Query 006475
Match_columns 643
No_of_seqs 158 out of 951
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 23:48:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00029 hypothetical protein; 100.0 3E-176 6E-181 1428.5 46.8 479 103-643 6-487 (487)
2 COG0397 Uncharacterized conser 100.0 5E-172 1E-176 1364.0 42.7 480 102-643 5-488 (488)
3 PF02696 UPF0061: Uncharacteri 100.0 9E-166 2E-170 1349.0 42.3 454 125-614 9-487 (487)
4 KOG2542 Uncharacterized conser 100.0 2E-119 5E-124 939.7 23.7 418 209-643 2-500 (500)
5 KOG2542 Uncharacterized conser 99.5 5.5E-14 1.2E-18 149.4 12.1 259 224-520 1-302 (500)
6 PF06293 Kdo: Lipopolysacchari 95.6 0.06 1.3E-06 53.4 9.1 150 245-469 57-206 (206)
7 PRK15123 lipopolysaccharide co 94.2 1.2 2.6E-05 46.7 14.5 157 246-469 75-231 (268)
8 TIGR02172 Fb_sc_TIGR02172 Fibr 75.0 16 0.00035 37.1 8.8 30 245-274 38-67 (226)
9 PRK14879 serine/threonine prot 70.5 25 0.00055 33.8 8.7 43 369-411 98-143 (211)
10 KOG3087 Serine/threonine prote 65.5 30 0.00065 35.9 8.2 136 238-452 49-184 (229)
11 PRK09902 hypothetical protein; 59.6 18 0.0004 37.3 5.6 115 220-400 48-162 (216)
12 COG3642 Mn2+-dependent serine/ 59.3 9.4 0.0002 39.2 3.4 38 371-408 97-137 (204)
13 cd00180 PKc Catalytic domain o 58.2 14 0.00031 33.5 4.2 46 367-412 93-143 (215)
14 PRK05231 homoserine kinase; Pr 55.9 53 0.0011 34.2 8.5 28 383-414 185-212 (319)
15 PRK11768 serine/threonine prot 52.1 1.1E+02 0.0024 32.7 10.2 47 364-416 174-221 (325)
16 cd05151 ChoK Choline Kinase (C 51.7 48 0.001 30.5 6.6 75 372-473 89-168 (170)
17 cd06621 PKc_MAPKK_Pek1_like Ca 46.0 31 0.00067 34.8 4.7 47 367-413 106-156 (287)
18 cd08530 STKc_CNK2-like Catalyt 43.3 31 0.00068 33.4 4.1 45 368-412 105-153 (256)
19 TIGR03724 arch_bud32 Kae1-asso 41.1 36 0.00077 32.6 4.1 31 370-400 94-124 (199)
20 cd07829 STKc_CDK_like Catalyti 39.4 58 0.0013 32.1 5.4 48 368-415 100-151 (282)
21 cd08215 STKc_Nek Catalytic dom 38.0 38 0.00083 32.6 3.8 46 367-412 104-153 (258)
22 PF01163 RIO1: RIO1 family; I 37.8 34 0.00075 34.2 3.5 34 365-401 109-142 (188)
23 PF08757 CotH: CotH protein; 36.3 5E+02 0.011 26.8 18.6 38 222-271 36-73 (323)
24 cd05041 PTKc_Fes_like Catalyti 35.4 2.4E+02 0.0052 27.4 9.0 44 369-412 96-143 (251)
25 cd08223 STKc_Nek4 Catalytic do 35.3 47 0.001 32.3 4.0 44 369-412 105-152 (257)
26 cd06632 STKc_MEKK1_plant Catal 35.1 43 0.00094 32.5 3.7 47 370-416 106-156 (258)
27 PRK02561 psbF cytochrome b559 33.9 17 0.00037 28.7 0.5 13 255-267 21-33 (44)
28 COG4453 Uncharacterized protei 32.0 54 0.0012 30.1 3.4 34 598-631 60-93 (95)
29 cd05146 RIO3_euk RIO kinase fa 31.6 1.3E+02 0.0027 30.6 6.4 33 365-400 127-159 (197)
30 PRK09605 bifunctional UGMP fam 31.5 3E+02 0.0064 31.5 10.1 49 364-412 426-477 (535)
31 cd05120 APH_ChoK_like Aminogly 30.8 64 0.0014 27.9 3.7 32 370-401 90-124 (155)
32 PF08006 DUF1700: Protein of u 30.4 2.2E+02 0.0047 27.9 7.7 50 444-499 7-61 (181)
33 PRK12790 chemotactic signal-re 29.1 2.6E+02 0.0055 26.6 7.5 49 430-484 14-62 (115)
34 cd05118 STKc_CMGC Catalytic do 28.6 48 0.001 32.7 2.9 41 369-409 101-145 (283)
35 cd06612 STKc_MST1_2 Catalytic 28.1 73 0.0016 30.9 4.0 44 368-411 101-148 (256)
36 cd06608 STKc_myosinIII_like Ca 27.6 59 0.0013 31.8 3.3 45 368-412 115-163 (275)
37 TIGR02904 spore_ysxE spore coa 27.2 60 0.0013 34.1 3.4 66 384-471 195-260 (309)
38 TIGR01982 UbiB 2-polyprenylphe 26.8 5.8E+02 0.013 28.7 11.2 113 383-519 274-402 (437)
39 cd06605 PKc_MAPKK Catalytic do 26.7 44 0.00095 32.7 2.2 45 368-412 102-151 (265)
40 cd05583 STKc_MSK_N N-terminal 26.7 55 0.0012 32.8 3.0 38 370-407 109-150 (288)
41 PF12860 PAS_7: PAS fold 26.4 46 0.001 29.2 2.1 77 144-220 14-100 (115)
42 cd06626 STKc_MEKK4 Catalytic d 25.8 1.1E+02 0.0025 29.7 4.9 45 368-412 101-149 (264)
43 COG4136 ABC-type uncharacteriz 25.1 37 0.0008 34.3 1.3 28 232-263 161-188 (213)
44 KOG2444 WD40 repeat protein [G 24.3 61 0.0013 34.1 2.8 40 256-301 103-144 (238)
45 cd06614 STKc_PAK Catalytic dom 23.8 80 0.0017 31.6 3.5 41 369-409 119-163 (286)
46 cd08529 STKc_FA2-like Catalyti 23.8 1.1E+02 0.0024 29.7 4.4 41 371-411 106-150 (256)
47 cd07856 STKc_Sty1_Hog1 Catalyt 23.7 1.1E+02 0.0023 32.0 4.5 46 369-414 111-160 (328)
48 cd06636 STKc_MAP4K4_6 Catalyti 23.6 72 0.0016 31.8 3.1 45 368-412 123-171 (282)
49 smart00219 TyrKc Tyrosine kina 23.3 89 0.0019 30.2 3.6 42 371-412 108-153 (258)
50 PF08006 DUF1700: Protein of u 23.0 1.7E+02 0.0037 28.7 5.5 67 529-597 5-71 (181)
51 cd05081 PTKc_Jak2_Jak3_rpt2 Ca 22.8 1.4E+02 0.003 29.8 5.0 43 372-414 114-160 (284)
52 cd05040 PTKc_Ack_like Catalyti 22.8 1.7E+02 0.0038 28.4 5.6 43 371-413 102-148 (257)
53 cd06641 STKc_MST3 Catalytic do 22.5 71 0.0015 31.9 2.8 44 370-413 105-152 (277)
54 PRK13799 unknown domain/N-carb 22.1 1.3E+02 0.0029 35.2 5.2 68 192-278 238-308 (591)
55 KOG2420 Phosphatidylserine dec 21.9 90 0.002 34.7 3.5 60 155-228 115-182 (382)
56 cd06917 STKc_NAK1_like Catalyt 21.9 1.2E+02 0.0025 30.2 4.1 45 370-414 105-153 (277)
57 cd05038 PTKc_Jak_rpt2 Catalyti 21.4 1.6E+02 0.0035 29.0 5.1 43 371-413 114-160 (284)
58 cd07838 STKc_CDK4_6_like Catal 21.4 1.2E+02 0.0025 30.1 4.0 42 368-409 109-154 (287)
59 cd05114 PTKc_Tec_Rlk Catalytic 21.1 1.3E+02 0.0028 29.5 4.3 45 368-412 102-150 (256)
60 cd06610 STKc_OSR1_SPAK Catalyt 21.0 97 0.0021 30.2 3.4 46 368-413 104-153 (267)
61 cd07847 STKc_CDKL1_4 Catalytic 21.0 1.1E+02 0.0024 30.4 3.7 46 368-413 102-151 (286)
62 cd05037 PTK_Jak_rpt1 Pseudokin 20.9 1.3E+02 0.0027 29.3 4.1 32 372-403 107-138 (259)
63 TIGR02579 cas_csx3 CRISPR-asso 20.9 36 0.00078 30.5 0.3 52 150-203 12-64 (83)
64 cd06638 STKc_myosinIIIA Cataly 20.8 98 0.0021 30.8 3.4 40 369-408 127-170 (286)
65 cd06639 STKc_myosinIIIB Cataly 20.6 91 0.002 31.3 3.1 44 368-411 130-177 (291)
66 cd06623 PKc_MAPKK_plant_like C 20.4 92 0.002 30.3 3.1 44 369-412 102-150 (264)
67 cd05122 PKc_STE Catalytic doma 20.4 90 0.0019 29.7 2.9 34 368-401 100-133 (253)
68 PF10091 Glycoamylase: Putativ 20.4 37 0.0008 35.4 0.3 15 406-420 181-195 (234)
69 cd05572 STKc_cGK_PKG Catalytic 20.3 1.1E+02 0.0023 30.1 3.5 47 368-414 95-145 (262)
70 smart00090 RIO RIO-like kinase 20.2 1E+02 0.0023 31.5 3.5 32 369-400 151-183 (237)
71 cd05087 PTKc_Aatyk1_Aatyk3 Cat 20.1 1.2E+02 0.0026 30.1 3.8 40 368-407 102-145 (269)
No 1
>PRK00029 hypothetical protein; Validated
Probab=100.00 E-value=2.7e-176 Score=1428.54 Aligned_cols=479 Identities=49% Similarity=0.834 Sum_probs=447.6
Q ss_pred ccCcccccccccCCCCCCCCCCcccccCcceeecCCCCCCCCCeEEeecHHHHHhCCCCCCCCCCCCcchhccCCcCCCC
Q 006475 103 EDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAG 182 (643)
Q Consensus 103 ~~l~f~~~~~~~Lp~D~~~~~~~R~v~~~~ys~v~P~~~~~~P~lv~~s~~la~~LgLd~~~~~~~~~~~~~sGn~~~~g 182 (643)
..++|+|+|.+. +++||++|.|+| +++|+||++|+++|++||||++++++++++++||||.+++|
