Query 006474
Match_columns 643
No_of_seqs 158 out of 407
Neff 3.4
Searched_HMMs 29240
Date Tue Mar 26 02:02:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006474.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006474hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aje_A Telomere repeat-binding 99.9 3.3E-22 1.1E-26 177.6 9.5 86 521-615 8-93 (105)
2 2roh_A RTBP1, telomere binding 99.8 2.5E-21 8.5E-26 176.1 10.7 102 507-617 8-113 (122)
3 2ckx_A NGTRF1, telomere bindin 99.8 9.3E-21 3.2E-25 161.9 7.5 81 527-616 1-81 (83)
4 2juh_A Telomere binding protei 99.8 1.6E-19 5.5E-24 164.0 9.7 86 520-614 11-96 (121)
5 1x58_A Hypothetical protein 49 99.6 2.6E-16 8.9E-21 128.8 6.8 54 524-579 6-59 (62)
6 3sjm_A Telomeric repeat-bindin 99.6 1.9E-15 6.4E-20 123.0 6.3 55 524-580 9-63 (64)
7 1ity_A TRF1; helix-turn-helix, 99.5 4.6E-14 1.6E-18 115.0 7.3 62 521-584 5-66 (69)
8 1w0t_A Telomeric repeat bindin 99.4 1.3E-13 4.3E-18 107.2 5.5 52 525-578 1-52 (53)
9 1guu_A C-MYB, MYB proto-oncoge 99.2 9.5E-12 3.2E-16 95.8 5.9 50 525-578 2-51 (52)
10 2d9a_A B-MYB, MYB-related prot 99.2 1.1E-11 3.8E-16 98.1 6.4 54 523-580 5-58 (60)
11 2dim_A Cell division cycle 5-l 99.2 1.5E-11 5.3E-16 100.2 7.2 59 524-586 7-65 (70)
12 1gvd_A MYB proto-oncogene prot 99.2 2.7E-11 9.1E-16 93.5 6.2 50 525-578 2-51 (52)
13 1x41_A Transcriptional adaptor 99.1 1.1E-10 3.9E-15 92.9 5.5 52 524-579 6-57 (60)
14 2elk_A SPCC24B10.08C protein; 99.0 2.3E-10 7.9E-15 90.8 4.7 47 526-576 9-56 (58)
15 1gv2_A C-MYB, MYB proto-oncoge 99.0 5.5E-10 1.9E-14 96.4 7.0 58 525-586 3-60 (105)
16 3osg_A MYB21; transcription-DN 98.9 9.4E-10 3.2E-14 98.6 7.0 60 522-586 7-66 (126)
17 2k9n_A MYB24; R2R3 domain, DNA 98.9 9E-10 3.1E-14 96.0 6.1 57 526-586 1-57 (107)
18 3zqc_A MYB3; transcription-DNA 98.9 2.1E-09 7E-14 96.8 7.0 57 526-586 2-58 (131)
19 1h8a_C AMV V-MYB, MYB transfor 98.9 2E-09 6.8E-14 96.2 6.3 58 525-586 26-83 (128)
20 2yum_A ZZZ3 protein, zinc fing 98.9 2E-09 6.7E-14 88.6 5.0 54 523-580 5-63 (75)
21 2din_A Cell division cycle 5-l 98.8 1.8E-09 6.2E-14 87.0 4.2 54 524-583 7-60 (66)
22 2yus_A SWI/SNF-related matrix- 98.8 2.4E-09 8.1E-14 90.5 5.0 52 520-576 12-63 (79)
23 2cu7_A KIAA1915 protein; nucle 98.8 3.1E-09 1.1E-13 87.2 5.1 54 524-582 7-60 (72)
24 2llk_A Cyclin-D-binding MYB-li 98.7 9.9E-09 3.4E-13 86.0 4.6 50 523-578 20-69 (73)
25 3zqc_A MYB3; transcription-DNA 98.7 2.4E-08 8.1E-13 89.9 7.3 56 526-586 54-109 (131)
26 1h89_C C-MYB, MYB proto-oncoge 98.7 2.7E-08 9.3E-13 91.7 6.7 57 525-585 57-113 (159)
27 2cqr_A RSGI RUH-043, DNAJ homo 98.7 2.3E-08 7.9E-13 83.7 5.5 54 521-578 13-69 (73)
28 1h89_C C-MYB, MYB proto-oncoge 98.6 5.5E-09 1.9E-13 96.3 1.8 58 525-586 5-62 (159)
29 1gv2_A C-MYB, MYB proto-oncoge 98.6 3.6E-08 1.2E-12 85.1 6.1 49 525-578 55-103 (105)
30 3osg_A MYB21; transcription-DN 98.6 6.2E-08 2.1E-12 86.8 6.3 52 525-581 61-112 (126)
31 2k9n_A MYB24; R2R3 domain, DNA 98.5 6.4E-08 2.2E-12 84.4 4.5 50 525-579 52-101 (107)
32 1h8a_C AMV V-MYB, MYB transfor 98.5 1E-07 3.5E-12 85.1 5.8 49 525-578 78-126 (128)
33 2ltp_A Nuclear receptor corepr 97.8 2.7E-08 9.4E-13 85.2 0.0 50 525-579 15-64 (89)
34 2cjj_A Radialis; plant develop 98.2 8.7E-07 3E-11 77.3 4.7 49 526-578 8-59 (93)
35 1ign_A Protein (RAP1); RAP1,ye 98.0 3.7E-06 1.3E-10 84.4 5.5 53 525-581 7-64 (246)
36 2eqr_A N-COR1, N-COR, nuclear 97.9 1.4E-05 4.6E-10 64.1 6.3 52 521-577 7-58 (61)
37 2cqq_A RSGI RUH-037, DNAJ homo 97.8 3.1E-05 1.1E-09 64.6 6.1 49 525-578 7-58 (72)
38 3hm5_A DNA methyltransferase 1 97.4 0.00016 5.3E-09 63.5 5.2 53 527-580 31-84 (93)
