Query 006474
Match_columns 643
No_of_seqs 158 out of 407
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 23:47:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 99.0 2.6E-10 5.7E-15 87.7 3.7 48 526-576 1-48 (48)
2 PLN03212 Transcription repress 98.8 7.1E-09 1.5E-13 105.4 7.2 63 521-586 20-82 (249)
3 smart00717 SANT SANT SWI3, AD 98.7 1.9E-08 4E-13 73.7 5.2 48 526-577 1-48 (49)
4 PF13921 Myb_DNA-bind_6: Myb-l 98.6 4.7E-08 1E-12 77.5 5.1 53 529-586 1-53 (60)
5 PLN03091 hypothetical protein; 98.6 5E-08 1.1E-12 105.7 6.3 63 521-586 9-71 (459)
6 cd00167 SANT 'SWI3, ADA2, N-Co 98.6 6.3E-08 1.4E-12 70.1 4.9 45 528-576 1-45 (45)
7 KOG0048 Transcription factor, 98.2 1.3E-06 2.9E-11 87.4 5.7 57 526-585 9-65 (238)
8 PLN03212 Transcription repress 97.9 8.9E-06 1.9E-10 83.3 4.8 52 525-581 77-128 (249)
9 PLN03091 hypothetical protein; 97.8 2.1E-05 4.5E-10 85.9 4.9 50 525-579 66-115 (459)
10 TIGR01557 myb_SHAQKYF myb-like 97.3 0.00048 1E-08 56.5 5.6 47 524-573 1-51 (57)
11 KOG0457 Histone acetyltransfer 97.1 0.00035 7.6E-09 76.3 4.0 54 527-584 73-127 (438)
12 PF13837 Myb_DNA-bind_4: Myb/S 97.0 0.00072 1.6E-08 56.8 3.5 53 526-578 1-66 (90)
13 KOG0048 Transcription factor, 96.8 0.0015 3.2E-08 65.8 4.8 53 524-581 60-112 (238)
14 KOG0049 Transcription factor, 96.8 0.0012 2.7E-08 75.1 4.5 59 524-586 358-416 (939)
15 KOG0051 RNA polymerase I termi 96.1 0.0062 1.4E-07 69.3 4.8 50 525-580 383-432 (607)
16 KOG0049 Transcription factor, 95.8 0.0053 1.1E-07 70.3 2.7 52 522-577 408-459 (939)
17 PF13873 Myb_DNA-bind_5: Myb/S 95.4 0.019 4.2E-07 47.8 4.0 53 526-578 2-71 (78)
18 COG5114 Histone acetyltransfer 95.0 0.037 8E-07 59.4 5.4 70 528-609 65-136 (432)
19 PF09111 SLIDE: SLIDE; InterP 94.5 0.033 7.1E-07 51.8 3.4 54 525-578 48-112 (118)
20 PF13325 MCRS_N: N-terminal re 94.5 0.033 7.1E-07 56.1 3.6 58 525-582 72-132 (199)
21 KOG0050 mRNA splicing protein 93.1 0.078 1.7E-06 59.8 3.6 57 526-586 7-63 (617)
22 KOG1279 Chromatin remodeling f 91.4 0.23 5E-06 56.1 4.7 48 524-576 251-298 (506)
23 KOG4282 Transcription factor G 91.2 0.3 6.5E-06 51.4 5.0 81 526-613 54-143 (345)
24 PLN03142 Probable chromatin-re 89.6 0.42 9.1E-06 58.1 5.0 54 525-578 925-986 (1033)
25 COG5147 REB1 Myb superfamily p 89.1 0.41 8.8E-06 54.3 4.2 74 525-617 19-92 (512)
26 COG5259 RSC8 RSC chromatin rem 89.0 0.38 8.2E-06 54.0 3.8 47 525-576 278-324 (531)
27 COG5147 REB1 Myb superfamily p 88.8 0.27 5.9E-06 55.6 2.6 49 526-580 291-339 (512)
28 KOG0051 RNA polymerase I termi 81.0 1.7 3.6E-05 50.4 4.1 58 524-585 434-517 (607)
29 PF08074 CHDCT2: CHDCT2 (NUC03 78.6 1.4 3.1E-05 43.8 2.3 48 525-572 2-58 (173)
30 PF08914 Myb_DNA-bind_2: Rap1 78.6 3.3 7.3E-05 35.1 4.2 50 526-578 2-59 (65)
31 PF12776 Myb_DNA-bind_3: Myb/S 74.4 5.1 0.00011 34.2 4.3 50 528-577 1-63 (96)
32 PF11149 DUF2924: Protein of u 73.3 2.5 5.4E-05 40.8 2.3 39 233-271 7-45 (136)
33 KOG2656 DNA methyltransferase 68.6 4 8.7E-05 45.4 2.9 53 527-580 131-189 (445)
34 PF04504 DUF573: Protein of un 68.3 9.8 0.00021 34.3 4.9 55 525-579 3-65 (98)
35 KOG0384 Chromodomain-helicase 66.6 4.3 9.3E-05 50.5 2.9 53 525-577 1132-1192(1373)
36 COG5118 BDP1 Transcription ini 65.7 8.5 0.00018 42.9 4.7 51 523-578 362-412 (507)
37 KOG0050 mRNA splicing protein 40.3 22 0.00049 41.1 2.9 47 525-577 58-104 (617)
38 TIGR01624 LRP1_Cterm LRP1 C-te 37.7 27 0.00058 28.9 2.2 17 30-46 3-19 (50)
39 PF09420 Nop16: Ribosome bioge 29.2 1.1E+02 0.0024 29.7 5.3 52 524-576 112-163 (164)
40 PRK13923 putative spore coat p 27.8 34 0.00074 34.3 1.6 54 525-578 4-58 (170)
41 KOG4468 Polycomb-group transcr 26.2 1.4E+02 0.0029 35.7 6.0 27 525-552 87-113 (782)
42 cd01187 INT_SG4 INT_SG4, DNA b 20.2 1.8E+02 0.0038 29.0 5.0 82 525-611 98-186 (299)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.00 E-value=2.6e-10 Score=87.67 Aligned_cols=48 Identities=35% Similarity=0.610 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhh
Q 006474 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 576 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLl 576 (643)
|.+||+||++.|+++|.+||.++|..|..... .+||..+|+++|++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 57899999999999999999999999995321 4999999999999974
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.81 E-value=7.1e-09 Score=105.39 Aligned_cols=63 Identities=25% Similarity=0.391 Sum_probs=55.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006474 521 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 586 (643)
