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCcc----CCCCEEEEEECCCCcEEEEec
Confidence 1468899998874 876532 1001111122335668888774322111 124579999998866 8765
No 79
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.25 E-value=0.2 Score=57.66 Aligned_cols=106 Identities=9% Similarity=0.165 Sum_probs=61.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--C--CEEEEEeCccCCCCCCcceecC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYK 156 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~--~~iyvfGG~~~~~~~~~~~~~~ 156 (643)
++.+++.||. + +.+.+||+....+..+.... .......++.+ . +.+++.|+.. .
T Consensus 20 dg~~latg~~--d-------g~I~vwd~~~~~~~~~~~l~--~h~~~V~~l~~s~~~~~~~l~s~s~D-----------g 77 (753)
T 3jro_A 20 YGKRLATCSS--D-------KTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYD-----------G 77 (753)
T ss_dssp SSCCEEEEET--T-------TEEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCTTSCSEEEEEETT-----------S
T ss_pred CCCeEEEEEC--C-------CcEEEEecCCCCCccceecc--CCcCceEEEEecCCCCCCEEEEEeCC-----------C
Confidence 5667777772 2 36788888877777654322 11222223333 2 6677777753 3
Q ss_pred eEEEEECCCCcEEEeccCCCCCCCceeEEEEE--C--CEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~--~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
.+.+||+.++.|..+... ......-.++.+ + +.+++.||.+ ..+.+||+.+.
T Consensus 78 ~I~vwd~~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~~l~sgs~d---------g~I~vwdl~~~ 133 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVH--AVHSASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKEN 133 (753)
T ss_dssp CEEEEEEETTEEEEEEEE--CCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCSS
T ss_pred eEEEEECCCCcccccccc--cCCCCCeEEEEECCCCCCCEEEEEeCC---------CcEEEEEeecC
Confidence 477888888887766542 222222233333 3 6677777743 35778887665
No 80
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=95.24 E-value=0.83 Score=51.04 Aligned_cols=206 Identities=8% Similarity=-0.099 Sum_probs=101.9
Q ss_pred ccEEEEECC--C-CcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCC------CcEE
Q 006473 101 GDLYRYDVE--K-QEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT------NQWE 169 (643)
Q Consensus 101 ndv~~yd~~--~-~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t------~~W~ 169 (643)
..||.+++. . ...+.++.............+++ +++.+++......... .......+|++|+.+ ....
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 180 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEG-PSDVRRFLAAVPLDGSAAADRSAVR 180 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSS-TTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCC-CCCceeEEEEEECCCCccccCCcee
Confidence 478999987 4 66666654210001122222233 4444444433210000 011246899999988 6766
Q ss_pred Eec-cCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcC-CC---ceEEeccCCCCCCCCCccceeEE
Q 006473 170 QLN-LKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QF---KWQEIKPRFGSMWPSPRSGFQFF 242 (643)
Q Consensus 170 ~~~-~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~-t~---~W~~v~~~~~~~~P~~R~~~s~~ 242 (643)
.+. . .+ . ......+ +++.+++......... --...||++|+. +. ....+... . .......+
T Consensus 181 ~l~~~--~~--~-~~~~~~~SpDG~~la~~~~~~~~~~-~~~~~i~~~d~~~~g~~~~~~~l~~~-----~-~~~~~~~~ 248 (662)
T 3azo_A 181 ELSDD--AH--R-FVTGPRLSPDGRQAVWLAWDHPRMP-WEGTELKTARVTEDGRFADTRTLLGG-----P-EEAIAQAE 248 (662)
T ss_dssp ESSCS--CS--S-EECCCEECTTSSEEEEEEECTTCCT-TTCEEEEEEEECTTSCEEEEEEEEEE-----T-TBCEEEEE
T ss_pred EEEec--CC--C-cccCceECCCCCEEEEEECCCCCCC-CCCcEEEEEEECCCCcccccEEeCCC-----C-CceEcceE
Confidence 654 2 11 1 1111223 5554555544321110 012579999998 56 34433321 0 11112222
Q ss_pred Ee-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCC---CCCCce-eeEEEEE-CCeEEEecccc
Q 006473 243 VY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM---PPGPRA-GFSMCVH-KKRALLFGGVV 316 (643)
Q Consensus 243 ~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~---~P~~R~-g~s~~~~-~~~iyvfGG~~ 316 (643)
.. +++||+.+...+. ..+|++|+.+..|..+..... .|.-.. ..++++. ++++|+.+..
T Consensus 249 ~spdg~l~~~~~~~~~--------------~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~- 313 (662)
T 3azo_A 249 WAPDGSLIVATDRTGW--------------WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK- 313 (662)
T ss_dssp ECTTSCEEEEECTTSS--------------CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-
T ss_pred ECCCCeEEEEECCCCC--------------eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-
Confidence 22 5667776654322 359999998888888754211 111110 1234444 5677666543
Q ss_pred ccccCccccccccCCcEEEEECCCCcEEEe
Q 006473 317 DMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (643)
Q Consensus 317 ~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (643)
. ...||.+|+.+.....|
T Consensus 314 ~------------~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 314 G------------AAVLGILDPESGELVDA 331 (662)
T ss_dssp S------------SCEEEEEETTTTEEEEC
T ss_pred C------------ccEEEEEECCCCcEEEe
Confidence 2 35688889887665444
No 81
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=95.20 E-value=0.76 Score=51.35 Aligned_cols=225 Identities=12% Similarity=-0.022 Sum_probs=116.7
Q ss_pred EEEEeccCCCEEEEEcceecCC-CCceeeccEEEEECCC------CcEEEec-CCCCCCCceeeEEEEE-CCEEEEEeCc
Q 006473 73 SLNINPLKETELILYGGEFYNG-NKTYVYGDLYRYDVEK------QEWKVIS-SPNSPPPRSAHQAVSW-KNYLYIFGGE 143 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g-~~~~~~ndv~~yd~~~------~~W~~l~-s~~~P~pRs~ha~~~~-~~~iyvfGG~ 143 (643)
.++..| +++.++++...... ........||++|+.+ .+.+.+. ... ......+.- +++.+++...
T Consensus 134 ~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~SpDG~~la~~~~ 207 (662)
T 3azo_A 134 DPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAH----RFVTGPRLSPDGRQAVWLAW 207 (662)
T ss_dssp EEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCS----SEECCCEECTTSSEEEEEEE
T ss_pred CcEECC--CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCC----CcccCceECCCCCEEEEEEC
Confidence 444555 55555555532110 0112346899999998 7777765 321 111111221 4443444332
Q ss_pred cCCCCCCcceecCeEEEEECC-CC---cEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcC
Q 006473 144 FTSPNQERFHHYKDFWMLDLK-TN---QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (643)
Q Consensus 144 ~~~~~~~~~~~~~dv~~yD~~-t~---~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~ 217 (643)
...... .....+|++|+. ++ ....+... . . .......+ +++||+.+...+ ...||++|+.
T Consensus 208 ~~~~~~---~~~~~i~~~d~~~~g~~~~~~~l~~~--~-~-~~~~~~~~spdg~l~~~~~~~~-------~~~l~~~~~~ 273 (662)
T 3azo_A 208 DHPRMP---WEGTELKTARVTEDGRFADTRTLLGG--P-E-EAIAQAEWAPDGSLIVATDRTG-------WWNLHRVDPA 273 (662)
T ss_dssp CTTCCT---TTCEEEEEEEECTTSCEEEEEEEEEE--T-T-BCEEEEEECTTSCEEEEECTTS-------SCEEEEECTT
T ss_pred CCCCCC---CCCcEEEEEEECCCCcccccEEeCCC--C-C-ceEcceEECCCCeEEEEECCCC-------CeEEEEEECC
Confidence 221110 012579999998 56 44444321 1 1 11222333 566766554321 2479999998
Q ss_pred CCceEEeccCCCCC-CCCCcc-ceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCC
Q 006473 218 QFKWQEIKPRFGSM-WPSPRS-GFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP 294 (643)
Q Consensus 218 t~~W~~v~~~~~~~-~P~~R~-~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 294 (643)
+..+..+....... .|.-.. ..+++.. ++.+++.+.. +. ..+|.+|+.+.....+...
T Consensus 274 ~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~--------------~~l~~~d~~~~~~~~l~~~---- 334 (662)
T 3azo_A 274 TGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA--------------AVLGILDPESGELVDAAGP---- 334 (662)
T ss_dssp TCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS--------------CEEEEEETTTTEEEECCSS----
T ss_pred CCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc--------------cEEEEEECCCCcEEEecCC----
Confidence 88888776542111 011111 1123333 6667666654 32 4588999888877666431
Q ss_pred CCceeeEE-EEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 295 GPRAGFSM-CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 295 ~~R~g~s~-~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
. ....++ ...++.+++..+... ....||.+|+.+.+...+..
T Consensus 335 ~-~~~~~~~s~~~~~~~~~~~~~~-----------~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 335 W-TEWAATLTVSGTRAVGVAASPR-----------TAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp C-CEEEEEEEEETTEEEEEEEETT-----------EEEEEEEEETTTCCEEEEES
T ss_pred C-CeEEEEEecCCCEEEEEEcCCC-----------CCCEEEEEECCCCceEEeec
Confidence 1 112233 445666666554321 13569999999998887754
No 82
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=95.20 E-value=2.8 Score=42.41 Aligned_cols=136 Identities=13% Similarity=0.027 Sum_probs=70.3
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
..+.+||+.+......-. .... .-.+++.. ++.+++.|+.+ ..+.+||+.+..-...-.. .
T Consensus 164 ~~i~~wd~~~~~~~~~~~--~h~~-~v~~~~~~~~~~~l~sg~~d---------~~v~~wd~~~~~~~~~~~~------h 225 (340)
T 1got_B 164 TTCALWDIETGQQTTTFT--GHTG-DVMSLSLAPDTRLFVSGACD---------ASAKLWDVREGMCRQTFTG------H 225 (340)
T ss_dssp SCEEEEETTTTEEEEEEC--CCSS-CEEEEEECTTSSEEEEEETT---------SCEEEEETTTCSEEEEECC------C
T ss_pred CcEEEEECCCCcEEEEEc--CCCC-ceEEEEECCCCCEEEEEeCC---------CcEEEEECCCCeeEEEEcC------C
Confidence 357788988876443211 1111 11122222 55677777753 4578888876643222111 1
Q ss_pred CccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceee-EEEEE-CCeEEE
Q 006473 235 PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF-SMCVH-KKRALL 311 (643)
Q Consensus 235 ~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~-s~~~~-~~~iyv 311 (643)
...-.+++.. ++.+++.|+.++. +.+||+.+..-...-.. +....+. ++++. ++++++
T Consensus 226 ~~~v~~v~~~p~~~~l~s~s~d~~----------------v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~ 286 (340)
T 1got_B 226 ESDINAICFFPNGNAFATGSDDAT----------------CRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEE
T ss_pred cCCEEEEEEcCCCCEEEEEcCCCc----------------EEEEECCCCcEEEEEcc---CCcccceEEEEECCCCCEEE
Confidence 1111222333 6677888887765 77888876543222111 1111222 33333 577777
Q ss_pred eccccccccCccccccccCCcEEEEECCCCc
Q 006473 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.|+.. ..|.+||+.+..
T Consensus 287 ~g~~d--------------~~i~vwd~~~~~ 303 (340)
T 1got_B 287 AGYDD--------------FNCNVWDALKAD 303 (340)
T ss_dssp EEETT--------------SEEEEEETTTCC
T ss_pred EECCC--------------CeEEEEEcccCc
Confidence 77653 358899987643
No 83
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.18 E-value=0.65 Score=47.44 Aligned_cols=189 Identities=11% Similarity=0.126 Sum_probs=95.4
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~ 149 (643)
.++...| ++.+++.||. + ..+.+||..++.|............ ....+.+ ++.+++.|+..
T Consensus 20 ~~l~~sp--~g~~las~~~--D-------~~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~s~D----- 82 (345)
T 3fm0_A 20 WFLAWNP--AGTLLASCGG--D-------RRIRIWGTEGDSWICKSVLSEGHQR-TVRKVAWSPCGNYLASASFD----- 82 (345)
T ss_dssp EEEEECT--TSSCEEEEET--T-------SCEEEEEEETTEEEEEEEECSSCSS-CEEEEEECTTSSEEEEEETT-----
T ss_pred EEEEECC--CCCEEEEEcC--C-------CeEEEEEcCCCcceeeeeeccccCC-cEEEEEECCCCCEEEEEECC-----
Confidence 4566666 6788888883 2 3577888888887643211000111 1223333 46667777653
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc-eEEecc
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIKP 226 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~-W~~v~~ 226 (643)
..+.++|..+..+..+.. +..-...-.++.+ ++.+++.|+.+ ..+.+||+.+.. +..+..
T Consensus 83 ------~~v~iw~~~~~~~~~~~~--~~~h~~~v~~v~~sp~~~~l~s~s~D---------~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 83 ------ATTCIWKKNQDDFECVTT--LEGHENEVKSVAWAPSGNLLATCSRD---------KSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp ------SCEEEEEECCC-EEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEEECTTSCEEEEEE
T ss_pred ------CcEEEEEccCCCeEEEEE--ccCCCCCceEEEEeCCCCEEEEEECC---------CeEEEEECCCCCCeEEEEE
Confidence 235566766666654433 1111111122333 55666777653 357778876542 333332
Q ss_pred CCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE
Q 006473 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (643)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~ 305 (643)
... ....-.+++.. ++.+++.|+.++. +.+|+..+..|..+..... ....-.++++.
T Consensus 146 ~~~----h~~~v~~~~~~p~~~~l~s~s~d~~----------------i~~w~~~~~~~~~~~~~~~--h~~~v~~l~~s 203 (345)
T 3fm0_A 146 LNS----HTQDVKHVVWHPSQELLASASYDDT----------------VKLYREEEDDWVCCATLEG--HESTVWSLAFD 203 (345)
T ss_dssp ECC----CCSCEEEEEECSSSSCEEEEETTSC----------------EEEEEEETTEEEEEEEECC--CSSCEEEEEEC
T ss_pred ecC----cCCCeEEEEECCCCCEEEEEeCCCc----------------EEEEEecCCCEEEEEEecC--CCCceEEEEEC
Confidence 211 11111122222 5667778877655 6677877777765543211 11112233443
Q ss_pred -CCeEEEecccc
Q 006473 306 -KKRALLFGGVV 316 (643)
Q Consensus 306 -~~~iyvfGG~~ 316 (643)
+++.++.|+..
T Consensus 204 p~g~~l~s~s~D 215 (345)
T 3fm0_A 204 PSGQRLASCSDD 215 (345)
T ss_dssp TTSSEEEEEETT
T ss_pred CCCCEEEEEeCC
Confidence 56777777653
No 84
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.17 E-value=2.7 Score=46.21 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=56.4
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEE-ecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCe
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~-l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
++.+|+.+.. .+.|.++|+.+++... +..+. .-|.++.. +..||+.+.. +.
T Consensus 148 ~~~~~vs~~~---------d~~V~v~D~~t~~~~~~i~~g~-----~~~~v~~spdg~~l~v~~~d------------~~ 201 (543)
T 1nir_A 148 PNLFSVTLRD---------AGQIALVDGDSKKIVKVIDTGY-----AVHISRMSASGRYLLVIGRD------------AR 201 (543)
T ss_dssp GGEEEEEEGG---------GTEEEEEETTTCCEEEEEECST-----TEEEEEECTTSCEEEEEETT------------SE
T ss_pred CCEEEEEEcC---------CCeEEEEECCCceEEEEEecCc-----ccceEEECCCCCEEEEECCC------------Ce
Confidence 5788887762 3578889999886543 32221 14544443 4567776531 46
Q ss_pred EEEEEC--CCCcEEEeccCCCCCCCceeEEEEE-----CC-EEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 158 FWMLDL--KTNQWEQLNLKGCPSPRSGHRMVLY-----KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 158 v~~yD~--~t~~W~~~~~~g~P~~Rs~h~~~~~-----~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
+.+||+ .+.+-... .+....-+.+++- ++ +||+ +++. .+.+.+||..+.+-
T Consensus 202 V~v~D~~~~t~~~~~~----i~~g~~p~~va~sp~~~~dg~~l~v-~~~~--------~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 202 IDMIDLWAKEPTKVAE----IKIGIEARSVESSKFKGYEDRYTIA-GAYW--------PPQFAIMDGETLEP 260 (543)
T ss_dssp EEEEETTSSSCEEEEE----EECCSEEEEEEECCSTTCTTTEEEE-EEEE--------SSEEEEEETTTCCE
T ss_pred EEEEECcCCCCcEEEE----EecCCCcceEEeCCCcCCCCCEEEE-EEcc--------CCeEEEEecccccc
Confidence 889999 66553221 1222222233332 34 4554 4432 35678889877653
No 85
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=95.16 E-value=1 Score=46.73 Aligned_cols=202 Identities=12% Similarity=0.092 Sum_probs=98.8
Q ss_pred EEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEE
Q 006473 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWML 161 (643)
Q Consensus 83 ~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~y 161 (643)
.+++.|+. -+.+.+||+.+.+....-... .....-.+++.. ++.+++.|+.. ..+.+|
T Consensus 145 ~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~iw 203 (402)
T 2aq5_A 145 NVLLSAGC---------DNVILVWDVGTGAAVLTLGPD-VHPDTIYSVDWSRDGALICTSCRD-----------KRVRVI 203 (402)
T ss_dssp TEEEEEET---------TSCEEEEETTTTEEEEEECTT-TCCSCEEEEEECTTSSCEEEEETT-----------SEEEEE
T ss_pred CEEEEEcC---------CCEEEEEECCCCCccEEEecC-CCCCceEEEEECCCCCEEEEEecC-----------CcEEEE
Confidence 46767762 246889999988765432101 011112222222 56666666642 468899
Q ss_pred ECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCce-EEeccCCCCCCCCCccce
Q 006473 162 DLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRFGSMWPSPRSGF 239 (643)
Q Consensus 162 D~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~~~~~P~~R~~~ 239 (643)
|+.+..-...-..+....+. ..++.. ++.+++.|. ... .-..+.+||+.+..- ...... .....-.
T Consensus 204 d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~g~-~~~-----~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~ 271 (402)
T 2aq5_A 204 EPRKGTVVAEKDRPHEGTRP-VHAVFVSEGKILTTGF-SRM-----SERQVALWDTKHLEEPLSLQEL-----DTSSGVL 271 (402)
T ss_dssp ETTTTEEEEEEECSSCSSSC-CEEEECSTTEEEEEEE-CTT-----CCEEEEEEETTBCSSCSEEEEC-----CCCSSCE
T ss_pred eCCCCceeeeeccCCCCCcc-eEEEEcCCCcEEEEec-cCC-----CCceEEEEcCccccCCceEEec-----cCCCcee
Confidence 99887654332111111111 223332 667666652 111 135688899876432 111111 1111112
Q ss_pred eEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe--eEEeccCCCCCCCceeeEEEEECCeEEEeccc
Q 006473 240 QFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (643)
Q Consensus 240 s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~ 315 (643)
+++.. +..|++.|+.++. +.+|++.+.. ...+.... ....-.++++..+..+++.+.
T Consensus 272 ~~~~s~~~~~l~~~g~~dg~----------------i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~sp~~~~~~s~~ 332 (402)
T 2aq5_A 272 LPFFDPDTNIVYLCGKGDSS----------------IRYFEITSEAPFLHYLSMFS---SKESQRGMGYMPKRGLEVNKC 332 (402)
T ss_dssp EEEEETTTTEEEEEETTCSC----------------EEEEEECSSTTCEEEEEEEC---CSSCCSEEEECCGGGSCGGGT
T ss_pred EEEEcCCCCEEEEEEcCCCe----------------EEEEEecCCCcceEeecccc---cCCcccceEEecccccceecc
Confidence 22333 5567777766554 6777776654 33333211 111122344444333333321
Q ss_pred cccccCccccccccCCcEEEEECCCCcEEEeEecCC
Q 006473 316 VDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKE 351 (643)
Q Consensus 316 ~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~ 351 (643)
..+.+|++.++...++....+
T Consensus 333 ---------------~~~~~~~l~~~~~~~i~~~~p 353 (402)
T 2aq5_A 333 ---------------EIARFYKLHERKCEPIAMTVP 353 (402)
T ss_dssp ---------------EEEEEEEEETTEEEEEEEECC
T ss_pred ---------------eeEEEEEcCCCcEEEEEEEcc
Confidence 247788888888777766443
No 86
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.15 E-value=1.8 Score=44.99 Aligned_cols=181 Identities=8% Similarity=-0.021 Sum_probs=95.1
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
+.+++||+.++....+.... ....-.+++.. ++.++++|+.. ..+.+||+.+.+....-. ..
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~----~~ 175 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETD--ESTYVASVKWSHDGSFLSVGLGN-----------GLVDIYDVESQTKLRTMA----GH 175 (401)
T ss_dssp TEEEEEETTTCCEEEEEECC--TTCCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCCEEEEEC----CC
T ss_pred CeEEEeeCCCCcEeEeeecC--CCCCEEEEEECCCCCEEEEECCC-----------CeEEEEECcCCeEEEEec----CC
Confidence 47899999998876554321 11112222222 55666666642 357888988776443321 11
Q ss_pred CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCC
Q 006473 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (643)
Q Consensus 180 Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~ 258 (643)
.....++.+++.+++.|+.+ ..+.+||+....-...... .....-.++... ++.+++.|+.++.
T Consensus 176 ~~~v~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~- 240 (401)
T 4aez_A 176 QARVGCLSWNRHVLSSGSRS---------GAIHHHDVRIANHQIGTLQ-----GHSSEVCGLAWRSDGLQLASGGNDNV- 240 (401)
T ss_dssp SSCEEEEEEETTEEEEEETT---------SEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSC-
T ss_pred CCceEEEEECCCEEEEEcCC---------CCEEEEecccCcceeeEEc-----CCCCCeeEEEEcCCCCEEEEEeCCCe-
Confidence 12223344466677777642 4688888874332111111 111111222233 6677888887655
Q ss_pred CCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--CCeEEEeccccccccCccccccccCCcEEEE
Q 006473 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGF 336 (643)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~y 336 (643)
+.+||+.+..-...-. .....-.++++. +..+++.||-.. -..|.+|
T Consensus 241 ---------------v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~ll~~~~gs~------------d~~i~i~ 289 (401)
T 4aez_A 241 ---------------VQIWDARSSIPKFTKT----NHNAAVKAVAWCPWQSNLLATGGGTM------------DKQIHFW 289 (401)
T ss_dssp ---------------EEEEETTCSSEEEEEC----CCSSCCCEEEECTTSTTEEEEECCTT------------TCEEEEE
T ss_pred ---------------EEEccCCCCCccEEec----CCcceEEEEEECCCCCCEEEEecCCC------------CCEEEEE
Confidence 7888887654332211 111122234444 456777775211 2459999
Q ss_pred ECCCCcEE
Q 006473 337 QLDNHRWY 344 (643)
Q Consensus 337 d~~t~~W~ 344 (643)
|+.+.+-.
T Consensus 290 d~~~~~~~ 297 (401)
T 4aez_A 290 NAATGARV 297 (401)
T ss_dssp ETTTCCEE
T ss_pred ECCCCCEE
Confidence 99876543
No 87
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=95.09 E-value=0.97 Score=44.73 Aligned_cols=210 Identities=7% Similarity=-0.088 Sum_probs=106.7
Q ss_pred CceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCC
Q 006473 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~ 148 (643)
...+.+..|. ++.||+.+.. .+.|++|++.+. .+.+... . ..-++++.. ++.||+....
T Consensus 29 ~~eg~~~d~~-g~~l~~~~~~---------~~~i~~~~~~~~-~~~~~~~---~-~~~~~l~~~~dg~l~v~~~~----- 88 (296)
T 3e5z_A 29 WTEGPVYVPA-RSAVIFSDVR---------QNRTWAWSDDGQ-LSPEMHP---S-HHQNGHCLNKQGHLIACSHG----- 88 (296)
T ss_dssp SEEEEEEEGG-GTEEEEEEGG---------GTEEEEEETTSC-EEEEESS---C-SSEEEEEECTTCCEEEEETT-----
T ss_pred cccCCeEeCC-CCEEEEEeCC---------CCEEEEEECCCC-eEEEECC---C-CCcceeeECCCCcEEEEecC-----
Confidence 4556666662 2448887762 247899999988 6666432 1 122333333 5678876532
Q ss_pred CCcceecCeEEEEECCCCcEEEeccCC--CCCCCceeEEEEECCEEEEE----eeeecC----CCceeeeccEEEEEcCC
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQLNLKG--CPSPRSGHRMVLYKHKIIVF----GGFYDT----LREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g--~P~~Rs~h~~~~~~~~lyvf----GG~~~~----~~~~~~~~dv~~yD~~t 218 (643)
...+++||+.+++...+.... .+..+....++--++.||+. |..... .........||+|++.
T Consensus 89 ------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 89 ------LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp ------TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred ------CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 246899999888877663310 11111112222226788886 432100 0000012479999987
Q ss_pred CceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC-CCee-EEecc-CCCCC
Q 006473 219 FKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEW-SKVKK-IGMPP 294 (643)
Q Consensus 219 ~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W-~~l~~-~g~~P 294 (643)
.+...+... ...+ .+++.. ++.+++.+.... .+++|++. +.+. ..... .....
T Consensus 162 g~~~~~~~~----~~~~---~gi~~s~dg~~lv~~~~~~----------------~i~~~~~~~~g~~~~~~~~~~~~~~ 218 (296)
T 3e5z_A 162 GTLSAPIRD----RVKP---NGLAFLPSGNLLVSDTGDN----------------ATHRYCLNARGETEYQGVHFTVEPG 218 (296)
T ss_dssp SCEEEEECC----CSSE---EEEEECTTSCEEEEETTTT----------------EEEEEEECSSSCEEEEEEEECCSSS
T ss_pred CCEEEeecC----CCCC---ccEEECCCCCEEEEeCCCC----------------eEEEEEECCCCcCcCCCeEeeCCCC
Confidence 555444322 0111 223333 455555443322 47888875 4444 21111 11001
Q ss_pred CCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 295 GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 295 ~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
.++ ++++. +++||+..+ +.|++||+.......+..
T Consensus 219 ~p~---~i~~d~~G~l~v~~~----------------~~v~~~~~~g~~~~~~~~ 254 (296)
T 3e5z_A 219 KTD---GLRVDAGGLIWASAG----------------DGVHVLTPDGDELGRVLT 254 (296)
T ss_dssp CCC---SEEEBTTSCEEEEET----------------TEEEEECTTSCEEEEEEC
T ss_pred CCC---eEEECCCCCEEEEcC----------------CeEEEECCCCCEEEEEEC
Confidence 111 34443 577877661 348999998665555554
No 88
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.08 E-value=0.49 Score=48.80 Aligned_cols=190 Identities=8% Similarity=0.012 Sum_probs=95.5
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCc
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~ 151 (643)
+.+.| ++.+++.|+. + ..+.+||+.+.+-...-... . ..-.+++.. +..+++.||..
T Consensus 145 v~~sp--dg~~l~sgs~--d-------g~v~iwd~~~~~~~~~~~~h--~-~~v~~v~~s~~~~~~~~s~~~d------- 203 (357)
T 4g56_B 145 LSVFS--DGTQAVSGGK--D-------FSVKVWDLSQKAVLKSYNAH--S-SEVNCVAACPGKDTIFLSCGED------- 203 (357)
T ss_dssp EEECS--SSSEEEEEET--T-------SCEEEEETTTTEEEEEECCC--S-SCEEEEEECTTCSSCEEEEETT-------
T ss_pred EEECC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEEcCC--C-CCEEEEEEccCCCceeeeeccC-------
Confidence 34444 5667777772 2 35788898887654332211 1 111122222 34577777653
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE---CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~---~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
..+.+||+.+.+-..... .........++.+ ++.+++.|+.+ ..+.+||+.+.+-...-..
T Consensus 204 ----g~v~~wd~~~~~~~~~~~--~~~~~~~v~~v~~sp~~~~~la~g~~d---------~~i~~wd~~~~~~~~~~~~- 267 (357)
T 4g56_B 204 ----GRILLWDTRKPKPATRID--FCASDTIPTSVTWHPEKDDTFACGDET---------GNVSLVNIKNPDSAQTSAV- 267 (357)
T ss_dssp ----SCEEECCTTSSSCBCBCC--CTTCCSCEEEEEECTTSTTEEEEEESS---------SCEEEEESSCGGGCEEECC-
T ss_pred ----CceEEEECCCCceeeeee--eccccccccchhhhhcccceEEEeecc---------cceeEEECCCCcEeEEEec-
Confidence 346778887665322211 1111111223333 35677777642 3578888876542211111
Q ss_pred CCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-
Q 006473 229 GSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~- 305 (643)
...+. .+++.. +..+++.|+.++. +.+||+.+.+-.... +. ...-.++++.
T Consensus 268 ---~~~~v--~~l~~sp~~~~~lasgs~D~~----------------i~iwd~~~~~~~~~~--~H---~~~V~~vafsP 321 (357)
T 4g56_B 268 ---HSQNI--TGLAYSYHSSPFLASISEDCT----------------VAVLDADFSEVFRDL--SH---RDFVTGVAWSP 321 (357)
T ss_dssp ---CSSCE--EEEEECSSSSCCEEEEETTSC----------------EEEECTTSCEEEEEC--CC---SSCEEEEEECS
T ss_pred ---cceeE--EEEEEcCCCCCEEEEEeCCCE----------------EEEEECCCCcEeEEC--CC---CCCEEEEEEeC
Confidence 01111 122222 4466777776655 778888776544332 11 1112234443
Q ss_pred -CCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
++.+++.||.+ ..|.+|++.+
T Consensus 322 ~d~~~l~s~s~D--------------g~v~iW~~~~ 343 (357)
T 4g56_B 322 LDHSKFTTVGWD--------------HKVLHHHLPS 343 (357)
T ss_dssp SSTTEEEEEETT--------------SCEEEEECC-
T ss_pred CCCCEEEEEcCC--------------CeEEEEECCC
Confidence 57788888764 3488888754
No 89
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=95.07 E-value=1.6 Score=46.15 Aligned_cols=65 Identities=11% Similarity=-0.011 Sum_probs=35.9
Q ss_pred CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEE
Q 006473 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (643)
Q Consensus 135 ~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~y 214 (643)
+.+++.|+.. ..+.+||+.+.........+ ......+.+.. ++.+++.||. -..|.+|
T Consensus 210 ~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~~~-h~~~v~~~~~s-d~~~l~s~~~---------d~~v~vw 267 (450)
T 2vdu_B 210 HQFIITSDRD-----------EHIKISHYPQCFIVDKWLFG-HKHFVSSICCG-KDYLLLSAGG---------DDKIFAW 267 (450)
T ss_dssp CEEEEEEETT-----------SCEEEEEESCTTCEEEECCC-CSSCEEEEEEC-STTEEEEEES---------SSEEEEE
T ss_pred CcEEEEEcCC-----------CcEEEEECCCCceeeeeecC-CCCceEEEEEC-CCCEEEEEeC---------CCeEEEE
Confidence 6777877753 35778888766543321111 11111111222 6666667764 2468888
Q ss_pred EcCCCce
Q 006473 215 DLDQFKW 221 (643)
Q Consensus 215 D~~t~~W 221 (643)
|+.+.+.
T Consensus 268 d~~~~~~ 274 (450)
T 2vdu_B 268 DWKTGKN 274 (450)
T ss_dssp ETTTCCE
T ss_pred ECCCCcE
Confidence 9887764
No 90
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.03 E-value=2.3 Score=44.63 Aligned_cols=137 Identities=10% Similarity=0.045 Sum_probs=70.6
Q ss_pred eEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCc
Q 006473 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (643)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (643)
.+.+||+.+..-...-. .....-.++.+++..++.|+.+ ..+.+||+.+.+-...-.. ..
T Consensus 260 ~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~-------~~ 319 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQ----GHTNRVYSLQFDGIHVVSGSLD---------TSIRVWDVETGNCIHTLTG-------HQ 319 (445)
T ss_dssp CEEEEEGGGTEEEEEEC----CCSSCEEEEEECSSEEEEEETT---------SCEEEEETTTCCEEEEECC-------CC
T ss_pred EEEEEECCCCcEeEEec----CCCCceEEEEECCCEEEEEeCC---------CeEEEEECCCCCEEEEEcC-------Cc
Confidence 46677776654322111 1111222333466666677642 4588899877653222111 11
Q ss_pred cceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecccc
Q 006473 237 SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVV 316 (643)
Q Consensus 237 ~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~ 316 (643)
.....+...+.+++.|+.++. +.+||+.+..-...-.. +........++..++.+++.|+..
T Consensus 320 ~~v~~~~~~~~~l~~~~~dg~----------------i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~d 381 (445)
T 2ovr_B 320 SLTSGMELKDNILVSGNADST----------------VKIWDIKTGQCLQTLQG--PNKHQSAVTCLQFNKNFVITSSDD 381 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSC----------------EEEEETTTCCEEEEECS--TTSCSSCEEEEEECSSEEEEEETT
T ss_pred ccEEEEEEeCCEEEEEeCCCe----------------EEEEECCCCcEEEEEcc--CCCCCCCEEEEEECCCEEEEEeCC
Confidence 111222234556777776655 77888866543322111 011122233344467777777753
Q ss_pred ccccCccccccccCCcEEEEECCCCcEEE
Q 006473 317 DMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (643)
Q Consensus 317 ~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (643)
+.|.+||+.+.+...
T Consensus 382 --------------g~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 382 --------------GTVKLWDLKTGEFIR 396 (445)
T ss_dssp --------------SEEEEEETTTCCEEE
T ss_pred --------------CeEEEEECCCCceee
Confidence 359999999876543
No 91
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.78 Score=47.19 Aligned_cols=132 Identities=5% Similarity=-0.053 Sum_probs=66.1
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
..+.+||+.+..-...-. .....-.+++.. ++.+++.|+.+ ..+.+||+.+......-.. .
T Consensus 227 g~i~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~------~ 288 (425)
T 1r5m_A 227 GAIFVYQITEKTPTGKLI---GHHGPISVLEFNDTNKLLLSASDD---------GTLRIWHGGNGNSQNCFYG------H 288 (425)
T ss_dssp GCEEEEETTCSSCSEEEC---CCSSCEEEEEEETTTTEEEEEETT---------SCEEEECSSSBSCSEEECC------C
T ss_pred CeEEEEEcCCCceeeeec---cCCCceEEEEECCCCCEEEEEcCC---------CEEEEEECCCCccceEecC------C
Confidence 458889988754221111 111111223333 45566666632 3578888876543222111 1
Q ss_pred CccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEe
Q 006473 235 PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLF 312 (643)
Q Consensus 235 ~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvf 312 (643)
...-.+++.. ++ +++.|+.++. +.+||+.+.+-...... ....-.++++. ++.+++.
T Consensus 289 ~~~i~~~~~~~~~-~l~~~~~d~~----------------i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~ 347 (425)
T 1r5m_A 289 SQSIVSASWVGDD-KVISCSMDGS----------------VRLWSLKQNTLLALSIV----DGVPIFAGRISQDGQKYAV 347 (425)
T ss_dssp SSCEEEEEEETTT-EEEEEETTSE----------------EEEEETTTTEEEEEEEC----TTCCEEEEEECTTSSEEEE
T ss_pred CccEEEEEECCCC-EEEEEeCCCc----------------EEEEECCCCcEeEeccc----CCccEEEEEEcCCCCEEEE
Confidence 1122233334 44 7777776544 78889877654333221 11122233333 5677777
Q ss_pred ccccccccCccccccccCCcEEEEECCC
Q 006473 313 GGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
|+.. +.|.+||+.+
T Consensus 348 ~~~d--------------g~i~i~~~~~ 361 (425)
T 1r5m_A 348 AFMD--------------GQVNVYDLKK 361 (425)
T ss_dssp EETT--------------SCEEEEECHH
T ss_pred EECC--------------CeEEEEECCC
Confidence 7643 3588888764
No 92
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=94.94 E-value=0.87 Score=46.84 Aligned_cols=184 Identities=10% Similarity=0.020 Sum_probs=90.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE---CCEEEEEeCccCCCCCCcceecCe
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~---~~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
++.+++.|+. -+.+.+||+.+++-...-... .....++.+ +..+++.|+.. ..
T Consensus 138 dg~~l~sgs~---------d~~i~iwd~~~~~~~~~~~~h----~~~V~~~~~~~~~~~~l~s~s~D-----------~~ 193 (344)
T 4gqb_B 138 SGTQAVSGSK---------DICIKVWDLAQQVVLSSYRAH----AAQVTCVAASPHKDSVFLSCSED-----------NR 193 (344)
T ss_dssp TSSEEEEEET---------TSCEEEEETTTTEEEEEECCC----SSCEEEEEECSSCTTEEEEEETT-----------SC
T ss_pred CCCEEEEEeC---------CCeEEEEECCCCcEEEEEcCc----CCceEEEEecCCCCCceeeeccc-----------cc
Confidence 5566666662 135788888877543321111 111122222 34577777653 34
Q ss_pred EEEEECCCCcEEEeccCCCCCCCceeEEEEE---CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 158 v~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~---~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
+.+||+.+.+-...-. .........++.+ ++.+++.|+.+ ..|.+||+.+.+- +.... ..
T Consensus 194 v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~l~sg~~d---------g~v~~wd~~~~~~--~~~~~----~h 256 (344)
T 4gqb_B 194 ILLWDTRCPKPASQIG--CSAPGYLPTSLAWHPQQSEVFVFGDEN---------GTVSLVDTKSTSC--VLSSA----VH 256 (344)
T ss_dssp EEEEETTSSSCEEECC------CCCEEEEEECSSCTTEEEEEETT---------SEEEEEESCC--C--CEEEE----CC
T ss_pred cccccccccceeeeee--cceeeccceeeeecCCCCcceEEeccC---------CcEEEEECCCCcE--EEEEc----CC
Confidence 7788988776433211 1111111122333 45677777642 3577888876532 11110 01
Q ss_pred CccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--CCeEE
Q 006473 235 PRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRAL 310 (643)
Q Consensus 235 ~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~--~~~iy 310 (643)
...-.+++.. +..+++.|+.++. +.+||..+.+-..+. +. ...-.++++. +..++
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~----------------i~vwd~~~~~~~~~~--~H---~~~V~~v~~sp~~~~ll 315 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCS----------------LAVLDSSLSELFRSQ--AH---RDFVRDATWSPLNHSLL 315 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSC----------------EEEECTTCCEEEEEC--CC---SSCEEEEEECSSSTTEE
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCe----------------EEEEECCCCcEEEEc--CC---CCCEEEEEEeCCCCeEE
Confidence 1111222222 3456777777655 778888776543332 11 1122334443 34577
Q ss_pred EeccccccccCccccccccCCcEEEEECCC
Q 006473 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 311 vfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
+.||.+. .|.+|++.+
T Consensus 316 as~s~D~--------------~v~~w~v~~ 331 (344)
T 4gqb_B 316 TTVGWDH--------------QVVHHVVPT 331 (344)
T ss_dssp EEEETTS--------------CEEEEECCC
T ss_pred EEEcCCC--------------eEEEEECCC
Confidence 6777542 477777765
No 93
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=94.90 E-value=3.2 Score=42.80 Aligned_cols=104 Identities=12% Similarity=-0.053 Sum_probs=55.7
Q ss_pred CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCE-EEEEcCCCCCCCCccCCCC
Q 006473 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSE 266 (643)
Q Consensus 189 ~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~-iyv~GG~~~~~~~~~~~~~ 266 (643)
++.+++.|+.+ ..+.+||+.+..-...... .....-.+++.. ++. +++.|+.++.
T Consensus 258 ~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~g~~dg~--------- 314 (420)
T 3vl1_A 258 YGKYVIAGHVS---------GVITVHNVFSKEQTIQLPS-----KFTCSCNSLTVDGNNANYIYAGYENGM--------- 314 (420)
T ss_dssp TTEEEEEEETT---------SCEEEEETTTCCEEEEECC-----TTSSCEEEEEECSSCTTEEEEEETTSE---------
T ss_pred CCCEEEEEcCC---------CeEEEEECCCCceeEEccc-----ccCCCceeEEEeCCCCCEEEEEeCCCe---------
Confidence 45666666642 3588899877653222211 111112223333 344 7777776654
Q ss_pred CCceeeeEEEEeCCCCe--eEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 267 KGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 267 ~~~~~~dv~~yd~~t~~--W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
+.+||+.+.. -..+... ....-.+++..++.+++.||.. ..|.+|++.+
T Consensus 315 -------i~vwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~s~~~d--------------~~v~iw~~~~ 365 (420)
T 3vl1_A 315 -------LAQWDLRSPECPVGEFLIN----EGTPINNVYFAAGALFVSSGFD--------------TSIKLDIISD 365 (420)
T ss_dssp -------EEEEETTCTTSCSEEEEES----TTSCEEEEEEETTEEEEEETTT--------------EEEEEEEECC
T ss_pred -------EEEEEcCCCcCchhhhhcc----CCCCceEEEeCCCCEEEEecCC--------------ccEEEEeccC
Confidence 7888887643 2233221 1112233445578888888754 3478888765
No 94
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.89 E-value=0.88 Score=45.45 Aligned_cols=109 Identities=4% Similarity=-0.104 Sum_probs=61.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
.+.+|+.++. .+.|.+||+.+++........ .....++.. +..||+.+.. -..+
T Consensus 9 ~~~~~v~~~~---------~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~-----------~~~i 64 (331)
T 3u4y_A 9 SNFGIVVEQH---------LRRISFFSTDTLEILNQITLG----YDFVDTAITSDCSNVVVTSDF-----------CQTL 64 (331)
T ss_dssp CCEEEEEEGG---------GTEEEEEETTTCCEEEEEECC----CCEEEEEECSSSCEEEEEEST-----------TCEE
T ss_pred CCEEEEEecC---------CCeEEEEeCcccceeeeEEcc----CCcceEEEcCCCCEEEEEeCC-----------CCeE
Confidence 5778887762 358899999999886543321 111222222 4457777652 2478
Q ss_pred EEEECCCCcE-E-EeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEe
Q 006473 159 WMLDLKTNQW-E-QLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 159 ~~yD~~t~~W-~-~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (643)
++||+.+... . .+.. ...++ +++++. +++|| .+...+ . ...+++||+.+.+....
T Consensus 65 ~~~d~~~~~~~~~~~~~--~~~~~--~~~~~s~dg~~l~-~~~~~~-~-----~~~i~v~d~~~~~~~~~ 123 (331)
T 3u4y_A 65 VQIETQLEPPKVVAIQE--GQSSM--ADVDITPDDQFAV-TVTGLN-H-----PFNMQSYSFLKNKFIST 123 (331)
T ss_dssp EEEECSSSSCEEEEEEE--CSSCC--CCEEECTTSSEEE-ECCCSS-S-----SCEEEEEETTTTEEEEE
T ss_pred EEEECCCCceeEEeccc--CCCCc--cceEECCCCCEEE-EecCCC-C-----cccEEEEECCCCCeEEE
Confidence 9999988874 2 2222 12222 213333 44666 332110 0 12799999988765443
No 95
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.78 E-value=1.6 Score=48.97 Aligned_cols=121 Identities=10% Similarity=0.083 Sum_probs=65.6
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEEC-CCC--cEEEecCCCC---CCCce---eeEEEE--ECCE----EEEEeCccC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDV-EKQ--EWKVISSPNS---PPPRS---AHQAVS--WKNY----LYIFGGEFT 145 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~-~~~--~W~~l~s~~~---P~pRs---~ha~~~--~~~~----iyvfGG~~~ 145 (643)
++.||+.+.. .+.|+++|. .++ .|+.-..... |.+++ ....++ .++. ||+...
T Consensus 62 ~g~vyv~~~~---------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~--- 129 (599)
T 1w6s_A 62 DGKMYIHTSF---------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL--- 129 (599)
T ss_dssp TTEEEEECST---------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT---
T ss_pred CCEEEEEeCC---------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC---
Confidence 7888887651 247999999 666 4886433210 00111 122334 4565 777532
Q ss_pred CCCCCcceecCeEEEEECCCCc--EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--e
Q 006473 146 SPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--W 221 (643)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W 221 (643)
-..++.+|..|++ |+.-.....+......+-++.++.||+-.+... ......|+.||..+.+ |
T Consensus 130 ---------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e----~g~~g~v~A~D~~TG~~~W 196 (599)
T 1w6s_A 130 ---------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAE----LGVRGYLTAYDVKTGEQVW 196 (599)
T ss_dssp ---------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGG----GTCCCEEEEEETTTCCEEE
T ss_pred ---------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccc----cCCCCeEEEEECCCCcEEE
Confidence 1468899998875 875432100000111223456888776432111 0123578999998765 8
Q ss_pred EEecc
Q 006473 222 QEIKP 226 (643)
Q Consensus 222 ~~v~~ 226 (643)
+.-..
T Consensus 197 ~~~~~ 201 (599)
T 1w6s_A 197 RAYAT 201 (599)
T ss_dssp EEESS
T ss_pred EEcCC
Confidence 76543
No 96
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=94.74 E-value=3 Score=42.32 Aligned_cols=62 Identities=5% Similarity=0.029 Sum_probs=30.9
Q ss_pred EEEEeCCCCeeEEeccCCCCCCCcee-eEEEEE-CCe-EEEeccccccccCccccccccCCcEEEEEC--CCCcEEEeEe
Q 006473 274 LWSLDPRTWEWSKVKKIGMPPGPRAG-FSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQL--DNHRWYPLEL 348 (643)
Q Consensus 274 v~~yd~~t~~W~~l~~~g~~P~~R~g-~s~~~~-~~~-iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~--~t~~W~~l~~ 348 (643)
+.+|++.+..+..+......|....+ ..+++. +++ ||+.... . .+.|.+|++ .+.++..+..
T Consensus 235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-~------------~~~i~v~~~~~~~g~~~~~~~ 301 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-K------------ADGVAIFKVDETNGTLTKVGY 301 (361)
T ss_dssp EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-S------------SCEEEEEEECTTTCCEEEEEE
T ss_pred EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-C------------CCEEEEEEEcCCCCcEEEeeE
Confidence 67777767776655433222322222 233333 454 5443321 0 244677766 4667766654
No 97
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=94.66 E-value=1.8 Score=41.71 Aligned_cols=191 Identities=7% Similarity=0.007 Sum_probs=98.6
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~ 150 (643)
+.+++.+ ++.||+... .+.+++||+.......+.... ...-+.++.. ++.||+....
T Consensus 70 ~~i~~~~--~g~l~v~~~----------~~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~~------- 127 (270)
T 1rwi_B 70 QGLAVDG--AGTVYVTDF----------NNRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQGAVYVADRG------- 127 (270)
T ss_dssp CCEEECT--TCCEEEEET----------TTEEEEECTTCSCCEECCCCS---CSSEEEEEECTTCCEEEEEGG-------
T ss_pred ceeEECC--CCCEEEEcC----------CCEEEEEeCCCceEeeeecCC---cCCCcceEECCCCCEEEEECC-------
Confidence 4455554 456776543 136888998877655443221 1122334443 5678887542
Q ss_pred cceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC
Q 006473 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (643)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (643)
...+++|+..+.........+. ..-+++++. +++||+.... .+.|++||+....-......
T Consensus 128 ----~~~i~~~~~~~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~~~~~~~~~~~-- 189 (270)
T 1rwi_B 128 ----NNRVVKLAAGSKTQTVLPFTGL---NDPDGVAVDNSGNVYVTDTD---------NNRVVKLEAESNNQVVLPFT-- 189 (270)
T ss_dssp ----GTEEEEECTTCCSCEECCCCSC---CSCCCEEECTTCCEEEEEGG---------GTEEEEECTTTCCEEECCCS--
T ss_pred ----CCEEEEEECCCceeEeeccccC---CCceeEEEeCCCCEEEEECC---------CCEEEEEecCCCceEeeccc--
Confidence 2457888776655443322111 112234443 5678876432 35688999877653332211
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CC
Q 006473 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~ 307 (643)
.. ..-.+++.. ++.||+....... +++|++.+..-...... ....-.++++. ++
T Consensus 190 ---~~-~~p~~i~~d~~g~l~v~~~~~~~----------------v~~~~~~~~~~~~~~~~----~~~~p~~i~~~~~g 245 (270)
T 1rwi_B 190 ---DI-TAPWGIAVDEAGTVYVTEHNTNQ----------------VVKLLAGSTTSTVLPFT----GLNTPLAVAVDSDR 245 (270)
T ss_dssp ---SC-CSEEEEEECTTCCEEEEETTTSC----------------EEEECTTCSCCEECCCC----SCSCEEEEEECTTC
T ss_pred ---CC-CCceEEEECCCCCEEEEECCCCc----------------EEEEcCCCCcceeeccC----CCCCceeEEECCCC
Confidence 11 112234443 5578877644332 78888876543332211 11222344443 46
Q ss_pred eEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
+||+..... +.|.+|++..
T Consensus 246 ~l~v~~~~~--------------~~v~~~~~~~ 264 (270)
T 1rwi_B 246 TVYVADRGN--------------DRVVKLTSLE 264 (270)
T ss_dssp CEEEEEGGG--------------TEEEEECCCG
T ss_pred CEEEEECCC--------------CEEEEEcCCC
Confidence 788775532 4577777653
No 98
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=94.62 E-value=4.1 Score=42.71 Aligned_cols=153 Identities=11% Similarity=0.041 Sum_probs=76.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~ 213 (643)
++..++.|+.. ..+.+||+.+.+-...-. .. .....+..+.+.+++.|+.+ ..+.+
T Consensus 288 ~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~--~~--~~~v~~~~~~~~~l~~~~~d---------g~i~v 343 (445)
T 2ovr_B 288 DGIHVVSGSLD-----------TSIRVWDVETGNCIHTLT--GH--QSLTSGMELKDNILVSGNAD---------STVKI 343 (445)
T ss_dssp CSSEEEEEETT-----------SCEEEEETTTCCEEEEEC--CC--CSCEEEEEEETTEEEEEETT---------SCEEE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCCEEEEEc--CC--cccEEEEEEeCCEEEEEeCC---------CeEEE
Confidence 55555666542 357888887765432211 11 11122233344555666642 46888
Q ss_pred EEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEecc-CCC
Q 006473 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK-IGM 292 (643)
Q Consensus 214 yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~-~g~ 292 (643)
||+.+.+-...-..+ .........+.+++.+++.|+.++. +.+||+.+.+....-. ...
T Consensus 344 wd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~l~s~~~dg~----------------v~iwd~~~~~~~~~~~~~~~ 403 (445)
T 2ovr_B 344 WDIKTGQCLQTLQGP----NKHQSAVTCLQFNKNFVITSSDDGT----------------VKLWDLKTGEFIRNLVTLES 403 (445)
T ss_dssp EETTTCCEEEEECST----TSCSSCEEEEEECSSEEEEEETTSE----------------EEEEETTTCCEEEEEEECTT
T ss_pred EECCCCcEEEEEccC----CCCCCCEEEEEECCCEEEEEeCCCe----------------EEEEECCCCceeeeeecccc
Confidence 998776532221110 0111112233346677788877654 7888988776544321 100
Q ss_pred CCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 293 PPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 293 ~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
.+..-.-.++++. ++.++++|+.++. .-..|++||...
T Consensus 404 ~~~~~~v~~~~~s~~~~~la~~~~dg~----------~~~~l~v~df~~ 442 (445)
T 2ovr_B 404 GGSGGVVWRIRASNTKLVCAVGSRNGT----------EETKLLVLDFDV 442 (445)
T ss_dssp GGGTCEEEEEEECSSEEEEEEECSSSS----------SCCEEEEEECCC
T ss_pred CCCCceEEEEEecCCEEEEEEcccCCC----------CccEEEEEECCC
Confidence 0111122333444 4556667765431 134588888765
No 99
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=94.61 E-value=0.98 Score=48.76 Aligned_cols=59 Identities=19% Similarity=0.400 Sum_probs=41.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
++++|+|-| +..|+||..++......-+..| . --++....+.+|+|-| +..|+
T Consensus 158 ~~~~yfFkG-----------~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG-------------~~y~r 210 (460)
T 1qhu_A 158 DEGILFFQG-----------NRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQG-------------NQFLR 210 (460)
T ss_dssp SSEEEEEET-----------TEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEET-------------TEEEE
T ss_pred CCeEEEEec-----------ccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEEC-------------CEEEE
Confidence 577888888 3679999998876643333333 3 3455556899999988 46788
Q ss_pred EECCCC
Q 006473 161 LDLKTN 166 (643)
Q Consensus 161 yD~~t~ 166 (643)
||..+.
T Consensus 211 fd~~~~ 216 (460)
T 1qhu_A 211 FNPVSG 216 (460)
T ss_dssp ECTTTC
T ss_pred EcCccC
Confidence 887654
No 100
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.57 E-value=4.6 Score=42.36 Aligned_cols=173 Identities=11% Similarity=0.073 Sum_probs=89.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++.+++.|+. -+.+.+||+.+.+-...-... ...-.+++.. ++..++.|+.. ..+.
T Consensus 279 ~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~~d-----------g~i~ 335 (464)
T 3v7d_B 279 HGNIVVSGSY---------DNTLIVWDVAQMKCLYILSGH---TDRIYSTIYDHERKRCISASMD-----------TTIR 335 (464)
T ss_dssp ETTEEEEEET---------TSCEEEEETTTTEEEEEECCC---SSCEEEEEEETTTTEEEEEETT-----------SCEE
T ss_pred CCCEEEEEeC---------CCeEEEEECCCCcEEEEecCC---CCCEEEEEEcCCCCEEEEEeCC-----------CcEE
Confidence 3556666762 246889999877644332211 1112223332 45566666642 3588
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccce
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF 239 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~ 239 (643)
+||+.+.+-...-. .....-.++.+.+..++.|+.+ ..+.+||+.+..-...... ......
T Consensus 336 vwd~~~~~~~~~~~----~h~~~v~~~~~~~~~l~s~s~d---------g~v~vwd~~~~~~~~~~~~------~~~~~~ 396 (464)
T 3v7d_B 336 IWDLENGELMYTLQ----GHTALVGLLRLSDKFLVSAAAD---------GSIRGWDANDYSRKFSYHH------TNLSAI 396 (464)
T ss_dssp EEETTTTEEEEEEC----CCSSCEEEEEECSSEEEEEETT---------SEEEEEETTTCCEEEEEEC------TTCCCE
T ss_pred EEECCCCcEEEEEe----CCCCcEEEEEEcCCEEEEEeCC---------CcEEEEECCCCceeeeecC------CCCccE
Confidence 89998765432211 1112223444566666666642 3588889887553222211 111222
Q ss_pred eEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccc
Q 006473 240 QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (643)
Q Consensus 240 s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~ 315 (643)
.+...++.+++.|+ ++. +.+||+.+.+-...... +....-.+++..++.+++.|+.
T Consensus 397 ~~~~~~~~~l~~~~-dg~----------------i~iwd~~~g~~~~~~~~---~~~~~v~~v~~~~~~l~~~~~~ 452 (464)
T 3v7d_B 397 TTFYVSDNILVSGS-ENQ----------------FNIYNLRSGKLVHANIL---KDADQIWSVNFKGKTLVAAVEK 452 (464)
T ss_dssp EEEEECSSEEEEEE-TTE----------------EEEEETTTCCEEESCTT---TTCSEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCEEEEec-CCe----------------EEEEECCCCcEEehhhc---cCCCcEEEEEecCCEEEEEEEe
Confidence 23333666666666 433 78899888765443221 1222233445556666666554
No 101
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=94.56 E-value=2.2 Score=42.40 Aligned_cols=185 Identities=11% Similarity=0.064 Sum_probs=92.4
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCe
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
.+++++.|.. -+.++.+|+.+++ |+.-.. .....|.+... ++.||+.+. +.
T Consensus 4 ~~~~lv~~~~---------~~~v~~~d~~tG~~~w~~~~~----~~~~~~~~~~~pdG~ilvs~~-------------~~ 57 (276)
T 3no2_A 4 PQHLLVGGSG---------WNKIAIINKDTKEIVWEYPLE----KGWECNSVAATKAGEILFSYS-------------KG 57 (276)
T ss_dssp CCEEEEECTT---------CSEEEEEETTTTEEEEEEECC----TTCCCCEEEECTTSCEEEECB-------------SE
T ss_pred CCcEEEeeCC---------CCEEEEEECCCCeEEEEeCCC----ccCCCcCeEECCCCCEEEeCC-------------CC
Confidence 3677777762 2578899987774 664322 11122333333 777777321 45
Q ss_pred EEEEECCCC--cEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCC-ceEEeccCCCCCCC
Q 006473 158 FWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIKPRFGSMWP 233 (643)
Q Consensus 158 v~~yD~~t~--~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~-~W~~v~~~~~~~~P 233 (643)
++.||+ ++ .|+.-. +....-+++... ++.+++..+. . ...++.+|+... .|+..... ....+
T Consensus 58 V~~~d~-~G~~~W~~~~----~~~~~~~~~~~~~dG~~lv~~~~-~-------~~~v~~vd~~Gk~l~~~~~~~-~~~~~ 123 (276)
T 3no2_A 58 AKMITR-DGRELWNIAA----PAGCEMQTARILPDGNALVAWCG-H-------PSTILEVNMKGEVLSKTEFET-GIERP 123 (276)
T ss_dssp EEEECT-TSCEEEEEEC----CTTCEEEEEEECTTSCEEEEEES-T-------TEEEEEECTTSCEEEEEEECC-SCSSG
T ss_pred EEEECC-CCCEEEEEcC----CCCccccccEECCCCCEEEEecC-C-------CCEEEEEeCCCCEEEEEeccC-CCCcc
Confidence 888998 44 366432 211222334443 5555554331 0 135777887433 24432211 00001
Q ss_pred CCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC-CeeEEeccCCCCCCCceeeEEEEE-CCeEEE
Q 006473 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (643)
Q Consensus 234 ~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyv 311 (643)
...........++.+++.....+ .+.+||+.. ..|+.-.. ..| +++++. ++.+||
T Consensus 124 ~~~~~~v~~~~~G~~lv~~~~~~----------------~v~~~d~~G~~~w~~~~~--~~~-----~~~~~~~~g~~~v 180 (276)
T 3no2_A 124 HAQFRQINKNKKGNYLVPLFATS----------------EVREIAPNGQLLNSVKLS--GTP-----FSSAFLDNGDCLV 180 (276)
T ss_dssp GGSCSCCEECTTSCEEEEETTTT----------------EEEEECTTSCEEEEEECS--SCC-----CEEEECTTSCEEE
T ss_pred cccccCceECCCCCEEEEecCCC----------------EEEEECCCCCEEEEEECC--CCc-----cceeEcCCCCEEE
Confidence 11111112223555665544332 378888863 35665432 111 233344 678888
Q ss_pred eccccccccCccccccccCCcEEEEECCCCc
Q 006473 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
++... +.|+.||+.+.+
T Consensus 181 ~~~~~--------------~~v~~~d~~tG~ 197 (276)
T 3no2_A 181 ACGDA--------------HCFVQLNLESNR 197 (276)
T ss_dssp ECBTT--------------SEEEEECTTTCC
T ss_pred EeCCC--------------CeEEEEeCcCCc
Confidence 76532 359999999764
No 102
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.54 E-value=0.84 Score=46.20 Aligned_cols=61 Identities=11% Similarity=-0.026 Sum_probs=34.5
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEecc
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (643)
.+|.+|..++++..+.... ....-..++.. +++||+.+.... -..+++|++.+..++.+..
T Consensus 19 ~v~~~d~~tg~~~~~~~~~--~~~~p~~~a~spdg~l~~~~~~~~---------~~~v~~~~~~~g~~~~~~~ 80 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLA--ATQNPTYLALSAKDCLYSVDKEDD---------EGGIAAWQIDGQTAHKLNT 80 (347)
T ss_dssp EEEEEETTTTEEEEEEEEE--ECSCCCCEEECTTCEEEEEEEETT---------EEEEEEEEEETTEEEEEEE
T ss_pred EEEEEcCCCCeEEEeeeee--ccCCcceEEEccCCeEEEEEecCC---------CceEEEEEecCCcEEEeee
Confidence 4788888888887653211 01111122222 567777653211 2568899988888776643
No 103
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.53 E-value=1.3 Score=50.61 Aligned_cols=194 Identities=11% Similarity=-0.006 Sum_probs=95.8
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
++...| ++.++++||. .+.+.+||..+++....-... ...-.+++.. ++..++.|+..
T Consensus 60 ~~~~s~--~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d------- 118 (814)
T 3mkq_A 60 AGKFIA--RKNWIIVGSD---------DFRIRVFNYNTGEKVVDFEAH---PDYIRSIAVHPTKPYVLSGSDD------- 118 (814)
T ss_dssp EEEEEG--GGTEEEEEET---------TSEEEEEETTTCCEEEEEECC---SSCEEEEEECSSSSEEEEEETT-------
T ss_pred EEEEeC--CCCEEEEEeC---------CCeEEEEECCCCcEEEEEecC---CCCEEEEEEeCCCCEEEEEcCC-------
Confidence 344555 5667777772 246889999888765432211 1111222222 44455566532
Q ss_pred ceecCeEEEEECCCC-cEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC
Q 006473 152 FHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~-~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
..+.+||+.++ .....-. + . ...-.+++.. ++.+++.|+.+ ..+.+||+.+..-......
T Consensus 119 ----g~i~vw~~~~~~~~~~~~~-~-~-~~~v~~~~~~p~~~~~l~~~~~d---------g~v~vwd~~~~~~~~~~~~- 181 (814)
T 3mkq_A 119 ----LTVKLWNWENNWALEQTFE-G-H-EHFVMCVAFNPKDPSTFASGCLD---------RTVKVWSLGQSTPNFTLTT- 181 (814)
T ss_dssp ----SEEEEEEGGGTSEEEEEEE-C-C-SSCEEEEEEETTEEEEEEEEETT---------SEEEEEETTCSSCSEEEEC-
T ss_pred ----CEEEEEECCCCceEEEEEc-C-C-CCcEEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCcceeEEec-
Confidence 35778888765 3322211 1 1 1111222332 35677776642 4588888865442222111
Q ss_pred CCCCCCCccceeEEEe---CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE
Q 006473 229 GSMWPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~ 305 (643)
.......+++.. ++.+++.|+.++. +.+||+.+..-...-.. . ...-.++++.
T Consensus 182 ----~~~~~v~~~~~~~~~~~~~l~~~~~dg~----------------i~~~d~~~~~~~~~~~~---~-~~~v~~~~~~ 237 (814)
T 3mkq_A 182 ----GQERGVNYVDYYPLPDKPYMITASDDLT----------------IKIWDYQTKSCVATLEG---H-MSNVSFAVFH 237 (814)
T ss_dssp ----CCTTCCCEEEECCSTTCCEEEEECTTSE----------------EEEEETTTTEEEEEEEC---C-SSCEEEEEEC
T ss_pred ----CCCCCEEEEEEEECCCCCEEEEEeCCCE----------------EEEEECCCCcEEEEEcC---C-CCCEEEEEEc
Confidence 111111122222 5667777776554 77888776653322111 1 1112233333
Q ss_pred -CCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
++.+++.|+.. +.|.+||+.+.+
T Consensus 238 ~~~~~l~~~~~d--------------g~v~vwd~~~~~ 261 (814)
T 3mkq_A 238 PTLPIIISGSED--------------GTLKIWNSSTYK 261 (814)
T ss_dssp SSSSEEEEEETT--------------SCEEEEETTTCS
T ss_pred CCCCEEEEEeCC--------------CeEEEEECCCCc
Confidence 46677777653 347778877654
No 104
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.94 Score=45.87 Aligned_cols=195 Identities=12% Similarity=0.064 Sum_probs=88.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCC--CcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYK 156 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~--~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~ 156 (643)
++.+++.|+. + ..+.+||+.. ..+..+.... ........+.+ ++.+++.|+.. .
T Consensus 118 ~g~~las~s~--D-------~~v~iwd~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~D-----------~ 175 (330)
T 2hes_X 118 DGYYLATCSR--D-------KSVWIWETDESGEEYECISVLQ--EHSQDVKHVIWHPSEALLASSSYD-----------D 175 (330)
T ss_dssp TSCEEEEEET--T-------SCEEEEECCTTCCCCEEEEEEC--CCSSCEEEEEECSSSSEEEEEETT-----------S
T ss_pred CCCEEEEEeC--C-------CEEEEEeccCCCCCeEEEEEec--cCCCceEEEEECCCCCEEEEEcCC-----------C
Confidence 4566666662 2 3577888743 2344332111 01111222333 45667777653 2
Q ss_pred eEEEEECCCCcEEEeccCCCCCCCceeEEEEE-C--CEEEEEeeeecCCCceeeeccEEEEEcCC------CceEEeccC
Q 006473 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQ------FKWQEIKPR 227 (643)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~--~~lyvfGG~~~~~~~~~~~~dv~~yD~~t------~~W~~v~~~ 227 (643)
.+.++|..+..|..+.......... .++... + +.+++.|+.+ ..+.+||+.. ..|..+...
T Consensus 176 ~i~iW~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s~D---------~~v~iw~~~~~~~~~~~~~~~~~~~ 245 (330)
T 2hes_X 176 TVRIWKDYDDDWECVAVLNGHEGTV-WSSDFDKTEGVFRLCSGSDD---------STVRVWKYMGDDEDDQQEWVCEAIL 245 (330)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCE-EEEEECCSSSSCEEEEEETT---------SCEEEEEEEEECTTSCEEEEEEEEC
T ss_pred eEEEEECCCCCeeEEEEccCCCCcE-EEEEecCCCCeeEEEEEeCC---------CeEEEEEecCCCccccceeEEeeec
Confidence 4666777667676554311111111 112221 2 3455556543 2344454432 245554443
Q ss_pred CCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--
Q 006473 228 FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-- 305 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-- 305 (643)
+. .....-.+++...+.+++.||.++. +.+|+..+..|..+...........-.+++..
T Consensus 246 ~~---~h~~~v~~v~~s~~~~l~s~~~dg~----------------v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~ 306 (330)
T 2hes_X 246 PD---VHKRQVYNVAWGFNGLIASVGADGV----------------LAVYEEVDGEWKVFAKRALCHGVYEINVVKWLEL 306 (330)
T ss_dssp CS---CCSSCEEEEEECTTSCEEEEETTSC----------------EEEEEEETTEEEEEEEESCTTTTSCEEEEEEC--
T ss_pred cc---ccccceEEEEEcCCCEEEEEeCCCE----------------EEEEEcCCCceEEEeccccccccceEEEEEEecC
Confidence 11 1122222333334557777777655 66777777778665332110111012223332
Q ss_pred -CCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
++.+++.||.+ ..|.+||+.+
T Consensus 307 ~~~~~las~s~D--------------g~v~~W~~~~ 328 (330)
T 2hes_X 307 NGKTILATGGDD--------------GIVNFWSLEK 328 (330)
T ss_dssp ---CCEEEEETT--------------SEEEEEEC--
T ss_pred CCceEEEEecCC--------------CcEEEEEecc
Confidence 46777788754 2477777653
No 105
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=94.49 E-value=0.77 Score=45.79 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=28.9
Q ss_pred ccEEEEECC-CCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECC--CCcEEEecc
Q 006473 101 GDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLK--TNQWEQLNL 173 (643)
Q Consensus 101 ndv~~yd~~-~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~--t~~W~~~~~ 173 (643)
+.+++|++. ++++..+.... ....-+.++.. +..||+.+... ..+.+|++. ++.+..+..
T Consensus 15 ~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 15 QQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPE-----------FRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTT-----------TEEEEEEECTTTCCEEEEEE
T ss_pred CeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCCEEEEeecCC-----------CeEEEEEecCCCCceeeccc
Confidence 467788774 44555442211 11112223332 44566655421 345565554 777776544
No 106
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=94.47 E-value=6.4 Score=44.45 Aligned_cols=199 Identities=11% Similarity=0.007 Sum_probs=100.5
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCc-eeeEEEEECCEEEEEeCccCCC-CCCcceecCeEEEEECCCCcE--EEeccCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPR-SAHQAVSWKNYLYIFGGEFTSP-NQERFHHYKDFWMLDLKTNQW--EQLNLKGC 176 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pR-s~ha~~~~~~~iyvfGG~~~~~-~~~~~~~~~dv~~yD~~t~~W--~~~~~~g~ 176 (643)
..|+++|+.+++...... +..+ .+.++. -+..||...-..... ..........||++++.+..= ..+.. .
T Consensus 155 ~~i~v~dl~tg~~~~~~~---~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~--~ 228 (693)
T 3iuj_A 155 REIHLMDVESKQPLETPL---KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG--A 228 (693)
T ss_dssp EEEEEEETTTCSEEEEEE---EEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEES--C
T ss_pred EEEEEEECCCCCCCcccc---CCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEe--c
Confidence 478999999998765532 1111 223333 334455443221100 000001235789999877653 12211 1
Q ss_pred CC--CCceeEEEE-ECC-EEEEEeeeecCCCceeeeccEEEEEcCCC--ceEEeccCCCCCCCCCccceeEEEeCCEEEE
Q 006473 177 PS--PRSGHRMVL-YKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFL 250 (643)
Q Consensus 177 P~--~Rs~h~~~~-~~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv 250 (643)
+. +........ -++ +|++.... .. ..+.+|++|+.+. .|..+... ...... .+...++.||+
T Consensus 229 ~~~~~~~~~~~~~SpDg~~l~~~~~~-~~-----~~~~i~~~d~~~~~~~~~~l~~~-----~~~~~~-~~~~~g~~l~~ 296 (693)
T 3iuj_A 229 IPAQHHRYVGATVTEDDRFLLISAAN-ST-----SGNRLYVKDLSQENAPLLTVQGD-----LDADVS-LVDNKGSTLYL 296 (693)
T ss_dssp SGGGCCSEEEEEECTTSCEEEEEEES-SS-----SCCEEEEEETTSTTCCCEEEECS-----SSSCEE-EEEEETTEEEE
T ss_pred CCCCCeEEEEEEEcCCCCEEEEEEcc-CC-----CCcEEEEEECCCCCCceEEEeCC-----CCceEE-EEeccCCEEEE
Confidence 21 222222222 244 44443322 11 1368999998765 68777654 122211 13445889998
Q ss_pred EcCCCCCCCCccCCCCCCceeeeEEEEeCCCC---eeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCcccccc
Q 006473 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW---EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMS 327 (643)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~---~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~ 327 (643)
....... ...++.+++.+. .|+.+.+.. + ... +....++.|++..-...