39 1wgx_A KIAA1903 protein; MYB D 97.2 0.00046 1.6E-08 58.2 5.9 49 527-579 9-60 (73)
40 2ebi_A DNA binding protein GT- 97.2 0.00016 5.6E-09 60.7 2.7 54 524-578 2-65 (86)
41 2iw5_B Protein corest, REST co 97.1 0.00036 1.2E-08 69.8 5.0 50 523-577 130-179 (235)
42 4b4c_A Chromodomain-helicase-D 96.9 0.00079 2.7E-08 64.0 5.4 52 526-577 134-195 (211)
43 1fex_A TRF2-interacting telome 96.7 0.0017 5.8E-08 52.2 4.7 49 526-577 2-58 (59)
44 4iej_A DNA methyltransferase 1 96.1 0.0057 2E-07 53.8 5.2 50 528-578 32-82 (93)
45 2yqk_A Arginine-glutamic acid 96.1 0.013 4.4E-07 47.3 6.6 52 523-578 6-57 (63)
46 2xb0_X Chromo domain-containin 95.9 0.0035 1.2E-07 63.8 3.2 31 527-557 169-199 (270)
47 2crg_A Metastasis associated p 95.4 0.035 1.2E-06 45.7 6.8 53 523-579 5-57 (70)
48 1ofc_X ISWI protein; nuclear p 95.1 0.011 3.6E-07 61.3 3.5 54 525-578 211-275 (304)
49 2xag_B REST corepressor 1; ami 94.8 0.028 9.7E-07 61.3 5.7 49 524-577 378-426 (482)
50 4eef_G F-HB80.4, designed hema 94.6 0.011 3.9E-07 50.1 1.7 44 526-573 20-66 (74)
51 4b4c_A Chromodomain-helicase-D 94.2 0.045 1.5E-06 52.0 5.1 53 523-577 4-58 (211)
52 2y9y_A Imitation switch protei 93.8 0.038 1.3E-06 58.7 4.1 53 526-578 228-291 (374)
53 4a69_C Nuclear receptor corepr 92.8 0.062 2.1E-06 46.6 3.1 48 523-575 40-87 (94)
54 1irz_A ARR10-B; helix-turn-hel 92.4 0.27 9.3E-06 40.6 6.2 54 522-577 3-61 (64)
55 1ug2_A 2610100B20RIK gene prod 86.4 0.88 3E-05 40.3 5.1 52 523-578 30-83 (95)
56 2xb0_X Chromo domain-containin 83.9 1.5 5E-05 44.8 6.2 51 525-577 2-54 (270)
57 2lr8_A CAsp8-associated protei 83.3 0.25 8.6E-06 41.6 0.0 49 525-578 13-63 (70)
58 1ign_A Protein (RAP1); RAP1,ye 81.7 1.2 4.2E-05 45.0 4.5 29 547-579 172-200 (246)
59 2xag_B REST corepressor 1; ami 46.3 4.2 0.00014 44.6 0.0 46 527-577 190-235 (482)
60 1ofc_X ISWI protein; nuclear p 45.6 23 0.00077 36.8 5.3 48 526-577 110-157 (304)
No 1
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.86 E-value=3.3e-22 Score=177.63 Aligned_cols=86 Identities=37% Similarity=0.646 Sum_probs=75.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCccccccccCCCCCC
Q 006474 521 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPI 600 (643)
Q Consensus 521 krRKkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~~~pi 600 (643)
++|+++++||+||+++|++||++||.|+|+.|++.+|..|.+||++|||||||||++.+... |.. | ...||
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~-p~~-----~---rg~~~ 78 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKIS-PQQ-----R---RGEPV 78 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCC-TTT-----T---TCCSC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCC-ccc-----c---cCCCC
Confidence 56788999999999999999999999999999998777889999999999999999977652 332 1 36899
Q ss_pred ChHHHHHHHHHHhhc
Q 006474 601 PMPVLLRVRELAEMQ 615 (643)
Q Consensus 601 P~~lL~RVreLA~~~ 615 (643)
|+++|+||++|++..
T Consensus 79 P~~~l~rv~~~~~~~ 93 (105)
T 2aje_A 79 PQELLNRVLNAHGYW 93 (105)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998774
No 2
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.85 E-value=2.5e-21 Score=176.08 Aligned_cols=102 Identities=35% Similarity=0.533 Sum_probs=82.7
Q ss_pred CCCCCcccccCCCC----CCCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCC
Q 006474 507 PDDNPATVRAVKGG----VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQ 582 (643)
Q Consensus 507 s~d~~~t~p~~k~g----krRKkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q 582 (643)
+.+..+.+|.+|.+ .+||++++||.||+++|++||++||.|+|+.|++.+|..|.+||++|||||||||+|.....