T Consensus 6 ~~~~~~~~~~~l--------------~~~~~~~v~p~~-~~~p~l~~~n~~la~~Lgld~~~~~~~~~~~~~sG~~~~~g 70 (487)
T PRK00029 6 LALPFDNRFARL--------------GPAFYTRVAPTP-FPAPRLRFRNDELAALLGLDPEELDDPEFAEVFGGNALLPG 70 (487)
T ss_pred ccCCCCCCHhhc--------------CccceeecCCcc-CCCCEEEEeCHHHHHHcCCCchhcCCHHHHHHhcCCCCCCC
Confidence 345688888653 369999999995 99999999999999999999999999999999999999999
Q ss_pred CCcchhhccccCCCcCCCCCCCcceeeeceeecCCCceeEeeeecCCCCCccccCCcccchhhhhHHHHHHHHhhhcCCC
Q 006475 183 AVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIP 262 (643)
Q Consensus 183 ~~P~A~~YaGHQFG~fagQLGDGRAilLGEv~~~~G~r~ElQLKGAG~TPySR~gDGRAVLRSsIREyL~SEAMhaLGIP 262 (643)
+.|+||||+|||||+|||||||||||+||||++++|+||||||||||+|||||+|||||||||||||||||||||+||||
T Consensus 71 ~~P~A~~YaGHQFG~~~pqLGDGRailLGEv~~~~g~~~dlqLKGsG~TPySR~gDGRAvLrssiREyL~SEAMhaLGIP 150 (487)
T PRK00029 71 MEPLAMVYHGHQFGVYNPQLGDGRGILLGEVRDADGRLYDLQLKGAGRTPYSRMGDGRAVLRSSIREYLASEAMHALGIP 150 (487)
T ss_pred cchHHHHHhcccCCCCCCCCCCcceEEEEEEECCCCCEEEEeccCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEecCCeeeeccccCCCCCCCCceEEEeecCCceeecchhhhhccCCCCHHHHHHHHHHHHHhhcCcccccccc
Q 006475 263 TTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKS 342 (643)
Q Consensus 263 TTRALslv~s~~~V~Re~~y~g~~~~EpgAVv~RvApShIRfGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~~ 342 (643)
||||||||+||++|+|+ +.||||||||||+|||||||||+|+++ ++.+.|++|+||||++|||++.+
T Consensus 151 TTRaLalv~tge~V~R~-------~~e~gAvl~RvA~ShiRfGtFe~~a~~--~~~~~l~~L~dy~I~~hyP~~~~---- 217 (487)
T PRK00029 151 TTRALSLVETGEPVYRE-------SPERGAVLTRVAPSHIRFGTFERFAYR--GDPELLRQLADYVIARHYPELAD---- 217 (487)
T ss_pred ccceEEEEecCCceecC-------CCCceeEEEEecCccccceeehhhhhc--CCHHHHHHHHHHHHHHHCccccc----
Confidence 99999999999999999 689999999999999999999999999 68999999999999999999976
Q ss_pred ccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCceeeeeeecccccccccCCCCCCCCC
Q 006475 343 ESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPN 422 (643)
Q Consensus 343 ~~~~f~~~~~~~~~~~~~~~~y~~l~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlTIDYGPfaFmD~fdP~~v~N 422 (643)
.+++|++||++||+|||+|||+||+|||||||||||||||+|+|||||||||||.|||+||||
T Consensus 218 -----------------~~~~y~~~~~~Vv~rtA~lvA~Wq~vGFvHGVmNTDNmsI~GeTiDYGP~aFmd~ydp~~v~n 280 (487)
T PRK00029 218 -----------------AEDPYLALFAEVVERTARLIAQWQAVGFVHGVMNTDNMSILGETIDYGPYGFLDDYDPGFTCN 280 (487)
T ss_pred -----------------cccHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcCceeeeeeccCCchhhhhhcCCCcccc
Confidence 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccCChhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---cchHHHHHHHH
Q 006475 423 TTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLP---KYNKQIISKLL 499 (643)
Q Consensus 423 ~sD~~G~RYaf~nQP~I~~WNL~rLaeaL~p~~li~~~~a~~~L~~y~~~f~~~y~~~m~~KLGL~---~~d~~Li~~ll 499 (643)
|||++| ||||+|||+|++|||+|||+||.| ||+.+.++++|++|.++|+++|.++|++||||. +.|.+||++||
T Consensus 281 ~~D~~G-RYaf~nQP~i~~WNL~rLa~aL~p--li~~~~~~~~L~~f~~~~~~~~~~~m~~KLGL~~~~~~d~~Li~~ll 357 (487)
T PRK00029 281 HSDHQG-RYAFGNQPAIALWNLARLAQALLP--LIAVEALQAALDRFGDAYQAAYRARMRAKLGLFTEEEEDNALLNALL 357 (487)
T ss_pred cCCCCc-cccccCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHH
Confidence 999998 999999999999999999999996 888888999999999999999999999999995 34789999999
Q ss_pred HHHHhCCCChhHHHHHhhccCCCCCCCcchhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhcCC
Q 006475 500 NNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNP 579 (643)
Q Consensus 500 ~lm~~~~~DfT~~FR~Ls~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Wl~~y~~rl~~~~~~~~~r~~~M~~~NP 579 (643)
++|+++++|||+|||.|++...... ...+.+.+.+ .+.|.+|+++|++||..+..+.++|++.|+++||
T Consensus 358 ~~m~~~~~D~t~~Fr~L~~~~~~~~------~~~l~~~~~~-----~~~~~~W~~~y~~rl~~~~~~~~~r~~~M~~~NP 426 (487)
T PRK00029 358 ALMARSRADYTLTFRRLSLAEDASA------ASPLRDLFID-----RAAFDAWLARYRARLAQEPVSDAERQQAMRAVNP 426 (487)
T ss_pred HHHHHcCCCchHHHHHhhhccCccc------hhhhhhhccC-----HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHccCC
Confidence 9999999999999999986421111 1123333433 4679999999999999888889999999999999
Q ss_pred CcccchhhHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCccccccccCCCcccCCCCceeeccCC
Q 006475 580 KYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYRPGVCMLSCSS 643 (643)
Q Consensus 580 ~fIlRN~~~eeaI~~Ae~GD~s~~~~L~~~l~~Py~~~~~~e~y~~~pp~~~~~~~~~~~SCSS 643 (643)
+||||||++|+||++||+|||+++++|+++|++||+++++.++|+.+||+|+. ++++||||
T Consensus 427 ~~ilRN~~~e~ai~~Ae~gD~s~~~~ll~~l~~Py~~~~~~~~~~~~pp~~~~---~~~~~Css 487 (487)
T PRK00029 427 KYVLRNYLAEQAIEAAEEGDWSELERLLEVLRRPYDEQPEFEAYAARPPDWGK---HLEVSCSS 487 (487)
T ss_pred ceeccHHHHHHHHHHHHcCChHHHHHHHHHHhCccccCcchhhhccCCCcccC---eeeecCCC
Confidence 99999999999999999999999999999999999999999999999999964 35699998
No 2
>COG0397 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.2e-172 Score=1363.99 Aligned_cols=480 Identities=43% Similarity=0.719 Sum_probs=453.4
Q ss_pred cccCcccccccccCCCCCCCCCCcccccCcceeecCCCCCCCCCeEEeecHHHHHhCCCCCCCCCCCCcchhccCCcCCC
Q 006475 102 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLA 181 (643)
Q Consensus 102 l~~l~f~~~~~~~Lp~D~~~~~~~R~v~~~~ys~v~P~~~~~~P~lv~~s~~la~~LgLd~~~~~~~~~~~~~sGn~~~~ 181 (643)
...++|+++|..++ +.||+.|.|+| +++|+|+++|+++|..||||++++++++|+++|+|+++++
T Consensus 5 ~~~~~~~~r~~~l~--------------~~~~t~v~p~p-~~~~~L~~~n~~la~~LgL~~~~~~~~~~~~~f~G~~v~~ 69 (488)
T COG0397 5 QAALKFDPRFASLG--------------GEFYTPVTPAP-FPNPRLRWRNDRLAATLGLDPSLLDDEAFAEVFGGFQVLN 69 (488)
T ss_pred ccccCccHHHHhhc--------------hhhhcCcCCcc-CCCceeeeeCHhHHHhcCCChHhccChhHHHHhccCCCCC
Confidence 45677888888654 59999999995 9999999999999999999999999999999999999999
Q ss_pred CCCcchhhccccCCCcCCCCCCCcceeeeceeecCCCceeEeeeecCCCCCccccCCcccchhhhhHHHHHHHHhhhcCC
Q 006475 182 GAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGI 261 (643)
Q Consensus 182 g~~P~A~~YaGHQFG~fagQLGDGRAilLGEv~~~~G~r~ElQLKGAG~TPySR~gDGRAVLRSsIREyL~SEAMhaLGI 261 (643)
|+.|+||+|+|||||.|+|||||||+|+|||+.+++|+++||||||||+|||||+|||||||||||||||||||||+|||
T Consensus 70 ~~~plA~~Y~GhQFG~~~~qLGDGR~ilLgE~~~~~G~~~diqlKGaG~TPySR~gDGRAvLrssiRE~l~SEAmh~LGI 149 (488)
T COG0397 70 GAPPLAMRYSGHQFGVYNPQLGDGRGFLLGELRGADGELFDIQLKGAGRTPYSRGGDGRAVLRSSIREYLASEALHALGI 149 (488)
T ss_pred CCChhhhhhcccccccccCccCCceeeeeeeeecCCCcEEEEEeccCCCCCccccCCcchhhhhhHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEecCCeeeeccccCCCCCCCCceEEEeecCCceeecchhhhhccCCCCHHHHHHHHHHHHHhhcCccccccc
Q 006475 262 PTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNK 341 (643)
Q Consensus 262 PTTRALslv~s~~~V~Re~~y~g~~~~EpgAVv~RvApShIRfGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~ 341 (643)
|||||||||+||++|+|+ ..||||||||||||||||||||+|+++ ++.+.+|+|+||||++|||++..