Q Consensus 521 krRKkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 586 (643)
|.--++.+||+||++.|++.|++||.++|+.|.+.. -.+||+.||++||.|.+++.+..+||-
T Consensus 20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~---g~gRT~KQCReRW~N~L~P~I~kgpWT 82 (249)
T PLN03212 20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRA---GLLRCGKSCRLRWMNYLRPSVKRGGIT 82 (249)
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhh---hcCCCcchHHHHHHHhhchhcccCCCC
Confidence 445568899999999999999999999999998531 158999999999999999999988884
No 3
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.73 E-value=1.9e-08 Score=73.70 Aligned_cols=48 Identities=38% Similarity=0.694 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006474 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 577 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK 577 (643)
+.+||++|++.|+.++.+||.++|..|.. .|.+||..+|+++|+++++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~----~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAK----ELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHH----HcCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999779999984 3569999999999999875
No 4
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.63 E-value=4.7e-08 Score=77.52 Aligned_cols=53 Identities=34% Similarity=0.648 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006474 529 WTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 586 (643)
Q Consensus 529 WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 586 (643)
||.||++.|+.+|++||. +|+.|.. .|++||..+|++||++.+++....+|+.
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~----~l~~Rt~~~~~~r~~~~l~~~~~~~~wt 53 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAE----HLGNRTPKQCRNRWRNHLRPKISRGPWT 53 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHH----HSTTS-HHHHHHHHHHTTSTTSTSSSSS
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHH----HHCcCCHHHHHHHHHHHCcccccCCCcC
Confidence 999999999999999996 9999984 2557999999999999776655545553
No 5
>PLN03091 hypothetical protein; Provisional
Probab=98.60 E-value=5e-08 Score=105.71 Aligned_cols=63 Identities=25% Similarity=0.464 Sum_probs=54.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006474 521 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 586 (643)
Q Consensus 521 krRKkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 586 (643)
|++.++++||+|||+.|++.|++||.++|+.|.+.. -.+||+.+|++||.|.+.+.+..+||-
T Consensus 9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~---g~gRT~KQCRERW~NyLdP~IkKgpWT 71 (459)
T PLN03091 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQA---GLQRCGKSCRLRWINYLRPDLKRGTFS 71 (459)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhh---ccCcCcchHhHHHHhccCCcccCCCCC
Confidence 344567789999999999999999999999998531 258999999999999999999988884
No 6
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.60 E-value=6.3e-08 Score=70.11 Aligned_cols=45 Identities=40% Similarity=0.777 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhh
Q 006474 528 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 576 (643)
Q Consensus 528 ~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLl 576 (643)
+||.+|++.|+.++.+||.++|..|.. .+..||..+|+++|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~----~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAK----ELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHh----HcCCCCHHHHHHHHHHhC
Confidence 599999999999999999889999994 356799999999999874
No 7
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.24 E-value=1.3e-06 Score=87.38 Aligned_cols=57 Identities=19% Similarity=0.377 Sum_probs=51.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCC
Q 006474 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPP 585 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~ 585 (643)
+.+||+|||+.|++-|++||.|+|..|.+... + .|++..|+-||-|.+++.+..+++
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~g--l-~R~GKSCRlRW~NyLrP~ikrg~f 65 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAG--L-RRCGKSCRLRWTNYLRPDLKRGNF 65 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcC--C-CccchHHHHHhhcccCCCccCCCC
Confidence 58999999999999999999999999986432 1 999999999999999999987655
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.94 E-value=8.9e-06 Score=83.26 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccC
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 581 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~ 581 (643)
++.+||.||++.|++.+.+||. +|+.|.+ .|++||..++|.||.++++....