T Consensus 8 ~~~~~~~~p~~k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~ 87 (122)
T 2roh_A 8 NSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIA 87 (122)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSC
T ss_pred CcccccccCcccCCCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCC
Confidence 34444555554433 56888999999999999999999999999999998887889999999999999999866552
Q ss_pred CCCCccccccccCCCCCCChHHHHHHHHHHhhcCC
Q 006474 583 TPPDSRMGARKHASSVPIPMPVLLRVRELAEMQSQ 617 (643)
Q Consensus 583 ~p~~~g~~~Rk~~~~~piP~~lL~RVreLA~~~~~ 617 (643)
|.. | ...++|+++++||+++...+.+
T Consensus 88 -p~~-----k---r~~~~p~e~~~~v~~~h~~~g~ 113 (122)
T 2roh_A 88 -PQQ-----R---RGAPVPQELLDRVLAAQAYWSV 113 (122)
T ss_dssp -TTT-----C---CCSSCCHHHHHHHHHHHHHHHS
T ss_pred -ccc-----c---CCCCCCHHHHHHHHHHHHHHhh
Confidence 332 1 3678999999999998877543
No 3
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.82 E-value=9.3e-21 Score=161.88 Aligned_cols=81 Identities=38% Similarity=0.654 Sum_probs=70.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCccccccccCCCCCCChHHHH
Q 006474 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPIPMPVLL 606 (643)
Q Consensus 527 r~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~~~piP~~lL~ 606 (643)
++||+||+++|++||++||.|+|+.|++.+|..|.+||++|||||||||++.+... |.. + ...|||+++|+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~-p~~------~--~~~~~p~~~~~ 71 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA-PQQ------R--RGEPVPQDLLD 71 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC-GGG------C--CSSCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCC-ccc------c--cCCCCCHHHHH
Confidence 68999999999999999999999999998877789999999999999999976552 321 1 46899999999
Q ss_pred HHHHHHhhcC
Q 006474 607 RVRELAEMQS 616 (643)
Q Consensus 607 RVreLA~~~~ 616 (643)
||++|.....
T Consensus 72 rv~~~~a~~~ 81 (83)
T 2ckx_A 72 RVLAAHAYWS 81 (83)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987643
No 4
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.79 E-value=1.6e-19 Score=164.00 Aligned_cols=86 Identities=36% Similarity=0.625 Sum_probs=74.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCccccccccCCCCC
Q 006474 520 GVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVP 599 (643)
Q Consensus 520 gkrRKkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~~~p 599 (643)
...|+++++||.||+++|++||++||.|+|+.|++.+++.|.+||++|||||||||++.+..+ |.. + ...+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~-p~~------k--rg~~ 81 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA-PQQ------R--RGEP 81 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTC-STT------C--CCSC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccC-Ccc------c--CCCC
Confidence 356888999999999999999999999999999998887889999999999999999865552 322 1 3569
Q ss_pred CChHHHHHHHHHHhh
Q 006474 600 IPMPVLLRVRELAEM 614 (643)
Q Consensus 600 iP~~lL~RVreLA~~ 614 (643)
+|++++++|+++...
T Consensus 82 ~p~e~~~rv~~~h~~ 96 (121)
T 2juh_A 82 VPQDLLDRVLAAHAY 96 (121)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998877
No 5
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=2.6e-16 Score=128.80 Aligned_cols=54 Identities=28% Similarity=0.414 Sum_probs=48.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 006474 524 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 579 (643)
Q Consensus 524 Kkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 579 (643)
+.+++||+||+++|++||++||. +|+.|+..+ ..|.+||+||||||||||.|..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y-~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSF-PFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHS-CCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhC-CCccCcccchHHHHHHHHHhcc
Confidence 47899999999999999999999 999999754 3479999999999999999864
No 6
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.57 E-value=1.9e-15 Score=122.99 Aligned_cols=55 Identities=33% Similarity=0.727 Sum_probs=48.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcccc
Q 006474 524 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 580 (643)
Q Consensus 524 Kkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~ 580 (643)
+++++||+||+++|+++|++||.|+|+.|++.. .|.+||++||+|||+||+|+++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~--~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNY--PFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS--CCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhc--CCCCCCHHHHHHHHHHHhccCC
Confidence 456789999999999999999999999999643 2679999999999999999875
No 7
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.48 E-value=4.6e-14 Score=114.95 Aligned_cols=62 Identities=40% Similarity=0.686 Sum_probs=53.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCC
Q 006474 521 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTP 584 (643)
Q Consensus 521 krRKkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p 584 (643)
+.++++.+||+||+++|+++|++||.++|+.|+... .|.+||++||++||+|++++.+.+..
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~--~~~~Rt~~qcr~Rw~~~l~p~i~k~~ 66 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY--KFNNRTSVMLKDRWRTMKKLKLISSD 66 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHS--CCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHc--CcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 456778999999999999999999999999999532 13499999999999999999987543
No 8
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.42 E-value=1.3e-13 Score=107.21 Aligned_cols=52 Identities=44% Similarity=0.760 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 578 (643)
++.+||+||++.|+++|++||.++|+.|.... .|.+||++||++||+|++|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~--~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY--KFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS--CCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc--CCCCCCHHHHHHHHHHHHcc
Confidence 46899999999999999999999999999532 13489999999999999975
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.23 E-value=9.5e-12 Score=95.81 Aligned_cols=50 Identities=28% Similarity=0.512 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 578 (643)
++.+||+||++.|+++|++||.++|+.|.. .|++||..+|++||.+++.+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIAN----YLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHH----TSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH----HcCCCCHHHHHHHHHHHcCc
Confidence 367999999999999999999999999984 36799999999999999876
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.23 E-value=1.1e-11 Score=98.15 Aligned_cols=54 Identities=20% Similarity=0.402 Sum_probs=48.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcccc
Q 006474 523 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 580 (643)
Q Consensus 523 RKkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~ 580 (643)
..++.+||+||++.|+++|++||.++|+.|.. .|.+||..||++||.+++++.+
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLAS----HFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHH----HCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH----HccCCCHHHHHHHHHHHcCCcc
Confidence 45678999999999999999999999999994 3679999999999999998764
No 11
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.5e-11 Score=100.15 Aligned_cols=59 Identities=25% Similarity=0.430 Sum_probs=53.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006474 524 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 586 (643)
Q Consensus 524 Kkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 586 (643)
.++.+||+||++.|+++|++||.++|+.|.. .+.+||..||++||.|++++.+..+||.