T Consensus 297 ~t~~~~~-------------~~~l~~~d~~~~~~~~~~~l~~~~--~--~~~-~~s~~g~~lv~~~~~~g---------- 348 (693)
T 3iuj_A 297 LTNRDAP-------------NRRLVTVDAANPGPAHWRDLIPER--Q--QVL-TVHSGSGYLFAEYMVDA---------- 348 (693)
T ss_dssp EECTTCT-------------TCEEEEEETTSCCGGGCEEEECCC--S--SCE-EEEEETTEEEEEEEETT----------
T ss_pred EECCCCC-------------CCEEEEEeCCCCCccccEEEecCC--C--CEE-EEEEECCEEEEEEEECC----------
Confidence 8764321 245888887653 488775421 1 122 55555676665543221
Q ss_pred ccCCcEEEEECCCCcEEEeE
Q 006473 328 LFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 328 ~~~ndl~~yd~~t~~W~~l~ 347 (643)
...|+++++.+.....+.
T Consensus 349 --~~~l~~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 349 --TARVEQFDYEGKRVREVA 366 (693)
T ss_dssp --EEEEEEECTTSCEEEEEC
T ss_pred --eeEEEEEECCCCeeEEee
Confidence 346888888765444443
No 107
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.38 E-value=0.88 Score=47.74 Aligned_cols=51 Identities=10% Similarity=-0.041 Sum_probs=27.4
Q ss_pred EEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--CCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 274 v~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
+.+||+.+..-...... .....+++.. ++.+++.+|..+ +.|.+||+.+.+
T Consensus 303 I~iwd~~t~~~~~~~~~-----~~~v~~~~~~~~~~~lv~~sg~~d-------------~~I~iwd~~~~~ 355 (420)
T 4gga_A 303 IRIWNVCSGACLSAVDA-----HSQVCSILWSPHYKELISGHGFAQ-------------NQLVIWKYPTMA 355 (420)
T ss_dssp EEEEETTTTEEEEEEEC-----SSCEEEEEEETTTTEEEEEECTTT-------------CCEEEEETTTCC
T ss_pred EEEEeCCccccceeecc-----ccceeeeeecCCCCeEEEEEecCC-------------CEEEEEECCCCc
Confidence 67888877654443321 1112233333 345555555432 458999987643
No 108
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=94.37 E-value=3.3 Score=41.65 Aligned_cols=175 Identities=9% Similarity=0.033 Sum_probs=89.5
Q ss_pred ccEEEEECCCCcEEE-ecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~-l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
..+..||+.+.+-.. +.... . ...+++.. ++.+++.|+.. ..+.+||+.+..-...-. ..
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~--~--~~~~~~~spdg~~l~~g~~d-----------g~v~i~~~~~~~~~~~~~---~~ 163 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGP--V--DAWTLAFSPDSQYLATGTHV-----------GKVNIFGVESGKKEYSLD---TR 163 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCT--T--CCCCEEECTTSSEEEEECTT-----------SEEEEEETTTCSEEEEEE---CS
T ss_pred CcEEEEECCCCCEEEEEeCCC--c--cEEEEEECCCCCEEEEEcCC-----------CcEEEEEcCCCceeEEec---CC
Confidence 467788888775432 22211 1 11122222 55666777642 457788887765332211 11
Q ss_pred CCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCC
Q 006473 179 PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (643)
Q Consensus 179 ~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~ 256 (643)
...-.+++.. ++.+++.|+.+ ..+.+||+.+.+-.. ..... ..+. .+++.. ++.+++.|+.++
T Consensus 164 ~~~v~~~~~spdg~~lasg~~d---------g~i~iwd~~~~~~~~--~~~~h--~~~v--~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 164 GKFILSIAYSPDGKYLASGAID---------GIINIFDIATGKLLH--TLEGH--AMPI--RSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEE--EECCC--SSCC--CEEEECTTSCEEEEECTTS
T ss_pred CceEEEEEECCCCCEEEEEcCC---------CeEEEEECCCCcEEE--EEccc--CCce--eEEEEcCCCCEEEEEcCCC
Confidence 1111222222 55666777643 458889988765322 22110 1111 122232 677888888776
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEE
Q 006473 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (643)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~ 335 (643)
. +.+||+.+......-. + ....-.++++. ++..++.|+.. ..|.+
T Consensus 229 ~----------------i~iwd~~~~~~~~~~~-~---h~~~v~~~~~sp~~~~l~s~s~D--------------~~v~i 274 (321)
T 3ow8_A 229 Y----------------IKIYDVQHANLAGTLS-G---HASWVLNVAFCPDDTHFVSSSSD--------------KSVKV 274 (321)
T ss_dssp C----------------EEEEETTTCCEEEEEC-C---CSSCEEEEEECTTSSEEEEEETT--------------SCEEE
T ss_pred e----------------EEEEECCCcceeEEEc-C---CCCceEEEEECCCCCEEEEEeCC--------------CcEEE
Confidence 5 7788887655433211 1 11112233333 56677777653 34889
Q ss_pred EECCCCc
Q 006473 336 FQLDNHR 342 (643)
Q Consensus 336 yd~~t~~ 342 (643)
||+.+.+
T Consensus 275 wd~~~~~ 281 (321)
T 3ow8_A 275 WDVGTRT 281 (321)
T ss_dssp EETTTTE
T ss_pred EeCCCCE
Confidence 9987653
No 109
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=94.36 E-value=1.7 Score=47.81 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=73.9
Q ss_pred CeEEEEECCCCcEEEe-ccCCC--------CCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 156 KDFWMLDLKTNQWEQL-NLKGC--------PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~-~~~g~--------P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
+.+.++|..+.+-... ...++ |.+|..+..+.. +..+|+-... .+.|+++|..+..-..+.
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~---------~g~i~vvd~~~~~~l~~~ 318 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE---------TGKVLLVNYKDIDNLTVT 318 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT---------TTEEEEEECTTSSSCEEE
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC---------CCeEEEEEecCCCcceeE
Confidence 4677889887764332 22111 122322222222 3455544321 367889998765422222
Q ss_pred cCCCCCCCCCccceeEEEe-CC-EEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEE
Q 006473 226 PRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (643)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~ 303 (643)
.. +..+.-+.++.. ++ .+|+.+..+ +.+.++|+.+.+-...-..+..|.+..+...
T Consensus 319 ~i-----~~~~~~~~~~~spdg~~l~va~~~~----------------~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 319 SI-----GAAPFLHDGGWDSSHRYFMTAANNS----------------NKVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp EE-----ECCSSCCCEEECTTSCEEEEEEGGG----------------TEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred Ee-----ccCcCccCceECCCCCEEEEEecCC----------------CeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 22 112222233333 33 455543322 2477899988876554443444444334433
Q ss_pred EE--CCeEEEeccccccccCccccccccCCcEEEEECCCC-----cEEEeEe
Q 006473 304 VH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-----RWYPLEL 348 (643)
Q Consensus 304 ~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~-----~W~~l~~ 348 (643)
+. ++.+|+.+...+ +.|-+||+.+. .|..+..
T Consensus 377 ~~p~~g~~~~s~~~~d-------------~~V~v~d~~~~~~~~~~~~~v~~ 415 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGD-------------GSISLIGTDPKNHPQYAWKKVAE 415 (543)
T ss_dssp EETTTEEEEEEEBSSS-------------SEEEEEECCTTTCTTTBTSEEEE
T ss_pred CCCCCccEEEeccCCC-------------ceEEEEEeCCCCCchhcCeEEEE
Confidence 33 367777664322 45888888772 2665544
No 110
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.34 E-value=1.1 Score=51.16 Aligned_cols=151 Identities=9% Similarity=0.020 Sum_probs=77.8
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
++...| ++.++++|+. .+.+.+||..++.....-... +.+ -.+++.. ++..+++||..
T Consensus 18 ~i~~sp--~~~~la~~~~---------~g~v~iwd~~~~~~~~~~~~~-~~~--v~~~~~s~~~~~l~~~~~d------- 76 (814)
T 3mkq_A 18 GIDFHP--TEPWVLTTLY---------SGRVEIWNYETQVEVRSIQVT-ETP--VRAGKFIARKNWIIVGSDD------- 76 (814)
T ss_dssp EEEECS--SSSEEEEEET---------TSEEEEEETTTTEEEEEEECC-SSC--EEEEEEEGGGTEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEeC---------CCEEEEEECCCCceEEEEecC-CCc--EEEEEEeCCCCEEEEEeCC-------
Confidence 344555 5677777772 246889998887654332211 111 1222222 45566666642
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (643)
..+.+||..++.....-. ... ..-.++.+ ++..++.|+.+ ..+.+||+.+. |..+....
T Consensus 77 ----g~i~vw~~~~~~~~~~~~--~~~--~~v~~~~~s~~~~~l~~~~~d---------g~i~vw~~~~~-~~~~~~~~- 137 (814)
T 3mkq_A 77 ----FRIRVFNYNTGEKVVDFE--AHP--DYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENN-WALEQTFE- 137 (814)
T ss_dssp ----SEEEEEETTTCCEEEEEE--CCS--SCEEEEEECSSSSEEEEEETT---------SEEEEEEGGGT-SEEEEEEE-
T ss_pred ----CeEEEEECCCCcEEEEEe--cCC--CCEEEEEEeCCCCEEEEEcCC---------CEEEEEECCCC-ceEEEEEc-
Confidence 468889988877644322 111 11222233 45455566532 35788888765 22222221
Q ss_pred CCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC
Q 006473 230 SMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (643)
.....-.+++.. ++.+++.|+.++. +.+||+.+.
T Consensus 138 ---~~~~~v~~~~~~p~~~~~l~~~~~dg~----------------v~vwd~~~~ 173 (814)
T 3mkq_A 138 ---GHEHFVMCVAFNPKDPSTFASGCLDRT----------------VKVWSLGQS 173 (814)
T ss_dssp ---CCSSCEEEEEEETTEEEEEEEEETTSE----------------EEEEETTCS
T ss_pred ---CCCCcEEEEEEEcCCCCEEEEEeCCCe----------------EEEEECCCC
Confidence 111111223333 4567777776654 778887554
No 111
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=94.34 E-value=2.1 Score=44.85 Aligned_cols=140 Identities=7% Similarity=-0.038 Sum_probs=68.3
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcc
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~ 152 (643)
+.+.| ++.+++.|+. -+.+.+||..+.+....-.+. ...-.+++.. ++.+++.||...
T Consensus 114 ~~~~p--~~~~l~s~s~---------Dg~i~vwd~~~~~~~~~l~~h---~~~V~~v~~~~~~~~l~sgs~D~------- 172 (410)
T 1vyh_C 114 VIFHP--VFSVMVSASE---------DATIKVWDYETGDFERTLKGH---TDSVQDISFDHSGKLLASCSADM------- 172 (410)
T ss_dssp EEECS--SSSEEEEEES---------SSCEEEEETTTCCCCEEECCC---SSCEEEEEECTTSSEEEEEETTS-------
T ss_pred EEEcC--CCCEEEEEeC---------CCeEEEEECCCCcEEEEEecc---CCcEEEEEEcCCCCEEEEEeCCC-------
Confidence 34444 5677888873 246888998877543321111 1111222222 566777777543
Q ss_pred eecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCC
Q 006473 153 HHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS 230 (643)
Q Consensus 153 ~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~ 230 (643)
.+.+||+.+..-... +..-...-.++.+ ++..++.||.+ ..+.+||+.+..-...-..
T Consensus 173 ----~i~iwd~~~~~~~~~----~~~h~~~V~~v~~~p~~~~l~s~s~D---------~~i~~wd~~~~~~~~~~~~--- 232 (410)
T 1vyh_C 173 ----TIKLWDFQGFECIRT----MHGHDHNVSSVSIMPNGDHIVSASRD---------KTIKMWEVQTGYCVKTFTG--- 232 (410)
T ss_dssp ----CCCEEETTSSCEEEC----CCCCSSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCCEEEEEEC---
T ss_pred ----eEEEEeCCCCceeEE----EcCCCCCEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcEEEEEeC---
Confidence 355677766543221 1111111122223 45566667642 4578889877653221111
Q ss_pred CCCCCccceeEEEe-CCEEEEEcCCCCC
Q 006473 231 MWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (643)
Q Consensus 231 ~~P~~R~~~s~~~~-~~~iyv~GG~~~~ 257 (643)
....-.++... ++.+++.|+.++.
T Consensus 233 ---h~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 233 ---HREWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp ---CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ---CCccEEEEEECCCCCEEEEEcCCCe
Confidence 11111122222 6677778877655
No 112
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.32 E-value=2.1 Score=42.60 Aligned_cols=200 Identities=7% Similarity=-0.005 Sum_probs=98.9
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcE--EEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W--~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~ 148 (643)
.+++.|. +..||+.+. + .+.+++||+.+++. ..+.... .++ ++++.. +..|| .+.....
T Consensus 44 ~~~~s~d-g~~l~~~~~----~-----~~~i~~~d~~~~~~~~~~~~~~~--~~~--~~~~~s~dg~~l~-~~~~~~~-- 106 (331)
T 3u4y_A 44 DTAITSD-CSNVVVTSD----F-----CQTLVQIETQLEPPKVVAIQEGQ--SSM--ADVDITPDDQFAV-TVTGLNH-- 106 (331)
T ss_dssp EEEECSS-SCEEEEEES----T-----TCEEEEEECSSSSCEEEEEEECS--SCC--CCEEECTTSSEEE-ECCCSSS--
T ss_pred eEEEcCC-CCEEEEEeC----C-----CCeEEEEECCCCceeEEecccCC--CCc--cceEECCCCCEEE-EecCCCC--
Confidence 5555552 234666555 1 24789999988874 3333322 222 212222 45666 3322110
Q ss_pred CCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CC-EEEEEeeeecCCCceeeecc-EEEEEcCCCc-eEEe
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYND-LYVFDLDQFK-WQEI 224 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~-~lyvfGG~~~~~~~~~~~~d-v~~yD~~t~~-W~~v 224 (643)
...+++||+.+.+...... ....-+.+++. ++ +||+.+.. .+. +++|++.... ....
T Consensus 107 ------~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~spdg~~l~~~~~~---------~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 107 ------PFNMQSYSFLKNKFISTIP----IPYDAVGIAISPNGNGLILIDRS---------SANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp ------SCEEEEEETTTTEEEEEEE----CCTTEEEEEECTTSSCEEEEEET---------TTTEEEEEEECTTCCEEEE
T ss_pred ------cccEEEEECCCCCeEEEEE----CCCCccceEECCCCCEEEEEecC---------CCceEEEEEECCCCcEeec
Confidence 1279999999887654432 12222444443 33 57766542 234 6667655321 1111
Q ss_pred --ccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCee---EEeccCCCCCCCc
Q 006473 225 --KPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW---SKVKKIGMPPGPR 297 (643)
Q Consensus 225 --~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W---~~l~~~g~~P~~R 297 (643)
... +....-..++.. +..||+.+.... .+.+||+.+.+. ...-..+.
T Consensus 168 ~~~~~-----~~~~~~~~~~~spdg~~l~v~~~~~~----------------~v~v~d~~~~~~~~~~~~~~~~~----- 221 (331)
T 3u4y_A 168 GQEFI-----SGGTRPFNITFTPDGNFAFVANLIGN----------------SIGILETQNPENITLLNAVGTNN----- 221 (331)
T ss_dssp EEEEE-----CSSSSEEEEEECTTSSEEEEEETTTT----------------EEEEEECSSTTSCEEEEEEECSS-----
T ss_pred CCccc-----cCCCCccceEECCCCCEEEEEeCCCC----------------eEEEEECCCCcccceeeeccCCC-----
Confidence 111 111111233333 345777664433 378899877665 22211111
Q ss_pred eeeEEEEE-CCe-EEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 298 AGFSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 298 ~g~s~~~~-~~~-iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
.-..+++. +++ +|+.... .+.|++||+.+.+...+..
T Consensus 222 ~~~~~~~spdg~~l~v~~~~--------------~~~i~~~d~~~~~~~~~~~ 260 (331)
T 3u4y_A 222 LPGTIVVSRDGSTVYVLTES--------------TVDVFNFNQLSGTLSFVKS 260 (331)
T ss_dssp CCCCEEECTTSSEEEEECSS--------------EEEEEEEETTTTEEEEEEE
T ss_pred CCceEEECCCCCEEEEEEcC--------------CCEEEEEECCCCceeeecc
Confidence 11234444 444 6665432 1348999999988766554
No 113
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=94.21 E-value=1.1 Score=46.63 Aligned_cols=155 Identities=12% Similarity=-0.011 Sum_probs=76.1
Q ss_pred EEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEecc-CCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEE
Q 006473 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL-KGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 136 ~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~-~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
.+++.|+.. ..+.+||+.+.+....-. .+ . .. ...++.+ ++.+++.|+. -..+.
T Consensus 145 ~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~-~-~~-~v~~~~~~~~~~~l~~~~~---------d~~i~ 201 (402)
T 2aq5_A 145 NVLLSAGCD-----------NVILVWDVGTGAAVLTLGPDV-H-PD-TIYSVDWSRDGALICTSCR---------DKRVR 201 (402)
T ss_dssp TEEEEEETT-----------SCEEEEETTTTEEEEEECTTT-C-CS-CEEEEEECTTSSCEEEEET---------TSEEE
T ss_pred CEEEEEcCC-----------CEEEEEECCCCCccEEEecCC-C-CC-ceEEEEECCCCCEEEEEec---------CCcEE
Confidence 467777642 358899998887654321 11 1 11 1222333 5566666664 24688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCee--EEecc
Q 006473 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW--SKVKK 289 (643)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W--~~l~~ 289 (643)
+||+.+..-...-.... ...+. ..++.. ++.+++.|.... ....+.+||+.+..- .....
T Consensus 202 iwd~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~l~~g~~~~-------------~d~~i~iwd~~~~~~~~~~~~~ 264 (402)
T 2aq5_A 202 VIEPRKGTVVAEKDRPH---EGTRP-VHAVFVSEGKILTTGFSRM-------------SERQVALWDTKHLEEPLSLQEL 264 (402)
T ss_dssp EEETTTTEEEEEEECSS---CSSSC-CEEEECSTTEEEEEEECTT-------------CCEEEEEEETTBCSSCSEEEEC
T ss_pred EEeCCCCceeeeeccCC---CCCcc-eEEEEcCCCcEEEEeccCC-------------CCceEEEEcCccccCCceEEec
Confidence 99998765433221100 11111 222222 677777762110 113478888765431 11111
Q ss_pred CCCCCCCceeeEEEEE-C-CeEEEeccccccccCccccccccCCcEEEEECCCCc--EEEeEe
Q 006473 290 IGMPPGPRAGFSMCVH-K-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR--WYPLEL 348 (643)
Q Consensus 290 ~g~~P~~R~g~s~~~~-~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~--W~~l~~ 348 (643)
+....-.++++. + ..+++.|+.. +.|.+||+.+.. ...+..
T Consensus 265 ----~~~~~v~~~~~s~~~~~l~~~g~~d--------------g~i~i~d~~~~~~~~~~l~~ 309 (402)
T 2aq5_A 265 ----DTSSGVLLPFFDPDTNIVYLCGKGD--------------SSIRYFEITSEAPFLHYLSM 309 (402)
T ss_dssp ----CCCSSCEEEEEETTTTEEEEEETTC--------------SCEEEEEECSSTTCEEEEEE
T ss_pred ----cCCCceeEEEEcCCCCEEEEEEcCC--------------CeEEEEEecCCCcceEeecc
Confidence 111122334444 3 4455566432 358899988776 444443
No 114
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=94.17 E-value=5.9 Score=40.71 Aligned_cols=105 Identities=7% Similarity=0.055 Sum_probs=54.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++.+++.|+. -+.+.+||+.+..-...-.. ....-.+++.. ++.+++.|+.. ..+.
T Consensus 108 ~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~d-----------~~i~ 164 (420)
T 3vl1_A 108 QMRRFILGTT---------EGDIKVLDSNFNLQREIDQA---HVSEITKLKFFPSGEALISSSQD-----------MQLK 164 (420)
T ss_dssp SSCEEEEEET---------TSCEEEECTTSCEEEEETTS---SSSCEEEEEECTTSSEEEEEETT-----------SEEE
T ss_pred CCCEEEEEEC---------CCCEEEEeCCCcceeeeccc---ccCccEEEEECCCCCEEEEEeCC-----------CeEE
Confidence 5677777772 24678889887765544221 11222223332 45566666642 4588
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
+||+.+.+-...-. .....-.+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 165 iwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~~~ 214 (420)
T 3vl1_A 165 IWSVKDGSNPRTLI---GHRATVTDIAIIDRGRNVLSASLD---------GTIRLWECGTGT 214 (420)
T ss_dssp EEETTTCCCCEEEE---CCSSCEEEEEEETTTTEEEEEETT---------SCEEEEETTTTE
T ss_pred EEeCCCCcCceEEc---CCCCcEEEEEEcCCCCEEEEEcCC---------CcEEEeECCCCc
Confidence 88987654221110 011111222232 45556666642 357888887664
No 115
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=94.16 E-value=3.1 Score=41.85 Aligned_cols=163 Identities=10% Similarity=0.038 Sum_probs=79.7
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
+.+.+|+..+..-...-.. ....-.+++.. ++.+++.|+.. ..+.+||+.+.+-...-. +...+
T Consensus 144 g~v~i~~~~~~~~~~~~~~---~~~~v~~~~~spdg~~lasg~~d-----------g~i~iwd~~~~~~~~~~~-~h~~~ 208 (321)
T 3ow8_A 144 GKVNIFGVESGKKEYSLDT---RGKFILSIAYSPDGKYLASGAID-----------GIINIFDIATGKLLHTLE-GHAMP 208 (321)
T ss_dssp SEEEEEETTTCSEEEEEEC---SSSCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEEC-CCSSC
T ss_pred CcEEEEEcCCCceeEEecC---CCceEEEEEECCCCCEEEEEcCC-----------CeEEEEECCCCcEEEEEc-ccCCc
Confidence 3577788776643322111 11111222222 56666777643 357889998876433211 11111
Q ss_pred CceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCC
Q 006473 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (643)
Q Consensus 180 Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~ 256 (643)
-.++.+ ++.+++.|+.+ ..+.+||+.+......-.. ....-.+++.. ++.+++.|+.++
T Consensus 209 ---v~~l~~spd~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~------h~~~v~~~~~sp~~~~l~s~s~D~ 270 (321)
T 3ow8_A 209 ---IRSLTFSPDSQLLVTASDD---------GYIKIYDVQHANLAGTLSG------HASWVLNVAFCPDDTHFVSSSSDK 270 (321)
T ss_dssp ---CCEEEECTTSCEEEEECTT---------SCEEEEETTTCCEEEEECC------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred ---eeEEEEcCCCCEEEEEcCC---------CeEEEEECCCcceeEEEcC------CCCceEEEEECCCCCEEEEEeCCC
Confidence 112233 56677777642 3578889876654322111 11111222222 566777888766
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEecccc
Q 006473 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVV 316 (643)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~ 316 (643)
. +.+||+.+.+-...-. + ....-.++++. ++..++.||..
T Consensus 271 ~----------------v~iwd~~~~~~~~~~~-~---h~~~v~~v~~s~~g~~l~s~~~d 311 (321)
T 3ow8_A 271 S----------------VKVWDVGTRTCVHTFF-D---HQDQVWGVKYNGNGSKIVSVGDD 311 (321)
T ss_dssp C----------------EEEEETTTTEEEEEEC-C---CSSCEEEEEECTTSSEEEEEETT
T ss_pred c----------------EEEEeCCCCEEEEEEc-C---CCCcEEEEEECCCCCEEEEEeCC
Confidence 5 7788887654332211 1 11122334443 46677777753
No 116
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=94.01 E-value=4.8 Score=39.14 Aligned_cols=177 Identities=10% Similarity=0.067 Sum_probs=90.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++.||+.+.. ..+.+++|++.......+.... ...-+.++.. ++.|||.... .+.++
T Consensus 88 ~g~l~v~~~~--------~~~~i~~~d~~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-----------~~~i~ 145 (286)
T 1q7f_A 88 SGDIIVTERS--------PTHQIQIYNQYGQFVRKFGATI---LQHPRGVTVDNKGRIIVVECK-----------VMRVI 145 (286)
T ss_dssp TTEEEEEECG--------GGCEEEEECTTSCEEEEECTTT---CSCEEEEEECTTSCEEEEETT-----------TTEEE
T ss_pred CCeEEEEcCC--------CCCEEEEECCCCcEEEEecCcc---CCCceEEEEeCCCCEEEEECC-----------CCEEE
Confidence 5788887631 0246888996655444443321 1122334333 5678887542 24688
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccc
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~ 238 (643)
+||+.......+...+ ....-+.+++- ++.||+.... .+.|++||+.......+... +....|
T Consensus 146 ~~~~~g~~~~~~~~~~--~~~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~g~~~~~~~~~--g~~~~p--- 209 (286)
T 1q7f_A 146 IFDQNGNVLHKFGCSK--HLEFPNGVVVNDKQEIFISDNR---------AHCVKVFNYEGQYLRQIGGE--GITNYP--- 209 (286)
T ss_dssp EECTTSCEEEEEECTT--TCSSEEEEEECSSSEEEEEEGG---------GTEEEEEETTCCEEEEESCT--TTSCSE---
T ss_pred EEcCCCCEEEEeCCCC--ccCCcEEEEECCCCCEEEEECC---------CCEEEEEcCCCCEEEEEccC--CccCCC---
Confidence 8997665544443211 11112233333 5788886542 35789999865544444322 111111
Q ss_pred eeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEec
Q 006473 239 FQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFG 313 (643)
Q Consensus 239 ~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfG 313 (643)
.+++.. ++.|||...... ..+.+|++....-..+.... +. ..-+++++. ++++|+..
T Consensus 210 ~~i~~d~~G~l~v~~~~~~---------------~~i~~~~~~g~~~~~~~~~~--~~-~~~~~i~~~~~g~l~vs~ 268 (286)
T 1q7f_A 210 IGVGINSNGEILIADNHNN---------------FNLTIFTQDGQLISALESKV--KH-AQCFDVALMDDGSVVLAS 268 (286)
T ss_dssp EEEEECTTCCEEEEECSSS---------------CEEEEECTTSCEEEEEEESS--CC-SCEEEEEEETTTEEEEEE
T ss_pred cEEEECCCCCEEEEeCCCC---------------EEEEEECCCCCEEEEEcccC--CC-CcceeEEECCCCcEEEEC
Confidence 233333 667888765432 13778887654434443211 11 112344444 67888874
No 117
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=93.97 E-value=7.1 Score=40.91 Aligned_cols=133 Identities=8% Similarity=0.065 Sum_probs=70.2
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
..+.+||+.+..-...-. .... .-.+++.. ++..++.|+.+ ..+.+||+.+.+- +.... .
T Consensus 290 ~~i~vwd~~~~~~~~~~~--~~~~-~v~~~~~~~~~~~l~sg~~d---------g~i~vwd~~~~~~--~~~~~-----~ 350 (464)
T 3v7d_B 290 NTLIVWDVAQMKCLYILS--GHTD-RIYSTIYDHERKRCISASMD---------TTIRIWDLENGEL--MYTLQ-----G 350 (464)
T ss_dssp SCEEEEETTTTEEEEEEC--CCSS-CEEEEEEETTTTEEEEEETT---------SCEEEEETTTTEE--EEEEC-----C
T ss_pred CeEEEEECCCCcEEEEec--CCCC-CEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCcE--EEEEe-----C
Confidence 358889988765433221 1111 11222222 44556666642 4588899877643 22221 1
Q ss_pred CccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecc
Q 006473 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (643)
Q Consensus 235 ~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG 314 (643)
.......+.+.+..++.|+.++. +.+||+.+..-..... ........+...++.+++.|+
T Consensus 351 h~~~v~~~~~~~~~l~s~s~dg~----------------v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 351 HTALVGLLRLSDKFLVSAAADGS----------------IRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp CSSCEEEEEECSSEEEEEETTSE----------------EEEEETTTCCEEEEEE----CTTCCCEEEEEECSSEEEEEE
T ss_pred CCCcEEEEEEcCCEEEEEeCCCc----------------EEEEECCCCceeeeec----CCCCccEEEEEeCCCEEEEec
Confidence 11112233345677777777654 7788887654222211 112223334445777777776
Q ss_pred ccccccCccccccccCCcEEEEECCCCc
Q 006473 315 VVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
. +.|.+||+.+++
T Consensus 411 -d--------------g~i~iwd~~~g~ 423 (464)
T 3v7d_B 411 -E--------------NQFNIYNLRSGK 423 (464)
T ss_dssp -T--------------TEEEEEETTTCC
T ss_pred -C--------------CeEEEEECCCCc
Confidence 2 348999998765
No 118
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=93.93 E-value=1.5 Score=44.50 Aligned_cols=98 Identities=13% Similarity=0.163 Sum_probs=47.1
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
.+|.+|+.+++++.+.......|+ + ++.. +..||+.+....... .-.+|.++..++..+.+..... ..
T Consensus 30 ~~~~~d~~~g~~~~~~~~~~~~p~--~-l~~spdg~~l~~~~~~~~~~~------~v~~~~~~~~~g~~~~~~~~~~-~~ 99 (361)
T 3scy_A 30 YTFRFNEETGESLPLSDAEVANPS--Y-LIPSADGKFVYSVNEFSKDQA------AVSAFAFDKEKGTLHLLNTQKT-MG 99 (361)
T ss_dssp EEEEEETTTCCEEEEEEEECSCCC--S-EEECTTSSEEEEEECCSSTTC------EEEEEEEETTTTEEEEEEEEEC-SS
T ss_pred EEEEEeCCCCCEEEeecccCCCCc--e-EEECCCCCEEEEEEccCCCCC------cEEEEEEeCCCCcEEEeeEecc-CC
Confidence 466678888888766532111111 1 2222 445777665311111 1235677777777776654111 11
Q ss_pred CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 180 Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
..-+..+.-++.||+.+ .. -..+.+|++..
T Consensus 100 ~~p~~~~~dg~~l~~~~-~~--------~~~v~~~~~~~ 129 (361)
T 3scy_A 100 ADPCYLTTNGKNIVTAN-YS--------GGSITVFPIGQ 129 (361)
T ss_dssp SCEEEEEECSSEEEEEE-TT--------TTEEEEEEBCT
T ss_pred CCcEEEEECCCEEEEEE-CC--------CCEEEEEEeCC
Confidence 12222333344555543 21 24577888754
No 119
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=93.92 E-value=4.2 Score=40.08 Aligned_cols=109 Identities=11% Similarity=0.065 Sum_probs=53.9
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCc-eeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPR-SAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pR-s~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P 177 (643)
+.|+.||+.+.+....... +... .-+.++.. +..+|+.++. -..+++||+.+.+-...-..+.+
T Consensus 11 ~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~v~~~~-----------~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITI--ADAGPTPMVPMVAPGGRIAYATVNK-----------SESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp TEEEEEETTTTEEEEEEEC--TTCTTCCCCEEECTTSSEEEEEETT-----------TTEEEEEETTTCCEEEEEECCBT
T ss_pred CeEEEEECCCCcEEEEEEc--CCCCCCccceEEcCCCCEEEEEeCC-----------CCeEEEEECCCCCeEeeEEcCCc
Confidence 5789999988765432211 1110 11223332 3478887653 24699999988775432221111
Q ss_pred C--CCceeEEEEE--CCEEEEEeeeecCCCceee---eccEEEEEcCCCceEE
Q 006473 178 S--PRSGHRMVLY--KHKIIVFGGFYDTLREVRY---YNDLYVFDLDQFKWQE 223 (643)
Q Consensus 178 ~--~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~---~~dv~~yD~~t~~W~~ 223 (643)
. ...-+.+++. +++||+......... ..+ ...+++||+.+.+...
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~-~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLEL-THFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECS-SCEEECCCEEEEEETTTTEEEE
T ss_pred ccccccccceEECCCCCEEEEEeccccccc-ccccccCceEEEEECCCCcEEE
Confidence 0 0011223333 346776642211000 011 3689999998876543
No 120
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=93.86 E-value=3.3 Score=40.77 Aligned_cols=86 Identities=8% Similarity=0.091 Sum_probs=43.6
Q ss_pred eEEEEeccCC-CEEEEEcceecCCCCceeeccEEEEECCCCcEEEe-cCCCCCCC-ceeeEEEEE-CCEEEEEeCccCCC
Q 006473 72 CSLNINPLKE-TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVI-SSPNSPPP-RSAHQAVSW-KNYLYIFGGEFTSP 147 (643)
Q Consensus 72 ~s~~~~~~~~-~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l-~s~~~P~p-Rs~ha~~~~-~~~iyvfGG~~~~~ 147 (643)
+++++.+ + +.||+.+.. +.+++||+. ++...+ .......+ ..-+.++.. ++.||+........
T Consensus 74 ~~i~~~~--~~g~l~v~~~~----------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~ 140 (314)
T 1pjx_A 74 AGCQCDR--DANQLFVADMR----------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVA 140 (314)
T ss_dssp EEEEECS--SSSEEEEEETT----------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCT
T ss_pred ceEEEec--CCCcEEEEECC----------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccc
Confidence 3455544 4 677776541 358899998 777765 32211111 112333333 67788865422100
Q ss_pred ----CCCcceecCeEEEEECCCCcEEEe
Q 006473 148 ----NQERFHHYKDFWMLDLKTNQWEQL 171 (643)
Q Consensus 148 ----~~~~~~~~~dv~~yD~~t~~W~~~ 171 (643)
..........+++||+. .+...+
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 141 PADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp TSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred cccccccccCCCCeEEEECCC-CCEEEe
Confidence 00000112578999987 665544
No 121
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=93.85 E-value=3.8 Score=45.95 Aligned_cols=158 Identities=9% Similarity=0.061 Sum_probs=79.0
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCC-----CcEEEeccCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT-----NQWEQLNLKG 175 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t-----~~W~~~~~~g 175 (643)
..++++|+.+++-..+.... . ........-+++.+++.. -..++++|+.+ +....+...+
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~--~-~~~~~~~SpdG~~la~~~------------~~~i~v~~~~~~~~~~g~~~~~~~~~ 165 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTN--E-ETASLDFSPVGDRVAYVR------------NHNLYIARGGKLGEGMSRAIAVTIDG 165 (706)
T ss_dssp TEEEEEETTTTEEEEEECCT--T-CCTTCEECTTSSEEEEEE------------TTEEEEEECBCTTSCCCCCEESCSCC
T ss_pred CEEEEEECCCCceEEccCCc--c-cccCCcCCCCCCEEEEEE------------CCeEEEEecCcccccCCCcEEeccCC
Confidence 47899999998877765432 1 111111111343333331 14688999888 7766654322
Q ss_pred CCCCCce----------eEEEEE--CCEEEEEeeeecCCCc------------------------eeeeccEEEEEcCCC
Q 006473 176 CPSPRSG----------HRMVLY--KHKIIVFGGFYDTLRE------------------------VRYYNDLYVFDLDQF 219 (643)
Q Consensus 176 ~P~~Rs~----------h~~~~~--~~~lyvfGG~~~~~~~------------------------~~~~~dv~~yD~~t~ 219 (643)
......+ ...+.+ +++.++++.++..... ......|+++|+.+.
T Consensus 166 ~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~ 245 (706)
T 2z3z_A 166 TETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG 245 (706)
T ss_dssp BTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT
T ss_pred CCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC
Confidence 1100000 022333 5666666664322100 012357999999887
Q ss_pred ceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC-eeEEec
Q 006473 220 KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW-EWSKVK 288 (643)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~-~W~~l~ 288 (643)
.-..+.... .....-.++... ++..++++..+.. .....++++|+.+. .+..+.
T Consensus 246 ~~~~~~~~~----~~~~~~~~~~~spdg~~l~~~~~~~~-----------~~~~~v~~~d~~~g~~~~~~~ 301 (706)
T 2z3z_A 246 KTVYLQTGE----PKEKFLTNLSWSPDENILYVAEVNRA-----------QNECKVNAYDAETGRFVRTLF 301 (706)
T ss_dssp EEEECCCCS----CTTCEEEEEEECTTSSEEEEEEECTT-----------SCEEEEEEEETTTCCEEEEEE
T ss_pred ceEeeccCC----CCceeEeeEEEECCCCEEEEEEeCCC-----------CCeeEEEEEECCCCceeeEEE
Confidence 655543220 111111222222 5554444443332 23457899999887 676654
No 122
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=93.81 E-value=1.5 Score=42.06 Aligned_cols=148 Identities=16% Similarity=0.328 Sum_probs=79.3
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEE--ecC--CCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCccee
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV--ISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~--l~s--~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~ 154 (643)
++++|+|=|. .+|+++.....+.. |.. +.+| ..--++... ++.||+|-|
T Consensus 33 ~g~~y~Fkg~-----------~~wr~~~~~~~~~p~~I~~~wp~Lp--~~iDAa~~~~~~~~iyfFkG------------ 87 (207)
T 1pex_A 33 RGETMIFKDR-----------FFWRLHPQQVDAELFLTKSFWPELP--NRIDAAYEHPSHDLIFIFRG------------ 87 (207)
T ss_dssp TTEEEEEETT-----------EEEEECSSSSCCEEEEHHHHCTTSC--SSCCEEEEETTTTEEEEEET------------
T ss_pred CCcEEEEECC-----------EEEEEeCCCcCCCceehhHhccCCC--CCccEEEEeccCCcEEEEcc------------
Confidence 6889998883 57777765544332 211 2233 222333333 589999988
Q ss_pred cCeEEEEECCCCcE---EEeccCCCCCCCcee-EEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEE-----
Q 006473 155 YKDFWMLDLKTNQW---EQLNLKGCPSPRSGH-RMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE----- 223 (643)
Q Consensus 155 ~~dv~~yD~~t~~W---~~~~~~g~P~~Rs~h-~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~----- 223 (643)
+.+|+|+..+-.- ..+...|+|..-.+- +++.+ ++++|+|-| +..|+||..+.+-..
T Consensus 88 -~~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-----------~~ywr~d~~~~~~d~gyPr~ 155 (207)
T 1pex_A 88 -RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-----------NQVWRYDDTNHIMDKDYPRL 155 (207)
T ss_dssp -TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-----------TEEEEEETTTTEECSSCCCB
T ss_pred -CEEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-----------CEEEEEeCcCccccCCCCcc
Confidence 4578886432211 233333444322222 33333 479999977 457999987543110
Q ss_pred eccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 224 IKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
+...-.+ +| .... ++...++.+|+|-|. ..|+||..+.+-..
T Consensus 156 i~~~~~G-ip-~~iD-aAf~~~g~~YfFkg~------------------~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 156 IEEDFPG-IG-DKVD-AVYEKNGYIYFFNGP------------------IQFEYSIWSNRIVR 197 (207)
T ss_dssp HHHHSTT-SC-SCCS-EEEEETTEEEEEETT------------------EEEEEETTTTEEEE
T ss_pred HHHcCCC-CC-CCcc-EEEEcCCcEEEEECC------------------EEEEEeCCccEEec
Confidence 1000001 12 1222 333458999999764 37889887665443
No 123
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=93.80 E-value=1.8 Score=42.63 Aligned_cols=202 Identities=11% Similarity=0.041 Sum_probs=97.1
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCC--CCCceeeEEEEECCEEEEE----eCccC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS--PPPRSAHQAVSWKNYLYIF----GGEFT 145 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~--P~pRs~ha~~~~~~~iyvf----GG~~~ 145 (643)
.++++.+ ++.||+... + .+.|++||+.+++...+..... +..+....++.-++.||+. |....
T Consensus 72 ~~l~~~~--dg~l~v~~~----~-----~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~ 140 (296)
T 3e5z_A 72 NGHCLNK--QGHLIACSH----G-----LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP 140 (296)
T ss_dssp EEEEECT--TCCEEEEET----T-----TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred ceeeECC--CCcEEEEec----C-----CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence 3455554 566766543 1 1468999998888876643210 1111112222226788886 33110
Q ss_pred CC--CCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcC-CCce
Q 006473 146 SP--NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFKW 221 (643)
Q Consensus 146 ~~--~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~-t~~W 221 (643)
.. ..........+|+|++. ++...+... ...-.+++.. ++++++.... .+.+++|++. +.+.
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~----~~~~~gi~~s~dg~~lv~~~~---------~~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 141 EEGYGGEMELPGRWVFRLAPD-GTLSAPIRD----RVKPNGLAFLPSGNLLVSDTG---------DNATHRYCLNARGET 206 (296)
T ss_dssp GGSSCCCCCSSSCEEEEECTT-SCEEEEECC----CSSEEEEEECTTSCEEEEETT---------TTEEEEEEECSSSCE
T ss_pred cccccccccCCCcEEEEECCC-CCEEEeecC----CCCCccEEECCCCCEEEEeCC---------CCeEEEEEECCCCcC
Confidence 00 00000012479999987 555554321 1111233332 4555543321 3578899886 4554
Q ss_pred -EEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCcee
Q 006473 222 -QEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (643)
Q Consensus 222 -~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g 299 (643)
....... .....|+ +++.. ++.|||.. .. .+++|++.......+... .. -
T Consensus 207 ~~~~~~~~-~~~~~p~---~i~~d~~G~l~v~~--~~----------------~v~~~~~~g~~~~~~~~~----~~--~ 258 (296)
T 3e5z_A 207 EYQGVHFT-VEPGKTD---GLRVDAGGLIWASA--GD----------------GVHVLTPDGDELGRVLTP----QT--T 258 (296)
T ss_dssp EEEEEEEC-CSSSCCC---SEEEBTTSCEEEEE--TT----------------EEEEECTTSCEEEEEECS----SC--C
T ss_pred cCCCeEee-CCCCCCC---eEEECCCCCEEEEc--CC----------------eEEEECCCCCEEEEEECC----CC--c
Confidence 2111110 0001111 23333 67788776 22 378999886555555432 11 1
Q ss_pred eEEEEE--C-CeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 300 FSMCVH--K-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 300 ~s~~~~--~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.++++- + +.||+... +.||+|++.+.+
T Consensus 259 ~~~~f~~~d~~~L~v~t~----------------~~l~~~~~~~~~ 288 (296)
T 3e5z_A 259 SNLCFGGPEGRTLYMTVS----------------TEFWSIETNVRG 288 (296)
T ss_dssp CEEEEESTTSCEEEEEET----------------TEEEEEECSCCB
T ss_pred eeEEEECCCCCEEEEEcC----------------CeEEEEEccccc
Confidence 223332 2 34555432 348999988764
No 124
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.76 E-value=3.3 Score=47.27 Aligned_cols=143 Identities=12% Similarity=0.125 Sum_probs=78.2
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
++.|||+||.. +-+++||+.++++..+...+.+....-.+++.- ++.||+ |. ..-|.
T Consensus 482 ~g~lWi~~~t~-----------~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt----------~~Gl~ 539 (758)
T 3ott_A 482 EGNVWVLLYNN-----------KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GF----------HGGVM 539 (758)
T ss_dssp TSCEEEEETTC-----------SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EE----------TTEEE
T ss_pred CCCEEEEccCC-----------CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-Ee----------cCceE
Confidence 57899877642 458899999999988754222211111222222 567885 33 13488
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCC
Q 006473 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (643)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 292 (643)
+||+.+.++...... ..|. ..-++++..++.|+|... .. +.+||+.+.+.....
T Consensus 540 ~~~~~~~~~~~~~~~---gl~~-~~i~~i~~~~g~lWi~t~--~G----------------l~~~~~~~~~~~~~~---- 593 (758)
T 3ott_A 540 RINPKDESQQSISFG---SFSN-NEILSMTCVKNSIWVSTT--NG----------------LWIIDRKTMDARQQN---- 593 (758)
T ss_dssp EECC--CCCCBCCCC---C----CCEEEEEEETTEEEEEES--SC----------------EEEEETTTCCEEEC-----
T ss_pred EEecCCCceEEeccc---CCCc-cceEEEEECCCCEEEECC--CC----------------eEEEcCCCceeEEec----
Confidence 999988877655321 1122 223334444788887652 22 789999988766542
Q ss_pred CCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 293 PPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 293 ~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
.|...+. .++.. .+--+.|||..+ +..|+|..
T Consensus 594 ~~~~~~~-~~~~~~~~G~l~fG~~~G---------------l~~f~p~~ 626 (758)
T 3ott_A 594 MTNKRFT-SLLFDPKEDCVYLGGADG---------------FGISHSNL 626 (758)
T ss_dssp -CCCCCS-EEEEETTTTEEEEECBSE---------------EEEEEC--
T ss_pred CCCCcee-eeEEECCCCcEEEecCCc---------------eEEEChhh
Confidence 1333333 23333 344566777654 77888764
No 125
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=93.65 E-value=5.4 Score=40.57 Aligned_cols=219 Identities=13% Similarity=0.092 Sum_probs=105.9
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECC-EEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~-~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
+++.++|... .++ ...+|.+|+.+.+.+.+.... .......+..-++ .|+..... ..++
T Consensus 46 Dg~~l~~~~~-~~g-----~~~l~~~d~~~g~~~~lt~~~--~~~~~~~~~spdg~~l~~~~~~------------~~l~ 105 (388)
T 3pe7_A 46 DGSKLLFGGA-FDG-----PWNYYLLDLNTQVATQLTEGR--GDNTFGGFLSPDDDALFYVKDG------------RNLM 105 (388)
T ss_dssp TSCEEEEEEC-TTS-----SCEEEEEETTTCEEEECCCSS--CBCSSSCEECTTSSEEEEEETT------------TEEE
T ss_pred CCCEEEEEEc-CCC-----CceEEEEeCCCCceEEeeeCC--CCCccceEEcCCCCEEEEEeCC------------CeEE
Confidence 5666666652 122 137999999999988886532 1111111112234 45444321 4789
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCC-------------CceeeeccEEEEEcCCCceEEe
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTL-------------REVRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~-------------~~~~~~~dv~~yD~~t~~W~~v 224 (643)
++|+.+.+-..+.. .|..........+ ++.+++.--..... ........|+++|+.+.+-..+
T Consensus 106 ~~d~~~g~~~~~~~--~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 183 (388)
T 3pe7_A 106 RVDLATLEENVVYQ--VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI 183 (388)
T ss_dssp EEETTTCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE
T ss_pred EEECCCCcceeeee--chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe
Confidence 99999988666544 3333222222222 33333211100000 0011236899999998876666
Q ss_pred ccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE
Q 006473 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (643)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~ 304 (643)
... +.......+...++..+++...... ......+|.+|+.+.....+... +........+.
T Consensus 184 ~~~-----~~~~~~~~~sp~dg~~l~~~~~~~~----------~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~~~~ 245 (388)
T 3pe7_A 184 LQE-----NQWLGHPIYRPYDDSTVAFCHEGPH----------DLVDARMWLINEDGTNMRKVKTH---AEGESCTHEFW 245 (388)
T ss_dssp EEE-----SSCEEEEEEETTEEEEEEEEECSCT----------TTSSCSEEEEETTSCCCEESCCC---CTTEEEEEEEE
T ss_pred ecC-----CccccccEECCCCCCEEEEEEecCC----------CCCcceEEEEeCCCCceEEeeeC---CCCcccccceE
Confidence 543 1111222222203443333322111 01235699999887766665431 11111112222
Q ss_pred E-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 305 H-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 305 ~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
. +++.++|..... ......|++||+.+.+-..+..
T Consensus 246 spdg~~l~~~~~~~---------~~~~~~l~~~d~~~g~~~~l~~ 281 (388)
T 3pe7_A 246 VPDGSALVYVSYLK---------GSPDRFIYSADPETLENRQLTS 281 (388)
T ss_dssp CTTSSCEEEEEEET---------TCCCEEEEEECTTTCCEEEEEE
T ss_pred CCCCCEEEEEecCC---------CCCcceEEEEecCCCceEEEEc
Confidence 2 555444433221 0111249999999988766644
No 126
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=93.64 E-value=8.7 Score=43.32 Aligned_cols=151 Identities=12% Similarity=0.013 Sum_probs=81.1
Q ss_pred cCeEEEEECCC------C--cEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCC---ceEE
Q 006473 155 YKDFWMLDLKT------N--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF---KWQE 223 (643)
Q Consensus 155 ~~dv~~yD~~t------~--~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~---~W~~ 223 (643)
.+.+|++|+.+ . .+..+... .... .......++.||+.+.... ....|+++|+.+. .|+.
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~--~~~~-~~~~s~dg~~l~~~s~~~~------~~~~l~~~d~~~~~~~~~~~ 328 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDN--FEGE-YDYVTNEGTVFTFKTNRHS------PNYRLINIDFTDPEESKWKV 328 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECS--SSSC-EEEEEEETTEEEEEECTTC------TTCEEEEEETTSCCGGGCEE
T ss_pred ccEEEEEECcccccccCCccceEEeeCC--CCcE-EEEEeccCCEEEEEECCCC------CCCEEEEEeCCCCCccccee
Confidence 36899999876 4 57777541 1111 1122234678888765321 1357999998875 4888
Q ss_pred eccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe-eEEeccCCCCCCCceeeE
Q 006473 224 IKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE-WSKVKKIGMPPGPRAGFS 301 (643)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~-W~~l~~~g~~P~~R~g~s 301 (643)
+.+.. ....-..+... ++.|++.....+ ...++++++.+.. ...+.. | ...-.+
T Consensus 329 l~~~~-----~~~~~~~~~~~~~~~lv~~~~~~g--------------~~~l~~~~~~~g~~~~~l~~----~-~~~v~~ 384 (710)
T 2xdw_A 329 LVPEH-----EKDVLEWVACVRSNFLVLCYLHDV--------------KNTLQLHDLATGALLKIFPL----E-VGSVVG 384 (710)
T ss_dssp EECCC-----SSCEEEEEEEETTTEEEEEEEETT--------------EEEEEEEETTTCCEEEEECC----C-SSEEEE
T ss_pred ccCCC-----CCCeEEEEEEEcCCEEEEEEEECC--------------EEEEEEEECCCCCEEEecCC----C-CceEEE
Confidence 76541 11122233444 677777665432 3458899985543 444432 2 111112
Q ss_pred EEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCc--EEEeEe
Q 006473 302 MCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR--WYPLEL 348 (643)
Q Consensus 302 ~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~--W~~l~~ 348 (643)
++.- ++..++|...+. .....+|.||+.+++ +..+..
T Consensus 385 ~~~s~d~~~l~~~~ss~----------~~P~~i~~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 385 YSGQKKDTEIFYQFTSF----------LSPGIIYHCDLTKEELEPRVFRE 424 (710)
T ss_dssp EECCTTCSEEEEEEECS----------SCCCEEEEEETTSSSCCCEEEEE
T ss_pred EecCCCCCEEEEEEeCC----------CCCCEEEEEECCCCccceEEeee
Confidence 2221 333333332211 124579999999877 666554
No 127
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=93.59 E-value=4.2 Score=42.59 Aligned_cols=172 Identities=13% Similarity=0.128 Sum_probs=87.5
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEe-ccCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSP 179 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~-~~~g~P~~ 179 (643)
+.+.+||+.+++....-.. ......++.+.+.+++.|+.. ..+.+||+.+..-... .. ....
T Consensus 193 g~i~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~l~s~s~d-----------g~i~vwd~~~~~~~~~~~~--~~~~ 255 (435)
T 1p22_A 193 STVRVWDVNTGEMLNTLIH----HCEAVLHLRFNNGMMVTCSKD-----------RSIAVWDMASPTDITLRRV--LVGH 255 (435)
T ss_dssp SCEEEEESSSCCEEEEECC----CCSCEEEEECCTTEEEEEETT-----------SCEEEEECSSSSCCEEEEE--ECCC
T ss_pred CeEEEEECCCCcEEEEEcC----CCCcEEEEEEcCCEEEEeeCC-----------CcEEEEeCCCCCCceeeeE--ecCC
Confidence 3678888887765433221 111223333455566676642 3577888876542211 11 0111
Q ss_pred CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCC
Q 006473 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS 259 (643)
Q Consensus 180 Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~ 259 (643)
.....++.+++..++.|+.+ ..+.+||+.+..-...-.. .......+..++.+++.|+.++.
T Consensus 256 ~~~v~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~l~~g~~dg~-- 317 (435)
T 1p22_A 256 RAAVNVVDFDDKYIVSASGD---------RTIKVWNTSTCEFVRTLNG-------HKRGIACLQYRDRLVVSGSSDNT-- 317 (435)
T ss_dssp SSCEEEEEEETTEEEEEETT---------SEEEEEETTTCCEEEEEEC-------CSSCEEEEEEETTEEEEEETTSC--
T ss_pred CCcEEEEEeCCCEEEEEeCC---------CeEEEEECCcCcEEEEEcC-------CCCcEEEEEeCCCEEEEEeCCCe--
Confidence 11222333455556666642 4578899887643222111 11112233335667778877665
Q ss_pred CccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECC
Q 006473 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (643)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (643)
+.+||+.+..-...-. + ......++..++..++.|+.. +.|.+||+.
T Consensus 318 --------------i~iwd~~~~~~~~~~~-~----h~~~v~~~~~~~~~l~sg~~d--------------g~i~vwd~~ 364 (435)
T 1p22_A 318 --------------IRLWDIECGACLRVLE-G----HEELVRCIRFDNKRIVSGAYD--------------GKIKVWDLV 364 (435)
T ss_dssp --------------EEEEETTTCCEEEEEC-C----CSSCEEEEECCSSEEEEEETT--------------SCEEEEEHH
T ss_pred --------------EEEEECCCCCEEEEEe-C----CcCcEEEEEecCCEEEEEeCC--------------CcEEEEECC
Confidence 7888887654332211 1 111123333477778888753 348888864
Q ss_pred C
Q 006473 340 N 340 (643)
Q Consensus 340 t 340 (643)
+
T Consensus 365 ~ 365 (435)
T 1p22_A 365 A 365 (435)
T ss_dssp H
T ss_pred C
Confidence 3
No 128
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.53 E-value=2.7 Score=48.10 Aligned_cols=110 Identities=11% Similarity=0.071 Sum_probs=65.4
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++.|+|+||. .+-|++||+.++++..+.....+....-.+++.. ++.||+-.. .-+.
T Consensus 482 ~g~lWi~~~t---------~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~-------------~Gl~ 539 (758)
T 3ott_A 482 EGNVWVLLYN---------NKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFH-------------GGVM 539 (758)
T ss_dssp TSCEEEEETT---------CSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEET-------------TEEE
T ss_pred CCCEEEEccC---------CCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEec-------------CceE
Confidence 6788887662 1358999999999998753221111122233322 577886431 3588
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEe
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (643)
+||+.+..+..+...++|.. .-++++.-++.||+-. .+.+.+||+.+.+....
T Consensus 540 ~~~~~~~~~~~~~~~gl~~~-~i~~i~~~~g~lWi~t-----------~~Gl~~~~~~~~~~~~~ 592 (758)
T 3ott_A 540 RINPKDESQQSISFGSFSNN-EILSMTCVKNSIWVST-----------TNGLWIIDRKTMDARQQ 592 (758)
T ss_dssp EECC--CCCCBCCCCC---C-CEEEEEEETTEEEEEE-----------SSCEEEEETTTCCEEEC
T ss_pred EEecCCCceEEecccCCCcc-ceEEEEECCCCEEEEC-----------CCCeEEEcCCCceeEEe
Confidence 99999888776643344432 2334444578888743 24589999998877654
No 129
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=93.51 E-value=7.9 Score=43.66 Aligned_cols=218 Identities=12% Similarity=0.007 Sum_probs=109.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCC-----CCcce
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN-----QERFH 153 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~-----~~~~~ 153 (643)
+++.++|+.. ..|.. ...|+++|+.+++...+.... .....+.+ +++.++++....... .....
T Consensus 135 Dg~~la~~~~-~~G~~---~~~i~v~d~~tg~~~~~~~~~-----~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 205 (710)
T 2xdw_A 135 DGEYFAYGLS-ASGSD---WVTIKFMKVDGAKELPDVLER-----VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (710)
T ss_dssp TSSEEEEEEE-ETTCS---CEEEEEEETTTTEEEEEEEEE-----ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred CCCEEEEEEc-CCCCc---eEEEEEEECCCCCCCcccccC-----cccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence 5566665542 12221 137999999999887653211 11122233 444333433222100 00011
Q ss_pred ecCeEEEEECCCCcEE--EeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCC------C--ceE
Q 006473 154 HYKDFWMLDLKTNQWE--QLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ------F--KWQ 222 (643)
Q Consensus 154 ~~~dv~~yD~~t~~W~--~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t------~--~W~ 222 (643)
....+|++++.+.... .+.. ....+........- +++.++++...... ..+.+|++|+.+ . .+.
T Consensus 206 ~~~~v~~~~l~t~~~~~~~v~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~----~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 206 LHQKLYYHVLGTDQSEDILCAE-FPDEPKWMGGAELSDDGRYVLLSIREGCD----PVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCEEEEEETTSCGGGCEEEEC-CTTCTTCEEEEEECTTSCEEEEEEECSSS----SCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred CCCEEEEEECCCCcccceEEec-cCCCCeEEEEEEEcCCCCEEEEEEEccCC----CccEEEEEECcccccccCCccceE
Confidence 2456999999887642 2211 11112222222222 44444444332211 146899999876 4 577
Q ss_pred EeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC---eeEEeccCCCCCCC-ce
Q 006473 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW---EWSKVKKIGMPPGP-RA 298 (643)
Q Consensus 223 ~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~---~W~~l~~~g~~P~~-R~ 298 (643)
.+.... ... ...+...++.||+.+..... ...++++|+.+. .|..+... .. ..
T Consensus 281 ~l~~~~-----~~~-~~~~s~dg~~l~~~s~~~~~-------------~~~l~~~d~~~~~~~~~~~l~~~----~~~~~ 337 (710)
T 2xdw_A 281 KLIDNF-----EGE-YDYVTNEGTVFTFKTNRHSP-------------NYRLINIDFTDPEESKWKVLVPE----HEKDV 337 (710)
T ss_dssp EEECSS-----SSC-EEEEEEETTEEEEEECTTCT-------------TCEEEEEETTSCCGGGCEEEECC----CSSCE
T ss_pred EeeCCC-----CcE-EEEEeccCCEEEEEECCCCC-------------CCEEEEEeCCCCCcccceeccCC----CCCCe
Confidence 776541 111 12233447888888754321 245889998765 58887542 22 12
Q ss_pred eeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCc-EEEeE
Q 006473 299 GFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR-WYPLE 347 (643)
Q Consensus 299 g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~-W~~l~ 347 (643)
-.+++.. ++++++...... ...|+++++.+++ ...+.
T Consensus 338 ~~~~~~~~~~~lv~~~~~~g------------~~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCYLHDV------------KNTLQLHDLATGALLKIFP 376 (710)
T ss_dssp EEEEEEETTTEEEEEEEETT------------EEEEEEEETTTCCEEEEEC
T ss_pred EEEEEEEcCCEEEEEEEECC------------EEEEEEEECCCCCEEEecC
Confidence 2344555 667766654432 3457888875543 34443
No 130
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=93.48 E-value=3.5 Score=41.12 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=17.6
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEe
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVI 116 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l 116 (643)
++.+++.|+. -+.+.+||+.+.+....
T Consensus 85 ~~~~l~s~~~---------dg~i~iwd~~~~~~~~~ 111 (369)
T 3zwl_B 85 FTKYCVTGSA---------DYSIKLWDVSNGQCVAT 111 (369)
T ss_dssp TSSEEEEEET---------TTEEEEEETTTCCEEEE
T ss_pred CCCEEEEEeC---------CCeEEEEECCCCcEEEE
Confidence 4566666662 24688899888765543
No 131
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=93.39 E-value=0.5 Score=48.71 Aligned_cols=106 Identities=17% Similarity=0.087 Sum_probs=54.4
Q ss_pred CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCC
Q 006473 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSE 266 (643)
Q Consensus 189 ~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~ 266 (643)
++.+++.|+.+ ..|.+||+.+.+-...-.. ....-.+++.. ++.+++.||.++.
T Consensus 150 dg~~l~sgs~d---------g~v~iwd~~~~~~~~~~~~------h~~~v~~v~~s~~~~~~~~s~~~dg~--------- 205 (357)
T 4g56_B 150 DGTQAVSGGKD---------FSVKVWDLSQKAVLKSYNA------HSSEVNCVAACPGKDTIFLSCGEDGR--------- 205 (357)
T ss_dssp SSSEEEEEETT---------SCEEEEETTTTEEEEEECC------CSSCEEEEEECTTCSSCEEEEETTSC---------
T ss_pred CCCEEEEEeCC---------CeEEEEECCCCcEEEEEcC------CCCCEEEEEEccCCCceeeeeccCCc---------
Confidence 55666777643 3578889887653322111 01111122222 4457777877655
Q ss_pred CCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--CCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 267 KGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 267 ~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
+.+||+.+.+-...... ........++++. ++.+++.|+.. ..|.+||+.+.
T Consensus 206 -------v~~wd~~~~~~~~~~~~--~~~~~~v~~v~~sp~~~~~la~g~~d--------------~~i~~wd~~~~ 259 (357)
T 4g56_B 206 -------ILLWDTRKPKPATRIDF--CASDTIPTSVTWHPEKDDTFACGDET--------------GNVSLVNIKNP 259 (357)
T ss_dssp -------EEECCTTSSSCBCBCCC--TTCCSCEEEEEECTTSTTEEEEEESS--------------SCEEEEESSCG
T ss_pred -------eEEEECCCCceeeeeee--ccccccccchhhhhcccceEEEeecc--------------cceeEEECCCC
Confidence 66778766542222111 0111122233443 45677777653 34888888764
No 132
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=93.36 E-value=3 Score=41.32 Aligned_cols=93 Identities=12% Similarity=0.019 Sum_probs=49.5
Q ss_pred ccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 006473 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 209 ~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (643)
..+.+||+.+......-.. ....-.+++.. ++.+++.|+.++. +.+||+.+..-...
T Consensus 195 ~~i~i~d~~~~~~~~~~~~------h~~~v~~~~~s~~~~~l~s~s~Dg~----------------i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 195 KLVKVWNLANCKLKTNHIG------HTGYLNTVTVSPDGSLCASGGKDGQ----------------AMLWDLNEGKHLYT 252 (340)
T ss_dssp SCEEEEETTTTEEEEEECC------CSSCEEEEEECTTSSEEEEEETTCE----------------EEEEETTTTEEEEE
T ss_pred CEEEEEECCCCceeeEecC------CCCcEEEEEECCCCCEEEEEeCCCe----------------EEEEEeccCceeee
Confidence 3577888877654332211 11111222333 6677888887654 67788776543332
Q ss_pred ccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 288 KKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 288 ~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
... ...-.+++...+..++.|+.. +.|.+||+.+..
T Consensus 253 ~~~-----~~~v~~~~~~~~~~~~~~~~d--------------~~i~iwd~~~~~ 288 (340)
T 4aow_A 253 LDG-----GDIINALCFSPNRYWLCAATG--------------PSIKIWDLEGKI 288 (340)
T ss_dssp EEC-----SSCEEEEEECSSSSEEEEEET--------------TEEEEEETTTTE
T ss_pred ecC-----CceEEeeecCCCCceeeccCC--------------CEEEEEECCCCe
Confidence 211 112234444455556666642 348899987754
No 133
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=93.36 E-value=6.3 Score=40.67 Aligned_cols=148 Identities=11% Similarity=0.063 Sum_probs=74.3
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
++.+++.|+.. ..+.+||+.+.+-...-. + . ...-.+++.. ++..++.|+.+ ..+.
T Consensus 134 dg~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~-~-h-~~~v~~~~~~p~~~~l~s~s~d---------~~v~ 190 (393)
T 1erj_A 134 DGKFLATGAED-----------RLIRIWDIENRKIVMILQ-G-H-EQDIYSLDYFPSGDKLVSGSGD---------RTVR 190 (393)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEEC-C-C-SSCEEEEEECTTSSEEEEEETT---------SEEE
T ss_pred CCCEEEEEcCC-----------CeEEEEECCCCcEEEEEc-c-C-CCCEEEEEEcCCCCEEEEecCC---------CcEE
Confidence 56677777643 357888998876543321 1 1 1111222222 44555566642 4578
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccC
Q 006473 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (643)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 290 (643)
+||+.+......... ... -.+++.. ++.+++.|+.++. +.+||+.+..-...-..
T Consensus 191 iwd~~~~~~~~~~~~-----~~~--v~~~~~~~~~~~~l~~~s~d~~----------------v~iwd~~~~~~~~~~~~ 247 (393)
T 1erj_A 191 IWDLRTGQCSLTLSI-----EDG--VTTVAVSPGDGKYIAAGSLDRA----------------VRVWDSETGFLVERLDS 247 (393)
T ss_dssp EEETTTTEEEEEEEC-----SSC--EEEEEECSTTCCEEEEEETTSC----------------EEEEETTTCCEEEEEC-
T ss_pred EEECCCCeeEEEEEc-----CCC--cEEEEEECCCCCEEEEEcCCCc----------------EEEEECCCCcEEEeecc
Confidence 889887764333222 111 1122222 6678888887765 77888776643322110
Q ss_pred CC-C--CCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 291 GM-P--PGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 291 g~-~--P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
.. . .....-.++++. +++.++.|+.. ..|.+||+.+.
T Consensus 248 ~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d--------------~~v~~wd~~~~ 288 (393)
T 1erj_A 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLD--------------RSVKLWNLQNA 288 (393)
T ss_dssp -----CCCSSCEEEEEECTTSSEEEEEETT--------------SEEEEEEC---
T ss_pred cccCCCCCCCCEEEEEECCCCCEEEEEeCC--------------CEEEEEECCCC
Confidence 00 0 001112233333 56777777653 34888887653
No 134
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=93.35 E-value=3.9 Score=40.64 Aligned_cols=128 Identities=9% Similarity=-0.098 Sum_probs=64.7
Q ss_pred CceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCC
Q 006473 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~ 148 (643)
.....+..+. ++.||+.+-. .+.+++|++ +...+.+..+ ... .+.++.. ++.||+....
T Consensus 46 ~~egp~~~~~-g~~l~~~d~~---------~~~i~~~~~-~g~~~~~~~~---~~~-~~gl~~d~dG~l~v~~~~----- 105 (305)
T 3dr2_A 46 WSEGPAWWEA-QRTLVWSDLV---------GRRVLGWRE-DGTVDVLLDA---TAF-TNGNAVDAQQRLVHCEHG----- 105 (305)
T ss_dssp SEEEEEEEGG-GTEEEEEETT---------TTEEEEEET-TSCEEEEEES---CSC-EEEEEECTTSCEEEEETT-----
T ss_pred CccCCeEeCC-CCEEEEEECC---------CCEEEEEeC-CCCEEEEeCC---CCc-cceeeECCCCCEEEEECC-----
Confidence 3445555552 3457776541 246889998 4555544321 111 2233332 5778876421
Q ss_pred CCcceecCeEEEEECCCCcEEEeccCC--CCCCCceeEEEEE-CCEEEEE----eeeec---C-CCceeeeccEEEEEcC
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQLNLKG--CPSPRSGHRMVLY-KHKIIVF----GGFYD---T-LREVRYYNDLYVFDLD 217 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g--~P~~Rs~h~~~~~-~~~lyvf----GG~~~---~-~~~~~~~~dv~~yD~~ 217 (643)
...+++|++. .+.+.+.... .+..+ -+.+++. ++.||+. |-... . .....-...|++||+.
T Consensus 106 ------~~~v~~~~~~-g~~~~~~~~~~~~~~~~-~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 106 ------RRAITRSDAD-GQAHLLVGRYAGKRLNS-PNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp ------TTEEEEECTT-SCEEEEECEETTEECSC-CCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred ------CCEEEEECCC-CCEEEEEeccCCCccCC-CCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 1468888886 6666553211 01111 1223333 6778874 32210 0 0000013579999998
Q ss_pred CCceEEec
Q 006473 218 QFKWQEIK 225 (643)
Q Consensus 218 t~~W~~v~ 225 (643)
+.++..+.
T Consensus 178 ~g~~~~~~ 185 (305)
T 3dr2_A 178 GSPLQRMA 185 (305)
T ss_dssp SCCCEEEE
T ss_pred CCcEEEEe
Confidence 88877764
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=93.31 E-value=1.6 Score=49.45 Aligned_cols=128 Identities=16% Similarity=0.226 Sum_probs=69.1
Q ss_pred CCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCC----------------c----ee
Q 006473 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP----------------R----SA 127 (643)
Q Consensus 68 ~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~p----------------R----s~ 127 (643)
++.-.++...| +++.+++++.. ++.. ....++++|+.+++...+.......| | ..
T Consensus 36 ~~~~~~~~~Sp--dG~~la~~~~~-d~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (741)
T 2ecf_A 36 GPTLMKPKVAP--DGSRVTFLRGK-DSDR--NQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTG 110 (741)
T ss_dssp CCCCEEEEECT--TSSEEEEEECC-SSCT--TEEEEEEEETTTCCEEEEECGGGTC--------------------CCEE
T ss_pred CCCCCCceEec--CCCEEEEEecc-CCCC--cccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccC
Confidence 33444556666 67777776631 2211 13489999999998887754321110 0 11
Q ss_pred eEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCC---cEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeec
Q 006473 128 HQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN---QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYD 200 (643)
Q Consensus 128 ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~---~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~ 200 (643)
...+.+ +++.++++.. ..+|++|+.++ .-..+.. ... ....+.+ +++.++++.