T Consensus 77 ~kgpWT~EED~lLlel~~~~Gn-KWs~IAk----~LpGRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGN-RWSLIAG----RIPGRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccc-cHHHHHh----hcCCCCHHHHHHHHHHHHhHHHH
Confidence 4679999999999999999997 9999984 46899999999999998876543
No 9
>PLN03091 hypothetical protein; Provisional
Probab=97.79 E-value=2.1e-05 Score=85.93 Aligned_cols=50 Identities=26% Similarity=0.456 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 579 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 579 (643)
++.+||.||++.|++.+++||. +|+.|.. .|++||..+||.||..++|..
T Consensus 66 kKgpWT~EED~lLLeL~k~~Gn-KWskIAk----~LPGRTDnqIKNRWnslLKKk 115 (459)
T PLN03091 66 KRGTFSQQEENLIIELHAVLGN-RWSQIAA----QLPGRTDNEIKNLWNSCLKKK 115 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCc-chHHHHH----hcCCCCHHHHHHHHHHHHHHH
Confidence 3568999999999999999998 9999994 368999999999999988754
No 10
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.32 E-value=0.00048 Score=56.47 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCch---hhhhhhhcccCCCC-ChhhHHHHHH
Q 006474 524 KHHRAWTLSEVMKLVEGVSKYGAGRW---SEIKRLAFASYSYR-TSVDLKDKWR 573 (643)
Q Consensus 524 Kkrr~WT~EEveaLv~GVeKyG~G~W---k~Il~~~f~~f~~R-T~VDLKDKWR 573 (643)
|+|..||+||-..+++||+.||.|+| +.|+.... ..| |..+++-...
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~---~~~lT~~qV~SH~Q 51 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMV---VDGLTRDQVASHLQ 51 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcC---CCCCCHHHHHHHHH
Confidence 56889999999999999999999999 99985321 245 8888885543
No 11
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.14 E-value=0.00035 Score=76.27 Aligned_cols=54 Identities=24% Similarity=0.521 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc-cccCCCC
Q 006474 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK-ASLAQTP 584 (643)
Q Consensus 527 r~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK-~s~~q~p 584 (643)
--||.+|+-.|++|++.||.|||.+|++. ...||.-+||+.|.++.- ..+.+-|
T Consensus 73 ~~WtadEEilLLea~~t~G~GNW~dIA~h----IGtKtkeeck~hy~k~fv~s~~~~~~ 127 (438)
T KOG0457|consen 73 PSWTADEEILLLEAAETYGFGNWQDIADH----IGTKTKEECKEHYLKHFVNSPIFPLP 127 (438)
T ss_pred CCCChHHHHHHHHHHHHhCCCcHHHHHHH----HcccchHHHHHHHHHHHhcCcccccc
Confidence 35999999999999999999999999953 458999999999998875 4444444
No 12
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.97 E-value=0.00072 Score=56.85 Aligned_cols=53 Identities=30% Similarity=0.460 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHh------hCC-----C--chhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006474 526 HRAWTLSEVMKLVEGVSK------YGA-----G--RWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeK------yG~-----G--~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 578 (643)
|..||.+|+..|++.+.. |+. + -|..|...-...=-.||+.+|++||.||.+.
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~ 66 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKK 66 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999887 221 2 5999986321111279999999999999984
No 13
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.79 E-value=0.0015 Score=65.75 Aligned_cols=53 Identities=25% Similarity=0.364 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccC
Q 006474 524 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 581 (643)
Q Consensus 524 Kkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~ 581 (643)
=++..||+||++.|+++-..||- +|+.|++ .|++||.-++|.-|...+|..+.