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt 65 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIAS----LLHRKSAKQCKARWYEWLDPSIKKTEWS 65 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHH----HSTTCCHHHHHHHHHHTSCSSSCCCCSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHH----HhcCCCHHHHHHHHHHHcCCcccCCCCC
Confidence 4578999999999999999999999999984 3579999999999999999999888874
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.18 E-value=2.7e-11 Score=93.45 Aligned_cols=50 Identities=32% Similarity=0.619 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 578 (643)
++.+||+||++.|+++|++||.++|..|.. .|.+||..+|++||.|++++
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAK----HLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHT----TSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHH----HcCCCCHHHHHHHHHHHcCc
Confidence 367999999999999999999999999984 36899999999999999875
No 13
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.07 E-value=1.1e-10 Score=92.90 Aligned_cols=52 Identities=21% Similarity=0.482 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 006474 524 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 579 (643)
Q Consensus 524 Kkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 579 (643)
..+.+||+||++.|+++|++||.++|..|.. .+.+||..||++||.+++...
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVAN----QMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHH----HHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHH----HhCCCCHHHHHHHHHHHccCC
Confidence 4567899999999999999999999999985 347899999999999988754
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.00 E-value=2.3e-10 Score=90.84 Aligned_cols=47 Identities=21% Similarity=0.502 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCC-CCChhhHHHHHHHhh
Q 006474 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYS-YRTSVDLKDKWRNLL 576 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~-~RT~VDLKDKWRNLl 576 (643)
+.+||+||++.|+++|++||.++|+.|.. .+. +||..||++||.|+.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~----~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIAD----YVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHH----HHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHH----HHCCCCCHHHHHHHHHHHc
Confidence 56799999999999999999999999984 256 899999999999864
No 15
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.99 E-value=5.5e-10 Score=96.41 Aligned_cols=58 Identities=28% Similarity=0.527 Sum_probs=50.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 586 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 586 (643)
++.+||+||++.|+++|++||.++|..|.. .+++||+.+|++||+|++.+.+..+||.
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt 60 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAK----HLKGRIGKQCRERWHNHLNPEVKKTSWT 60 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHT----TSTTCCHHHHHHHHHHTTCCCCCCCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhh----hhcCCCHHHHHHHHHhccCCcccccCCC
Confidence 357899999999999999999999999983 4689999999999999998877666653
No 16
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.95 E-value=9.4e-10 Score=98.56 Aligned_cols=60 Identities=25% Similarity=0.509 Sum_probs=52.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006474 522 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 586 (643)
Q Consensus 522 rRKkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 586 (643)
+..++.+||+||++.|+++|++||. +|..|.. .+++||+.+|++||+|.+.+.+..+||.
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~----~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT 66 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAA----TFPNRNARQCRDRWKNYLAPSISHTPWT 66 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHH----TCTTCCHHHHHHHHHHHTSTTSCCSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHH----HcCCCCHHHHHHHHhhhcccccccccCC
Confidence 3456789999999999999999999 9999984 4679999999999999999888777774
No 17
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.93 E-value=9e-10 Score=96.01 Aligned_cols=57 Identities=26% Similarity=0.478 Sum_probs=50.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006474 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 586 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 586 (643)
+.+||+||++.|+++|++||.++|..|.. .+++||+.||++||.|.+.+.+..+||.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT 57 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQ----LMITRNPRQCRERWNNYINPALRTDPWS 57 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHH----HTTTSCHHHHHHHHHHHSSSCCTTCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhh----hcCCCCHHHHHHHHHHHHcccccccccC
Confidence 36899999999999999999999999984 3679999999999999999887766663
No 18
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.89 E-value=2.1e-09 Score=96.78 Aligned_cols=57 Identities=19% Similarity=0.320 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006474 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 586 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 586 (643)
+.+||+||++.|+++|++||.++|..|.. .+++||+.||++||+|.+.+.+..+||.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt 58 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITS----FLPNRSPKQCRERWFNHLDPAVVKHAWT 58 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTT----SCTTSCHHHHHHHHHHHTSTTCCCSCCC
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHH----HHCCCCHHHHHHHHhhccCccccCCCCC
Confidence 46899999999999999999999999983 4689999999999999999888777764
No 19
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.88 E-value=2e-09 Score=96.23 Aligned_cols=58 Identities=29% Similarity=0.603 Sum_probs=51.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 586 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 586 (643)
++.+||+||++.|+++|++||.++|..|.. .|++||..+|++||.|++.+.+..+||.