T Consensus 150 pTTRaL~lv~tg~~v~Re-------~~ep~Avl~R~A~ShIRfGtFe~f~~~--~~~e~l~~LaD~vI~~~~p~~~~--- 217 (488)
T COG0397 150 PTTRALSLVETGEPVQRE-------DEEPSAVLTRLAPSHIRFGTFERFAYR--DRRDLLRQLADHVIEHYFPDLAD--- 217 (488)
T ss_pred CCcceeeeecCCCceecc-------ccccceEEEEecccceeeeccchhhhc--CChHHHHHHHHHHHHHhchhhhc---
Confidence 999999999999999999 589999999999999999999999999 68999999999999999999985
Q ss_pred cccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCceeeeeeecccccccccCCCCCCCC
Q 006475 342 SESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTP 421 (643)
Q Consensus 342 ~~~~~f~~~~~~~~~~~~~~~~y~~l~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlTIDYGPfaFmD~fdP~~v~ 421 (643)
..+++|++||++||+|||+|||+||+|||||||||||||||+|+|||||||||||.|||+|||
T Consensus 218 -----------------~~e~~Y~~~fr~Vv~R~A~lvA~Wqa~GF~HGVmNTDNmSI~GeTiDYGP~aFld~ydp~f~~ 280 (488)
T COG0397 218 -----------------ESERPYAALFRAVVSRSARLVARWMAAGFVHGVLNTDNMSITGETFDYGPFAFLDRYDPNFVA 280 (488)
T ss_pred -----------------cCcchHHHHHHHHHHHHHHHHHHHHHhccccceeccCCceeecccccccceecccCCCCCccc
Confidence 146799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCChhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---cchHHHHHHH
Q 006475 422 NTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLP---KYNKQIISKL 498 (643)
Q Consensus 422 N~sD~~G~RYaf~nQP~I~~WNL~rLaeaL~p~~li~~~~a~~~L~~y~~~f~~~y~~~m~~KLGL~---~~d~~Li~~l 498 (643)
||+|+.| ||+|+|||.|++|||+|||++|+| ||+.+.++++|++|.++|+++|..+|++||||. ++|.+||++|
T Consensus 281 n~~D~~G-RY~f~nQP~I~~WNL~~LA~~L~p--li~~~~~~~aL~~y~~~~~~~~~~~m~~kLGl~~~~e~d~~Lv~~l 357 (488)
T COG0397 281 NHFDHAG-RYSFGNQPEIAFWNLQRLAGALSP--LIDQAALEAALNSFSDLYRAAYRGLMRDRLGLKSGAEEDIALVNTL 357 (488)
T ss_pred ccccccc-cccccCCchHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHH
Confidence 9999988 999999999999999999999995 999999999999999999999999999999998 5689999999
Q ss_pred HHHHHhCCCChhHHHHHhhccCCCCCCCcchhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhcC
Q 006475 499 LNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVN 578 (643)
Q Consensus 499 l~lm~~~~~DfT~~FR~Ls~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Wl~~y~~rl~~~~~~~~~r~~~M~~~N 578 (643)
|++|+++++|||+|||.|+...... -...+...+.| +++|++|+.+|++|+..+..++.+|. +|+++|
T Consensus 358 l~~l~~~~~Dyt~~Fr~L~~~~~~~------~~~~l~~~f~D-----r~~~~~W~~~y~~rl~~~~~~~~~~~-~m~~vN 425 (488)
T COG0397 358 LRLLAESGVDYTWFFRFLSWFGGWA------AAEELALRFID-----RAGFDAWEARYRLRLALEDFDPDRRI-AMRLVN 425 (488)
T ss_pred HHHHHHcCCCHHHHHHHHhhccccc------cchHHHHhcCC-----HHHHHHHHHHHHHHhccCCCCchhHH-HHHhcC
Confidence 9999999999999999999875411 12345556665 56799999999999999988888887 999999
Q ss_pred CCcccchhhHHHHHHHHHcC-CHHHHHHHHHHHhCCCCCCccccccccCCCcccCCCCceeeccCC
Q 006475 579 PKYVLRNYLCQSAIDAAELG-DFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYRPGVCMLSCSS 643 (643)
Q Consensus 579 P~fIlRN~~~eeaI~~Ae~G-D~s~~~~L~~~l~~Py~~~~~~e~y~~~pp~~~~~~~~~~~SCSS 643 (643)
|+||||||++|+||++|++| |++++++|++++++||+++++.+.|+.+||+|+++ .++||||
T Consensus 426 P~~vlRn~~~e~aie~a~~~~d~~~~~~L~~~l~~Pf~~~~g~e~ya~~~~~~~~~---~~~sCss 488 (488)
T COG0397 426 PAFVLRNPLAEEAIEAAAEGSDFAEFHDLGKVLANPFEDDPGREAYALGPADWGKR---LETSCSS 488 (488)
T ss_pred CccccccHHHHHHHHHHHhCCChHHHHHHHHHhcCCCCCCcchHHHhCCCCCcchh---hccccCC
Confidence 99999999999999999998 99999999999999999999999999999999876 4689998
No 3
>PF02696 UPF0061: Uncharacterized ACR, YdiU/UPF0061 family; InterPro: IPR003846 The proteins in this entry are functionally uncharacterised.
Probab=100.00 E-value=8.8e-166 Score=1349.05 Aligned_cols=454 Identities=52% Similarity=0.861 Sum_probs=408.4
Q ss_pred cccccCcceeecCCCCCCC---CCeEEeecHHHHHhCCCCCCCCCCCCcchh-ccCCcCCCC-CCcchhhccccCCCcCC
Q 006475 125 PREVLHACYTKVSPSAEVE---NPQLVAWSESVADSLELDPKEFERPDFPLF-FSGATPLAG-AVPYAQCYGGHQFGMWA 199 (643)
Q Consensus 125 ~R~v~~~~ys~v~P~~~~~---~P~lv~~s~~la~~LgLd~~~~~~~~~~~~-~sGn~~~~g-~~P~A~~YaGHQFG~fa 199 (643)
.+.+.+.+|+.+.|+| +. +|+||++|+++|++|||+++++++++++++ ++|+++++| +.|+||||+|||||+|+
T Consensus 9 ~~~~~~~~~~~~~p~~-~~~~~~p~lv~~n~~la~~Lgl~~~~~~~~~~~~~~~~g~~~~~g~~~p~A~~YaGHQFG~~~ 87 (487)
T PF02696_consen 9 ESALLSLFYSFVSPVP-PAPFPNPRLVAFNDDLAEELGLDPSELESPEFAEFVFSGNKLLPGSAEPLAQAYAGHQFGQFA 87 (487)
T ss_pred hHhhhccCCceecccc-CCCCCCCEEEEECHHHHHHcCCChhHcCChhHHHHhhhhhccCCCCcchHHHHHcCCCCCCCC
Confidence 3455678888888875 55 999999999999999999999999999987 899999999 99999999999999999
Q ss_pred CCCCCcceeeeceeecCCCceeEeeeecCCCCCccccCCcccchhhhhHHHHHHHHhhhcCCCCcceeEEEecC-Ceeee
Q 006475 200 GQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTG-KFVTR 278 (643)
Q Consensus 200 gQLGDGRAilLGEv~~~~G~r~ElQLKGAG~TPySR~gDGRAVLRSsIREyL~SEAMhaLGIPTTRALslv~s~-~~V~R 278 (643)
|||||||||+||||++++|++|||||||||+|||||+|||||||||||||||||||||+||||||||||||+|+ +.|+|
T Consensus 88 ~qLGDGRailLgE~~~~~g~~~dlqLKGaG~TPySR~gDGrAvLrssIREyL~SEAm~aLGIPTTRaLalv~t~~~~v~r 167 (487)
T PF02696_consen 88 PQLGDGRAILLGEVRDPDGQRWDLQLKGAGRTPYSRGGDGRAVLRSSIREYLCSEAMHALGIPTTRALALVTTGEEPVRR 167 (487)
T ss_pred CccCCcceEEeeeeecCCCcEEEEeccCCCCCCCccCCCCcchHHHHHHHHHHHHHHHhCCCCccceeEEEEcCCeeEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 68888
Q ss_pred ccccCCCCCCCCceEEEeecCCceeecchhhhhccCCCCHHHHHHHHHHHHHhhcCccccccccccccCCCCCCCCcccc
Q 006475 279 DMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVD 358 (643)
Q Consensus 279 e~~y~g~~~~EpgAVv~RvApShIRfGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~~~~~~f~~~~~~~~~~~ 358 (643)
+ +.||||||||||||||||||||+|++| ++.+.|++|+||||++||||+..- ..
T Consensus 168 ~-------~~ep~Avv~RvA~S~iR~GsFe~~~~~--~~~~~l~~L~dy~i~~~~pe~~~~-----------------~~ 221 (487)
T PF02696_consen 168 E-------TPEPGAVVTRVAPSHIRFGSFEYFAYR--GDPEGLRQLADYVIKRHYPEIQGH-----------------LA 221 (487)
T ss_pred C-------CCCCceEEEeccccceeeeeeehhhhc--CCHHHHHHHHHHHHHHhCCccccc-----------------cc
Confidence 8 689999999999999999999999999 689999999999999999987530 01
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCceeeeeeecccccccccCCCCCCCCCCCCCCCCccccCChhH
Q 006475 359 LTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPD 438 (643)
Q Consensus 359 ~~~~~y~~l~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlTIDYGPfaFmD~fdP~~v~N~sD~~G~RYaf~nQP~ 438 (643)
.++++|++||++||+|||+|||+||+|||||||||||||||+|+|||||||||||.|||+|||||||++| ||||+|||+
T Consensus 222 ~~~~~y~~~~~~v~~rtA~lvA~Wq~vGF~HGVmNTDNmsi~G~TiDYGP~aFmd~ydp~~v~n~~D~~g-RYaf~nQP~ 300 (487)
T PF02696_consen 222 DDEDPYLALLREVVERTAELVAQWQAVGFCHGVMNTDNMSILGETIDYGPFAFMDDYDPNFVCNHSDHQG-RYAFGNQPS 300 (487)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCeeeeeeEeccCccccccCCCCCceecccCCCC-cccccCcHH
Confidence 1457999999999999999999999999999999999999999999999999999999999999999987 999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-----------cchHHHHHHHHHHHHhCCC
Q 006475 439 IGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLP-----------KYNKQIISKLLNNMAVDKV 507 (643)
Q Consensus 439 I~~WNL~rLaeaL~p~~li~~~~a~~~L~~y~~~f~~~y~~~m~~KLGL~-----------~~d~~Li~~ll~lm~~~~~ 507 (643)
|++|||.|||+||.| ||++++++++|++|+++|+++|.++|++||||. +.|.+||++||++|+++++
T Consensus 301 i~~WNL~~La~aL~p--li~~~~l~~~L~~f~~~f~~~y~~~m~~KLGL~~~~~~~~~~~~e~d~~Li~~ll~lm~~~~~ 378 (487)
T PF02696_consen 301 IALWNLARLAEALLP--LIGEDQLEEALDEFEDVFEAAYLELMRKKLGLDSDLEDALDEQKEGDDELIDELLDLMQESKA 378 (487)
T ss_pred HHHHHHHHHHHHHHH--hcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccCcHHHHHHHHHHHHHHHhhCC
Confidence 999999999999995 999999999999999999999999999999992 1267899999999999999
Q ss_pred ChhHHHHHhhccCCCCCCCcchhhhhHHHHHhhhhhhhHHHHHHHHHHH-HHHHhhc---CCCH---HHHHHHHHhcCCC
Q 006475 508 DYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSY-IQELLSS---GISD---EERKALMNSVNPK 580 (643)
Q Consensus 508 DfT~~FR~Ls~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Wl~~y-~~rl~~~---~~~~---~~r~~~M~~~NP~ 580 (643)
|||+|||.|+++........ ..+...+.+. -..+.|.+|+..| ++||.++ ..++ ++|++.|+++||+
T Consensus 379 DyT~fFR~Ls~~~~~~~~~~----~~l~~~~~~~--~~~~~~~~w~~~y~~~RL~~~~l~~~~~~~~a~r~~~M~~vNP~ 452 (487)
T PF02696_consen 379 DYTNFFRALSEILSDDESDD----ADLFGAFDDF--LDRAAFDEWLARYWRARLQQEYLKALSDEEIAARQARMRSVNPK 452 (487)
T ss_pred CchHHHHHHHHhhhhccchh----hhhhhhhhhc--cchhHHHHHHHHhhhhHHHHHHHhcCChhhHHHHHHHHHHhCCC
Confidence 99999999997532211111 1122111110 0137899999998 8888765 3333 3599999999999
Q ss_pred cccchhhHHHHHHHHHc-CCHHHHHHHHHHHhCCC
Q 006475 581 YVLRNYLCQSAIDAAEL-GDFGEVRRLLKLMERPY 614 (643)
Q Consensus 581 fIlRN~~~eeaI~~Ae~-GD~s~~~~L~~~l~~Py 614 (643)