T Consensus 60 ikrg~fT~eEe~~Ii~lH~~~GN-rWs~IA~----~LPGRTDNeIKN~Wnt~lkkkl~ 112 (238)
T KOG0048|consen 60 LKRGNFSDEEEDLIIKLHALLGN-RWSLIAG----RLPGRTDNEVKNHWNTHLKKKLL 112 (238)
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-HHHHHHh----hCCCcCHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999 8999994 57999999999999887765443
No 14
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.78 E-value=0.0012 Score=75.12 Aligned_cols=59 Identities=27% Similarity=0.487 Sum_probs=51.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006474 524 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 586 (643)
Q Consensus 524 Kkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 586 (643)
-++.+||++|+..|+.+|++||.--|.+|. ..|++|+-.||++||-|.+..+....-|.
T Consensus 358 ikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R----~~vPnRSdsQcR~RY~nvL~~s~K~~rW~ 416 (939)
T KOG0049|consen 358 VKHGRWTDQEDVLLVCAVSRYGAKDWAKVR----QAVPNRSDSQCRERYTNVLNRSAKVERWT 416 (939)
T ss_pred ccCCCCCCHHHHHHHHHHHHhCccchhhHH----HhcCCccHHHHHHHHHHHHHHhhccCcee
Confidence 457899999999999999999999999998 34789999999999999998777666553
No 15
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.09 E-value=0.0062 Score=69.27 Aligned_cols=50 Identities=30% Similarity=0.539 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcccc
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 580 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~ 580 (643)
.+..||+||++.|..-|.++|. .|+.|.+. -+|.+.+|+|+||+.++.+-
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~-----lgr~P~~crd~wr~~~~~g~ 432 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKA-----LGRMPMDCRDRWRQYVKCGS 432 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHHH-----HccCcHHHHHHHHHhhcccc
Confidence 5678999999999999999998 99999853 48999999999999999874
No 16
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.81 E-value=0.0053 Score=70.28 Aligned_cols=52 Identities=29% Similarity=0.498 Sum_probs=43.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006474 522 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 577 (643)
Q Consensus 522 rRKkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK 577 (643)
++-+...||..|++.|+..|++||.|+|.+|. ..+++||..|+..+-+.++.
T Consensus 408 ~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA----~~Lp~~t~~q~~rrR~R~~~ 459 (939)
T KOG0049|consen 408 RSAKVERWTLVEDEQLLYAVKVYGKGNWAKCA----MLLPKKTSRQLRRRRLRLIA 459 (939)
T ss_pred HhhccCceeecchHHHHHHHHHHccchHHHHH----HHccccchhHHHHHHHHHHH
Confidence 34556789999999999999999999999998 34789999888777666654
No 17
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.40 E-value=0.019 Score=47.83 Aligned_cols=53 Identities=32% Similarity=0.341 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHhh-----CC-----------CchhhhhhhhcccC-CCCChhhHHHHHHHhhcc
Q 006474 526 HRAWTLSEVMKLVEGVSKY-----GA-----------GRWSEIKRLAFASY-SYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeKy-----G~-----------G~Wk~Il~~~f~~f-~~RT~VDLKDKWRNLlK~ 578 (643)
...||.+|.+.|++-|++| |. ..|..|....-... ..||..+||.+|.||...
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK 71 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999998 31 45999986433332 489999999999999764
No 18
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.97 E-value=0.037 Score=59.43 Aligned_cols=70 Identities=20% Similarity=0.452 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc-cccCCCCCCccccccccCCCCCCCh-HHH
Q 006474 528 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK-ASLAQTPPDSRMGARKHASSVPIPM-PVL 605 (643)
Q Consensus 528 ~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK-~s~~q~p~~~g~~~Rk~~~~~piP~-~lL 605 (643)
-|+..|+-.|+++.+.+|.|||.+|.+. ...|+.-++|+.|-.+.- ...++-|.- . -..++|+ ++|
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIady----iGsr~kee~k~HylK~y~es~~ypl~~i------~--~~~~v~q~~f~ 132 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIADY----IGSRAKEEIKSHYLKMYDESKYYPLPDI------T--QNIHVPQDEFL 132 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHHHH----HhhhhhHHHHHHHHHHHhhccccccccc------c--cCCCCchHHHH
Confidence 5999999999999999999999999953 357999999999988775 344444432 1 2456777 445
Q ss_pred HHHH
Q 006474 606 LRVR 609 (643)
Q Consensus 606 ~RVr 609 (643)
++-|
T Consensus 133 ~qrr 136 (432)
T COG5114 133 EQRR 136 (432)
T ss_pred HHHH
Confidence 5444
No 19
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=94.55 E-value=0.033 Score=51.81 Aligned_cols=54 Identities=28% Similarity=0.477 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC---Cchhhhhhh-------hccc-CCCCChhhHHHHHHHhhcc
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGA---GRWSEIKRL-------AFAS-YSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~---G~Wk~Il~~-------~f~~-f~~RT~VDLKDKWRNLlK~ 578 (643)
..+.||.+||..|+--+.+||. |.|..|+.. .|+- |..||+.+|..|-..|++.