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT 83 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAK----HLKGRIGKQCRERWHNHLNPEVKKTSWT 83 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHH----HSSSCCHHHHHHHHHHTTCSSSCCSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHH----HhcCCcHHHHHHHHHHhcccccccccCC
Confidence 467899999999999999999999999984 3689999999999999998877666663
No 20
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=2e-09 Score=88.64 Aligned_cols=54 Identities=22% Similarity=0.373 Sum_probs=46.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCC-----CchhhhhhhhcccCCCCChhhHHHHHHHhhcccc
Q 006474 523 RKHHRAWTLSEVMKLVEGVSKYGA-----GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 580 (643)
Q Consensus 523 RKkrr~WT~EEveaLv~GVeKyG~-----G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~ 580 (643)
...+.+||.||++.|+++|++||. ++|..|.. .|.+||..||+++|.++++...
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~----~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD----ELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH----HHSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH----HhCCCCHHHHHHHHHHHHHHHH
Confidence 345679999999999999999996 79999984 3578999999999999887654
No 21
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.8e-09 Score=87.04 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=47.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCC
Q 006474 524 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQT 583 (643)
Q Consensus 524 Kkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~ 583 (643)
.++.+||.||++.|+++|++||. +|..|.. |.+||..+|++||.+++++.+...
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-----~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-----IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-----HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-----ccCcCHHHHHHHHHHHhChHhcCC
Confidence 34678999999999999999999 9999995 347999999999999999877643
No 22
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.83 E-value=2.4e-09 Score=90.51 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhh
Q 006474 520 GVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 576 (643)
Q Consensus 520 gkrRKkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLl 576 (643)
++.+..+.+||.||++.|+++|++|| ++|..|.+. +.+||..||+.+|.++.
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~----v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEH----VGSRTQDECILHFLRLP 63 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHH----HSSCCHHHHHHHHTTSC
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHH----cCCCCHHHHHHHHHHhc
Confidence 34455678999999999999999999 899999952 46899999999999983
No 23
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.82 E-value=3.1e-09 Score=87.23 Aligned_cols=54 Identities=26% Similarity=0.491 Sum_probs=47.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCC
Q 006474 524 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQ 582 (643)
Q Consensus 524 Kkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q 582 (643)
.++.+||.||++.|+++|++||. +|+.|.. .|++||..+||.+|.++++.....
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~----~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR-RWTKISK----LIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS-CHHHHHH----HHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-CHHHHHH----HcCCCCHHHHHHHHHHHHHHHHhc
Confidence 45779999999999999999999 9999985 357999999999999999876553
No 24
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.70 E-value=9.9e-09 Score=85.99 Aligned_cols=50 Identities=30% Similarity=0.411 Sum_probs=43.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006474 523 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 523 RKkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 578 (643)
.-++.+||+||++.|++.|++||. +|+.|.+ .| +||..+||++|+.|.+.
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~----~l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHGN-DWATIGA----AL-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHH----HH-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHH----Hh-CCCHHHHHHHHHHHHHH
Confidence 345679999999999999999998 6999984 35 99999999999987654
No 25
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.70 E-value=2.4e-08 Score=89.89 Aligned_cols=56 Identities=23% Similarity=0.486 Sum_probs=49.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006474 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 586 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 586 (643)
+.+||+||++.|+++|.+||. +|+.|.. .|++||..+||+||.++++..+...++.
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~----~l~gRt~~~~k~rw~~~l~~~~~~~~~~ 109 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS-KWSVIAK----LIPGRTDNAIKNRWNSSISKRISTNSNH 109 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS-CHHHHTT----TSTTCCHHHHHHHHHHTTGGGCCCCTTS
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHH----HcCCCCHHHHHHHHHHHHHHHhhcCCCc
Confidence 468999999999999999996 9999984 4689999999999999999888776554
No 26
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.66 E-value=2.7e-08 Score=91.69 Aligned_cols=57 Identities=28% Similarity=0.536 Sum_probs=49.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCC
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPP 585 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~ 585 (643)
.+.+||+||++.|+++|++||.++|+.|.. .|++||..+|++||.|++.+.+..+||
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~l~p~~~~~~W 113 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAK----HLKGRIGKQCRERWHNHLNPEVKKTSW 113 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHH----TSTTCCHHHHHHHHHHTTCTTSCCSCC
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHH----HcCCCCHHHHHHHHHHHhCccccccCC
Confidence 467999999999999999999999999984 468999999999999998876655554
No 27
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.65 E-value=2.3e-08 Score=83.71 Aligned_cols=54 Identities=19% Similarity=0.370 Sum_probs=46.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCC---CchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006474 521 VRRKHHRAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 521 krRKkrr~WT~EEveaLv~GVeKyG~---G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 578 (643)
+.+..+.+||.+|+..|+.+|++||. .+|..|+. .+++||..+|+.+|.+|++.
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~----~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR----CVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG----GCSSSCHHHHHHHHHHHHSS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH----HcCCCCHHHHHHHHHHHHHc
Confidence 34456788999999999999999993 59999984 46899999999999999864
No 28
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.65 E-value=5.5e-09 Score=96.31 Aligned_cols=58 Identities=28% Similarity=0.479 Sum_probs=16.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 586 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 586 (643)
.+.+||+||++.|+++|++||.++|..|.. .+++||+.||++||+|++.+.+..+||.