||||||++|+||++||+ |||+++++|+++|++||
T Consensus 453 yIlRN~l~e~AI~~Ae~~GD~s~~~~Ll~~l~~Py 487 (487)
T PF02696_consen 453 YILRNHLAEEAIEAAEEDGDFSEVHRLLEVLQNPY 487 (487)
T ss_pred ccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence 99999999999999998 99999999999999998
No 4
>KOG2542 consensus Uncharacterized conserved protein (YdiU family) [Function unknown]
Probab=100.00 E-value=2.2e-119 Score=939.73 Aligned_cols=418 Identities=50% Similarity=0.777 Sum_probs=346.4
Q ss_pred eeceeecCCCceeEeeeecCCCCCccccCCcccchhhhhHHHHHHHHhhhcCCCCcceeEEEec-CCeeeeccccCCCCC
Q 006475 209 TLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTT-GKFVTRDMFYDGNPK 287 (643)
Q Consensus 209 lLGEv~~~~G~r~ElQLKGAG~TPySR~gDGRAVLRSsIREyL~SEAMhaLGIPTTRALslv~s-~~~V~Re~~y~g~~~ 287 (643)
++|++....|+|||+||||||+|||||++||||||||||||||||||||+||||||||+++++. |+.++|. +
T Consensus 2 l~gl~~t~tg~~~e~qlkgag~tpfsrfADgkavLrssirefLcseal~~lgipttra~a~~~legtvaqr~-------~ 74 (500)
T KOG2542|consen 2 LLGLVCTATGERWELQLKGAGPTPFSRFADGKAVLRSSIREFLCSEALFHLGIPTTRAGACVTLEGTVAQRP-------K 74 (500)
T ss_pred ccccCCCcccceeeeeeeccCCCchhhhccchHHhhhhHHHHHHHHHHhhcCCcchhhccccCCCccccccc-------c
Confidence 6788888999999999999999999999999999999999999999999999999999999987 5666666 7
Q ss_pred CCCceEEEeecCCceeecchhhhhccCCCCHHHHHHHHHHHHHhhcCccccccccccccCCCCCCCCcccccchhHHHHH
Q 006475 288 EEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAW 367 (643)
Q Consensus 288 ~EpgAVv~RvApShIRfGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~l 367 (643)
.||||||||+||||||||+|++|.++ .++..+.+|.|||++-.|-......++-..+..+++. .++.|+|.+|
T Consensus 75 ~epcaVvcr~apswIr~g~f~lf~~~--~~h~gl~~lsdyc~~~~fk~gd~f~s~~~~~~~~gd~-----~~T~nryaaf 147 (500)
T KOG2542|consen 75 YEPCAVVCRVAPSWIRFGSFELFKSA--DEHTGLAGLSDYCNDIRFKLGDYFISSFYPEIQAGDA-----SDTVNRYAAF 147 (500)
T ss_pred ccceeEEEeecchhhhhhhhHHHhhH--hhhcccccccccchhhhcccCcccccccccccccccc-----hhhhhHHHHH
Confidence 89999999999999999999999999 6889999999999998775443322211111111111 1378999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCceeeeeeecccccccccCCCCCCCCCCCCCCCCccccCChhHHHHHHHHHH
Q 006475 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQF 447 (643)
Q Consensus 368 ~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlTIDYGPfaFmD~fdP~~v~N~sD~~G~RYaf~nQP~I~~WNL~rL 447 (643)
|++|+.|||+|||+||+|||||||+|||||||+|+|||||||||||.|||+|||||+|..| ||+|.|||+||+|||.+|
T Consensus 148 freVa~rtA~tVA~WQavGF~hGVLNTDNmSIlGlTIDYGPFgFLD~ydPsftpNhdD~~g-RYsyanQPdIi~WNL~kl 226 (500)
T KOG2542|consen 148 FREVARRTARTVAEWQAVGFCHGVLNTDNMSILGLTIDYGPFGFLDRYDPSFTPNHDDNTG-RYSYANQPDIIRWNLRKL 226 (500)
T ss_pred HHHHHHHhhHHHHHHhhhcccccccccCCceeeeeeeccCCcccccccCCCCCCCCCCccc-ceeecCCCceeeehHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred HHHhccCCCCCHH----------HH-----------------HHHHHHHHHHHHHHHHHHHHhhcCCccc----------
Q 006475 448 STTLAAAKLIDDK----------EA-----------------NYVMERYGTKFMDEYQAIMTKKLGLPKY---------- 490 (643)
Q Consensus 448 aeaL~p~~li~~~----------~a-----------------~~~L~~y~~~f~~~y~~~m~~KLGL~~~---------- 490 (643)
|++|.| +++.+ ++ +.++++|...|++.|..+|.+||||..+
T Consensus 227 AkaLa~--llg~e~~~a~L~~~~ean~~~d~L~K~~~~~~lve~~~eeyg~~~~~~y~~imskrlglt~d~~~~~ss~n~ 304 (500)
T KOG2542|consen 227 AKALAP--LLGLELGVAILAEEFEANFQRDYLQKMRRYLGLVEVELEEYGALVSKLYETIMSKRLGLTNDFYLLSSSPNE 304 (500)
T ss_pred HHHHHH--hcccchhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhhccCccc
Confidence 999985 54421 12 2368999999999999999999999732
Q ss_pred -hHHHHHHHHHHHHhCCCChhHHHHHhhccCCCCCCC--------cchhh-------hhHH--------HHHhhhhhhhH
Q 006475 491 -NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIP--------EDELL-------VPLK--------AVLLDIGKERK 546 (643)
Q Consensus 491 -d~~Li~~ll~lm~~~~~DfT~~FR~Ls~~~~~~~~~--------~~~~~-------~~l~--------~~~~~~~~~~~ 546 (643)
++.+|.+||++|+++++||+|||+.|++...+..+. +++++ +..+ +.+.++...+.
T Consensus 305 ~~k~~i~~lL~iL~~~kvdy~nff~~l~n~~~P~~~en~~~~a~~~eEll~~~~~~~kl~q~~e~~e~~A~le~~~~an~ 384 (500)
T KOG2542|consen 305 LEKPGIAELLAILMEQKVDYENFFLALRNQMDPRQLENMLMLAQSNEELLALMGTRAKLAQELERVEQQARLEQLSAANL 384 (500)
T ss_pred ccchhHHHHHHHHHHHhcCHHHHHHHhhccCCCcchhhhhhhccccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccch
Confidence 488999999999999999999999999744322211 12333 1111 22333333333
Q ss_pred -----HHHHHHHHHHHHHHhhc--C-----CCHHHHHHHHHhcCCCcccchhhHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q 006475 547 -----EAWISWVLSYIQELLSS--G-----ISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPY 614 (643)
Q Consensus 547 -----~~~~~Wl~~y~~rl~~~--~-----~~~~~r~~~M~~~NP~fIlRN~~~eeaI~~Ae~GD~s~~~~L~~~l~~Py 614 (643)
..|.+|++.|+.|..+. + ..+++++..|..+||+|||||++.|.+|+++|+||||+|++|++++.+||
T Consensus 385 E~R~~new~kw~rny~~ry~~~~~~~g~aar~~~ekkanm~fvnpkyVLrnyi~q~ai~aaeegDfSevkkv~kl~~~Py 464 (500)
T KOG2542|consen 385 ESRNQNEWAKWLRNYRARYDKDLEGAGDAARWQAEKKANMHFVNPKYVLRNYIAQNAIEAAEEGDFSEVKKVLKLLETPY 464 (500)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhccCccchHHHHHHhhccccccChHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcCCc
Confidence 48999999999998763 2 23467788888999999999999999999999999999999999999999
Q ss_pred CCCcccccccc--CCCcccCC----CC-ceeeccCC
Q 006475 615 DEQPGMEKYAR--LPPAWAYR----PG-VCMLSCSS 643 (643)
Q Consensus 615 ~~~~~~e~y~~--~pp~~~~~----~~-~~~~SCSS 643 (643)
+.+++...++. .++-|..+ ++ .++.||||
T Consensus 465 e~t~g~~t~a~~~e~d~ad~r~~~~pk~~~q~sCsS 500 (500)
T KOG2542|consen 465 ECTAGAATDAEATEADGADYRQSSKPKLWAQESCSS 500 (500)
T ss_pred ccccccccccccccCchhhhccCCCchHHHHHhhcC
Confidence 99988877764 33333333 23 45789998
No 5
>KOG2542 consensus Uncharacterized conserved protein (YdiU family) [Function unknown]
Probab=99.52 E-value=5.5e-14 Score=149.44 Aligned_cols=259 Identities=15% Similarity=0.093 Sum_probs=177.6
Q ss_pred eeecCCCCCccccCCcccchhhhhHHHHHHHHhhhcCCCCcceeEEEecCCeeeeccccCCCCCCCCceEEEeecCCcee
Q 006475 224 QLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLR 303 (643)
Q Consensus 224 QLKGAG~TPySR~gDGRAVLRSsIREyL~SEAMhaLGIPTTRALslv~s~~~V~Re~~y~g~~~~EpgAVv~RvApShIR 303 (643)
+|+|.+.|+++++.++.++.+++++++.+++-||-|++++++.||.-+...-+.+.++|.+++..|++.+ ++.+
T Consensus 1 ~l~gl~~t~tg~~~e~qlkgag~tpfsrfADgkavLrssirefLcseal~~lgipttra~a~~~legtva------qr~~ 74 (500)
T KOG2542|consen 1 MLLGLVCTATGERWELQLKGAGPTPFSRFADGKAVLRSSIREFLCSEALFHLGIPTTRAGACVTLEGTVA------QRPK 74 (500)
T ss_pred CccccCCCcccceeeeeeeccCCCchhhhccchHHhhhhHHHHHHHHHHhhcCCcchhhccccCCCcccc------cccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999888877 8889
Q ss_pred ecchhhhhccCCCCHHHHHHHHHHHHHhhcCccccccccccccCCCCCCCCcccccc---hh--HHHHHHHHHHHHHHHH
Q 006475 304 FGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLT---SN--KYAAWAVEVAERTASL 378 (643)
Q Consensus 304 fGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~~~~~~f~~~~~~~~~~~~~---~~--~y~~l~~eVv~RtA~L 378 (643)
++...+..++++.......-.+++.+++|++.+..+....++.|+.++++++....+ .+ ....=+.+..+-.|+.
T Consensus 75 ~epcaVvcr~apswIr~g~f~lf~~~~~h~gl~~lsdyc~~~~fk~gd~f~s~~~~~~~~gd~~~T~nryaaffreVa~r 154 (500)
T KOG2542|consen 75 YEPCAVVCRVAPSWIRFGSFELFKSADEHTGLAGLSDYCNDIRFKLGDYFISSFYPEIQAGDASDTVNRYAAFFREVARR 154 (500)
T ss_pred ccceeEEEeecchhhhhhhhHHHhhHhhhcccccccccchhhhcccCcccccccccccccccchhhhhHHHHHHHHHHHH
Confidence 999999999887778888899999999999998876666677788776655310000 00 0111111111111221
Q ss_pred HHHHHHhhhccccccCCCceeeeeeecccccccccC----CCCCCCCCCCCCCCCccccCChhHHHHHHHHHHHHHhcc-
Q 006475 379 VAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDA----FDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAA- 453 (643)
Q Consensus 379 VA~WQ~vGF~HGVmNTDNmSI~GlTIDYGPfaFmD~----fdP~~v~N~sD~~G~RYaf~nQP~I~~WNL~rLaeaL~p- 453 (643)
-| ||-. -.--+||+.. =+-.-.-=+||. | -|.| |.++--+..|
T Consensus 155 tA---------------~tVA-----~WQavGF~hGVLNTDNmSIlGlTIDY-G-PFgF----------LD~ydPsftpN 202 (500)
T KOG2542|consen 155 TA---------------RTVA-----EWQAVGFCHGVLNTDNMSILGLTIDY-G-PFGF----------LDRYDPSFTPN 202 (500)
T ss_pred hh---------------HHHH-----HHhhhcccccccccCCceeeeeeecc-C-Cccc----------ccccCCCCCCC
Confidence 11 1110 1122344431 111111223333 2 2333 1111111111
Q ss_pred ------------CCCC---CHHH-HHH-------------HHHHHHHHHHHHHHHHHHhhcCCc----cchHHHHHHHHH
Q 006475 454 ------------AKLI---DDKE-ANY-------------VMERYGTKFMDEYQAIMTKKLGLP----KYNKQIISKLLN 500 (643)
Q Consensus 454 ------------~~li---~~~~-a~~-------------~L~~y~~~f~~~y~~~m~~KLGL~----~~d~~Li~~ll~ 500 (643)
.|-| +-.+ |++ .++.++..|.+.|++.|+.++||. ++...++...+.