T Consensus 111 v~~~~~SpDg~~l~~~~~------------~~i~~~d~~~~~~~~~~~l~~---~~~--~~~~~~~SPDG~~la~~~--- 170 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG------------GELYLYDLKQEGKAAVRQLTH---GEG--FATDAKLSPKGGFVSFIR--- 170 (741)
T ss_dssp SCCCEECTTSSEEEEEET------------TEEEEEESSSCSTTSCCBCCC---SSS--CEEEEEECTTSSEEEEEE---
T ss_pred cceeEECCCCCEEEEEeC------------CcEEEEECCCCCcceEEEccc---CCc--ccccccCCCCCCEEEEEe---
Confidence 122223 4554555432 57999999887 5443322 111 1222333 555555553
Q ss_pred CCCceeeeccEEEEEcCCCceEEeccC
Q 006473 201 TLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
.+.|+++|+.+.....+...
T Consensus 171 -------~~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 171 -------GRNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp -------TTEEEEEETTTTEEEECCCC
T ss_pred -------CCcEEEEecCCCCEEEeccC
Confidence 13699999998877666543
No 136
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=93.30 E-value=1.5 Score=43.55 Aligned_cols=136 Identities=11% Similarity=0.005 Sum_probs=63.9
Q ss_pred eEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCC
Q 006473 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (643)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (643)
.+.+||+.+........ .... .-.++++. ++.+++.|+.+ ..+.+||+.+..- +.... ..
T Consensus 196 ~i~i~d~~~~~~~~~~~--~h~~-~v~~~~~s~~~~~l~s~s~D---------g~i~iwd~~~~~~--~~~~~-----~~ 256 (340)
T 4aow_A 196 LVKVWNLANCKLKTNHI--GHTG-YLNTVTVSPDGSLCASGGKD---------GQAMLWDLNEGKH--LYTLD-----GG 256 (340)
T ss_dssp CEEEEETTTTEEEEEEC--CCSS-CEEEEEECTTSSEEEEEETT---------CEEEEEETTTTEE--EEEEE-----CS
T ss_pred EEEEEECCCCceeeEec--CCCC-cEEEEEECCCCCEEEEEeCC---------CeEEEEEeccCce--eeeec-----CC
Confidence 47788988776543321 1111 11122222 55677777643 3577888876542 22221 11
Q ss_pred ccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCC-----CCceeeEEEEE-CCeE
Q 006473 236 RSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP-----GPRAGFSMCVH-KKRA 309 (643)
Q Consensus 236 R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P-----~~R~g~s~~~~-~~~i 309 (643)
..-.+++...+..++.|+.++. +.+||+.+..-.......... ....-.++++. +++.
T Consensus 257 ~~v~~~~~~~~~~~~~~~~d~~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 257 DIINALCFSPNRYWLCAATGPS----------------IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp SCEEEEEECSSSSEEEEEETTE----------------EEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred ceEEeeecCCCCceeeccCCCE----------------EEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 1112233334445556665433 667777665432221110000 01111233333 5677
Q ss_pred EEeccccccccCccccccccCCcEEEEECCCC
Q 006473 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
++.||.+ ..|.+||+.++
T Consensus 321 l~sgs~D--------------g~v~iW~~~tG 338 (340)
T 4aow_A 321 LFAGYTD--------------NLVRVWQVTIG 338 (340)
T ss_dssp EEEEETT--------------SCEEEEEEEC-
T ss_pred EEEEeCC--------------CEEEEEeCCCc
Confidence 7777754 34888888765
No 137
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=93.25 E-value=3.7 Score=41.86 Aligned_cols=162 Identities=15% Similarity=0.058 Sum_probs=79.3
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE----CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW----KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC 176 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~----~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~ 176 (643)
..+..||+.+.+....-... .. ...++.+ ++.+++.|+.. ..+.+||+.+.+....-. .
T Consensus 176 ~~v~lwd~~~~~~~~~~~~h--~~--~v~~~~~~~~~~g~~l~sgs~D-----------g~v~~wd~~~~~~~~~~~--~ 238 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFHGH--GA--DVLCLDLAPSETGNTFVSGGCD-----------KKAMVWDMRSGQCVQAFE--T 238 (354)
T ss_dssp SEEEEEETTTCCEEEEEECC--SS--CEEEEEECCCSSCCEEEEEETT-----------SCEEEEETTTCCEEEEEC--C
T ss_pred CcEEEEeCCCCeEEEEEcCC--CC--CeEEEEEEeCCCCCEEEEEeCC-----------CeEEEEECCCCcEEEEec--C
Confidence 35778888877644321111 11 1111222 34677777753 357889998876543321 1
Q ss_pred CCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEc
Q 006473 177 PSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYG 252 (643)
Q Consensus 177 P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~G 252 (643)
... .-.++.+ ++.+++.|+.+ ..+.+||+.+..-..+... .....+...+.+ ++.+++.|
T Consensus 239 h~~--~v~~v~~~p~~~~l~s~s~D---------~~v~lwd~~~~~~~~~~~~-----~~~~~~~~~~~~s~~g~~l~~g 302 (354)
T 2pbi_B 239 HES--DVNSVRYYPSGDAFASGSDD---------ATCRLYDLRADREVAIYSK-----ESIIFGASSVDFSLSGRLLFAG 302 (354)
T ss_dssp CSS--CEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEECC-----TTCCSCEEEEEECTTSSEEEEE
T ss_pred CCC--CeEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcEEEEEcC-----CCcccceeEEEEeCCCCEEEEE
Confidence 111 1122333 45666777743 3577888877643222211 111122222222 66777777
Q ss_pred CCCCCCCCccCCCCCCceeeeEEEEeCCCCeeE-EeccCCCCCCCceeeEEEEE-CCeEEEecccc
Q 006473 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS-KVKKIGMPPGPRAGFSMCVH-KKRALLFGGVV 316 (643)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~-~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~ 316 (643)
+.++. +.+||+.+..-. .+. + ....-.++++. +++.++.|+.+
T Consensus 303 ~~d~~----------------i~vwd~~~~~~~~~l~--~---h~~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 303 YNDYT----------------INVWDVLKGSRVSILF--G---HENRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp ETTSC----------------EEEEETTTCSEEEEEC--C---CSSCEEEEEECTTSSCEEEEETT
T ss_pred ECCCc----------------EEEEECCCCceEEEEE--C---CCCcEEEEEECCCCCEEEEEcCC
Confidence 76654 778887654321 121 1 11112233333 56777777754
No 138
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=93.24 E-value=7.6 Score=39.00 Aligned_cols=211 Identities=10% Similarity=0.054 Sum_probs=108.2
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCCC----CCCc-eeeEEEEE--CCEEEEEe
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNS----PPPR-SAHQAVSW--KNYLYIFG 141 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~----P~pR-s~ha~~~~--~~~iyvfG 141 (643)
.+.+++.+ ++.||+.... .+.|++|++... .-..+..... +... .-..+++. ++.|||..
T Consensus 93 p~gia~d~--~g~l~v~d~~---------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d 161 (329)
T 3fvz_A 93 PHGLSIDT--DGNYWVTDVA---------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD 161 (329)
T ss_dssp EEEEEECT--TSCEEEEETT---------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE
T ss_pred ceEEEECC--CCCEEEEECC---------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe
Confidence 34555554 5667776541 246888888765 2223321100 0111 12233443 57899997
Q ss_pred CccCCCCCCcceecCeEEEEECCCCcEEEeccCCC-----CCCCc-eeEEEEE-C-CEEEEEeeeecCCCceeeeccEEE
Q 006473 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-----PSPRS-GHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYV 213 (643)
Q Consensus 142 G~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-----P~~Rs-~h~~~~~-~-~~lyvfGG~~~~~~~~~~~~dv~~ 213 (643)
+.. .+.+++||.....-..+...+. +.... -+++++- + +.||+.... .+.|.+
T Consensus 162 ~~~----------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~---------~~~I~~ 222 (329)
T 3fvz_A 162 GYC----------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE---------NGRIQC 222 (329)
T ss_dssp CSS----------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT---------TTEEEE
T ss_pred CCC----------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC---------CCEEEE
Confidence 521 2568899865544444432111 11111 2344443 3 799987542 357999
Q ss_pred EEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCC
Q 006473 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP 293 (643)
Q Consensus 214 yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 293 (643)
||+.+.+....-..+ .....-++++...+.+|+..|.... .......++++++.+.+....-..+ .
T Consensus 223 ~~~~~G~~~~~~~~~----~~~~~~~~~~~~pg~~~~~~g~~~v---------~~~~~~~v~~~~~~~g~~~~~~~~~-~ 288 (329)
T 3fvz_A 223 FKTDTKEFVREIKHA----SFGRNVFAISYIPGFLFAVNGKPYF---------GDQEPVQGFVMNFSSGEIIDVFKPV-R 288 (329)
T ss_dssp EETTTCCEEEEECCT----TTTTCEEEEEEETTEEEEEECCCCT---------TCSCCCCEEEEETTTCCEEEEECCS-S
T ss_pred EECCCCcEEEEEecc----ccCCCcceeeecCCEEEEeCCCEEe---------ccCCCcEEEEEEcCCCeEEEEEcCC-C
Confidence 999866654433221 1111222344445777777775332 0122346888998777655542211 0
Q ss_pred CCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECC
Q 006473 294 PGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (643)
Q Consensus 294 P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (643)
.....-+++++. ++.|||.... .+.|++|++.
T Consensus 289 ~~~~~p~~ia~~~dG~lyvad~~--------------~~~I~~~~~~ 321 (329)
T 3fvz_A 289 KHFDMPHDIVASEDGTVYIGDAH--------------TNTVWKFTLT 321 (329)
T ss_dssp SCCSSEEEEEECTTSEEEEEESS--------------SCCEEEEEEE
T ss_pred CccCCeeEEEECCCCCEEEEECC--------------CCEEEEEeCC
Confidence 112223445554 5688887643 2458888764
No 139
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=93.21 E-value=2.7 Score=42.65 Aligned_cols=145 Identities=8% Similarity=0.216 Sum_probs=71.5
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCc
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~ 151 (643)
+...| ++.+++.|+. + +.+.+|+.....+..+.... ........+.+ ++.+++.|+..
T Consensus 67 ~~~sp--~g~~l~s~s~--D-------~~v~iw~~~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~l~s~s~D------- 126 (345)
T 3fm0_A 67 VAWSP--CGNYLASASF--D-------ATTCIWKKNQDDFECVTTLE--GHENEVKSVAWAPSGNLLATCSRD------- 126 (345)
T ss_dssp EEECT--TSSEEEEEET--T-------SCEEEEEECCC-EEEEEEEC--CCSSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEECC--CCCEEEEEEC--C-------CcEEEEEccCCCeEEEEEcc--CCCCCceEEEEeCCCCEEEEEECC-------
Confidence 44444 5667777772 2 35667777777665443221 11111222333 56677777653
Q ss_pred ceecCeEEEEECCCC-cEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC
Q 006473 152 FHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~-~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
..+.+||+.+. .+..+... ......-..+.+ ++.+++.|+.+ ..+.+||..+..|..+....
T Consensus 127 ----~~v~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~s~d---------~~i~~w~~~~~~~~~~~~~~ 191 (345)
T 3fm0_A 127 ----KSVWVWEVDEEDEYECVSVL--NSHTQDVKHVVWHPSQELLASASYD---------DTVKLYREEEDDWVCCATLE 191 (345)
T ss_dssp ----SCEEEEEECTTSCEEEEEEE--CCCCSCEEEEEECSSSSCEEEEETT---------SCEEEEEEETTEEEEEEEEC
T ss_pred ----CeEEEEECCCCCCeEEEEEe--cCcCCCeEEEEECCCCCEEEEEeCC---------CcEEEEEecCCCEEEEEEec
Confidence 34677777654 23322221 111111222333 45666677643 35778888888776554442
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEcCCCCC
Q 006473 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~ 257 (643)
. ....-.+++.. ++.+++.|+.++.
T Consensus 192 ~----h~~~v~~l~~sp~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 192 G----HESTVWSLAFDPSGQRLASCSDDRT 217 (345)
T ss_dssp C----CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred C----CCCceEEEEECCCCCEEEEEeCCCe
Confidence 1 11111222222 5667777777654
No 140
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=93.17 E-value=7.5 Score=38.70 Aligned_cols=118 Identities=12% Similarity=0.053 Sum_probs=68.4
Q ss_pred CCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCcc
Q 006473 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEF 144 (643)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~ 144 (643)
|.+.....+++.+ ++.||+.--. .+.|++||+....-..+.. +..-+.++.. ++.|||.....
T Consensus 29 p~~~~pegia~~~--~g~lyv~d~~---------~~~I~~~d~~g~~~~~~~~-----~~~p~gia~~~dG~l~vad~~~ 92 (306)
T 2p4o_A 29 PVNTFLENLASAP--DGTIFVTNHE---------VGEIVSITPDGNQQIHATV-----EGKVSGLAFTSNGDLVATGWNA 92 (306)
T ss_dssp CTTCCEEEEEECT--TSCEEEEETT---------TTEEEEECTTCCEEEEEEC-----SSEEEEEEECTTSCEEEEEECT
T ss_pred CCCCCcceEEECC--CCCEEEEeCC---------CCeEEEECCCCceEEEEeC-----CCCceeEEEcCCCcEEEEeccC
Confidence 3445566777765 5678887531 2468999988753222221 1233444443 56788875321
Q ss_pred CCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
. -..+++||+.+.+.+.+.. .+..+.....+.+ ++.+|+.-- ....+|++|+.+.
T Consensus 93 ~---------~~~v~~~d~~~g~~~~~~~--~~~~~~~~g~~~~~~~~~~v~d~---------~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 93 D---------SIPVVSLVKSDGTVETLLT--LPDAIFLNGITPLSDTQYLTADS---------YRGAIWLIDVVQP 148 (306)
T ss_dssp T---------SCEEEEEECTTSCEEEEEE--CTTCSCEEEEEESSSSEEEEEET---------TTTEEEEEETTTT
T ss_pred C---------cceEEEEcCCCCeEEEEEe--CCCccccCcccccCCCcEEEEEC---------CCCeEEEEeCCCC
Confidence 0 1248899988888876654 3444555555544 456666421 1357899998764
No 141
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=93.15 E-value=7.9 Score=38.90 Aligned_cols=200 Identities=10% Similarity=0.005 Sum_probs=104.1
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEEeccCCC-
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGC- 176 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~g~- 176 (643)
+.++++|+.+++........ .-..-+.+++. ++.|||.... .+.+.+||+... .-..+...+.
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~--~~~~p~gia~d~~g~l~v~d~~-----------~~~v~~~~~~g~~~~~~~~~~~~~~ 135 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKN--LFYLPHGLSIDTDGNYWVTDVA-----------LHQVFKLDPHSKEGPLLILGRSMQP 135 (329)
T ss_dssp CCEEEECTTTCCEEEEECTT--TCSSEEEEEECTTSCEEEEETT-----------TTEEEEECTTCSSCCSEEESBTTBC
T ss_pred CcEEEEECCCCeEEeccCCC--ccCCceEEEECCCCCEEEEECC-----------CCEEEEEeCCCCeEEEEEecccCCC
Confidence 46999999877765432211 11122333333 5679987653 246889998655 2222322111
Q ss_pred ---CCCCce-eEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCC--CCCc-cceeEEEe-C-
Q 006473 177 ---PSPRSG-HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW--PSPR-SGFQFFVY-Q- 245 (643)
Q Consensus 177 ---P~~Rs~-h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~--P~~R-~~~s~~~~-~- 245 (643)
...... ..+++. ++.||+..++. .+.|.+||+....-..+.....+.. +... .-+++++. +
T Consensus 136 g~~~~~~~~P~~ia~~~~~g~lyv~d~~~--------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~ 207 (329)
T 3fvz_A 136 GSDQNHFCQPTDVAVEPSTGAVFVSDGYC--------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL 207 (329)
T ss_dssp CCSTTCCSSEEEEEECTTTCCEEEEECSS--------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT
T ss_pred CCCccccCCCcEEEEeCCCCeEEEEeCCC--------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC
Confidence 111112 233443 57899987521 3568888865443333322211000 1111 11234443 3
Q ss_pred CEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCcccc
Q 006473 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325 (643)
Q Consensus 246 ~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~ 325 (643)
+.|||....+.. +.+|++.+.+....-.. +.....-.++++..+.+|+..|.....
T Consensus 208 g~l~v~d~~~~~----------------I~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~pg~~~~~~g~~~v~------ 263 (329)
T 3fvz_A 208 DQLCVADRENGR----------------IQCFKTDTKEFVREIKH--ASFGRNVFAISYIPGFLFAVNGKPYFG------ 263 (329)
T ss_dssp TEEEEEETTTTE----------------EEEEETTTCCEEEEECC--TTTTTCEEEEEEETTEEEEEECCCCTT------
T ss_pred CEEEEEECCCCE----------------EEEEECCCCcEEEEEec--cccCCCcceeeecCCEEEEeCCCEEec------
Confidence 899998765433 88999886655443221 112222335555567777777753221
Q ss_pred ccccCCcEEEEECCCCcEEEe
Q 006473 326 MSLFLNELYGFQLDNHRWYPL 346 (643)
Q Consensus 326 ~~~~~ndl~~yd~~t~~W~~l 346 (643)
....+.+++|++.+.+....
T Consensus 264 -~~~~~~v~~~~~~~g~~~~~ 283 (329)
T 3fvz_A 264 -DQEPVQGFVMNFSSGEIIDV 283 (329)
T ss_dssp -CSCCCCEEEEETTTCCEEEE
T ss_pred -cCCCcEEEEEEcCCCeEEEE
Confidence 12245799999888765543
No 142
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.14 E-value=8.7 Score=39.38 Aligned_cols=186 Identities=12% Similarity=0.060 Sum_probs=87.9
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCcee-eEEEEE---CCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSA-HQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLK 174 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~-ha~~~~---~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~ 174 (643)
..+..||+.++.-...-....|..... ...+.+ ++.+++.|+.. ..+.+||+.... -..+..
T Consensus 180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D-----------~~v~~wd~~~~~~~~~~~~~- 247 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD-----------TTVRLWDLRITSRAVRTYHG- 247 (380)
T ss_dssp SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT-----------SCEEEEETTTTCCCCEEECC-
T ss_pred CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC-----------CeEEEEECCCCCcceEEECC-
Confidence 357788888876543322111111111 112222 56788888753 347778875321 111111
Q ss_pred CCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCc-cceeEEEe-CCEEEEE
Q 006473 175 GCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR-SGFQFFVY-QDEVFLY 251 (643)
Q Consensus 175 g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R-~~~s~~~~-~~~iyv~ 251 (643)
..... .+++.. ++..++.|+.+ ..+.+||+.+..-...-........... .-.+++.. ++.+++.
T Consensus 248 --h~~~v-~~v~~~p~~~~l~s~s~D---------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 315 (380)
T 3iz6_a 248 --HEGDI-NSVKFFPDGQRFGTGSDD---------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA 315 (380)
T ss_dssp --CSSCC-CEEEECTTSSEEEEECSS---------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEE
T ss_pred --cCCCe-EEEEEecCCCeEEEEcCC---------CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEE
Confidence 11111 122222 55666777653 3578889887654332221100000000 11122222 6777777
Q ss_pred cCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE-eccCCCCCCCceeeEEEEE-CCeEEEeccccccccCcccccccc
Q 006473 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK-VKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLF 329 (643)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~-l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~ 329 (643)
|+.++. +.+||+.+..-.. +.........+. .++++. ++..++.||.+.
T Consensus 316 g~~dg~----------------i~vwd~~~~~~~~~~~~~~~~h~~~v-~~l~~s~dg~~l~sgs~D~------------ 366 (380)
T 3iz6_a 316 GYSNGD----------------CYVWDTLLAEMVLNLGTLQNSHEGRI-SCLGLSSDGSALCTGSWDK------------ 366 (380)
T ss_dssp ECTTSC----------------EEEEETTTCCEEEEECCSCSSCCCCC-CEEEECSSSSEEEEECTTS------------
T ss_pred EECCCC----------------EEEEECCCCceEEEEecccCCCCCce-EEEEECCCCCEEEEeeCCC------------
Confidence 776655 7888876654332 211100011111 223333 677888887643
Q ss_pred CCcEEEEECCCC
Q 006473 330 LNELYGFQLDNH 341 (643)
Q Consensus 330 ~ndl~~yd~~t~ 341 (643)
.|.+|++...
T Consensus 367 --~i~iW~~~~~ 376 (380)
T 3iz6_a 367 --NLKIWAFSGH 376 (380)
T ss_dssp --CEEEEECCSS
T ss_pred --CEEEEecCCC
Confidence 4777877654
No 143
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=93.14 E-value=1.9 Score=43.96 Aligned_cols=50 Identities=10% Similarity=-0.049 Sum_probs=27.3
Q ss_pred EEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 274 v~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
+.+||+.+..-...-. + . ...-.++++. ++.+++.||.. ..|.+||+.+.
T Consensus 316 i~v~d~~~~~~~~~~~-~--~-~~~v~~~~~s~~~~~l~s~~~d--------------g~i~iw~~~~~ 366 (408)
T 4a11_B 316 IAVYTVYSGEQITMLK-G--H-YKTVDCCVFQSNFQELYSGSRD--------------CNILAWVPSLY 366 (408)
T ss_dssp EEEEETTTCCEEEEEC-C--C-SSCEEEEEEETTTTEEEEEETT--------------SCEEEEEECC-
T ss_pred EEEEECcCCcceeeec-c--C-CCeEEEEEEcCCCCEEEEECCC--------------CeEEEEeCCCC
Confidence 7788877654333221 1 1 1122234444 56777777753 34888888764
No 144
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=93.10 E-value=1.8 Score=44.33 Aligned_cols=146 Identities=11% Similarity=-0.056 Sum_probs=72.6
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE---CCEEEEEeeeecCCCceeeecc
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYND 210 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~---~~~lyvfGG~~~~~~~~~~~~d 210 (643)
++.+++.|+.. ..+.++|+.+++-...-. ..... -.++.+ +..+++.|+.+ ..
T Consensus 138 dg~~l~sgs~d-----------~~i~iwd~~~~~~~~~~~--~h~~~--V~~~~~~~~~~~~l~s~s~D---------~~ 193 (344)
T 4gqb_B 138 SGTQAVSGSKD-----------ICIKVWDLAQQVVLSSYR--AHAAQ--VTCVAASPHKDSVFLSCSED---------NR 193 (344)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCSSC--EEEEEECSSCTTEEEEEETT---------SC
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEc--CcCCc--eEEEEecCCCCCceeeeccc---------cc
Confidence 56677777653 357888998775433211 11111 112222 33567777643 35
Q ss_pred EEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE-e
Q 006473 211 LYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK-V 287 (643)
Q Consensus 211 v~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~-l 287 (643)
|.+||+.+.+-...-... .......+++.. ++.+++.|+.++. +.+||+.+.+-.. +
T Consensus 194 v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~l~sg~~dg~----------------v~~wd~~~~~~~~~~ 253 (344)
T 4gqb_B 194 ILLWDTRCPKPASQIGCS----APGYLPTSLAWHPQQSEVFVFGDENGT----------------VSLVDTKSTSCVLSS 253 (344)
T ss_dssp EEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETTSE----------------EEEEESCC--CCEEE
T ss_pred cccccccccceeeeeecc----eeeccceeeeecCCCCcceEEeccCCc----------------EEEEECCCCcEEEEE
Confidence 788898876543321110 011111122222 5678888877654 6778876543211 1
Q ss_pred ccCCCCCCCceeeEEEEE-C-CeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 288 KKIGMPPGPRAGFSMCVH-K-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 288 ~~~g~~P~~R~g~s~~~~-~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.. ....-.++++. + .++++.|+.. ..|.+||+.+.+
T Consensus 254 ~~-----h~~~v~~v~fsp~g~~~lasgs~D--------------~~i~vwd~~~~~ 291 (344)
T 4gqb_B 254 AV-----HSQCVTGLVFSPHSVPFLASLSED--------------CSLAVLDSSLSE 291 (344)
T ss_dssp EC-----CSSCEEEEEECSSSSCCEEEEETT--------------SCEEEECTTCCE
T ss_pred cC-----CCCCEEEEEEccCCCeEEEEEeCC--------------CeEEEEECCCCc
Confidence 11 01112233443 3 3566666643 348899988765
No 145
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.01 E-value=5.5 Score=44.24 Aligned_cols=116 Identities=14% Similarity=0.164 Sum_probs=63.5
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCCC-CCCce---eeEEEEECCEEEEEeCccCCCCCCccee
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNS-PPPRS---AHQAVSWKNYLYIFGGEFTSPNQERFHH 154 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~-P~pRs---~ha~~~~~~~iyvfGG~~~~~~~~~~~~ 154 (643)
++.||+.+.. +.|+++|..++ .|+.-..... ..+.+ ..+.++.++.||+...
T Consensus 68 ~g~vyv~~~~----------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------------ 125 (582)
T 1flg_A 68 DGVIYVTASY----------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------------ 125 (582)
T ss_dssp TTEEEEEETT----------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------------
T ss_pred CCEEEEEcCC----------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------------
Confidence 7888887651 24899999876 4886543210 00111 1233456888888532
Q ss_pred cCeEEEEECCCCc--EEEeccCCCCCCC--ceeEEEEECC------EEEEEeeeecCCCceeeeccEEEEEcCCCc--eE
Q 006473 155 YKDFWMLDLKTNQ--WEQLNLKGCPSPR--SGHRMVLYKH------KIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQ 222 (643)
Q Consensus 155 ~~dv~~yD~~t~~--W~~~~~~g~P~~R--s~h~~~~~~~------~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~ 222 (643)
-..++.+|..|++ |+.-... +... ...+-++.++ .||+ |..... ......|+.||+.+.+ |+
T Consensus 126 dg~l~AlD~~TG~~~W~~~~~~--~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e---~~~~g~v~alD~~tG~~~W~ 199 (582)
T 1flg_A 126 DASVVALNKNTGKVVWKKKFAD--HGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDE---FGVVGRLFARDPDTGEEIWM 199 (582)
T ss_dssp TTEEEEEESSSCCEEEEEECSC--GGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGG---GCCBCEEEEECTTTCCEEEE
T ss_pred CCEEEEEECCCCCEEeeecCCC--CCcCcccccCCEEeCCCcCCcEEEEE-eccccc---cCCCCEEEEEECCCCCEEee
Confidence 1468999998875 8764321 1111 1112234455 5554 332110 1124579999998765 86
Q ss_pred Ee
Q 006473 223 EI 224 (643)
Q Consensus 223 ~v 224 (643)
.-
T Consensus 200 ~~ 201 (582)
T 1flg_A 200 RP 201 (582)
T ss_dssp EE
T ss_pred cC
Confidence 53
No 146
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=92.98 E-value=1.2 Score=45.55 Aligned_cols=151 Identities=14% Similarity=0.044 Sum_probs=74.6
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv 211 (643)
++.+++.|+.. ..+.+||+.+..-..... .+........... ++.+++.|+.+ ..+
T Consensus 111 ~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v 168 (408)
T 4a11_B 111 DTGMFTSSSFD-----------KTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRG---------PKV 168 (408)
T ss_dssp CTTCEEEEETT-----------SEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESS---------SSE
T ss_pred CCcEEEEEeCC-----------CeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCC---------CeE
Confidence 44566666642 458889998876554433 2222222111111 33466666642 468
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe--eEEe
Q 006473 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKV 287 (643)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l 287 (643)
.+||+.+..-...-.. ....-.++... +..+++.|+.++. +.+||+.+.. ...+
T Consensus 169 ~~~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~ll~~~~~dg~----------------i~i~d~~~~~~~~~~~ 226 (408)
T 4a11_B 169 QLCDLKSGSCSHILQG------HRQEILAVSWSPRYDYILATASADSR----------------VKLWDVRRASGCLITL 226 (408)
T ss_dssp EEEESSSSCCCEEECC------CCSCEEEEEECSSCTTEEEEEETTSC----------------EEEEETTCSSCCSEEC
T ss_pred EEEeCCCcceeeeecC------CCCcEEEEEECCCCCcEEEEEcCCCc----------------EEEEECCCCCcccccc
Confidence 8899876543222111 11111222223 3347888887665 7778875442 2222
Q ss_pred ccCC---------C-CCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 288 KKIG---------M-PPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 288 ~~~g---------~-~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.... . ......-.++++. ++..++.|+.. +.|.+||+.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~vwd~~~~~ 278 (408)
T 4a11_B 227 DQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD--------------NRMRLWNSSNGE 278 (408)
T ss_dssp CTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT--------------SCEEEEETTTCC
T ss_pred cccccccceeeccccccccCceeEEEEcCCCCEEEEecCC--------------CeEEEEECCCCc
Confidence 1100 0 0111112233333 56677777653 348999998764
No 147
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=92.97 E-value=0.67 Score=53.23 Aligned_cols=198 Identities=12% Similarity=0.127 Sum_probs=98.9
Q ss_pred CEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--C--CEEEEEeCccCCCCCCcceecCe
Q 006473 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 82 ~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~--~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
+.+++.|+. + +.+.+||+.++.|..+.... ........+.+ + +.++++|+.. ..
T Consensus 67 ~~~l~s~s~--D-------g~I~vwd~~~~~~~~~~~~~--~h~~~V~~v~~sp~~~~~~l~sgs~d-----------g~ 124 (753)
T 3jro_A 67 GTILASCSY--D-------GKVLIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSD-----------GK 124 (753)
T ss_dssp CSEEEEEET--T-------SCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT-----------SE
T ss_pred CCEEEEEeC--C-------CeEEEEECCCCccccccccc--CCCCCeEEEEECCCCCCCEEEEEeCC-----------Cc
Confidence 667777772 2 46888999999887654322 11122223333 3 6677777742 35
Q ss_pred EEEEECCCCcEEE-eccCCCCCCCceeEEEEE---------------CCEEEEEeeeecCCCceeeeccEEEEEcCCC--
Q 006473 158 FWMLDLKTNQWEQ-LNLKGCPSPRSGHRMVLY---------------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-- 219 (643)
Q Consensus 158 v~~yD~~t~~W~~-~~~~g~P~~Rs~h~~~~~---------------~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~-- 219 (643)
+.+||+.+..-.. ....+.+. .-.++.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 125 I~vwdl~~~~~~~~~~~~~~~~---~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d---------g~I~iwd~~~~~~ 192 (753)
T 3jro_A 125 VSVVEFKENGTTSPIIIDAHAI---GVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQ 192 (753)
T ss_dssp EEEEECCSSSCCCCEEEECCSS---CEEEEEECCCC---------CGGGCCEEEEETT---------SCEEEEEEETTTT
T ss_pred EEEEEeecCCCcceeEeecCCC---ceEEEEecCcccccccccccCCCCCEEEEEECC---------CeEEEEeccCCcc
Confidence 7788877652111 11100111 1112222 24566666643 34777776544
Q ss_pred ceEEeccCCCCCCCCCccceeEEEe-C---CEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe--eEEeccCCCC
Q 006473 220 KWQEIKPRFGSMWPSPRSGFQFFVY-Q---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMP 293 (643)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~-~---~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l~~~g~~ 293 (643)
.+..+..... ....-.+++.. + +.+++.||.++. +.+||+.+.. +...... ..
T Consensus 193 ~~~~~~~~~~----h~~~V~~l~~sp~~~~~~~l~s~s~Dg~----------------I~iwd~~~~~~~~~~~~~~-~~ 251 (753)
T 3jro_A 193 TYVLESTLEG----HSDWVRDVAWSPTVLLRSYLASVSQDRT----------------CIIWTQDNEQGPWKKTLLK-EE 251 (753)
T ss_dssp EEEEEEEECC----CSSCEEEEEECCCCSSSEEEEEEESSSC----------------EEEEEESSSSSCCBCCBSS-SS
T ss_pred cceeeeeecC----CCCcEEEEEeccCCCCCCEEEEEecCCE----------------EEEecCCCCCCcceeEEec-cC
Confidence 3444433311 11111223333 4 788888888765 6677765532 2211110 00
Q ss_pred CCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCC-CcEEEeEe
Q 006473 294 PGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN-HRWYPLEL 348 (643)
Q Consensus 294 P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t-~~W~~l~~ 348 (643)
.....-.++++. ++..++.||.+ +.|.+|++.+ ..|..+..
T Consensus 252 ~~~~~v~~l~~spdg~~l~s~s~D--------------g~I~vwd~~~~~~~~~~~~ 294 (753)
T 3jro_A 252 KFPDVLWRASWSLSGNVLALSGGD--------------NKVTLWKENLEGKWEPAGE 294 (753)
T ss_dssp CCSSCCCCEEECTTTCCEEEECSS--------------SCEECCBCCSSSCCBCCCC
T ss_pred CCCCceEEEEEcCCCCEEEEEcCC--------------CEEEEEecCCCCCcccccc
Confidence 111112233333 56777777753 3488888874 46665544
No 148
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=92.95 E-value=8.5 Score=38.72 Aligned_cols=188 Identities=13% Similarity=0.070 Sum_probs=93.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.+++.||. + ..+.+||..+..-...-.. .......+.+ ++.+++.||.. ..+
T Consensus 66 d~~~l~s~s~--D-------g~v~iWd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~d-----------~~v 121 (340)
T 1got_B 66 DSRLLLSASQ--D-------GKLIIWDSYTTNKVHAIPL----RSSWVMTCAYAPSGNYVACGGLD-----------NIC 121 (340)
T ss_dssp TSSEEEEEET--T-------TEEEEEETTTCCEEEEEEC----SSSCEEEEEECTTSSEEEEEETT-----------CEE
T ss_pred CCCEEEEEeC--C-------CcEEEEECCCCCcceEeec----CCccEEEEEECCCCCEEEEEeCC-----------CeE
Confidence 5677777772 2 3678889877654322111 1111222333 55666777642 356
Q ss_pred EEEECCCCc--EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCc
Q 006473 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (643)
Q Consensus 159 ~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (643)
.+||+.+.. ....................-++. ++.|+. -..+.+||+.+..-...-.. ...
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~---------d~~i~~wd~~~~~~~~~~~~------h~~ 185 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSG---------DTTCALWDIETGQQTTTFTG------HTG 185 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEET---------TSCEEEEETTTTEEEEEECC------CSS
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEEC---------CCcEEEEECCCCcEEEEEcC------CCC
Confidence 778876642 111111000111111111122555 444543 24578889887653322111 111
Q ss_pred cceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEecc
Q 006473 237 SGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGG 314 (643)
Q Consensus 237 ~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG 314 (643)
.-.+++.. ++.+++.|+.++. +.+||+.+..-...-. + ....-.++++. ++.+++.|+
T Consensus 186 ~v~~~~~~~~~~~l~sg~~d~~----------------v~~wd~~~~~~~~~~~-~---h~~~v~~v~~~p~~~~l~s~s 245 (340)
T 1got_B 186 DVMSLSLAPDTRLFVSGACDAS----------------AKLWDVREGMCRQTFT-G---HESDINAICFFPNGNAFATGS 245 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSC----------------EEEEETTTCSEEEEEC-C---CSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCc----------------EEEEECCCCeeEEEEc-C---CcCCEEEEEEcCCCCEEEEEc
Confidence 11223333 6678888887765 7788877654332211 1 11112233443 567777777
Q ss_pred ccccccCccccccccCCcEEEEECCCCc
Q 006473 315 VVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.. ..|.+||+.+.+
T Consensus 246 ~d--------------~~v~iwd~~~~~ 259 (340)
T 1got_B 246 DD--------------ATCRLFDLRADQ 259 (340)
T ss_dssp TT--------------SCEEEEETTTTE
T ss_pred CC--------------CcEEEEECCCCc
Confidence 53 348899987754
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=92.95 E-value=3.4 Score=41.50 Aligned_cols=172 Identities=18% Similarity=0.185 Sum_probs=80.6
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECC-CCcEEEecCCCCCCCceeeEEEEE-C-CEEEEEeCccCCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSP 147 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~-~~~W~~l~s~~~P~pRs~ha~~~~-~-~~iyvfGG~~~~~ 147 (643)
.+.+++.| +++||+.+. + .+.+++|++. +.+...+.....+....-..++.. + ..||+.+....
T Consensus 143 ~~~~~~sp--dg~l~v~~~----~-----~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~-- 209 (347)
T 3hfq_A 143 IHYTDLTP--DNRLAVIDL----G-----SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSS-- 209 (347)
T ss_dssp EEEEEECT--TSCEEEEET----T-----TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT--
T ss_pred ceEEEECC--CCcEEEEeC----C-----CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCC--
Confidence 34466666 556666544 1 1468888888 565554321111111111112222 3 45887654311
Q ss_pred CCCcceecCeEEEEECCCCcEEEeccCC-CCCC---CceeEEEEE---CCEEEEEeeeecCCCceeeeccEEEEEcC-CC
Q 006473 148 NQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSP---RSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QF 219 (643)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~~---Rs~h~~~~~---~~~lyvfGG~~~~~~~~~~~~dv~~yD~~-t~ 219 (643)
.-.+|.++..++.+..+.... .|.. ......+.+ +.+||+.+.. .+.+.+|++. ..
T Consensus 210 -------~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~---------~~~v~v~~~~~~g 273 (347)
T 3hfq_A 210 -------QIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG---------YNTLAVFAVTADG 273 (347)
T ss_dssp -------EEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET---------TTEEEEEEECGGG
T ss_pred -------EEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC---------CCEEEEEEECCCC
Confidence 123455565567765443211 1221 122233333 3467776542 2467788875 23
Q ss_pred ceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 220 KWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
.+..+...+... ..+ ..++.. +..||+.+..... -.+|.+|+.+.+-..+..
T Consensus 274 ~~~~~~~~~~~~-~~~---~~~~~spdg~~l~v~~~~~~~--------------v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 274 HLTLIQQISTEG-DFP---RDFDLDPTEAFVVVVNQNTDN--------------ATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp CEEEEEEEECSS-SCC---CEEEECTTSSEEEEEETTTTE--------------EEEEEECTTTCCEEEEEE
T ss_pred cEEEeEEEecCC-CCc---CeEEECCCCCEEEEEEcCCCc--------------EEEEEEeCCCCeEEeccc
Confidence 455554432100 111 123333 4456665443222 235556888888777654
No 150
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.75 E-value=1.9 Score=43.93 Aligned_cols=213 Identities=9% Similarity=0.067 Sum_probs=98.7
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCE-EEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNY-LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~-iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
..+|.+|+.+++...+... .....+....- ++. |++... .... .....+|.+|+.+..+..+.. ..
T Consensus 168 ~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~-~~~~-----~~~~~l~~~d~~~~~~~~l~~---~~ 235 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHE-GPHD-----LVDARMWLVNEDGSNVRKIKE---HA 235 (396)
T ss_dssp EEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEEC-SCSS-----SCSCCCEEEETTSCCCEESSC---CC
T ss_pred ceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEec-CCCC-----CCCceEEEEECCCCceeEeec---cC
Confidence 4789999999888877532 11222222222 244 444332 1110 112579999998888776643 11
Q ss_pred CCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCC
Q 006473 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSK 256 (643)
Q Consensus 179 ~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~ 256 (643)
+........+ ++..+++.+..... ....|+++|+.+.....+... +. ........++.++++++..
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~----~~~~l~~~d~~~g~~~~l~~~-----~~--~~~~~s~~dg~~l~~~~~~- 303 (396)
T 3c5m_A 236 EGESCTHEFWIPDGSAMAYVSYFKGQ----TDRVIYKANPETLENEEVMVM-----PP--CSHLMSNFDGSLMVGDGCD- 303 (396)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTT----CCEEEEEECTTTCCEEEEEEC-----CS--EEEEEECSSSSEEEEEECC-
T ss_pred CCccccceEECCCCCEEEEEecCCCC----ccceEEEEECCCCCeEEeeeC-----CC--CCCCccCCCCceEEEecCC-
Confidence 1212222333 44444444433221 123499999998887776544 21 1122222155566654422
Q ss_pred CCCCccC-CCCCCceeeeEEEEeCCCCeeEEeccCCCCC-----C-CceeeEEEE-ECCeEEEeccccccccCccccccc
Q 006473 257 EVSTDKN-QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP-----G-PRAGFSMCV-HKKRALLFGGVVDMEMKGDVIMSL 328 (643)
Q Consensus 257 ~~~~~~~-~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P-----~-~R~g~s~~~-~~~~iyvfGG~~~~~~~~~~~~~~ 328 (643)
....... ......-...+|++|+.+.....+....... . .......++ -+++.++|.....
T Consensus 304 ~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~----------- 372 (396)
T 3c5m_A 304 APVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE----------- 372 (396)
T ss_dssp C----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-----------
T ss_pred cceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC-----------
Confidence 1000000 0000012356999999887776664321100 0 000111222 2454444544321
Q ss_pred cCCcEEEEECCCCcEEEeEe
Q 006473 329 FLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 329 ~~ndl~~yd~~t~~W~~l~~ 348 (643)
-...||.+++.+..+..+..
T Consensus 373 ~~~~l~~~~~~~~~~~~~~~ 392 (396)
T 3c5m_A 373 GVPAIYIADVPESYKHLEHH 392 (396)
T ss_dssp SSCEEEEEECCTTCC-----
T ss_pred CCceEEEEEEcccccccccc
Confidence 12469999998887766543
No 151
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=92.69 E-value=5.6 Score=41.39 Aligned_cols=94 Identities=12% Similarity=0.173 Sum_probs=53.8
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
+.|+++|..+++...+-... .....-.++.+ ++.+++.|+.. ..+.+||+.+.+-..... ...
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~--~~~~~V~sv~fspdg~~lasgs~D-----------g~v~iWd~~~~~~~~~~~--~h~ 189 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQME--QPGEYISSVAWIKEGNYLAVGTSS-----------AEVQLWDVQQQKRLRNMT--SHS 189 (420)
T ss_dssp TEEEEEETTTCCEEEEEECC--STTCCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCS
T ss_pred CEEEEEECCCCCEEEEEEec--CCCCcEEEEEECCCCCEEEEEECC-----------CeEEEEEcCCCcEEEEEe--CCC
Confidence 47999999998876553322 11222233334 56677777653 357889998876433221 122
Q ss_pred CCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 179 ~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
.+ ..++.+++.+++.|+.+ ..++.+|.....
T Consensus 190 ~~--v~~~s~~~~~l~sgs~d---------~~i~~~d~~~~~ 220 (420)
T 4gga_A 190 AR--VGSLSWNSYILSSGSRS---------GHIHHHDVRVAE 220 (420)
T ss_dssp SC--EEEEEEETTEEEEEETT---------SEEEEEETTSSS
T ss_pred Cc--eEEEeeCCCEEEEEeCC---------CceeEeeecccc
Confidence 22 23445567777777642 356677766543
No 152
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.55 E-value=11 Score=39.04 Aligned_cols=196 Identities=13% Similarity=0.246 Sum_probs=102.7
Q ss_pred CceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCC-CCC-C-c-------eeeEEEEE----CC
Q 006473 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPP-P-R-------SAHQAVSW----KN 135 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~-~P~-p-R-------s~ha~~~~----~~ 135 (643)
.-+++++.|.+.+.||+.+.. +. +-.-|++.+-...+|+.+..+. .|. + + .-+++++. .+
T Consensus 56 ~v~~i~~dp~~~~~l~~g~~~---g~---~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 129 (394)
T 3b7f_A 56 TIHHIVQDPREPERMLMAART---GH---LGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG 129 (394)
T ss_dssp EEEEEEECSSSTTCEEEEEEC--------CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT
T ss_pred ceEEEEECCCCCCeEEEEecC---CC---CCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC
Confidence 345666665445678876542 11 1125777766778999886431 111 1 1 11223332 46
Q ss_pred EEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCC-CC--------------CCCceeEEEEE---CCEEEEEee
Q 006473 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CP--------------SPRSGHRMVLY---KHKIIVFGG 197 (643)
Q Consensus 136 ~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P--------------~~Rs~h~~~~~---~~~lyvfGG 197 (643)
.||+.+. ..-+|+.+-...+|+.+.... .| ....-|++++. .+.||+..+
T Consensus 130 ~l~~g~~------------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~ 197 (394)
T 3b7f_A 130 TWYAGTS------------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS 197 (394)
T ss_dssp CEEEEEE------------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE
T ss_pred EEEEEec------------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC
Confidence 6777542 135778877778999875310 12 11122344433 256776532
Q ss_pred eecCCCceeeeccEEEEEcCCCceEEeccCCC-CCCCCC-----ccceeEEEe---CCEEEEEcCCCCCCCCccCCCCCC
Q 006473 198 FYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG-SMWPSP-----RSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKG 268 (643)
Q Consensus 198 ~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~-~~~P~~-----R~~~s~~~~---~~~iyv~GG~~~~~~~~~~~~~~~ 268 (643)
. ..|++.+-...+|+.+..... ...|.+ ...++++.. .+.||+..+
T Consensus 198 ~----------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--------------- 252 (394)
T 3b7f_A 198 S----------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--------------- 252 (394)
T ss_dssp T----------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET---------------
T ss_pred C----------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC---------------
Confidence 1 236777666788998854211 111211 223444444 256666321
Q ss_pred ceeeeEEEEeCCCCeeEEeccCCCCCCC--ceeeEEEEE---CCeEEEec
Q 006473 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGP--RAGFSMCVH---KKRALLFG 313 (643)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~l~~~g~~P~~--R~g~s~~~~---~~~iyvfG 313 (643)
..+++.+-...+|+.+... .|.. ..++++++. .+.||+..
T Consensus 253 ---~gl~~s~D~G~tW~~~~~~--l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 253 ---CGIYRMDRREGVWKRIGDA--MPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp ---TEEEEEETTTTEEECGGGG--SCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred ---CeEEEeCCCCCcceECCCC--CCCCCccceEEEEECCCCCCEEEEEe
Confidence 1278888888999998641 2321 345555553 46677753
No 153
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=92.54 E-value=3.7 Score=40.72 Aligned_cols=142 Identities=11% Similarity=0.083 Sum_probs=69.3
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEE-ecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~-l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~ 150 (643)
++.+.| ++.+++.|+. + +.+..||..+..-.. +.... .+ -.++... ++.+++.|+..
T Consensus 18 ~~~fsp--~~~~l~s~~~--d-------g~v~lWd~~~~~~~~~~~~~~--~~--v~~~~~~~~~~~l~s~s~d------ 76 (304)
T 2ynn_A 18 GIDFHP--TEPWVLTTLY--S-------GRVELWNYETQVEVRSIQVTE--TP--VRAGKFIARKNWIIVGSDD------ 76 (304)
T ss_dssp EEEECS--SSSEEEEEET--T-------SEEEEEETTTTEEEEEEECCS--SC--EEEEEEEGGGTEEEEEETT------
T ss_pred EEEECC--CCCEEEEEcC--C-------CcEEEEECCCCceeEEeeccC--Cc--EEEEEEeCCCCEEEEECCC------
Confidence 445555 6777788872 2 367888988775432 22111 11 1122222 45566666642
Q ss_pred cceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC
Q 006473 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (643)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (643)
..+.+||+.+.+-...-. + . ...-.+++.. ++.+++.|+.+ ..+.+||+.+. |.......
T Consensus 77 -----~~i~vwd~~~~~~~~~~~-~-h-~~~v~~~~~~~~~~~l~sgs~D---------~~v~lWd~~~~-~~~~~~~~- 137 (304)
T 2ynn_A 77 -----FRIRVFNYNTGEKVVDFE-A-H-PDYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENN-WALEQTFE- 137 (304)
T ss_dssp -----SEEEEEETTTCCEEEEEE-C-C-SSCEEEEEECSSSSEEEEEETT---------SCEEEEEGGGT-TEEEEEEC-
T ss_pred -----CEEEEEECCCCcEEEEEe-C-C-CCcEEEEEEcCCCCEEEEECCC---------CeEEEEECCCC-cchhhhhc-
Confidence 457788988765332111 1 1 1111222222 45566666643 35777887654 22222211
Q ss_pred CCCCCCccceeEEEe--CCEEEEEcCCCCC
Q 006473 230 SMWPSPRSGFQFFVY--QDEVFLYGGYSKE 257 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~--~~~iyv~GG~~~~ 257 (643)
.....-.+++.. ++.+++.|+.++.
T Consensus 138 ---~h~~~v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 138 ---GHEHFVMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp ---CCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred ---ccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 111111222332 4567888887765
No 154
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=92.53 E-value=9.6 Score=38.31 Aligned_cols=121 Identities=9% Similarity=-0.000 Sum_probs=65.4
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEE-ECCEEEEEeCccCCCCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS-WKNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~-~~~~iyvfGG~~~~~~~ 149 (643)
+.+.+..|. ++.||+++.. .+.|++|++.+++.+.+..+ . .-++++. -++.+||...
T Consensus 51 ~egp~~~~~-~~~l~~~d~~---------~~~i~~~d~~~~~~~~~~~~---~--~v~~i~~~~dg~l~v~~~------- 108 (326)
T 2ghs_A 51 GEGPTFDPA-SGTAWWFNIL---------ERELHELHLASGRKTVHALP---F--MGSALAKISDSKQLIASD------- 108 (326)
T ss_dssp EEEEEEETT-TTEEEEEEGG---------GTEEEEEETTTTEEEEEECS---S--CEEEEEEEETTEEEEEET-------
T ss_pred CcCCeEeCC-CCEEEEEECC---------CCEEEEEECCCCcEEEEECC---C--cceEEEEeCCCeEEEEEC-------
Confidence 344555542 3677777652 24789999998877655432 1 1222332 3678877642
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEe
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (643)
..+++||+.+.+...+.......+......+.+ +++||+ |...... ......||+|+ +.+...+
T Consensus 109 ------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v-~~~~~~~--~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 109 ------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWI-GTMGRKA--ETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp ------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEE-EEEETTC--CTTCEEEEEEE--TTEEEEE
T ss_pred ------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEE-EeCCCcC--CCCceEEEEEe--CCcEEEe
Confidence 348999999998877643211111112222223 567765 3332110 01235789998 4555544
No 155
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=92.51 E-value=5.8 Score=39.28 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=56.6
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCc----EEEecCCCCCCCceeeEEEEE-CCE-EEEEeCccCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE----WKVISSPNSPPPRSAHQAVSW-KNY-LYIFGGEFTS 146 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~----W~~l~s~~~P~pRs~ha~~~~-~~~-iyvfGG~~~~ 146 (643)
++...| ++.+++.|+. -+.+.+|++.+.. ...+.. ....-.+++.. ++. +++.|+..
T Consensus 16 ~~~~s~--~~~~l~~~~~---------d~~v~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d-- 78 (342)
T 1yfq_A 16 DIKIIP--SKSLLLITSW---------DGSLTVYKFDIQAKNVDLLQSLR----YKHPLLCCNFIDNTDLQIYVGTVQ-- 78 (342)
T ss_dssp EEEEEG--GGTEEEEEET---------TSEEEEEEEETTTTEEEEEEEEE----CSSCEEEEEEEESSSEEEEEEETT--
T ss_pred EEEEcC--CCCEEEEEcC---------CCeEEEEEeCCCCccccceeeee----cCCceEEEEECCCCCcEEEEEcCC--
Confidence 444555 5667777762 1467788877765 333321 11122223332 556 66667642
Q ss_pred CCCCcceecCeEEEEEC-CCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 147 PNQERFHHYKDFWMLDL-KTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 147 ~~~~~~~~~~dv~~yD~-~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
..+.+||+ .+.....+... +....-.+++...+.+++.|+.+ ..+.+||+.+
T Consensus 79 ---------g~i~~wd~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~l~s~~~d---------~~i~iwd~~~ 131 (342)
T 1yfq_A 79 ---------GEILKVDLIGSPSFQALTNN--EANLGICRICKYGDDKLIAASWD---------GLIEVIDPRN 131 (342)
T ss_dssp ---------SCEEEECSSSSSSEEECBSC--CCCSCEEEEEEETTTEEEEEETT---------SEEEEECHHH
T ss_pred ---------CeEEEEEeccCCceEecccc--CCCCceEEEEeCCCCEEEEEcCC---------CeEEEEcccc
Confidence 45888998 88776554321 01122223333335555666642 3577777654
No 156
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=92.43 E-value=10 Score=38.39 Aligned_cols=69 Identities=9% Similarity=0.020 Sum_probs=36.2
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC-C-CCCceeEEEEE--CCEEEEEeeeecCCCceeeec
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-P-SPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYN 209 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P-~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~ 209 (643)
++ +++.|+.. ..+.+||+.+......-.... + .....-.++.+ ++.+++.|+.++. ..
T Consensus 197 ~~-~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~------~g 258 (397)
T 1sq9_A 197 RG-LIATGFNN-----------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS------FG 258 (397)
T ss_dssp TS-EEEEECTT-----------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT------EE
T ss_pred Cc-eEEEEeCC-----------CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCC------Cc
Confidence 45 66776642 468899998776443222000 1 00112223333 5566667765311 24
Q ss_pred cEEEEEcCCCc
Q 006473 210 DLYVFDLDQFK 220 (643)
Q Consensus 210 dv~~yD~~t~~ 220 (643)
.+.+||+.+.+
T Consensus 259 ~i~i~d~~~~~ 269 (397)
T 1sq9_A 259 CITLYETEFGE 269 (397)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEECCCCc
Confidence 68899987764
No 157
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=92.41 E-value=4.7 Score=41.66 Aligned_cols=111 Identities=15% Similarity=0.169 Sum_probs=60.6
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
++++.| ++.+++.|+. + +.+.+||+.+.+-...-... ...-.+++.. ++..++.|+..
T Consensus 128 ~v~~s~--dg~~l~s~~~--d-------~~i~iwd~~~~~~~~~~~~h---~~~v~~~~~~p~~~~l~s~s~d------- 186 (393)
T 1erj_A 128 SVCFSP--DGKFLATGAE--D-------RLIRIWDIENRKIVMILQGH---EQDIYSLDYFPSGDKLVSGSGD------- 186 (393)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTTEEEEEECCC---SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEcC--C-------CeEEEEECCCCcEEEEEccC---CCCEEEEEEcCCCCEEEEecCC-------
Confidence 444555 6777777773 2 46888999887654432221 1112223332 44555666542
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
..+.+||+.+........ .. ..-.+++.. ++.+++.|+.+ ..+.+||+.+..-
T Consensus 187 ----~~v~iwd~~~~~~~~~~~--~~--~~v~~~~~~~~~~~~l~~~s~d---------~~v~iwd~~~~~~ 241 (393)
T 1erj_A 187 ----RTVRIWDLRTGQCSLTLS--IE--DGVTTVAVSPGDGKYIAAGSLD---------RAVRVWDSETGFL 241 (393)
T ss_dssp ----SEEEEEETTTTEEEEEEE--CS--SCEEEEEECSTTCCEEEEEETT---------SCEEEEETTTCCE
T ss_pred ----CcEEEEECCCCeeEEEEE--cC--CCcEEEEEECCCCCEEEEEcCC---------CcEEEEECCCCcE
Confidence 457788998876543322 11 111222222 56677777753 3578888877653
No 158
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=92.37 E-value=4.4 Score=40.18 Aligned_cols=151 Identities=8% Similarity=-0.026 Sum_probs=71.8
Q ss_pred ccEEEEECCCCcEEEecCCC--CCCCceeeEEEEECCEEEEEeCccCCCCC-CcceecCeEEEEECCCCcEEEeccCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPN--SPPPRSAHQAVSWKNYLYIFGGEFTSPNQ-ERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~--~P~pRs~ha~~~~~~~iyvfGG~~~~~~~-~~~~~~~dv~~yD~~t~~W~~~~~~g~P 177 (643)
+.|++||+.+++++.+.... .|..|....++.-++.||+.. ....... ........+|+|++. .....+... ..
T Consensus 73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~-~~ 149 (297)
T 3g4e_A 73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSLFPD-HHVKKYFDQ-VD 149 (297)
T ss_dssp TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEECTT-SCEEEEEEE-ES
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEEECC-CCEEEEeec-cc
Confidence 36899999999988775432 122222222222256777643 1111000 000012468899875 333333220 11
Q ss_pred CCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEc--CCCceEEe---ccCCCCCCCCCccceeEEEe-CCEEE
Q 006473 178 SPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEI---KPRFGSMWPSPRSGFQFFVY-QDEVF 249 (643)
Q Consensus 178 ~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~--~t~~W~~v---~~~~~~~~P~~R~~~s~~~~-~~~iy 249 (643)
....++.. ++.||+.... .+.|++|++ .+...... ...+ .....-.++++. ++.||
T Consensus 150 ---~pngi~~spdg~~lyv~~~~---------~~~i~~~~~d~~~G~~~~~~~~~~~~----~~~~~p~g~~~d~~G~lw 213 (297)
T 3g4e_A 150 ---ISNGLDWSLDHKIFYYIDSL---------SYSVDAFDYDLQTGQISNRRSVYKLE----KEEQIPDGMCIDAEGKLW 213 (297)
T ss_dssp ---BEEEEEECTTSCEEEEEEGG---------GTEEEEEEECTTTCCEEEEEEEEECC----GGGCEEEEEEEBTTSCEE
T ss_pred ---cccceEEcCCCCEEEEecCC---------CCcEEEEeccCCCCcccCcEEEEECC----CCCCCCCeeEECCCCCEE
Confidence 11233333 4468776542 356888876 45443221 1110 001111234443 67788
Q ss_pred EEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 250 LYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 250 v~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
|...... .+++||+.+.+...
T Consensus 214 va~~~~~----------------~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 214 VACYNGG----------------RVIRLDPVTGKRLQ 234 (297)
T ss_dssp EEEETTT----------------EEEEECTTTCCEEE
T ss_pred EEEcCCC----------------EEEEEcCCCceEEE
Confidence 7643222 38899998665443
No 159
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=92.33 E-value=5.2 Score=40.73 Aligned_cols=136 Identities=14% Similarity=0.014 Sum_probs=70.2
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEE-E--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-Y--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~-~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (643)
..+.+||+.+.+....-. ...... .++.+ . ++.+++.|+.+ ..+.+||+.+.+....-..
T Consensus 176 ~~v~lwd~~~~~~~~~~~--~h~~~v-~~~~~~~~~~g~~l~sgs~D---------g~v~~wd~~~~~~~~~~~~----- 238 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFH--GHGADV-LCLDLAPSETGNTFVSGGCD---------KKAMVWDMRSGQCVQAFET----- 238 (354)
T ss_dssp SEEEEEETTTCCEEEEEE--CCSSCE-EEEEECCCSSCCEEEEEETT---------SCEEEEETTTCCEEEEECC-----
T ss_pred CcEEEEeCCCCeEEEEEc--CCCCCe-EEEEEEeCCCCCEEEEEeCC---------CeEEEEECCCCcEEEEecC-----
Confidence 457788988776433211 111111 11112 1 34677777753 4588899887764332211
Q ss_pred CCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEE-EEE-CCeE
Q 006473 233 PSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM-CVH-KKRA 309 (643)
Q Consensus 233 P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~-~~~-~~~i 309 (643)
....-.+++.. ++.+++.|+.++. +.+||+.+..-..+-.. .....+.+. ++. ++.+
T Consensus 239 -h~~~v~~v~~~p~~~~l~s~s~D~~----------------v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~ 298 (354)
T 2pbi_B 239 -HESDVNSVRYYPSGDAFASGSDDAT----------------CRLYDLRADREVAIYSK---ESIIFGASSVDFSLSGRL 298 (354)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSE
T ss_pred -CCCCeEEEEEeCCCCEEEEEeCCCe----------------EEEEECCCCcEEEEEcC---CCcccceeEEEEeCCCCE
Confidence 11111122222 5667788887665 77888876643322211 112223333 333 5677
Q ss_pred EEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
++.|+.. +.|.+||+.+..
T Consensus 299 l~~g~~d--------------~~i~vwd~~~~~ 317 (354)
T 2pbi_B 299 LFAGYND--------------YTINVWDVLKGS 317 (354)
T ss_dssp EEEEETT--------------SCEEEEETTTCS
T ss_pred EEEEECC--------------CcEEEEECCCCc
Confidence 7777643 358999987654
No 160
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=92.25 E-value=8.7 Score=37.14 Aligned_cols=198 Identities=10% Similarity=-0.042 Sum_probs=107.6
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~ 149 (643)
+.+++.+. ++.||+.-. + .+.+++|++....-..+.... . ..-+.+++. ++.||+.-..
T Consensus 39 ~gi~~d~~-~~~ly~~d~----~-----~~~I~~~~~~g~~~~~~~~~~--~-~~p~~ia~d~~~~~lyv~d~~------ 99 (267)
T 1npe_A 39 IGLAFDCV-DKVVYWTDI----S-----EPSIGRASLHGGEPTTIIRQD--L-GSPEGIALDHLGRTIFWTDSQ------ 99 (267)
T ss_dssp EEEEEETT-TTEEEEEET----T-----TTEEEEEESSSCCCEEEECTT--C-CCEEEEEEETTTTEEEEEETT------
T ss_pred EEEEEecC-CCEEEEEEC----C-----CCEEEEEecCCCCcEEEEECC--C-CCccEEEEEecCCeEEEEECC------
Confidence 45555543 467887654 1 257899999876544433221 1 122444443 6799998642
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
.+.++++++....-..+...+. ..-..+++. +++||+..... ..+.++++++....-..+...
T Consensus 100 -----~~~I~~~~~~g~~~~~~~~~~~---~~P~~i~vd~~~g~lyv~~~~~-------~~~~I~~~~~dg~~~~~~~~~ 164 (267)
T 1npe_A 100 -----LDRIEVAKMDGTQRRVLFDTGL---VNPRGIVTDPVRGNLYWTDWNR-------DNPKIETSHMDGTNRRILAQD 164 (267)
T ss_dssp -----TTEEEEEETTSCSCEEEECSSC---SSEEEEEEETTTTEEEEEECCS-------SSCEEEEEETTSCCCEEEECT
T ss_pred -----CCEEEEEEcCCCCEEEEEECCC---CCccEEEEeeCCCEEEEEECCC-------CCcEEEEEecCCCCcEEEEEC
Confidence 2568899987554333322111 112344444 68899874321 024688888765433333221
Q ss_pred CCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE
Q 006473 228 FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~ 305 (643)
.. ..-..+++. ++.||+.-... +.++++++....-..+...+. .| +++++.
T Consensus 165 -----~~-~~P~gia~d~~~~~lyv~d~~~----------------~~I~~~~~~g~~~~~~~~~~~--~P---~gi~~d 217 (267)
T 1npe_A 165 -----NL-GLPNGLTFDAFSSQLCWVDAGT----------------HRAECLNPAQPGRRKVLEGLQ--YP---FAVTSY 217 (267)
T ss_dssp -----TC-SCEEEEEEETTTTEEEEEETTT----------------TEEEEEETTEEEEEEEEECCC--SE---EEEEEE
T ss_pred -----CC-CCCcEEEEcCCCCEEEEEECCC----------------CEEEEEecCCCceEEEecCCC--Cc---eEEEEe
Confidence 11 112233443 57888875433 348888887543322222111 12 356667
Q ss_pred CCeEEEeccccccccCccccccccCCcEEEEECCCCcEE
Q 006473 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (643)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (643)
++.||+.-.. .+.|++||+.+.+-.
T Consensus 218 ~~~lyva~~~--------------~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 218 GKNLYYTDWK--------------TNSVIAMDLAISKEM 242 (267)
T ss_dssp TTEEEEEETT--------------TTEEEEEETTTTEEE
T ss_pred CCEEEEEECC--------------CCeEEEEeCCCCCce
Confidence 8889986432 356999999876543
No 161
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=92.22 E-value=4.9 Score=40.37 Aligned_cols=158 Identities=9% Similarity=0.113 Sum_probs=77.9
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCC--CcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeec
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT--NQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYN 209 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t--~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~ 209 (643)
++.+++.|+.. ..+.+||+.. ..+..+.. +..-...-.++.+ ++.+++.|+.+ .
T Consensus 118 ~g~~las~s~D-----------~~v~iwd~~~~~~~~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~D---------~ 175 (330)
T 2hes_X 118 DGYYLATCSRD-----------KSVWIWETDESGEEYECISV--LQEHSQDVKHVIWHPSEALLASSSYD---------D 175 (330)
T ss_dssp TSCEEEEEETT-----------SCEEEEECCTTCCCCEEEEE--ECCCSSCEEEEEECSSSSEEEEEETT---------S
T ss_pred CCCEEEEEeCC-----------CEEEEEeccCCCCCeEEEEE--eccCCCceEEEEECCCCCEEEEEcCC---------C
Confidence 45666677643 3467778732 23443322 1111111222333 45666777753 3
Q ss_pred cEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-C--CEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC------
Q 006473 210 DLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-Q--DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR------ 280 (643)
Q Consensus 210 dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~--~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~------ 280 (643)
.+.+||..+..|..+..... ....-.++... + +.+++.|+.++. +.+||+.
T Consensus 176 ~i~iW~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~s~D~~----------------v~iw~~~~~~~~~ 235 (330)
T 2hes_X 176 TVRIWKDYDDDWECVAVLNG----HEGTVWSSDFDKTEGVFRLCSGSDDST----------------VRVWKYMGDDEDD 235 (330)
T ss_dssp CEEEEEEETTEEEEEEEECC----CSSCEEEEEECCSSSSCEEEEEETTSC----------------EEEEEEEEECTTS
T ss_pred eEEEEECCCCCeeEEEEccC----CCCcEEEEEecCCCCeeEEEEEeCCCe----------------EEEEEecCCCccc
Confidence 46677777776766654421 11111122222 2 345667776654 3334332
Q ss_pred CCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 281 TWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 281 t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
...|..+..... .....-.+++...+.+++.||.. +.|.+||+.+..|..+..
T Consensus 236 ~~~~~~~~~~~~-~h~~~v~~v~~s~~~~l~s~~~d--------------g~v~iw~~~~~~~~~~~~ 288 (330)
T 2hes_X 236 QQEWVCEAILPD-VHKRQVYNVAWGFNGLIASVGAD--------------GVLAVYEEVDGEWKVFAK 288 (330)
T ss_dssp CEEEEEEEECCS-CCSSCEEEEEECTTSCEEEEETT--------------SCEEEEEEETTEEEEEEE
T ss_pred cceeEEeeeccc-ccccceEEEEEcCCCEEEEEeCC--------------CEEEEEEcCCCceEEEec
Confidence 234555443211 01222334444455566777653 348889988888876544
No 162
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=92.21 E-value=1.4 Score=46.56 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=28.5
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN 166 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~ 166 (643)
.|.+||+.++....+..... ......++... ++.+++.|+.. ..+.+||+...
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~d-----------g~i~~wd~~~~ 241 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSDT-INIWFCSLDVSASSRMVVTGDNV-----------GNVILLNMDGK 241 (435)
T ss_dssp CEEEEETTSCEEEEEECCSS-CSCCCCCEEEETTTTEEEEECSS-----------SBEEEEESSSC
T ss_pred EEEEeeccCCceeEEeccCC-CCccEEEEEECCCCCEEEEEeCC-----------CcEeeeccCcc
Confidence 46677777766655543321 11112222232 56677777753 35778887654
No 163
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=92.18 E-value=6.2 Score=41.13 Aligned_cols=64 Identities=16% Similarity=0.043 Sum_probs=34.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv 211 (643)
++..++.|+.. ..+.+||+.+......-. + . .....++.+ ++.+++.|+.+ ..+
T Consensus 203 ~~~~l~s~s~D-----------~~i~~wd~~~~~~~~~~~-~-h--~~~v~~~~~~~~g~~l~s~s~D---------~~v 258 (410)
T 1vyh_C 203 NGDHIVSASRD-----------KTIKMWEVQTGYCVKTFT-G-H--REWVRMVRPNQDGTLIASCSND---------QTV 258 (410)
T ss_dssp SSSEEEEEETT-----------SEEEEEETTTCCEEEEEE-C-C--SSCEEEEEECTTSSEEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEe-C-C--CccEEEEEECCCCCEEEEEcCC---------CeE
Confidence 45566666642 457888988776432211 1 1 111122223 45667777643 357
Q ss_pred EEEEcCCCce
Q 006473 212 YVFDLDQFKW 221 (643)
Q Consensus 212 ~~yD~~t~~W 221 (643)
.+||+.+...
T Consensus 259 ~vwd~~~~~~ 268 (410)
T 1vyh_C 259 RVWVVATKEC 268 (410)
T ss_dssp EEEETTTCCE
T ss_pred EEEECCCCce
Confidence 7778776554
No 164
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=91.93 E-value=8.2 Score=42.71 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=60.6
Q ss_pred eccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeE
Q 006473 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (643)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (643)
...+++.|........+... +.++.-|.+... +..+|+.... .+.+.++|+.+.+-.
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i-----~~~~~~~d~~~~pdgr~~~va~~~----------------sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEI-----SAERFLHDGGLDGSHRYFITAANA----------------RNKLVVIDTKEGKLV 377 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEE-----ECCSSEEEEEECTTSCEEEEEEGG----------------GTEEEEEETTTTEEE
T ss_pred CCeEEEEecCCCccceeeee-----eccccccCceECCCCCEEEEEeCC----------------CCeEEEEECCCCcEE
Confidence 46788888877665555444 344444544444 3344443322 245888999988755
Q ss_pred EeccC-CCCCCCceeeEEEEE--CCeEEEeccccccccCccccccccCCcEEEEECCCCc-----EEEeEe
Q 006473 286 KVKKI-GMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR-----WYPLEL 348 (643)
Q Consensus 286 ~l~~~-g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~-----W~~l~~ 348 (643)
..-.. +..|.+..|... ++ .+.+|+.+-.. .+.|.++|+.+.. |..+..