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt 62 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGTDDWKVIAN----YLPNRTDVQCQHRWQKVLNPELIKGPWT 62 (159)
T ss_dssp ------------------------------------------CHHHHHHTTTCTTCCCSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH----HcCCCCHHHHHHHHHHccCCCcCCCCCC
Confidence 467899999999999999999999999984 4679999999999999999887766663
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.62 E-value=3.6e-08 Score=85.08 Aligned_cols=49 Identities=24% Similarity=0.554 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 578 (643)
++.+||+||++.|+++|++||. +|+.|.. .|++||..+||+||+++++.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~----~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAK----LLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHHT----TCTTCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHHH----HcCCCCHHHHHHHHHHHHhc
Confidence 3579999999999999999997 9999984 47899999999999999875
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.57 E-value=6.2e-08 Score=86.78 Aligned_cols=52 Identities=27% Similarity=0.600 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccC
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 581 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~ 581 (643)
.+.+||.||++.|+++|++||. +|+.|.. .|++||..+||+||++|++.--.
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~----~l~gRt~~~~k~rw~~l~~k~~~ 112 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR-QWAIIAK----FFPGRTDIHIKNRWVTISNKLGI 112 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHT----TSTTCCHHHHHHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHH----HcCCCCHHHHHHHHHHHHHhcCC
Confidence 3468999999999999999996 9999984 47899999999999999976444
No 31
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.51 E-value=6.4e-08 Score=84.36 Aligned_cols=50 Identities=20% Similarity=0.579 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 579 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 579 (643)
.+.+||+||++.|+++|.+||. +|+.|.+ .|++||..+||+||++|++..
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~----~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKISK----FLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHHH----HHSSSCHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHHH----HCCCCCHHHHHHHHHHHHhhH
Confidence 3579999999999999999998 9999985 357999999999999999863
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.50 E-value=1e-07 Score=85.14 Aligned_cols=49 Identities=24% Similarity=0.547 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 578 (643)
++.+||+||++.|+++|++||. +|+.|.. .|++||..+||++|+++++.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~----~l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAK----LLPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHGG----GSTTCCHHHHHHHHHTTTTC
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHH----HCCCCCHHHHHHHHHHHHhc
Confidence 3578999999999999999997 9999984 46899999999999999875
No 33
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.80 E-value=2.7e-08 Score=85.23 Aligned_cols=50 Identities=26% Similarity=0.377 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 579 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 579 (643)
.+.+||.||++.|+++|++||. +|..|.. .|.+||..+||.+|.++++..
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~----~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIAR----MVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 4668999999999999999999 8999984 468999999999999998753
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.22 E-value=8.7e-07 Score=77.30 Aligned_cols=49 Identities=22% Similarity=0.516 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHhhC---CCchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006474 526 HRAWTLSEVMKLVEGVSKYG---AGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeKyG---~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 578 (643)
..+||.||+..|++++.+|| ..+|..|+. .+++||..+|+.+|.+|+..
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~----~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVAR----AVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH----HSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH----HcCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999998 457999994 46899999999999999753
No 35
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.03 E-value=3.7e-06 Score=84.44 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCc-----hhhhhhhhcccCCCCChhhHHHHHHHhhccccC
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGAGR-----WSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 581 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~G~-----Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~ 581 (643)
.+.+||+||++.|++.|++||..+ |+.|+. .+++||.-+||+||+++++..+.
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk----~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH----YVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT----TSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHH----HcCCCCHHHHHHHHHHHHhhhcc
Confidence 456999999999999999998853 999984 47899999999999999998764
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=1.4e-05 Score=64.10 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=45.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006474 521 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 577 (643)
Q Consensus 521 krRKkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK 577 (643)
+.|+...+||++|.+.+++|+.+||. +|..|.. .+++||..||...|....|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~----~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS----YLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHH----HCTTSCHHHHHHHHHHHTC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHH----HcCCCCHHHHHHHHHHhcC
Confidence 45678899999999999999999996 9999983 3689999999999977655
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.79 E-value=3.1e-05 Score=64.63 Aligned_cols=49 Identities=24% Similarity=0.483 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC---CchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~---G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 578 (643)
....||.||+..|.+++.+|+. .+|..|... + +||..|++.+|..|...
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~----l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE----L-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH----H-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH----h-CCCHHHHHHHHHHHHHh
Confidence 4568999999999999999994 579999953 2 79999999999999876
No 38
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.40 E-value=0.00016 Score=63.52 Aligned_cols=53 Identities=21% Similarity=0.329 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchhhhhhhhc-ccCCCCChhhHHHHHHHhhcccc
Q 006474 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAF-ASYSYRTSVDLKDKWRNLLKASL 580 (643)
Q Consensus 527 r~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f-~~f~~RT~VDLKDKWRNLlK~s~ 580 (643)
.+||.||++.|.+-+++||. +|..|.+.+- ..+..||-.|||+||-.+++.-.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~ 84 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999 9999996432 23468999999999998887543
No 39
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.22 E-value=0.00046 Score=58.17 Aligned_cols=49 Identities=20% Similarity=0.387 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHhhCC---CchhhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 006474 527 RAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 579 (643)
Q Consensus 527 r~WT~EEveaLv~GVeKyG~---G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 579 (643)
..||.+|+.+|.+++..|+. ++|..|.. .+.+||..+|+.+|.-|.+..
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~----~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAA----AVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH----HTTTSCHHHHHHHHHHSSSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHH----HcCCCCHHHHHHHHHHHHhcc
Confidence 57999999999999999986 79999994 467899999999999996643
No 40
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.17 E-value=0.00016 Score=60.69 Aligned_cols=54 Identities=28% Similarity=0.429 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC---------Cchhhhhhh-hcccCCCCChhhHHHHHHHhhcc
Q 006474 524 KHHRAWTLSEVMKLVEGVSKYGA---------GRWSEIKRL-AFASYSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 524 Kkrr~WT~EEveaLv~GVeKyG~---------G~Wk~Il~~-~f~~f~~RT~VDLKDKWRNLlK~ 578 (643)
++...||.+|+.+|+.....+-. ..|..|... .-.-| .||+.+|++||.||.+.