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999 999999863 1222 3699999999999999874
No 20
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=94.52 E-value=0.033 Score=56.12 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=49.8
Q ss_pred CCCCCCHHHHHHHHHHHHhh--CCCchhhhhhhhcccC-CCCChhhHHHHHHHhhccccCC
Q 006474 525 HHRAWTLSEVMKLVEGVSKY--GAGRWSEIKRLAFASY-SYRTSVDLKDKWRNLLKASLAQ 582 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKy--G~G~Wk~Il~~~f~~f-~~RT~VDLKDKWRNLlK~s~~q 582 (643)
.+-+||.+|++.|..+.... +...+.+|+..+...| ..||+.+|.+.|+.|.++...+
T Consensus 72 ~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~ 132 (199)
T PF13325_consen 72 SKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLP 132 (199)
T ss_pred ccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhh
Confidence 56799999999999987776 4578999998887778 6799999999999988877664
No 21
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=93.08 E-value=0.078 Score=59.81 Aligned_cols=57 Identities=26% Similarity=0.467 Sum_probs=49.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006474 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 586 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 586 (643)
-.-|+.-|++.|..+|.+||...|+.|.. .++..|..+|+-+|-..+-+++....|.
T Consensus 7 ggvwrntEdeilkaav~kyg~nqws~i~s----ll~~kt~rqC~~rw~e~ldp~i~~tews 63 (617)
T KOG0050|consen 7 GGVWRNTEDEVLKAAVMKYGKNQWSRIAS----LLNRKTARQCKARWEEWLDPAIKKTEWS 63 (617)
T ss_pred cceecccHHHHHHHHHHHcchHHHHHHHH----HHhhcchhHHHHHHHHHhCHHHhhhhhh
Confidence 34699999999999999999999999984 3568899999999999998888776664
No 22
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=91.44 E-value=0.23 Score=56.14 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=42.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhh
Q 006474 524 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 576 (643)
Q Consensus 524 Kkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLl 576 (643)
.-+..||..|+-.|++||++||. .|.+|.. ....||.-||=.|+..|=
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~----hVg~ks~eqCI~kFL~LP 298 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGD-DWNKVAD----HVGTKSQEQCILKFLRLP 298 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcc-cHHHHHh----ccCCCCHHHHHHHHHhcC
Confidence 35678999999999999999999 9999984 356999999999998764
No 23
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=91.19 E-value=0.3 Score=51.43 Aligned_cols=81 Identities=21% Similarity=0.242 Sum_probs=53.8
Q ss_pred CCCCCHHHHHHHHHHHHhh----CCCc-----hhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCccccccccCC
Q 006474 526 HRAWTLSEVMKLVEGVSKY----GAGR-----WSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHAS 596 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeKy----G~G~-----Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~ 596 (643)
...|+.+|+.+||+...+. ..|+ |..|.+.....=-.||+.+||.||.||.+..-. ... ++...
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~--~k~-----~~~~~ 126 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK--EKA-----KKEGS 126 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH--Hhc-----ccCCC
Confidence 6899999999999987643 4466 999987322222579999999999999985322 100 11001
Q ss_pred CCCCChHHHHHHHHHHh
Q 006474 597 SVPIPMPVLLRVRELAE 613 (643)
Q Consensus 597 ~~piP~~lL~RVreLA~ 613 (643)
...-++.+..++-.|.-
T Consensus 127 ~~~s~~~ff~~le~~~~ 143 (345)
T KOG4282|consen 127 GEGSSWKFFSELEALLI 143 (345)
T ss_pred CCCccchHHHHHHHHHh
Confidence 23446667766666664
No 24
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=89.56 E-value=0.42 Score=58.07 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhh-------hccc-CCCCChhhHHHHHHHhhcc
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRL-------AFAS-YSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~-------~f~~-f~~RT~VDLKDKWRNLlK~ 578 (643)
+.+.||.+|+..|+-.+.+||.|+|..|+.. .|+- |..||+.+|+.|-..|++.
T Consensus 925 ~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~ 986 (1033)
T PLN03142 925 KGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRL 986 (1033)
T ss_pred CCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999752 1222 3799999999999998874
No 25
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=89.11 E-value=0.41 Score=54.28 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=56.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCccccccccCCCCCCChHH
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPIPMPV 604 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~~~piP~~l 604 (643)
+...|+..|++.|..+|++||.-+|+.|.. .|..||+-|++-+|-|.+.+.+..+.+ -.+.