T Consensus 378 ~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g-------------~~~Vsvid~~~~~~~~~~~kvv~~ 434 (567)
T 1qks_A 378 AIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMG-------------DDSVALIGTDPEGHPDNAWKILDS 434 (567)
T ss_dssp EEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSS-------------SSEEEEEECCTTTCTTTBTSEEEE
T ss_pred EEEeccCcCCCCccceee-ECCCCCcEEEeCCCC-------------CCeEEEecCCCCCCccccCEEEEE
Confidence 54444 455665445443 34 35676655321 2458888887632 776654
No 165
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=91.86 E-value=7 Score=40.56 Aligned_cols=194 Identities=8% Similarity=0.081 Sum_probs=101.5
Q ss_pred cEEEEECCC--CcEEEecCCCCCCCceeeEEEEE---CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCC-
Q 006473 102 DLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG- 175 (643)
Q Consensus 102 dv~~yd~~~--~~W~~l~s~~~P~pRs~ha~~~~---~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g- 175 (643)
-+++|+... .+|..+... +....-++++.. .+.||+.+.... .-.-|++.+-...+|+.+....
T Consensus 32 Gl~~~~~~~~g~~W~~~~~~--~~~~~v~~i~~dp~~~~~l~~g~~~g~--------~g~gl~~s~D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGPV--FLGHTIHHIVQDPREPERMLMAARTGH--------LGPTVFRSDDGGGNWTEATRPPA 101 (394)
T ss_dssp EEEEEEECTTSCSEEEEEEE--STTSEEEEEEECSSSTTCEEEEEEC----------CCEEEEEESSTTSCCEECSBCCC
T ss_pred ceEEEECCCCCCCceECCcc--CCCCceEEEEECCCCCCeEEEEecCCC--------CCccEEEeCCCCCCceECCcccc
Confidence 367777655 689976421 122334555544 467887653210 0024777766678999886421
Q ss_pred CCCC--C-----cee--EEEEE----CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCC-----------
Q 006473 176 CPSP--R-----SGH--RMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM----------- 231 (643)
Q Consensus 176 ~P~~--R-----s~h--~~~~~----~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~----------- 231 (643)
.+.. + ..+ ++++. .+.||+.+. ...|++.+-...+|+.+.......
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~----------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~ 171 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS----------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQD 171 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE----------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC--
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEec----------CCcEEEEcCCCCCeEECcCccCCcccccccccccc
Confidence 1211 1 112 23332 466776432 235777777778899886421000
Q ss_pred -CCCCccceeEEEe---CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCC---CCCCC-----cee
Q 006473 232 -WPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG---MPPGP-----RAG 299 (643)
Q Consensus 232 -~P~~R~~~s~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g---~~P~~-----R~g 299 (643)
.+....-+++++. .+.|||..+. .-+++.+-...+|+.+.... ..|.+ ...
T Consensus 172 g~~~~~~i~~i~~d~~~~~~l~vg~~~-----------------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~ 234 (394)
T 3b7f_A 172 GTPDGPKMHSILVDPRDPKHLYIGMSS-----------------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDP 234 (394)
T ss_dssp --CCCCEEEEEEECTTCTTCEEEEEET-----------------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCE
T ss_pred CCCCCCceeEEEECCCCCCEEEEEECC-----------------CCEEEECCCCCCceECCCCccccccCCCccccCcce
Confidence 0111122344433 3456664321 12677777788999885311 11211 234
Q ss_pred eEEEEEC---CeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 300 FSMCVHK---KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 300 ~s~~~~~---~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+++++.. +.||+ |.. ..||+++-...+|..+..
T Consensus 235 ~~i~~~~~~~~~l~v-g~~---------------~gl~~s~D~G~tW~~~~~ 270 (394)
T 3b7f_A 235 HCVVQHPAAPDILYQ-QNH---------------CGIYRMDRREGVWKRIGD 270 (394)
T ss_dssp EEEEECSSSTTEEEE-EET---------------TEEEEEETTTTEEECGGG
T ss_pred eEEEECCCCCCEEEE-EcC---------------CeEEEeCCCCCcceECCC
Confidence 5555542 55665 321 238888878889988753
No 166
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=91.73 E-value=0.7 Score=47.20 Aligned_cols=113 Identities=14% Similarity=0.202 Sum_probs=47.7
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCc-EEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE-WKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~-W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~ 149 (643)
++...| ++.+++.|+. + +.+.+||+.+.. |..+.... .... ....+.+ ++.+++.|+..
T Consensus 60 ~~~~s~--~~~~l~s~s~--d-------~~v~vwd~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~~~~l~~~~~d----- 121 (377)
T 3dwl_C 60 CVDWAP--KSNRIVTCSQ--D-------RNAYVYEKRPDGTWKQTLVLL-RLNR-AATFVRWSPNEDKFAVGSGA----- 121 (377)
T ss_dssp EEEECT--TTCCEEEEET--T-------SSEEEC------CCCCEEECC-CCSS-CEEEEECCTTSSCCEEEESS-----
T ss_pred EEEEeC--CCCEEEEEeC--C-------CeEEEEEcCCCCceeeeeEec-ccCC-ceEEEEECCCCCEEEEEecC-----
Confidence 344444 5667777772 2 367888888776 44332211 0111 1222223 45666666642
Q ss_pred CcceecCeEEEEECCCCc-EEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 150 ERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
..+.+||+.+.. |..+.....+....-.+++.. ++.+++.|+.+ ..+.+||+.+
T Consensus 122 ------~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~ 177 (377)
T 3dwl_C 122 ------RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD---------RKAYVLSAYV 177 (377)
T ss_dssp ------SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS---------SCEEEEEECC
T ss_pred ------CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC---------CEEEEEEEEe
Confidence 346677776654 322222111112222222222 45667777653 3577777754
No 167
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=91.73 E-value=3.6 Score=41.05 Aligned_cols=99 Identities=11% Similarity=0.035 Sum_probs=51.2
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
+.|++||+.+.....+.... +....-..++.. ++.||+........ .....+|+||+.+.+...+... ..
T Consensus 112 ~~i~~~d~~~~~~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~-~~-- 182 (333)
T 2dg1_A 112 GGIFAATENGDNLQDIIEDL-STAYCIDDMVFDSKGGFYFTDFRGYST-----NPLGGVYYVSPDFRTVTPIIQN-IS-- 182 (333)
T ss_dssp CEEEEECTTSCSCEEEECSS-SSCCCEEEEEECTTSCEEEEECCCBTT-----BCCEEEEEECTTSCCEEEEEEE-ES--
T ss_pred ceEEEEeCCCCEEEEEEccC-ccCCcccceEECCCCCEEEEecccccc-----CCCceEEEEeCCCCEEEEeecC-CC--
Confidence 46899999888765332211 111222223333 57788765321110 0135799999987776655321 11
Q ss_pred CceeEEEEE-C-CEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 180 RSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 180 Rs~h~~~~~-~-~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
..+.++.. + +.||+.... .+.|++||+.+
T Consensus 183 -~~~~i~~~~dg~~l~v~~~~---------~~~i~~~d~~~ 213 (333)
T 2dg1_A 183 -VANGIALSTDEKVLWVTETT---------ANRLHRIALED 213 (333)
T ss_dssp -SEEEEEECTTSSEEEEEEGG---------GTEEEEEEECT
T ss_pred -cccceEECCCCCEEEEEeCC---------CCeEEEEEecC
Confidence 11223332 3 357775431 35688998854
No 168
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=91.71 E-value=2.5 Score=41.84 Aligned_cols=111 Identities=9% Similarity=0.138 Sum_probs=54.3
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE----CCEEEEEeCccCCCCC
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW----KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~----~~~iyvfGG~~~~~~~ 149 (643)
+++.| ++++++.|+. + +.+.+|++.....+.+..... ... ....+.+ .+.+++.|+..
T Consensus 15 ~~~s~--~g~~las~s~--D-------~~v~iw~~~~~~~~~~~~l~g-H~~-~V~~v~~s~~~~g~~l~s~s~D----- 76 (297)
T 2pm7_B 15 AVMDY--YGKRMATCSS--D-------KTIKIFEVEGETHKLIDTLTG-HEG-PVWRVDWAHPKFGTILASCSYD----- 76 (297)
T ss_dssp EEECT--TSSEEEEEET--T-------SCEEEEEBCSSCBCCCEEECC-CSS-CEEEEEECCGGGCSEEEEEETT-----
T ss_pred EEECC--CCCEEEEEeC--C-------CEEEEEecCCCCcEEEEEEcc-ccC-CeEEEEecCCCcCCEEEEEcCC-----
Confidence 34444 5777888872 2 357788876543221111100 011 1122222 15677777643
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEEC----CEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK----HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~----~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
..+.++|+.+..|..+... ......-.++.+. +.+++.|+.+ ..+.+||+.+.
T Consensus 77 ------~~v~iWd~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~g~~l~s~s~d---------~~v~~wd~~~~ 133 (297)
T 2pm7_B 77 ------GKVMIWKEENGRWSQIAVH--AVHSASVNSVQWAPHEYGPMLLVASSD---------GKVSVVEFKEN 133 (297)
T ss_dssp ------TEEEEEEBSSSCBCCCEEE--CCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEEBCSS
T ss_pred ------CEEEEEEcCCCceEEEEEe--ecCCCceeEEEeCcCCCCcEEEEEECC---------CcEEEEEecCC
Confidence 3577888887776544321 1111112233331 4566666642 35667777654
No 169
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=91.70 E-value=7.3 Score=43.69 Aligned_cols=94 Identities=12% Similarity=0.092 Sum_probs=49.9
Q ss_pred ccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 006473 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 209 ~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (643)
..|.+||+.+.+-...-.. ....-.+++.. ++.+++.||.++. +.++|+.+.+-...
T Consensus 541 ~~v~vwd~~~~~~~~~~~~------h~~~v~~v~~spdg~~l~sg~~Dg~----------------i~iwd~~~~~~~~~ 598 (694)
T 3dm0_A 541 KTVKVWNLSNCKLRSTLAG------HTGYVSTVAVSPDGSLCASGGKDGV----------------VLLWDLAEGKKLYS 598 (694)
T ss_dssp SCEEEEETTTCCEEEEECC------CSSCEEEEEECTTSSEEEEEETTSB----------------CEEEETTTTEEEEC
T ss_pred CeEEEEECCCCcEEEEEcC------CCCCEEEEEEeCCCCEEEEEeCCCe----------------EEEEECCCCceEEE
Confidence 4578888877653322111 11111222333 6778888887765 66788776643221
Q ss_pred ccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcE
Q 006473 288 KKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 288 ~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (643)
. .....-+++++..+..++++|.. +.|.+||+.+..-
T Consensus 599 --~---~~~~~v~~~~~sp~~~~l~~~~~--------------~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 599 --L---EANSVIHALCFSPNRYWLCAATE--------------HGIKIWDLESKSI 635 (694)
T ss_dssp --C---BCSSCEEEEEECSSSSEEEEEET--------------TEEEEEETTTTEE
T ss_pred --e---cCCCcEEEEEEcCCCcEEEEEcC--------------CCEEEEECCCCCC
Confidence 1 11222345555544445555432 3489999987643
No 170
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=91.66 E-value=7.3 Score=37.76 Aligned_cols=186 Identities=8% Similarity=0.031 Sum_probs=85.8
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++.+++.|+. -+.+.+||+.+..-....... ...-.+++.. ++.+++.|+.. ..+.
T Consensus 28 ~~~~l~s~~~---------dg~v~vw~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d-----------g~i~ 84 (313)
T 3odt_A 28 DDSKVASVSR---------DGTVRLWSKDDQWLGTVVYTG---QGFLNSVCYDSEKELLLFGGKD-----------TMIN 84 (313)
T ss_dssp ETTEEEEEET---------TSEEEEEEESSSEEEEEEEEC---SSCEEEEEEETTTTEEEEEETT-----------SCEE
T ss_pred CCCEEEEEEc---------CCcEEEEECCCCEEEEEeecC---CccEEEEEECCCCCEEEEecCC-----------CeEE
Confidence 4566777772 246888898776544332211 1112222233 56666777643 2355
Q ss_pred EEECCCCc-EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccc
Q 006473 160 MLDLKTNQ-WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (643)
Q Consensus 160 ~yD~~t~~-W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~ 238 (643)
.|++.... ...+.. .......-.++.+++.+++.|+.+ ..+.+||.....+.. ... ..+...
T Consensus 85 ~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~-~~~-----~~~v~~ 147 (313)
T 3odt_A 85 GVPLFATSGEDPLYT--LIGHQGNVCSLSFQDGVVISGSWD---------KTAKVWKEGSLVYNL-QAH-----NASVWD 147 (313)
T ss_dssp EEETTCCTTSCC-CE--ECCCSSCEEEEEEETTEEEEEETT---------SEEEEEETTEEEEEE-ECC-----SSCEEE
T ss_pred EEEeeecCCCCcccc--hhhcccCEEEEEecCCEEEEEeCC---------CCEEEEcCCcEEEec-ccC-----CCceeE
Confidence 66654421 111111 111112222333455566666642 356777732221111 111 122222
Q ss_pred eeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccc
Q 006473 239 FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVD 317 (643)
Q Consensus 239 ~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~ 317 (643)
..+...++.+++.|+.++. +.+||..... ..+.. +....-.++++. ++. ++.|+..
T Consensus 148 ~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~-~~~~~----~~~~~i~~~~~~~~~~-~~~~~~d- 204 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKT----------------IKLWQNDKVI-KTFSG----IHNDVVRHLAVVDDGH-FISCSND- 204 (313)
T ss_dssp EEEEETTTTEEEEEETTSC----------------EEEEETTEEE-EEECS----SCSSCEEEEEEEETTE-EEEEETT-
T ss_pred EEEccCCCCEEEEEECCCC----------------EEEEecCceE-EEEec----cCcccEEEEEEcCCCe-EEEccCC-
Confidence 2223326667777777655 6677733221 11111 112222334443 566 6666643
Q ss_pred cccCccccccccCCcEEEEECCCCc
Q 006473 318 MEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 318 ~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
..|.+||+.+.+
T Consensus 205 -------------g~i~i~d~~~~~ 216 (313)
T 3odt_A 205 -------------GLIKLVDMHTGD 216 (313)
T ss_dssp -------------SEEEEEETTTCC
T ss_pred -------------CeEEEEECCchh
Confidence 358999988654
No 171
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=91.60 E-value=7.4 Score=43.81 Aligned_cols=200 Identities=12% Similarity=0.094 Sum_probs=100.0
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCC--CCcceecCeEEEEECCCCcE--EEeccC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN--QERFHHYKDFWMLDLKTNQW--EQLNLK 174 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~--~~~~~~~~dv~~yD~~t~~W--~~~~~~ 174 (643)
..|+++|+.+++... ....+... +..+++ +++.++++....... .........+|++++.+..- ..+..
T Consensus 147 ~~i~v~dl~tg~~~~--~~~~~~~~--~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~- 221 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSK--VDVIEGGK--YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE- 221 (695)
T ss_dssp CEEEEEETTTCCBCS--SCCBSCCT--TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC-
T ss_pred EEEEEEECCCCCCcC--CcccCccc--ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe-
Confidence 479999999887531 11111111 122233 455555554322100 00011346799999988763 22222
Q ss_pred CCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEc
Q 006473 175 GCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (643)
Q Consensus 175 g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~G 252 (643)
.+........+.+ +++.++++..... ..+.+|+++..+..|..+... .... ...+..++.||+..
T Consensus 222 -~~~~~~~~~~~~~SpDG~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~l~~~-----~~~~--~~~~~~~g~l~~~s 288 (695)
T 2bkl_A 222 -RTGDPTTFLQSDLSRDGKYLFVYILRGW-----SENDVYWKRPGEKDFRLLVKG-----VGAK--YEVHAWKDRFYVLT 288 (695)
T ss_dssp -CCCCTTCEEEEEECTTSCCEEEEEEETT-----TEEEEEEECTTCSSCEEEEEC-----SSCC--EEEEEETTEEEEEE
T ss_pred -cCCCCEEEEEEEECCCCCEEEEEEeCCC-----CceEEEEEcCCCCceEEeecC-----CCce--EEEEecCCcEEEEE
Confidence 1221111222333 4454455443321 246788888877788888654 1111 12222455566664
Q ss_pred CCCCCCCCccCCCCCCceeeeEEEEeCCCCe---eEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCcccccccc
Q 006473 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE---WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLF 329 (643)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~---W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~ 329 (643)
.... ....++++|+.+.. |..+.... + ...-.++++.++++++......
T Consensus 289 ~~~~-------------~~~~l~~~d~~~~~~~~~~~l~~~~--~-~~~l~~~~~~~~~lv~~~~~dg------------ 340 (695)
T 2bkl_A 289 DEGA-------------PRQRVFEVDPAKPARASWKEIVPED--S-SASLLSVSIVGGHLSLEYLKDA------------ 340 (695)
T ss_dssp CTTC-------------TTCEEEEEBTTBCSGGGCEEEECCC--S-SCEEEEEEEETTEEEEEEEETT------------
T ss_pred CCCC-------------CCCEEEEEeCCCCCccCCeEEecCC--C-CCeEEEEEEECCEEEEEEEECC------------
Confidence 4321 12458899986654 88875421 1 1222334445888877765432
Q ss_pred CCcEEEEECCCCcEEEe
Q 006473 330 LNELYGFQLDNHRWYPL 346 (643)
Q Consensus 330 ~ndl~~yd~~t~~W~~l 346 (643)
...|+.+++....-..+
T Consensus 341 ~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 341 TSEVRVATLKGKPVRTV 357 (695)
T ss_dssp EEEEEEEETTCCEEEEC
T ss_pred EEEEEEEeCCCCeeEEe
Confidence 34577888755433333
No 172
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=91.60 E-value=4.9 Score=40.84 Aligned_cols=205 Identities=14% Similarity=0.109 Sum_probs=96.4
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
..++++|+.+++-+.+.... .+..+....- ++..++|....... .....+|.+|+.+.....+.. .+..
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~---~~~~~~~~sp~dg~~l~~~~~~~~~-----~~~~~l~~~d~~~~~~~~l~~--~~~~ 237 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQEN---QWLGHPIYRPYDDSTVAFCHEGPHD-----LVDARMWLINEDGTNMRKVKT--HAEG 237 (388)
T ss_dssp EEEEEEETTTCCEEEEEEES---SCEEEEEEETTEEEEEEEEECSCTT-----TSSCSEEEEETTSCCCEESCC--CCTT
T ss_pred ceEEEEECCCCceEEeecCC---ccccccEECCCCCCEEEEEEecCCC-----CCcceEEEEeCCCCceEEeee--CCCC
Confidence 67999999998877775321 2233333332 34444443321111 013589999998877666643 1111
Q ss_pred CceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCC-CCccceeEEEeCCEEEEEc----
Q 006473 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP-SPRSGFQFFVYQDEVFLYG---- 252 (643)
Q Consensus 180 Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P-~~R~~~s~~~~~~~iyv~G---- 252 (643)
.......+ +++.++|....... ....|+++|+.+.+-..+...+..... ....+..+...+..|++..
T Consensus 238 -~~~~~~~~spdg~~l~~~~~~~~~----~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 312 (388)
T 3pe7_A 238 -ESCTHEFWVPDGSALVYVSYLKGS----PDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDS 312 (388)
T ss_dssp -EEEEEEEECTTSSCEEEEEEETTC----CCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--------
T ss_pred -cccccceECCCCCEEEEEecCCCC----CcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecc
Confidence 11112233 44433333332211 112599999999887766554210000 0001112222233333321
Q ss_pred CCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCC----Cc--eeeEEEE-ECCeEEEeccccccccCcccc
Q 006473 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG----PR--AGFSMCV-HKKRALLFGGVVDMEMKGDVI 325 (643)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~----~R--~g~s~~~-~~~~iyvfGG~~~~~~~~~~~ 325 (643)
|+.. .....++++|+.+..-..+........ .+ .....+. -+++.++|....+
T Consensus 313 ~~~~------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-------- 372 (388)
T 3pe7_A 313 GYKI------------ENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-------- 372 (388)
T ss_dssp ----------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT--------
T ss_pred cccc------------CCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC--------
Confidence 1111 123469999999888777754311000 00 0112222 2555555544221
Q ss_pred ccccCCcEEEEECCCCcE
Q 006473 326 MSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 326 ~~~~~ndl~~yd~~t~~W 343 (643)
-...||.+++....|
T Consensus 373 ---g~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 373 ---GKPALYLATLPESVW 387 (388)
T ss_dssp ---SSCEEEEEECCGGGG
T ss_pred ---CceeEEEEECChhcc
Confidence 134699999887666
No 173
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=91.50 E-value=13 Score=37.60 Aligned_cols=70 Identities=7% Similarity=-0.112 Sum_probs=38.2
Q ss_pred CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCC--CCCCCceeeEEEEE-CCeEEEeccccccccC
Q 006473 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG--MPPGPRAGFSMCVH-KKRALLFGGVVDMEMK 321 (643)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g--~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~ 321 (643)
++ +++.|+.++. +.+||+.+.+-...-... ..+....-.++++. ++.+++.|+...
T Consensus 197 ~~-~l~~~~~dg~----------------i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~---- 255 (397)
T 1sq9_A 197 RG-LIATGFNNGT----------------VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN---- 255 (397)
T ss_dssp TS-EEEEECTTSE----------------EEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET----
T ss_pred Cc-eEEEEeCCCc----------------EEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC----
Confidence 55 7777776654 788998776544332210 00001122333333 567777777531
Q ss_pred ccccccccCCcEEEEECCCCc
Q 006473 322 GDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 322 ~~~~~~~~~ndl~~yd~~t~~ 342 (643)
-...|.+||+.+.+
T Consensus 256 -------~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 256 -------SFGCITLYETEFGE 269 (397)
T ss_dssp -------TEEEEEEEETTTCC
T ss_pred -------CCceEEEEECCCCc
Confidence 01358999998764
No 174
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=91.47 E-value=7.7 Score=38.31 Aligned_cols=189 Identities=10% Similarity=-0.002 Sum_probs=88.4
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++.+++.|+. -..+.+||+.+.+-...-.. ....-.+++.. ++.+++.|+.. ..+.
T Consensus 66 ~~~~l~s~s~---------d~~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~sgs~D-----------~~v~ 122 (304)
T 2ynn_A 66 RKNWIIVGSD---------DFRIRVFNYNTGEKVVDFEA---HPDYIRSIAVHPTKPYVLSGSDD-----------LTVK 122 (304)
T ss_dssp GGTEEEEEET---------TSEEEEEETTTCCEEEEEEC---CSSCEEEEEECSSSSEEEEEETT-----------SCEE
T ss_pred CCCEEEEECC---------CCEEEEEECCCCcEEEEEeC---CCCcEEEEEEcCCCCEEEEECCC-----------CeEE
Confidence 4566777762 23678889887653322111 11111222222 45566677653 3467
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcc
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (643)
+||+.++.=......+ ....-.+++.. ++.+++.|+.+ ..+.+||+.+..-...... ...+.
T Consensus 123 lWd~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~~l~sgs~D---------~~v~iwd~~~~~~~~~~~~-----~~~~~ 186 (304)
T 2ynn_A 123 LWNWENNWALEQTFEG--HEHFVMCVAFNPKDPSTFASGCLD---------RTVKVWSLGQSTPNFTLTT-----GQERG 186 (304)
T ss_dssp EEEGGGTTEEEEEECC--CCSCEEEEEECTTCTTEEEEEETT---------SEEEEEETTCSSCSEEEEC-----CCTTC
T ss_pred EEECCCCcchhhhhcc--cCCcEEEEEECCCCCCEEEEEeCC---------CeEEEEECCCCCccceecc-----CCcCc
Confidence 7787654211111111 11111122222 34567777753 3577788755331111101 01111
Q ss_pred ceeEEE--e-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEec
Q 006473 238 GFQFFV--Y-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFG 313 (643)
Q Consensus 238 ~~s~~~--~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfG 313 (643)
...+.. . ++.+++.|+.++. +.++|+.+..-...-. +. ...-.++++. ++.+++.|
T Consensus 187 v~~~~~~~~~~~~~l~s~s~D~~----------------i~iWd~~~~~~~~~~~-~h---~~~v~~~~~~p~~~~l~s~ 246 (304)
T 2ynn_A 187 VNYVDYYPLPDKPYMITASDDLT----------------IKIWDYQTKSCVATLE-GH---MSNVSFAVFHPTLPIIISG 246 (304)
T ss_dssp EEEEEECCSTTCCEEEEEETTSE----------------EEEEETTTTEEEEEEE-CC---SSCEEEEEECSSSSEEEEE
T ss_pred EEEEEEEEcCCCCEEEEEcCCCe----------------EEEEeCCCCccceeeC-CC---CCCEEEEEECCCCCEEEEE
Confidence 111111 1 4556777776654 7788877654322111 11 1111233333 45677777
Q ss_pred cccccccCccccccccCCcEEEEECCCCc
Q 006473 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
+.. ..|.+||+.+.+
T Consensus 247 s~D--------------g~i~iWd~~~~~ 261 (304)
T 2ynn_A 247 SED--------------GTLKIWNSSTYK 261 (304)
T ss_dssp ETT--------------SCEEEEETTTCC
T ss_pred cCC--------------CeEEEEECCCCc
Confidence 653 348899988755
No 175
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=91.46 E-value=15 Score=41.72 Aligned_cols=197 Identities=12% Similarity=0.068 Sum_probs=94.9
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCC---CCcceecC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN---QERFHHYK 156 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~---~~~~~~~~ 156 (643)
+++.++|+... .|.. ...|+++|+.++++..... +...+..+++ .++.++++....... ........
T Consensus 173 DG~~la~~~~~-~G~e---~~~i~v~dl~tg~~~~~~~-----~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~ 243 (741)
T 1yr2_A 173 DGRLLAYSVQD-GGSD---WRTVKFVGVADGKPLADEL-----KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQ 243 (741)
T ss_dssp TSSEEEEEEEE-TTCS---EEEEEEEETTTCCEEEEEE-----EEEESCCCEESTTSEEEEEECCCC--------CCCCC
T ss_pred CCCEEEEEEcC-CCCc---eEEEEEEECCCCCCCCccC-----CCceeccEEEECCCEEEEEEecCcccccccccCCCCC
Confidence 45555555421 2221 2369999999998765421 1111112222 223333333221100 00001235
Q ss_pred eEEEEECCCCcE--EEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCC--c-eEEeccCCC
Q 006473 157 DFWMLDLKTNQW--EQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--K-WQEIKPRFG 229 (643)
Q Consensus 157 dv~~yD~~t~~W--~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~--~-W~~v~~~~~ 229 (643)
.+|++++.+..- ..+.. ....+... ..+.+ +++.+++....... ..+.+|++|+.+. . |..+...
T Consensus 244 ~v~~~~lgt~~~~~~lv~~-~~~~~~~~-~~~~~SpDG~~l~~~~~~~~~----~~~~l~~~d~~~~~~~~~~~l~~~-- 315 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFA-TPELPKRG-HGASVSSDGRWVVITSSEGTD----PVNTVHVARVTNGKIGPVTALIPD-- 315 (741)
T ss_dssp EEEEEETTSCGGGCEEEEC-CTTCTTCE-EEEEECTTSCEEEEEEECTTC----SCCEEEEEEEETTEECCCEEEECS--
T ss_pred EEEEEECCCCchhCEEEec-cCCCCeEE-EEEEECCCCCEEEEEEEccCC----CcceEEEEECCCCCCcccEEecCC--
Confidence 689999877652 12211 01112222 22233 44434443332211 2568999999877 6 8888654
Q ss_pred CCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC--CeeEEeccCCCCCCCceeeEEEEECC
Q 006473 230 SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGFSMCVHKK 307 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~l~~~g~~P~~R~g~s~~~~~~ 307 (643)
....... +...++.||+...... ....++.+|+.+ ..|..+.+.. +. .-..++..++
T Consensus 316 ---~~~~~~~-~~~dg~~l~~~s~~~~-------------~~~~l~~~d~~~~~~~~~~l~~~~--~~--~l~~~~~~~~ 374 (741)
T 1yr2_A 316 ---LKAQWDF-VDGVGDQLWFVSGDGA-------------PLKKIVRVDLSGSTPRFDTVVPES--KD--NLESVGIAGN 374 (741)
T ss_dssp ---SSSCEEE-EEEETTEEEEEECTTC-------------TTCEEEEEECSSSSCEEEEEECCC--SS--EEEEEEEEBT
T ss_pred ---CCceEEE-EeccCCEEEEEECCCC-------------CCCEEEEEeCCCCccccEEEecCC--CC--eEEEEEEECC
Confidence 1222222 2345778887754322 124588999877 5798886421 11 1223344477
Q ss_pred eEEEeccc
Q 006473 308 RALLFGGV 315 (643)
Q Consensus 308 ~iyvfGG~ 315 (643)
++++....
T Consensus 375 ~lv~~~~~ 382 (741)
T 1yr2_A 375 RLFASYIH 382 (741)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 77666543
No 176
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=91.40 E-value=4.5 Score=40.23 Aligned_cols=196 Identities=13% Similarity=0.122 Sum_probs=95.5
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--C---CEEEEEeCccCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K---NYLYIFGGEFTSP 147 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~---~~iyvfGG~~~~~ 147 (643)
++...|. +..+++.|+.. .+ -+.+.+|++.+.+...+.... ... ...++.+ + +.+++.|+..
T Consensus 23 ~~~~~p~-~~~l~~~~s~~-~~-----d~~v~iw~~~~~~~~~~~~~~--~~~-~v~~~~~~~~~~~~~~l~~~~~d--- 89 (357)
T 3i2n_A 23 DCKWVPC-SAKFVTMGNFA-RG-----TGVIQLYEIQHGDLKLLREIE--KAK-PIKCGTFGATSLQQRYLATGDFG--- 89 (357)
T ss_dssp EEEECTT-SSEEEEEEC---CC-----CEEEEEEEECSSSEEEEEEEE--ESS-CEEEEECTTCCTTTCCEEEEETT---
T ss_pred EEEEcCC-CceEEEecCcc-CC-----CcEEEEEeCCCCcccceeeec--ccC-cEEEEEEcCCCCCCceEEEecCC---
Confidence 4445552 24666666520 00 246888999888765442211 111 1122233 2 4677777642
Q ss_pred CCCcceecCeEEEEECCCCc--EEEeccCCCCCCCceeEEEE-------ECCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 148 NQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVL-------YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~-------~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
..+.+||+.+.. -..+.. ...+ -.++.. .++.+++.|+.+ ..+.+||+.+
T Consensus 90 --------g~i~iwd~~~~~~~~~~~~~--~~~~--v~~~~~~~~~~~s~~~~~l~~~~~d---------~~i~vwd~~~ 148 (357)
T 3i2n_A 90 --------GNLHIWNLEAPEMPVYSVKG--HKEI--INAIDGIGGLGIGEGAPEIVTGSRD---------GTVKVWDPRQ 148 (357)
T ss_dssp --------SCEEEECTTSCSSCSEEECC--CSSC--EEEEEEESGGGCC-CCCEEEEEETT---------SCEEEECTTS
T ss_pred --------CeEEEEeCCCCCccEEEEEe--cccc--eEEEeeccccccCCCccEEEEEeCC---------CeEEEEeCCC
Confidence 357788887654 122211 1111 111211 145566666642 3588888877
Q ss_pred Cc--eEEeccCCCCCCCCCccceeEE----E-eCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCC
Q 006473 219 FK--WQEIKPRFGSMWPSPRSGFQFF----V-YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (643)
Q Consensus 219 ~~--W~~v~~~~~~~~P~~R~~~s~~----~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g 291 (643)
.. ...+..... ...+.-.+++ . .++.+++.|+.++. +.+||+.+..-......
T Consensus 149 ~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~~- 208 (357)
T 3i2n_A 149 KDDPVANMEPVQG---ENKRDCWTVAFGNAYNQEERVVCAGYDNGD----------------IKLFDLRNMALRWETNI- 208 (357)
T ss_dssp CSSCSEEECCCTT---SCCCCEEEEEEECCCC-CCCEEEEEETTSE----------------EEEEETTTTEEEEEEEC-
T ss_pred CCCcceeccccCC---CCCCceEEEEEEeccCCCCCEEEEEccCCe----------------EEEEECccCceeeecCC-
Confidence 54 333333211 1111222222 1 26677777766544 78889877664333221
Q ss_pred CCCCCceeeEEEEE----CCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 292 MPPGPRAGFSMCVH----KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 292 ~~P~~R~g~s~~~~----~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
...-.++++. ++..++.|+.. ..|.+||+.+
T Consensus 209 ----~~~v~~~~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~ 243 (357)
T 3i2n_A 209 ----KNGVCSLEFDRKDISMNKLVATSLE--------------GKFHVFDMRT 243 (357)
T ss_dssp ----SSCEEEEEESCSSSSCCEEEEEEST--------------TEEEEEEEEE
T ss_pred ----CCceEEEEcCCCCCCCCEEEEECCC--------------CeEEEEeCcC
Confidence 1223344444 46677777643 3477777654
No 177
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=91.38 E-value=5.8 Score=42.98 Aligned_cols=150 Identities=9% Similarity=-0.031 Sum_probs=75.0
Q ss_pred EEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC-CceeEEEEE--C-CEEEEEeeeecCCCceeeeccEE
Q 006473 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP-RSGHRMVLY--K-HKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 137 iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~-Rs~h~~~~~--~-~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
+++.|+.. ..+.+||+.+.+-...-. .... ...-.++.+ + +.+++.|+.+ ..+.
T Consensus 175 ~l~~~~~d-----------~~v~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~ 232 (615)
T 1pgu_A 175 RSMTVGDD-----------GSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSD---------RKIS 232 (615)
T ss_dssp EEEEEETT-----------TEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETT---------CCEE
T ss_pred EEEEEeCC-----------CcEEEEeCCCcceeeeec--ccCCCCceEEEEEECCCCCCEEEEEeCC---------CeEE
Confidence 66776642 457788887655433211 1111 002222333 4 6677777642 4688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCC
Q 006473 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (643)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 292 (643)
+||+.+.+....-..+......+... +...++.+++.|+.++. +.+||+.+.+....-....
T Consensus 233 vwd~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~l~~~~~d~~----------------i~~wd~~~~~~~~~~~~~~ 294 (615)
T 1pgu_A 233 CFDGKSGEFLKYIEDDQEPVQGGIFA--LSWLDSQKFATVGADAT----------------IRVWDVTTSKCVQKWTLDK 294 (615)
T ss_dssp EEETTTCCEEEECCBTTBCCCSCEEE--EEESSSSEEEEEETTSE----------------EEEEETTTTEEEEEEECCT
T ss_pred EEECCCCCEeEEecccccccCCceEE--EEEcCCCEEEEEcCCCc----------------EEEEECCCCcEEEEEcCCC
Confidence 89988766433321100000112222 22226777777776544 7788887765544322211
Q ss_pred CCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 293 PPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 293 ~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
.+......+++..++..++.|+.. +.|.+||+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~~--------------g~i~~~d~~~ 328 (615)
T 1pgu_A 295 QQLGNQQVGVVATGNGRIISLSLD--------------GTLNFYELGH 328 (615)
T ss_dssp TCGGGCEEEEEEEETTEEEEEETT--------------SCEEEEETTE
T ss_pred CcccCceeEEEeCCCCeEEEEECC--------------CCEEEEECCC
Confidence 111122233333366667777653 3478888775
No 178
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=91.37 E-value=5.9 Score=44.86 Aligned_cols=124 Identities=16% Similarity=0.111 Sum_probs=70.1
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccCCC---CC---CCceeEEEEECCEEEEEeeeecC
Q 006473 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGC---PS---PRSGHRMVLYKHKIIVFGGFYDT 201 (643)
Q Consensus 130 ~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~---P~---~Rs~h~~~~~~~~lyvfGG~~~~ 201 (643)
-++.++.||+.... +.|+.||..|++ |+.-..... +. .....+.++.+++||+...
T Consensus 73 P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---- 136 (677)
T 1kb0_A 73 PVVVDGIMYVSASW------------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---- 136 (677)
T ss_dssp CEEETTEEEEECGG------------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT----
T ss_pred CEEECCEEEEECCC------------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC----
Confidence 34569999998642 468899998875 876433110 00 0112345567888887532
Q ss_pred CCceeeeccEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeC
Q 006473 202 LREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (643)
Q Consensus 202 ~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (643)
-..|+.+|..+.+ |+.-..... ........+.++.++.||+..+.... .....++.||+
T Consensus 137 ------dg~l~alD~~tG~~~W~~~~~~~~--~~~~~~~~~p~v~~~~v~v~~~~~~~-----------~~~g~v~a~D~ 197 (677)
T 1kb0_A 137 ------DGRLIALDAATGKEVWHQNTFEGQ--KGSLTITGAPRVFKGKVIIGNGGAEY-----------GVRGYITAYDA 197 (677)
T ss_dssp ------TSEEEEEETTTCCEEEEEETTTTC--CSSCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEET
T ss_pred ------CCEEEEEECCCCCEEeeecCCcCc--CcCcccccCcEEECCEEEEEeccccc-----------CCCCEEEEEEC
Confidence 2469999998765 876543100 01111222334557777764432111 12356899998
Q ss_pred CCC--eeEEec
Q 006473 280 RTW--EWSKVK 288 (643)
Q Consensus 280 ~t~--~W~~l~ 288 (643)
.+. .|..-.
T Consensus 198 ~tG~~~W~~~~ 208 (677)
T 1kb0_A 198 ETGERKWRWFS 208 (677)
T ss_dssp TTCCEEEEEES
T ss_pred CCCcEEEEecc
Confidence 765 587654
No 179
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=91.32 E-value=11 Score=42.85 Aligned_cols=123 Identities=15% Similarity=0.098 Sum_probs=69.1
Q ss_pred EEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccCCC---CC---CCceeEEEEECCEEEEEeeeecCC
Q 006473 131 VSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGC---PS---PRSGHRMVLYKHKIIVFGGFYDTL 202 (643)
Q Consensus 131 ~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~---P~---~Rs~h~~~~~~~~lyvfGG~~~~~ 202 (643)
++.++.||+.+. ...|+.||..|++ |+.-..... +. .....+.++.+++||+...
T Consensus 67 ~v~~g~vyv~~~------------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~----- 129 (689)
T 1yiq_A 67 IVVDGVMYTTGP------------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL----- 129 (689)
T ss_dssp EEETTEEEEECG------------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-----
T ss_pred EEECCEEEEEcC------------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-----
Confidence 456999999754 2468899988774 876432110 00 0111234567888887532
Q ss_pred CceeeeccEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC
Q 006473 203 REVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280 (643)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~ 280 (643)
-..|+.+|..+.+ |+.-..... ........+.++.++.||+-.+.... .....++.||+.
T Consensus 130 -----dg~l~AlDa~TG~~~W~~~~~~~~--~~~~~~~~sP~v~~g~v~vg~~~~~~-----------~~~g~v~a~D~~ 191 (689)
T 1yiq_A 130 -----DGRLEAIDAKTGQRAWSVDTRADH--KRSYTITGAPRVVNGKVVIGNGGAEF-----------GVRGYVTAYDAE 191 (689)
T ss_dssp -----TSEEEEEETTTCCEEEEEECCSCT--TSCCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEETT
T ss_pred -----CCEEEEEECCCCCEeeeecCcCCC--CCCccccCCcEEECCEEEEEeCCCcc-----------CCCCEEEEEECC
Confidence 2468999988765 876543100 01112222335568887763322111 123468999987
Q ss_pred CC--eeEEec
Q 006473 281 TW--EWSKVK 288 (643)
Q Consensus 281 t~--~W~~l~ 288 (643)
+. .|..-.
T Consensus 192 tG~~~W~~~~ 201 (689)
T 1yiq_A 192 TGKEAWRFYT 201 (689)
T ss_dssp TCCEEEEEES
T ss_pred CCcEEEEecc
Confidence 65 588653
No 180
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=91.17 E-value=5.3 Score=39.00 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=16.4
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK 114 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~ 114 (643)
++++++.|+. + +.+.+|++.+++-.
T Consensus 78 ~~~~l~sgs~--D-------g~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 78 EGNYLAVGTS--S-------AEVQLWDVQQQKRL 102 (318)
T ss_dssp TSSEEEEEET--T-------SEEEEEETTTTEEE
T ss_pred CCCEEEEEEC--C-------CcEEEeecCCceeE
Confidence 5667777772 2 35778888887644
No 181
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=91.16 E-value=4.6 Score=41.09 Aligned_cols=92 Identities=11% Similarity=0.062 Sum_probs=47.7
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
..+.+||+.......+..... ....-.+++.. ++.+++.|+.. ..+.+||+....-..+.. ..
T Consensus 141 ~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~---h~- 204 (383)
T 3ei3_B 141 GATTLRDFSGSVIQVFAKTDS-WDYWYCCVDVSVSRQMLATGDST-----------GRLLLLGLDGHEIFKEKL---HK- 204 (383)
T ss_dssp TEEEEEETTSCEEEEEECCCC-SSCCEEEEEEETTTTEEEEEETT-----------SEEEEEETTSCEEEEEEC---SS-
T ss_pred CEEEEEECCCCceEEEeccCC-CCCCeEEEEECCCCCEEEEECCC-----------CCEEEEECCCCEEEEecc---CC-
Confidence 357788888776666543221 11112222222 45666666642 468888885444333322 11
Q ss_pred CceeEEEEE--CCE-EEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 180 RSGHRMVLY--KHK-IIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 180 Rs~h~~~~~--~~~-lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
..-.++.+ ++. +++.|+.+ ..+.+||+.+
T Consensus 205 -~~v~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~ 236 (383)
T 3ei3_B 205 -AKVTHAEFNPRCDWLMATSSVD---------ATVKLWDLRN 236 (383)
T ss_dssp -SCEEEEEECSSCTTEEEEEETT---------SEEEEEEGGG
T ss_pred -CcEEEEEECCCCCCEEEEEeCC---------CEEEEEeCCC
Confidence 11222333 333 67777642 4578888876
No 182
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.13 E-value=7.1 Score=39.57 Aligned_cols=113 Identities=9% Similarity=0.050 Sum_probs=57.4
Q ss_pred eccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCE-EEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDE-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
...|+++|+.+.....+... +.......+...++. |++... ... ......+|.+++.+..+..
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~-----~~~~~~~~~sp~dg~~l~~~~~-~~~----------~~~~~~l~~~d~~~~~~~~ 230 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQD-----TAWLGHPIYRPFDDSTVGFCHE-GPH----------DLVDARMWLVNEDGSNVRK 230 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEE-----SSCEEEEEEETTEEEEEEEEEC-SCS----------SSCSCCCEEEETTSCCCEE
T ss_pred cceEEEEECCCCcEEeeccC-----CcccccceECCCCCCEEEEEec-CCC----------CCCCceEEEEECCCCceeE
Confidence 35799999998887766532 111111122221243 444432 111 0122468999998877776
Q ss_pred eccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 287 VKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 287 l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+... .+ ......+++. +++.+++..... ......|++||+.+.....+..
T Consensus 231 l~~~--~~-~~~~~~~~~spdg~~l~~~~~~~---------~~~~~~l~~~d~~~g~~~~l~~ 281 (396)
T 3c5m_A 231 IKEH--AE-GESCTHEFWIPDGSAMAYVSYFK---------GQTDRVIYKANPETLENEEVMV 281 (396)
T ss_dssp SSCC--CT-TEEEEEEEECTTSSCEEEEEEET---------TTCCEEEEEECTTTCCEEEEEE
T ss_pred eecc--CC-CccccceEECCCCCEEEEEecCC---------CCccceEEEEECCCCCeEEeee
Confidence 6431 01 1112223333 555555554321 0111349999999887766653
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=91.05 E-value=4.7 Score=45.50 Aligned_cols=151 Identities=11% Similarity=0.048 Sum_probs=78.6
Q ss_pred cCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc---eEEeccCCCCC
Q 006473 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---WQEIKPRFGSM 231 (643)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~---W~~v~~~~~~~ 231 (643)
.+.+|.++..+..|..+... .... ...+..++.||+.... +. ....|+++|+.+.. |..+.+..
T Consensus 251 ~~~l~~~~~~~~~~~~l~~~--~~~~--~~~~~~~g~l~~~s~~-~~-----~~~~l~~~d~~~~~~~~~~~l~~~~--- 317 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFRLLVKG--VGAK--YEVHAWKDRFYVLTDE-GA-----PRQRVFEVDPAKPARASWKEIVPED--- 317 (695)
T ss_dssp EEEEEEECTTCSSCEEEEEC--SSCC--EEEEEETTEEEEEECT-TC-----TTCEEEEEBTTBCSGGGCEEEECCC---
T ss_pred ceEEEEEcCCCCceEEeecC--CCce--EEEEecCCcEEEEECC-CC-----CCCEEEEEeCCCCCccCCeEEecCC---
Confidence 35789998877888887652 1111 1222245555555332 11 13578999987654 88776541
Q ss_pred CCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE-ECCeEE
Q 006473 232 WPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRAL 310 (643)
Q Consensus 232 ~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~-~~~~iy 310 (643)
+ ...-..+...++.|++....++ ...+|.+++....-..+.. |....-.+++. -++..+
T Consensus 318 -~-~~~l~~~~~~~~~lv~~~~~dg--------------~~~l~~~~~~g~~~~~l~~----~~~~~v~~~~~s~d~~~l 377 (695)
T 2bkl_A 318 -S-SASLLSVSIVGGHLSLEYLKDA--------------TSEVRVATLKGKPVRTVQL----PGVGAASNLMGLEDLDDA 377 (695)
T ss_dssp -S-SCEEEEEEEETTEEEEEEEETT--------------EEEEEEEETTCCEEEECCC----SSSSEECCCBSCTTCSEE
T ss_pred -C-CCeEEEEEEECCEEEEEEEECC--------------EEEEEEEeCCCCeeEEecC----CCCeEEEEeecCCCCCEE
Confidence 1 1111233444888887765433 2458888875543333321 11111111111 133333
Q ss_pred EeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 311 vfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+|...+. .....||.||+.++....+..
T Consensus 378 ~~~~ss~----------~~P~~v~~~d~~~g~~~~l~~ 405 (695)
T 2bkl_A 378 YYVFTSF----------TTPRQIYKTSVSTGKSELWAK 405 (695)
T ss_dssp EEEEEET----------TEEEEEEEEETTTCCEEEEEE
T ss_pred EEEEcCC----------CCCCEEEEEECCCCcEEEEec
Confidence 3333221 113569999999988766654
No 184
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=91.00 E-value=12 Score=36.22 Aligned_cols=105 Identities=10% Similarity=0.073 Sum_probs=55.8
Q ss_pred CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCC
Q 006473 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEK 267 (643)
Q Consensus 189 ~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~ 267 (643)
++. ++.|+. -..+.+||+.+.+-...-.. ....-.+++.. ++ .++.|+.++.
T Consensus 195 ~~~-~~~~~~---------dg~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~-~l~~~~~dg~---------- 247 (313)
T 3odt_A 195 DGH-FISCSN---------DGLIKLVDMHTGDVLRTYEG------HESFVYCIKLLPNG-DIVSCGEDRT---------- 247 (313)
T ss_dssp TTE-EEEEET---------TSEEEEEETTTCCEEEEEEC------CSSCEEEEEECTTS-CEEEEETTSE----------
T ss_pred CCe-EEEccC---------CCeEEEEECCchhhhhhhhc------CCceEEEEEEecCC-CEEEEecCCE----------
Confidence 666 556653 24688899876543222111 11111223333 44 4666766554
Q ss_pred CceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEE
Q 006473 268 GIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (643)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (643)
+.+||+.+.+....-.. +.. .-.++++. +++ ++.|+.. +.|.+||+.+.+|..
T Consensus 248 ------v~iwd~~~~~~~~~~~~---~~~-~i~~~~~~~~~~-~~~~~~d--------------g~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 248 ------VRIWSKENGSLKQVITL---PAI-SIWSVDCMSNGD-IIVGSSD--------------NLVRIFSQEKSRWAS 301 (313)
T ss_dssp ------EEEECTTTCCEEEEEEC---SSS-CEEEEEECTTSC-EEEEETT--------------SCEEEEESCGGGCCC
T ss_pred ------EEEEECCCCceeEEEec---cCc-eEEEEEEccCCC-EEEEeCC--------------CcEEEEeCCCCceee
Confidence 88899877765443321 111 22334444 455 5556543 459999998876644
No 185
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=90.99 E-value=7.2 Score=42.24 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=18.6
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ 111 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~ 111 (643)
.++.+.| ++.++++|+ + +.+.+|++.+.
T Consensus 22 ~~~~~sp--dg~~l~~~~----~------~~v~v~~~~~~ 49 (615)
T 1pgu_A 22 THLSYDP--TTNAIAYPC----G------KSAFVRCLDDG 49 (615)
T ss_dssp CCCEEET--TTTEEEEEE----T------TEEEEEECCSS
T ss_pred eEEEECC--CCCEEEEec----C------CeEEEEECCCC
Confidence 4455555 667777776 1 36888998865
No 186
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=90.97 E-value=0.92 Score=47.86 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=14.9
Q ss_pred CCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 189 ~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
++.+++.|+. -..|.+||+.+.
T Consensus 243 ~~~~l~s~~~---------dg~i~i~d~~~~ 264 (430)
T 2xyi_A 243 HESLFGSVAD---------DQKLMIWDTRNN 264 (430)
T ss_dssp CTTEEEEEET---------TSEEEEEETTCS
T ss_pred CCCEEEEEeC---------CCeEEEEECCCC
Confidence 4567766664 246888998765
No 187
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=90.96 E-value=13 Score=38.39 Aligned_cols=66 Identities=9% Similarity=0.107 Sum_probs=37.5
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv 211 (643)
++.+++.|+.. ..+.+||+.+.+-...-. .+.....-.++.+ ++.+++.|+.+ ..+
T Consensus 181 ~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~d---------g~i 238 (437)
T 3gre_A 181 EKSLLVALTNL-----------SRVIIFDIRTLERLQIIE--NSPRHGAVSSICIDEECCVLILGTTR---------GII 238 (437)
T ss_dssp SCEEEEEEETT-----------SEEEEEETTTCCEEEEEE--CCGGGCCEEEEEECTTSCEEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CeEEEEeCCCCeeeEEEc--cCCCCCceEEEEECCCCCEEEEEcCC---------CeE
Confidence 46677777642 468899998776433221 1111112222333 56667777643 458
Q ss_pred EEEEcCCCce
Q 006473 212 YVFDLDQFKW 221 (643)
Q Consensus 212 ~~yD~~t~~W 221 (643)
.+||+.+...
T Consensus 239 ~iwd~~~~~~ 248 (437)
T 3gre_A 239 DIWDIRFNVL 248 (437)
T ss_dssp EEEETTTTEE
T ss_pred EEEEcCCccE
Confidence 8899887654
No 188
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=90.84 E-value=4.4 Score=38.25 Aligned_cols=145 Identities=18% Similarity=0.390 Sum_probs=78.3
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCC--CcEE--EecC--CCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWK--VISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~--~~W~--~l~s--~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~ 152 (643)
++++|+|=| +.+|+|+... .... .|.. +.+|. .--++... ++++|+|-|
T Consensus 16 ~g~~yfFkg-----------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~--~IDAa~~~~~~~~~yfFkG---------- 72 (195)
T 1itv_A 16 GNQLYLFKD-----------GKYWRFSEGRGSRPQGPFLIADKWPALPR--KLDSVFEEPLSKKLFFFSG---------- 72 (195)
T ss_dssp TTEEEEEET-----------TEEEEECCSSSCCCEEEEEHHHHCTTSCS--SCSEEEECTTTCCEEEEET----------
T ss_pred CCEEEEEEC-----------CEEEEEECCccccCCCcEEhhhccCCCCC--CccEEEEECCCCeEEEEeC----------
Confidence 689999988 3678887655 2232 2221 23332 22333333 678999988
Q ss_pred eecCeEEEEECCCCcE-EEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceE-----Ee
Q 006473 153 HHYKDFWMLDLKTNQW-EQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-----EI 224 (643)
Q Consensus 153 ~~~~dv~~yD~~t~~W-~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~-----~v 224 (643)
+.+|+|+..+..- ..+..-|+|......-+++. ++++|+|-| +..|+||..+.+-. .+
T Consensus 73 ---~~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-----------~~ywr~d~~~~~~~~gyPr~i 138 (195)
T 1itv_A 73 ---RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-----------RRLWRFDVKAQMVDPRSASEV 138 (195)
T ss_dssp ---TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-----------TEEEEEETTTTEECGGGCEEH
T ss_pred ---CEEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC-----------CEEEEEeCCcccccCCCccCh
Confidence 4578888643211 11222234543222333332 679999977 35789998765311 11
Q ss_pred ccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe
Q 006473 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (643)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (643)
...-.+. |. .-.++...++.+|+|-|. ..|+|+..+.+
T Consensus 139 ~~~w~Gv-p~--~idaa~~~~g~~Yffkg~------------------~y~~~~~~~~~ 176 (195)
T 1itv_A 139 DRMFPGV-PL--DTHDVFQFREKAYFCQDR------------------FYWRVSSRSEL 176 (195)
T ss_dssp HHHSTTS-CS--SCSEEEEETTEEEEEETT------------------EEEEEECCTTC
T ss_pred hhcCCCC-CC--CCCEEEEeCCeEEEEeCC------------------EEEEEECCccE
Confidence 1111111 21 122344457899998774 37788876654
No 189
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=90.78 E-value=9.7 Score=43.26 Aligned_cols=173 Identities=11% Similarity=0.054 Sum_probs=91.5
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCC--c-EEEecCCCCCCCceeeEEEEECCEEEEEeCccCCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--E-WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSP 147 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~-W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~ 147 (643)
..+....| +++.+++.... +. ...+.+|.+|+.+. . |+.+.... ... ...+...++.||+.......
T Consensus 270 ~~~~~~Sp--DG~~l~~~~~~--~~--~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~-~~~~~~dg~~l~~~s~~~~~- 339 (741)
T 1yr2_A 270 GHGASVSS--DGRWVVITSSE--GT--DPVNTVHVARVTNGKIGPVTALIPDL--KAQ-WDFVDGVGDQLWFVSGDGAP- 339 (741)
T ss_dssp EEEEEECT--TSCEEEEEEEC--TT--CSCCEEEEEEEETTEECCCEEEECSS--SSC-EEEEEEETTEEEEEECTTCT-
T ss_pred EEEEEECC--CCCEEEEEEEc--cC--CCcceEEEEECCCCCCcccEEecCCC--Cce-EEEEeccCCEEEEEECCCCC-
Confidence 33444454 55544444421 11 12468999999887 7 88886532 112 22223457788887654211
Q ss_pred CCCcceecCeEEEEECCC--CcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 148 NQERFHHYKDFWMLDLKT--NQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t--~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
...++++|+.+ ..|..+.+.. .. .-......+++|++....++ ...||++++....-..+.
T Consensus 340 -------~~~l~~~d~~~~~~~~~~l~~~~-~~--~l~~~~~~~~~lv~~~~~dg-------~~~l~~~~~~g~~~~~l~ 402 (741)
T 1yr2_A 340 -------LKKIVRVDLSGSTPRFDTVVPES-KD--NLESVGIAGNRLFASYIHDA-------KSQVLAFDLDGKPAGAVS 402 (741)
T ss_dssp -------TCEEEEEECSSSSCEEEEEECCC-SS--EEEEEEEEBTEEEEEEEETT-------EEEEEEEETTSCEEEECB
T ss_pred -------CCEEEEEeCCCCccccEEEecCC-CC--eEEEEEEECCEEEEEEEECC-------EEEEEEEeCCCCceeecc
Confidence 25699999988 5798875421 11 11223344788877765432 457889987544333332
Q ss_pred cCCCCCCCCCccceeEEEe-C-CEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 226 PRFGSMWPSPRSGFQFFVY-Q-DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
. |...+-..+... + +.|++.. .+. ..-..+|.||+.+...+.+..
T Consensus 403 ~------~~~~~v~~~~~s~d~~~l~~~~-ss~------------~~P~~i~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 403 L------PGIGSASGLSGRPGDRHAYLSF-SSF------------TQPATVLALDPATAKTTPWEP 449 (741)
T ss_dssp C------SSSCEEEEEECCBTCSCEEEEE-EET------------TEEEEEEEEETTTTEEEECSC
T ss_pred C------CCCeEEEEeecCCCCCEEEEEE-cCC------------CCCCEEEEEECCCCcEEEEec
Confidence 1 211111111111 2 2333322 111 234678999988887766643
No 190
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=90.72 E-value=2 Score=41.09 Aligned_cols=104 Identities=14% Similarity=0.198 Sum_probs=59.3
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcE---EEecCCCCCCC-ceeeEEEEE--CCEEEEEeCccCCCCCCccee
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW---KVISSPNSPPP-RSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W---~~l~s~~~P~p-Rs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~ 154 (643)
++++|+|=| +.+|+|+..+-.- +.|.....|.. ..--+++.. ++++|+|-|
T Consensus 79 ~~~iyfFkG-----------~~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG------------ 135 (207)
T 1pex_A 79 HDLIFIFRG-----------RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG------------ 135 (207)
T ss_dssp TTEEEEEET-----------TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET------------
T ss_pred CCcEEEEcc-----------CEEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC------------
Confidence 589999988 3567776432111 23333233321 122233333 489999988
Q ss_pred cCeEEEEECCCCcEEEecc-------CCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 155 YKDFWMLDLKTNQWEQLNL-------KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~-------~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
+..|+||..+++-..--+ .++| ..-.++...++++|+|-| +..|+||..+.+-
T Consensus 136 -~~ywr~d~~~~~~d~gyPr~i~~~~~Gip--~~iDaAf~~~g~~YfFkg-----------~~y~rf~~~~~~v 195 (207)
T 1pex_A 136 -NQVWRYDDTNHIMDKDYPRLIEEDFPGIG--DKVDAVYEKNGYIYFFNG-----------PIQFEYSIWSNRI 195 (207)
T ss_dssp -TEEEEEETTTTEECSSCCCBHHHHSTTSC--SCCSEEEEETTEEEEEET-----------TEEEEEETTTTEE
T ss_pred -CEEEEEeCcCccccCCCCccHHHcCCCCC--CCccEEEEcCCcEEEEEC-----------CEEEEEeCCccEE
Confidence 468999987654221000 1223 223345557999999977 4578888876543
No 191
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=90.69 E-value=12 Score=42.15 Aligned_cols=110 Identities=9% Similarity=0.050 Sum_probs=54.5
Q ss_pred eEEEEECCC-CcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCC
Q 006473 157 DFWMLDLKT-NQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (643)
Q Consensus 157 dv~~yD~~t-~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (643)
.+|++|+.+ ..-..+.... +....-..++.-+++.++++...... ....|+++|+.+.+...+...........
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~pDg~~l~~~~~~~~~----~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 338 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGK-EQDIYLARVNWRDPQHLSFQRQSRDQ----KKLDLVEVTLASNQQRVLAHETSPTWVPL 338 (741)
T ss_dssp EEEEECSSTTCCCEEECCCS-CSSEEEEEEEEEETTEEEEEEEETTS----SEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred EEEEEECCCCCceEEecCCC-CcceEEEEEEeCCCCEEEEEEecccC----CeEEEEEEECCCCceEEEEEcCCCCcCCc
Confidence 789999988 7765554310 11111111111344444444432221 24689999999888766644311000000
Q ss_pred ccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEec
Q 006473 236 RSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (643)
Q Consensus 236 R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (643)
.. .++.. ++++++.++.++. ..+|.+++... +..+.
T Consensus 339 ~~--~~~~spdg~~~~~~~~~g~--------------~~l~~~~~~~~-~~~l~ 375 (741)
T 2ecf_A 339 HN--SLRFLDDGSILWSSERTGF--------------QHLYRIDSKGK-AAALT 375 (741)
T ss_dssp CS--CCEECTTSCEEEEECTTSS--------------CEEEEECSSSC-EEESC
T ss_pred CC--ceEECCCCeEEEEecCCCc--------------cEEEEEcCCCC-eeeee
Confidence 11 12222 5556666654332 45888887655 55543
No 192
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=90.67 E-value=3.8 Score=40.82 Aligned_cols=105 Identities=12% Similarity=0.119 Sum_probs=52.6
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCCCCCceeeEEEE-----ECCEEEEEeCccCCCCCCcce
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVS-----WKNYLYIFGGEFTSPNQERFH 153 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~pRs~ha~~~-----~~~~iyvfGG~~~~~~~~~~~ 153 (643)
++.+++.|+. -..+.+||+.+.. ...+........+.-.+++. -++.+++.|+..
T Consensus 128 ~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d--------- 189 (357)
T 3i2n_A 128 GAPEIVTGSR---------DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN--------- 189 (357)
T ss_dssp CCCEEEEEET---------TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT---------
T ss_pred CccEEEEEeC---------CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC---------
Confidence 4556666662 1367888888764 33333222111222233331 256666666542
Q ss_pred ecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE----CCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 154 HYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 154 ~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~----~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
..+.+||+.+..-..... . ...-.+++.. ++.+++.|+.+ ..+.+||+.+
T Consensus 190 --~~i~i~d~~~~~~~~~~~--~--~~~v~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~ 243 (357)
T 3i2n_A 190 --GDIKLFDLRNMALRWETN--I--KNGVCSLEFDRKDISMNKLVATSLE---------GKFHVFDMRT 243 (357)
T ss_dssp --SEEEEEETTTTEEEEEEE--C--SSCEEEEEESCSSSSCCEEEEEEST---------TEEEEEEEEE
T ss_pred --CeEEEEECccCceeeecC--C--CCceEEEEcCCCCCCCCEEEEECCC---------CeEEEEeCcC
Confidence 468899998876433322 1 1122233332 45666666542 3466777654
No 193
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=90.66 E-value=4 Score=41.81 Aligned_cols=150 Identities=13% Similarity=0.063 Sum_probs=75.3
Q ss_pred CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC----CceeEEEEE--C-CEEEEEeeeecCCCceee
Q 006473 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP----RSGHRMVLY--K-HKIIVFGGFYDTLREVRY 207 (643)
Q Consensus 135 ~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~----Rs~h~~~~~--~-~~lyvfGG~~~~~~~~~~ 207 (643)
+.+++.|+.. ..+.+||+.+......-. .+.. .....++.+ + ..+++.|+.++.
T Consensus 178 ~~~l~~~~~d-----------g~v~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~------ 238 (416)
T 2pm9_A 178 AHVFASAGSS-----------NFASIWDLKAKKEVIHLS--YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN------ 238 (416)
T ss_dssp TTEEEEESSS-----------SCEEEEETTTTEEEEEEC--CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS------
T ss_pred CcEEEEEcCC-----------CCEEEEECCCCCcceEEe--ccccccccCCceEEEEECCCCCCEEEEEECCCC------
Confidence 5677877752 358899998876543322 1211 122222333 2 356676664321
Q ss_pred eccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeE
Q 006473 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (643)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (643)
...+.+||+.+..- .+..... .....-.+++.. ++.+++.|+.++. +.+||+.+.+-.
T Consensus 239 ~~~i~~~d~~~~~~-~~~~~~~---~~~~~v~~~~~s~~~~~~l~s~~~dg~----------------v~~wd~~~~~~~ 298 (416)
T 2pm9_A 239 DPSILIWDLRNANT-PLQTLNQ---GHQKGILSLDWCHQDEHLLLSSGRDNT----------------VLLWNPESAEQL 298 (416)
T ss_dssp SCCCCEEETTSTTS-CSBCCCS---CCSSCEEEEEECSSCSSCEEEEESSSE----------------EEEECSSSCCEE
T ss_pred CceEEEEeCCCCCC-CcEEeec---CccCceeEEEeCCCCCCeEEEEeCCCC----------------EEEeeCCCCccc
Confidence 12678888876421 1111100 011111222222 5677788877654 778887765433
Q ss_pred EeccCCCCCCCceeeEEEEE-CC-eEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 286 KVKKIGMPPGPRAGFSMCVH-KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 286 ~l~~~g~~P~~R~g~s~~~~-~~-~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
..-.. ....-.++++. ++ .+++.|+.. +.|.+||+.+.
T Consensus 299 ~~~~~----~~~~v~~~~~s~~~~~~l~s~~~d--------------~~i~iw~~~~~ 338 (416)
T 2pm9_A 299 SQFPA----RGNWCFKTKFAPEAPDLFACASFD--------------NKIEVQTLQNL 338 (416)
T ss_dssp EEEEC----SSSCCCCEEECTTCTTEEEECCSS--------------SEEEEEESCCC
T ss_pred eeecC----CCCceEEEEECCCCCCEEEEEecC--------------CcEEEEEccCC
Confidence 22111 01111233343 34 677887753 34888988764
No 194
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.59 E-value=1.8 Score=52.26 Aligned_cols=187 Identities=9% Similarity=0.025 Sum_probs=93.3
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
++.++++|+. + +.++.|+..+.......... .......+..-++..++.||.. ..+.+
T Consensus 972 ~g~~l~~g~~--~-------g~i~i~d~~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~s~~~d-----------g~i~v 1029 (1249)
T 3sfz_A 972 HLEYVAFGDE--D-------GAIKIIELPNNRVFSSGVGH--KKAVRHIQFTADGKTLISSSED-----------SVIQV 1029 (1249)
T ss_dssp TSSEEEEEET--T-------SCCEEEETTTTSCEEECCCC--SSCCCCEEECSSSSCEEEECSS-----------SBEEE
T ss_pred CCCEEEEEcC--C-------CCEEEEEcCCCceeeecccC--CCceEEEEECCCCCEEEEEcCC-----------CEEEE
Confidence 5667777762 2 36788888877544332211 1111111111255666777642 35888
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (643)
||+.++....+.. ....-.+++...+..++.|+.+ ..+.+||+.+.+-...-.. ..... .+
T Consensus 1030 wd~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~d---------g~v~vwd~~~~~~~~~~~~-----~~~~v-~~ 1090 (1249)
T 3sfz_A 1030 WNWQTGDYVFLQA----HQETVKDFRLLQDSRLLSWSFD---------GTVKVWNVITGRIERDFTC-----HQGTV-LS 1090 (1249)
T ss_dssp EETTTTEEECCBC----CSSCEEEEEECSSSEEEEEESS---------SEEEEEETTTTCCCEEEEC-----CSSCC-CC
T ss_pred EECCCCceEEEec----CCCcEEEEEEcCCCcEEEEECC---------CcEEEEECCCCceeEEEcc-----cCCcE-EE
Confidence 9998887664332 1112223333334344555542 4588889877653222111 11111 12
Q ss_pred EEE-eCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEecccccc
Q 006473 241 FFV-YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDM 318 (643)
Q Consensus 241 ~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~ 318 (643)
++. .++.+++.|+.++. +.+||..+.. .+.... .....-.++++. ++++++.|+.+
T Consensus 1091 ~~~s~d~~~l~s~s~d~~----------------v~iwd~~~~~--~~~~l~--~h~~~v~~~~~s~dg~~lat~~~d-- 1148 (1249)
T 3sfz_A 1091 CAISSDATKFSSTSADKT----------------AKIWSFDLLS--PLHELK--GHNGCVRCSAFSLDGILLATGDDN-- 1148 (1249)
T ss_dssp EEECSSSSSCEEECCSSC----------------CCEECSSSSS--CSBCCC--CCSSCEEEEEECSSSSEEEEEETT--
T ss_pred EEECCCCCEEEEEcCCCc----------------EEEEECCCcc--eeeeec--cCCCcEEEEEECCCCCEEEEEeCC--
Confidence 222 26667777777654 5566665433 111110 011111223332 67788888753
Q ss_pred ccCccccccccCCcEEEEECCCCc
Q 006473 319 EMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 319 ~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
..|.+||+.+.+
T Consensus 1149 ------------g~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1149 ------------GEIRIWNVSDGQ 1160 (1249)
T ss_dssp ------------SCCCEEESSSSC
T ss_pred ------------CEEEEEECCCCc
Confidence 237889987754
No 195
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=90.54 E-value=13 Score=41.86 Aligned_cols=123 Identities=13% Similarity=0.066 Sum_probs=69.5
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccCCCC------CCCceeEEEEECCEEEEEeeeecC
Q 006473 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCP------SPRSGHRMVLYKHKIIVFGGFYDT 201 (643)
Q Consensus 130 ~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P------~~Rs~h~~~~~~~~lyvfGG~~~~ 201 (643)
-++.++.||+.... ..|+.||..+++ |+.-...... ......+.++.+++||+...
T Consensus 62 P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---- 125 (668)
T 1kv9_A 62 PLFHDGVIYTSMSW------------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---- 125 (668)
T ss_dssp CEEETTEEEEEEGG------------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT----
T ss_pred CEEECCEEEEECCC------------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC----
Confidence 34569999998642 468899988774 8764321100 00012234567888887532
Q ss_pred CCceeeeccEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeC
Q 006473 202 LREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (643)
Q Consensus 202 ~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (643)
-..|+.||..+.+ |+.-...+. .......+.++.++.||+..+.... .....++.||+
T Consensus 126 ------dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~P~v~~~~v~vg~~~~~~-----------~~~g~v~a~D~ 185 (668)
T 1kv9_A 126 ------DGRLIALDAKTGKAIWSQQTTDPA---KPYSITGAPRVVKGKVIIGNGGAEY-----------GVRGFVSAYDA 185 (668)
T ss_dssp ------TSEEEEEETTTCCEEEEEECSCTT---SSCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEET
T ss_pred ------CCEEEEEECCCCCEeeeeccCCCC---CcceecCCCEEECCEEEEeCCCCCc-----------CCCCEEEEEEC
Confidence 2468999988765 876543210 1112222335568877764322110 12346899998
Q ss_pred CCC--eeEEec
Q 006473 280 RTW--EWSKVK 288 (643)
Q Consensus 280 ~t~--~W~~l~ 288 (643)
.+. .|+.-.
T Consensus 186 ~tG~~~W~~~~ 196 (668)
T 1kv9_A 186 DTGKLAWRFYT 196 (668)
T ss_dssp TTCCEEEEEES
T ss_pred CCCcEEEEecc
Confidence 765 588753
No 196
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=90.51 E-value=11 Score=36.93 Aligned_cols=123 Identities=17% Similarity=0.082 Sum_probs=60.6
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEE-ecCCCCCC--CceeeEEEEE--CCEEEEEeCccCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPP--PRSAHQAVSW--KNYLYIFGGEFTS 146 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~-l~s~~~P~--pRs~ha~~~~--~~~iyvfGG~~~~ 146 (643)
+.+++.|. +..||+.++. .+.|++||+.+.+-.. +..+. +. ...-+.++.. +..||+.......