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~-~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGF-DRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHH
Confidence 45678999999999999975322 279999852 11112 79999999999999985
No 41
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.12 E-value=0.00036 Score=69.78 Aligned_cols=50 Identities=24% Similarity=0.473 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006474 523 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 577 (643)
Q Consensus 523 RKkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK 577 (643)
.+...+||+||.+.+++|+.+||. +|..|.+. +.+||..+||..|.+..|
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~----VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDV----IGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHH----HSSCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHH
Confidence 466889999999999999999998 89999853 579999999999988665
No 42
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.94 E-value=0.00079 Score=64.02 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccC----------CCCChhhHHHHHHHhhc
Q 006474 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASY----------SYRTSVDLKDKWRNLLK 577 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f----------~~RT~VDLKDKWRNLlK 577 (643)
...||.+|+..|+.||.+||.|+|..|+.+..-.| ..++++.|..|--.|++
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 45699999999999999999999999997543111 34566777777655554
No 43
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.69 E-value=0.0017 Score=52.22 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhh--------CCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006474 526 HRAWTLSEVMKLVEGVSKY--------GAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 577 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeKy--------G~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK 577 (643)
|.+||+||+.+|++-|.+| |.--|+.|.. ..++.+|-..++|||++-++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~---~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEK---SSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHH---SCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHH---hHCCCCCHHHHHHHHHHHcc
Confidence 6799999999999999999 6667998874 24689999999999998664
No 44
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.15 E-value=0.0057 Score=53.81 Aligned_cols=50 Identities=22% Similarity=0.373 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCchhhhhhhhc-ccCCCCChhhHHHHHHHhhcc
Q 006474 528 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAF-ASYSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 528 ~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f-~~f~~RT~VDLKDKWRNLlK~ 578 (643)
.||.||+..|.+-+++|+. +|--|.+.+. ..+..||--|||+||-.+++.
T Consensus 32 ~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~ 82 (93)
T 4iej_A 32 AWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHH
Confidence 6999999999999999999 9999997432 245689999999999777654
No 45
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.10 E-value=0.013 Score=47.33 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=43.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006474 523 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 523 RKkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 578 (643)
+.....||+||.....+|+.+||. +|..|.+. .+..||..||..-|-...|.
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~---~v~~Kt~~~~v~fYY~wKkt 57 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKE---LLPNKETGELITFYYYWKKT 57 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHH---SCTTSCHHHHHHHHHHHHCS
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHH---HcCCCcHHHHHHHHhcccCC
Confidence 345679999999999999999999 89999842 26899999999887665543
No 46
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.92 E-value=0.0035 Score=63.76 Aligned_cols=31 Identities=45% Similarity=0.811 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchhhhhhhhc
Q 006474 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAF 557 (643)
Q Consensus 527 r~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f 557 (643)
-.|+.+|+..|+.||.+||.|+|..|+.+..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp~ 199 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDDPF 199 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCTT
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcCcc
Confidence 4699999999999999999999999997654
No 47
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.42 E-value=0.035 Score=45.73 Aligned_cols=53 Identities=15% Similarity=0.338 Sum_probs=45.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 006474 523 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 579 (643)
Q Consensus 523 RKkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 579 (643)
|+....||++|...+.+|+.+||. +|..|... .++.||..||..-|-...|..
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~---~v~~Kt~~~~v~fYY~wKkt~ 57 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQD---FLPWKSLTSIIEYYYMWKTTD 57 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHT---TCSSSCHHHHHHHHHHHHTCC
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHH---HcCCCCHHHHHHHHHhhcCCc
Confidence 567889999999999999999999 89999841 368999999999888655543
No 48
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.13 E-value=0.011 Score=61.25 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC---Cchhhhhhh-------hccc-CCCCChhhHHHHHHHhhcc
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGA---GRWSEIKRL-------AFAS-YSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~---G~Wk~Il~~-------~f~~-f~~RT~VDLKDKWRNLlK~ 578 (643)
+.+.||.+|+..|+-++.+||. |+|..|+.. .|+- |..||+++|..|-..|++.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ 275 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL 275 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 3458999999999999999999 999999742 1222 3789999999999999875
No 49
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=94.76 E-value=0.028 Score=61.28 Aligned_cols=49 Identities=24% Similarity=0.453 Sum_probs=42.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006474 524 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 577 (643)
Q Consensus 524 Kkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK 577 (643)
+..-+||.+|.+.+++|+.+||. +|..|.. .+..||..|||.-|.+..+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~----~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISD----VIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHH----HHSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH----HhCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999 9999994 3578999999998876444
No 50
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=94.59 E-value=0.011 Score=50.10 Aligned_cols=44 Identities=23% Similarity=0.447 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHHhhCCC---chhhhhhhhcccCCCCChhhHHHHHH
Q 006474 526 HRAWTLSEVMKLVEGVSKYGAG---RWSEIKRLAFASYSYRTSVDLKDKWR 573 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeKyG~G---~Wk~Il~~~f~~f~~RT~VDLKDKWR 573 (643)
-..||.+|..+|..++.+|..+ +|..|.. .+++||..+++..+.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~----~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQ----YVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG----GSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH----HcCCCCHHHHHHHHH
Confidence 4579999999999999999976 9999983 467999999987664
No 51
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.22 E-value=0.045 Score=51.98 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=42.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhC--CCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006474 523 RKHHRAWTLSEVMKLVEGVSKYG--AGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 577 (643)
Q Consensus 523 RKkrr~WT~EEveaLv~GVeKyG--~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK 577 (643)
|...+.||..|...|++++.+|| .++|..|..++ .|.++|..++++=++.++.