T Consensus 203 hdD~~gRYsyanQPdIi~WNL~klAkaLa~llg~e~~~a~L~~~~ean~~~d~L~K~~~~~~lve~~~eeyg~~~~~~y~ 282 (500)
T KOG2542|consen 203 HDDNTGRYSYANQPDIIRWNLRKLAKALAPLLGLELGVAILAEEFEANFQRDYLQKMRRYLGLVEVELEEYGALVSKLYE 282 (500)
T ss_pred CCCcccceeecCCCceeeehHHHHHHHHHHhcccchhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 1111 111 246789999999999999999997 457889999999
Q ss_pred HHHhCCCChhHHHHHhhccC
Q 006475 501 NMAVDKVDYTNFFRALSNVK 520 (643)
Q Consensus 501 lm~~~~~DfT~~FR~Ls~~~ 520 (643)
.|...++++|+.|..|+...
T Consensus 283 ~imskrlglt~d~~~~~ss~ 302 (500)
T KOG2542|consen 283 TIMSKRLGLTNDFYLLSSSP 302 (500)
T ss_pred HHHHhccCCcchhhhhccCc
Confidence 99999999999999998754
No 6
>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane
Probab=95.65 E-value=0.06 Score=53.40 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=92.9
Q ss_pred hhhHHHHHHHHhhhcCCCCcceeEEEecCCeeeeccccCCCCCCCCceEEEeecCCceeecchhhhhccCCCCHHHHHHH
Q 006475 245 SSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTL 324 (643)
Q Consensus 245 SsIREyL~SEAMhaLGIPTTRALslv~s~~~V~Re~~y~g~~~~EpgAVv~RvApShIRfGsFE~fa~r~~~d~~~l~~L 324 (643)
-..|||-..+.|+.+||||.+.++........ ...+.++|+--+. ...|
T Consensus 57 ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~-----------~~~s~lite~l~~--------------------~~~L 105 (206)
T PF06293_consen 57 RAKREWRNLQRLREAGIPTPEPVAYGERRKGG-----------GYRSYLITEALPG--------------------AQDL 105 (206)
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCC-----------ceeEEEEEEeCCC--------------------cccH
Confidence 47899999999999999999999986542211 1233444443221 1234
Q ss_pred HHHHHHhhcCccccccccccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCceeeeeee
Q 006475 325 ADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTI 404 (643)
Q Consensus 325 aDy~I~~hyP~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~l~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlTI 404 (643)
.++..+..- . . ...-++++++.|++||+=-..|++||=||+-|+-|-...
T Consensus 106 ~~~~~~~~~--~-----------------------~----~~~~~~ll~~l~~~i~~lH~~gi~H~Dl~~~NILv~~~~- 155 (206)
T PF06293_consen 106 RDLLQQWEQ--L-----------------------D----PSQRRELLRALARLIAKLHDAGIYHGDLNPSNILVDPDD- 155 (206)
T ss_pred HHHHHhhcc--c-----------------------c----hhhHHHHHHHHHHHHHHHHHCcCCCCCCCcccEEEeCCC-
Confidence 444333110 0 0 123467778889999999999999999999999998876
Q ss_pred cccccccccCCCCCCCCCCCCCCCCccccCChhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q 006475 405 DYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERY 469 (643)
Q Consensus 405 DYGPfaFmD~fdP~~v~N~sD~~G~RYaf~nQP~I~~WNL~rLaeaL~p~~li~~~~a~~~L~~y 469 (643)
|++- +.-+|-+..|..-. -+.-..=||++|-.++.. .-+++++....|..|
T Consensus 156 --~~~~----------~~lIDld~~~~~~~-~~~~~~~dL~~L~rs~~~-~~~~~~d~~~fl~~Y 206 (206)
T PF06293_consen 156 --GQYR----------FYLIDLDRMRFRPS-SRRWRAKDLARLLRSLLR-SGWSERDRQRFLRGY 206 (206)
T ss_pred --Ccee----------EEEEcchhceeCCC-ChHHHHHhHHHHHHhccc-cCCCHHHHHHHHhhC
Confidence 2221 11233221122111 233344699999999763 346677766666654
No 7
>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional
Probab=94.21 E-value=1.2 Score=46.70 Aligned_cols=157 Identities=13% Similarity=0.100 Sum_probs=87.4
Q ss_pred hhHHHHHHHHhhhcCCCCcceeEEEecCCeeeeccccCCCCCCCCceEEEeecCCceeecchhhhhccCCCCHHHHHHHH
Q 006475 246 SIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLA 325 (643)
Q Consensus 246 sIREyL~SEAMhaLGIPTTRALslv~s~~~V~Re~~y~g~~~~EpgAVv~RvApShIRfGsFE~fa~r~~~d~~~l~~La 325 (643)
..|||-+-+.|+.+||||...++....+.. +....+-+||+-.+. ...++
T Consensus 75 a~rE~~~l~~L~~~GIptP~pVa~~e~~~~----------~~~~~s~LVte~l~~-----------------~~sL~--- 124 (268)
T PRK15123 75 ADREWRAIHRLHEVGVDTMTGVAFGERGSN----------PATRTSFIITEDLAP-----------------TISLE--- 124 (268)
T ss_pred HHHHHHHHHHHHHcCCCCCCeeEEEEecCC----------CccceeEEEEeeCCC-----------------CccHH---
Confidence 679999999999999999998887422110 012234566653322 01123
Q ss_pred HHHHHhhcCccccccccccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCceeeeeeec
Q 006475 326 DYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTID 405 (643)
Q Consensus 326 Dy~I~~hyP~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~l~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlTID 405 (643)
|++-+.. . . ......-+++.+..|++|++--..|++||=||+-|+-|-..+.+
T Consensus 125 ~~~~~~~--~--~-----------------------~~~~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~~ 177 (268)
T PRK15123 125 DYCADWA--T--N-----------------------PPDPRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFPG 177 (268)
T ss_pred HHHHhhc--c--c-----------------------CCCHHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEeccccC
Confidence 3321110 0 0 00123456788889999999999999999999999998642100
Q ss_pred ccccccccCCCCCCCCCCCCCCCCccccCChhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q 006475 406 YGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERY 469 (643)
Q Consensus 406 YGPfaFmD~fdP~~v~N~sD~~G~RYaf~nQP~I~~WNL~rLaeaL~p~~li~~~~a~~~L~~y 469 (643)
= +.+..+--+|-+..+-.-.--+.-...||.+|--+..+ ..+++..-...+..|
T Consensus 178 ~---------~~~~~~~LIDl~r~~~~~~~~~~~r~~dL~~L~~s~~~-~~ls~~d~~~fl~~Y 231 (268)
T PRK15123 178 R---------EEDLKLSVIDLHRAQIRARVPRRWRDKDLAGLYFSAMD-IGLTQRDILRFLRVY 231 (268)
T ss_pred C---------CCCceEEEEECCcccccCCCChHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHH
Confidence 0 00112223443211111111134557899999877542 235554444444444
No 8
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=75.01 E-value=16 Score=37.07 Aligned_cols=30 Identities=40% Similarity=0.530 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHhhhcCCCCcceeEEEecCC
Q 006475 245 SSIREFLCSEAMHFLGIPTTRALCLVTTGK 274 (643)
Q Consensus 245 SsIREyL~SEAMhaLGIPTTRALslv~s~~ 274 (643)
+.-|||-....++.+|||+.+.+.+...++
T Consensus 38 ~i~~E~~~l~~l~~~glpvP~~~~~~~~~~ 67 (226)
T TIGR02172 38 TIKREFDASRKVFSLGIPTPHPFDLVEDGG 67 (226)
T ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEecCC
Confidence 468999999999999999999999986544
No 9
>PRK14879 serine/threonine protein kinase; Provisional
Probab=70.47 E-value=25 Score=33.81 Aligned_cols=43 Identities=35% Similarity=0.580 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccCCCceeeeee---eccccccc
Q 006475 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT---IDYGPFGF 411 (643)
Q Consensus 369 ~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT---IDYGPfaF 411 (643)
..++...+..++.+...|++||=++.+|+-|.+-+ ||+|-..+
T Consensus 98 ~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~~~~~~liDf~~a~~ 143 (211)
T PRK14879 98 LELSREIGRLVGKLHSAGIIHGDLTTSNMILSGGKIYLIDFGLAEF 143 (211)
T ss_pred HHHHHHHHHHHHHHHhCCcccCCCCcccEEEECCCEEEEECCcccC
Confidence 34555567788999999999999999999885322 45554433
No 10
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=65.51 E-value=30 Score=35.91 Aligned_cols=136 Identities=19% Similarity=0.210 Sum_probs=89.2
Q ss_pred CcccchhhhhHHHHHHHHhhhcCCCCcceeEEEecCCeeeeccccCCCCCCCCceEEEeecCCceeecchhhhhccCCCC
Q 006475 238 DGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQED 317 (643)
Q Consensus 238 DGRAVLRSsIREyL~SEAMhaLGIPTTRALslv~s~~~V~Re~~y~g~~~~EpgAVv~RvApShIRfGsFE~fa~r~~~d 317 (643)
|=+...+-+.+|-=..--++++|||..+-..+=.-+.+++=|. + -
T Consensus 49 D~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~ME~-----------------------------~--~---- 93 (229)
T KOG3087|consen 49 DQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYMEF-----------------------------I--D---- 93 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEEEe-----------------------------c--c----
Confidence 4445566778888888889999999998887755555555441 1 1
Q ss_pred HHHHHHHHHHHHHhhcCccccccccccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCc
Q 006475 318 LDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNM 397 (643)
Q Consensus 318 ~~~l~~LaDy~I~~hyP~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~l~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNm 397 (643)
.-..+.+|.+.+.-++..+ +.+.+++++..+.|++--.-+.|||=|-|-||
T Consensus 94 --g~~~vk~~i~~~~~~~~~d---------------------------~~~~~~~~~iG~~igklH~ndiiHGDLTTSNi 144 (229)
T KOG3087|consen 94 --GASTVKDFILSTMEDESED---------------------------EGLAELARRIGELIGKLHDNDIIHGDLTTSNI 144 (229)
T ss_pred --chhHHHHHHHHHccCcccc---------------------------hhHHHHHHHHHHHHHHhhhCCeecccccccce
Confidence 2245668888875333221 23467788888999999999999999999999
Q ss_pred eeeeeeecccccccccCCCCCCCCCCCCCCCCccccCChhHHHHHHHHHHHHHhc
Q 006475 398 SILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLA 452 (643)
Q Consensus 398 SI~GlTIDYGPfaFmD~fdP~~v~N~sD~~G~RYaf~nQP~I~~WNL~rLaeaL~ 452 (643)
-+---.-++=| ++..|=-+++.+..-..| =.|-.|-.|++
T Consensus 145 ll~~~~~~~~~--~lIdfgls~~s~~~EDKg-------------VDLYVlErA~l 184 (229)
T KOG3087|consen 145 LLRSDGNQITP--ILIDFGLSSVSRLPEDKG-------------VDLYVLERAVL 184 (229)
T ss_pred EEecCCCcCce--EEEeecchhcccCccccc-------------ceeeeehHhHh
Confidence 87543333322 344444556655554444 24556666665
No 11
>PRK09902 hypothetical protein; Provisional
Probab=59.63 E-value=18 Score=37.35 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=73.0
Q ss_pred eeEeeeecCCCCCccccCCcccchhhhhHHHHHHHHhhhcCCCCcceeEEEecCCeeeeccccCCCCCCCCceEEEeecC
Q 006475 220 RWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQ 299 (643)
Q Consensus 220 r~ElQLKGAG~TPySR~gDGRAVLRSsIREyL~SEAMhaLGIPTTRALslv~s~~~V~Re~~y~g~~~~EpgAVv~RvAp 299 (643)