T Consensus 19 k~gsw~~~EDe~l~~~vk~l~~nnws~vas----~~~~~~~kq~~~rw~~~lnp~lk~~~~---------------~~ee 79 (512)
T COG5147 19 KGGSWKRTEDEDLKALVKKLGPNNWSKVAS----LLISSTGKQSSNRWNNHLNPQLKKKNW---------------SEEE 79 (512)
T ss_pred cCCCCCCcchhHHHHHHhhcccccHHHHHH----Hhcccccccccchhhhhhchhcccccc---------------cHHH
Confidence 355899999999999999999999999984 456699999999997776665543333 3445
Q ss_pred HHHHHHHHhhcCC
Q 006474 605 LLRVRELAEMQSQ 617 (643)
Q Consensus 605 L~RVreLA~~~~~ 617 (643)
..++.+|++.++.
T Consensus 80 d~~li~l~~~~~~ 92 (512)
T COG5147 80 DEQLIDLDKELGT 92 (512)
T ss_pred HHHHHHHHHhcCc
Confidence 5556666655443
No 26
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=88.99 E-value=0.38 Score=54.02 Aligned_cols=47 Identities=23% Similarity=0.543 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhh
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 576 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLl 576 (643)
.-.+||.+|.-.|++||++||. .|.+|++ ....+|--||=-|+-+|=
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~----HVgtKt~EqCIl~FL~LP 324 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD-DWDKVAR----HVGTKTKEQCILHFLQLP 324 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh-hHHHHHH----HhCCCCHHHHHHHHHcCC
Confidence 3568999999999999999999 9999994 356999999998887663
No 27
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=88.78 E-value=0.27 Score=55.60 Aligned_cols=49 Identities=33% Similarity=0.589 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcccc
Q 006474 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 580 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~ 580 (643)
+..||.+|+..|..-+.++|. .|+.|... .+|-+.+|.|+||+.++.+.
T Consensus 291 ~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~-----~~rmp~~crd~wr~~~~~g~ 339 (512)
T COG5147 291 RGKWTKEEEQELAKLVVEHGG-SWTEIGKL-----LGRMPNDCRDRWRDYVKCGD 339 (512)
T ss_pred hccCccccccccccccccccc-hhhHhhhh-----hccCcHHHHHHHhhhccccC
Confidence 567999999999999999997 99999853 47999999999999998863
No 28
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=81.02 E-value=1.7 Score=50.39 Aligned_cols=58 Identities=21% Similarity=0.448 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHH-------hh------------------CCCchhhhhhhhcccCCCCChhhHHHHHHHhhc-
Q 006474 524 KHHRAWTLSEVMKLVEGVS-------KY------------------GAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK- 577 (643)
Q Consensus 524 Kkrr~WT~EEveaLv~GVe-------Ky------------------G~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK- 577 (643)
+.+.+||.||++.|++.|+ .| -.-+|..|.. .+..|+.++|+-||-.|+.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse----~~~TR~~~qCr~Kw~kl~~~ 509 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSE----MLGTRSRIQCRYKWYKLTTS 509 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhH----hhcCCCcchHHHHHHHHHhh
Confidence 5688999999999999996 44 1248999985 4679999999999999987
Q ss_pred cccCCCCC
Q 006474 578 ASLAQTPP 585 (643)
Q Consensus 578 ~s~~q~p~ 585 (643)
+++.+.++
T Consensus 510 ~s~n~~~~ 517 (607)
T KOG0051|consen 510 PSFNKRQE 517 (607)
T ss_pred HHhhcccc
Confidence 55555444
No 29
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.65 E-value=1.4 Score=43.77 Aligned_cols=48 Identities=29% Similarity=0.631 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhh-cccC--CCCCh------hhHHHHH
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLA-FASY--SYRTS------VDLKDKW 572 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~-f~~f--~~RT~------VDLKDKW 572 (643)
...-|-..-+-.|+.||-.||-|+|.+|.++. |.++ +-++. -++|.|+
T Consensus 2 ~~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~IiNEPFk~e~~kgnfle~KNkF 58 (173)
T PF08074_consen 2 EYEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAIINEPFKTESQKGNFLEMKNKF 58 (173)
T ss_pred hhhhhhhhhhHHHHhHHhhccchhHHHHhcCCceeeecccccccccccchHHHHHHH
Confidence 34568888899999999999999999999753 3332 22333 4888776
No 30
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=78.58 E-value=3.3 Score=35.07 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCC------Cc--hhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006474 526 HRAWTLSEVMKLVEGVSKYGA------GR--WSEIKRLAFASYSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeKyG~------G~--Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 578 (643)
|.++|.+|+.+|++=|.++.. |+ |+++.... ...+|---++|+|+.-++.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~---~t~HtwQSwR~Ry~K~L~~ 59 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKH---PTRHTWQSWRDRYLKHLRG 59 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS----SSS--SHHHHHHHHHHT--
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhc
Confidence 678999999999999965532 32 76665322 2489999999999876654
No 31
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=74.36 E-value=5.1 Score=34.15 Aligned_cols=50 Identities=26% Similarity=0.389 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHhh-------CCC-----chhhhhhhhcccC-CCCChhhHHHHHHHhhc
Q 006474 528 AWTLSEVMKLVEGVSKY-------GAG-----RWSEIKRLAFASY-SYRTSVDLKDKWRNLLK 577 (643)
Q Consensus 528 ~WT~EEveaLv~GVeKy-------G~G-----~Wk~Il~~~f~~f-~~RT~VDLKDKWRNLlK 577 (643)
.||+++++.|++.+... +.| .|..|.......+ ..-|..+||.||..|.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988654 222 3777775433333 45688999999988876
No 32
>PF11149 DUF2924: Protein of unknown function (DUF2924); InterPro: IPR021322 This entry is represented by Bacteriophage WO, Gp30. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This bacterial family of proteins has no known function.