T Consensus 37 ~~~~~s~d-g~~l~v~~~~---------~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 105 (337)
T 1pby_B 37 MVPMVAPG-GRIAYATVNK---------SESLVKIDLVTGETLGRIDLST-PEERVKSLFGAALSPDGKTLAIYESPVRL 105 (337)
T ss_dssp CCEEECTT-SSEEEEEETT---------TTEEEEEETTTCCEEEEEECCB-TTEEEECTTCEEECTTSSEEEEEEEEEEE
T ss_pred cceEEcCC-CCEEEEEeCC---------CCeEEEEECCCCCeEeeEEcCC-cccccccccceEECCCCCEEEEEeccccc
Confidence 34555552 3467776551 2478999998876543 32211 00 0011223332 4467776421100
Q ss_pred CCCCcce-ecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-C-CEEEEEeeeecCCCceeeeccEEEEEcCCCceE
Q 006473 147 PNQERFH-HYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (643)
Q Consensus 147 ~~~~~~~-~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~-~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (643)
... .+. .-+.+++||+.+.+....-.. ...-+.+++. + ++||+.+ ..+++||+.+.+-.
T Consensus 106 ~~~-~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~------------~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 106 ELT-HFEVQPTRVALYDAETLSRRKAFEA----PRQITMLAWARDGSKLYGLG------------RDLHVMDPEAGTLV 167 (337)
T ss_dssp CSS-CEEECCCEEEEEETTTTEEEEEEEC----CSSCCCEEECTTSSCEEEES------------SSEEEEETTTTEEE
T ss_pred ccc-cccccCceEEEEECCCCcEEEEEeC----CCCcceeEECCCCCEEEEeC------------CeEEEEECCCCcEe
Confidence 000 000 126799999988776543221 1112233332 3 3466651 35899999887644
No 197
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=90.47 E-value=16 Score=36.85 Aligned_cols=182 Identities=9% Similarity=0.049 Sum_probs=91.2
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
.+|+=.-...+|+.+..+ ......++... .+.+|++|-. ..+++-.-.-.+|+.+.........
T Consensus 16 ~~~~s~d~g~~W~~~~~~---~~~~~~~v~~~~~~~~~~~G~~------------g~i~~s~DgG~tW~~~~~~~~~~~~ 80 (327)
T 2xbg_A 16 GSAIPALDYNPWEAIQLP---TTATILDMSFIDRHHGWLVGVN------------ATLMETRDGGQTWEPRTLVLDHSDY 80 (327)
T ss_dssp --CCCBCSSCCEEEEECS---CSSCEEEEEESSSSCEEEEETT------------TEEEEESSTTSSCEECCCCCSCCCC
T ss_pred ceeecCCCCCCceEeecC---CCCcEEEEEECCCCcEEEEcCC------------CeEEEeCCCCCCCeECCCCCCCCCc
Confidence 444433445689988643 22333333333 5678886631 2244433334589998642111122
Q ss_pred ceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEE-eCCEEEEEcCCCCCCC
Q 006473 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV-YQDEVFLYGGYSKEVS 259 (643)
Q Consensus 181 s~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~-~~~~iyv~GG~~~~~~ 259 (643)
...++....+.+|+.|.. ..+++-.-.-.+|+.+.... +.+-..+.++. -++.+|+.|.. +.
T Consensus 81 ~~~~i~~~~~~~~~~g~~----------g~i~~S~DgG~tW~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~-g~-- 143 (327)
T 2xbg_A 81 RFNSVSFQGNEGWIVGEP----------PIMLHTTDGGQSWSQIPLDP----KLPGSPRLIKALGNGSAEMITNV-GA-- 143 (327)
T ss_dssp EEEEEEEETTEEEEEEET----------TEEEEESSTTSSCEECCCCT----TCSSCEEEEEEEETTEEEEEETT-CC--
T ss_pred cEEEEEecCCeEEEEECC----------CeEEEECCCCCCceECcccc----CCCCCeEEEEEECCCCEEEEeCC-cc--
Confidence 233444456788887531 12333222246799987541 11111233433 36788887752 11
Q ss_pred CccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEEC
Q 006473 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (643)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~ 338 (643)
+++-.=...+|+.+... .+...+++++. ++.+|++|-. ..+|+-.-
T Consensus 144 --------------v~~S~DgG~tW~~~~~~----~~~~~~~~~~~~~~~~~~~g~~---------------G~~~~S~d 190 (327)
T 2xbg_A 144 --------------IYRTKDSGKNWQALVQE----AIGVMRNLNRSPSGEYVAVSSR---------------GSFYSTWE 190 (327)
T ss_dssp --------------EEEESSTTSSEEEEECS----CCCCEEEEEECTTSCEEEEETT---------------SSEEEEEC
T ss_pred --------------EEEEcCCCCCCEEeecC----CCcceEEEEEcCCCcEEEEECC---------------CcEEEEeC
Confidence 44433346689998642 22233455554 4666665521 12555432
Q ss_pred C-CCcEEEeEe
Q 006473 339 D-NHRWYPLEL 348 (643)
Q Consensus 339 ~-t~~W~~l~~ 348 (643)
. ...|..+..
T Consensus 191 ~gG~tW~~~~~ 201 (327)
T 2xbg_A 191 PGQTAWEPHNR 201 (327)
T ss_dssp TTCSSCEEEEC
T ss_pred CCCCceeECCC
Confidence 2 568888754
No 198
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=90.39 E-value=19 Score=37.64 Aligned_cols=209 Identities=10% Similarity=0.027 Sum_probs=110.0
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~ 148 (643)
.+.+++.+ ++.||+.... .+.+++||+.++.-..+.... ...+ ++.. ++.||+.....
T Consensus 133 P~~la~d~--~g~lyv~d~~---------~~~I~~id~~~g~~~~~~~~~----~~~~-ia~~~~g~~l~~~d~~~---- 192 (409)
T 3hrp_A 133 MWGIAAVG--NNTVLAYQRD---------DPRVRLISVDDNKVTTVHPGF----KGGK-PAVTKDKQRVYSIGWEG---- 192 (409)
T ss_dssp EEEEEECS--TTEEEEEETT---------TTEEEEEETTTTEEEEEEETC----CBCB-CEECTTSSEEEEEBSST----
T ss_pred ceEEEEeC--CCCEEEEecC---------CCcEEEEECCCCEEEEeeccC----CCCc-eeEecCCCcEEEEecCC----
Confidence 34555554 6788888651 247899999988776654321 1223 2222 45677765321
Q ss_pred CCcceecCeEEEEECCCCc-EEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 149 QERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
-..+++|+..+.. ...+.....+....-+.+++. ++.||+.-+ ...+++||+.+.....+.
T Consensus 193 ------~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~----------~~~I~~~d~~~~~~~~~~ 256 (409)
T 3hrp_A 193 ------THTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS----------NKNFGRFNVKTQEVTLIK 256 (409)
T ss_dssp ------TCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT----------TCEEEEEETTTCCEEEEE
T ss_pred ------CceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC----------CCcEEEEECCCCCEEEEe
Confidence 0268999986543 233311001112222344444 578998321 246999999887755552
Q ss_pred cCCCCCCCCCccc-e-eEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCC------
Q 006473 226 PRFGSMWPSPRSG-F-QFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG------ 295 (643)
Q Consensus 226 ~~~~~~~P~~R~~-~-s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~------ 295 (643)
..... ...... + .+++. ++.||+..... +.+++|++... ...+...+..+.
T Consensus 257 ~~~~~--g~~~~~P~~~ia~~p~~g~lyv~d~~~----------------~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~ 317 (409)
T 3hrp_A 257 QLELS--GSLGTNPGPYLIYYFVDSNFYMSDQNL----------------SSVYKITPDGE-CEWFCGSATQKTVQDGLR 317 (409)
T ss_dssp ECCCC--SCCCCSSCCEEEEETTTTEEEEEETTT----------------TEEEEECTTCC-EEEEEECTTCCSCBCEEG
T ss_pred ccccc--CCCCCCccccEEEeCCCCEEEEEeCCC----------------CEEEEEecCCC-EEEEEeCCCCCCcCCCcc
Confidence 21100 111111 1 34444 68899875433 24888887654 222221110000
Q ss_pred --C--ceeeEEEEE-CCeEEEecc-ccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 296 --P--RAGFSMCVH-KKRALLFGG-VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 296 --~--R~g~s~~~~-~~~iyvfGG-~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
. ..-.++++. ++.||+... . .+.|.+|++.+.....+.-
T Consensus 318 ~~~~~~~P~gia~d~dG~lyvad~~~--------------~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 318 EEALFAQPNGMTVDEDGNFYIVDGFK--------------GYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp GGCBCSSEEEEEECTTCCEEEEETTT--------------TCEEEEEETTTTEEEEEEE
T ss_pred cccEeCCCeEEEEeCCCCEEEEeCCC--------------CCEEEEEECCCCEEEEEeC
Confidence 0 112344444 567888753 2 2469999977777665554
No 199
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=90.29 E-value=14 Score=35.92 Aligned_cols=111 Identities=12% Similarity=0.155 Sum_probs=53.8
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCCCCCCceeeEEEEE-C---CEEEEEeCccCCC
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSW-K---NYLYIFGGEFTSP 147 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P~pRs~ha~~~~-~---~~iyvfGG~~~~~ 147 (643)
+...| ++.+++.|+. + ..+.+||+.+. .|+.+.... .....-.++.+ . +.+++.|+..
T Consensus 17 ~~~~~--~~~~l~~~~~--d-------g~i~iw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~d~~~l~s~~~d--- 80 (351)
T 3f3f_A 17 VVYDF--YGRHVATCSS--D-------QHIKVFKLDKDTSNWELSDSWR--AHDSSIVAIDWASPEYGRIIASASYD--- 80 (351)
T ss_dssp EEECS--SSSEEEEEET--T-------SEEEEEEECSSSCCEEEEEEEE--CCSSCEEEEEECCGGGCSEEEEEETT---
T ss_pred EEEcC--CCCEEEEeeC--C-------CeEEEEECCCCCCcceecceec--cCCCcEEEEEEcCCCCCCEEEEEcCC---
Confidence 44444 5677777772 2 35777777643 444332111 11111222233 2 6677777753
Q ss_pred CCCcceecCeEEEEECCCC-------cEEEeccCCCCCCCceeEEEEE--C--CEEEEEeeeecCCCceeeeccEEEEEc
Q 006473 148 NQERFHHYKDFWMLDLKTN-------QWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDL 216 (643)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~-------~W~~~~~~g~P~~Rs~h~~~~~--~--~~lyvfGG~~~~~~~~~~~~dv~~yD~ 216 (643)
..+.+||+.+. .|..+... ......-..+.+ . +.+++.|+.+ ..+.+||+
T Consensus 81 --------g~v~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~d---------g~v~iwd~ 141 (351)
T 3f3f_A 81 --------KTVKLWEEDPDQEECSGRRWNKLCTL--NDSKGSLYSVKFAPAHLGLKLACLGND---------GILRLYDA 141 (351)
T ss_dssp --------SCEEEEEECTTSCTTSSCSEEEEEEE--CCCSSCEEEEEECCGGGCSEEEEEETT---------CEEEEEEC
T ss_pred --------CeEEEEecCCCcccccccCcceeeee--cccCCceeEEEEcCCCCCcEEEEecCC---------CcEEEecC
Confidence 34667776653 34433321 111111222333 2 5666666642 45788887
Q ss_pred CCC
Q 006473 217 DQF 219 (643)
Q Consensus 217 ~t~ 219 (643)
.+.
T Consensus 142 ~~~ 144 (351)
T 3f3f_A 142 LEP 144 (351)
T ss_dssp SST
T ss_pred CCh
Confidence 654
No 200
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=90.16 E-value=12 Score=41.21 Aligned_cols=124 Identities=13% Similarity=0.159 Sum_probs=68.6
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEEC-CCC--cEEEeccCCC---CCC---CceeEEEEECCEEEEEeeeec
Q 006473 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL-KTN--QWEQLNLKGC---PSP---RSGHRMVLYKHKIIVFGGFYD 200 (643)
Q Consensus 130 ~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~-~t~--~W~~~~~~g~---P~~---Rs~h~~~~~~~~lyvfGG~~~ 200 (643)
-++.++.||+.... ...++.||. .++ .|+.-..... +.. ....+.++.+++||+...
T Consensus 58 P~v~~g~vyv~~~~-----------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--- 123 (571)
T 2ad6_A 58 PLVIGDMMYVHSAF-----------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA--- 123 (571)
T ss_dssp CEEETTEEEEECST-----------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---
T ss_pred cEEECCEEEEEeCC-----------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC---
Confidence 34569999998652 146899998 776 4886433110 000 112234667888887632
Q ss_pred CCCceeeeccEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEe
Q 006473 201 TLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (643)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (643)
...|+.+|..+.+ |+.-..... .......+.++.++.||+-.+.... .....++.||
T Consensus 124 -------dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~P~v~~g~v~vg~~~~~~-----------~~~g~v~a~D 182 (571)
T 2ad6_A 124 -------NGHLLALDAKTGKINWEVEVCDPK---VGSTLTQAPFVAKDTVLMGCSGAEL-----------GVRGAVNAFD 182 (571)
T ss_dssp -------TSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEEETTEEEEECBCGGG-----------TCCCEEEEEE
T ss_pred -------CCEEEEEECCCCCEEEEecCCCCC---ccceeccCCEEECCEEEEEecCCcc-----------CCCCEEEEEE
Confidence 2468999998764 875432100 0001112234558887765432110 1124588999
Q ss_pred CCCC--eeEEec
Q 006473 279 PRTW--EWSKVK 288 (643)
Q Consensus 279 ~~t~--~W~~l~ 288 (643)
+.+. .|+.-.
T Consensus 183 ~~tG~~~W~~~~ 194 (571)
T 2ad6_A 183 LKTGELKWRAFA 194 (571)
T ss_dssp TTTCCEEEEEES
T ss_pred CCCCcEEEEEcc
Confidence 8654 687653
No 201
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=90.14 E-value=14 Score=35.83 Aligned_cols=29 Identities=7% Similarity=0.020 Sum_probs=20.5
Q ss_pred CCeEEEeccccccccCccccccccCCcEEEEECCCC-cEEEeEe
Q 006473 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-RWYPLEL 348 (643)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~-~W~~l~~ 348 (643)
++++++.||.. +.|.+|++.+. .|..+..
T Consensus 317 ~~~~l~s~~~d--------------g~v~iw~~~~~~~~~~~~~ 346 (351)
T 3f3f_A 317 TGTILSSAGDD--------------GKVRLWKATYSNEFKCMSV 346 (351)
T ss_dssp SSCCEEEEETT--------------SCEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEecCC--------------CcEEEEecCcCcchhheee
Confidence 56677777753 34889998874 7877765
No 202
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=90.07 E-value=6.7 Score=40.09 Aligned_cols=206 Identities=12% Similarity=0.028 Sum_probs=95.5
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCC----C-cEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK----Q-EWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFT 145 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~----~-~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~ 145 (643)
++...| ++.+++.|+. -..+.+|++.+ . .-..+... ...-.+++.. ++.+++.|+..
T Consensus 72 ~~~~s~--~~~~l~~~~~---------dg~v~vw~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~~~d- 135 (416)
T 2pm9_A 72 DLDWSH--NNKIIAGALD---------NGSLELYSTNEANNAINSMARFSNH----SSSVKTVKFNAKQDNVLASGGNN- 135 (416)
T ss_dssp EEEECS--SSSCEEEEES---------SSCEEEECCSSTTSCCCEEEECCCS----SSCCCEEEECSSSTTBEEEECSS-
T ss_pred EEEECC--CCCeEEEEcc---------CCeEEEeecccccccccchhhccCC----ccceEEEEEcCCCCCEEEEEcCC-
Confidence 344444 5667777772 23678888876 2 22222211 1111222222 26677777753
Q ss_pred CCCCCcceecCeEEEEECCCCc------EEEeccCCCCCCCceeEEEEE-C-CEEEEEeeeecCCCceeeeccEEEEEcC
Q 006473 146 SPNQERFHHYKDFWMLDLKTNQ------WEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (643)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~------W~~~~~~g~P~~Rs~h~~~~~-~-~~lyvfGG~~~~~~~~~~~~dv~~yD~~ 217 (643)
..+.+||+.+.. -.............-.+++.. + +.+++.|+.+ ..+.+||+.
T Consensus 136 ----------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~v~iwd~~ 196 (416)
T 2pm9_A 136 ----------GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS---------NFASIWDLK 196 (416)
T ss_dssp ----------SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS---------SCEEEEETT
T ss_pred ----------CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC---------CCEEEEECC
Confidence 357788887664 111100000011111222222 2 5677777642 458899998
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCC
Q 006473 218 QFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG 295 (643)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 295 (643)
+......-............-.+++.. +..+++.|+.++. ...+.+||+.+..-. +.... ...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-------------~~~i~~~d~~~~~~~-~~~~~-~~~ 261 (416)
T 2pm9_A 197 AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN-------------DPSILIWDLRNANTP-LQTLN-QGH 261 (416)
T ss_dssp TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS-------------SCCCCEEETTSTTSC-SBCCC-SCC
T ss_pred CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC-------------CceEEEEeCCCCCCC-cEEee-cCc
Confidence 765433322210000001112223333 2357777766541 012667777653210 11100 001
Q ss_pred CceeeEEEEE--CCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 296 PRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 296 ~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
...-.++++. ++.+++.|+.. +.|.+||+.+.+
T Consensus 262 ~~~v~~~~~s~~~~~~l~s~~~d--------------g~v~~wd~~~~~ 296 (416)
T 2pm9_A 262 QKGILSLDWCHQDEHLLLSSGRD--------------NTVLLWNPESAE 296 (416)
T ss_dssp SSCEEEEEECSSCSSCEEEEESS--------------SEEEEECSSSCC
T ss_pred cCceeEEEeCCCCCCeEEEEeCC--------------CCEEEeeCCCCc
Confidence 1222334443 57777777753 348889887764
No 203
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=89.93 E-value=19 Score=36.76 Aligned_cols=185 Identities=6% Similarity=-0.089 Sum_probs=91.5
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
+.+.++|+.+.+........ .. -.+++.- ++.+++.|+. +.+.+++..+..............
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~--~~--V~~v~fspdg~~l~s~s~------------~~~~~~~~~~~~~~~~~~~~~~~~ 220 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETR--GE--VKDLHFSTDGKVVAYITG------------SSLEVISTVTGSCIARKTDFDKNW 220 (365)
T ss_dssp CEEEEEETTTTEEEEEEECS--SC--CCEEEECTTSSEEEEECS------------SCEEEEETTTCCEEEEECCCCTTE
T ss_pred CEEEEeECCCCcEEEEeCCC--Cc--eEEEEEccCCceEEeccc------------eeEEEEEeccCcceeeeecCCCCC
Confidence 46788999888765432211 11 1222222 5566666542 346677777776543322111111
Q ss_pred CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCC
Q 006473 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (643)
Q Consensus 180 Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~ 258 (643)
........-++.+++.++..... ...++.++.....+......... .....-.+++.. ++.+++.|+.++.
T Consensus 221 ~v~~v~fspdg~~l~~~s~d~~~-----~~~i~~~~~~~~~~~~~~~~~~~--~~~~~V~~~~~Spdg~~lasgs~D~~- 292 (365)
T 4h5i_A 221 SLSKINFIADDTVLIAASLKKGK-----GIVLTKISIKSGNTSVLRSKQVT--NRFKGITSMDVDMKGELAVLASNDNS- 292 (365)
T ss_dssp EEEEEEEEETTEEEEEEEESSSC-----CEEEEEEEEETTEEEEEEEEEEE--SSCSCEEEEEECTTSCEEEEEETTSC-
T ss_pred CEEEEEEcCCCCEEEEEecCCcc-----eeEEeecccccceecceeeeeec--CCCCCeEeEEECCCCCceEEEcCCCE-
Confidence 11111222377777777764432 22466677666555433221000 011111122222 7788888887765
Q ss_pred CCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEE
Q 006473 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (643)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (643)
+.+||+.+.+-...-..+. ...-.++++. ++++++-|+.+ +.|-+|+
T Consensus 293 ---------------V~iwd~~~~~~~~~~~~gH---~~~V~~v~fSpdg~~laS~S~D--------------~tvrvw~ 340 (365)
T 4h5i_A 293 ---------------IALVKLKDLSMSKIFKQAH---SFAITEVTISPDSTYVASVSAA--------------NTIHIIK 340 (365)
T ss_dssp ---------------EEEEETTTTEEEEEETTSS---SSCEEEEEECTTSCEEEEEETT--------------SEEEEEE
T ss_pred ---------------EEEEECCCCcEEEEecCcc---cCCEEEEEECCCCCEEEEEeCC--------------CeEEEEE
Confidence 7889987765332211111 1111233333 67777777754 3588888
Q ss_pred CCCC
Q 006473 338 LDNH 341 (643)
Q Consensus 338 ~~t~ 341 (643)
+..+
T Consensus 341 ip~~ 344 (365)
T 4h5i_A 341 LPLN 344 (365)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 7543
No 204
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=89.67 E-value=5.7 Score=39.53 Aligned_cols=140 Identities=9% Similarity=-0.029 Sum_probs=68.6
Q ss_pred ccEEEEECCCCcE-EEecCCCCCCC-ceeeEEEEE-C----CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEecc
Q 006473 101 GDLYRYDVEKQEW-KVISSPNSPPP-RSAHQAVSW-K----NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (643)
Q Consensus 101 ndv~~yd~~~~~W-~~l~s~~~P~p-Rs~ha~~~~-~----~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (643)
+.+.+|+..+... ..+.....+.. ..-.+++.. + +.+++.|+.. ..+.+||+.+.+-...-.
T Consensus 44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----------g~i~v~d~~~~~~~~~~~ 112 (366)
T 3k26_A 44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR-----------GIIRIINPITMQCIKHYV 112 (366)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT-----------CEEEEECTTTCCEEEEEE
T ss_pred CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC-----------CEEEEEEchhceEeeeec
Confidence 3578888886543 23321111111 112222222 3 5677777752 357888887765432211
Q ss_pred CCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEE
Q 006473 174 KGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFL 250 (643)
Q Consensus 174 ~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv 250 (643)
.. ...-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-.... .....-.+++.. ++..++
T Consensus 113 --~~-~~~i~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~ 177 (366)
T 3k26_A 113 --GH-GNAINELKFHPRDPNLLLSVSKD---------HALRLWNIQTDTLVAIFGGVE---GHRDEVLSADYDLLGEKIM 177 (366)
T ss_dssp --SC-CSCEEEEEECSSCTTEEEEEETT---------SCEEEEETTTTEEEEEECSTT---SCSSCEEEEEECTTSSEEE
T ss_pred --CC-CCcEEEEEECCCCCCEEEEEeCC---------CeEEEEEeecCeEEEEecccc---cccCceeEEEECCCCCEEE
Confidence 01 1111222222 45677777742 468889998765433321100 111112223332 566777
Q ss_pred EcCCCCCCCCccCCCCCCceeeeEEEEeCCCC
Q 006473 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (643)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (643)
.|+.++. +.+||+.+.
T Consensus 178 ~~~~dg~----------------i~i~d~~~~ 193 (366)
T 3k26_A 178 SCGMDHS----------------LKLWRINSK 193 (366)
T ss_dssp EEETTSC----------------EEEEESCSH
T ss_pred EecCCCC----------------EEEEECCCC
Confidence 7777655 777887654
No 205
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=89.41 E-value=29 Score=38.24 Aligned_cols=191 Identities=15% Similarity=0.118 Sum_probs=95.9
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEE-EecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCe
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
++.+||... ..+.|+++|+.+++-. .+..+ ..-|.++.. +..+|+.+. -+.
T Consensus 166 ~~~~~V~~~---------~~~~V~viD~~t~~v~~~i~~g-----~~p~~v~~SpDGr~lyv~~~------------dg~ 219 (567)
T 1qks_A 166 ENLFSVTLR---------DAGQIALIDGSTYEIKTVLDTG-----YAVHISRLSASGRYLFVIGR------------DGK 219 (567)
T ss_dssp GGEEEEEET---------TTTEEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEEET------------TSE
T ss_pred CceEEEEeC---------CCCeEEEEECCCCeEEEEEeCC-----CCccceEECCCCCEEEEEcC------------CCe
Confidence 467777655 1358999999987654 34332 223444433 567887642 146
Q ss_pred EEEEECC--CCcE-EEeccCCCCCCCceeEEEEE-----CC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC
Q 006473 158 FWMLDLK--TNQW-EQLNLKGCPSPRSGHRMVLY-----KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 158 v~~yD~~--t~~W-~~~~~~g~P~~Rs~h~~~~~-----~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
+.+||+. +.+- ..+.. ...-..+++. ++ ++|+..- ..+.+.++|..+.+=...-+..
T Consensus 220 V~viD~~~~t~~~v~~i~~-----G~~P~~ia~s~~~~pDGk~l~v~n~---------~~~~v~ViD~~t~~~~~~i~~~ 285 (567)
T 1qks_A 220 VNMIDLWMKEPTTVAEIKI-----GSEARSIETSKMEGWEDKYAIAGAY---------WPPQYVIMDGETLEPKKIQSTR 285 (567)
T ss_dssp EEEEETTSSSCCEEEEEEC-----CSEEEEEEECCSTTCTTTEEEEEEE---------ETTEEEEEETTTCCEEEEEECC
T ss_pred EEEEECCCCCCcEeEEEec-----CCCCceeEEccccCCCCCEEEEEEc---------cCCeEEEEECCCCcEEEEEecc
Confidence 9999995 4432 22222 2222233333 33 6666533 2367888897775432221110
Q ss_pred C------CCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEE
Q 006473 229 G------SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (643)
Q Consensus 229 ~------~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~ 302 (643)
. .-.|.+|.....+...+..+++-=. ....++.+|........+... +..+.-|.+
T Consensus 286 ~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~---------------~~g~v~~vd~~~~~~~~v~~i---~~~~~~~d~ 347 (567)
T 1qks_A 286 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVK---------------ETGKILLVDYTDLNNLKTTEI---SAERFLHDG 347 (567)
T ss_dssp EECTTTCCEESCCCEEEEEECSSSSEEEEEET---------------TTTEEEEEETTCSSEEEEEEE---ECCSSEEEE
T ss_pred ccccccccccCCCceEEEEEcCCCCEEEEEec---------------CCCeEEEEecCCCccceeeee---eccccccCc
Confidence 0 0013344443333333223322111 113478888776654444332 334555555
Q ss_pred EEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 303 CVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 303 ~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.+- +++.+++... ..|.|.++|+.+++
T Consensus 348 ~~~pdgr~~~va~~-------------~sn~V~ViD~~t~k 375 (567)
T 1qks_A 348 GLDGSHRYFITAAN-------------ARNKLVVIDTKEGK 375 (567)
T ss_dssp EECTTSCEEEEEEG-------------GGTEEEEEETTTTE
T ss_pred eECCCCCEEEEEeC-------------CCCeEEEEECCCCc
Confidence 544 3443333221 14679999998875
No 206
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=89.29 E-value=3.4 Score=46.41 Aligned_cols=113 Identities=9% Similarity=-0.029 Sum_probs=57.7
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
.++++|+.+++-..+..... ........+.+ +++.++++........ ......+|++|+.+.+...+........
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~-~~~~~v~~~~~SpDg~~l~~~~~~~~~~~--~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 114 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKK-IESLRAIRYEISPDREYALFSYNVEPIYQ--HSYTGYYVLSKIPHGDPQSLDPPEVSNA 114 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTT-TTTTTCSEEEECTTSSEEEEEESCCCCSS--SCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred CEEEEECCCCcEEEEecccc-ccccccceEEECCCCCEEEEEecCcccee--ecceeeEEEEECCCCceEeccCCccccc
Confidence 68888988876655543221 10001122233 5555555543222111 1234789999999887665544211111
Q ss_pred CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 180 Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
+..+....-+++.++|+.. ..|+++|+.+.....+...
T Consensus 115 ~~~~~~~SPdG~~la~~~~----------~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 115 KLQYAGWGPKGQQLIFIFE----------NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp CCSBCCBCSSTTCEEEEET----------TEEEEESSSSSCCEEEECC
T ss_pred cccccEECCCCCEEEEEEC----------CeEEEEECCCCceEEEecC
Confidence 1111111225555555442 3688899888776666543
No 207
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=89.19 E-value=19 Score=35.93 Aligned_cols=104 Identities=4% Similarity=-0.113 Sum_probs=57.2
Q ss_pred CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCC
Q 006473 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEK 267 (643)
Q Consensus 189 ~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~ 267 (643)
.+.+++.|+.+ ..+.+||+.+..-..+... .....-.+++.. ++.+++.|+.++.
T Consensus 138 ~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~-----~~~~~i~~~~~~pdg~~lasg~~dg~---------- 193 (343)
T 3lrv_A 138 NTEYFIWADNR---------GTIGFQSYEDDSQYIVHSA-----KSDVEYSSGVLHKDSLLLALYSPDGI---------- 193 (343)
T ss_dssp -CCEEEEEETT---------CCEEEEESSSSCEEEEECC-----CSSCCCCEEEECTTSCEEEEECTTSC----------
T ss_pred CCCEEEEEeCC---------CcEEEEECCCCcEEEEEec-----CCCCceEEEEECCCCCEEEEEcCCCE----------
Confidence 44566667642 4588899887765443322 111112233333 6778888887765
Q ss_pred CceeeeEEEEeCCCCeeE--EeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 268 GIIHSDLWSLDPRTWEWS--KVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~--~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
+.+||+.+..-. .+.. .....-.++++. ++..++.|+ . +.|.+||+.+.
T Consensus 194 ------i~iwd~~~~~~~~~~~~~----~h~~~v~~l~fs~~g~~l~s~~-~--------------~~v~iwd~~~~ 245 (343)
T 3lrv_A 194 ------LDVYNLSSPDQASSRFPV----DEEAKIKEVKFADNGYWMVVEC-D--------------QTVVCFDLRKD 245 (343)
T ss_dssp ------EEEEESSCTTSCCEECCC----CTTSCEEEEEECTTSSEEEEEE-S--------------SBEEEEETTSS
T ss_pred ------EEEEECCCCCCCccEEec----cCCCCEEEEEEeCCCCEEEEEe-C--------------CeEEEEEcCCC
Confidence 788898776532 2211 011122233333 566666666 2 24899998764
No 208
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=89.09 E-value=11 Score=37.68 Aligned_cols=112 Identities=9% Similarity=-0.075 Sum_probs=57.9
Q ss_pred ccEEEEECCCCcEEEecCCCCC----------------CCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEE
Q 006473 101 GDLYRYDVEKQEWKVISSPNSP----------------PPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLD 162 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P----------------~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD 162 (643)
+.+++|++.+..++.+...... ....-++++.. ++.|||.... ..+++||
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~------------~~i~~~d 107 (322)
T 2fp8_A 40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY------------YHLSVVG 107 (322)
T ss_dssp SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT------------TEEEEEC
T ss_pred CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC------------CCEEEEe
Confidence 4789999988877755421100 00112445554 5789987431 3478899
Q ss_pred CCCCcEEEeccCCC-CCCCceeEEEEE--CCEEEEEeeeecCCC-c-------eeeeccEEEEEcCCCceEEe
Q 006473 163 LKTNQWEQLNLKGC-PSPRSGHRMVLY--KHKIIVFGGFYDTLR-E-------VRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 163 ~~t~~W~~~~~~g~-P~~Rs~h~~~~~--~~~lyvfGG~~~~~~-~-------~~~~~dv~~yD~~t~~W~~v 224 (643)
+.++..+.+..... .....-+.+++- ++.||+.-....... . ......|++||+.+.....+
T Consensus 108 ~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 108 SEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp TTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 88776655532110 011122334443 467887532110000 0 00125699999987765544
No 209
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=88.98 E-value=18 Score=35.44 Aligned_cols=111 Identities=12% Similarity=0.082 Sum_probs=55.3
Q ss_pred eEEEEeccCCCE-EEEEcceecCCCCceeeccEEEEEC-CCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCC
Q 006473 72 CSLNINPLKETE-LILYGGEFYNGNKTYVYGDLYRYDV-EKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 72 ~s~~~~~~~~~~-lyvfGG~~~~g~~~~~~ndv~~yd~-~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~ 149 (643)
.++...| ++. +++.|+. -+.+++||+ .+.....+.... ....-.+++...+.+++.|+..
T Consensus 60 ~~~~~~~--~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~l~s~~~d----- 121 (342)
T 1yfq_A 60 LCCNFID--NTDLQIYVGTV---------QGEILKVDLIGSPSFQALTNNE--ANLGICRICKYGDDKLIAASWD----- 121 (342)
T ss_dssp EEEEEEE--SSSEEEEEEET---------TSCEEEECSSSSSSEEECBSCC--CCSCEEEEEEETTTEEEEEETT-----
T ss_pred EEEEECC--CCCcEEEEEcC---------CCeEEEEEeccCCceEeccccC--CCCceEEEEeCCCCEEEEEcCC-----
Confidence 3444554 566 7777772 247889999 888776654310 1111222233335555566542
Q ss_pred CcceecCeEEEEECCCCc-------EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 150 ERFHHYKDFWMLDLKTNQ-------WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~-------W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
..+.+||+.+.. ...+.. ......-.+++...+. ++.|+. -..+.+||+.+
T Consensus 122 ------~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~-l~~~~~---------d~~i~i~d~~~ 179 (342)
T 1yfq_A 122 ------GLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTNSSR-LIVGMN---------NSQVQWFRLPL 179 (342)
T ss_dssp ------SEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEEEEECSSE-EEEEES---------TTEEEEEESSC
T ss_pred ------CeEEEEcccccccccccccCCeeeE--EeeCCceEEEEecCCc-EEEEeC---------CCeEEEEECCc
Confidence 356677765300 111211 1212222233334555 555543 24688899877
No 210
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=88.80 E-value=3.4 Score=41.35 Aligned_cols=112 Identities=10% Similarity=0.075 Sum_probs=55.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE---CCEEEEEeCccCCCCCCcceecCe
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~---~~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
++.+++.|+. + +.+.+||+.++....+..... ....-.+++.. ++.+++.|+.. ..
T Consensus 24 ~g~~lasgs~--D-------~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~~l~s~s~D-----------~~ 82 (316)
T 3bg1_A 24 YGTRLATCSS--D-------RSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGNILASCSYD-----------RK 82 (316)
T ss_dssp GGCEEEEEET--T-------TEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSSCEEEEETT-----------SC
T ss_pred CCCEEEEEeC--C-------CeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCCEEEEEECC-----------CE
Confidence 5677777772 2 357778877765432221100 01111122221 25667777643 34
Q ss_pred EEEEECCCCcEEEeccCCCCCCCceeEEEEE--C--CEEEEEeeeecCCCceeeeccEEEEEcCCC-ceEEe
Q 006473 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEI 224 (643)
Q Consensus 158 v~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~--~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~-~W~~v 224 (643)
+.++|+.+..|..+.. .......-.++.+ + +.+++.|+.+ ..+.+||+... .|...
T Consensus 83 v~iWd~~~~~~~~~~~--~~~h~~~V~~v~~~p~~~g~~lasgs~D---------~~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 83 VIIWREENGTWEKSHE--HAGHDSSVNSVCWAPHDYGLILACGSSD---------GAISLLTYTGEGQWEVK 143 (316)
T ss_dssp EEEECCSSSCCCEEEE--ECCCSSCCCEEEECCTTTCSCEEEECSS---------SCEEEEEECSSSCEEEC
T ss_pred EEEEECCCCcceEEEE--ccCCCCceEEEEECCCCCCcEEEEEcCC---------CCEEEEecCCCCCccee
Confidence 7788888877654432 1111111122333 2 4566666653 34666777654 46543
No 211
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=88.77 E-value=9.7 Score=45.78 Aligned_cols=139 Identities=12% Similarity=0.018 Sum_probs=70.0
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCc
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~ 151 (643)
+++.| ++.+++.||. -+.+.+||+.+.+-...-... .....++.+ ++.+++.|+..
T Consensus 621 ~~~s~--~~~~l~s~~~---------d~~i~vw~~~~~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~~~d------- 678 (1249)
T 3sfz_A 621 ACFSQ--DGQRIASCGA---------DKTLQVFKAETGEKLLDIKAH----EDEVLCCAFSSDDSYIATCSAD------- 678 (1249)
T ss_dssp EEECT--TSSEEEEEET---------TSCEEEEETTTCCEEEEECCC----SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEECC--CCCEEEEEeC---------CCeEEEEECCCCCEEEEeccC----CCCEEEEEEecCCCEEEEEeCC-------
Confidence 34444 5777777772 246889999887654322211 112222333 55666666642
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE----CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~----~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
..+.+||+.+++....-. .+ ...-.++.+ ++.+++.|+. -..+.+||+.+......-..
T Consensus 679 ----~~v~vwd~~~~~~~~~~~--~~--~~~v~~~~~~~~~~~~~l~sg~~---------d~~v~vwd~~~~~~~~~~~~ 741 (1249)
T 3sfz_A 679 ----KKVKIWDSATGKLVHTYD--EH--SEQVNCCHFTNKSNHLLLATGSN---------DFFLKLWDLNQKECRNTMFG 741 (1249)
T ss_dssp ----SEEEEEETTTCCEEEEEE--CC--SSCEEEEEECSSSSCCEEEEEET---------TSCEEEEETTSSSEEEEECC
T ss_pred ----CeEEEEECCCCceEEEEc--CC--CCcEEEEEEecCCCceEEEEEeC---------CCeEEEEECCCcchhheecC
Confidence 458889998876543322 11 111222333 2334555543 24588889887654332211
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEcCCCCC
Q 006473 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~ 257 (643)
. ..+ -.+++.. ++.+++.|+.++.
T Consensus 742 h----~~~--v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 742 H----TNS--VNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp C----SSC--EEEEEECSSTTEEEEEESSSE
T ss_pred C----CCC--EEEEEEecCCCEEEEEECCCe
Confidence 0 111 1122222 5667777776554
No 212
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=88.73 E-value=2.7 Score=41.79 Aligned_cols=68 Identities=16% Similarity=0.217 Sum_probs=40.5
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv 211 (643)
++.+|+.++. -+.++++|+.+++....-. .+....-+.+++. ++.+|+.+.. ...+
T Consensus 10 ~~~~~v~~~~-----------~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~~~v~~~~---------~~~i 67 (349)
T 1jmx_B 10 GHEYMIVTNY-----------PNNLHVVDVASDTVYKSCV--MPDKFGPGTAMMAPDNRTAYVLNNH---------YGDI 67 (349)
T ss_dssp TCEEEEEEET-----------TTEEEEEETTTTEEEEEEE--CSSCCSSCEEEECTTSSEEEEEETT---------TTEE
T ss_pred CCEEEEEeCC-----------CCeEEEEECCCCcEEEEEe--cCCCCCCceeEECCCCCEEEEEeCC---------CCcE
Confidence 5678887764 2578999999887654322 1211112333333 3467776532 3569
Q ss_pred EEEEcCCCceEE
Q 006473 212 YVFDLDQFKWQE 223 (643)
Q Consensus 212 ~~yD~~t~~W~~ 223 (643)
++||+.+.+...
T Consensus 68 ~~~d~~t~~~~~ 79 (349)
T 1jmx_B 68 YGIDLDTCKNTF 79 (349)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEeCCCCcEEE
Confidence 999998876543
No 213
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=88.64 E-value=19 Score=35.27 Aligned_cols=181 Identities=8% Similarity=-0.021 Sum_probs=88.4
Q ss_pred CceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCC-cEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCC
Q 006473 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~-~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~ 147 (643)
..|.+.+.| +++||+.+. +.++.||+... .|+.-. +.....+++... ++.+++.....
T Consensus 38 ~~~~~~~~p--dG~ilvs~~-----------~~V~~~d~~G~~~W~~~~----~~~~~~~~~~~~~dG~~lv~~~~~--- 97 (276)
T 3no2_A 38 ECNSVAATK--AGEILFSYS-----------KGAKMITRDGRELWNIAA----PAGCEMQTARILPDGNALVAWCGH--- 97 (276)
T ss_dssp CCCEEEECT--TSCEEEECB-----------SEEEEECTTSCEEEEEEC----CTTCEEEEEEECTTSCEEEEEEST---
T ss_pred CCcCeEECC--CCCEEEeCC-----------CCEEEECCCCCEEEEEcC----CCCccccccEECCCCCEEEEecCC---
Confidence 345666666 677887332 35899999332 366432 111223444444 55555553310
Q ss_pred CCCcceecCeEEEEECCCCc-EEEeccCCCCCC--CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCC-CceEE
Q 006473 148 NQERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQE 223 (643)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~--Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t-~~W~~ 223 (643)
...++.+|+.... |+.....+.+.+ .........++.+++.... ...|.+||+.- ..|+.
T Consensus 98 -------~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---------~~~v~~~d~~G~~~w~~ 161 (276)
T 3no2_A 98 -------PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---------TSEVREIAPNGQLLNSV 161 (276)
T ss_dssp -------TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT---------TTEEEEECTTSCEEEEE
T ss_pred -------CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC---------CCEEEEECCCCCEEEEE
Confidence 1357778874442 443211111111 1111222334555443321 24688898872 23654
Q ss_pred eccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC--CeeEEeccCCCCCCCce--
Q 006473 224 IKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRA-- 298 (643)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~l~~~g~~P~~R~-- 298 (643)
-... .+ +++... ++.++|.+.... .++.||+.+ ..|+.-... .+..|.
T Consensus 162 ~~~~------~~---~~~~~~~~g~~~v~~~~~~----------------~v~~~d~~tG~~~w~~~~~~--~~~~~l~~ 214 (276)
T 3no2_A 162 KLSG------TP---FSSAFLDNGDCLVACGDAH----------------CFVQLNLESNRIVRRVNAND--IEGVQLFF 214 (276)
T ss_dssp ECSS------CC---CEEEECTTSCEEEECBTTS----------------EEEEECTTTCCEEEEEEGGG--SBSCCCSE
T ss_pred ECCC------Cc---cceeEcCCCCEEEEeCCCC----------------eEEEEeCcCCcEEEEecCCC--CCCccccc
Confidence 3321 11 123333 677777765432 288999874 467765321 121122
Q ss_pred eeEEEEE-CCeEEEec
Q 006473 299 GFSMCVH-KKRALLFG 313 (643)
Q Consensus 299 g~s~~~~-~~~iyvfG 313 (643)
-.++++. ++.+||..
T Consensus 215 ~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 215 VAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred cccceEcCCCCEEEEe
Confidence 2334444 78888876
No 214
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=88.29 E-value=17 Score=35.58 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=37.6
Q ss_pred CEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC--CeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCc
Q 006473 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKG 322 (643)
Q Consensus 246 ~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~ 322 (643)
+.+++.|+.++. +.++|+.+ ..|........ .....-.+++.. ++.+++.||..
T Consensus 219 ~~~las~s~D~~----------------v~iWd~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~las~~~D------ 275 (297)
T 2pm7_B 219 RSYMASVSQDRT----------------CIIWTQDNEQGPWKKTLLKEE-KFPDVLWRASWSLSGNVLALSGGD------ 275 (297)
T ss_dssp SEEEEEEETTSC----------------EEEEEESSTTSCCEEEESSSS-CCSSCEEEEEECSSSCCEEEEETT------
T ss_pred ceEEEEEECCCc----------------EEEEEeCCCCCccceeeeecc-cCCCcEEEEEECCCCCEEEEEcCC------
Confidence 478888887765 55555543 44654322100 111222334443 57777777753
Q ss_pred cccccccCCcEEEEECC-CCcEEEeEe
Q 006473 323 DVIMSLFLNELYGFQLD-NHRWYPLEL 348 (643)
Q Consensus 323 ~~~~~~~~ndl~~yd~~-t~~W~~l~~ 348 (643)
+.|.+|++. .+.|..+..
T Consensus 276 --------~~v~lw~~~~~g~w~~~~~ 294 (297)
T 2pm7_B 276 --------NKVTLWKENLEGKWEPAGE 294 (297)
T ss_dssp --------SCEEEEEECTTSCEEEC--
T ss_pred --------CcEEEEEECCCCcEEeccc
Confidence 236777765 457887653
No 215
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=88.23 E-value=13 Score=38.89 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=12.8
Q ss_pred eeeEEEEE-CCeEEEecc
Q 006473 298 AGFSMCVH-KKRALLFGG 314 (643)
Q Consensus 298 ~g~s~~~~-~~~iyvfGG 314 (643)
..|++++. ++.+|.+|-
T Consensus 338 ~~hs~alt~~G~v~~wG~ 355 (406)
T 4d9s_A 338 WRHTLAVTERNNVFAWGR 355 (406)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred CCeEEEEeCCCCEEEecC
Confidence 45777777 688999984
No 216
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=88.19 E-value=28 Score=37.72 Aligned_cols=138 Identities=9% Similarity=0.025 Sum_probs=71.1
Q ss_pred CeEEEEEC--CCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCC
Q 006473 156 KDFWMLDL--KTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (643)
Q Consensus 156 ~dv~~yD~--~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (643)
..+|.+++ ....- .+.. .+ .. ...+... ++.+++..+.. +.+.+||+.+..-..+...
T Consensus 90 ~~l~~~~~~~~g~~~-~l~~--~~-~~-~~~~~s~dg~~~~~~s~~~---------~~~~l~d~~~g~~~~l~~~----- 150 (582)
T 3o4h_A 90 HALFKVNTSRPGEEQ-RLEA--VK-PM-RILSGVDTGEAVVFTGATE---------DRVALYALDGGGLRELARL----- 150 (582)
T ss_dssp EEEEEEETTSTTCCE-ECTT--SC-SB-EEEEEEECSSCEEEEEECS---------SCEEEEEEETTEEEEEEEE-----
T ss_pred eEEEEEeccCCCccc-cccC--CC-Cc-eeeeeCCCCCeEEEEecCC---------CCceEEEccCCcEEEeecC-----
Confidence 46888887 44332 3322 11 11 1223333 44555555432 2334678888877666544
Q ss_pred CCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEE
Q 006473 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (643)
Q Consensus 233 P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyv 311 (643)
+. ....+.. +++.+++++.... -...+|++|+.+..+..+... .....+.+.- +++.++
T Consensus 151 ~~--~~~~~sp-DG~~la~~~~~~~------------~~~~i~~~d~~~g~~~~l~~~-----~~~~~~~~~SpDG~~l~ 210 (582)
T 3o4h_A 151 PG--FGFVSDI-RGDLIAGLGFFGG------------GRVSLFTSNLSSGGLRVFDSG-----EGSFSSASISPGMKVTA 210 (582)
T ss_dssp SS--CEEEEEE-ETTEEEEEEEEET------------TEEEEEEEETTTCCCEEECCS-----SCEEEEEEECTTSCEEE
T ss_pred CC--ceEEECC-CCCEEEEEEEcCC------------CCeEEEEEcCCCCCceEeecC-----CCccccceECCCCCEEE
Confidence 22 2222223 4444454443321 123599999999888877432 1112233333 555555
Q ss_pred eccccccccCccccccccCCcEEEEECCCCcEE
Q 006473 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (643)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (643)
.+...+ ...|++||+.++...
T Consensus 211 ~~~~~~------------~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 211 GLETAR------------EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEECSS------------CEEEEEECTTTCCEE
T ss_pred EccCCC------------eeEEEEEcCCCCcEE
Confidence 322211 246999999988876
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=88.13 E-value=30 Score=38.81 Aligned_cols=149 Identities=12% Similarity=0.028 Sum_probs=82.4
Q ss_pred CeEEEEECCCC--cEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCC---ceEEeccCCCC
Q 006473 156 KDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF---KWQEIKPRFGS 230 (643)
Q Consensus 156 ~dv~~yD~~t~--~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~---~W~~v~~~~~~ 230 (643)
+.+|.+|+.+. .|..+.. +...........++.||+...... ....|+.+|+.+. .|+.+.+..
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~---~~~~~~~~~~~~g~~l~~~t~~~~------~~~~l~~~d~~~~~~~~~~~l~~~~-- 327 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQG---DLDADVSLVDNKGSTLYLLTNRDA------PNRRLVTVDAANPGPAHWRDLIPER-- 327 (693)
T ss_dssp CEEEEEETTSTTCCCEEEEC---SSSSCEEEEEEETTEEEEEECTTC------TTCEEEEEETTSCCGGGCEEEECCC--
T ss_pred cEEEEEECCCCCCceEEEeC---CCCceEEEEeccCCEEEEEECCCC------CCCEEEEEeCCCCCccccEEEecCC--
Confidence 68999998776 6877754 111111123345788988865421 1357899998763 488776542
Q ss_pred CCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeE
Q 006473 231 MWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRA 309 (643)
Q Consensus 231 ~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~i 309 (643)
.... .+...++.|++..-.++ ...++++++.......+.. |..........- ++..
T Consensus 328 ---~~~~--~~s~~g~~lv~~~~~~g--------------~~~l~~~d~~g~~~~~l~~----p~~~~~~~~~~~~d~~~ 384 (693)
T 3iuj_A 328 ---QQVL--TVHSGSGYLFAEYMVDA--------------TARVEQFDYEGKRVREVAL----PGLGSVSGFNGKHDDPA 384 (693)
T ss_dssp ---SSCE--EEEEETTEEEEEEEETT--------------EEEEEEECTTSCEEEEECC----SSSSEEEECCCCTTCSC
T ss_pred ---CCEE--EEEEECCEEEEEEEECC--------------eeEEEEEECCCCeeEEeec----CCCceEEeeecCCCCCE
Confidence 1112 45555777766543221 3468899988665555532 221111111111 2332
Q ss_pred EEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
++|...+. .....+|.||+.+..+..+..
T Consensus 385 l~~~~ss~----------~tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 385 LYFGFENY----------AQPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp EEEEEECS----------SSCCEEEEECTTTCCEEEEEC
T ss_pred EEEEecCC----------CCCCEEEEEECCCCeEEEEEe
Confidence 22222111 124579999999988877765
No 218
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=87.10 E-value=12 Score=40.66 Aligned_cols=96 Identities=9% Similarity=-0.036 Sum_probs=52.9
Q ss_pred EEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCce
Q 006473 103 LYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSG 182 (643)
Q Consensus 103 v~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~ 182 (643)
+.+||+.+++.+.+.... . ...+. .-+++.+++++..... ...+|++|+.++.+..+... + . .
T Consensus 134 ~~l~d~~~g~~~~l~~~~--~--~~~~~-spDG~~la~~~~~~~~-------~~~i~~~d~~~g~~~~l~~~--~-~-~- 196 (582)
T 3o4h_A 134 VALYALDGGGLRELARLP--G--FGFVS-DIRGDLIAGLGFFGGG-------RVSLFTSNLSSGGLRVFDSG--E-G-S- 196 (582)
T ss_dssp EEEEEEETTEEEEEEEES--S--CEEEE-EEETTEEEEEEEEETT-------EEEEEEEETTTCCCEEECCS--S-C-E-
T ss_pred ceEEEccCCcEEEeecCC--C--ceEEE-CCCCCEEEEEEEcCCC-------CeEEEEEcCCCCCceEeecC--C-C-c-
Confidence 346788888877775422 2 22222 2244444554432211 14599999999998877431 1 1 1
Q ss_pred eEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceE
Q 006473 183 HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (643)
Q Consensus 183 h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (643)
.....+ +++.++.+...+ ...|+++|+.+....
T Consensus 197 ~~~~~~SpDG~~l~~~~~~~-------~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 197 FSSASISPGMKVTAGLETAR-------EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEEEEECTTSCEEEEEECSS-------CEEEEEECTTTCCEE
T ss_pred cccceECCCCCEEEEccCCC-------eeEEEEEcCCCCcEE
Confidence 122333 444443332211 247999999988877
No 219
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=86.77 E-value=16 Score=40.70 Aligned_cols=124 Identities=12% Similarity=0.146 Sum_probs=66.0
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEEC-CCC--cEEEeccCCC---CCCC---ceeEEEE--ECCE----EEE
Q 006473 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL-KTN--QWEQLNLKGC---PSPR---SGHRMVL--YKHK----IIV 194 (643)
Q Consensus 130 ~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~-~t~--~W~~~~~~g~---P~~R---s~h~~~~--~~~~----lyv 194 (643)
-++.++.||+.+.. .+.++.||. .+. .|+.-..... +..+ ...+.++ .++. ||+
T Consensus 58 P~v~~g~vyv~~~~-----------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v 126 (599)
T 1w6s_A 58 PLVVDGKMYIHTSF-----------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILK 126 (599)
T ss_dssp CEEETTEEEEECST-----------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEE
T ss_pred cEEECCEEEEEeCC-----------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEE
Confidence 34569999998652 146889998 776 4886433110 0011 1123344 4666 776
Q ss_pred EeeeecCCCceeeeccEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceee
Q 006473 195 FGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHS 272 (643)
Q Consensus 195 fGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 272 (643)
... -..|+.+|..+.+ |+.-..... +......+.++.++.||+-.+.... ....
T Consensus 127 ~t~----------dg~l~AlDa~TG~~~W~~~~~~~~---~~~~~~ssP~v~~g~V~vg~~g~e~-----------g~~g 182 (599)
T 1w6s_A 127 TQL----------DGNVAALNAETGETVWKVENSDIK---VGSTLTIAPYVVKDKVIIGSSGAEL-----------GVRG 182 (599)
T ss_dssp ECT----------TSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEEETTEEEECCBCGGG-----------TCCC
T ss_pred EcC----------CCEEEEEECCCCCEEEeecCCCCC---ccceeecCCEEECCEEEEEeccccc-----------CCCC
Confidence 422 2468999988765 875432100 0001112234557877654321100 1234
Q ss_pred eEEEEeCCCC--eeEEec
Q 006473 273 DLWSLDPRTW--EWSKVK 288 (643)
Q Consensus 273 dv~~yd~~t~--~W~~l~ 288 (643)
.++.||+.+. .|..-.
T Consensus 183 ~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 183 YLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEEEETTTCCEEEEEES
T ss_pred eEEEEECCCCcEEEEEcC
Confidence 5889998764 587653
No 220
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=86.58 E-value=13 Score=35.69 Aligned_cols=104 Identities=13% Similarity=0.278 Sum_probs=54.8
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC-cEE--EecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceec
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWK--VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHY 155 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~-~W~--~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~ 155 (643)
++++|+|=|. .+|+++.... ... .|...-.-.|..--++... ++++|+|-|
T Consensus 40 ~g~~~fFkg~-----------~~Wr~~~~~~~~~~P~~I~~~wp~lp~~IDAA~~~~~~~k~yfFkG------------- 95 (218)
T 1gen_A 40 RGEIFFFKDR-----------FIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAG------------- 95 (218)
T ss_dssp TTEEEEEETT-----------EEEEESSTTSCCEEEEEGGGTCTTSCSCCSEEEEETTTTEEEEEET-------------
T ss_pred CCcEEEEECC-----------EEEEEeCCCCccCCCEEHHHhcCCCCCCccEEEEECCCCEEEEEeC-------------
Confidence 6889999883 4566654432 111 2222110112222233333 689999987
Q ss_pred CeEEEEECCCCc---EEEeccCCCCCCC-ceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 156 KDFWMLDLKTNQ---WEQLNLKGCPSPR-SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 156 ~dv~~yD~~t~~---W~~~~~~g~P~~R-s~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
+.+|+|+..+.. =..+...+.|... .-.++..+ ++++|+|-| +..|+||..+.
T Consensus 96 ~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-----------~~ywr~d~~~~ 154 (218)
T 1gen_A 96 NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-----------DKFWRYNEVKK 154 (218)
T ss_dssp TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-----------TEEEEEETTTT
T ss_pred CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-----------CEEEEEECccc
Confidence 468999853110 0112111334321 22344443 689999977 45889998765
No 221
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=86.19 E-value=4.6 Score=38.10 Aligned_cols=103 Identities=13% Similarity=0.273 Sum_probs=59.9
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcE-EEecCCCCCCC--ceeeEEEEECCEEEEEeCccCCCCCCcceecCe
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW-KVISSPNSPPP--RSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W-~~l~s~~~P~p--Rs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
++++|+|-| +.+|+|+..+..- +.|.....|.. ....++...++++|+|-| +.
T Consensus 64 ~~~~yfFkG-----------~~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-------------~~ 119 (195)
T 1itv_A 64 SKKLFFFSG-----------RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-------------RR 119 (195)
T ss_dssp TCCEEEEET-----------TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-------------TE
T ss_pred CCeEEEEeC-----------CEEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC-------------CE
Confidence 578999988 3567777542111 12222223332 233333323689999987 46
Q ss_pred EEEEECCCCcEEE-----ec--cCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 158 FWMLDLKTNQWEQ-----LN--LKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 158 v~~yD~~t~~W~~-----~~--~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
.|+||..+++-.. +. -.|+| ..-.++..+++.+|+|-| +..|+||..+..
T Consensus 120 ywr~d~~~~~~~~gyPr~i~~~w~Gvp--~~idaa~~~~g~~Yffkg-----------~~y~~~~~~~~~ 176 (195)
T 1itv_A 120 LWRFDVKAQMVDPRSASEVDRMFPGVP--LDTHDVFQFREKAYFCQD-----------RFYWRVSSRSEL 176 (195)
T ss_dssp EEEEETTTTEECGGGCEEHHHHSTTSC--SSCSEEEEETTEEEEEET-----------TEEEEEECCTTC
T ss_pred EEEEeCCcccccCCCccChhhcCCCCC--CCCCEEEEeCCeEEEEeC-----------CEEEEEECCccE
Confidence 8999987754211 11 01223 233456667899999977 357888887654
No 222
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=86.02 E-value=8.7 Score=40.13 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=32.9
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCc-EEEeccCCCCCCCceeEEEEE---CCEEEEEeeeecCCCceeeec
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYN 209 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rs~h~~~~~---~~~lyvfGG~~~~~~~~~~~~ 209 (643)
++.+++.|+.. ..+.+||+.+.. ...+.. .......-.++.+ +.++++.|+.+ .
T Consensus 243 ~~~~l~s~~~d-----------g~i~i~d~~~~~~~~~~~~--~~~~~~~v~~i~~~p~~~~~l~tg~~d---------g 300 (430)
T 2xyi_A 243 HESLFGSVADD-----------QKLMIWDTRNNNTSKPSHT--VDAHTAEVNCLSFNPYSEFILATGSAD---------K 300 (430)
T ss_dssp CTTEEEEEETT-----------SEEEEEETTCSCSSSCSEE--EECCSSCEEEEEECSSCTTEEEEEETT---------S
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCCCCcceeE--eecCCCCeEEEEeCCCCCCEEEEEeCC---------C
Confidence 45677776642 468889987652 100000 0011112223333 33578888753 4
Q ss_pred cEEEEEcCC
Q 006473 210 DLYVFDLDQ 218 (643)
Q Consensus 210 dv~~yD~~t 218 (643)
.|.+||+.+
T Consensus 301 ~v~vwd~~~ 309 (430)
T 2xyi_A 301 TVALWDLRN 309 (430)
T ss_dssp EEEEEETTC
T ss_pred eEEEEeCCC
Confidence 588888875
No 223
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=85.93 E-value=29 Score=34.33 Aligned_cols=195 Identities=12% Similarity=0.090 Sum_probs=96.2
Q ss_pred eeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCC
Q 006473 99 VYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (643)
Q Consensus 99 ~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P 177 (643)
....||++++.+++-+.+. ..+..+.. +++.++|....... ....+|++|+.+++...+.. .+
T Consensus 41 ~~~~l~~~d~~~~~~~~l~--------~~~~~~~SpDg~~la~~~~~~~~------~~~~l~~~~~~~g~~~~l~~--~~ 104 (347)
T 2gop_A 41 YENTIVIENLKNNARRFIE--------NATMPRISPDGKKIAFMRANEEK------KVSEIWVADLETLSSKKILE--AK 104 (347)
T ss_dssp EEEEEEEEETTTCCEEEEE--------SCEEEEECTTSSEEEEEEEETTT------TEEEEEEEETTTTEEEEEEE--ES
T ss_pred ccceEEEEeCCCCceEEcc--------cCCCeEECCCCCEEEEEEeccCC------CcceEEEEECCCCceEEEEc--CC
Confidence 4678999999988776661 11122222 34333333321110 12469999999888777654 22
Q ss_pred CCCceeEEEEE--CCEEEEEeeeecC----------------CC--ceeeeccEEEEEcCCCce-EEeccCCCCCCCCCc
Q 006473 178 SPRSGHRMVLY--KHKIIVFGGFYDT----------------LR--EVRYYNDLYVFDLDQFKW-QEIKPRFGSMWPSPR 236 (643)
Q Consensus 178 ~~Rs~h~~~~~--~~~lyvfGG~~~~----------------~~--~~~~~~dv~~yD~~t~~W-~~v~~~~~~~~P~~R 236 (643)
. .....+ +++.++|...... +. .......|+++|+.+... ..+.. +
T Consensus 105 ~----~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~------~--- 171 (347)
T 2gop_A 105 N----IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK------P--- 171 (347)
T ss_dssp E----EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE------E---
T ss_pred C----ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC------C---
Confidence 1 223334 4544444432100 00 000135799999988876 55532 1
Q ss_pred cceeEEEeCCEEEEEcCCCCCCCCccCCCCCCce-eeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccc
Q 006473 237 SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGII-HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (643)
Q Consensus 237 ~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~-~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~ 315 (643)
....++...+.|++.+..... ..... ...+|.+| +..+..+... .......-+++.++|++.
T Consensus 172 ~~~~~~~spdg~~~~~~~~~~--------~~~~~~~~~l~~~d--~~~~~~l~~~-------~~~~~~spdg~~l~~~~~ 234 (347)
T 2gop_A 172 RFSSGIWHRDKIVVNVPHREI--------IPQYFKFWDIYIWE--DGKEEKMFEK-------VSFYAVDSDGERILLYGK 234 (347)
T ss_dssp TTCEEEEETTEEEEEEECCCS--------SCCSSCCEEEEEEE--TTEEEEEEEE-------ESEEEEEECSSCEEEEEC
T ss_pred CcccccCCCCeEEEEEecccc--------cccccccccEEEeC--CCceEEeccC-------cceeeECCCCCEEEEEEc
Confidence 122333344445555533221 00002 45789999 6677766431 111122446665555553
Q ss_pred cccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 316 VDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 316 ~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
.... .......||++| +..+..+.
T Consensus 235 ~~~~------~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 235 PEKK------YMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp CSSS------CCCSSCEEEEEC--SSCEEESS
T ss_pred cccC------CccccceEEEEC--CCceEecc
Confidence 2210 011245789998 55655543
No 224
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=85.82 E-value=35 Score=38.03 Aligned_cols=52 Identities=15% Similarity=0.072 Sum_probs=28.2
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
..+.+||+.+..-...-. .... .-.++.+ ++.+++.||.+ ..|.+||+.+.+
T Consensus 541 ~~v~vwd~~~~~~~~~~~--~h~~--~v~~v~~spdg~~l~sg~~D---------g~i~iwd~~~~~ 594 (694)
T 3dm0_A 541 KTVKVWNLSNCKLRSTLA--GHTG--YVSTVAVSPDGSLCASGGKD---------GVVLLWDLAEGK 594 (694)
T ss_dssp SCEEEEETTTCCEEEEEC--CCSS--CEEEEEECTTSSEEEEEETT---------SBCEEEETTTTE
T ss_pred CeEEEEECCCCcEEEEEc--CCCC--CEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCc
Confidence 357788887765433211 1111 1122223 56677777753 357788887764
No 225
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=85.74 E-value=9.8 Score=37.83 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=20.3
Q ss_pred CCeEEEeccccccccCccccccccCCcEEEEECC-CCcEEEeEec
Q 006473 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD-NHRWYPLELR 349 (643)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~-t~~W~~l~~~ 349 (643)
++.+++.||.+ ..|.+|++. ...|..+...
T Consensus 273 ~g~~las~~~D--------------~~v~lw~~~~~g~~~~~~~~ 303 (316)
T 3bg1_A 273 TANILAVSGGD--------------NKVTLWKESVDGQWVCISDV 303 (316)
T ss_dssp TTCCEEEEESS--------------SCEEEEEECTTSCEEEEEEC
T ss_pred CCCEEEEEcCC--------------CeEEEEEECCCCcEEEeeec
Confidence 56777777753 347777765 4689888764
No 226
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=85.61 E-value=9.1 Score=39.85 Aligned_cols=152 Identities=14% Similarity=0.225 Sum_probs=77.5
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcE--EEecC--CCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCccee
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W--~~l~s--~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~ 154 (643)
++++|+|=|. .+|+++.....- ..+.. +.+| ..--++... ++.+|+|-|
T Consensus 190 ~g~~~fFkg~-----------~~Wr~~~~~~~~~p~~I~~~wpgLP--~~iDAa~~~~~~g~~~fFkg------------ 244 (365)
T 3ba0_A 190 GNKIFFFKDR-----------FFWLKVSERPKTSVNLISSLWPTLP--SGIEAAYEIEARNQVFLFKD------------ 244 (365)
T ss_dssp TTEEEEEETT-----------EEEECCSSCCCCCEEEHHHHCSSCC--SSCCEEEEEGGGTEEEEEET------------
T ss_pred CCeEEEEeCC-----------EEEEEcCCCccCCccchhhhccCCC--CCccEEEEecCCCEEEEEeC------------
Confidence 6888888773 456665443211 11111 1223 222233333 789999987
Q ss_pred cCeEEEEECCCCc--E-EEeccCCCCCCC-ceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC
Q 006473 155 YKDFWMLDLKTNQ--W-EQLNLKGCPSPR-SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 155 ~~dv~~yD~~t~~--W-~~~~~~g~P~~R-s~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
+.+|+|+..... + ..+...|+|..- .--++..+ ++++|+|-| +..|+||..+.+-..--+.+
T Consensus 245 -~~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG-----------~~yw~yd~~~~~v~~gyPk~ 312 (365)
T 3ba0_A 245 -DKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD-----------NQYWRYDERRQMMDPGYPKL 312 (365)
T ss_dssp -TEEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET-----------TEEEEEETTTTEECSSCCCC
T ss_pred -CEEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC-----------CEEEEEeCCcceecCCCCcc
Confidence 357888654221 1 123322344421 22234444 579999977 46799997654311100000
Q ss_pred C--CCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 006473 229 G--SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 229 ~--~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (643)
- .-+..+..--+++.. ++.+|+|=|. ..|+||..+.+-..+
T Consensus 313 I~~~f~g~p~~iDaA~~~~~g~~YfFkg~------------------~ywr~d~~~~~v~~~ 356 (365)
T 3ba0_A 313 ITKNFQGIGPKIDAVFYSKNKYYYFFQGS------------------NQFEYDFLLQRITKT 356 (365)
T ss_dssp HHHHSTTCCSSCSEEEEETTTEEEEEETT------------------EEEEEETTTTEEEEE
T ss_pred hhhcCCCCCCccceeeEecCCcEEEEeCC------------------EEEEEECCccEEecc
Confidence 0 000111112233334 8889998663 388999887776553
No 227
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=85.59 E-value=21 Score=36.37 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=70.4
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCcee-EEEEE---CCEEEEEeeeecCCCceeeeccEEEEEcCCC--ceEEeccCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGH-RMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFG 229 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h-~~~~~---~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~ 229 (643)
..+.+||+.++.-...-....+...... ..+.+ ++.+++.|+.+ ..+.+||+... .-..+...
T Consensus 180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D---------~~v~~wd~~~~~~~~~~~~~h-- 248 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD---------TTVRLWDLRITSRAVRTYHGH-- 248 (380)
T ss_dssp SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT---------SCEEEEETTTTCCCCEEECCC--
T ss_pred CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC---------CeEEEEECCCCCcceEEECCc--
Confidence 3577888888765443221112211111 12222 56777778753 35778887532 11111111
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCC--CCCc-eeeEEEEE
Q 006473 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP--PGPR-AGFSMCVH 305 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~--P~~R-~g~s~~~~ 305 (643)
..+ -.+++.. ++..++.|+.++. +.+||+.+..-...-..... .... .-.++++.
T Consensus 249 ---~~~--v~~v~~~p~~~~l~s~s~D~~----------------i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 249 ---EGD--INSVKFFPDGQRFGTGSDDGT----------------CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS 307 (380)
T ss_dssp ---SSC--CCEEEECTTSSEEEEECSSSC----------------EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred ---CCC--eEEEEEecCCCeEEEEcCCCe----------------EEEEECCCCcEEEEecccccccccccCceEEEEEC
Confidence 011 1122222 6678888888765 77888877654332211000 0001 11233433
Q ss_pred -CCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
++++++.|+.+ ..|++||+.+..
T Consensus 308 ~~g~~l~~g~~d--------------g~i~vwd~~~~~ 331 (380)
T 3iz6_a 308 ISGRLLFAGYSN--------------GDCYVWDTLLAE 331 (380)
T ss_dssp SSSSEEEEECTT--------------SCEEEEETTTCC
T ss_pred CCCCEEEEEECC--------------CCEEEEECCCCc
Confidence 57777777643 358999987654
No 228
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=85.52 E-value=26 Score=35.65 Aligned_cols=101 Identities=11% Similarity=-0.002 Sum_probs=51.2
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv 211 (643)
++..++.++..... ...++.++.....+..............-.++.+ ++++++.|+.+ ..|
T Consensus 230 dg~~l~~~s~d~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D---------~~V 293 (365)
T 4h5i_A 230 DDTVLIAASLKKGK-------GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND---------NSI 293 (365)
T ss_dssp TTEEEEEEEESSSC-------CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT---------SCE
T ss_pred CCCEEEEEecCCcc-------eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC---------CEE
Confidence 67777777654321 1246677776665543322111111111222333 67777888753 458
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCccc--eeEEEe-CCEEEEEcCCCCC
Q 006473 212 YVFDLDQFKWQEIKPRFGSMWPSPRSG--FQFFVY-QDEVFLYGGYSKE 257 (643)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R~~--~s~~~~-~~~iyv~GG~~~~ 257 (643)
.+||+.+.+ .+... ..+..+ .+++.. ++.+++.|+.++.