+.+=||+|+=+=|+ |+++ -.|||..=+.|+.+|||+.+..+--. .|.. -.-.+-+||+
T Consensus 48 rq~nhl~~s~r~P~-----g~pt---f~rE~~~L~~L~~~GvPVP~pvf~~~-----~k~~------~~~rA~LVTe--- 105 (216)
T PRK09902 48 RMTHHLFHSVRYPF-----GRPT---IVREVAVIKELERAGVIVPKIVFGEA-----VKIE------GEWRALLVTE--- 105 (216)
T ss_pred eccCcccccccCCC-----CchH---HHHHHHHHHHHHHcCCCCCccceeee-----eccC------CceEEEEEEE---
Confidence 44557777766666 4444 47999999999999999987774421 1110 0112334443
Q ss_pred CceeecchhhhhccCCCCHHHHHHHHHHHHHhhcCccccccccccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 006475 300 SFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLV 379 (643)
Q Consensus 300 ShIRfGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~l~~eVv~RtA~LV 379 (643)
+.+.-+.|.+++.+.--. .+-.++-+.+..+.|++|
T Consensus 106 -----------------~L~g~~~L~~~l~~~~~~---------------------------~~~~~~k~~il~~va~~i 141 (216)
T PRK09902 106 -----------------DMAGFISIADWYAQHAVS---------------------------PYSDEVRQAMLKAVALAF 141 (216)
T ss_pred -----------------eCCCCccHHHHHhcCCcC---------------------------CcchHHHHHHHHHHHHHH
Confidence 122234566664442110 011223456778899999
Q ss_pred HHHHHhhhccccccCCCceee
Q 006475 380 AQWQGVGFTHGVLNTDNMSIL 400 (643)
Q Consensus 380 A~WQ~vGF~HGVmNTDNmSI~ 400 (643)
++=-..|.+||=+|--|+.+-
T Consensus 142 a~LH~~Gv~Hgdly~khIll~ 162 (216)
T PRK09902 142 KKMHSVNRQHGCCYVRHIYVK 162 (216)
T ss_pred HHHHHCCCcCCCCCHhheeec
Confidence 999999999999999999875
No 12
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.33 E-value=9.4 Score=39.15 Aligned_cols=38 Identities=32% Similarity=0.516 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhhccccccCCCceeeee---eecccc
Q 006475 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILGL---TIDYGP 408 (643)
Q Consensus 371 Vv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~Gl---TIDYGP 408 (643)
++++..++|++--.-|+|||=+-|-||-+.|- -||||=
T Consensus 97 ~~r~vG~~vg~lH~~givHGDLTtsNiIl~~~~i~~IDfGL 137 (204)
T COG3642 97 LLREVGRLVGKLHKAGIVHGDLTTSNIILSGGRIYFIDFGL 137 (204)
T ss_pred HHHHHHHHHHHHHhcCeecCCCccceEEEeCCcEEEEECCc
Confidence 66778889999999999999999999999987 578873
No 13
>cd00180 PKc Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which
Probab=58.16 E-value=14 Score=33.50 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCCCceeee--ee---ecccccccc
Q 006475 367 WAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG--LT---IDYGPFGFL 412 (643)
Q Consensus 367 l~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~G--lT---IDYGPfaFm 412 (643)
....++...++.++.....|++||-++.+|+-+.. -. +|||-+.+.
T Consensus 93 ~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~ 143 (215)
T cd00180 93 EILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLL 143 (215)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEEc
Confidence 34556777788888888899999999999999986 23 455555444
No 14
>PRK05231 homoserine kinase; Provisional
Probab=55.95 E-value=53 Score=34.22 Aligned_cols=28 Identities=32% Similarity=0.319 Sum_probs=21.3
Q ss_pred HHhhhccccccCCCceeeeeeecccccccccC
Q 006475 383 QGVGFTHGVLNTDNMSILGLTIDYGPFGFLDA 414 (643)
Q Consensus 383 Q~vGF~HGVmNTDNmSI~GlTIDYGPfaFmD~ 414 (643)
...|+|||=++.||+-+-|- +..|++|-
T Consensus 185 lp~~liHgD~~~~Nil~~~~----~~~~iIDf 212 (319)
T PRK05231 185 LPRGVIHADLFRDNVLFEGD----RLSGFIDF 212 (319)
T ss_pred CCcccCCCCCCCCcEEEECC----ceEEEEec
Confidence 45699999999999998764 23466663
No 15
>PRK11768 serine/threonine protein kinase; Provisional
Probab=52.13 E-value=1.1e+02 Score=32.70 Aligned_cols=47 Identities=28% Similarity=0.249 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhhccccccCCCceeeeeeecccccccccCCC
Q 006475 364 YAAWAVEVAERTASLVAQW-QGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFD 416 (643)
Q Consensus 364 y~~l~~eVv~RtA~LVA~W-Q~vGF~HGVmNTDNmSI~GlTIDYGPfaFmD~fd 416 (643)
+.+.+.++..+..+.++.+ ...|+|||=++.+|+-+ . | |+ +|+|--|
T Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~~liHgD~h~~NvL~-~---d-~~-~iIDFDd 221 (325)
T PRK11768 174 YLAAADQLLAAVEACWARGDVRLLRLHGDCHPGNILW-R---D-GP-HFVDLDD 221 (325)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccceecCCCchhccc-c---C-Cc-EEEeCCC
Confidence 3344444444434444332 24799999999999998 3 4 54 4665443
No 16
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=51.70 E-value=48 Score=30.51 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhh-----hccccccCCCceeeeeeecccccccccCCCCCCCCCCCCCCCCccccCChhHHHHHHHHH
Q 006475 372 AERTASLVAQWQGVG-----FTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQ 446 (643)
Q Consensus 372 v~RtA~LVA~WQ~vG-----F~HGVmNTDNmSI~GlTIDYGPfaFmD~fdP~~v~N~sD~~G~RYaf~nQP~I~~WNL~r 446 (643)
.+..++++++..+.+ ||||=++..|+-+-+- =..++|- ++. +| + --.|.|+.
T Consensus 89 ~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~~~-----~~~liDf---~~a---------~~--~----~~~~Dla~ 145 (170)
T cd05151 89 LEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLDDG-----RLWLIDW---EYA---------GM--N----DPLFDLAN 145 (170)
T ss_pred HHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEECC-----eEEEEec---ccc---------cC--C----ChHHHHHH
Confidence 344567777777776 6999999999987521 1122221 110 01 1 12466666
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHHH
Q 006475 447 FSTTLAAAKLIDDKEANYVMERYGTKF 473 (643)
Q Consensus 447 LaeaL~p~~li~~~~a~~~L~~y~~~f 473 (643)
+...+. ++.++....++.|...|
T Consensus 146 ~~~~~~----~~~~~~~~~~~~y~~~~ 168 (170)
T cd05151 146 FFSEAK----LSEDQEEELLEAYFGRE 168 (170)
T ss_pred HHHhcC----CCHHHHHHHHHHHhCCC
Confidence 655543 67888888888887543
No 17
>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=46.04 E-value=31 Score=34.76 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCCCceeeee----eeccccccccc
Q 006475 367 WAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLD 413 (643)
Q Consensus 367 l~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~Gl----TIDYGPfaFmD 413 (643)
....++...+.-++.+...|++||-++.+|+.+... -+|+|=+..+.
T Consensus 106 ~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~ 156 (287)
T cd06621 106 VLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELV 156 (287)
T ss_pred HHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeecccccccc
Confidence 455677778888888999999999999999988643 36888665543
No 18
>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an
Probab=43.26 E-value=31 Score=33.40 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCceeeeee----ecccccccc
Q 006475 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (643)
Q Consensus 368 ~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYGPfaFm 412 (643)
...++...+.-++.....|++||-+|.+|+-|..-+ +|||-.-.+
T Consensus 105 ~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~ 153 (256)
T cd08530 105 IWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVL 153 (256)
T ss_pred HHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccchhhh
Confidence 344555566667777899999999999999887643 677654333
No 19
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=41.14 E-value=36 Score=32.56 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhhccccccCCCceee
Q 006475 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSIL 400 (643)
Q Consensus 370 eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~ 400 (643)
.++...++.++.....|++||=++.+|+-|-
T Consensus 94 ~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~ 124 (199)
T TIGR03724 94 ELLREIGRLVGKLHKAGIVHGDLTTSNIIVR 124 (199)
T ss_pred HHHHHHHHHHHHHHHCCeecCCCCcceEEEE
Confidence 5677788889999999999999999999874
No 20
>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the
Probab=39.38 E-value=58 Score=32.14 Aligned_cols=48 Identities=15% Similarity=0.027 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCceeeee----eecccccccccCC
Q 006475 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLDAF 415 (643)
Q Consensus 368 ~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~Gl----TIDYGPfaFmD~f 415 (643)
...++...++.++.....|++||-++.+|+-|... -.|||.+-++..-
T Consensus 100 ~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~ 151 (282)
T cd07829 100 IKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARAFGIP 151 (282)
T ss_pred HHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcccccCCC
Confidence 34456667778888888999999999999988652 2588877665443
No 21
>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They
Probab=37.99 E-value=38 Score=32.56 Aligned_cols=46 Identities=11% Similarity=0.053 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCCCceeee----eeecccccccc
Q 006475 367 WAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPFGFL 412 (643)
Q Consensus 367 l~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~G----lTIDYGPfaFm 412 (643)
....++...+.-++....-|++||-++.+|+.|.. .-+|||...+.
T Consensus 104 ~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~ 153 (258)
T cd08215 104 QILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVL 153 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccceeec
Confidence 34566777888888889999999999999988864 12466655443
No 22
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=37.78 E-value=34 Score=34.20 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccCCCceeee
Q 006475 365 AAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG 401 (643)
Q Consensus 365 ~~l~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~G 401 (643)
..++.++.+ .++..+++.|.+||=|++-|+-|..