Probab=73.31 E-value=2.5 Score=40.78 Aligned_cols=39 Identities=26% Similarity=0.575 Sum_probs=36.4
Q ss_pred ccccccHHHHHHHhhhccCcccccchhhHHHHHhhcccc
Q 006474 233 CLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLT 271 (643)
Q Consensus 233 ~LDnLsIrELhE~FratFGReTtVKDK~WLKRrI~mGL~ 271 (643)
-|..|++.||.+.++..||.++---.++||.+||+.-++
T Consensus 7 ~L~~l~~~eL~~~W~~~fg~~pp~~~r~~L~~rlAyriQ 45 (136)
T PF11149_consen 7 ALPDLPMPELRARWRRLFGSPPPHHNRDFLERRLAYRIQ 45 (136)
T ss_pred hcccCCHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999988765
No 33
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=68.59 E-value=4 Score=45.37 Aligned_cols=53 Identities=30% Similarity=0.443 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchhhhhhhhc-ccCC-CCChhhHHHHH----HHhhcccc
Q 006474 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAF-ASYS-YRTSVDLKDKW----RNLLKASL 580 (643)
Q Consensus 527 r~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f-~~f~-~RT~VDLKDKW----RNLlK~s~ 580 (643)
..||.+|.+.|.+-.++|-. +|--|.+.+. ..|. .||--|||||| |+|+++.-
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~ 189 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARA 189 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccC
Confidence 67999999999999999999 9999986542 2454 59999999999 55555543
No 34
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=68.30 E-value=9.8 Score=34.34 Aligned_cols=55 Identities=20% Similarity=0.344 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHHhh----CCCchhhhhh---hhcccC-CCCChhhHHHHHHHhhccc
Q 006474 525 HHRAWTLSEVMKLVEGVSKY----GAGRWSEIKR---LAFASY-SYRTSVDLKDKWRNLLKAS 579 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKy----G~G~Wk~Il~---~~f~~f-~~RT~VDLKDKWRNLlK~s 579 (643)
-.|-||+++|-.|++|+-.| |.....++-. .-...+ ..=|..||.||-|.|.+.-
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky 65 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKY 65 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 45779999999999999888 7654444332 111122 2347789999999998753
No 35
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=66.55 E-value=4.3 Score=50.46 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCC--------CCChhhHHHHHHHhhc
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYS--------YRTSVDLKDKWRNLLK 577 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~--------~RT~VDLKDKWRNLlK 577 (643)
.---|..+++..|+-||-+||.|+|..|+.+..--|. .=+++.|.-|-.-|++
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~~~e~~P~a~~L~~R~~yLls 1192 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIFLVETVPQAKHLQRRADYLLS 1192 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhcccccCCchHHHHHHHHHHHH
Confidence 4557999999999999999999999999976542232 3346777766665554
No 36
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=65.74 E-value=8.5 Score=42.92 Aligned_cols=51 Identities=24% Similarity=0.388 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006474 523 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 523 RKkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 578 (643)
++..-+||.+|.+.+.+++..+|. .+..|.. .|++|...++|-||.+--|.