T Consensus 294 ~iwd~~~~~--~~~~~-----~~gH~~~V~~v~fSpdg~~laS~S~D~t 335 (365)
T 4h5i_A 294 ALVKLKDLS--MSKIF-----KQAHSFAITEVTISPDSTYVASVSAANT 335 (365)
T ss_dssp EEEETTTTE--EEEEE-----TTSSSSCEEEEEECTTSCEEEEEETTSE
T ss_pred EEEECCCCc--EEEEe-----cCcccCCEEEEEECCCCCEEEEEeCCCe
Confidence 889988764 22221 111111 122222 7778888887654
No 229
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=85.19 E-value=20 Score=33.65 Aligned_cols=101 Identities=18% Similarity=0.301 Sum_probs=54.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc---EEEecC--CCCCCCceeeEEEE-ECCEEEEEeCccCCCCCCccee
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE---WKVISS--PNSPPPRSAHQAVS-WKNYLYIFGGEFTSPNQERFHH 154 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~---W~~l~s--~~~P~pRs~ha~~~-~~~~iyvfGG~~~~~~~~~~~~ 154 (643)
++++|+|-| +.+|+++...-. =+.|.. +.+|. .--+++. .++++|+|-|
T Consensus 15 ~g~~~fFkg-----------~~~w~~~~~~~~~gyP~~I~~~w~glP~--~iDAa~~~~~g~~yfFkg------------ 69 (196)
T 3c7x_A 15 RGEMFVFKE-----------RWFWRVRNNQVMDGYPMPIGQFWRGLPA--SINTAYERKDGKFVFFKG------------ 69 (196)
T ss_dssp TTEEEEEET-----------TEEEEEETTEECTTCSEEHHHHSTTCCS--SCCEEEECTTSCEEEEET------------
T ss_pred CCEEEEEEC-----------CEEEEEECCccCCCCceEhhHhccCCCC--CccEEEEeCCCcEEEecC------------
Confidence 689999998 367777543100 011211 12333 2222222 3688999987
Q ss_pred cCeEEEEECCCCcE---EEeccC--CCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 155 YKDFWMLDLKTNQW---EQLNLK--GCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 155 ~~dv~~yD~~t~~W---~~~~~~--g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
+.+|+|+..+... ..+... ++|... --++..+ ++++|+|-| +..|+||..+.
T Consensus 70 -~~yw~~~~~~~~~gyPk~I~~~~~glP~~~-IDAA~~~~~~g~~yfFkG-----------~~yw~yd~~~~ 128 (196)
T 3c7x_A 70 -DKHWVFDEASLEPGYPKHIKELGRGLPTDK-IDAALFWMPNGKTYFFRG-----------NKYYRFNEELR 128 (196)
T ss_dssp -TEEEEEETTEECTTCSEEGGGTCBSCCSSC-CSEEEEETTTTEEEEEET-----------TEEEEEETTTT
T ss_pred -CEEEEEeCCcccCCCCeEhhhcCCCCCCCc-ccEEEEEccCCEEEEEEC-----------CEEEEEeCCcc
Confidence 4579998642110 122221 134222 2233434 589999977 35789998764
No 230
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=85.15 E-value=37 Score=35.39 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=12.5
Q ss_pred eeeEEEEE-CCeEEEecc
Q 006473 298 AGFSMCVH-KKRALLFGG 314 (643)
Q Consensus 298 ~g~s~~~~-~~~iyvfGG 314 (643)
..|++++. ++.+|.+|-
T Consensus 286 ~~hs~alt~~G~v~~wG~ 303 (406)
T 4d9s_A 286 WRHTMALTSDGKLYGWGW 303 (406)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred CCEEEEEcCCCeEEEeeC
Confidence 35777776 678999984
No 231
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=84.98 E-value=31 Score=33.90 Aligned_cols=105 Identities=12% Similarity=0.074 Sum_probs=55.1
Q ss_pred CEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 82 ~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
+.+++.|+. + +.+.+||+.+.......... .....-.+++.. ++.+++.|+.. ..+.+
T Consensus 54 g~~l~~~~~--d-------g~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d-----------g~v~i 112 (368)
T 3mmy_A 54 GNFLIAGSW--A-------NDVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGSKVFTASCD-----------KTAKM 112 (368)
T ss_dssp SEEEEEEET--T-------SEEEEEEECTTSCEEEEEEE-ECSSCEEEEEECTTSSEEEEEETT-----------SEEEE
T ss_pred ceEEEEECC--C-------CcEEEEEcCCCCceeEEEec-cccCCEEEEEECcCCCEEEEEcCC-----------CcEEE
Confidence 478888873 2 36788888763222111000 011111222222 45566666542 46888
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEE---ECCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVL---YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~---~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
||+.+.....+.. ... .-.+++. .++.+++.|+.+ ..+.+||+.+.+
T Consensus 113 wd~~~~~~~~~~~--~~~--~v~~~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~ 162 (368)
T 3mmy_A 113 WDLSSNQAIQIAQ--HDA--PVKTIHWIKAPNYSCVMTGSWD---------KTLKFWDTRSSN 162 (368)
T ss_dssp EETTTTEEEEEEE--CSS--CEEEEEEEECSSCEEEEEEETT---------SEEEEECSSCSS
T ss_pred EEcCCCCceeecc--ccC--ceEEEEEEeCCCCCEEEEccCC---------CcEEEEECCCCc
Confidence 9998887665432 111 1122332 256777777742 458888887654
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=84.29 E-value=32 Score=33.56 Aligned_cols=90 Identities=12% Similarity=0.286 Sum_probs=44.1
Q ss_pred ccEEEEECC-CCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCC-cEEEeccCCCC
Q 006473 101 GDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKGCP 177 (643)
Q Consensus 101 ndv~~yd~~-~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~-~W~~~~~~g~P 177 (643)
+.+++||+. ...|...... + ...+.+.. ++.||+.. . -..+++||+... .|.....
T Consensus 117 ~~l~~~d~~g~~~~~~~~~~----~-~~~~~~~~~~g~l~vgt-~-----------~~~l~~~d~~g~~~~~~~~~---- 175 (330)
T 3hxj_A 117 GHLYAINTDGTEKWRFKTKK----A-IYATPIVSEDGTIYVGS-N-----------DNYLYAINPDGTEKWRFKTN---- 175 (330)
T ss_dssp SEEEEECTTSCEEEEEECSS----C-CCSCCEECTTSCEEEEC-T-----------TSEEEEECTTSCEEEEEECS----
T ss_pred CEEEEEcCCCCEEEEEcCCC----c-eeeeeEEcCCCEEEEEc-C-----------CCEEEEECCCCCEeEEEecC----
Confidence 368889887 3356654221 1 12222333 56676632 1 145888888722 3554321
Q ss_pred CCCceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCC-CceEEe
Q 006473 178 SPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEI 224 (643)
Q Consensus 178 ~~Rs~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t-~~W~~v 224 (643)
... ..+++. -++.||+-. ..+++||... ..|...
T Consensus 176 ~~~-~~~~~~d~~g~l~v~t------------~~l~~~d~~g~~~~~~~ 211 (330)
T 3hxj_A 176 DAI-TSAASIGKDGTIYFGS------------DKVYAINPDGTEKWNFY 211 (330)
T ss_dssp SCC-CSCCEECTTCCEEEES------------SSEEEECTTSCEEEEEC
T ss_pred CCc-eeeeEEcCCCEEEEEe------------CEEEEECCCCcEEEEEc
Confidence 111 122333 256676642 3477888432 235543
No 233
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=84.19 E-value=19 Score=37.39 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=12.8
Q ss_pred ceEEEEeccCCCEEEEEcc
Q 006473 71 NCSLNINPLKETELILYGG 89 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG 89 (643)
.|++++.. +++||.+|-
T Consensus 117 ~h~~al~~--~G~v~~wG~ 133 (389)
T 3kci_A 117 KHCLALSS--EGEVYSWGE 133 (389)
T ss_dssp SEEEEEET--TSCEEEEEC
T ss_pred CeEEEEcC--CCCEEEEeC
Confidence 57766664 789999995
No 234
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=83.67 E-value=14 Score=39.70 Aligned_cols=148 Identities=16% Similarity=0.290 Sum_probs=77.5
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEE--ecC--CCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCccee
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV--ISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~--l~s--~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~ 154 (643)
++++|+|=|. .+|+++.....+.. |.. +.+| ..--++... ++.+|+|=|
T Consensus 272 ~ge~y~Fkg~-----------~~wr~~~~~~~~~p~~I~~~Wp~LP--~~iDAa~~~~~~g~~~fFKg------------ 326 (450)
T 1su3_A 272 RGEVMFFKDR-----------FYMRTNPFYPEVELNFISVFWPQLP--NGLEAAYEFADRDEVRFFKG------------ 326 (450)
T ss_dssp TTEEEEEETT-----------EEEECCTTSSSCEEEEGGGTCTTSC--SSCCEEEEEGGGTEEEEEET------------
T ss_pred CCeEEEEeCC-----------EEEEEcCCCCcccceehhHhccCCC--CCeeEEEEEcCCCeEEEEeC------------
Confidence 6899999884 45666655443332 211 1222 222233333 689999987
Q ss_pred cCeEEEEECCCC--cE-EEec-cCCCCCCCcee-EEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCce-----E
Q 006473 155 YKDFWMLDLKTN--QW-EQLN-LKGCPSPRSGH-RMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-----Q 222 (643)
Q Consensus 155 ~~dv~~yD~~t~--~W-~~~~-~~g~P~~Rs~h-~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W-----~ 222 (643)
+.+|+|+..+- .+ ..+. ..+.|..-.+- ++..+ ++++|+|-| +..|+||..+.+- .
T Consensus 327 -~~~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-----------~~yw~yd~~~~~~~~gYPk 394 (450)
T 1su3_A 327 -NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-----------NKYWRYDEYKRSMDPGYPK 394 (450)
T ss_dssp -TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-----------TEEEEEETTTTEECSSCSE
T ss_pred -CEEEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-----------CEEEEEeCCCccccCCCCc
Confidence 45788875321 01 1121 11233321222 33344 589999977 4689998764321 1
Q ss_pred EeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 223 ~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
.|.....+. | .... +++..++.+|+|-|. ..|+||..+.+-..
T Consensus 395 ~I~~~fpgi-p-~~iD-AA~~~~g~~YFFkg~------------------~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 395 MIAHDFPGI-G-HKVD-AVFMKDGFFYFFHGT------------------RQYKFDPKTKRILT 437 (450)
T ss_dssp EHHHHSTTS-C-SCCS-EEEEETTEEEEEETT------------------EEEEEETTTTEEEE
T ss_pred chhhcCCCC-C-CCcc-EEEEcCCeEEEEeCC------------------EEEEEECCcceEec
Confidence 111110111 2 1222 333458899998764 37899987766544
No 235
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=83.53 E-value=47 Score=34.81 Aligned_cols=217 Identities=13% Similarity=0.179 Sum_probs=110.7
Q ss_pred CCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECC----CCcE-EEeccCCCCCCCceeE
Q 006473 110 KQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK----TNQW-EQLNLKGCPSPRSGHR 184 (643)
Q Consensus 110 ~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~----t~~W-~~~~~~g~P~~Rs~h~ 184 (643)
.+.|+.-.-+..|..-.-|+.|.+++.-|++|=.+..... .-+ .+..|... ...- +.++.. ....-+-.+
T Consensus 269 ~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~P---Re~-G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPC 343 (670)
T 3ju4_A 269 KSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAP---REV-GLFYFPDAFNSPSNYVRRQIPSE-YEPDASEPC 343 (670)
T ss_dssp TSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSS---CEE-EEEEETTTTTCTTCCEEEECCGG-GCTTEEEEE
T ss_pred cCCceecccccccceeeeeeeeEecCCceEEEeccCCCCc---cee-eEEEecccccCCcceeeeechhh-hccccccch
Confidence 3457655555566677789999998888888743332221 001 12222111 1111 222221 122334455
Q ss_pred EEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCC---CCCc
Q 006473 185 MVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE---VSTD 261 (643)
Q Consensus 185 ~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~---~~~~ 261 (643)
.-++++.||+.--.... +..-..|.+-+..-..|..+..+. .......-++..++.|||||--... ....
T Consensus 344 vkyYdgvLyLtTRgt~~---~~~GS~L~rs~d~Gq~w~slrfp~----nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~ 416 (670)
T 3ju4_A 344 IKYYDGVLYLITRGTRG---DRLGSSLHRSRDIGQTWESLRFPH----NVHHTTLPFAKVGDDLIMFGSERAENEWEAGA 416 (670)
T ss_dssp EEEETTEEEEEEEESCT---TSCCCEEEEESSTTSSCEEEECTT----CCCSSCCCEEEETTEEEEEEECSSTTCSSTTC
T ss_pred hhhhCCEEEEEecCcCC---CCCcceeeeecccCCchhheeccc----cccccCCCcceeCCEEEEEeccccccccccCC
Confidence 66779999998643222 223456777777778899987651 2333444456779999999853221 0000
Q ss_pred cCCCCCCceeee-EEEEe-----CCCCeeEEeccC---CCCCCCceeeE-EEEECCeE-EEeccccccc---cCcc----
Q 006473 262 KNQSEKGIIHSD-LWSLD-----PRTWEWSKVKKI---GMPPGPRAGFS-MCVHKKRA-LLFGGVVDME---MKGD---- 323 (643)
Q Consensus 262 ~~~~~~~~~~~d-v~~yd-----~~t~~W~~l~~~---g~~P~~R~g~s-~~~~~~~i-yvfGG~~~~~---~~~~---- 323 (643)
...+-.+..-.. +.+.+ ....+|..+... |..-..-.|.+ +|+.++.| |||||.+... ..++
T Consensus 417 pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~np~s~gdN~~k~ 496 (670)
T 3ju4_A 417 PDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKD 496 (670)
T ss_dssp CCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSCCCCTTTTTTTCC
T ss_pred CcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccCCccccccccccC
Confidence 111112221111 12233 345578777542 33344444544 45556765 5789864321 1111
Q ss_pred -ccccccCCcEEEEEC
Q 006473 324 -VIMSLFLNELYGFQL 338 (643)
Q Consensus 324 -~~~~~~~ndl~~yd~ 338 (643)
.-......+||+|-+
T Consensus 497 ~~~~~Ghp~dlY~~ri 512 (670)
T 3ju4_A 497 PFKSDGHPSDLYCYKM 512 (670)
T ss_dssp TTSTTCCCCEEEEEEE
T ss_pred ccccCCCCcceEEEEE
Confidence 112233457888865
No 236
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=83.34 E-value=37 Score=33.46 Aligned_cols=95 Identities=7% Similarity=0.094 Sum_probs=51.3
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCc---EEEecc--CC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQLNL--KG 175 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~---W~~~~~--~g 175 (643)
.+++|++.+.+...+... |..+.....+.. ++.+|+.--. ...+|++|+.+.. |..-.. ..
T Consensus 96 ~v~~~d~~~g~~~~~~~~--~~~~~~~g~~~~~~~~~~v~d~~-----------~g~i~~~d~~~~~~~v~~~~~~~~~~ 162 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTL--PDAIFLNGITPLSDTQYLTADSY-----------RGAIWLIDVVQPSGSIWLEHPMLARS 162 (306)
T ss_dssp EEEEEECTTSCEEEEEEC--TTCSCEEEEEESSSSEEEEEETT-----------TTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred eEEEEcCCCCeEEEEEeC--CCccccCcccccCCCcEEEEECC-----------CCeEEEEeCCCCcEeEEEECCccccc
Confidence 488899888887766432 334444444444 5667775321 2479999987642 211110 00
Q ss_pred CCCC--CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 176 CPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 176 ~P~~--Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
.+.. .....+..-++.||+.-- ..+.|++|++..
T Consensus 163 ~~~~~~~~pngis~dg~~lyv~d~---------~~~~I~~~~~~~ 198 (306)
T 2p4o_A 163 NSESVFPAANGLKRFGNFLYVSNT---------EKMLLLRIPVDS 198 (306)
T ss_dssp STTCCSCSEEEEEEETTEEEEEET---------TTTEEEEEEBCT
T ss_pred cccCCCCcCCCcCcCCCEEEEEeC---------CCCEEEEEEeCC
Confidence 1111 122233333568887532 246799999864
No 237
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=83.22 E-value=0.38 Score=50.22 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=25.2
Q ss_pred ccEEEEECCCC--cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEE
Q 006473 101 GDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQ 170 (643)
Q Consensus 101 ndv~~yd~~~~--~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~ 170 (643)
+.|+++|..++ .|+.-. . +. . .+.+..++.+|+.|+.. ..++.||..++ .|..
T Consensus 19 g~v~a~d~~tG~~~W~~~~-~--~~-~--s~p~~~~g~~~v~~s~d-----------g~l~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 19 GSLHAVSKRTGSIKWTLKE-D--PV-L--QVPTHVEEPAFLPDPND-----------GSLYTLGSKNNEGLTKL 75 (369)
T ss_dssp SEEEEEETTTCCEEEEEEC-C--CS-C--CCC-----CCEEECTTT-----------CCEEEC-----CCSEEC
T ss_pred CEEEEEECCCCCEEEEecC-C--Cc-e--ecceEcCCCEEEEeCCC-----------CEEEEEECCCCceeeee
Confidence 36899998876 477543 1 11 1 12223456677776431 35888998665 4653
No 238
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=82.96 E-value=39 Score=33.44 Aligned_cols=215 Identities=8% Similarity=-0.078 Sum_probs=104.4
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCC--CCCCceeeEEEEE--CCEEEEEeCccCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN--SPPPRSAHQAVSW--KNYLYIFGGEFTSP 147 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~--~P~pRs~ha~~~~--~~~iyvfGG~~~~~ 147 (643)
+.+++.+. ++.|||.... +.+++||+.++..+.+.... .+. ..-..+++. ++.|||.-......
T Consensus 83 ~gi~~~~~-~g~l~v~d~~----------~~i~~~d~~~g~~~~~~~~~~~~~~-~~p~~i~~d~~~G~l~v~d~~~~~~ 150 (322)
T 2fp8_A 83 YDISYNLQ-NNQLYIVDCY----------YHLSVVGSEGGHATQLATSVDGVPF-KWLYAVTVDQRTGIVYFTDVSTLYD 150 (322)
T ss_dssp EEEEEETT-TTEEEEEETT----------TEEEEECTTCEECEEEESEETTEEC-SCEEEEEECTTTCCEEEEESCSSCC
T ss_pred ceEEEcCC-CCcEEEEECC----------CCEEEEeCCCCEEEEecccCCCCcc-cccceEEEecCCCEEEEECCccccc
Confidence 44555421 4678876331 23788898877665553211 111 122333333 46888864321000
Q ss_pred CCCc------ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-C-CEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 148 NQER------FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 148 ~~~~------~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~-~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
.... ......+++||+.+.....+... +.. -..+++- + +.||+.-.. .+.|++|++...
T Consensus 151 ~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~---p~gia~~~dg~~lyv~d~~---------~~~I~~~~~~~~ 217 (322)
T 2fp8_A 151 DRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHV---PGGAEVSADSSFVLVAEFL---------SHQIVKYWLEGP 217 (322)
T ss_dssp TTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESC---CCEEEECTTSSEEEEEEGG---------GTEEEEEESSST
T ss_pred ccccceehcccCCCceEEEEeCCCCEEEEeccC-Ccc---CcceEECCCCCEEEEEeCC---------CCeEEEEECCCC
Confidence 0000 00125699999988876654321 111 1233443 2 467876321 357899998752
Q ss_pred ---ceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCC
Q 006473 220 ---KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG 295 (643)
Q Consensus 220 ---~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 295 (643)
.+..+... +.| ..+++. ++.|||......... ........+++||+....-..+....-.+
T Consensus 218 ~~~~~~~~~~~-----~gP---~gi~~d~~G~l~va~~~~~~~~------~~~~~~~~v~~~d~~G~~~~~~~~~~g~~- 282 (322)
T 2fp8_A 218 KKGTAEVLVKI-----PNP---GNIKRNADGHFWVSSSEELDGN------MHGRVDPKGIKFDEFGNILEVIPLPPPFA- 282 (322)
T ss_dssp TTTCEEEEEEC-----SSE---EEEEECTTSCEEEEEEEETTSS------TTSCEEEEEEEECTTSCEEEEEECCTTTT-
T ss_pred cCCccceEEeC-----CCC---CCeEECCCCCEEEEecCccccc------ccCCCccEEEEECCCCCEEEEEECCCCCc-
Confidence 33333322 211 223333 567887653311100 00112456899998765555554321111
Q ss_pred CceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 296 PRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 296 ~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
.....+++..+++|||.+.. .+.|.+|++..
T Consensus 283 ~~~~~~~~~~~g~L~v~~~~--------------~~~i~~~~~~~ 313 (322)
T 2fp8_A 283 GEHFEQIQEHDGLLYIGTLF--------------HGSVGILVYDK 313 (322)
T ss_dssp TSCCCEEEEETTEEEEECSS--------------CSEEEEEEC--
T ss_pred cccceEEEEeCCEEEEeecC--------------CCceEEEeccc
Confidence 12223445568888887532 35588888764
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=82.58 E-value=18 Score=35.48 Aligned_cols=90 Identities=17% Similarity=0.307 Sum_probs=44.2
Q ss_pred EEEEECCCC-cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECC-CCcEEEeccCCCCCCC
Q 006473 103 LYRYDVEKQ-EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK-TNQWEQLNLKGCPSPR 180 (643)
Q Consensus 103 v~~yd~~~~-~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~-t~~W~~~~~~g~P~~R 180 (643)
+++||+... .|..... ... ....+..++.||+... ...+++||+. ...|..... ...
T Consensus 80 l~~~d~~g~~~~~~~~~----~~~-~~~~~~~~~~l~v~t~------------~~~l~~~d~~g~~~~~~~~~----~~~ 138 (330)
T 3hxj_A 80 VYAINPDGTEKWRFDTK----KAI-VSDFTIFEDILYVTSM------------DGHLYAINTDGTEKWRFKTK----KAI 138 (330)
T ss_dssp EEEECCCGGGGGGSCC----------CCEEEETTEEEEECT------------TSEEEEECTTSCEEEEEECS----SCC
T ss_pred EEEECCCCcEEEEEECC----CCc-ccCceEECCEEEEEec------------CCEEEEEcCCCCEEEEEcCC----Cce
Confidence 889987432 3432211 111 1122233888887432 1458889887 335665432 111
Q ss_pred ceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCC-CceEEe
Q 006473 181 SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEI 224 (643)
Q Consensus 181 s~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t-~~W~~v 224 (643)
..+.+.. ++.||+ |.. ...+++||+.. ..|...
T Consensus 139 -~~~~~~~~~g~l~v-gt~---------~~~l~~~d~~g~~~~~~~ 173 (330)
T 3hxj_A 139 -YATPIVSEDGTIYV-GSN---------DNYLYAINPDGTEKWRFK 173 (330)
T ss_dssp -CSCCEECTTSCEEE-ECT---------TSEEEEECTTSCEEEEEE
T ss_pred -eeeeEEcCCCEEEE-EcC---------CCEEEEECCCCCEeEEEe
Confidence 1223344 567766 321 24688898872 225543
No 240
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=82.48 E-value=16 Score=40.66 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=47.3
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCc
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~ 151 (643)
.++.+.| +++.++++..............++++|+.+.+.+.+........+..+.+..-+++.++|+..
T Consensus 64 ~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-------- 133 (723)
T 1xfd_A 64 IRYEISP--DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-------- 133 (723)
T ss_dssp SEEEECT--TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--------
T ss_pred ceEEECC--CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC--------
Confidence 4455666 677677765321111122347899999999877666543211111111111114444444432
Q ss_pred ceecCeEEEEECCCCcEEEecc
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNL 173 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~ 173 (643)
+.+|++|+.++....+..
T Consensus 134 ----~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 134 ----NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp ----TEEEEESSSSSCCEEEEC
T ss_pred ----CeEEEEECCCCceEEEec
Confidence 368888888877666644
No 241
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=82.26 E-value=11 Score=36.27 Aligned_cols=101 Identities=20% Similarity=0.490 Sum_probs=55.4
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcE--EEecC--CCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISS--PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYK 156 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W--~~l~s--~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~ 156 (643)
++++|+|=|. .+|+|+.....+ ..|.. +.+|. .--++...++++|+|-| +
T Consensus 28 ~g~~yfFkg~-----------~~Wr~~~~~~~~~p~~Is~~wpgLP~--~IDAA~~~~~~~yfFkG-------------~ 81 (219)
T 1hxn_A 28 HGATYVFSGS-----------HYWRLDTNRDGWHSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQD-------------T 81 (219)
T ss_dssp TSCEEEEETT-----------EEEESSSSSCTTCCEEGGGTCTTSCS--SCSEEEEETTEEEEEET-------------T
T ss_pred CCcEEEEeCC-----------EEEEEcCCCCCCCceEhhhhccCCCC--CccEEEEECCcEEEecC-------------C
Confidence 6889998883 456665443221 12221 12232 22334445899999977 4
Q ss_pred eEEEEECCCC-cE-----EEecc-CCCCCC--Cce-eEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 157 DFWMLDLKTN-QW-----EQLNL-KGCPSP--RSG-HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 157 dv~~yD~~t~-~W-----~~~~~-~g~P~~--Rs~-h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
.+|+|+..++ +- ..+.. .|+|.. ..+ -+++.+ ++++|+|-| +..|+||..+
T Consensus 82 ~yw~~~~~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG-----------~~ywr~d~~~ 144 (219)
T 1hxn_A 82 KVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-----------RRLWWLDLKS 144 (219)
T ss_dssp EEEEEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-----------TEEEEEEGGG
T ss_pred EEEEEeCCCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC-----------CEEEEEeCCC
Confidence 6899986532 11 11211 233433 112 233333 579999987 3578999764
No 242
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=81.63 E-value=69 Score=37.27 Aligned_cols=110 Identities=11% Similarity=0.116 Sum_probs=56.4
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCc
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~ 151 (643)
.++++.| ++.+++.|+. + ..+++|+..+.+-..... ....-.+++...+.+++.|+..
T Consensus 21 ~~lafsp--dg~~lAsgs~--D-------g~I~lw~~~~~~~~~~~~----~~~~V~~l~fspg~~L~S~s~D------- 78 (902)
T 2oaj_A 21 IAAAFDF--TQNLLAIATV--T-------GEVHIYGQQQVEVVIKLE----DRSAIKEMRFVKGIYLVVINAK------- 78 (902)
T ss_dssp EEEEEET--TTTEEEEEET--T-------SEEEEECSTTCEEEEECS----SCCCEEEEEEETTTEEEEEETT-------
T ss_pred EEEEECC--CCCEEEEEeC--C-------CEEEEEeCCCcEEEEEcC----CCCCEEEEEEcCCCEEEEEECc-------
Confidence 3455666 6778888883 2 367788877655433211 1111122222334445555431
Q ss_pred ceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
+.+.++|+.+.+....-. .+. .-.++.+ ++..++.|+.+ ..|.+||+.+..-
T Consensus 79 ----~~v~lWd~~~~~~~~~~~--~~~---~V~~v~~sp~g~~l~sgs~d---------g~V~lwd~~~~~~ 132 (902)
T 2oaj_A 79 ----DTVYVLSLYSQKVLTTVF--VPG---KITSIDTDASLDWMLIGLQN---------GSMIVYDIDRDQL 132 (902)
T ss_dssp ----CEEEEEETTTCSEEEEEE--CSS---CEEEEECCTTCSEEEEEETT---------SCEEEEETTTTEE
T ss_pred ----CeEEEEECCCCcEEEEEc--CCC---CEEEEEECCCCCEEEEEcCC---------CcEEEEECCCCcc
Confidence 467888988765432211 111 1122222 44555556532 4578888887653
No 243
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=81.49 E-value=24 Score=34.70 Aligned_cols=144 Identities=15% Similarity=0.104 Sum_probs=73.0
Q ss_pred CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEE
Q 006473 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 135 ~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
+.+++.|+.. ..+.+||+.+........ .......-.++.+ ++.+++.|+.+ ..+.
T Consensus 54 g~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d---------g~v~ 111 (368)
T 3mmy_A 54 GNFLIAGSWA-----------NDVRCWEVQDSGQTIPKA--QQMHTGPVLDVCWSDDGSKVFTASCD---------KTAK 111 (368)
T ss_dssp SEEEEEEETT-----------SEEEEEEECTTSCEEEEE--EEECSSCEEEEEECTTSSEEEEEETT---------SEEE
T ss_pred ceEEEEECCC-----------CcEEEEEcCCCCceeEEE--eccccCCEEEEEECcCCCEEEEEcCC---------CcEE
Confidence 4777877753 346777777633222111 0001111122233 45566666642 4688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCC
Q 006473 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (643)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g 291 (643)
+||+.+.....+... ..+.....+... ++.+++.|+.++. +.+||+.+.+-...-.
T Consensus 112 iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~----------------i~vwd~~~~~~~~~~~-- 168 (368)
T 3mmy_A 112 MWDLSSNQAIQIAQH-----DAPVKTIHWIKAPNYSCVMTGSWDKT----------------LKFWDTRSSNPMMVLQ-- 168 (368)
T ss_dssp EEETTTTEEEEEEEC-----SSCEEEEEEEECSSCEEEEEEETTSE----------------EEEECSSCSSCSEEEE--
T ss_pred EEEcCCCCceeeccc-----cCceEEEEEEeCCCCCEEEEccCCCc----------------EEEEECCCCcEEEEEe--
Confidence 899988775554332 222222222113 6677888887654 7788876654222211
Q ss_pred CCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 292 MPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 292 ~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
......++......+++.++. +.+.+|++...
T Consensus 169 ---~~~~~~~~~~~~~~~~~~~~~---------------~~i~~~~~~~~ 200 (368)
T 3mmy_A 169 ---LPERCYCADVIYPMAVVATAE---------------RGLIVYQLENQ 200 (368)
T ss_dssp ---CSSCEEEEEEETTEEEEEEGG---------------GCEEEEECSSS
T ss_pred ---cCCCceEEEecCCeeEEEeCC---------------CcEEEEEeccc
Confidence 112333444555555444332 34788888765
No 244
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=81.24 E-value=37 Score=33.28 Aligned_cols=108 Identities=8% Similarity=0.041 Sum_probs=51.4
Q ss_pred cEEEEECCCCcEEEecCCCCCCCc--eeeEEEEE-CCEEEEE----eCccCC--CCCCcceecCeEEEEECCCCcEEEec
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPR--SAHQAVSW-KNYLYIF----GGEFTS--PNQERFHHYKDFWMLDLKTNQWEQLN 172 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pR--s~ha~~~~-~~~iyvf----GG~~~~--~~~~~~~~~~dv~~yD~~t~~W~~~~ 172 (643)
.|++|++. ++.+.+.... +..+ .-..++.. ++.||+. |-.... ...........+|+||+.+++++.+.
T Consensus 108 ~v~~~~~~-g~~~~~~~~~-~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 185 (305)
T 3dr2_A 108 AITRSDAD-GQAHLLVGRY-AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA 185 (305)
T ss_dssp EEEEECTT-SCEEEEECEE-TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred EEEEECCC-CCEEEEEecc-CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence 57788876 6666554221 1111 11223333 6778885 321100 00000001257999999888877664
Q ss_pred cCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 173 LKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 173 ~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
.... -..++.. +..||+....... ...+.+++|++....
T Consensus 186 --~~~~---p~gl~~spdg~~lyv~~~~~~~----~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 186 --DLDH---PNGLAFSPDEQTLYVSQTPEQG----HGSVEITAFAWRDGA 226 (305)
T ss_dssp --EESS---EEEEEECTTSSEEEEEECCC-------CCCEEEEEEEETTE
T ss_pred --cCCC---CcceEEcCCCCEEEEEecCCcC----CCCCEEEEEEecCCC
Confidence 1111 1233333 3457776432100 012578899887554
No 245
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=80.79 E-value=12 Score=35.20 Aligned_cols=102 Identities=18% Similarity=0.414 Sum_probs=57.9
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcE---EEecCC--CCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcce
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW---KVISSP--NSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFH 153 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W---~~l~s~--~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~ 153 (643)
++++|+|-| +.+|+|+..+... +.|... ..|..+. -++... ++++|+|-|
T Consensus 61 ~g~~yfFkg-----------~~yw~~~~~~~~~gyPk~I~~~~~glP~~~I-DAA~~~~~~g~~yfFkG----------- 117 (196)
T 3c7x_A 61 DGKFVFFKG-----------DKHWVFDEASLEPGYPKHIKELGRGLPTDKI-DAALFWMPNGKTYFFRG----------- 117 (196)
T ss_dssp TSCEEEEET-----------TEEEEEETTEECTTCSEEGGGTCBSCCSSCC-SEEEEETTTTEEEEEET-----------
T ss_pred CCcEEEecC-----------CEEEEEeCCcccCCCCeEhhhcCCCCCCCcc-cEEEEEccCCEEEEEEC-----------
Confidence 688999988 3678887542110 122221 1332222 233333 689999987
Q ss_pred ecCeEEEEECCCCcEEE-----ecc-CCCCCCCceeEEEEE-CC-EEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 154 HYKDFWMLDLKTNQWEQ-----LNL-KGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 154 ~~~dv~~yD~~t~~W~~-----~~~-~g~P~~Rs~h~~~~~-~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
+..|+||..+++-.. +.. .++|. .-.++..+ ++ ++|+|-| +..|+||..+.+
T Consensus 118 --~~yw~yd~~~~~v~~gyPk~i~~~~gip~--~idaAf~~~~~~~~YfFkg-----------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 118 --NKYYRFNEELRAVDSEYPKNIKVWEGIPE--SPRGSFMGSDEVFTYFYKG-----------NKYWKFNNQKLK 177 (196)
T ss_dssp --TEEEEEETTTTEECTTCSEEGGGSBTCCS--SCSEEEECTTSSEEEEEET-----------TEEEEEETTTTE
T ss_pred --CEEEEEeCCcccccCCCCccHHHCCCcCC--CcceeEEecCCCEEEEEEC-----------CEEEEEECCcce
Confidence 468999987754221 111 12232 22344445 44 8999977 457899987653
No 246
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=80.57 E-value=48 Score=32.90 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=55.3
Q ss_pred CEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 82 ~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
+.+++.|+. + +.+..||+.+.+-..+.... ....-.+++.. ++.+++.|+.. ..+.+
T Consensus 139 ~~~l~s~s~--d-------g~i~~wd~~~~~~~~~~~~~--~~~~i~~~~~~pdg~~lasg~~d-----------g~i~i 196 (343)
T 3lrv_A 139 TEYFIWADN--R-------GTIGFQSYEDDSQYIVHSAK--SDVEYSSGVLHKDSLLLALYSPD-----------GILDV 196 (343)
T ss_dssp CCEEEEEET--T-------CCEEEEESSSSCEEEEECCC--SSCCCCEEEECTTSCEEEEECTT-----------SCEEE
T ss_pred CCEEEEEeC--C-------CcEEEEECCCCcEEEEEecC--CCCceEEEEECCCCCEEEEEcCC-----------CEEEE
Confidence 556666772 2 36888999888765443222 11112222222 56777777753 35788
Q ss_pred EECCCCcEE--EeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 161 LDLKTNQWE--QLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 161 yD~~t~~W~--~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
||+.+..-. .+.. ... ..-.++.+ ++.+++.|+ . +.+.+||+.+..
T Consensus 197 wd~~~~~~~~~~~~~---~h~-~~v~~l~fs~~g~~l~s~~-~---------~~v~iwd~~~~~ 246 (343)
T 3lrv_A 197 YNLSSPDQASSRFPV---DEE-AKIKEVKFADNGYWMVVEC-D---------QTVVCFDLRKDV 246 (343)
T ss_dssp EESSCTTSCCEECCC---CTT-SCEEEEEECTTSSEEEEEE-S---------SBEEEEETTSST
T ss_pred EECCCCCCCccEEec---cCC-CCEEEEEEeCCCCEEEEEe-C---------CeEEEEEcCCCC
Confidence 999877533 2211 011 11122233 455555555 2 258889987653
No 247
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=80.53 E-value=16 Score=37.99 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=60.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--E-EEecCCCCCCC-ceeeEEEEE--CCEEEEEeCccCCCCCCccee
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--W-KVISSPNSPPP-RSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W-~~l~s~~~P~p-Rs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~ 154 (643)
++++|+|=| +.+|+|+..+.. + +.|.....|.. ..--++... ++++|+|-|
T Consensus 236 ~g~~~fFkg-----------~~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG------------ 292 (365)
T 3ba0_A 236 RNQVFLFKD-----------DKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD------------ 292 (365)
T ss_dssp GTEEEEEET-----------TEEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET------------
T ss_pred CCEEEEEeC-----------CEEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC------------
Confidence 578999877 356777643211 1 12332223331 122333344 589999977
Q ss_pred cCeEEEEECCCCcEEEeccCC----C-CCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEE
Q 006473 155 YKDFWMLDLKTNQWEQLNLKG----C-PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (643)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g----~-P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~ 223 (643)
+.+|+||..+++-..--++. . ..+..-.++..+ ++++|+|-| +..|+||..+.+-..
T Consensus 293 -~~yw~yd~~~~~v~~gyPk~I~~~f~g~p~~iDaA~~~~~g~~YfFkg-----------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 293 -NQYWRYDERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFFQG-----------SNQFEYDFLLQRITK 355 (365)
T ss_dssp -TEEEEEETTTTEECSSCCCCHHHHSTTCCSSCSEEEEETTTEEEEEET-----------TEEEEEETTTTEEEE
T ss_pred -CEEEEEeCCcceecCCCCcchhhcCCCCCCccceeeEecCCcEEEEeC-----------CEEEEEECCccEEec
Confidence 46899998765432211110 0 112223445556 889999976 458999988766544
No 248
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=80.27 E-value=47 Score=32.59 Aligned_cols=106 Identities=8% Similarity=0.004 Sum_probs=57.5
Q ss_pred CEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCC
Q 006473 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEK 267 (643)
Q Consensus 190 ~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 267 (643)
+.+++.|+.+ ..+.+||+.+..-...-.. . ..+.. ++... ++.+++.|+.++.
T Consensus 85 ~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~-~---~~~i~--~~~~~~~~~~~l~s~~~dg~---------- 139 (366)
T 3k26_A 85 HPLLAVAGSR---------GIIRIINPITMQCIKHYVG-H---GNAIN--ELKFHPRDPNLLLSVSKDHA---------- 139 (366)
T ss_dssp CEEEEEEETT---------CEEEEECTTTCCEEEEEES-C---CSCEE--EEEECSSCTTEEEEEETTSC----------
T ss_pred CCEEEEecCC---------CEEEEEEchhceEeeeecC-C---CCcEE--EEEECCCCCCEEEEEeCCCe----------
Confidence 5677777742 3588888876543222111 0 11111 22222 5678888887665
Q ss_pred CceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 268 GIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
+.+||+.+.+-...-.. .......-.++++. ++..++.|+.. +.|.+||+.+.
T Consensus 140 ------i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~ 193 (366)
T 3k26_A 140 ------LRLWNIQTDTLVAIFGG-VEGHRDEVLSADYDLLGEKIMSCGMD--------------HSLKLWRINSK 193 (366)
T ss_dssp ------EEEEETTTTEEEEEECS-TTSCSSCEEEEEECTTSSEEEEEETT--------------SCEEEEESCSH
T ss_pred ------EEEEEeecCeEEEEecc-cccccCceeEEEECCCCCEEEEecCC--------------CCEEEEECCCC
Confidence 88899887654443210 00112222334443 46677777653 35889998764
No 249
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=80.01 E-value=17 Score=38.84 Aligned_cols=151 Identities=11% Similarity=0.178 Sum_probs=78.8
Q ss_pred EEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccC----CCCCCCceeEEEEE--CCEEEEEeeeecCC
Q 006473 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK----GCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (643)
Q Consensus 129 a~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~----g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~ 202 (643)
+++.+.+.+|+|-|. -+|+++.....+...... ++|.. --++... ++.+|+|=|
T Consensus 267 Ai~~~~ge~y~Fkg~-------------~~wr~~~~~~~~~p~~I~~~Wp~LP~~--iDAa~~~~~~g~~~fFKg----- 326 (450)
T 1su3_A 267 AITTIRGEVMFFKDR-------------FYMRTNPFYPEVELNFISVFWPQLPNG--LEAAYEFADRDEVRFFKG----- 326 (450)
T ss_dssp EEEEETTEEEEEETT-------------EEEECCTTSSSCEEEEGGGTCTTSCSS--CCEEEEEGGGTEEEEEET-----
T ss_pred eEEecCCeEEEEeCC-------------EEEEEcCCCCcccceehhHhccCCCCC--eeEEEEEcCCCeEEEEeC-----
Confidence 455679999999883 467877655443322111 12321 1233333 689999977
Q ss_pred CceeeeccEEEEEcCCCc--e-EEec-cCCCCCCCC--CccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEE
Q 006473 203 REVRYYNDLYVFDLDQFK--W-QEIK-PRFGSMWPS--PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLW 275 (643)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~--W-~~v~-~~~~~~~P~--~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~ 275 (643)
+.+|+|+..+-. + ..|. .. + +|. .....++... ++++|+|=|. ..|
T Consensus 327 ------~~~W~~~~~~~~~gyP~~i~~~~--g-~P~~~~~IDAA~~~~~~~k~yfFkG~------------------~yw 379 (450)
T 1su3_A 327 ------NKYWAVQGQNVLHGYPKDIYSSF--G-FPRTVKHIDAALSEENTGKTYFFVAN------------------KYW 379 (450)
T ss_dssp ------TEEEEEETTEECTTCSEEHHHHH--C-CCTTCCCCCEEEEETTTTEEEEEETT------------------EEE
T ss_pred ------CEEEEecCCcccCCCceeeehhh--c-CCCCCCccceEEEEcCCCeEEEEeCC------------------EEE
Confidence 346777642100 0 1111 00 0 121 1222222222 6899999763 388
Q ss_pred EEeCCCCeeE-----Eecc--CCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEE
Q 006473 276 SLDPRTWEWS-----KVKK--IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (643)
Q Consensus 276 ~yd~~t~~W~-----~l~~--~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (643)
+||..+.+-. .+.. .|. | ..--++...++++|+|=|. ..|+||..+.+=..
T Consensus 380 ~yd~~~~~~~~gYPk~I~~~fpgi-p--~~iDAA~~~~g~~YFFkg~----------------~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 380 RYDEYKRSMDPGYPKMIAHDFPGI-G--HKVDAVFMKDGFFYFFHGT----------------RQYKFDPKTKRILT 437 (450)
T ss_dssp EEETTTTEECSSCSEEHHHHSTTS-C--SCCSEEEEETTEEEEEETT----------------EEEEEETTTTEEEE
T ss_pred EEeCCCccccCCCCcchhhcCCCC-C--CCccEEEEcCCeEEEEeCC----------------EEEEEECCcceEec
Confidence 9987654321 1110 121 2 1122344468999999874 37899988766443
No 250
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=79.97 E-value=51 Score=32.81 Aligned_cols=96 Identities=11% Similarity=0.034 Sum_probs=48.6
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
.|++||+.+++++.+.......+......+.+ ++.+|+.. ...... .....+|+|+ +.+...+... ..
T Consensus 110 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~-~~~~~~----~~~~~l~~~~--~g~~~~~~~~---~~ 179 (326)
T 2ghs_A 110 GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGT-MGRKAE----TGAGSIYHVA--KGKVTKLFAD---IS 179 (326)
T ss_dssp EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEE-EETTCC----TTCEEEEEEE--TTEEEEEEEE---ES
T ss_pred CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEe-CCCcCC----CCceEEEEEe--CCcEEEeeCC---Cc
Confidence 48999999998887754221111112222222 56777643 211100 0135799999 5666554321 01
Q ss_pred CceeEEEEE-C-CEEEEEeeeecCCCceeeeccEEEEEcC
Q 006473 180 RSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (643)
Q Consensus 180 Rs~h~~~~~-~-~~lyvfGG~~~~~~~~~~~~dv~~yD~~ 217 (643)
. ....+.. + +.||+.... .+.|++||+.
T Consensus 180 ~-~~~i~~s~dg~~lyv~~~~---------~~~I~~~d~~ 209 (326)
T 2ghs_A 180 I-PNSICFSPDGTTGYFVDTK---------VNRLMRVPLD 209 (326)
T ss_dssp S-EEEEEECTTSCEEEEEETT---------TCEEEEEEBC
T ss_pred c-cCCeEEcCCCCEEEEEECC---------CCEEEEEEcc
Confidence 1 1223332 3 367775321 3578999875
No 251
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=79.95 E-value=55 Score=36.82 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=43.6
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCc
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~ 151 (643)
..+.| +++.++|+......-......++|.||+.+++...+... +. . ...+.+ +++.++|+-
T Consensus 67 ~~~Sp--dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~--~~-~--~~~~~~SPdG~~la~~~--------- 130 (740)
T 4a5s_A 67 YSISP--DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERI--PN-N--TQWVTWSPVGHKLAYVW--------- 130 (740)
T ss_dssp EEECT--TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC--CT-T--EEEEEECSSTTCEEEEE---------
T ss_pred eEECC--CCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccC--CC-c--ceeeEECCCCCEEEEEE---------
Confidence 34455 566666665322222223457899999999987666432 11 1 122223 343334431
Q ss_pred ceecCeEEEEECCCCcEEEecc
Q 006473 152 FHHYKDFWMLDLKTNQWEQLNL 173 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~ 173 (643)
-+++|++|..++.-.++..
T Consensus 131 ---~~~i~~~~~~~~~~~~lt~ 149 (740)
T 4a5s_A 131 ---NNDIYVKIEPNLPSYRITW 149 (740)
T ss_dssp ---TTEEEEESSTTSCCEECCS
T ss_pred ---CCeEEEEECCCCceEEEcC
Confidence 1467788877766555544
No 252
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=79.46 E-value=25 Score=33.84 Aligned_cols=105 Identities=14% Similarity=0.133 Sum_probs=56.3
Q ss_pred ECCEEEEEeCccCCCCCCcceecCeEEEEECCCC----cEEE----ecc--CCCCCC--CceeEEE-EE--CCEEEEEee
Q 006473 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN----QWEQ----LNL--KGCPSP--RSGHRMV-LY--KHKIIVFGG 197 (643)
Q Consensus 133 ~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~----~W~~----~~~--~g~P~~--Rs~h~~~-~~--~~~lyvfGG 197 (643)
..+.+|+|-| +.+|+||..++ .... +.. .++|.. ...--++ .+ ++++|+|-|
T Consensus 69 ~~g~~~fFkg-------------~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG 135 (225)
T 3oyo_A 69 EASEAYVFSG-------------NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG 135 (225)
T ss_dssp STTEEEEEET-------------TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET
T ss_pred CCCeEEEEcC-------------CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC
Confidence 4799999987 46899986432 2211 110 112321 1122233 32 689999987
Q ss_pred eecCCCceeeeccEEEEEcCCCceEEeccCCCC-CCCC------CccceeEEE--eCCEEEEEcCCCCCCCCccCCCCCC
Q 006473 198 FYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS-MWPS------PRSGFQFFV--YQDEVFLYGGYSKEVSTDKNQSEKG 268 (643)
Q Consensus 198 ~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~-~~P~------~R~~~s~~~--~~~~iyv~GG~~~~~~~~~~~~~~~ 268 (643)
+..|+||....+...- +.+-. ..|. +..--++.. .++++|+|-|.
T Consensus 136 -----------~~yw~~d~~~~~~~~g-Pk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~-------------- 189 (225)
T 3oyo_A 136 -----------NKYVRIAYDSKQLVGN-IRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ-------------- 189 (225)
T ss_dssp -----------TEEEEEETTTTEEEEE-EEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT--------------
T ss_pred -----------CeEEEEECCCCeecCC-CcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC--------------
Confidence 4579999766554331 11000 0111 221223333 37899999773
Q ss_pred ceeeeEEEEeCC
Q 006473 269 IIHSDLWSLDPR 280 (643)
Q Consensus 269 ~~~~dv~~yd~~ 280 (643)
..|+||..
T Consensus 190 ----~ywr~d~~ 197 (225)
T 3oyo_A 190 ----NYVRIDFT 197 (225)
T ss_dssp ----EEEEEECC
T ss_pred ----EEEEEeCC
Confidence 37899876
No 253
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=79.22 E-value=48 Score=34.00 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=39.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.+++.|+. -+.+.+||+.+.+-...-.. +.......++.+ ++.+++.|+.. ..+
T Consensus 181 ~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~~~d-----------g~i 238 (437)
T 3gre_A 181 EKSLLVALTN---------LSRVIIFDIRTLERLQIIEN--SPRHGAVSSICIDEECCVLILGTTR-----------GII 238 (437)
T ss_dssp SCEEEEEEET---------TSEEEEEETTTCCEEEEEEC--CGGGCCEEEEEECTTSCEEEEEETT-----------SCE
T ss_pred CCCEEEEEeC---------CCeEEEEeCCCCeeeEEEcc--CCCCCceEEEEECCCCCEEEEEcCC-----------CeE
Confidence 4677777772 24788999988764332111 111122223333 56677777653 358
Q ss_pred EEEECCCCcEEE
Q 006473 159 WMLDLKTNQWEQ 170 (643)
Q Consensus 159 ~~yD~~t~~W~~ 170 (643)
.+||+.+.....
T Consensus 239 ~iwd~~~~~~~~ 250 (437)
T 3gre_A 239 DIWDIRFNVLIR 250 (437)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEEcCCccEEE
Confidence 889998866543
No 254
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=78.99 E-value=7.3 Score=37.42 Aligned_cols=102 Identities=20% Similarity=0.434 Sum_probs=57.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc---EEEecCCCCCCC-ceeeEEEEE--CCEEEEEeCccCCCCCCccee
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE---WKVISSPNSPPP-RSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~---W~~l~s~~~P~p-Rs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~ 154 (643)
++++|+|=| +.+|+|+..+.. =+.|.....|.. ..-.++... ++++|+|-|
T Consensus 87 ~~k~yfFkG-----------~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG------------ 143 (218)
T 1gen_A 87 EEKAVFFAG-----------NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG------------ 143 (218)
T ss_dssp TTEEEEEET-----------TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET------------
T ss_pred CCEEEEEeC-----------CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC------------
Confidence 578999988 367888842100 012222122221 122344443 689999987
Q ss_pred cCeEEEEECCCCcEEE-----ec--cCCCCCCCceeEEEEEC--CEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 155 YKDFWMLDLKTNQWEQ-----LN--LKGCPSPRSGHRMVLYK--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 155 ~~dv~~yD~~t~~W~~-----~~--~~g~P~~Rs~h~~~~~~--~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
+..|+||..+++-.. +. -.++| ..-.++..++ +.+|+|-| +..|+||..+.
T Consensus 144 -~~ywr~d~~~~~v~~gyPr~i~~~w~g~p--~~idaAf~~~~~g~~YfFkg-----------~~y~~~~~~~~ 203 (218)
T 1gen_A 144 -DKFWRYNEVKKKMDPGFPKLIADAWNAIP--DNLDAVVDLQGGGHSYFFKG-----------AYYLKLENQSL 203 (218)
T ss_dssp -TEEEEEETTTTEECSSCCEEHHHHSSSCC--SSCSEEEECTTTCEEEEEET-----------TEEEEEETTEE
T ss_pred -CEEEEEECccccccCCCCcchhhccCCCC--CCCCEEEEEcCCCcEEEEEC-----------CEEEEEECCce
Confidence 468999987764221 11 01222 2234555554 89999977 35777876543
No 255
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=78.14 E-value=63 Score=32.91 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=18.1
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCc
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE 112 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~ 112 (643)
.++...| ++.+++.||. + +.+.+|++.+..
T Consensus 32 ~~v~~s~--~g~~la~g~~--d-------g~v~iw~~~~~~ 61 (447)
T 3dw8_B 32 STVEFNH--SGELLATGDK--G-------GRVVIFQQEQEN 61 (447)
T ss_dssp EEEEECS--SSSEEEEEET--T-------SEEEEEEECC--
T ss_pred EEEEECC--CCCEEEEEcC--C-------CeEEEEEecCCC
Confidence 3444554 6778888883 2 367778877654
No 256
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=78.12 E-value=86 Score=34.43 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=46.0
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccCCC-CCCC---ceeEEEEECCEEEEEeeeecCCC
Q 006473 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGC-PSPR---SGHRMVLYKHKIIVFGGFYDTLR 203 (643)
Q Consensus 130 ~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~-P~~R---s~h~~~~~~~~lyvfGG~~~~~~ 203 (643)
-++.++.||+.+.. ..++.||..+.+ |+.-..... ..+. ...+.++.+++||+...
T Consensus 64 P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------ 125 (582)
T 1flg_A 64 AIVSDGVIYVTASY------------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------ 125 (582)
T ss_dssp CEEETTEEEEEETT------------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------
T ss_pred cEEECCEEEEEcCC------------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------
Confidence 34569999998752 238899998774 876543111 0001 11234567888887421
Q ss_pred ceeeeccEEEEEcCCCc--eEEec
Q 006473 204 EVRYYNDLYVFDLDQFK--WQEIK 225 (643)
Q Consensus 204 ~~~~~~dv~~yD~~t~~--W~~v~ 225 (643)
...|+.+|..+.+ |+.-.
T Consensus 126 ----dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 126 ----DASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp ----TTEEEEEESSSCCEEEEEEC
T ss_pred ----CCEEEEEECCCCCEEeeecC
Confidence 2468999998765 87643
No 257
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=77.32 E-value=73 Score=33.88 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=13.5
Q ss_pred CceeEEEEE-CCEEEEEeee
Q 006473 180 RSGHRMVLY-KHKIIVFGGF 198 (643)
Q Consensus 180 Rs~h~~~~~-~~~lyvfGG~ 198 (643)
-..|++++. ++.||.+|-.
T Consensus 265 G~~hs~alt~~G~v~~wG~n 284 (473)
T 3of7_A 265 GENHCFALTKDNKLVSWGLN 284 (473)
T ss_dssp CSSEEEEEETTSCEEEEEEC
T ss_pred CCCeEEEEecCCCEEEeCCC
Confidence 355777665 6799999853
No 258
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=77.14 E-value=67 Score=32.69 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=19.0
Q ss_pred CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 006473 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (643)
++..++.|+.++. +.+||+.+..-..+
T Consensus 353 ~~~~l~s~s~dg~----------------v~iwd~~~~~~~~~ 379 (447)
T 3dw8_B 353 SDSVVMTGSYNNF----------------FRMFDRNTKRDITL 379 (447)
T ss_dssp TSSEEEEECSTTE----------------EEEEETTTCCEEEE
T ss_pred CCCEEEEeccCCE----------------EEEEEcCCCcceee
Confidence 5566688887655 78888887766554
No 259
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=76.59 E-value=83 Score=33.45 Aligned_cols=105 Identities=5% Similarity=-0.069 Sum_probs=51.5
Q ss_pred CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCC
Q 006473 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEK 267 (643)
Q Consensus 189 ~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~ 267 (643)
++.+++.|+.+ ..+.+||.....-..+... .. .-.+++.. ++.+++.|+.++.
T Consensus 437 d~~~l~~~~~d---------~~v~~w~~~~~~~~~~~~~-----~~--~v~~~~~spd~~~las~~~d~~---------- 490 (577)
T 2ymu_A 437 DDQTIASASDD---------KTVKLWNRNGQLLQTLTGH-----SS--SVRGVAFSPDGQTIASASDDKT---------- 490 (577)
T ss_dssp TSSEEEEEETT---------SEEEEEETTSCEEEEEECC-----SS--CEEEEEECTTSCEEEEEETTSE----------
T ss_pred CCCEEEEEcCC---------CEEEEEECCCCEEEEEcCC-----CC--CEEEEEEcCCCCEEEEEeCCCE----------
Confidence 55666666642 3467777654433333222 11 11223333 6677777776554
Q ss_pred CceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEE
Q 006473 268 GIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (643)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (643)
+.+||.....-..+.. .... -.++++. ++++++.||.. ..|.+||.....-.
T Consensus 491 ------i~iw~~~~~~~~~~~~----h~~~-v~~l~~s~dg~~l~s~~~d--------------g~v~lwd~~~~~~~ 543 (577)
T 2ymu_A 491 ------VKLWNRNGQLLQTLTG----HSSS-VRGVAFSPDGQTIASASDD--------------KTVKLWNRNGQLLQ 543 (577)
T ss_dssp ------EEEEETTSCEEEEEEC----CSSC-EEEEEECTTSSCEEEEETT--------------SEEEEECTTSCEEE
T ss_pred ------EEEEcCCCCEEEEEeC----CCCC-EEEEEEcCCCCEEEEEECc--------------CEEEEEeCCCCEEE
Confidence 5667754433222221 1111 1233333 56777777653 34888886554333
No 260
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=76.05 E-value=1.3e+02 Score=35.45 Aligned_cols=106 Identities=11% Similarity=0.079 Sum_probs=55.8
Q ss_pred cEE-EEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 102 DLY-RYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 102 dv~-~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
.+| .|++.+.....+. .. ... .+.++.. +++.+++++. -..++++|+.+++-..+... ...
T Consensus 359 ~l~~~~d~~~~~~~~l~-~~--~~~-~~~~~~SpDG~~la~~~~-----------~~~v~~~d~~tg~~~~~~~~--~~~ 421 (1045)
T 1k32_A 359 DFLGIYDYRTGKAEKFE-EN--LGN-VFAMGVDRNGKFAVVAND-----------RFEIMTVDLETGKPTVIERS--REA 421 (1045)
T ss_dssp EEEEEEETTTCCEEECC-CC--CCS-EEEEEECTTSSEEEEEET-----------TSEEEEEETTTCCEEEEEEC--SSS
T ss_pred ceEEEEECCCCCceEec-CC--ccc-eeeeEECCCCCEEEEECC-----------CCeEEEEECCCCceEEeccC--CCC
Confidence 577 7888887766665 21 112 2222222 4555555542 24799999999887766431 111
Q ss_pred CceeEEEEECCEEEEEeeeecC-CCceeeeccEEEEEcCCCceEEe
Q 006473 180 RSGHRMVLYKHKIIVFGGFYDT-LREVRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 180 Rs~h~~~~~~~~lyvfGG~~~~-~~~~~~~~dv~~yD~~t~~W~~v 224 (643)
.....+..-+++.+++++.... .........++++|+.+.+...+
T Consensus 422 ~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l 467 (1045)
T 1k32_A 422 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 467 (1045)
T ss_dssp CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence 1111112225565566654320 00001246899999988764444
No 261
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=75.39 E-value=81 Score=32.72 Aligned_cols=150 Identities=9% Similarity=0.079 Sum_probs=82.2
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv 211 (643)
++.||+.... -+.+.+||+.++.-..+... ....+ .++. ++.||+.... . ...+
T Consensus 141 ~g~lyv~d~~-----------~~~I~~id~~~g~~~~~~~~----~~~~~-ia~~~~g~~l~~~d~~-~-------~~~I 196 (409)
T 3hrp_A 141 NNTVLAYQRD-----------DPRVRLISVDDNKVTTVHPG----FKGGK-PAVTKDKQRVYSIGWE-G-------THTV 196 (409)
T ss_dssp TTEEEEEETT-----------TTEEEEEETTTTEEEEEEET----CCBCB-CEECTTSSEEEEEBSS-T-------TCEE
T ss_pred CCCEEEEecC-----------CCcEEEEECCCCEEEEeecc----CCCCc-eeEecCCCcEEEEecC-C-------CceE
Confidence 6789888652 24689999998877665442 12233 3332 4466665331 1 1268
Q ss_pred EEEEcCCCc-eEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEec
Q 006473 212 YVFDLDQFK-WQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (643)
Q Consensus 212 ~~yD~~t~~-W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (643)
++|++.... ...+..... +....-+++++. ++.||+..+ . ..+++||+.+.....+.
T Consensus 197 ~~~d~~~~~~~~~~g~~~~---~~~~~p~~iav~p~~g~lyv~d~-~----------------~~I~~~d~~~~~~~~~~ 256 (409)
T 3hrp_A 197 YVYMKASGWAPTRIGQLGS---TFSGKIGAVALDETEEWLYFVDS-N----------------KNFGRFNVKTQEVTLIK 256 (409)
T ss_dssp EEEEGGGTTCEEEEEECCT---TSCSCCCBCEECTTSSEEEEECT-T----------------CEEEEEETTTCCEEEEE
T ss_pred EEEEcCCCceeEEeeeccc---hhcCCcEEEEEeCCCCeEEEEEC-C----------------CcEEEEECCCCCEEEEe
Confidence 999987543 233321110 011112334444 678888432 1 24889999877765553
Q ss_pred cCCCCCCCcee-e-EEEEE--CCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 289 KIGMPPGPRAG-F-SMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 289 ~~g~~P~~R~g-~-s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
..+..+..... + .+++. ++.||+.... .+.|++|++...
T Consensus 257 ~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~--------------~~~I~~~~~~g~ 299 (409)
T 3hrp_A 257 QLELSGSLGTNPGPYLIYYFVDSNFYMSDQN--------------LSSVYKITPDGE 299 (409)
T ss_dssp ECCCCSCCCCSSCCEEEEETTTTEEEEEETT--------------TTEEEEECTTCC
T ss_pred cccccCCCCCCccccEEEeCCCCEEEEEeCC--------------CCEEEEEecCCC
Confidence 22111112222 2 56666 5888887432 356999998765
No 262
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=74.48 E-value=36 Score=40.20 Aligned_cols=148 Identities=16% Similarity=0.138 Sum_probs=77.4
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEE-EEECCCCcEEEeccCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFW-MLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~-~yD~~t~~W~~~~~~g~P~~ 179 (643)
..++.++........+... +..+..+.... ++..+++++. -..+| +||+.+.....+.. ...
T Consensus 317 ~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~s-dg~~l~~~s~-----------~~~l~~~~d~~~~~~~~l~~---~~~ 379 (1045)
T 1k32_A 317 GQAFIQDVSGTYVLKVPEP--LRIRYVRRGGD-TKVAFIHGTR-----------EGDFLGIYDYRTGKAEKFEE---NLG 379 (1045)
T ss_dssp TEEEEECTTSSBEEECSCC--SCEEEEEECSS-SEEEEEEEET-----------TEEEEEEEETTTCCEEECCC---CCC
T ss_pred CEEEEEcCCCCceEEccCC--CcceEEeeeEc-CCCeEEEEEC-----------CCceEEEEECCCCCceEecC---Ccc
Confidence 3678888888776665432 11122222223 5554555432 14688 99998887665541 111
Q ss_pred CceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCC
Q 006473 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (643)
Q Consensus 180 Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~ 256 (643)
. ...+.+ +++.+++++. -..++++|+.+.+-..+.... ..... +++.. +++.+++++...
T Consensus 380 ~--~~~~~~SpDG~~la~~~~---------~~~v~~~d~~tg~~~~~~~~~----~~~v~--~~~~SpDG~~la~~~~~~ 442 (1045)
T 1k32_A 380 N--VFAMGVDRNGKFAVVAND---------RFEIMTVDLETGKPTVIERSR----EAMIT--DFTISDNSRFIAYGFPLK 442 (1045)
T ss_dssp S--EEEEEECTTSSEEEEEET---------TSEEEEEETTTCCEEEEEECS----SSCCC--CEEECTTSCEEEEEEEEC
T ss_pred c--eeeeEECCCCCEEEEECC---------CCeEEEEECCCCceEEeccCC----CCCcc--ceEECCCCCeEEEEecCc
Confidence 1 122333 5555556553 247999999988766664221 11111 22222 555555554422
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEec
Q 006473 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (643)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (643)
. . .........++++|+.+.....+.
T Consensus 443 ~--~----~~~~~~~~~i~l~d~~~g~~~~l~ 468 (1045)
T 1k32_A 443 H--G----ETDGYVMQAIHVYDMEGRKIFAAT 468 (1045)
T ss_dssp S--S----TTCSCCEEEEEEEETTTTEEEECS
T ss_pred c--c----cccCCCCCeEEEEECCCCcEEEee
Confidence 0 0 000123467999999887755443
No 263
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=74.40 E-value=62 Score=30.96 Aligned_cols=57 Identities=11% Similarity=0.251 Sum_probs=33.9
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEE
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQ 170 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~ 170 (643)
+.|+++|+.+++...+-... .....-.++.+ ++.+++.|+.. ..+.++|+.+++-..
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~--~~~~~V~~v~~~~~~~~l~sgs~D-----------g~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQME--QPGEYISSVAWIKEGNYLAVGTSS-----------AEVQLWDVQQQKRLR 103 (318)
T ss_dssp TEEEEEETTTCCEEEEEECC--STTCCEEEEEECTTSSEEEEEETT-----------SEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCCEEEEEEec--CCCCeEEEEEECCCCCEEEEEECC-----------CcEEEeecCCceeEE
Confidence 46899999998766543221 11111223333 56677777753 357788988876443
No 264
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=73.01 E-value=87 Score=32.04 Aligned_cols=55 Identities=7% Similarity=-0.109 Sum_probs=31.6
Q ss_pred eeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCe--EEEeccccccccCccccccccCCcEEEEECCCCcEE
Q 006473 271 HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR--ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (643)
Q Consensus 271 ~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~--iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (643)
.+.++++|+.+.+-...-.. +...+++++- +++ +|+..+. .+.|.+||+.+.+=.
T Consensus 297 ~~~V~VID~~t~~vv~~i~~-----g~~p~~i~~s~Dg~~~l~v~~~~--------------~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 297 AKEVTSVTGLVGQTSSQISL-----GHDVDAISVAQDGGPDLYALSAG--------------TEVLHIYDAGAGDQD 354 (373)
T ss_pred CCeEEEEECCCCEEEEEEEC-----CCCcCeEEECCCCCeEEEEEcCC--------------CCeEEEEECCCCCEE
Confidence 36799999988765332222 2223444444 344 5544321 367999999886543
No 265
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=72.25 E-value=77 Score=31.07 Aligned_cols=144 Identities=14% Similarity=0.042 Sum_probs=69.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.+++.|+. -..+.+||+.+++-...-... ......+.+ ++.+++.|+.. ..+
T Consensus 76 dg~~l~s~s~---------D~~v~~wd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~D-----------~~i 131 (319)
T 3frx_A 76 DGAYALSASW---------DKTLRLWDVATGETYQRFVGH----KSDVMSVDIDKKASMIISGSRD-----------KTI 131 (319)
T ss_dssp TSSEEEEEET---------TSEEEEEETTTTEEEEEEECC----SSCEEEEEECTTSCEEEEEETT-----------SCE
T ss_pred CCCEEEEEeC---------CCEEEEEECCCCCeeEEEccC----CCcEEEEEEcCCCCEEEEEeCC-----------CeE
Confidence 5666666662 246788898887543221111 111122223 45677777653 346
Q ss_pred EEEECCCCcEEEeccCCCCCCCceeEEEEE-------CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCC
Q 006473 159 WMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (643)
Q Consensus 159 ~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-------~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~ 231 (643)
.+||+....-..+.. .... -..+... ++.+++.||.+ ..+.+||+.+..-... ..
T Consensus 132 ~vwd~~~~~~~~~~~---h~~~-v~~~~~~~~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~--~~--- 193 (319)
T 3frx_A 132 KVWTIKGQCLATLLG---HNDW-VSQVRVVPNEKADDDSVTIISAGND---------KMVKAWNLNQFQIEAD--FI--- 193 (319)
T ss_dssp EEEETTSCEEEEECC---CSSC-EEEEEECCC------CCEEEEEETT---------SCEEEEETTTTEEEEE--EC---
T ss_pred EEEECCCCeEEEEec---cCCc-EEEEEEccCCCCCCCccEEEEEeCC---------CEEEEEECCcchhhee--ec---
Confidence 677776544333321 1111 1111221 12345555542 3577888876543221 10
Q ss_pred CCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe
Q 006473 232 WPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (643)
Q Consensus 232 ~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (643)
.....-.+++.. ++.+++.||.++. +.+||+.+.+
T Consensus 194 -~h~~~v~~~~~sp~g~~l~s~~~dg~----------------i~iwd~~~~~ 229 (319)
T 3frx_A 194 -GHNSNINTLTASPDGTLIASAGKDGE----------------IMLWNLAAKK 229 (319)
T ss_dssp -CCCSCEEEEEECTTSSEEEEEETTCE----------------EEEEETTTTE
T ss_pred -CCCCcEEEEEEcCCCCEEEEEeCCCe----------------EEEEECCCCc
Confidence 011111122222 6677888887655 7788877654
No 266
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=71.86 E-value=81 Score=31.18 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=15.9
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK 114 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~ 114 (643)
++.+++.|+. -+.+..||+.+.+..
T Consensus 87 ~~~~l~s~s~---------D~~v~lwd~~~~~~~ 111 (343)
T 2xzm_R 87 ENCFAISSSW---------DKTLRLWDLRTGTTY 111 (343)
T ss_dssp STTEEEEEET---------TSEEEEEETTSSCEE
T ss_pred CCCEEEEEcC---------CCcEEEEECCCCcEE
Confidence 4556666662 246788898877543
No 267
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=71.23 E-value=24 Score=33.91 Aligned_cols=59 Identities=15% Similarity=0.318 Sum_probs=39.2
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccC----CCCC------CCceeEEEEE--CCEEEEEeeeecC
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK----GCPS------PRSGHRMVLY--KHKIIVFGGFYDT 201 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~----g~P~------~Rs~h~~~~~--~~~lyvfGG~~~~ 201 (643)
++++|+|-| +.+|+||..+++...- ++ +.|. +..-.++..+ ++++|+|-|
T Consensus 127 ~gk~yfFkG-------------~~yw~~d~~~~~~~~g-Pk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG---- 188 (225)
T 3oyo_A 127 GKEVYLFKG-------------NKYVRIAYDSKQLVGN-IRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG---- 188 (225)
T ss_dssp TTEEEEEET-------------TEEEEEETTTTEEEEE-EEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET----
T ss_pred CCcEEEEeC-------------CeEEEEECCCCeecCC-CcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC----
Confidence 689999988 4689999877665431 11 1121 2333445554 789999977
Q ss_pred CCceeeeccEEEEEcC
Q 006473 202 LREVRYYNDLYVFDLD 217 (643)
Q Consensus 202 ~~~~~~~~dv~~yD~~ 217 (643)
+..|+||..