T Consensus 109 ~~~~~~il~---~~~~~~~~~givHGDLs~~NIlv~~ 142 (188)
T PF01163_consen 109 KELLEEILE---EIIKMLHKAGIVHGDLSEYNILVDD 142 (188)
T ss_dssp HHHHHHHHH---HHHHHHHCTTEEESS-STTSEEEET
T ss_pred HHHHHHHHH---HHHHHHHhcCceecCCChhhEEeec
Confidence 445555544 4666789999999999999998865
No 23
>PF08757 CotH: CotH protein; InterPro: IPR014867 Members of this group include the Bacillus subtilis spore coat protein H (CotH). Assembly of CotH requires both CotE and GerE and is reuired for the correct assembly of both inner and outer layers of the coat. CotH appears to be a structural component of the coat being localised at the interface of the 2 coat layers [, , ].
Probab=36.31 E-value=5e+02 Score=26.80 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=31.4
Q ss_pred EeeeecCCCCCccccCCcccchhhhhHHHHHHHHhhhcCCCCcceeEEEe
Q 006475 222 ELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVT 271 (643)
Q Consensus 222 ElQLKGAG~TPySR~gDGRAVLRSsIREyL~SEAMhaLGIPTTRALslv~ 271 (643)
++.|+..+ .| +|.|||.|+-+.++.+|+||.|+--+..
T Consensus 36 ~~~L~~~~-------~D-----~s~~R~~l~~~l~~~~g~~~p~~~~v~v 73 (323)
T PF08757_consen 36 KWILRANY-------ND-----PSYMRERLAYDLFRDMGVPAPRARYVEV 73 (323)
T ss_pred EEEEECCC-------CC-----chHHHHHHHHHHHHHcCCCCcceEEEEE
Confidence 67777543 34 7999999999999999999999987753
No 24
>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k
Probab=35.41 E-value=2.4e+02 Score=27.40 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccCCCceeeeee----ecccccccc
Q 006475 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (643)
Q Consensus 369 ~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYGPfaFm 412 (643)
.+++...+.-++..-..|++||-++.+|+-|-... +|||-.-..
T Consensus 96 ~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~ 143 (251)
T cd05041 96 LQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREE 143 (251)
T ss_pred HHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeeccccccc
Confidence 33444556666777788999999999999886543 788765443
No 25
>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.
Probab=35.30 E-value=47 Score=32.33 Aligned_cols=44 Identities=23% Similarity=0.114 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccCCCceeeeee----ecccccccc
Q 006475 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (643)
Q Consensus 369 ~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYGPfaFm 412 (643)
..++...+..++....-|++||.++.+|+-|.... +|||=+.++
T Consensus 105 ~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~ 152 (257)
T cd08223 105 VEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVL 152 (257)
T ss_pred HHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEEe
Confidence 44555666777788899999999999999885432 577766555
No 26
>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops
Probab=35.05 E-value=43 Score=32.45 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhhhccccccCCCceeeeee----ecccccccccCCC
Q 006475 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLDAFD 416 (643)
Q Consensus 370 eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYGPfaFmD~fd 416 (643)
.++...++.++.....|++||-++.+|+-+.--. +|+|-+..+....
T Consensus 106 ~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~ 156 (258)
T cd06632 106 LYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFS 156 (258)
T ss_pred HHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceeccccc
Confidence 3455677788888999999999999998775322 6888776665444
No 27
>PRK02561 psbF cytochrome b559 subunit beta; Provisional
Probab=33.95 E-value=17 Score=28.74 Aligned_cols=13 Identities=54% Similarity=0.769 Sum_probs=10.1
Q ss_pred HhhhcCCCCccee
Q 006475 255 AMHFLGIPTTRAL 267 (643)
Q Consensus 255 AMhaLGIPTTRAL 267 (643)
|.|+|||||-==|
T Consensus 21 AvhalavPtVfFl 33 (44)
T PRK02561 21 AVHALGVPTVFFL 33 (44)
T ss_pred hhhccccCceeec
Confidence 7899999995433
No 28
>COG4453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.95 E-value=54 Score=30.08 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHhCCCCCCccccccccCCCccc
Q 006475 598 GDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 631 (643)
Q Consensus 598 GD~s~~~~L~~~l~~Py~~~~~~e~y~~~pp~~~ 631 (643)
=|-....+++.+|.+|.+.++..++....++.|.
T Consensus 60 L~e~~~~~fl~~LD~P~~pn~~L~~a~~r~~~~~ 93 (95)
T COG4453 60 LDEEDYRRFLAALDNPPSPNPKLKRAMARKSPWE 93 (95)
T ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHhcccccc
Confidence 4677789999999999999999988888888885
No 29
>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.
Probab=31.57 E-value=1.3e+02 Score=30.60 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccCCCceee
Q 006475 365 AAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSIL 400 (643)
Q Consensus 365 ~~l~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~ 400 (643)
..++.+++...++| ++..|.|||=+++-|+.+.
T Consensus 127 ~~i~~~i~~~l~~l---~H~~glVHGDLs~~NIL~~ 159 (197)
T cd05146 127 KNAYYQVLSMMKQL---YKECNLVHADLSEYNMLWH 159 (197)
T ss_pred HHHHHHHHHHHHHH---HHhCCeecCCCCHHHEEEE
Confidence 34455555555554 6788999999999999985
No 30
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=31.48 E-value=3e+02 Score=31.51 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCceeee---eeecccccccc
Q 006475 364 YAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG---LTIDYGPFGFL 412 (643)
Q Consensus 364 y~~l~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~G---lTIDYGPfaFm 412 (643)
+..-..+++...|+.++.....|++||=++.+|+-|-. .-||+|=..+.
T Consensus 426 ~l~~~~~~~~~i~~~L~~lH~~giiHrDlkp~NILl~~~~~~liDFGla~~~ 477 (535)
T PRK09605 426 VLEGNPELVRKVGEIVAKLHKAGIVHGDLTTSNFIVRDDRLYLIDFGLGKYS 477 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCCCChHHEEEECCcEEEEeCcccccC
Confidence 33334677888899999999999999999999999821 12566655554
No 31
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=30.75 E-value=64 Score=27.94 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHH---hhhccccccCCCceeee
Q 006475 370 EVAERTASLVAQWQG---VGFTHGVLNTDNMSILG 401 (643)
Q Consensus 370 eVv~RtA~LVA~WQ~---vGF~HGVmNTDNmSI~G 401 (643)
.+....++.++.+.. .|++||=++.+|+-|..
T Consensus 90 ~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~ 124 (155)
T cd05120 90 DIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDD 124 (155)
T ss_pred HHHHHHHHHHHHHhCCCceEEEecCCCcceEEEEC
Confidence 345556666777776 48999999999999864
No 32
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=30.43 E-value=2.2e+02 Score=27.94 Aligned_cols=50 Identities=24% Similarity=0.429 Sum_probs=37.0
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHhhcCCccchHHHHHHHH
Q 006475 444 IAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQ-----AIMTKKLGLPKYNKQIISKLL 499 (643)
Q Consensus 444 L~rLaeaL~p~~li~~~~a~~~L~~y~~~f~~~y~-----~~m~~KLGL~~~d~~Li~~ll 499 (643)
|+.|-..|. -+++++.+++++.|++.|.++.. +...++||=+ +++..+++
T Consensus 7 L~~L~~~L~---~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P---~~iA~~i~ 61 (181)
T PF08006_consen 7 LNELEKYLK---KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSP---KEIAREIL 61 (181)
T ss_pred HHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCH---HHHHHHHH
Confidence 567777777 47999999999999999998774 5566778854 33444444
No 33
>PRK12790 chemotactic signal-response protein CheL; Provisional
Probab=29.09 E-value=2.6e+02 Score=26.62 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=38.2
Q ss_pred ccccCChhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006475 430 RYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKK 484 (643)
Q Consensus 430 RYaf~nQP~I~~WNL~rLaeaL~p~~li~~~~a~~~L~~y~~~f~~~y~~~m~~K 484 (643)
-|.|+.+|++ ++|+++....--+..+++++-+.|+..|.....+-|+.-
T Consensus 14 ~~~~~~~~~~------~~a~a~~~~sp~~~aklreaAqqFEa~FL~~MLKsMr~t 62 (115)
T PRK12790 14 APTYNGRPDI------ELAEALEKVSPQAQAKAKATATDFEAMFLNSMFSQMTSG 62 (115)
T ss_pred ccccCCCCCH------HHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5889999986 567777531112466789999999999999999999974
No 34
>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They
Probab=28.56 E-value=48 Score=32.71 Aligned_cols=41 Identities=20% Similarity=0.132 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccCCCceeeeee----eccccc
Q 006475 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPF 409 (643)
Q Consensus 369 ~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYGPf 409 (643)
..++...++-++.+...|++||-++.+|+.|.... +|||..
T Consensus 101 ~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~ 145 (283)
T cd05118 101 KSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLA 145 (283)
T ss_pred HHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeee
Confidence 44556677778888999999999999999887422 466644
No 35
>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a
Probab=28.13 E-value=73 Score=30.93 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCceeeeee----eccccccc
Q 006475 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGF 411 (643)
Q Consensus 368 ~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYGPfaF 411 (643)
...++...++-++.....|++||-++.+|+-+.... .|+|-+-.
T Consensus 101 ~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~ 148 (256)
T cd06612 101 IAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQ 148 (256)
T ss_pred HHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchh
Confidence 344566667777888899999999999998775432 45554333
No 36
>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I
Probab=27.62 E-value=59 Score=31.76 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCceeeee----eecccccccc
Q 006475 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFL 412 (643)
Q Consensus 368 ~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~Gl----TIDYGPfaFm 412 (643)
...++...++.++.....|++||=++.+|+.|... -+|+|-..++
T Consensus 115 ~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~ 163 (275)
T cd06608 115 IAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQL 163 (275)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCccceec
Confidence 44566667777788889999999999999988643 2566655544
No 37
>TIGR02904 spore_ysxE spore coat protein YsxE. Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.
Probab=27.16 E-value=60 Score=34.07 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=38.8
Q ss_pred HhhhccccccCCCceeeeeeecccccccccCCCCCCCCCCCCCCCCccccCChhHHHHHHHHHHHHHhccCCCCCHHHHH
Q 006475 384 GVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEAN 463 (643)
Q Consensus 384 ~vGF~HGVmNTDNmSI~GlTIDYGPfaFmD~fdP~~v~N~sD~~G~RYaf~nQP~I~~WNL~rLaeaL~p~~li~~~~a~ 463 (643)
..|+|||=++.||+.+.|. |-.+++| || +.+ .|..-. |++.|=...+- .. -.+.+.+.
T Consensus 195 ~~~lcHgD~~~~Nvl~~~~----~~~~iID-fd--~~~--~d~~~~--------DLa~~~~~~~~-~~----~~~~~~~~ 252 (309)
T TIGR02904 195 RTVLVHGKLSLSHFLYDET----RGGYFIN-FE--KAS--FASPLT--------DLAAFFRRSFG-TY----PQPIDEMF 252 (309)
T ss_pred ceeeeCCCCcHHhEEEcCC----CCEEEEE-hh--hcc--cCCcHH--------HHHHHHHHHHh-hC----CCChHHHH
Confidence 5699999999999999652 4566665 33 332 333332 66654333222 21 13445677
Q ss_pred HHHHHHHH
Q 006475 464 YVMERYGT 471 (643)
Q Consensus 464 ~~L~~y~~ 471 (643)
++|+.|..