T Consensus 362 ~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~----lfP~R~RkqIKaKfi~Eek~ 412 (507)
T COG5118 362 KKGALRWSKKEIEKFYKALSIWGT-DFSLISS----LFPNRERKQIKAKFIKEEKV 412 (507)
T ss_pred CCCCCcccHHHHHHHHHHHHHhcc-hHHHHHH----hcCchhHHHHHHHHHHHhhh
Confidence 456789999999999999999999 8999984 46899999999999876653
No 37
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=40.34 E-value=22 Score=41.07 Aligned_cols=47 Identities=23% Similarity=0.372 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 577 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK 577 (643)
++--|+.||++.|+....-+-. .|..|+. +-+||+-+|-.||-||+-
T Consensus 58 ~~tews~eederlLhlakl~p~-qwrtIa~-----i~gr~~~qc~eRy~~ll~ 104 (617)
T KOG0050|consen 58 KKTEWSREEDERLLHLAKLEPT-QWRTIAD-----IMGRTSQQCLERYNNLLD 104 (617)
T ss_pred hhhhhhhhHHHHHHHHHHhcCC-ccchHHH-----HhhhhHHHHHHHHHHHHH
Confidence 3457999999999999888877 9999984 358999999999999985
No 38
>TIGR01624 LRP1_Cterm LRP1 C-terminal domain. This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.
Probab=37.74 E-value=27 Score=28.92 Aligned_cols=17 Identities=41% Similarity=0.640 Sum_probs=14.6
Q ss_pred CCCCCCceEEEEEEEcC
Q 006474 30 PNLGADPVVYKLVRVDG 46 (643)
Q Consensus 30 ~~~i~~pvvyklvRV~g 46 (643)
|-+++-|.|++||||.+
T Consensus 3 P~ev~s~AvFrcvRvs~ 19 (50)
T TIGR01624 3 PGEVSAPAVFKCVRVTA 19 (50)
T ss_pred ccccccceEEEEEEEec
Confidence 56889999999999953
No 39
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=29.22 E-value=1.1e+02 Score=29.67 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=41.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhh
Q 006474 524 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 576 (643)
Q Consensus 524 Kkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLl 576 (643)
++.++=|..|.+.+..-|++||. .+.....+---..--.|.-||+.+.+.+.
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 56788999999999999999996 78777754332334689999999887754
No 40
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=27.80 E-value=34 Score=34.32 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhh-hhcccCCCCChhhHHHHHHHhhcc
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKR-LAFASYSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~-~~f~~f~~RT~VDLKDKWRNLlK~ 578 (643)
+...||.||+..|-+-|-+|+.--=+.+.. ......-.||+..|.+||-..++.
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~vrk 58 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSVVRK 58 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHHHHH
Confidence 356899999999999999887522233331 111123589999999999666553
No 41
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=26.18 E-value=1.4e+02 Score=35.71 Aligned_cols=27 Identities=19% Similarity=0.471 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhh
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEI 552 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~I 552 (643)
.++.||-.|++++.+|++.||. .+..|
T Consensus 87 ~ktaWt~~E~~~Ffdal~~~GK-dFe~V 113 (782)
T KOG4468|consen 87 AKTAWTHQEEESFFDALRQVGK-DFEKV 113 (782)
T ss_pred cccccchhhHHHHHHHHHHhcc-cHHHH
Confidence 3779999999999999999998 77776
No 42
>cd01187 INT_SG4 INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases for which not much biochemical characterization is available.
Probab=20.17 E-value=1.8e+02 Score=29.02 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=48.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCC------chhhhhhhhcccCCCCChhhHHHHHHHhhcc-ccCCCCCCccccccccCCC
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAG------RWSEIKRLAFASYSYRTSVDLKDKWRNLLKA-SLAQTPPDSRMGARKHASS 597 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G------~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~-s~~q~p~~~g~~~Rk~~~~ 597 (643)
..+.||.+|..+|++++..++.. .|..|....+ ...-|.+-=+.=+|..+-.. ....-+..++ ++. ..
T Consensus 98 ~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~~~~~i~ll~-~tGlR~~E~~~L~~~did~~~~~i~i~~~K~---~~~-r~ 172 (299)
T cd01187 98 TPYIYTDEEIQRLLAAALQLPPTSGLRPWTYRTLFGLLA-VTGLRLGEALRLRLSDVDLDSGILTVRDSKF---GKS-RL 172 (299)
T ss_pred CCccCCHHHHHHHHHHHHhCCCCCCchhhHHHHHHHHHH-HhCCcHHHHHhCcHHhcCCCCCeEEEEecCC---CCc-cE
Confidence 34579999999999999877643 2444543211 12557776666677665321 1111011111 222 57
Q ss_pred CCCChHHHHHHHHH
Q 006474 598 VPIPMPVLLRVREL 611 (643)
Q Consensus 598 ~piP~~lL~RVreL 611 (643)
+|||+++..-+++.
T Consensus 173 vpl~~~l~~~l~~~ 186 (299)
T cd01187 173 VPLHASTRAALRDY 186 (299)
T ss_pred EeCCHHHHHHHHHH
Confidence 89999987777664
Done!