T Consensus 189 -------~~ywr~d~~ 197 (225)
T 3oyo_A 189 -------QNYVRIDFT 197 (225)
T ss_dssp -------TEEEEEECC
T ss_pred -------CEEEEEeCC
Confidence 457899986
No 268
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=71.04 E-value=3.8 Score=39.75 Aligned_cols=61 Identities=13% Similarity=0.304 Sum_probs=37.9
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEE-----eccCCCCCC------CceeEEEEE--CCEEEEEeeeec
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQ-----LNLKGCPSP------RSGHRMVLY--KHKIIVFGGFYD 200 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~-----~~~~g~P~~------Rs~h~~~~~--~~~lyvfGG~~~ 200 (643)
++++|+|-| +.+|+||..+++-.. +. .+.|.. ..-.+++.+ ++++|+|-|
T Consensus 129 ~~k~yfFkG-------------~~yw~~d~~~~~~~~gyPk~i~-~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg--- 191 (227)
T 3lp9_A 129 GKEVYLFKG-------------DQYARIDYGSNSMVNKEIKSIS-SGYPCFRNTIFESGADAAFASHKTNEVYFFKD--- 191 (227)
T ss_dssp TTEEEEEET-------------TEEEEEETTTTEESSSSCEEHH-HHCGGGTTSGGGGCCSEEEECSSTTEEEEEET---
T ss_pred CCEEEEEEC-------------CEEEEEeCCCccccCCCCeEHH-HCCCCccccccCCCccEEEEcCCCceEEEEEC---
Confidence 689999988 468999987654211 11 112321 222344443 589999977
Q ss_pred CCCceeeeccEEEEEcCCC
Q 006473 201 TLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~ 219 (643)
+..|+||..+.
T Consensus 192 --------~~Ywr~d~~~~ 202 (227)
T 3lp9_A 192 --------DHYARVKVTPX 202 (227)
T ss_dssp --------TEEEEEECCSS
T ss_pred --------CEEEEEECCcc
Confidence 45788987665
No 269
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=70.92 E-value=96 Score=32.15 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=31.6
Q ss_pred ceEEEEeccCCCEEEEEcc-eecCCCCcee--ec-cEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEe
Q 006473 71 NCSLNINPLKETELILYGG-EFYNGNKTYV--YG-DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFG 141 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG-~~~~g~~~~~--~n-dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfG 141 (643)
.|++++.. ++.||.+|- ....++.... .+ ..-+--+....+..++.+ ..|+++.. ++.||.+|
T Consensus 137 ~hs~al~~--~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G------~~hs~alt~~G~v~~wG 204 (423)
T 3mvd_K 137 SHSACLLE--DGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG------ADHLVILTTAGKVFTVG 204 (423)
T ss_dssp SEEEEEET--TSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC------SSEEEEEETTSCEEEEE
T ss_pred CeEEEEeC--CCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC------CCeEEEEecCCeEEEee
Confidence 57777664 689999993 1111110000 00 000111222344555432 35666666 78999999
No 270
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=70.14 E-value=60 Score=33.17 Aligned_cols=147 Identities=15% Similarity=0.132 Sum_probs=76.3
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceee-ccEEEEECCCCc---EEEecCCCCCCCceeeEEEEE---CCEEEEEeCccC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVY-GDLYRYDVEKQE---WKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFT 145 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~-ndv~~yd~~~~~---W~~l~s~~~P~pRs~ha~~~~---~~~iyvfGG~~~ 145 (643)
-+++.+ ++.+||.+-. - +.||+++++... |-. ..++ +..|.+..-.++ ++.|++..+ .
T Consensus 141 DvavD~--~GnaYVt~s~---------~~~~I~rV~pdG~~~~~~~~-~~~~-~~~~~G~nGIv~~pdg~~Liv~~~-~- 205 (334)
T 2p9w_A 141 QSAQDR--DGNSYVAFAL---------GMPAIARVSADGKTVSTFAW-ESGN-GGQRPGYSGITFDPHSNKLIAFGG-P- 205 (334)
T ss_dssp EEEECT--TSCEEEEEEE---------SSCEEEEECTTSCCEEEEEE-CCCC-SSSCCSCSEEEEETTTTEEEEESS-S-
T ss_pred eeEECC--CCCEEEeCCC---------CCCeEEEEeCCCCEEeeeee-cCCC-cccccCcceEEEeCCCCEEEEEcC-C-
Confidence 344443 5788886652 2 569999998653 432 2322 344555554444 456777654 1
Q ss_pred CCCCCcceecCeEEEEECCCCcEEEeccC--CCCCCCce-eE--EEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLK--GCPSPRSG-HR--MVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~W~~~~~~--g~P~~Rs~-h~--~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
..+++||+.+.....++.. +....-.+ -. ..-++++++++.-. .+.++++-...+
T Consensus 206 ----------g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~---------~~~~~~l~S~Dg- 265 (334)
T 2p9w_A 206 ----------RALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR---------APYAISFRSWDN- 265 (334)
T ss_dssp ----------SSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE---------TTEEEEEECSST-
T ss_pred ----------CeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcC---------CCCEEEEECCCC-
Confidence 4589999875432122211 11101111 12 22258888666542 234455544445
Q ss_pred eEEeccCCCCCCCCC--ccceeE-EE----eCCEEEEEcCCCC
Q 006473 221 WQEIKPRFGSMWPSP--RSGFQF-FV----YQDEVFLYGGYSK 256 (643)
Q Consensus 221 W~~v~~~~~~~~P~~--R~~~s~-~~----~~~~iyv~GG~~~ 256 (643)
|....... ..|.+ -.+++. ++ .+++||++.++-.
T Consensus 266 W~sa~~~g--~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~f~ 306 (334)
T 2p9w_A 266 WKSANIKK--TKRSELQNSGFTAVADYYQGSEQGLYAVSAFFD 306 (334)
T ss_dssp TSEEEEEE--EECGGGGSSCEEEEEEEEETTEEEEEEEECCGG
T ss_pred cceeEEee--eecCccccCceeEEEEeccccCCeEEEEeeecC
Confidence 87765542 12221 123433 33 4789999987654
No 271
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=67.97 E-value=2.5 Score=43.87 Aligned_cols=52 Identities=10% Similarity=0.087 Sum_probs=24.3
Q ss_pred CeEEEEECCCCc--EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCC--ceE
Q 006473 156 KDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQ 222 (643)
Q Consensus 156 ~dv~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~--~W~ 222 (643)
..++.||..+++ |+.-. + + .. ...++.++.+|+.|+. -..|++||..+. .|.
T Consensus 19 g~v~a~d~~tG~~~W~~~~--~-~-~~--s~p~~~~g~~~v~~s~---------dg~l~a~d~~tG~~~w~ 74 (369)
T 2hz6_A 19 GSLHAVSKRTGSIKWTLKE--D-P-VL--QVPTHVEEPAFLPDPN---------DGSLYTLGSKNNEGLTK 74 (369)
T ss_dssp SEEEEEETTTCCEEEEEEC--C-C-SC--CCC-----CCEEECTT---------TCCEEEC-----CCSEE
T ss_pred CEEEEEECCCCCEEEEecC--C-C-ce--ecceEcCCCEEEEeCC---------CCEEEEEECCCCceeee
Confidence 458899988764 76543 1 1 11 1223346667776542 245888998654 455
No 272
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=67.96 E-value=94 Score=30.38 Aligned_cols=106 Identities=13% Similarity=0.123 Sum_probs=53.9
Q ss_pred eccEEEEECCCCcE-EEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCccee-cCeEEEEECCCCcEEEeccCCCC
Q 006473 100 YGDLYRYDVEKQEW-KVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHH-YKDFWMLDLKTNQWEQLNLKGCP 177 (643)
Q Consensus 100 ~ndv~~yd~~~~~W-~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~-~~dv~~yD~~t~~W~~~~~~g~P 177 (643)
...+|++++.+++. +.+.. + .....+...+.|++.+....... ... ...+|.+| +..+..+.. .
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~---~---~~~~~~~spdg~~~~~~~~~~~~---~~~~~~~l~~~d--~~~~~~l~~---~ 216 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK---P---RFSSGIWHRDKIVVNVPHREIIP---QYFKFWDIYIWE--DGKEEKMFE---K 216 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE---E---TTCEEEEETTEEEEEEECCCSSC---CSSCCEEEEEEE--TTEEEEEEE---E
T ss_pred cceEEEEECCCCeEEeeecC---C---CcccccCCCCeEEEEEecccccc---cccccccEEEeC--CCceEEecc---C
Confidence 35799999999887 66643 1 22223333333544443221100 001 35789999 777777654 1
Q ss_pred CCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 178 ~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
.......-+++.+++++...... ......||++| +..+..+.
T Consensus 217 ---~~~~~~spdg~~l~~~~~~~~~~-~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 217 ---VSFYAVDSDGERILLYGKPEKKY-MSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp ---ESEEEEEECSSCEEEEECCSSSC-CCSSCEEEEEC--SSCEEESS
T ss_pred ---cceeeECCCCCEEEEEEccccCC-ccccceEEEEC--CCceEecc
Confidence 11222234554444444322100 11245789998 66666554
No 273
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=66.75 E-value=89 Score=29.64 Aligned_cols=159 Identities=7% Similarity=0.030 Sum_probs=84.3
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~ 149 (643)
+.+++.+. ++.||+.-.. .+.+++|++....-+.+.... ..+- ..+++. ++.||+.....
T Consensus 82 ~~ia~d~~-~~~lyv~d~~---------~~~I~~~~~~g~~~~~~~~~~--~~~P-~~i~vd~~~g~lyv~~~~~----- 143 (267)
T 1npe_A 82 EGIALDHL-GRTIFWTDSQ---------LDRIEVAKMDGTQRRVLFDTG--LVNP-RGIVTDPVRGNLYWTDWNR----- 143 (267)
T ss_dssp EEEEEETT-TTEEEEEETT---------TTEEEEEETTSCSCEEEECSS--CSSE-EEEEEETTTTEEEEEECCS-----
T ss_pred cEEEEEec-CCeEEEEECC---------CCEEEEEEcCCCCEEEEEECC--CCCc-cEEEEeeCCCEEEEEECCC-----
Confidence 44555432 3567765431 246788888765433332221 1121 233333 68999975321
Q ss_pred CcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
....++++++....-..+...+ ...-+++++- +++||+.-.. .+.|++||+....-..+...
T Consensus 144 ----~~~~I~~~~~dg~~~~~~~~~~---~~~P~gia~d~~~~~lyv~d~~---------~~~I~~~~~~g~~~~~~~~~ 207 (267)
T 1npe_A 144 ----DNPKIETSHMDGTNRRILAQDN---LGLPNGLTFDAFSSQLCWVDAG---------THRAECLNPAQPGRRKVLEG 207 (267)
T ss_dssp ----SSCEEEEEETTSCCCEEEECTT---CSCEEEEEEETTTTEEEEEETT---------TTEEEEEETTEEEEEEEEEC
T ss_pred ----CCcEEEEEecCCCCcEEEEECC---CCCCcEEEEcCCCCEEEEEECC---------CCEEEEEecCCCceEEEecC
Confidence 0246888887654433332211 1222344443 5689886431 46789999875432222111
Q ss_pred CCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 006473 228 FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (643)
. ..| +++++.++.||+.-.... .++++|+.+.+-...
T Consensus 208 --~--~~P---~gi~~d~~~lyva~~~~~----------------~v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 208 --L--QYP---FAVTSYGKNLYYTDWKTN----------------SVIAMDLAISKEMDT 244 (267)
T ss_dssp --C--CSE---EEEEEETTEEEEEETTTT----------------EEEEEETTTTEEEEE
T ss_pred --C--CCc---eEEEEeCCEEEEEECCCC----------------eEEEEeCCCCCceEE
Confidence 1 222 345566889998754332 388999987765443
No 274
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=65.84 E-value=1.9e+02 Score=33.11 Aligned_cols=177 Identities=8% Similarity=0.047 Sum_probs=94.8
Q ss_pred ccEEEEECCCC----cEEEecCCCCCCCceeeEEEE--ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccC
Q 006473 101 GDLYRYDVEKQ----EWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK 174 (643)
Q Consensus 101 ndv~~yd~~~~----~W~~l~s~~~P~pRs~ha~~~--~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~ 174 (643)
+.|+++++... ....+.......| .++++ .++.||+.-.. .+.|+++++....-..+...
T Consensus 446 ~~I~~~~l~g~~~~~~~~~vi~~~l~~P---~GLAvD~~~~~LY~tD~~-----------~~~I~v~~ldG~~~~~l~~~ 511 (791)
T 3m0c_C 446 RMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDSV-----------LGTVSVADTKGVKRKTLFRE 511 (791)
T ss_dssp TEEEEEEC--------CEEEECSSCSCC---CEEEEETTTTEEEEEETT-----------TTEEEEEETTSSSEEEEEEC
T ss_pred eeEEEEeccCCCCCcceeEEEecCCCCc---ceeeeeecCCcEEEEecC-----------CCeEEEEeCCCCeEEEEEeC
Confidence 45777777652 2333322111112 22333 36799998532 35789999987665555432
Q ss_pred CCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEE
Q 006473 175 GCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFL 250 (643)
Q Consensus 175 g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv 250 (643)
.+..| .++++. +++||+.-- +. ...|+++++....-..+... .+..|+ ++++. ++.||+
T Consensus 512 ~l~~P---~gIaVDp~~g~LYwtD~----g~----~~~I~~~~~dG~~~~~lv~~---~l~~P~---GLavD~~~~~LYw 574 (791)
T 3m0c_C 512 NGSKP---RAIVVDPVHGFMYWTDW----GT----PAKIKKGGLNGVDIYSLVTE---NIQWPN---GITLDLLSGRLYW 574 (791)
T ss_dssp TTCCE---EEEEEETTTTEEEEEEC----SS----SCEEEEEETTSCCEEEEECS---SCSCEE---EEEEETTTTEEEE
T ss_pred CCCCc---ceEEEecCCCCEEEecC----CC----CCeEEEEecCCCceEEEEeC---CCCCce---EEEEecCCCeEEE
Confidence 22222 234443 578998631 11 25688888875443333321 111121 23333 789999
Q ss_pred EcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe-ccCCCCCCCceeeEEEEECCeEEEeccccccccCcccccccc
Q 006473 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV-KKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLF 329 (643)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l-~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~ 329 (643)
.-... ..|+++++....-..+ ...+..+ ..+++++.+++||+.-..
T Consensus 575 aD~~~----------------~~I~~~d~dG~~~~~v~~~~~~l~---~P~glav~~~~lYwtD~~-------------- 621 (791)
T 3m0c_C 575 VDSKL----------------HSISSIDVNGGNRKTILEDEKRLA---HPFSLAVFEDKVFWTDII-------------- 621 (791)
T ss_dssp EETTT----------------TEEEEEETTSCSCEEEEECTTTTS---SEEEEEEETTEEEEEETT--------------
T ss_pred EeCCC----------------CcEEEEecCCCceEEEecCCCccC---CCCEEEEeCCEEEEEECC--------------
Confidence 85332 3488888765433333 3222222 345778889999987643
Q ss_pred CCcEEEEECCCC
Q 006473 330 LNELYGFQLDNH 341 (643)
Q Consensus 330 ~ndl~~yd~~t~ 341 (643)
.+.|+++|..++
T Consensus 622 ~~~I~~~dk~tG 633 (791)
T 3m0c_C 622 NEAIFSANRLTG 633 (791)
T ss_dssp TTEEEEEETTTC
T ss_pred CCEEEEEeCCCC
Confidence 356888886654
No 275
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=65.53 E-value=1.4e+02 Score=31.54 Aligned_cols=169 Identities=7% Similarity=-0.005 Sum_probs=78.4
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
.+..+|.....-..+.... ..-.+++.. ++..++.|+.. ..+.+||.....-..+.. . .
T Consensus 326 ~i~~w~~~~~~~~~~~~~~----~~v~~~~~s~~g~~l~~~~~d-----------g~v~~~~~~~~~~~~~~~---~--~ 385 (577)
T 2ymu_A 326 TVKLWNRNGQHLQTLTGHS----SSVWGVAFSPDGQTIASASDD-----------KTVKLWNRNGQLLQTLTG---H--S 385 (577)
T ss_dssp CEEEEETTSCEEEEECCCS----SCEEEEEECTTSSEEEEEETT-----------SEEEEEETTCCEEEEEEC---C--S
T ss_pred eEEEEeCCCCeeEEEeCCC----CCEEEEEECCCCCEEEEEeCC-----------CEEEEEcCCCCEEEEecC---C--C
Confidence 4566777665544443211 111222222 45566666542 346677765444333322 1 1
Q ss_pred ceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCC
Q 006473 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (643)
Q Consensus 181 s~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~ 257 (643)
..-.++.+ ++..++.|+.+ ..+.+||.....-..+... ..+ -.+++.. ++.+++.|+.++.
T Consensus 386 ~~v~~~~~s~dg~~l~~~~~d---------~~v~~~~~~~~~~~~~~~~-----~~~--v~~~~~s~d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 386 SSVRGVAFSPDGQTIASASDD---------KTVKLWNRNGQLLQTLTGH-----SSS--VWGVAFSPDDQTIASASDDKT 449 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETT---------SEEEEECTTCCEEEEEECC-----SSC--EEEEEECTTSSEEEEEETTSE
T ss_pred CCeEEEEECCCCCEEEEEeCC---------CEEEEEeCCCCEEEEecCC-----CCC--eEEEEECCCCCEEEEEcCCCE
Confidence 11122223 45566666642 3466777543322222211 111 1122222 5667777766543
Q ss_pred CCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEE
Q 006473 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGF 336 (643)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~y 336 (643)
+.+||.....-..+... ...-.++++. ++++++.|+.. ..|.+|
T Consensus 450 ----------------v~~w~~~~~~~~~~~~~-----~~~v~~~~~spd~~~las~~~d--------------~~i~iw 494 (577)
T 2ymu_A 450 ----------------VKLWNRNGQLLQTLTGH-----SSSVRGVAFSPDGQTIASASDD--------------KTVKLW 494 (577)
T ss_dssp ----------------EEEEETTSCEEEEEECC-----SSCEEEEEECTTSCEEEEEETT--------------SEEEEE
T ss_pred ----------------EEEEECCCCEEEEEcCC-----CCCEEEEEEcCCCCEEEEEeCC--------------CEEEEE
Confidence 66777655444433321 1122233443 57777777643 347788
Q ss_pred ECCCC
Q 006473 337 QLDNH 341 (643)
Q Consensus 337 d~~t~ 341 (643)
|....
T Consensus 495 ~~~~~ 499 (577)
T 2ymu_A 495 NRNGQ 499 (577)
T ss_dssp ETTSC
T ss_pred cCCCC
Confidence 86543
No 276
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=65.38 E-value=41 Score=37.45 Aligned_cols=81 Identities=9% Similarity=0.126 Sum_probs=41.1
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcE---EEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW---KVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQ 149 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W---~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~ 149 (643)
+....| +++.++|+......-.......++++|+.+++. ..+. ......+..=+++.++|+.
T Consensus 64 ~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~------~~~~~~~~SPDG~~la~~~------- 128 (719)
T 1z68_A 64 NYGLSP--DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP------RPIQYLCWSPVGSKLAYVY------- 128 (719)
T ss_dssp EEEECT--TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC------SSBCCEEECSSTTCEEEEE-------
T ss_pred eEEECC--CCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC------cccccceECCCCCEEEEEE-------
Confidence 444555 566666665311000001235899999998876 3331 1111111111444444442
Q ss_pred CcceecCeEEEEECCCCcEEEecc
Q 006473 150 ERFHHYKDFWMLDLKTNQWEQLNL 173 (643)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~ 173 (643)
-++++++|+.++.-..+..
T Consensus 129 -----~~~i~~~~~~~g~~~~l~~ 147 (719)
T 1z68_A 129 -----QNNIYLKQRPGDPPFQITF 147 (719)
T ss_dssp -----TTEEEEESSTTSCCEECCC
T ss_pred -----CCeEEEEeCCCCCcEEEec
Confidence 1478888888877666543
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=65.28 E-value=1.1e+02 Score=34.76 Aligned_cols=98 Identities=11% Similarity=0.158 Sum_probs=53.7
Q ss_pred cCeEEEEECCCC--cE--EEeccCCCCCCCceeEEE-EECCEEEEEeeeecCCCceeeeccEEEEEcCC-CceEE-eccC
Q 006473 155 YKDFWMLDLKTN--QW--EQLNLKGCPSPRSGHRMV-LYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQE-IKPR 227 (643)
Q Consensus 155 ~~dv~~yD~~t~--~W--~~~~~~g~P~~Rs~h~~~-~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t-~~W~~-v~~~ 227 (643)
.+++|++|+.+. .+ ..+.... ..+. +... ..++.||+..-.... -...|+.+|+.+ ..|.. +-+.
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~--~s~~~~~g~~l~~~t~~~~a-----~~~~L~~~d~~~~~~~~~~li~~ 365 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPRE-KGVR--YDVQMHGTSHLVILTNEGGA-----VNHKLLIAPRGQPSDWSHVLVDH 365 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCC-TTCC--EEEEEETTTEEEEEECTTTC-----TTCEEEEEETTSTTCCCCEEECC
T ss_pred CceEEEEECCCCCCCceeEEeecCC-CCce--EEEeeeeCCEEEEEeCCCCC-----CCcEEEEEcCCCcccceeeEECC
Confidence 368999999875 46 5554311 1111 1122 237788887543201 135789999876 57876 4332
Q ss_pred CCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeC
Q 006473 228 FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (643)
.....-..+...++.||+..-..+ ...++++++
T Consensus 366 -----~~~~~l~~~~~~~~~lv~~~~~~g--------------~~~l~~~dl 398 (751)
T 2xe4_A 366 -----SEDVFMESIAVRSNYLVVAGRRAG--------------LTRIWTMMA 398 (751)
T ss_dssp -----CSSEEEEEEEECSSEEEEEEEETT--------------EEEEEEEEC
T ss_pred -----CCCcEEEEEEEECCEEEEEEEeCC--------------EEEEEEEec
Confidence 111122233444777777654332 356888886
No 278
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=65.18 E-value=1.1e+02 Score=29.99 Aligned_cols=52 Identities=19% Similarity=0.163 Sum_probs=27.2
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
..+..||+.+.+-...-. + .. ..-.++.+ ++.+++.||.+ ..+.+||+.+.+
T Consensus 176 ~~i~~wd~~~~~~~~~~~-~-h~--~~v~~~~~sp~g~~l~s~~~d---------g~i~iwd~~~~~ 229 (319)
T 3frx_A 176 KMVKAWNLNQFQIEADFI-G-HN--SNINTLTASPDGTLIASAGKD---------GEIMLWNLAAKK 229 (319)
T ss_dssp SCEEEEETTTTEEEEEEC-C-CC--SCEEEEEECTTSSEEEEEETT---------CEEEEEETTTTE
T ss_pred CEEEEEECCcchhheeec-C-CC--CcEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCc
Confidence 347788887655432211 1 11 11122222 56677777742 357888887654
No 279
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=64.87 E-value=44 Score=37.74 Aligned_cols=200 Identities=9% Similarity=0.035 Sum_probs=98.8
Q ss_pred CceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCC----CcEEEecCCCCCCCceeeEEEE--ECCEEEEEeCc
Q 006473 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK----QEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGE 143 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~----~~W~~l~s~~~P~pRs~ha~~~--~~~~iyvfGG~ 143 (643)
..+.+++.+. ++.||+.-- ..+.|+++++.. ..-..+.......| +.+++ .++.||+.-..
T Consensus 407 ~p~gla~d~~-~~~Ly~sD~---------~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P---~glavD~~~g~LY~tD~~ 473 (699)
T 1n7d_A 407 NVVALDTEVA-SNRIYWSDL---------SQRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDSV 473 (699)
T ss_dssp TCCCCEEETT-TTEEEECCT---------TTTSBEEEESCCCCC-CCCCCBCCSCC--C---CCEECCCSSSBCEECCTT
T ss_pred ceEEEccccc-cCeEEEEec---------CCCeEEEEecCCCCCCcceEEEEeCCCCCc---ceEEEEeeCCcEEEEecc
Confidence 3344555432 467776533 124678888875 11111111111111 22332 36788886321
Q ss_pred cCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEE--ECCEEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 144 FTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 144 ~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~--~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
.+.|+++++....-..+...++..|+ .+++ .+++||+.-- . ....|+++++....-
T Consensus 474 -----------~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~----~----~~~~I~~~~~dG~~~ 531 (699)
T 1n7d_A 474 -----------LGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDW----G----TPAKIKKGGLNGVDI 531 (699)
T ss_dssp -----------TSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCC----S----SSCCEEBCCSSSCCC
T ss_pred -----------CCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEccc----C----CCCeEEEEeCCCCCe
Confidence 25688898877655544332222222 2333 2567776431 1 024677777654332
Q ss_pred EEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCcee
Q 006473 222 QEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (643)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g 299 (643)
..+... .+..|+ ++++. ++.||+.-... ..|+++++....-..+.... ......
T Consensus 532 ~~l~~~---~l~~Pn---Glavd~~~~~LY~aD~~~----------------~~I~~~d~dG~~~~~~~~~~--~~~~~P 587 (699)
T 1n7d_A 532 YSLVTE---NIQWPN---GITLDLLSGRLYWVDSKL----------------HSISSIDVNGGNRKTILEDE--KRLAHP 587 (699)
T ss_dssp CEESCS---SCSSCC---CEEECTTTCCEEEEETTT----------------TEEEEECSSSSCCEEECCCS--SSCSSC
T ss_pred eEEEeC---CCCCcc---EEEEeccCCEEEEEecCC----------------CeEEEEccCCCceEEEEecC--CcCCCc
Confidence 222211 011111 23332 67888875432 23788887654333332210 111233
Q ss_pred eEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 300 ~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
+++++..++||+.-.. .+.|+++|+.+.+
T Consensus 588 ~glavd~~~lywtd~~--------------~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 588 FSLAVFEDKVFWTDII--------------NEAIFSANRLTGS 616 (699)
T ss_dssp CCCEEETTEEEEECST--------------TTCEEEEETTTEE
T ss_pred eEeEEECCEEEEEeCC--------------CCeEEEEEccCCC
Confidence 4667788888887632 3568999987654
No 280
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=64.53 E-value=1.6e+02 Score=33.24 Aligned_cols=98 Identities=10% Similarity=0.101 Sum_probs=55.7
Q ss_pred eccEEEEECCCC--cE--EEecCCCCCCCceeeEEE-EECCEEEEEeCccCCCCCCcceecCeEEEEECCC-CcEEE-ec
Q 006473 100 YGDLYRYDVEKQ--EW--KVISSPNSPPPRSAHQAV-SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT-NQWEQ-LN 172 (643)
Q Consensus 100 ~ndv~~yd~~~~--~W--~~l~s~~~P~pRs~ha~~-~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t-~~W~~-~~ 172 (643)
.+++|.+|+.+. .+ +.+.... ..+. ++.. ..++.||+..-..... ...++++++.+ ..|+. +-
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~--~s~~~~~g~~l~~~t~~~~a~-------~~~L~~~d~~~~~~~~~~li 363 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPRE-KGVR--YDVQMHGTSHLVILTNEGGAV-------NHKLLIAPRGQPSDWSHVLV 363 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCC-TTCC--EEEEEETTTEEEEEECTTTCT-------TCEEEEEETTSTTCCCCEEE
T ss_pred CceEEEEECCCCCCCceeEEeecCC-CCce--EEEeeeeCCEEEEEeCCCCCC-------CcEEEEEcCCCcccceeeEE
Confidence 468999999875 56 6665422 1111 2222 2378888886543111 24789999876 68876 53
Q ss_pred cCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEc
Q 006473 173 LKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDL 216 (643)
Q Consensus 173 ~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~ 216 (643)
+. .....-......++.||+..-..+ ...++++++
T Consensus 364 ~~--~~~~~l~~~~~~~~~lv~~~~~~g-------~~~l~~~dl 398 (751)
T 2xe4_A 364 DH--SEDVFMESIAVRSNYLVVAGRRAG-------LTRIWTMMA 398 (751)
T ss_dssp CC--CSSEEEEEEEECSSEEEEEEEETT-------EEEEEEEEC
T ss_pred CC--CCCcEEEEEEEECCEEEEEEEeCC-------EEEEEEEec
Confidence 31 111121233344777776654322 567889986
No 281
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=62.73 E-value=1.2e+02 Score=29.82 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=31.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
++.+++.|+.. ..+.+||+.+.+....-. + ... .-.+++.. ++..++.||.+ ..+.
T Consensus 87 ~~~~l~s~s~D-----------~~v~lwd~~~~~~~~~~~-~-h~~-~v~~v~~sp~~~~l~s~~~d---------~~i~ 143 (343)
T 2xzm_R 87 ENCFAISSSWD-----------KTLRLWDLRTGTTYKRFV-G-HQS-EVYSVAFSPDNRQILSAGAE---------REIK 143 (343)
T ss_dssp STTEEEEEETT-----------SEEEEEETTSSCEEEEEE-C-CCS-CEEEEEECSSTTEEEEEETT---------SCEE
T ss_pred CCCEEEEEcCC-----------CcEEEEECCCCcEEEEEc-C-CCC-cEEEEEECCCCCEEEEEcCC---------CEEE
Confidence 45566666642 457788988776432211 1 111 11122222 45556666643 3567
Q ss_pred EEEcCC
Q 006473 213 VFDLDQ 218 (643)
Q Consensus 213 ~yD~~t 218 (643)
+||+..
T Consensus 144 ~wd~~~ 149 (343)
T 2xzm_R 144 LWNILG 149 (343)
T ss_dssp EEESSS
T ss_pred EEeccC
Confidence 777753
No 282
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=61.77 E-value=1.9e+02 Score=31.79 Aligned_cols=112 Identities=7% Similarity=-0.036 Sum_probs=52.4
Q ss_pred ccEEEEECCCCc---EEEecCCC-CCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEE----CCCCcEEE
Q 006473 101 GDLYRYDVEKQE---WKVISSPN-SPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLD----LKTNQWEQ 170 (643)
Q Consensus 101 ndv~~yd~~~~~---W~~l~s~~-~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD----~~t~~W~~ 170 (643)
..++++|+.+.+ |..+..+. ..........+.+ ++++++.... ... ....+|++| +.++++..
T Consensus 224 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~-~~~------~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 224 VRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK-RVQ------NVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp EEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE-SST------TEEEEEEEEECSSSSSEECCG
T ss_pred eEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec-ccc------CeEEEEEEcccCCCCCCceEE
Confidence 378889988875 23443210 0001111222333 5666555221 111 125799999 87777655
Q ss_pred ecc---CCCCCCCc--eeEEEEE--C-CEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 171 LNL---KGCPSPRS--GHRMVLY--K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 171 ~~~---~g~P~~Rs--~h~~~~~--~-~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
+.. .+...... .+....+ + ..|++.....+ + ...||.+|+.+.....+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-g-----~~~l~~~~~~~~~~~~lt 353 (719)
T 1z68_A 297 TQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD-G-----YKHIHYIKDTVENAIQIT 353 (719)
T ss_dssp GGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT-S-----CEEEEEESSCSTTCEECS
T ss_pred EEecccccCCceEccccCCccEECCCCCeEEEEEEccC-C-----ceEEEEEECCCCceEecc
Confidence 441 11111111 0112223 3 34554333211 1 356999999887766554
No 283
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=61.23 E-value=1.9e+02 Score=31.43 Aligned_cols=181 Identities=7% Similarity=0.039 Sum_probs=88.8
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
+.+..||..+.+....-.. ....-.++.+ ++.+++.||.. ..+.+||..+......-... ..
T Consensus 170 ~~v~lwd~~~~~~~~~l~~----H~~~V~~v~fspdg~~las~s~D-----------~~i~lwd~~~g~~~~~~~~~-~~ 233 (611)
T 1nr0_A 170 NTVAIFEGPPFKFKSTFGE----HTKFVHSVRYNPDGSLFASTGGD-----------GTIVLYNGVDGTKTGVFEDD-SL 233 (611)
T ss_dssp SCEEEEETTTBEEEEEECC----CSSCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCCEEEECBCT-TS
T ss_pred CeEEEEECCCCeEeeeecc----ccCceEEEEECCCCCEEEEEECC-----------CcEEEEECCCCcEeeeeccc-cc
Confidence 3567778766544322111 1111222333 56677777753 35778888777654332110 00
Q ss_pred CCcee----EEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEc
Q 006473 179 PRSGH----RMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (643)
Q Consensus 179 ~Rs~h----~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~G 252 (643)
...+| .++.+ ++.+++.||.+ ..+.+||+.+.+....-... .........+...+..++.+
T Consensus 234 ~~~~h~~~V~~v~~spdg~~l~s~s~D---------~~v~lWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~s~ 300 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPDGTKIASASAD---------KTIKIWNVATLKVEKTIPVG----TRIEDQQLGIIWTKQALVSI 300 (611)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEETT---------SEEEEEETTTTEEEEEEECC----SSGGGCEEEEEECSSCEEEE
T ss_pred cccccCCCEEEEEECCCCCEEEEEeCC---------CeEEEEeCCCCceeeeecCC----CCccceeEEEEEcCCEEEEE
Confidence 01122 12223 55666667642 45788898877654432221 11111112233355566666
Q ss_pred CCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCC
Q 006473 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLN 331 (643)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~n 331 (643)
+.++. +..+++.+..-..... |. ...-.++++. +++.++.|+.. +
T Consensus 301 s~d~~----------------i~~~~~~~~~~~~~~~-gh---~~~v~~l~~spdg~~l~s~s~D--------------~ 346 (611)
T 1nr0_A 301 SANGF----------------INFVNPELGSIDQVRY-GH---NKAITALSSSADGKTLFSADAE--------------G 346 (611)
T ss_dssp ETTCC----------------EEEEETTTTEEEEEEC-CC---SSCEEEEEECTTSSEEEEEETT--------------S
T ss_pred eCCCc----------------EEEEeCCCCCcceEEc-CC---CCCEEEEEEeCCCCEEEEEeCC--------------C
Confidence 65544 5677776654322211 11 1112233333 56777777653 3
Q ss_pred cEEEEECCCCcEE
Q 006473 332 ELYGFQLDNHRWY 344 (643)
Q Consensus 332 dl~~yd~~t~~W~ 344 (643)
.|.+||+.+....
T Consensus 347 ~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 347 HINSWDISTGISN 359 (611)
T ss_dssp CEEEEETTTCCEE
T ss_pred cEEEEECCCCcee
Confidence 4888888876543
No 284
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=60.79 E-value=16 Score=35.24 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=15.8
Q ss_pred CCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 189 ~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
++++|+|-| +..|+||..++
T Consensus 129 ~~k~yfFkG-----------~~yw~~d~~~~ 148 (227)
T 3lp9_A 129 GKEVYLFKG-----------DQYARIDYGSN 148 (227)
T ss_dssp TTEEEEEET-----------TEEEEEETTTT
T ss_pred CCEEEEEEC-----------CEEEEEeCCCc
Confidence 589999987 45899997654
No 285
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=56.62 E-value=1.6e+02 Score=29.28 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=11.4
Q ss_pred ccEEEEECC-CCcEEEe
Q 006473 101 GDLYRYDVE-KQEWKVI 116 (643)
Q Consensus 101 ndv~~yd~~-~~~W~~l 116 (643)
+.+++|++. +++...+
T Consensus 167 ~~v~~~~~~~~g~~~~~ 183 (365)
T 1jof_A 167 NKLWTHRKLASGEVELV 183 (365)
T ss_dssp TEEEEEEECTTSCEEEE
T ss_pred CEEEEEEECCCCCEEEe
Confidence 478889988 6766543
No 286
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=55.97 E-value=1.7e+02 Score=29.37 Aligned_cols=176 Identities=10% Similarity=-0.001 Sum_probs=95.7
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEE--ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~--~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
+.|+++++.......+.......| ..+++ .++.||+.-.. .+.++++++....-..+...++..
T Consensus 95 ~~I~r~~~~g~~~~~~~~~~~~~p---~glavd~~~g~ly~~d~~-----------~~~I~~~~~dG~~~~~l~~~~l~~ 160 (349)
T 3v64_C 95 DRILRANLNGSNVEEVVSTGLESP---GGLAVDWVHDKLYWTDSG-----------TSRIEVANLDGAHRKVLLWQSLEK 160 (349)
T ss_dssp TEEEEEETTSCSCEEEECSSCSCC---CEEEEETTTTEEEEEETT-----------TTEEEEEETTSCSCEEEECTTCSC
T ss_pred CceEEEecCCCCceEEEeCCCCCc---cEEEEecCCCeEEEEcCC-----------CCeEEEEcCCCCceEEEEeCCCCC
Confidence 468888888776555533221122 23333 37899987542 256888998765544443222222
Q ss_pred CCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEE--eCCEEEEEcCC
Q 006473 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV--YQDEVFLYGGY 254 (643)
Q Consensus 179 ~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~--~~~~iyv~GG~ 254 (643)
| ..+++. ++.||+.--.. ...|+++++....-..+... . ...| .++++ .++.||+.-..
T Consensus 161 P---~~iavdp~~g~ly~td~~~--------~~~I~r~~~dG~~~~~~~~~-~--~~~P---nGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 161 P---RAIALHPMEGTIYWTDWGN--------TPRIEASSMDGSGRRIIADT-H--LFWP---NGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp E---EEEEEETTTTEEEEEECSS--------SCEEEEEETTSCSCEESCCS-S--CSCE---EEEEEETTTTEEEEEETT
T ss_pred c---ceEEEecCcCeEEEeccCC--------CCEEEEEeCCCCCcEEEEEC-C--CCCc---ceEEEeCCCCEEEEEECC
Confidence 2 234444 67888763210 25789998875433333211 0 0111 23333 37889987543
Q ss_pred CCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEE
Q 006473 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (643)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (643)
. ..|+++++....-..+...+ ...-+++++.++.||+.-.. .+.|+
T Consensus 224 ~----------------~~I~~~~~dG~~~~~~~~~~----~~~P~giav~~~~ly~td~~--------------~~~V~ 269 (349)
T 3v64_C 224 H----------------HVIERANLDGSHRKAVISQG----LPHPFAITVFEDSLYWTDWH--------------TKSIN 269 (349)
T ss_dssp T----------------TEEEEEETTSCSCEEEECSS----CSSEEEEEEETTEEEEEETT--------------TTEEE
T ss_pred C----------------CEEEEEeCCCCceEEEEeCC----CCCceEEEEECCEEEEecCC--------------CCeEE
Confidence 2 34788887653323322211 11235666788999987542 35688
Q ss_pred EEECCCC
Q 006473 335 GFQLDNH 341 (643)
Q Consensus 335 ~yd~~t~ 341 (643)
++|..+.
T Consensus 270 ~~~~~~G 276 (349)
T 3v64_C 270 SANKFTG 276 (349)
T ss_dssp EEETTTC
T ss_pred EEEccCC
Confidence 8885444
No 287
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=55.38 E-value=48 Score=31.67 Aligned_cols=61 Identities=28% Similarity=0.451 Sum_probs=35.2
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC-cE-----EEecC-CCCCCC--ce-eeEEEEE--CCEEEEEeCccCCCC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EW-----KVISS-PNSPPP--RS-AHQAVSW--KNYLYIFGGEFTSPN 148 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~-~W-----~~l~s-~~~P~p--Rs-~ha~~~~--~~~iyvfGG~~~~~~ 148 (643)
++++|+|=| +.+|+|+..++ +- +.|.. ...|.. .. --++... ++++|+|-|
T Consensus 72 ~~~~yfFkG-----------~~yw~~~~~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG------ 134 (219)
T 1hxn_A 72 EDKLYLIQD-----------TKVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG------ 134 (219)
T ss_dssp TTEEEEEET-----------TEEEEEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET------
T ss_pred CCcEEEecC-----------CEEEEEeCCCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC------
Confidence 589999987 36788986532 11 11211 112222 11 2233333 589999988
Q ss_pred CCcceecCeEEEEECCC
Q 006473 149 QERFHHYKDFWMLDLKT 165 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t 165 (643)
+..|+||..+
T Consensus 135 -------~~ywr~d~~~ 144 (219)
T 1hxn_A 135 -------RRLWWLDLKS 144 (219)
T ss_dssp -------TEEEEEEGGG
T ss_pred -------CEEEEEeCCC
Confidence 4579999764
No 288
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=54.01 E-value=2.3e+02 Score=30.21 Aligned_cols=123 Identities=15% Similarity=0.053 Sum_probs=56.9
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC----cEEEecCC-CC----CCCceeeEEEEECCEEEEEeCccCCCCCCc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ----EWKVISSP-NS----PPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~----~W~~l~s~-~~----P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~ 151 (643)
..+|||-|. ..+.+|++|..++ +-.....+ .. -..+-++..|.-++ |||..--.....
T Consensus 95 r~~l~v~~l---------~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~--- 161 (462)
T 2ece_A 95 RRFLIVPGL---------RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGE--- 161 (462)
T ss_dssp SCEEEEEBT---------TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSC---
T ss_pred CCEEEEccC---------CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCC---
Confidence 455666555 2468999998866 33332210 00 01122223333355 887432111111
Q ss_pred ceecCeEEEEECCCCcEEE-eccCCCCCCCceeEEEE-E-CCEEEEEe---------eeecCCCceeeeccEEEEEcCCC
Q 006473 152 FHHYKDFWMLDLKTNQWEQ-LNLKGCPSPRSGHRMVL-Y-KHKIIVFG---------GFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~-~~~~g~P~~Rs~h~~~~-~-~~~lyvfG---------G~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
.-..|.++|..|.+-.. ++..+.|..... ..-+ . .+.+|+-- |+........+.+.|.+||+.+.
T Consensus 162 --~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Y-d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 162 --GPGGILMLDHYSFEPLGKWEIDRGDQYLAY-DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp --SCCEEEEECTTTCCEEEECCSBCTTCCCCC-CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred --CCCeEEEEECCCCeEEEEEccCCCCccccc-eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence 13679999999876332 222112221111 1111 1 34444431 22211100135789999999875
No 289
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=53.73 E-value=2.4e+02 Score=30.46 Aligned_cols=155 Identities=10% Similarity=0.046 Sum_probs=76.6
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEec-CCCCC-CCc-eeeEEEEE--CCEEEEEeCccCCCCCCcceec
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SPNSP-PPR-SAHQAVSW--KNYLYIFGGEFTSPNQERFHHY 155 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~-s~~~P-~pR-s~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~ 155 (643)
++.+++.||. -+.+..||+.+++....- ..... ... ..-..+.+ ++.+++.||..
T Consensus 201 dg~~las~s~---------D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D----------- 260 (611)
T 1nr0_A 201 DGSLFASTGG---------DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD----------- 260 (611)
T ss_dssp TSSEEEEEET---------TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT-----------
T ss_pred CCCEEEEEEC---------CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC-----------
Confidence 4556666662 135778888776544321 11000 011 11122233 56666777642
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (643)
..+.++|+.+.+....-..+ .........+.+.+..++.++.+ ..+..||+.+..-... .. ...
T Consensus 261 ~~v~lWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~s~d---------~~i~~~~~~~~~~~~~--~~----gh~ 324 (611)
T 1nr0_A 261 KTIKIWNVATLKVEKTIPVG-TRIEDQQLGIIWTKQALVSISAN---------GFINFVNPELGSIDQV--RY----GHN 324 (611)
T ss_dssp SEEEEEETTTTEEEEEEECC-SSGGGCEEEEEECSSCEEEEETT---------CCEEEEETTTTEEEEE--EC----CCS
T ss_pred CeEEEEeCCCCceeeeecCC-CCccceeEEEEEcCCEEEEEeCC---------CcEEEEeCCCCCcceE--Ec----CCC
Confidence 45788999887765432211 11112223344455556666542 3466778766542211 10 011
Q ss_pred ccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 006473 236 RSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 236 R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (643)
..-.+++.. ++..++.|+.++. +.++|+.+.....+
T Consensus 325 ~~v~~l~~spdg~~l~s~s~D~~----------------v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 325 KAITALSSSADGKTLFSADAEGH----------------INSWDISTGISNRV 361 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTCCEEEC
T ss_pred CCEEEEEEeCCCCEEEEEeCCCc----------------EEEEECCCCceeee
Confidence 111122222 6677777877665 77888877665443
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=53.72 E-value=1.9e+02 Score=29.32 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=76.1
Q ss_pred ccEEEEECCCCcEEEecCCC----CCCCceeeEEEE----ECCEEEEEe---CccCCCCCCcceecCeEEEEECC---CC
Q 006473 101 GDLYRYDVEKQEWKVISSPN----SPPPRSAHQAVS----WKNYLYIFG---GEFTSPNQERFHHYKDFWMLDLK---TN 166 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~----~P~pRs~ha~~~----~~~~iyvfG---G~~~~~~~~~~~~~~dv~~yD~~---t~ 166 (643)
..|++|++..+.-..+..+. ......-..+.+ -.++|+|+- .-+....+ ...-.+.+.+||+. ++
T Consensus 35 g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~-~~~g~~~v~~~Dl~~~~tg 113 (334)
T 2p9w_A 35 GRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ-SSHGASSFHSFNLPLSENS 113 (334)
T ss_dssp TEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC-CSSSCCEEEEEESSCCTTC
T ss_pred CEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc-ccCCCCEEEEEcCCcCCCC
Confidence 47889999866544442221 011122234444 147888862 11111111 01124679999987 44
Q ss_pred --cEEEeccCCCCC------CCc-eeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc---eEEeccCCCCCC
Q 006473 167 --QWEQLNLKGCPS------PRS-GHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---WQEIKPRFGSMW 232 (643)
Q Consensus 167 --~W~~~~~~g~P~------~Rs-~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~---W~~v~~~~~~~~ 232 (643)
.|..--...... .+. +..-+.+ .+.+||.+.+. ...|+++++.... |..-.+.
T Consensus 114 ~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~--------~~~I~rV~pdG~~~~~~~~~~~~----- 180 (334)
T 2p9w_A 114 KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG--------MPAIARVSADGKTVSTFAWESGN----- 180 (334)
T ss_dssp CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES--------SCEEEEECTTSCCEEEEEECCCC-----
T ss_pred CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC--------CCeEEEEeCCCCEEeeeeecCCC-----
Confidence 454321100000 022 2222333 67999987642 1569999987542 4322211
Q ss_pred CCCccceeE-EEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe
Q 006473 233 PSPRSGFQF-FVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (643)
Q Consensus 233 P~~R~~~s~-~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (643)
+..+.+..- ++. +..|++..+ .+. +++||+.+..
T Consensus 181 ~~~~~G~nGIv~~pdg~~Liv~~~-~g~----------------L~~fD~~~pv 217 (334)
T 2p9w_A 181 GGQRPGYSGITFDPHSNKLIAFGG-PRA----------------LTAFDVSKPY 217 (334)
T ss_dssp SSSCCSCSEEEEETTTTEEEEESS-SSS----------------EEEEECSSSS
T ss_pred cccccCcceEEEeCCCCEEEEEcC-CCe----------------EEEEcCCCCc
Confidence 233444433 444 557777766 544 8899987543
No 291
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=53.65 E-value=1.7e+02 Score=28.74 Aligned_cols=200 Identities=8% Similarity=0.015 Sum_probs=105.1
Q ss_pred CceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCC----CcEEEecCCCCCCCceeeEEEE--ECCEEEEEeCc
Q 006473 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK----QEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGE 143 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~----~~W~~l~s~~~P~pRs~ha~~~--~~~~iyvfGG~ 143 (643)
..+++++.+. ++.||+.-.. .+.++++++.. .....+.......| +.+++ .++.||+.-..
T Consensus 31 ~p~g~~~d~~-~~~ly~~D~~---------~~~I~~~~~~g~~~~~~~~~~~~~~~~~p---~glavd~~~~~ly~~d~~ 97 (316)
T 1ijq_A 31 NVVALDTEVA-SNRIYWSDLS---------QRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDSV 97 (316)
T ss_dssp SEEEEEEETT-TTEEEEEETT---------TTEEEEEEC--------CEEEECSSCSCC---CEEEEETTTTEEEEEETT
T ss_pred ceEEEEEEeC-CCEEEEEECC---------CCcEEEEECCCCCCCcccEEEEeCCCCCc---CEEEEeecCCeEEEEECC
Confidence 3455666543 4788887651 24788999876 22232222111122 33343 37899997432
Q ss_pred cCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 144 FTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 144 ~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
.+.+.++++....-..+....+..| ..+++. +++||+..-. . ...|+++++....-
T Consensus 98 -----------~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~----~----~~~I~~~~~dG~~~ 155 (316)
T 1ijq_A 98 -----------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG----T----PAKIKKGGLNGVDI 155 (316)
T ss_dssp -----------TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS----S----SCEEEEEETTSCCE
T ss_pred -----------CCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccC----C----CCeEEEEcCCCCCe
Confidence 2568889987654443332112222 234443 6788886421 0 25688998864433
Q ss_pred EEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCcee
Q 006473 222 QEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (643)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g 299 (643)
..+... .. ..-.++++. ++.||+.-... ..++++|+....-..+...+ .....-
T Consensus 156 ~~~~~~-----~~-~~P~gla~d~~~~~lY~~D~~~----------------~~I~~~d~dg~~~~~~~~~~--~~~~~P 211 (316)
T 1ijq_A 156 YSLVTE-----NI-QWPNGITLDLLSGRLYWVDSKL----------------HSISSIDVNGGNRKTILEDE--KRLAHP 211 (316)
T ss_dssp EEEECS-----SC-SCEEEEEEETTTTEEEEEETTT----------------TEEEEEETTSCSCEEEEECT--TTTSSE
T ss_pred EEEEEC-----CC-CCceEEEEeccCCEEEEEECCC----------------CeEEEEecCCCceEEEeecC--CccCCc
Confidence 333221 11 111234443 78899875433 34788887653333332210 112233
Q ss_pred eEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 300 ~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.++++.++.||+.-.. .+.|+++|+.+.+
T Consensus 212 ~giav~~~~ly~~d~~--------------~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 212 FSLAVFEDKVFWTDII--------------NEAIFSANRLTGS 240 (316)
T ss_dssp EEEEEETTEEEEEETT--------------TTEEEEEETTTCC
T ss_pred EEEEEECCEEEEEECC--------------CCeEEEEeCCCCc
Confidence 5677788999987532 3568999986654
No 292
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=53.27 E-value=2.9e+02 Score=31.22 Aligned_cols=185 Identities=15% Similarity=0.257 Sum_probs=90.6
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCC-C---CCce-eeEEEEE---CCEEEEEeC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS-P---PPRS-AHQAVSW---KNYLYIFGG 142 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~-P---~pRs-~ha~~~~---~~~iyvfGG 142 (643)
-+++++.|.+.+.||+..|.+... .....||+=.=.-.+|+.+..+.. + ..|. .+.+++. .+.+|+.+-
T Consensus 77 ~~~ia~dp~~~~~~~~~~g~~~~~---~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~ 153 (763)
T 3a0f_A 77 TESIALDPHNPDRLYLAQGDYVQW---DPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSR 153 (763)
T ss_dssp EEEEECCTTCTTCEEEEECSCTTT---CSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECS
T ss_pred eeEEEECCCCCCEEEEEecccccC---CCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeC
Confidence 455666665557899877642211 112345543333458998864321 0 1232 2344443 367777541
Q ss_pred ccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC---ceeEEEEE----CCEEEEEeeeecCCCceeeeccEEEEE
Q 006473 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR---SGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFD 215 (643)
Q Consensus 143 ~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R---s~h~~~~~----~~~lyvfGG~~~~~~~~~~~~dv~~yD 215 (643)
. ..+|+=.=.-.+|+.+.. +|... .+...+.+ .+.||+.... . ..|++=.
T Consensus 154 ~------------~~l~~S~DgG~TW~~~~~--~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~-~--------g~v~~S~ 210 (763)
T 3a0f_A 154 T------------QGLWRSTDRAQTWSRMNQ--LPDSSTYGIGIISVIFDPKNVGTAYVASHA-V--------GGLWVTW 210 (763)
T ss_dssp S------------SCEEEESSTTSSCEECTT--SCCCSCTTTCEEEEEECSSSTTCEEEEESS-T--------TCEEEES
T ss_pred C------------CcEEEECCCCcCcccccc--CcccCCCccceEEEEECCCCCCEEEEEEeC-C--------CeEEEEC
Confidence 1 234433233458999874 34322 22222333 2456665321 1 0233222
Q ss_pred cCCCceEEeccCCCCC--------------C-CCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeC
Q 006473 216 LDQFKWQEIKPRFGSM--------------W-PSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (643)
Q Consensus 216 ~~t~~W~~v~~~~~~~--------------~-P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (643)
=.-.+|+.+...+... . ..++..+.+++. ++.||+........ .+.....+|+.+-
T Consensus 211 DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~--------~~~~~g~v~rS~D 282 (763)
T 3a0f_A 211 DGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGP--------WGVLYGEVWSYDP 282 (763)
T ss_dssp SSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEESSCSS--------SCCCCEEEEEEET
T ss_pred CCCCCccccCCCccccccccccccccccccccCCCCcceeEEECCCCcEEEEeccCCCC--------CCCcceeEEEEeC
Confidence 2245799987442110 0 023344444443 67788774221110 0112456888888
Q ss_pred CCCeeEEecc
Q 006473 280 RTWEWSKVKK 289 (643)
Q Consensus 280 ~t~~W~~l~~ 289 (643)
...+|+.+..
T Consensus 283 ~G~tW~~~~~ 292 (763)
T 3a0f_A 283 TNGNWKHITP 292 (763)
T ss_dssp TTTEEEECCT
T ss_pred CCCceEECCC
Confidence 8999999864
No 293
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=52.10 E-value=1.8e+02 Score=28.56 Aligned_cols=174 Identities=9% Similarity=0.082 Sum_probs=94.2
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCC----CcEEEeccC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT----NQWEQLNLK 174 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t----~~W~~~~~~ 174 (643)
+.+.++++.+.....+.. ....-++++.. ++.||+.... ...++++++.+ .....+...
T Consensus 10 ~~I~~i~~~~~~~~~~~~----~~~~p~g~~~d~~~~~ly~~D~~-----------~~~I~~~~~~g~~~~~~~~~~~~~ 74 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLS-----------QRMICSTQLDRAHGVSSYDTVISR 74 (316)
T ss_dssp SSEEEEETTSCCCEEEEC----SCSSEEEEEEETTTTEEEEEETT-----------TTEEEEEEC--------CEEEECS
T ss_pred CeEEEEECCCcceEehhc----CCCceEEEEEEeCCCEEEEEECC-----------CCcEEEEECCCCCCCcccEEEEeC
Confidence 468889998887766532 22334555554 5789998642 25688999876 222322221
Q ss_pred CCCCCCceeEEEE--ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEE
Q 006473 175 GCPSPRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFL 250 (643)
Q Consensus 175 g~P~~Rs~h~~~~--~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv 250 (643)
++..| +++++ .++.||+.-.. .+.+.++++....-..+... ....|+ .+++. ++.||+
T Consensus 75 ~~~~p---~glavd~~~~~ly~~d~~---------~~~I~~~~~~g~~~~~~~~~---~~~~P~---~iavdp~~g~ly~ 136 (316)
T 1ijq_A 75 DIQAP---DGLAVDWIHSNIYWTDSV---------LGTVSVADTKGVKRKTLFRE---NGSKPR---AIVVDPVHGFMYW 136 (316)
T ss_dssp SCSCC---CEEEEETTTTEEEEEETT---------TTEEEEEETTSSSEEEEEEC---TTCCEE---EEEEETTTTEEEE
T ss_pred CCCCc---CEEEEeecCCeEEEEECC---------CCEEEEEeCCCCceEEEEEC---CCCCcc---eEEeCCCCCEEEE
Confidence 12222 34454 37899986321 35688888875433333221 012232 33443 788888
Q ss_pred EcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--CCeEEEeccccccccCccccccc
Q 006473 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSL 328 (643)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~ 328 (643)
..... ...++++++....-..+... ....-.++++- +++||+.-..
T Consensus 137 ~d~~~---------------~~~I~~~~~dG~~~~~~~~~----~~~~P~gla~d~~~~~lY~~D~~------------- 184 (316)
T 1ijq_A 137 TDWGT---------------PAKIKKGGLNGVDIYSLVTE----NIQWPNGITLDLLSGRLYWVDSK------------- 184 (316)
T ss_dssp EECSS---------------SCEEEEEETTSCCEEEEECS----SCSCEEEEEEETTTTEEEEEETT-------------
T ss_pred EccCC---------------CCeEEEEcCCCCCeEEEEEC----CCCCceEEEEeccCCEEEEEECC-------------
Confidence 75321 13488888765433333211 11223355554 6888887532
Q ss_pred cCCcEEEEECCC
Q 006473 329 FLNELYGFQLDN 340 (643)
Q Consensus 329 ~~ndl~~yd~~t 340 (643)
.+.|++||++.
T Consensus 185 -~~~I~~~d~dg 195 (316)
T 1ijq_A 185 -LHSISSIDVNG 195 (316)
T ss_dssp -TTEEEEEETTS
T ss_pred -CCeEEEEecCC
Confidence 35688998875
No 294
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=50.70 E-value=2.2e+02 Score=29.03 Aligned_cols=178 Identities=10% Similarity=-0.004 Sum_probs=95.5
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
+.|+++++.......+.......|. +.++-..++.||+.-.. .+.++++++....-..+...++..|
T Consensus 138 ~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~lY~~d~~-----------~~~I~~~~~dg~~~~~l~~~~l~~P- 204 (386)
T 3v65_B 138 DRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSG-----------TSRIEVANLDGAHRKVLLWQSLEKP- 204 (386)
T ss_dssp TEEEEEETTSCCEEEEECSSCSCCC-CEEEETTTTEEEEEETT-----------TTEEEECBTTSCSCEEEECSSCSCE-
T ss_pred CcEEEEecCCCCcEEEEeCCCCCcc-EEEEEeCCCeEEEEcCC-----------CCeEEEEeCCCCceEEeecCCCCCC-
Confidence 4688888888776665433222221 22222237899987542 2467888876554443333222222
Q ss_pred ceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEE--eCCEEEEEcCCCC
Q 006473 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV--YQDEVFLYGGYSK 256 (643)
Q Consensus 181 s~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~--~~~~iyv~GG~~~ 256 (643)
..+++. ++.||+.--. . ...|+++++....-..+.... ...| .++++ .++.||+.-...
T Consensus 205 --~giavdp~~g~ly~td~~----~----~~~I~r~~~dG~~~~~~~~~~---~~~P---nGlavd~~~~~lY~aD~~~- 267 (386)
T 3v65_B 205 --RAIALHPMEGTIYWTDWG----N----TPRIEASSMDGSGRRIIADTH---LFWP---NGLTIDYAGRRMYWVDAKH- 267 (386)
T ss_dssp --EEEEEETTTTEEEEEECS----S----SCEEEEEETTSCSCEEEECSS---CSCE---EEEEEEGGGTEEEEEETTT-
T ss_pred --cEEEEEcCCCeEEEeccC----C----CCEEEEEeCCCCCcEEEEECC---CCCe---eeEEEeCCCCEEEEEECCC-
Confidence 234443 6788876321 0 257899998754433332210 0111 23333 378899885433
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEE
Q 006473 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGF 336 (643)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~y 336 (643)
..|+++++....-..+...+ ...-.++++..+.||+.--. .+.|+++
T Consensus 268 ---------------~~I~~~d~dG~~~~~~~~~~----~~~P~giav~~~~ly~td~~--------------~~~V~~~ 314 (386)
T 3v65_B 268 ---------------HVIERANLDGSHRKAVISQG----LPHPFAITVFEDSLYWTDWH--------------TKSINSA 314 (386)
T ss_dssp ---------------TEEEEECTTSCSCEEEECSS----CSSEEEEEEETTEEEEEETT--------------TTEEEEE
T ss_pred ---------------CEEEEEeCCCCeeEEEEECC----CCCceEEEEECCEEEEeeCC--------------CCeEEEE
Confidence 34888887643322222211 11235677788999987532 3568899
Q ss_pred ECCCC
Q 006473 337 QLDNH 341 (643)
Q Consensus 337 d~~t~ 341 (643)
|..+.
T Consensus 315 ~~~~G 319 (386)
T 3v65_B 315 NKFTG 319 (386)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 85444
No 295
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=50.39 E-value=2.2e+02 Score=28.99 Aligned_cols=174 Identities=10% Similarity=0.038 Sum_probs=97.2
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
+.++++++.......+... ...-.+++.. ++.||+.--. ...++++++.....+.+...++..
T Consensus 96 ~~I~~i~~~~~~~~~~~~~----~~~~~gl~~d~~~~~ly~~D~~-----------~~~I~r~~~~g~~~~~~~~~~~~~ 160 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNN----LENAIALDFHHRRELVFWSDVT-----------LDRILRANLNGSNVEEVVSTGLES 160 (386)
T ss_dssp SCEEEECTTSCCCEEEECS----CSCEEEEEEETTTTEEEEEETT-----------TTEEEEEETTSCCEEEEECSSCSC
T ss_pred ccceeeccCCCcEEEEecC----CCccEEEEEecCCCeEEEEeCC-----------CCcEEEEecCCCCcEEEEeCCCCC
Confidence 4688888888777665432 2223444443 6889988432 256899999888776654433322
Q ss_pred CCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCC
Q 006473 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGY 254 (643)
Q Consensus 179 ~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~ 254 (643)
| .++++- ++.||+.-.. .+.++++++....-..+... ....|+ .+++. ++.||+.-..
T Consensus 161 p---~glavd~~~g~lY~~d~~---------~~~I~~~~~dg~~~~~l~~~---~l~~P~---giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 161 P---GGLAVDWVHDKLYWTDSG---------TSRIEVANLDGAHRKVLLWQ---SLEKPR---AIALHPMEGTIYWTDWG 222 (386)
T ss_dssp C---CCEEEETTTTEEEEEETT---------TTEEEECBTTSCSCEEEECS---SCSCEE---EEEEETTTTEEEEEECS
T ss_pred c---cEEEEEeCCCeEEEEcCC---------CCeEEEEeCCCCceEEeecC---CCCCCc---EEEEEcCCCeEEEeccC
Confidence 2 233443 7889886431 34678888765443333221 112222 23343 7788876432
Q ss_pred CCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--CCeEEEeccccccccCccccccccCCc
Q 006473 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (643)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~nd 332 (643)
. ...++++++....-..+...+ ...-.++++- +++||+.-.. .+.
T Consensus 223 ~---------------~~~I~r~~~dG~~~~~~~~~~----~~~PnGlavd~~~~~lY~aD~~--------------~~~ 269 (386)
T 3v65_B 223 N---------------TPRIEASSMDGSGRRIIADTH----LFWPNGLTIDYAGRRMYWVDAK--------------HHV 269 (386)
T ss_dssp S---------------SCEEEEEETTSCSCEEEECSS----CSCEEEEEEEGGGTEEEEEETT--------------TTE
T ss_pred C---------------CCEEEEEeCCCCCcEEEEECC----CCCeeeEEEeCCCCEEEEEECC--------------CCE
Confidence 1 234888888654433332211 1112345553 7888887432 356
Q ss_pred EEEEECCC
Q 006473 333 LYGFQLDN 340 (643)
Q Consensus 333 l~~yd~~t 340 (643)
|++||++.
T Consensus 270 I~~~d~dG 277 (386)
T 3v65_B 270 IERANLDG 277 (386)
T ss_dssp EEEECTTS
T ss_pred EEEEeCCC
Confidence 88888764
No 296
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=48.05 E-value=2.4e+02 Score=28.66 Aligned_cols=76 Identities=5% Similarity=-0.136 Sum_probs=40.0
Q ss_pred CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCE--EEEEcCCCCCCCCccCCC
Q 006473 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDE--VFLYGGYSKEVSTDKNQS 265 (643)
Q Consensus 189 ~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~--iyv~GG~~~~~~~~~~~~ 265 (643)
+++||+..............+.|+++|+.+.+- +... |.+...+++.+. +++ +|+..+.+
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v--v~~i-----~~g~~p~~i~~s~Dg~~~l~v~~~~~---------- 340 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQI-----SLGHDVDAISVAQDGGPDLYALSAGT---------- 340 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEE--EEEE-----ECCCCcCeEEECCCCCeEEEEEcCCC----------
Confidence 578898754211100011247899999987654 2222 122223344444 343 55433222
Q ss_pred CCCceeeeEEEEeCCCCeeEEe
Q 006473 266 EKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 266 ~~~~~~~dv~~yd~~t~~W~~l 287 (643)
+++.+||+.+.+-...
T Consensus 341 ------~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 341 ------EVLHIYDAGAGDQDQS 356 (373)
T ss_pred ------CeEEEEECCCCCEEee
Confidence 4589999887765544
No 297
>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia} SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A*
Probab=46.17 E-value=2.4e+02 Score=28.25 Aligned_cols=186 Identities=13% Similarity=0.192 Sum_probs=97.0
Q ss_pred EEEECCCCcEEEec--CCC-CCCCceeeEEEEEC------CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccC
Q 006473 104 YRYDVEKQEWKVIS--SPN-SPPPRSAHQAVSWK------NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK 174 (643)
Q Consensus 104 ~~yd~~~~~W~~l~--s~~-~P~pRs~ha~~~~~------~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~ 174 (643)
.+|+. ..|..-. ... .+.+.+.-+++.++ .+|.||.=..... -+.++.+-.... |..-...
T Consensus 90 ~~~~~--~~W~~g~L~~~~~~~~~~S~lAAvs~~~~~~~~~~i~Vf~q~~~~~-------dn~I~e~~~~g~-W~~~~~l 159 (312)
T 1ofz_A 90 FVYDG--SKWITGQLGSVGVKVGSNSKLAALQWGGSESAPPNIRVYYQKSNLS-------GSSIHEYVWSGK-WTAGASF 159 (312)
T ss_dssp EEEES--SCEEECGGGGGCCBCCTTCCCEEEEESCBTTBCCEEEEEECSCCST-------TEEEEEEEESSS-EEEEEEE
T ss_pred EEecC--CCccccccCCcccccCCCCcceEEEecCCCCCCCeEEEEEEeccCC-------CCeEEEEEccCC-cccCCCc
Confidence 35675 5798744 211 24567777777774 3777773200000 134443333334 9876653
Q ss_pred CCCCCCceeEEEEEC-CEEEEEeeeecCCCceeeeccEE--EEEcCCCceEEeccCCCCCCCCCccceeEEEe-CC-EEE
Q 006473 175 GCPSPRSGHRMVLYK-HKIIVFGGFYDTLREVRYYNDLY--VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD-EVF 249 (643)
Q Consensus 175 g~P~~Rs~h~~~~~~-~~lyvfGG~~~~~~~~~~~~dv~--~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~-~iy 249 (643)
+...++++.+++.+. ++|-||--..+ +.|+ +||. ..|....... ...|++..+++.. ++ +|-
T Consensus 160 g~~~~gT~laa~s~~~~~i~vf~q~~d--------n~i~~~~~d~--~~W~~~~~~~---~~~p~s~lAavs~~~~~~i~ 226 (312)
T 1ofz_A 160 GSTAPGTGIGATAIGPGRLRIYYQATD--------NKIREHCWDS--NSWYVGGFSA---SASAGVSIAAISWGSTPNIR 226 (312)
T ss_dssp EEESTTCCEEEEEEETTEEEEEEEBTT--------SEEEEEEESS--SCEEEEEEEE---ECCTTCEEEEEEETTTTEEE
T ss_pred CCccCCCCcceeecCCCCEEEEEEcCC--------CcEEEEEecC--CcceECCEec---CcCCCCCcEEEEeCCCCEEE
Confidence 335667778888774 78888743221 3343 4444 5687665531 1355666666665 34 555
Q ss_pred EE--cCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeE---EeccCC--CCCCCceeeEEEEECC-eEEEeccccccccC
Q 006473 250 LY--GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS---KVKKIG--MPPGPRAGFSMCVHKK-RALLFGGVVDMEMK 321 (643)
Q Consensus 250 v~--GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~---~l~~~g--~~P~~R~g~s~~~~~~-~iyvfGG~~~~~~~ 321 (643)
|| |+- . .+.. ..|+ ..|. .+.... ..+.+++..+++..++ +|.||=-.
T Consensus 227 lf~~~~~-n------------~i~~--~~~~---~~W~~~~~~~d~~~~~~~~~~s~~aa~s~~~~~i~lf~q~------ 282 (312)
T 1ofz_A 227 VYWQKGR-E------------ELYE--AAYG---GSWNTPGQIKDASRPTPSLPDTFIAANSSGNIDISVFFQA------ 282 (312)
T ss_dssp EEEECTT-S------------CEEE--EEES---SSBCCCEEECCTTSCSCBCTTCCCEEEEETTTEEEEEEEE------
T ss_pred EEEECCC-C------------cEEE--EEec---CCccccccccCcccccCcCCCCceEEEecCCCeEEEEEeC------
Confidence 54 332 1 1221 2344 4577 332211 1233666666766654 66665321
Q ss_pred ccccccccCCcEE--EEECCCCc-EEE
Q 006473 322 GDVIMSLFLNELY--GFQLDNHR-WYP 345 (643)
Q Consensus 322 ~~~~~~~~~ndl~--~yd~~t~~-W~~ 345 (643)
+.|+ .|.-...+ |+.