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da--~L~~Ks~~~v~~y~~~f~~ 58 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDA--ELVDKSETDLRRLGELVHN 58 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHT--TCTTSCHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHh--ccCCCCHHHHHHHHHHHHH
Confidence 56678999999999999999999 68999999753 4789999999986655543
No 52
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=93.84 E-value=0.038 Score=58.70 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCC---Cchhhhhhh-----h--ccc-CCCCChhhHHHHHHHhhcc
Q 006474 526 HRAWTLSEVMKLVEGVSKYGA---GRWSEIKRL-----A--FAS-YSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeKyG~---G~Wk~Il~~-----~--f~~-f~~RT~VDLKDKWRNLlK~ 578 (643)
.+.||.+|+..|+-++.+||. |+|..|+.. . |+- |..||+..|..|-..|++.
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~ 291 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQC 291 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 458999999999999999999 999999753 1 222 3789999999999999975
No 53
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=92.79 E-value=0.062 Score=46.64 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=40.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHh
Q 006474 523 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNL 575 (643)
Q Consensus 523 RKkrr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNL 575 (643)
|+....||++|.+.+.+|+..||. +|..|. ..++.||..+|-.=+-..
T Consensus 40 r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia----~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 40 RQVMNMWSEQEKETFREKFMQHPK-NFGLIA----SFLERKTVAECVLYYYLT 87 (94)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHSTT-CHHHHH----HTCTTCCHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCC-CHHHHH----HHcCCCCHHHHHHHHhcc
Confidence 466789999999999999999998 999996 347899999998665443
No 54
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.39 E-value=0.27 Score=40.57 Aligned_cols=54 Identities=26% Similarity=0.296 Sum_probs=41.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCc--hhhhhhhhcccCCCCChhhHH---HHHHHhhc
Q 006474 522 RRKHHRAWTLSEVMKLVEGVSKYGAGR--WSEIKRLAFASYSYRTSVDLK---DKWRNLLK 577 (643)
Q Consensus 522 rRKkrr~WT~EEveaLv~GVeKyG~G~--Wk~Il~~~f~~f~~RT~VDLK---DKWRNLlK 577 (643)
.+|+|-.||+|.-+.++++|+++|..+ |+.|++.-. ..+.|..++| .|||..++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~--v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMN--VDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999532 789986321 3678988888 56666544
No 55
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=86.35 E-value=0.88 Score=40.25 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=44.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCC--CchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006474 523 RKHHRAWTLSEVMKLVEGVSKYGA--GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 523 RKkrr~WT~EEveaLv~GVeKyG~--G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 578 (643)
-.+--.||.||+..++...++-|. -.|+.|.. .|.+|+.-++++|++.|++-
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~----~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQ----QLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHH----HHSSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHH----HHccCCHHHHHHHHHHHHHH
Confidence 356778999999999999999986 57888873 46789999999999999873
No 56
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=83.95 E-value=1.5 Score=44.75 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhC--CCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006474 525 HHRAWTLSEVMKLVEGVSKYG--AGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 577 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG--~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK 577 (643)
+++.||..|...|++++.+|| .++|..|..+ ..|..+....++.=+..|+.
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~d--A~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIAD--GTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHT--TSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh--cccccCCHHHHHHHHHHHHH
Confidence 467899999999999999999 4899999865 35788998888876665543
No 57
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=83.27 E-value=0.25 Score=41.59 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC--CchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006474 525 HHRAWTLSEVMKLVEGVSKYGA--GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 578 (643)
Q Consensus 525 krr~WT~EEveaLv~GVeKyG~--G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 578 (643)
.--.||.||+..++...++-|. -.|+.|. ..+ +|+.-++++|++.|++-
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA----~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLA----AKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 4568999999999999999996 5688887 345 89999999999999874
No 58
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=81.68 E-value=1.2 Score=45.01 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=23.9
Q ss_pred CchhhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 006474 547 GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 579 (643)
Q Consensus 547 G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 579 (643)
+.|+.|.+ .|++||....|||||.+++..
T Consensus 172 ~~fk~ia~----~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 172 EFFKHFAE----EHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp THHHHHHH----HTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHH----HCCCCChhhHHHHHHHHHhhc
Confidence 37988884 368999999999999988743
No 59
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=46.29 E-value=4.2 Score=44.58 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006474 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 577 (643)
Q Consensus 527 r~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK 577 (643)
..||.+|...+.+|+.+||. +|..|.+ .+++||.-+|-.-|-...|
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~~----~lp~Ksv~e~V~yYY~WKK 235 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQQ----MLPDKSIASLVKFYYSWKK 235 (482)
T ss_dssp ---------------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHHH----HcCCCCHHHHHHHhccccc
Confidence 47999999999999999999 8999983 3678888888765444333
No 60
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=45.62 E-value=23 Score=36.77 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006474 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 577 (643)
Q Consensus 526 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK 577 (643)
-..||..+-.+++.|+.+||..+|..|.. .+.+.|..+.+.=...+..
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~----ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAK----DVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTT----SSTTCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHH----HhcCCCHHHHHHHHHHHHH
Confidence 45699999999999999999999999984 3468999999877666665
Done!