T Consensus 283 ---------~~i~~~~~~w~~~~~w~~ 300 (312)
T 1ofz_A 283 ---------SGVSLQQWQWISGKGWSI 300 (312)
T ss_dssp ---------TTTEEEEEEEETTTEEEE
T ss_pred ---------CeeEEEEEEecCCCcccc
Confidence 3355 56555666 877
No 298
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=46.17 E-value=84 Score=35.04 Aligned_cols=102 Identities=14% Similarity=0.345 Sum_probs=53.2
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC-cEE--EecC--CCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcce
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWK--VISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFH 153 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~-~W~--~l~s--~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~ 153 (643)
++++|+|=|. .+|+++.... ... .|.. +.+| ..--++... ++++|+|-|
T Consensus 453 rg~~yfFKg~-----------~yWr~~~~~~~~~~P~~Is~~wp~LP--~~IDAA~~~~~~~k~yFFkG----------- 508 (631)
T 1ck7_A 453 RGEIFFFKDR-----------FIWRTVTPRDKPMGPLLVATFWPELP--EKIDAVYEAPQEEKAVFFAG----------- 508 (631)
T ss_dssp SSSEEEECSS-----------EEEEESCTTSCCEEEEEGGGTCTTSC--SSCSBCCEETTTTEEEEEET-----------
T ss_pred CCcEEEEcCC-----------EEEEEcCCCCCCCCceeccccCCCCC--ccceEEEEECCCCEEEEEec-----------
Confidence 6889999883 5677665442 121 1221 1222 222223333 678999977
Q ss_pred ecCeEEEEECCCC--cE-EEeccCCCCCCCce-eEEEE--ECCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 154 HYKDFWMLDLKTN--QW-EQLNLKGCPSPRSG-HRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 154 ~~~dv~~yD~~t~--~W-~~~~~~g~P~~Rs~-h~~~~--~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
+.+|+|+..+- -+ ..+...+.|..-.. -++.. .++++|+|-| +..|+||..+.
T Consensus 509 --~~yWry~~~~l~~GYPk~Is~~G~P~~~~~IDAAf~~~~~gktYFFkG-----------~~ywryd~~~~ 567 (631)
T 1ck7_A 509 --NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-----------DKFWRYNEVKK 567 (631)
T ss_dssp --TEEEEEETTEECTTCCEEGGGGTCCTTCCCCCBCCCCTTTCEEEEEET-----------TEEEEEETTTT
T ss_pred --CEEEEECCCccccCCCccchhcCCCCCCCcceeEEEecCCCeEEEEEC-----------CEEEEEcCCcc
Confidence 46899985310 01 11222122322111 12222 2679999977 46889997654
No 299
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=44.52 E-value=4e+02 Score=30.24 Aligned_cols=238 Identities=15% Similarity=0.270 Sum_probs=110.7
Q ss_pred CCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCC----CCCc-eeeEEEEE---CCEEEEE
Q 006473 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS----PPPR-SAHQAVSW---KNYLYIF 140 (643)
Q Consensus 69 R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~----P~pR-s~ha~~~~---~~~iyvf 140 (643)
+.-+++++.|.+.+.||+..|...... ...||+=.-.-.+|+.+..+.. ...| ..+.+++. .+.||+
T Consensus 64 ~~i~~ia~dp~~~~~i~~~~g~~~~~~----~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~- 138 (789)
T 1sqj_A 64 MGTESIALDPNNPDRLYLAQGRYVGDE----WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWM- 138 (789)
T ss_dssp CSEEEEEEETTEEEEEEEEECSCTTSS----CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEE-
T ss_pred CceeEEEECCCCCCEEEEEeCccCCCc----ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEE-
Confidence 345566666543467888766421010 1455554334568998864311 0123 23445554 345666
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC-CCCCceeEEEEE----CCEEEEEeeeecCCCceeeeccEEEEE
Q 006473 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFD 215 (643)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~~Rs~h~~~~~----~~~lyvfGG~~~~~~~~~~~~dv~~yD 215 (643)
|... ..+|+=.=.-.+|+.+..... ...-.+...+.+ .+.||+.... . ..|++=.
T Consensus 139 g~~~-----------~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~-~--------~~v~~S~ 198 (789)
T 1sqj_A 139 GTRT-----------EGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA-P--------QGMYVTH 198 (789)
T ss_dssp ECSS-----------SCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS-T--------TCEEEES
T ss_pred Eecc-----------CCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC-C--------CeEEEEc
Confidence 4321 234443333468999875210 011122233333 2466664321 0 2233221
Q ss_pred cCCCceEEeccCCCCC-------CC----CCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC
Q 006473 216 LDQFKWQEIKPRFGSM-------WP----SPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (643)
Q Consensus 216 ~~t~~W~~v~~~~~~~-------~P----~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (643)
=.-.+|+.+...+.+. +| .....|.+++. .+.||+..+..... -......+|+.+-...
T Consensus 199 DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p--------~~g~~g~l~~S~DgG~ 270 (789)
T 1sqj_A 199 DGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGP--------WGVTFGEVWRQNRTSG 270 (789)
T ss_dssp STTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSS--------SCCCCCCEEEEETTTC
T ss_pred CCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCC--------CCCCCceEEEEeCCCC
Confidence 1235799987443221 11 11112444443 78888874321110 0012335788888888
Q ss_pred eeEEeccCCC--CCCC----ce---ee-EEEEE---CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 283 EWSKVKKIGM--PPGP----RA---GF-SMCVH---KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 283 ~W~~l~~~g~--~P~~----R~---g~-s~~~~---~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
+|+.+..... .|.+ .+ ++ .+++. .+.||+.++....+ .....||+=.=...+|..+.
T Consensus 271 tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~~~~~--------~~~~~l~~S~DgG~tW~~~~ 340 (789)
T 1sqj_A 271 AWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDRDPG--------PALDSIYLSTDAGATWKDVT 340 (789)
T ss_dssp CEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEECCCSC--------SSCCCEEEESSTTSSEEEHH
T ss_pred ceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEeccCCC--------cccccEEEecCCCCCceeCc
Confidence 9999875211 0111 22 43 44554 25677766532100 00123554433456899886
No 300
>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia} SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A*
Probab=43.70 E-value=2.6e+02 Score=27.97 Aligned_cols=118 Identities=16% Similarity=0.161 Sum_probs=63.7
Q ss_pred EEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE--EEECCCCcEEEeccCCCCCCCceeEEEEEC
Q 006473 113 WKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW--MLDLKTNQWEQLNLKGCPSPRSGHRMVLYK 189 (643)
Q Consensus 113 W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~--~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~ 189 (643)
|..-.....+.++++.+++.. .++|-||--.. -+.++ ++|. ..|..........+++..+++.++
T Consensus 153 W~~~~~lg~~~~gT~laa~s~~~~~i~vf~q~~----------dn~i~~~~~d~--~~W~~~~~~~~~~p~s~lAavs~~ 220 (312)
T 1ofz_A 153 WTAGASFGSTAPGTGIGATAIGPGRLRIYYQAT----------DNKIREHCWDS--NSWYVGGFSASASAGVSIAAISWG 220 (312)
T ss_dssp EEEEEEEEEESTTCCEEEEEEETTEEEEEEEBT----------TSEEEEEEESS--SCEEEEEEEEECCTTCEEEEEEET
T ss_pred cccCCCcCCccCCCCcceeecCCCCEEEEEEcC----------CCcEEEEEecC--CcceECCEecCcCCCCCcEEEEeC
Confidence 885544333466777777777 47777774211 13343 4444 568765542235677888888874
Q ss_pred -C-EEEEEeeeecCCCceeeeccEEEEEcCCCceE---EeccCCCCCCCCCccceeEEEeCC-EEEEE
Q 006473 190 -H-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ---EIKPRFGSMWPSPRSGFQFFVYQD-EVFLY 251 (643)
Q Consensus 190 -~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~---~v~~~~~~~~P~~R~~~s~~~~~~-~iyv~ 251 (643)
+ +|-||--.. .+.|+.+--. ..|+ +|..-.......+++..+++..++ .|.||
T Consensus 221 ~~~~i~lf~~~~--------~n~i~~~~~~-~~W~~~~~~~d~~~~~~~~~~s~~aa~s~~~~~i~lf 279 (312)
T 1ofz_A 221 STPNIRVYWQKG--------REELYEAAYG-GSWNTPGQIKDASRPTPSLPDTFIAANSSGNIDISVF 279 (312)
T ss_dssp TTTEEEEEEECT--------TSCEEEEEES-SSBCCCEEECCTTSCSCBCTTCCCEEEEETTTEEEEE
T ss_pred CCCEEEEEEECC--------CCcEEEEEec-CCccccccccCcccccCcCCCCceEEEecCCCeEEEE
Confidence 4 776664311 1445554333 4588 443221112234566666666643 55444
No 301
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=43.63 E-value=3.9e+02 Score=29.98 Aligned_cols=106 Identities=14% Similarity=0.141 Sum_probs=59.2
Q ss_pred ccEEEEECCC--CcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCC--------CcEEE
Q 006473 101 GDLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT--------NQWEQ 170 (643)
Q Consensus 101 ndv~~yd~~~--~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t--------~~W~~ 170 (643)
+.+|..+... .+|..+..+ . ...+ ....++.+||+....-... +.......+..+++.+ ..|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~---~-~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 342 (711)
T 4hvt_A 269 YDNYILDTKYKNLKLQKINMP---S-DATL-QGSFKEYVFWLLRSDWKFK-SHNIKAGSLVALHFTDLLKTESDKTSLKI 342 (711)
T ss_dssp EEEEEEECSSSSCEEEECCSC---T-TCEE-EEEETTEEEEECSSCEEET-TEEECTTCEEEEEGGGGGSCGGGCTTCEE
T ss_pred eeEEEEcCCCCCCcceEeecC---C-cceE-eeeECCEEEEEECcccccc-cccCCCCeEEEEECCcccccccccccceE
Confidence 6778877664 678887332 2 2222 3455899999764321000 0011235688888765 46887
Q ss_pred eccCCCCCCCce-eEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceE
Q 006473 171 LNLKGCPSPRSG-HRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (643)
Q Consensus 171 ~~~~g~P~~Rs~-h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (643)
+-. |..... ......++.||+..-... ...++++|+.+..|.
T Consensus 343 ~~~---~~~~~~l~~~~~~~~~l~~~~~~~~-------~~~l~~~~~~~g~~~ 385 (711)
T 4hvt_A 343 LFT---PTANEVFNFISTTKDRVFLATYDNV-------VAKVVTFTLENEQWT 385 (711)
T ss_dssp EEC---CCTTEEEEEEEECSSCEEEEEEETT-------EEEEEEECEETTEEC
T ss_pred EEC---CCCCCeEEEEEEECCEEEEEEEECC-------EEEEEEEECCCCceE
Confidence 432 223222 234444677776543221 456889998888774
No 302
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=42.36 E-value=1.9e+02 Score=29.94 Aligned_cols=125 Identities=8% Similarity=-0.012 Sum_probs=64.9
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEE-eccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeecc
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQ-LNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYND 210 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~-~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~d 210 (643)
++.+||.-..+. ...+.++++|+.+++-.. ++. ....| +++- +.++|+...+..........+.
T Consensus 44 ~~~vyV~~~~~~-------~~~~~V~ViD~~t~~v~~~I~v-----G~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~ 110 (386)
T 3sjl_D 44 ARRVYVNDPAHF-------AAVTQQFVIDGEAGRVIGMIDG-----GFLPN-PVVADDGSFIAHASTVFSRIARGERTDY 110 (386)
T ss_dssp TTEEEEEECGGG-------CSSEEEEEEETTTTEEEEEEEE-----CSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred CCEEEEEcCccc-------CCCCEEEEEECCCCeEEEEEEC-----CCCCc-EEECCCCCEEEEEcccccccccCCCCCE
Confidence 567888754311 123679999999887433 322 22225 4443 5578887643211110112567
Q ss_pred EEEEEcCCCceEE-eccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 211 LYVFDLDQFKWQE-IKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 211 v~~yD~~t~~W~~-v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
|.+||+.+.+-.. +.............-+.+++. +..+|+..... .+.+.++|+.+.+-..
T Consensus 111 VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~---------------~~~VsVID~~t~~vv~ 174 (386)
T 3sjl_D 111 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP---------------APAVGVVDLEGKAFKR 174 (386)
T ss_dssp EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS---------------SCEEEEEETTTTEEEE
T ss_pred EEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCC---------------CCeEEEEECCCCcEEE
Confidence 9999999987433 322210000011122233333 66788764221 2358889988876443
No 303
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=42.26 E-value=1.4e+02 Score=33.52 Aligned_cols=69 Identities=10% Similarity=0.125 Sum_probs=36.2
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEE--EEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRM--VLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~--~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
..+++||+.+++-..+-.. ........+. ..+ +++.++|+..........+..++|+||+.+.+...+.
T Consensus 36 ~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~ 108 (740)
T 4a5s_A 36 NNILVFNAEYGNSSVFLEN-STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEE 108 (740)
T ss_dssp TEEEEEETTTCCEEEEECT-TTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS
T ss_pred CcEEEEECCCCceEEEEec-hhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcc
Confidence 3688999998876554221 1111111111 122 5554555554322221234578999999998755443
No 304
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=41.72 E-value=3.3e+02 Score=28.57 Aligned_cols=211 Identities=16% Similarity=0.182 Sum_probs=104.4
Q ss_pred EeeccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEE---EECCCCcE-EEecCCCCCCCceeeEEEEE
Q 006473 58 HVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYR---YDVEKQEW-KVISSPNSPPPRSAHQAVSW 133 (643)
Q Consensus 58 ~~~~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~---yd~~~~~W-~~l~s~~~P~pRs~ha~~~~ 133 (643)
.++++...|..-.-|+++.+ ++.-|.+|=...+-.++. +.-+|+ |+.-...- +.+++- .-..-+.-++-.+
T Consensus 273 ~~t~L~~i~~vTe~HSFa~i---~~~~fa~GyHnGDv~PRe-~G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPCvkyY 347 (670)
T 3ju4_A 273 RKTDLGLIPSVTEVHSFATI---DNNGFAMGYHQGDVAPRE-VGLFYFPDAFNSPSNYVRRQIPSE-YEPDASEPCIKYY 347 (670)
T ss_dssp EEEECCSCTTCSEEEEEEEC---SSSCEEEEEEECSSSSCE-EEEEEETTTTTCTTCCEEEECCGG-GCTTEEEEEEEEE
T ss_pred eecccccccceeeeeeeeEe---cCCceEEEeccCCCCcce-eeEEEecccccCCcceeeeechhh-hccccccchhhhh
Confidence 34466777777788999988 666678875433333322 223332 11111122 233332 1122334445556
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecC------CCceee
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDT------LREVRY 207 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~------~~~~~~ 207 (643)
++.||+.---..... .=+.+.+-+.....|+.+..+ ...-.+..-.+.+++.||+||--..- ....+|
T Consensus 348 dgvLyLtTRgt~~~~-----~GS~L~rs~d~Gq~w~slrfp-~nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~pD~RY 421 (670)
T 3ju4_A 348 DGVLYLITRGTRGDR-----LGSSLHRSRDIGQTWESLRFP-HNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRY 421 (670)
T ss_dssp TTEEEEEEEESCTTS-----CCCEEEEESSTTSSCEEEECT-TCCCSSCCCEEEETTEEEEEEECSSTTCSSTTCCCCCS
T ss_pred CCEEEEEecCcCCCC-----CcceeeeecccCCchhheecc-ccccccCCCcceeCCEEEEEeccccccccccCCCcccc
Confidence 999999853222111 124566777777889988752 11222333456789999999864211 001111
Q ss_pred ---eccEEE--EE-----cCCCceEEeccC--CCCCCCCCccceeEEEeCCEE-EEEcCCCCCCC------CccCCCCCC
Q 006473 208 ---YNDLYV--FD-----LDQFKWQEIKPR--FGSMWPSPRSGFQFFVYQDEV-FLYGGYSKEVS------TDKNQSEKG 268 (643)
Q Consensus 208 ---~~dv~~--yD-----~~t~~W~~v~~~--~~~~~P~~R~~~s~~~~~~~i-yv~GG~~~~~~------~~~~~~~~~ 268 (643)
+...+. .+ ...-.|..|... .++....+..--++|+.++-| |||||-+.-.. ..+...-..
T Consensus 422 ~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~np~s~gdN~~k~~~~~~ 501 (670)
T 3ju4_A 422 KASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSD 501 (670)
T ss_dssp SCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSCCCCTTTTTTTCCTTSTT
T ss_pred cccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccCCccccccccccCccccC
Confidence 112222 22 234457777543 122223344334455556665 57888543210 001111122
Q ss_pred ceeeeEEEEeC
Q 006473 269 IIHSDLWSLDP 279 (643)
Q Consensus 269 ~~~~dv~~yd~ 279 (643)
....++|+|.+
T Consensus 502 Ghp~dlY~~ri 512 (670)
T 3ju4_A 502 GHPSDLYCYKM 512 (670)
T ss_dssp CCCCEEEEEEE
T ss_pred CCCcceEEEEE
Confidence 34568899874
No 305
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=41.13 E-value=3.1e+02 Score=28.09 Aligned_cols=18 Identities=6% Similarity=0.132 Sum_probs=13.3
Q ss_pred eeeEEEEE-CCeEEEeccc
Q 006473 298 AGFSMCVH-KKRALLFGGV 315 (643)
Q Consensus 298 ~g~s~~~~-~~~iyvfGG~ 315 (643)
..|++++. ++.+|.+|-.
T Consensus 303 ~~ht~alt~~G~v~~wG~n 321 (423)
T 3mvd_K 303 QHHTVILTTDLKCSVVGRP 321 (423)
T ss_dssp SSEEEEEETTCCEEEEECC
T ss_pred cCeEEEEeCCCcEEEEECC
Confidence 45777776 6889999853
No 306
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=39.95 E-value=2.7e+02 Score=27.04 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=14.2
Q ss_pred CceeEEEEECCEEEEEeee
Q 006473 180 RSGHRMVLYKHKIIVFGGF 198 (643)
Q Consensus 180 Rs~h~~~~~~~~lyvfGG~ 198 (643)
-..|++++-++.+|.+|-.
T Consensus 149 G~~~~~~l~~G~v~~wG~n 167 (282)
T 3qhy_B 149 GVYTALAVKNGGVIAWGDN 167 (282)
T ss_dssp CSSEEEEEETTEEEEEECC
T ss_pred ccCEEEEEECCEEEEecCC
Confidence 3456777679999999864
No 307
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=38.93 E-value=26 Score=39.10 Aligned_cols=60 Identities=17% Similarity=0.329 Sum_probs=35.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEE-----Eecc--CCCCCCCceeEEEEEC--CEEEEEeeeecCCCc
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE-----QLNL--KGCPSPRSGHRMVLYK--HKIIVFGGFYDTLRE 204 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~-----~~~~--~g~P~~Rs~h~~~~~~--~~lyvfGG~~~~~~~ 204 (643)
++++|+|-| +.+|+||..+++-. .+.. .+.| ..-.++..++ +++|+|-|
T Consensus 548 ~gktYFFkG-------------~~ywryd~~~~~vd~gYPk~i~~~w~G~p--~~iDAAf~~~~~g~~YFFkG------- 605 (631)
T 1ck7_A 548 NKKTYIFAG-------------DKFWRYNEVKKKMDPGFPKLIADAWNAIP--DNLDAVVDLQGGGHSYFFKG------- 605 (631)
T ss_dssp TCEEEEEET-------------TEEEEEETTTTEECTTCCEETTTSCSSCC--TTCCEEECCTTSCBCEEEET-------
T ss_pred CCeEEEEEC-------------CEEEEEcCCcccccCCCCcchHhhcCCCC--CCCcEeEEEcCCCeEEEEEC-------
Confidence 689999987 46899998765321 1111 1112 2223444444 78999977
Q ss_pred eeeeccEEEEEcCCC
Q 006473 205 VRYYNDLYVFDLDQF 219 (643)
Q Consensus 205 ~~~~~dv~~yD~~t~ 219 (643)
+..|+||..+.
T Consensus 606 ----~~Ywr~d~~~~ 616 (631)
T 1ck7_A 606 ----AYYLKLENQSL 616 (631)
T ss_dssp ----TEEECCBTTBT
T ss_pred ----CEEEEEeCccc
Confidence 34577776543
No 308
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=38.39 E-value=4.9e+02 Score=29.60 Aligned_cols=175 Identities=9% Similarity=0.074 Sum_probs=92.9
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCC----cEEEeccC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN----QWEQLNLK 174 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~----~W~~~~~~ 174 (643)
+.+.++++....+..+... .+.-.++++. .+.||+.-.. .+.|+++++... ....+...
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~----~~~~~gl~~d~~~~~lY~sD~~-----------~~~I~~~~l~g~~~~~~~~~vi~~ 468 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPN----LRNVVALDTEVASNRIYWSDLS-----------QRMICSTQLDRAHGVSSYDTVISR 468 (791)
T ss_dssp SSEEEECTTSCCCEEEECS----CSSEEEEEEETTTTEEEEEETT-----------TTEEEEEEC--------CEEEECS
T ss_pred cceeEeeccCCcceeeecC----CCceEEEeecccCCeeEEeecc-----------ceeEEEEeccCCCCCcceeEEEec
Confidence 3567777777777666432 2333444443 6889998542 245778887642 33333221
Q ss_pred CCCCCCceeEEEE--ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEE
Q 006473 175 GCPSPRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFL 250 (643)
Q Consensus 175 g~P~~Rs~h~~~~--~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv 250 (643)
++..| .++++ .++.||+.-. ..+.|+++++....-..+... ....|+ .+++. ++.||+
T Consensus 469 ~l~~P---~GLAvD~~~~~LY~tD~---------~~~~I~v~~ldG~~~~~l~~~---~l~~P~---gIaVDp~~g~LYw 530 (791)
T 3m0c_C 469 DIQAP---DGLAVDWIHSNIYWTDS---------VLGTVSVADTKGVKRKTLFRE---NGSKPR---AIVVDPVHGFMYW 530 (791)
T ss_dssp SCSCC---CEEEEETTTTEEEEEET---------TTTEEEEEETTSSSEEEEEEC---TTCCEE---EEEEETTTTEEEE
T ss_pred CCCCc---ceeeeeecCCcEEEEec---------CCCeEEEEeCCCCeEEEEEeC---CCCCcc---eEEEecCCCCEEE
Confidence 22222 23444 3679998632 145788999876554444322 112232 34443 688988
Q ss_pred EcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--CCeEEEeccccccccCccccccc
Q 006473 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSL 328 (643)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~ 328 (643)
.--.. ...|+++++....-..+...+ ...-.++++- +++||+.-..
T Consensus 531 tD~g~---------------~~~I~~~~~dG~~~~~lv~~~----l~~P~GLavD~~~~~LYwaD~~------------- 578 (791)
T 3m0c_C 531 TDWGT---------------PAKIKKGGLNGVDIYSLVTEN----IQWPNGITLDLLSGRLYWVDSK------------- 578 (791)
T ss_dssp EECSS---------------SCEEEEEETTSCCEEEEECSS----CSCEEEEEEETTTTEEEEEETT-------------
T ss_pred ecCCC---------------CCeEEEEecCCCceEEEEeCC----CCCceEEEEecCCCeEEEEeCC-------------
Confidence 74211 134788887655444443211 1112244444 7889987432
Q ss_pred cCCcEEEEECCCC
Q 006473 329 FLNELYGFQLDNH 341 (643)
Q Consensus 329 ~~ndl~~yd~~t~ 341 (643)
.+.|+++++...
T Consensus 579 -~~~I~~~d~dG~ 590 (791)
T 3m0c_C 579 -LHSISSIDVNGG 590 (791)
T ss_dssp -TTEEEEEETTSC
T ss_pred -CCcEEEEecCCC
Confidence 356888888653
No 309
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=37.15 E-value=3.3e+02 Score=27.18 Aligned_cols=174 Identities=10% Similarity=0.041 Sum_probs=98.3
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
+.++++++.......+... ...-.+++.. ++.||+.--. .+.++++++.....+.+...++..
T Consensus 53 ~~I~~i~~~g~~~~~~~~~----~~~~~~l~~d~~~~~ly~~D~~-----------~~~I~r~~~~g~~~~~~~~~~~~~ 117 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNN----LENAIALDFHHRRELVFWSDVT-----------LDRILRANLNGSNVEEVVSTGLES 117 (349)
T ss_dssp SCEEEECTTSCCEEEEECS----CSCEEEEEEETTTTEEEEEETT-----------TTEEEEEETTSCSCEEEECSSCSC
T ss_pred cceEEEeCCCCeeEEeecC----CCceEEEEEeccccEEEEEecc-----------CCceEEEecCCCCceEEEeCCCCC
Confidence 4688889888877766432 1223444443 6889987432 256899999887666554333222
Q ss_pred CCceeEEEE--ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCC
Q 006473 179 PRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGY 254 (643)
Q Consensus 179 ~Rs~h~~~~--~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~ 254 (643)
| .++++ .++.||+.-.. .+.++++++....-..+... ....|+ .+++. ++.||+.-..
T Consensus 118 p---~glavd~~~g~ly~~d~~---------~~~I~~~~~dG~~~~~l~~~---~l~~P~---~iavdp~~g~ly~td~~ 179 (349)
T 3v64_C 118 P---GGLAVDWVHDKLYWTDSG---------TSRIEVANLDGAHRKVLLWQ---SLEKPR---AIALHPMEGTIYWTDWG 179 (349)
T ss_dssp C---CEEEEETTTTEEEEEETT---------TTEEEEEETTSCSCEEEECT---TCSCEE---EEEEETTTTEEEEEECS
T ss_pred c---cEEEEecCCCeEEEEcCC---------CCeEEEEcCCCCceEEEEeC---CCCCcc---eEEEecCcCeEEEeccC
Confidence 2 23444 37889886431 35788888875543333221 112232 33443 7788887532
Q ss_pred CCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--CCeEEEeccccccccCccccccccCCc
Q 006473 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (643)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~nd 332 (643)
. ...++++++....-..+...+ ...-.++++- +++||+.-.. .+.
T Consensus 180 ~---------------~~~I~r~~~dG~~~~~~~~~~----~~~PnGla~d~~~~~lY~aD~~--------------~~~ 226 (349)
T 3v64_C 180 N---------------TPRIEASSMDGSGRRIIADTH----LFWPNGLTIDYAGRRMYWVDAK--------------HHV 226 (349)
T ss_dssp S---------------SCEEEEEETTSCSCEESCCSS----CSCEEEEEEETTTTEEEEEETT--------------TTE
T ss_pred C---------------CCEEEEEeCCCCCcEEEEECC----CCCcceEEEeCCCCEEEEEECC--------------CCE
Confidence 2 134888887654433332211 1122345554 7888887432 356
Q ss_pred EEEEECCC
Q 006473 333 LYGFQLDN 340 (643)
Q Consensus 333 l~~yd~~t 340 (643)
|+++|++.
T Consensus 227 I~~~~~dG 234 (349)
T 3v64_C 227 IERANLDG 234 (349)
T ss_dssp EEEEETTS
T ss_pred EEEEeCCC
Confidence 88888764
No 310
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=35.60 E-value=3.7e+02 Score=27.29 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=13.1
Q ss_pred CceeEEEEE-CCEEEEEee
Q 006473 180 RSGHRMVLY-KHKIIVFGG 197 (643)
Q Consensus 180 Rs~h~~~~~-~~~lyvfGG 197 (643)
-..|++++. ++.||.+|-
T Consensus 167 G~~hs~alt~~G~v~~wG~ 185 (389)
T 3kci_A 167 GGAHSACVTAAGDLYTWGK 185 (389)
T ss_dssp CSSEEEEEETTSCEEEEEC
T ss_pred CcCeEEEEeCCCeEEEeCC
Confidence 345777666 679999984
No 311
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=33.33 E-value=2.1e+02 Score=32.04 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=71.7
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEE--ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~--~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
+.|+++++....-+.+.......|+ .+++ .++.||+.--. ....|+++++....-..+....+.
T Consensus 475 ~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~----------~~~~I~~~~~dG~~~~~l~~~~l~- 540 (699)
T 1n7d_A 475 GTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG----------TPAKIKKGGLNGVDIYSLVTENIQ- 540 (699)
T ss_dssp SCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS----------SSCCEEBCCSSSCCCCEESCSSCS-
T ss_pred CeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC----------CCCeEEEEeCCCCCeeEEEeCCCC-
Confidence 4678888877655555432222232 2233 25677775411 014577777654433333221111
Q ss_pred CCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCC
Q 006473 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSK 256 (643)
Q Consensus 179 ~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~ 256 (643)
.-.++++- +++||+.=. ..+.|++|++....-..+.... . .....+++++..+.||+.-....
T Consensus 541 --~PnGlavd~~~~~LY~aD~---------~~~~I~~~d~dG~~~~~~~~~~-~---~~~~P~glavd~~~lywtd~~~~ 605 (699)
T 1n7d_A 541 --WPNGITLDLLSGRLYWVDS---------KLHSISSIDVNGGNRKTILEDE-K---RLAHPFSLAVFEDKVFWTDIINE 605 (699)
T ss_dssp --SCCCEEECTTTCCEEEEET---------TTTEEEEECSSSSCCEEECCCS-S---SCSSCCCCEEETTEEEEECSTTT
T ss_pred --CccEEEEeccCCEEEEEec---------CCCeEEEEccCCCceEEEEecC-C---cCCCceEeEEECCEEEEEeCCCC
Confidence 11234443 578887632 1467889988654333333221 1 11223456667889998874433
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCee
Q 006473 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (643)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (643)
.|+++++.+.+-
T Consensus 606 ----------------~V~~~d~~~G~~ 617 (699)
T 1n7d_A 606 ----------------AIFSANRLTGSD 617 (699)
T ss_dssp ----------------CEEEEETTTEEE
T ss_pred ----------------eEEEEEccCCCc
Confidence 377888765543
No 312
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=33.31 E-value=3.6e+02 Score=26.52 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=31.7
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~ 213 (643)
++.+.+.||.. ..+.++|..+++-...-. .+.+ -.++....+.+++.. -+.+.+
T Consensus 70 ~~~~~~~~~~d-----------~~v~iWd~~~~~~~~~~~--~~~~--v~~v~~~~~~~~~~~-----------~~~i~i 123 (355)
T 3vu4_A 70 TNYVAFVTGVK-----------EVVHIWDDVKKQDVSRIK--VDAP--VKDLFLSREFIVVSY-----------GDVISV 123 (355)
T ss_dssp SSEEEEECSST-----------TEEEEEETTTTEEEEEEE--CSSC--EEEEEECSSEEEEEE-----------TTEEEE
T ss_pred CCEEEEEECCc-----------cEEEEEECCCCcEEEEEE--CCCc--eEEEEEcCCEEEEEE-----------cCEEEE
Confidence 45666777642 368889988876543221 1221 112222344444432 245888
Q ss_pred EEcCCC
Q 006473 214 FDLDQF 219 (643)
Q Consensus 214 yD~~t~ 219 (643)
||+.+.
T Consensus 124 ~d~~~~ 129 (355)
T 3vu4_A 124 FKFGNP 129 (355)
T ss_dssp EESSTT
T ss_pred EECCCC
Confidence 888765
No 313
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=32.25 E-value=4.2e+02 Score=26.99 Aligned_cols=177 Identities=8% Similarity=0.029 Sum_probs=93.2
Q ss_pred ccEEEEECCCC----cEEEecCCCCCCCceeeEEEE--ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccC
Q 006473 101 GDLYRYDVEKQ----EWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK 174 (643)
Q Consensus 101 ndv~~yd~~~~----~W~~l~s~~~P~pRs~ha~~~--~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~ 174 (643)
+.|+++++... ....+.... ...-..+++ .++.||+.-.. .+.++++++....-..+...
T Consensus 134 ~~I~~~~~~g~~~~~~~~~~~~~~---~~~p~glavD~~~~~lY~~d~~-----------~~~I~~~~~~g~~~~~l~~~ 199 (400)
T 3p5b_L 134 RMICSTQLDRAHGVSSYDTVISRD---IQAPDGLAVDWIHSNIYWTDSV-----------LGTVSVADTKGVKRKTLFRE 199 (400)
T ss_dssp TEEEEEEC------CCCEEEECSS---CSCEEEEEEETTTTEEEEEETT-----------TTEEEEECTTTCSEEEEEEC
T ss_pred CeEEEEEcccCCCCCcceEEEeCC---CCCcccEEEEecCCceEEEECC-----------CCeEEEEeCCCCceEEEEeC
Confidence 35777877652 223332211 112223333 37899998542 24688899887665555432
Q ss_pred CCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEE
Q 006473 175 GCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFL 250 (643)
Q Consensus 175 g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv 250 (643)
++..| .+.++. +++||+.-- +. ...|+++++....=..+... ....| .++++. ++.||+
T Consensus 200 ~~~~P---~~iavdp~~g~ly~td~----~~----~~~I~~~~~dG~~~~~~~~~---~l~~P---~glavd~~~~~lY~ 262 (400)
T 3p5b_L 200 NGSKP---RAIVVDPVHGFMYWTDW----GT----PAKIKKGGLNGVDIYSLVTE---NIQWP---NGITLDLLSGRLYW 262 (400)
T ss_dssp SSCCE---EEEEEETTTTEEEEEEC----SS----SCCEEEEETTSCSCEEEECS---SCSCE---EEEEEETTTTEEEE
T ss_pred CCCCc---ceEEEecccCeEEEEeC----CC----CCEEEEEeCCCCccEEEEEC---CCCce---EEEEEEeCCCEEEE
Confidence 22222 234443 678887531 10 24688888865433333211 00111 223333 788998
Q ss_pred EcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe-ccCCCCCCCceeeEEEEECCeEEEeccccccccCcccccccc
Q 006473 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV-KKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLF 329 (643)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l-~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~ 329 (643)
.-... ..|+++|+....-..+ ...+. ....+++++.++.||+.--.
T Consensus 263 aD~~~----------------~~I~~~d~dG~~~~~~~~~~~~---l~~P~gl~v~~~~lywtd~~-------------- 309 (400)
T 3p5b_L 263 VDSKL----------------HSISSIDVNGGNRKTILEDEKR---LAHPFSLAVFEDKVFWTDII-------------- 309 (400)
T ss_dssp EETTT----------------TEEEEEETTSCCCEEEEECSST---TSSEEEEEEETTEEEEEESS--------------
T ss_pred EECCC----------------CEEEEEeCCCCccEEEEeCCCC---CCCCEEEEEeCCEEEEecCC--------------
Confidence 74432 3488888765433333 22111 22345777889999987632
Q ss_pred CCcEEEEECCCC
Q 006473 330 LNELYGFQLDNH 341 (643)
Q Consensus 330 ~ndl~~yd~~t~ 341 (643)
.+.|+++|..+.
T Consensus 310 ~~~V~~~~~~~G 321 (400)
T 3p5b_L 310 NEAIFSANRLTG 321 (400)
T ss_dssp SCSEEEEESSSC
T ss_pred CCeEEEEEcCCC
Confidence 356888886544
No 314
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=32.21 E-value=5.7e+02 Score=28.52 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=50.1
Q ss_pred CCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEE
Q 006473 165 TNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV 243 (643)
Q Consensus 165 t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~ 243 (643)
-.+|+.+.. +|.....|.+++. .+.||+..+-............||+++-...+|+.+.+.+... +..+++++.+.
T Consensus 231 G~tW~~~~~--~p~~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~-~~~~~~~~~i~ 307 (737)
T 2cn3_A 231 GVTWKAVPG--QPKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSS-SDNRFCFAGLA 307 (737)
T ss_dssp TSCCEECTT--CCCSSEEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTS-TTCCSEEEEEE
T ss_pred CCceEECCC--CCCcccceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCCCC-cccccccccEE
Confidence 457999873 5665555655543 7788887542110000002357899999999999998763311 12345554333
Q ss_pred e----CCEEEEEcC
Q 006473 244 Y----QDEVFLYGG 253 (643)
Q Consensus 244 ~----~~~iyv~GG 253 (643)
+ .+.||+.+.
T Consensus 308 v~p~~~~~ly~~~~ 321 (737)
T 2cn3_A 308 VDRQNPDIIMVTSM 321 (737)
T ss_dssp ECTTCTTCEEEEEE
T ss_pred EcCCCCCEEEEEec
Confidence 3 457777754
No 315
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=31.10 E-value=5.3e+02 Score=30.65 Aligned_cols=159 Identities=13% Similarity=0.104 Sum_probs=82.4
Q ss_pred CCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCC---CCCCCceeeEEEEE---CCEEEEEeC
Q 006473 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSP---NSPPPRSAHQAVSW---KNYLYIFGG 142 (643)
Q Consensus 69 R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~---~~P~pRs~ha~~~~---~~~iyvfGG 142 (643)
-.|++.... .+.+ |+|.- |. ......++.|......|-..... .......|+++++. +...||+|-
T Consensus 334 q~GfSa~~t---~d~~-~~Gap---G~-~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GA 405 (1095)
T 3k6s_A 334 QEGFSAVFT---PDGP-VLGAV---GS-FTWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGA 405 (1095)
T ss_dssp CTTSSEECC---TTCC-EEEES---CS-TTTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEE
T ss_pred cccccceec---CCcc-eEccc---cc-CCccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEc
Confidence 356666665 3334 77753 11 11224567777765544322211 11223346666553 334567763
Q ss_pred ccCCCCCCcceecCeEEEEECCCCcEEEecc-CCC-CCCCceeEEEEEC------CEEEEEeeeecCCCceeeeccEEEE
Q 006473 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNL-KGC-PSPRSGHRMVLYK------HKIIVFGGFYDTLREVRYYNDLYVF 214 (643)
Q Consensus 143 ~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~-~g~-P~~Rs~h~~~~~~------~~lyvfGG~~~~~~~~~~~~dv~~y 214 (643)
-. ..+...+++|......|..... .+. .....|++.++.+ .-||++|.-..... .....+|+|
T Consensus 406 P~-------~~~~G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~--~~~G~Vyvy 476 (1095)
T 3k6s_A 406 PR-------YQHTGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQ--TRGGQVSVC 476 (1095)
T ss_dssp TT-------GGGTCEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSS--CCCBCEEEE
T ss_pred cc-------ccccceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCc--CCCCEEEEE
Confidence 21 1235678899888778876542 221 3445677777641 24667764321110 123568888
Q ss_pred EcCC--CceEEeccCCCCCC-CCCccceeEEEe
Q 006473 215 DLDQ--FKWQEIKPRFGSMW-PSPRSGFQFFVY 244 (643)
Q Consensus 215 D~~t--~~W~~v~~~~~~~~-P~~R~~~s~~~~ 244 (643)
.... ..|........... +..|+|++++.+
T Consensus 477 ~~~~~~~~~~~~~~l~g~~~~~~~~FG~sva~~ 509 (1095)
T 3k6s_A 477 PLPRGWRRWWCDAVLYGEQGHPWGRFGAALTVL 509 (1095)
T ss_dssp ECCSSTTCCCSCSSCCCCCSCSSCCBTSCEEEE
T ss_pred EeCCCCcceeeeEEeecccCCccccCccceEee
Confidence 5433 45775433322221 467889888875
No 316
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=30.88 E-value=79 Score=32.28 Aligned_cols=108 Identities=13% Similarity=0.025 Sum_probs=49.5
Q ss_pred CeEEEEECCCC--cEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCC
Q 006473 156 KDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (643)
Q Consensus 156 ~dv~~yD~~t~--~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (643)
..++.+|..++ .|+.-.....|.-...+.....++.+|++..+. -..|+.|+..+..|......+.-..-
T Consensus 20 G~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~--------dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 20 GGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFG--------DGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp SCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCST--------TTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred CeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECC--------CCEEEEEECCCCcEEeeeccccceec
Confidence 35778887776 487543200111000000001244566554321 23578888777665432222100001
Q ss_pred CCccceeEEEe-------CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEe
Q 006473 234 SPRSGFQFFVY-------QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKV 287 (643)
Q Consensus 234 ~~R~~~s~~~~-------~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l 287 (643)
.|..+.+..++ .+..+++|++++. ++.+|+.+. .|+.-
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~----------------l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTI----------------MYTINMLNGEIISAFG 138 (339)
T ss_dssp CSEEEECC----------CCEEEEECEEEEE----------------EEEEETTTCCEEEEES
T ss_pred cccccCCCceeecccccccCCEEEEEecCCE----------------EEEEECCCCcEEEEEe
Confidence 11111111222 5666667776544 889998776 46654
No 317
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=30.51 E-value=4.9e+02 Score=27.20 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=13.6
Q ss_pred CceEEEEeccCCCEEEEEcc
Q 006473 70 SNCSLNINPLKETELILYGG 89 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG 89 (643)
..|++++.. +++||.+|-
T Consensus 76 ~~Ht~alt~--~G~v~~wG~ 93 (473)
T 3of7_A 76 GMHTLALDE--ESNVWSWGC 93 (473)
T ss_dssp SSEEEEEET--TCCEEEEEC
T ss_pred CCeEEEEec--CCeEEEeEC
Confidence 367777664 789999995
No 318
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=29.58 E-value=18 Score=34.38 Aligned_cols=8 Identities=25% Similarity=0.929 Sum_probs=5.1
Q ss_pred hhccccCC
Q 006473 506 EWVEASEG 513 (643)
Q Consensus 506 ~w~~~~~~ 513 (643)
.|+.+.++
T Consensus 149 ~WL~EAEE 156 (208)
T 2iu1_A 149 KWLKEAEE 156 (208)
T ss_dssp HHHHCSSC
T ss_pred HHHHcccc
Confidence 59876443
No 319
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=28.29 E-value=6.2e+02 Score=27.71 Aligned_cols=181 Identities=8% Similarity=-0.018 Sum_probs=100.5
Q ss_pred CceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEE--ECCEEEEEeCccCCC
Q 006473 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTSP 147 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~--~~~~iyvfGG~~~~~ 147 (643)
...++.+.+. ++.||+.--. .+.++++++.......+....... -..+++ .++.||+.-..
T Consensus 38 ~~~~l~~d~~-~~~lywtD~~---------~~~I~r~~~~g~~~~~v~~~g~~~---P~GlAvD~~~~~LY~tD~~---- 100 (628)
T 4a0p_A 38 EASALDFDVT-DNRIYWTDIS---------LKTISRAFMNGSALEHVVEFGLDY---PEGMAVDWLGKNLYWADTG---- 100 (628)
T ss_dssp CEEEEEEETT-TTEEEEEETT---------TTEEEEEETTSCSCEEEECSSCSC---CCEEEEETTTTEEEEEETT----
T ss_pred ceEEEEEECC-CCEEEEEECC---------CCeEEEEECCCCCcEEEEeCCCCC---cceEEEEeCCCEEEEEECC----
Confidence 4455556543 5788887541 247889998877666554322111 123333 37899997432
Q ss_pred CCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
.+.++++++....=+.+....+..| ..+++. ++.||+.-- +. ...|+++++....-..+.
T Consensus 101 -------~~~I~v~~~dG~~~~~l~~~~l~~P---~~iavdp~~G~lY~tD~----g~----~~~I~r~~~dG~~~~~l~ 162 (628)
T 4a0p_A 101 -------TNRIEVSKLDGQHRQVLVWKDLDSP---RALALDPAEGFMYWTEW----GG----KPKIDRAAMDGSERTTLV 162 (628)
T ss_dssp -------TTEEEEEETTSTTCEEEECSSCCCE---EEEEEETTTTEEEEEEC----SS----SCEEEEEETTSCSCEEEE
T ss_pred -------CCEEEEEecCCCcEEEEEeCCCCCc---ccEEEccCCCeEEEeCC----CC----CCEEEEEeCCCCceEEEE
Confidence 3578999987654333332223333 244444 678987631 10 357888888765544443
Q ss_pred cCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEE
Q 006473 226 PRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (643)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~ 303 (643)
.. ...| .++++. ++.||+.=... +.++++++....=+.+... .+ .-++++
T Consensus 163 ~~----~~~P---~GlalD~~~~~LY~aD~~~----------------~~I~~~d~dG~~~~v~~~~--l~---~P~gla 214 (628)
T 4a0p_A 163 PN----VGRA---NGLTIDYAKRRLYWTDLDT----------------NLIESSNMLGLNREVIADD--LP---HPFGLT 214 (628)
T ss_dssp CS----CSSE---EEEEEETTTTEEEEEETTT----------------TEEEEEETTSCSCEEEEEC--CS---CEEEEE
T ss_pred CC----CCCc---ceEEEccccCEEEEEECCC----------------CEEEEEcCCCCceEEeecc--CC---CceEEE
Confidence 21 1222 123333 68899875433 3478888755322333221 12 235777
Q ss_pred EECCeEEEec
Q 006473 304 VHKKRALLFG 313 (643)
Q Consensus 304 ~~~~~iyvfG 313 (643)
+.+++||+.-
T Consensus 215 v~~~~ly~tD 224 (628)
T 4a0p_A 215 QYQDYIYWTD 224 (628)
T ss_dssp EETTEEEEEE
T ss_pred EECCEEEEec
Confidence 8888998875
No 320
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=28.09 E-value=5.6e+02 Score=28.73 Aligned_cols=153 Identities=13% Similarity=0.095 Sum_probs=78.9
Q ss_pred CeEEEEECCC--CcEEEeccCCCCCCCceeEEEEECCEEEEEeeee--cCCCceeeeccEEEEEcCC--------CceEE
Q 006473 156 KDFWMLDLKT--NQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFY--DTLREVRYYNDLYVFDLDQ--------FKWQE 223 (643)
Q Consensus 156 ~dv~~yD~~t--~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~--~~~~~~~~~~dv~~yD~~t--------~~W~~ 223 (643)
+.+|..+... ..|..+.. |. ...+ ....++.+|++...+ ..+ ..-....|..+|+.+ ..|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~---~~-~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 342 (711)
T 4hvt_A 269 YDNYILDTKYKNLKLQKINM---PS-DATL-QGSFKEYVFWLLRSDWKFKS-HNIKAGSLVALHFTDLLKTESDKTSLKI 342 (711)
T ss_dssp EEEEEEECSSSSCEEEECCS---CT-TCEE-EEEETTEEEEECSSCEEETT-EEECTTCEEEEEGGGGGSCGGGCTTCEE
T ss_pred eeEEEEcCCCCCCcceEeec---CC-cceE-eeeECCEEEEEECccccccc-ccCCCCeEEEEECCcccccccccccceE
Confidence 5677777653 56777632 32 2222 345688999976322 100 011245788888765 36887
Q ss_pred eccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEE
Q 006473 224 IKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (643)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~ 303 (643)
+-.. -..+.--.+...++.||+..-.. ....++++++.+..|....... .|.. ...+..
T Consensus 343 ~~~~-----~~~~~l~~~~~~~~~l~~~~~~~--------------~~~~l~~~~~~~g~~~~~~~i~-lp~~-~~~~~~ 401 (711)
T 4hvt_A 343 LFTP-----TANEVFNFISTTKDRVFLATYDN--------------VVAKVVTFTLENEQWTKPVVLK-LPYQ-NAIFGM 401 (711)
T ss_dssp EECC-----CTTEEEEEEEECSSCEEEEEEET--------------TEEEEEEECEETTEECCCEEEC-CCST-TCEEEE
T ss_pred EECC-----CCCCeEEEEEEECCEEEEEEEEC--------------CEEEEEEEECCCCceEEEeccC-CCCC-eEEEEE
Confidence 4322 12223334444567776654322 2345888888777774322011 1221 111221
Q ss_pred E--E-CCeEEE-eccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 304 V--H-KKRALL-FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 304 ~--~-~~~iyv-fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
. . ++.+++ +.+.. ....+|.||+. ..+..+..
T Consensus 402 ~~~~~~~~~~~~~ss~~------------~P~~~~~~d~~-~~~~~l~~ 437 (711)
T 4hvt_A 402 SSYEEEEEALITIENSI------------VPPTIYLWVKT-HELKIIRK 437 (711)
T ss_dssp ECCTTCSCEEEEEECSS------------SCCEEEEECTT-SCEEEEEC
T ss_pred eecCcCCEEEEEEecCC------------CCCEEEEEeCC-CcEEEEec
Confidence 1 1 233333 33332 25679999988 77776654
No 321
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=26.31 E-value=7.1e+02 Score=27.72 Aligned_cols=85 Identities=14% Similarity=0.226 Sum_probs=48.8
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCC-CC
Q 006473 218 QFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP-PG 295 (643)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~-P~ 295 (643)
-.+|+.+... |.....|.+++. ++.+|+..+-.... ..+.....+|+++-...+|+.+...... +.
T Consensus 231 G~tW~~~~~~-----p~~~~~~~~~~~~~~~l~~~~~d~~g~-------y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~~ 298 (737)
T 2cn3_A 231 GVTWKAVPGQ-----PKGLLPHHGVLASNGMLYITYGDTCGP-------YDGNGKGQVWKFNTRTGEWIDITPIPYSSSD 298 (737)
T ss_dssp TSCCEECTTC-----CCSSEEEEEEECTTSEEEEEEESSCCS-------SCCSCCEEEEEEETTTCCEEECCSSCTTSTT
T ss_pred CCceEECCCC-----CCcccceEEEECCCCeEEEEecCCCCc-------cccccCceEEEEeCCCCCEEEccCCCCCCcc
Confidence 4579998754 444344445544 77888865422110 0011345689999999999998763111 12
Q ss_pred CceeeEEEEE----CCeEEEecc
Q 006473 296 PRAGFSMCVH----KKRALLFGG 314 (643)
Q Consensus 296 ~R~g~s~~~~----~~~iyvfGG 314 (643)
.+++++.+.+ .+.||+.+.
T Consensus 299 ~~~~~~~i~v~p~~~~~ly~~~~ 321 (737)
T 2cn3_A 299 NRFCFAGLAVDRQNPDIIMVTSM 321 (737)
T ss_dssp CCSEEEEEEECTTCTTCEEEEEE
T ss_pred cccccccEEEcCCCCCEEEEEec
Confidence 3566653333 266777764
No 322
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=26.13 E-value=1.8e+02 Score=29.59 Aligned_cols=105 Identities=10% Similarity=0.010 Sum_probs=51.3
Q ss_pred ccEEEEECCCC--cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEecc-CCC-
Q 006473 101 GDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL-KGC- 176 (643)
Q Consensus 101 ndv~~yd~~~~--~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~-~g~- 176 (643)
+.||.+|..++ .|+.-.....|+--..+.....++.+|++.... -..++.||..++.|.--.. ..+
T Consensus 20 G~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~----------dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 20 GGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFG----------DGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp SCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCST----------TTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECC----------CCEEEEEECCCCcEEeeeccccce
Confidence 47899998877 588644311111110000111244666654211 1457888888776542111 001
Q ss_pred -CCCCceeEEEEE-------CCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEe
Q 006473 177 -PSPRSGHRMVLY-------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEI 224 (643)
Q Consensus 177 -P~~Rs~h~~~~~-------~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v 224 (643)
-+|..+.+.-++ .+-.+++|+. ...++.+|+.+++ |+.-
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~---------~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSM---------RTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEE---------EEEEEEEETTTCCEEEEES
T ss_pred eccccccCCCceeecccccccCCEEEEEec---------CCEEEEEECCCCcEEEEEe
Confidence 122222222223 4555556665 3568899988876 6654
No 323
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=25.95 E-value=7.4e+02 Score=27.78 Aligned_cols=228 Identities=14% Similarity=0.198 Sum_probs=111.0
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCC----C----CCceeeEEEEE---CCEEEEE
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS----P----PPRSAHQAVSW---KNYLYIF 140 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~----P----~pRs~ha~~~~---~~~iyvf 140 (643)
+++++.|.+.+.+|+-+- ..-||+-.-...+|+.+..... | .....+++++. .+.||+.
T Consensus 24 ~~i~~~p~~~~~~y~~~~----------~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~ 93 (763)
T 3a0f_A 24 SGLVAHPTEKDLIYARTD----------IGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLA 93 (763)
T ss_dssp EEEEECSSSTTCEEEEES----------SSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEE
T ss_pred eEEEeCCCCCCEEEEEec----------cCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEE
Confidence 566667754455555432 1257887777789999865210 1 11223333332 3689987
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEeccCC-CC---CCCc-eeEEEEE---CCEEEEEeeeecCCCceeeeccEE
Q 006473 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CP---SPRS-GHRMVLY---KHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P---~~Rs-~h~~~~~---~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
.|..... . ....|++=.=.-.+|+.+.... .+ ..|. ++.+++. .+.+|+.+. ...||
T Consensus 94 ~g~~~~~-~----~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~----------~~~l~ 158 (763)
T 3a0f_A 94 QGDYVQW-D----PWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSR----------TQGLW 158 (763)
T ss_dssp ECSCTTT-C----SCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECS----------SSCEE
T ss_pred ecccccC-C----CCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeC----------CCcEE
Confidence 7642211 1 1234444433456899886421 11 1232 2345554 356777531 12333
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEe----CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEec
Q 006473 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY----QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (643)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (643)
+=.=.-.+|+.+...+.. .....+...+.+ .+.||+.....+ .+++=.=...+|+.+.
T Consensus 159 ~S~DgG~TW~~~~~~~~~--~~~~~~~~~i~~~p~~~~~~~~~~~~~g----------------~v~~S~DgG~tW~~~~ 220 (763)
T 3a0f_A 159 RSTDRAQTWSRMNQLPDS--STYGIGIISVIFDPKNVGTAYVASHAVG----------------GLWVTWDGGANWSQVG 220 (763)
T ss_dssp EESSTTSSCEECTTSCCC--SCTTTCEEEEEECSSSTTCEEEEESSTT----------------CEEEESSSSSSCEECT
T ss_pred EECCCCcCccccccCccc--CCCccceEEEEECCCCCCEEEEEEeCCC----------------eEEEECCCCCCccccC
Confidence 322224679998755321 111222222222 345666543210 1333333455899986
Q ss_pred cCCCCC-----------------CCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 289 KIGMPP-----------------GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 289 ~~g~~P-----------------~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
...... .++..+.+++. ++.+|+......... ......||+++-...+|..+..
T Consensus 221 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~------~~~~g~v~rS~D~G~tW~~~~~ 292 (763)
T 3a0f_A 221 GQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGPW------GVLYGEVWSYDPTNGNWKHITP 292 (763)
T ss_dssp TCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEESSCSSS------CCCCEEEEEEETTTTEEEECCT
T ss_pred CCccccccccccccccccccccCCCCcceeEEECCCCcEEEEeccCCCCC------CCcceeEEEEeCCCCceEECCC
Confidence 321100 23444555444 578888742110000 0113468888878889998764
No 324
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=25.77 E-value=5.6e+02 Score=26.35 Aligned_cols=143 Identities=10% Similarity=0.052 Sum_probs=71.6
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~ 150 (643)
..+++.|..++.||+.-- + +.|++||+..+....+... ..+-.+-++.. ++.||+.......
T Consensus 140 ~~lavdp~~~g~Lyv~d~----~------~~I~~id~~~~~v~~~~~~---~~~P~~ia~d~~G~~lyvad~~~~~---- 202 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGE----Q------HPTRLIDFEKEYVSTVYSG---LSKVRTICWTHEADSMIITNDQNNN---- 202 (430)
T ss_dssp CEEEEETTEEEEEEEEEB----T------EEEEEEETTTTEEEEEECC---CSCEEEEEECTTSSEEEEEECCSCT----
T ss_pred CEEEECCCCCCeEEEEeC----C------CcEEEEECCCCEEEEEecC---CCCcceEEEeCCCCEEEEEeCCCCc----
Confidence 344444311467777643 1 5789999999888877541 22222222222 4569998643221
Q ss_pred cceecCeEEEEECCCCcEE---EeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 151 RFHHYKDFWMLDLKTNQWE---QLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~---~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
....++.++.. ..|. .+.. . ..-|.+++. +++||+.-- ....|++|++.+..-..+.
T Consensus 203 ---~~~~v~~~~~~-g~~~~~~~l~~--~---~~p~giavdp~~g~lyv~d~---------~~~~V~~~~~~~~~~~~~~ 264 (430)
T 3tc9_A 203 ---DRPNNYILTRE-SGFKVITELTK--G---QNCNGAETHPINGELYFNSW---------NAGQVFRYDFTTQETTPLF 264 (430)
T ss_dssp ---TSEEEEEEEGG-GTSCSEEEEEE--C---SSCCCEEECTTTCCEEEEET---------TTTEEEEEETTTTEEEEEE
T ss_pred ---ccceEEEEeCC-Cceeeeeeecc--C---CCceEEEEeCCCCEEEEEEC---------CCCEEEEEECCCCcEEEEE
Confidence 11235556643 2332 2221 1 122444544 567887532 1357999999876553443
Q ss_pred cCCCCCCCCCccceeEEEe--CCEEEEEcCC
Q 006473 226 PRFGSMWPSPRSGFQFFVY--QDEVFLYGGY 254 (643)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~ 254 (643)
..+.. ..|+ .+++. ++.||+.--.
T Consensus 265 ~~~~~--~~P~---gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 265 TIQDS--GWEF---HIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp ECSSS--SCCE---EEEECTTSSEEEEEETT
T ss_pred EcCCC--Ccce---eEEEcCCCCEEEEEECC
Confidence 33111 1122 23333 4458887543
No 325
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=24.52 E-value=7.2e+02 Score=27.19 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=37.2
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCC-CCCceeEEEEE-CCEEEEEeeeecCCCceeeeccE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP-SPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDL 211 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P-~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv 211 (643)
++..++.++.. ..+.+||..+ .+..+. ..++ ..++.|+++.- ++++++.||.+ ..|
T Consensus 96 dG~~LAs~s~d-----------g~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D---------GtV 153 (588)
T 2j04_A 96 IDDWMAVLSNN-----------GNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED---------GEL 153 (588)
T ss_dssp SSSCEEEEETT-----------SCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT---------SEE
T ss_pred CCCEEEEEeCC-----------CcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC---------CEE
Confidence 56666666543 3466777544 555544 2222 23455555443 67777788753 457
Q ss_pred EEEEcCCC
Q 006473 212 YVFDLDQF 219 (643)
Q Consensus 212 ~~yD~~t~ 219 (643)
.+||+.+.
T Consensus 154 kIWd~~~~ 161 (588)
T 2j04_A 154 QFFSIRKN 161 (588)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 78888775
No 326
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=24.26 E-value=5.9e+02 Score=26.06 Aligned_cols=60 Identities=8% Similarity=-0.009 Sum_probs=32.8
Q ss_pred CEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCC
Q 006473 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKG 268 (643)
Q Consensus 190 ~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~ 268 (643)
+.+++.|+.+ ..|.+||+.+..-. .... +....-.+++.. ++..++.|+.++.
T Consensus 162 ~~~las~s~D---------g~v~iwD~~~~~~~-~~~~-----~~~~~v~~v~wspdg~~lasgs~dg~----------- 215 (434)
T 2oit_A 162 PSMVAVCLAD---------GSIAVLQVTETVKV-CATL-----PSTVAVTSVCWSPKGKQLAVGKQNGT----------- 215 (434)
T ss_dssp TTEEEEEETT---------SCEEEEEESSSEEE-EEEE-----CGGGCEEEEEECTTSSCEEEEETTSC-----------
T ss_pred CCEEEEEECC---------CeEEEEEcCCCcce-eecc-----CCCCceeEEEEcCCCCEEEEEcCCCc-----------
Confidence 5677777653 35888888776321 1111 111111222222 6677777877655
Q ss_pred ceeeeEEEEeCC
Q 006473 269 IIHSDLWSLDPR 280 (643)
Q Consensus 269 ~~~~dv~~yd~~ 280 (643)
+.+||+.
T Consensus 216 -----v~iwd~~ 222 (434)
T 2oit_A 216 -----VVQYLPT 222 (434)
T ss_dssp -----EEEECTT
T ss_pred -----EEEEccC
Confidence 7788887
No 327
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=23.49 E-value=5.5e+02 Score=25.42 Aligned_cols=234 Identities=9% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCC---ceeeEEEEE--CCEEEEE
Q 006473 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP---RSAHQAVSW--KNYLYIF 140 (643)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~p---Rs~ha~~~~--~~~iyvf 140 (643)
|..... .+++.|. +..||+..-...........+.|.+||+.+.+-...-....... ..-+.++.. +..||+.
T Consensus 48 ~~g~~p-~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~ 125 (361)
T 2oiz_A 48 PTAFNG-HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQ 125 (361)
T ss_dssp ECCEEE-EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEE
T ss_pred cCCCCC-ceEECCC-CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEE
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEE--eccCCC------CCCCceeEEEEECCEEEEEeeeecCCCc--------
Q 006473 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQ--LNLKGC------PSPRSGHRMVLYKHKIIVFGGFYDTLRE-------- 204 (643)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~--~~~~g~------P~~Rs~h~~~~~~~~lyvfGG~~~~~~~-------- 204 (643)
... ..+.+.+||+.+++-.. ++..+. |.....+.+..-++.+.++.-.......
T Consensus 126 n~~----------~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~ 195 (361)
T 2oiz_A 126 NAS----------PATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQM 195 (361)
T ss_dssp EES----------SSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCC
T ss_pred CCC----------CCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccce
Q ss_pred ---------------------eeeeccEEEEEcCCCceEEecc--------CCCCCCCCCccceeEEEeCCEEEEEcC--
Q 006473 205 ---------------------VRYYNDLYVFDLDQFKWQEIKP--------RFGSMWPSPRSGFQFFVYQDEVFLYGG-- 253 (643)
Q Consensus 205 ---------------------~~~~~dv~~yD~~t~~W~~v~~--------~~~~~~P~~R~~~s~~~~~~~iyv~GG-- 253 (643)
..+...++++|+....-..+.. ...+..|.+....++..-++.+|+...
T Consensus 196 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~ 275 (361)
T 2oiz_A 196 FSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPD 275 (361)
T ss_dssp SCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESS
T ss_pred EcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccC
Q ss_pred ---CCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccC
Q 006473 254 ---YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFL 330 (643)
Q Consensus 254 ---~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ 330 (643)
.... ...+.++++|+.+.+=...-..+. -.+.+...-+.+||+.++ ..
T Consensus 276 ~~~~~~~-----------~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~spdg~~l~v~n~-~~------------- 326 (361)
T 2oiz_A 276 GKEGTHK-----------FPAAEIWVMDTKTKQRVARIPGRD----ALSMTIDQQRNLMLTLDG-GN------------- 326 (361)
T ss_dssp CCTTCTT-----------CCCSEEEEEETTTTEEEEEEECTT----CCEEEEETTTTEEEEECS-SC-------------
T ss_pred CCccccc-----------CCCceEEEEECCCCcEEEEEecCC----eeEEEECCCCCEEEEeCC-Ce-------------
Q ss_pred CcEEEEECCCC--c
Q 006473 331 NELYGFQLDNH--R 342 (643)
Q Consensus 331 ndl~~yd~~t~--~ 342 (643)
|.+||+.+. +
T Consensus 327 --v~v~D~~t~~l~ 338 (361)
T 2oiz_A 327 --VNVYDISQPEPK 338 (361)
T ss_dssp --EEEEECSSSSCE
T ss_pred --EEEEECCCCcce
No 328
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=23.14 E-value=6.2e+02 Score=25.90 Aligned_cols=59 Identities=10% Similarity=-0.022 Sum_probs=32.2
Q ss_pred CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEE
Q 006473 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 135 ~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
+.+++.|+.. ..+.+||+.+..-.. ... + ......++.+ ++..++.|+.+ ..+.
T Consensus 162 ~~~las~s~D-----------g~v~iwD~~~~~~~~-~~~--~-~~~~v~~v~wspdg~~lasgs~d---------g~v~ 217 (434)
T 2oit_A 162 PSMVAVCLAD-----------GSIAVLQVTETVKVC-ATL--P-STVAVTSVCWSPKGKQLAVGKQN---------GTVV 217 (434)
T ss_dssp TTEEEEEETT-----------SCEEEEEESSSEEEE-EEE--C-GGGCEEEEEECTTSSCEEEEETT---------SCEE
T ss_pred CCEEEEEECC-----------CeEEEEEcCCCccee-ecc--C-CCCceeEEEEcCCCCEEEEEcCC---------CcEE
Confidence 5677777653 357788887763221 110 1 1222233444 45666666642 4588
Q ss_pred EEEcC
Q 006473 213 VFDLD 217 (643)
Q Consensus 213 ~yD~~ 217 (643)
+||+.
T Consensus 218 iwd~~ 222 (434)
T 2oit_A 218 QYLPT 222 (434)
T ss_dssp EECTT
T ss_pred EEccC
Confidence 88887
No 329
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=22.94 E-value=5.8e+02 Score=26.51 Aligned_cols=144 Identities=11% Similarity=0.023 Sum_probs=0.0
Q ss_pred CCEEEEEeCccCCCCCCcceec----CeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeec
Q 006473 134 KNYLYIFGGEFTSPNQERFHHY----KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYN 209 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~----~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~ 209 (643)
...+||.-.. . +.+.++|+.+++=..--+.+ ..| +....--+++||+.--...........+
T Consensus 84 ~~~vyV~n~~-----------~~~~~~~VsVID~~t~~vv~~I~vG-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~ 149 (426)
T 3c75_H 84 ARRVYIQDPA-----------HFAAITQQFVIDGSTGRILGMTDGG-FLP--HPVAAEDGSFFAQASTVFERIARGKRTD 149 (426)
T ss_dssp TTEEEEEECT-----------TTCSSEEEEEEETTTTEEEEEEEEC-SSC--EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred CCEEEEECCC-----------cCCCCCeEEEEECCCCEEEEEEECC-CCC--ceEECCCCCEEEEEeccccccccCCCCC
Q ss_pred cEEEEEcCCCceEEeccCCCCCCC--------CCccceeEEEeCCEEEEEcCC-CCCCCCccCCCCCCceeeeEEEEeCC
Q 006473 210 DLYVFDLDQFKWQEIKPRFGSMWP--------SPRSGFQFFVYQDEVFLYGGY-SKEVSTDKNQSEKGIIHSDLWSLDPR 280 (643)
Q Consensus 210 dv~~yD~~t~~W~~v~~~~~~~~P--------~~R~~~s~~~~~~~iyv~GG~-~~~~~~~~~~~~~~~~~~dv~~yd~~ 280 (643)
.|.++|+.+++-..--.. + ..-.+..+..-+..+||..-. ... +.++|+.
T Consensus 150 ~VsviD~~t~~vv~~I~v-----~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~----------------VsVID~~ 208 (426)
T 3c75_H 150 YVEVFDPVTFLPIADIEL-----PDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA----------------VGVVDLE 208 (426)
T ss_dssp EEEEECTTTCCEEEEEEE-----TTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE----------------EEEEETT
T ss_pred EEEEEECCCCcEEEEEEC-----CCccccccCCCcceEEEcCCCCEEEEEecCCCCe----------------EEEEECC
Q ss_pred CCeeEEeccCCCC----CCCceeeEEEEECCeEEEe
Q 006473 281 TWEWSKVKKIGMP----PGPRAGFSMCVHKKRALLF 312 (643)
Q Consensus 281 t~~W~~l~~~g~~----P~~R~g~s~~~~~~~iyvf 312 (643)
+.+-...-..+.. |.....+.++.-+++++++
T Consensus 209 t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V 244 (426)
T 3c75_H 209 GKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARV 244 (426)
T ss_dssp TTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEE
T ss_pred CCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEE
No 330
>1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} SCOP: h.2.1.1
Probab=22.30 E-value=14 Score=23.42 Aligned_cols=13 Identities=38% Similarity=0.726 Sum_probs=10.5
Q ss_pred CCCcHHHHHHhhH
Q 006473 600 PGESLKDFYRRTS 612 (643)
Q Consensus 600 p~e~~~~f~~rt~ 612 (643)
.|++|++||..|+
T Consensus 19 vfdtLk~~Y~k~~ 31 (31)
T 1qey_A 19 VFDTLKDLYKKTT 31 (31)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCC
Confidence 6899999998763
No 331
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=21.55 E-value=2.9e+02 Score=28.55 Aligned_cols=76 Identities=12% Similarity=-0.026 Sum_probs=43.0
Q ss_pred CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CC--EEEEEcCCCCCCCCccCCC
Q 006473 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD--EVFLYGGYSKEVSTDKNQS 265 (643)
Q Consensus 189 ~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~--~iyv~GG~~~~~~~~~~~~ 265 (643)
+++||+.-+..........-+.|+++|+.+.+-..- . +.+..-+++.+. ++ .||+.-+.+
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~--i-----~vg~~~~~lavs~D~~~~ly~tn~~~---------- 353 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK--F-----EMGHEIDSINVSQDEKPLLYALSTGD---------- 353 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE--E-----EEEEEECEEEECSSSSCEEEEEETTT----------
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEE--E-----ECCCCcceEEECCCCCeEEEEEcCCC----------
Confidence 679999743221111111257899999988764332 2 222223344443 33 567755443
Q ss_pred CCCceeeeEEEEeCCCCeeEEe
Q 006473 266 EKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 266 ~~~~~~~dv~~yd~~t~~W~~l 287 (643)
+++.+||..+.+-...
T Consensus 354 ------~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 354 ------KTLYIHDAESGEELRS 369 (386)
T ss_dssp ------TEEEEEETTTCCEEEE
T ss_pred ------CeEEEEECCCCcEEEE
Confidence 3488999988875554
No 332
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=20.32 E-value=6.8e+02 Score=25.34 Aligned_cols=65 Identities=14% Similarity=0.071 Sum_probs=32.4
Q ss_pred CceEEEEeccCCCEEEEEcce-ecCCCCce--eeccE--EEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeC
Q 006473 70 SNCSLNINPLKETELILYGGE-FYNGNKTY--VYGDL--YRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGG 142 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~-~~~g~~~~--~~ndv--~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG 142 (643)
..|++++.. +++||.+|-. ...++... ..... -.-=+.......++.+ ..|+++.. ++.||.+|-
T Consensus 120 ~~hs~alt~--~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G------~~hs~alt~~G~v~~wG~ 190 (413)
T 1a12_A 120 DSHTAALTD--DGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASG------NDHLVMLTADGDLYTLGC 190 (413)
T ss_dssp SSEEEEEET--TSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEEC------SSEEEEEETTSCEEEEEC
T ss_pred CCeEEEEcC--CCcEEEeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEec------CceEEEEcCCCCEEEeeC
Confidence 357777664 6899999952 11111000 00000 0000223344555443 25676666 788999984
Done!