T Consensus 253 ~~l~~Y~~ 260 (309)
T TIGR02904 253 EWFYTYEK 260 (309)
T ss_pred HHHHHHHh
Confidence 77777654
No 38
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=26.82 E-value=5.8e+02 Score=28.74 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=58.7
Q ss_pred HHhhhccccccCCCceeeee----eecccccccccCCCCCCCCCCCCCCCCccccCChh-HHHHHHHHHHHHHhccCCCC
Q 006475 383 QGVGFTHGVLNTDNMSILGL----TIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQP-DIGLWNIAQFSTTLAAAKLI 457 (643)
Q Consensus 383 Q~vGF~HGVmNTDNmSI~Gl----TIDYGPfaFmD~fdP~~v~N~sD~~G~RYaf~nQP-~I~~WNL~rLaeaL~p~~li 457 (643)
...||+||=++-.|+-|..- =||+|=.+-++.- .|+.+..== .+..-+...+++.+.....+
T Consensus 274 ~~~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~~-------------~r~~l~~l~~a~~~~D~~~l~~~l~~~g~~ 340 (437)
T TIGR01982 274 LRDGFFHADLHPGNIFVLKDGKIIALDFGIVGRLSEE-------------DRRYLAEILYGFLNRDYRRVAEVHFDAGYV 340 (437)
T ss_pred HhCCceeCCCCcccEEECCCCcEEEEeCCCeeECCHH-------------HHHHHHHHHHHHHhcCHHHHHHHHHHcCCC
Confidence 46799999999999988532 3577665555421 122221000 12233344555555421122
Q ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--c-chHHHHHHHHHHHHhCCC----ChhHHHHHhhcc
Q 006475 458 ----DDKEANYVMERYGTKFMDEYQAIMTKKLGLP--K-YNKQIISKLLNNMAVDKV----DYTNFFRALSNV 519 (643)
Q Consensus 458 ----~~~~a~~~L~~y~~~f~~~y~~~m~~KLGL~--~-~d~~Li~~ll~lm~~~~~----DfT~~FR~Ls~~ 519 (643)
+.+...+.++ .++..-.|.. + .-.+++.++++++.++++ +|+..+|.|..+
T Consensus 341 ~~~~d~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~r~l~~l 402 (437)
T TIGR01982 341 PSDTDMAEFEQAIR-----------AIGEPIFGQPLKEISVGRLLAGLFKITRDFNMELQPQLLLLQKTLLTV 402 (437)
T ss_pred CCCCCHHHHHHHHH-----------HHHHHHhCCChhhCCHHHHHHHHHHHHHHCCccCCHHHHHHHHHHHHH
Confidence 2222222222 2222222322 2 135788889999887765 777777877654
No 39
>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity
Probab=26.71 E-value=44 Score=32.73 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHH-hhhccccccCCCceeeee----eecccccccc
Q 006475 368 AVEVAERTASLVAQWQG-VGFTHGVLNTDNMSILGL----TIDYGPFGFL 412 (643)
Q Consensus 368 ~~eVv~RtA~LVA~WQ~-vGF~HGVmNTDNmSI~Gl----TIDYGPfaFm 412 (643)
...++...++-++.... .|++||-++.+|+.|.-- -+|+|-..++
T Consensus 102 ~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~ 151 (265)
T cd06605 102 LGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQL 151 (265)
T ss_pred HHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchhh
Confidence 34566777788888888 999999999999877532 1566654443
No 40
>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines
Probab=26.71 E-value=55 Score=32.80 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhhhccccccCCCceeeee----eeccc
Q 006475 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYG 407 (643)
Q Consensus 370 eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~Gl----TIDYG 407 (643)
.++...++-++.....|++||-++.+|+-|..- -+|+|
T Consensus 109 ~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg 150 (288)
T cd05583 109 VYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFG 150 (288)
T ss_pred HHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECc
Confidence 344566777778889999999999999988532 25766
No 41
>PF12860 PAS_7: PAS fold
Probab=26.42 E-value=46 Score=29.25 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=42.8
Q ss_pred CCeEEeecHHHHHhCCCCCCCCCC-CCc---chhccCCcCCCCCCcch---hhcc-ccC--CCcCCCCCCCcceeeecee
Q 006475 144 NPQLVAWSESVADSLELDPKEFER-PDF---PLFFSGATPLAGAVPYA---QCYG-GHQ--FGMWAGQLGDGRAITLGEI 213 (643)
Q Consensus 144 ~P~lv~~s~~la~~LgLd~~~~~~-~~~---~~~~sGn~~~~g~~P~A---~~Ya-GHQ--FG~fagQLGDGRAilLGEv 213 (643)
+=+|+.+|+..+++++++++.+.. ..+ ++...-...+....+.+ +... .++ --.+-=.+.|||-+.+-..
T Consensus 14 ~~rl~~~N~~~~~l~~~~~~~~~~G~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgr~l~~~~~ 93 (115)
T PF12860_consen 14 DGRLVFWNQRFRELFGLPPEMLRPGASFRDLLRRLAERGEFPPGDPEAWVRQRLARLRRRQPRSFELRLPDGRWLEVRAQ 93 (115)
T ss_pred CCeEEeEcHHHHHHhCCCHHHhcCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCceeEEECCCCEEEEEEeE
Confidence 447999999999999999876632 233 33332222222222222 2221 122 2222225788888887776
Q ss_pred ecCCCce
Q 006475 214 LNLKSER 220 (643)
Q Consensus 214 ~~~~G~r 220 (643)
.-++|..
T Consensus 94 ~~~~Gg~ 100 (115)
T PF12860_consen 94 PLPDGGF 100 (115)
T ss_pred ECCCCCE
Confidence 6666643
No 42
>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4
Probab=25.80 E-value=1.1e+02 Score=29.73 Aligned_cols=45 Identities=16% Similarity=0.017 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCceeeeee----ecccccccc
Q 006475 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (643)
Q Consensus 368 ~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYGPfaFm 412 (643)
...++...++-++.+...|.+||=++++|+-+.... .|+|-...+
T Consensus 101 ~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~ 149 (264)
T cd06626 101 IRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKL 149 (264)
T ss_pred HHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccccccccc
Confidence 345666778888888999999999999998886432 577765554
No 43
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=25.13 E-value=37 Score=34.26 Aligned_cols=28 Identities=43% Similarity=0.749 Sum_probs=24.4
Q ss_pred CccccCCcccchhhhhHHHHHHHHhhhcCCCC
Q 006475 232 PYSRFADGLAVLRSSIREFLCSEAMHFLGIPT 263 (643)
Q Consensus 232 PySR~gDGRAVLRSsIREyL~SEAMhaLGIPT 263 (643)
||||- -+.||+-.||+..||+ .++||||
T Consensus 161 PFS~L---D~ALR~qfR~wVFs~~-r~agiPt 188 (213)
T COG4136 161 PFSRL---DVALRDQFRQWVFSEV-RAAGIPT 188 (213)
T ss_pred chhHH---HHHHHHHHHHHHHHHH-HhcCCCe
Confidence 88885 3679999999999997 5789999
No 44
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=24.32 E-value=61 Score=34.13 Aligned_cols=40 Identities=28% Similarity=0.233 Sum_probs=32.8
Q ss_pred hhhcCCCCcce--eEEEecCCeeeeccccCCCCCCCCceEEEeecCCc
Q 006475 256 MHFLGIPTTRA--LCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSF 301 (643)
Q Consensus 256 MhaLGIPTTRA--Lslv~s~~~V~Re~~y~g~~~~EpgAVv~RvApSh 301 (643)
|=-+|||++|. +.+|.....++|-. ..+|..++.++...-
T Consensus 103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~------n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 103 SIDLGIPNGRDSSLGCVGAQDGRIRAC------NIKPNKVLGYVGQHN 144 (238)
T ss_pred cceeccccccccceeEEeccCCceeee------ccccCceeeeecccc
Confidence 44689999999 88888888888874 579999999987654
No 45
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=23.82 E-value=80 Score=31.61 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccCCCceeeee----eeccccc
Q 006475 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPF 409 (643)
Q Consensus 369 ~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~Gl----TIDYGPf 409 (643)
..++...+..++.....|++||-++.+|+-|--. =+|||-.
T Consensus 119 ~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~ 163 (286)
T cd06614 119 AYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFA 163 (286)
T ss_pred HHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchh
Confidence 3456667778888888999999999999887532 1466543
No 46
>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc
Probab=23.76 E-value=1.1e+02 Score=29.65 Aligned_cols=41 Identities=12% Similarity=0.014 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhhccccccCCCceeeeee----eccccccc
Q 006475 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGF 411 (643)
Q Consensus 371 Vv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYGPfaF 411 (643)
++...++-++.-...|++||-++.+|+-|.... .|+|-+-.
T Consensus 106 i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~ 150 (256)
T cd08529 106 FFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKL 150 (256)
T ss_pred HHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEccccccee
Confidence 344455555666678999999999999886522 46664443
No 47
>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U
Probab=23.68 E-value=1.1e+02 Score=32.00 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccCCCceeee----eeecccccccccC
Q 006475 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPFGFLDA 414 (643)
Q Consensus 369 ~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~G----lTIDYGPfaFmD~ 414 (643)
..++...++-++.+-..|++||-++.+|+-|.. .-+|||-...++.
T Consensus 111 ~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~ 160 (328)
T cd07856 111 QYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQDP 160 (328)
T ss_pred HHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCccccccccCC
Confidence 345566677778888999999999999997753 2378887766654
No 48
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=23.63 E-value=72 Score=31.78 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCceeeee----eecccccccc
Q 006475 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFL 412 (643)
Q Consensus 368 ~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~Gl----TIDYGPfaFm 412 (643)
...++...++-++.....|++||-++.+|+-|.-. -+|||-...+
T Consensus 123 ~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~dfg~~~~~ 171 (282)
T cd06636 123 IAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQL 171 (282)
T ss_pred HHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCcchhhh
Confidence 44455566777777888999999999999988632 2677755444
No 49
>smart00219 TyrKc Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily.
Probab=23.27 E-value=89 Score=30.19 Aligned_cols=42 Identities=21% Similarity=0.108 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhhccccccCCCceeeeee----ecccccccc
Q 006475 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (643)
Q Consensus 371 Vv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYGPfaFm 412 (643)
++...+.-++.-...|++||-++.+|+-+.... +|+|=+.+.
T Consensus 108 ~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~ 153 (258)
T smart00219 108 FALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDL 153 (258)
T ss_pred HHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCceec
Confidence 334444455555677999999999999887665 566654443
No 50
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=23.01 E-value=1.7e+02 Score=28.68 Aligned_cols=67 Identities=27% Similarity=0.364 Sum_probs=41.9
Q ss_pred hhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhcCCCcccchhhHHHHHHHHHc
Q 006475 529 ELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAEL 597 (643)
Q Consensus 529 ~~~~~l~~~~~~~~~~~~~~~~~Wl~~y~~rl~~~~~~~~~r~~~M~~~NP~fIlRN~~~eeaI~~Ae~ 597 (643)
++.+.|+..+.++.++.++..-+-++.|-+--.+++.++++..+.+ -+|+-|-|+.+.+..++..++
T Consensus 5 efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~L--G~P~~iA~~i~~~~~i~~~~~ 71 (181)
T PF08006_consen 5 EFLNELEKYLKKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAEL--GSPKEIAREILAEYSIKEEEK 71 (181)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHc--CCHHHHHHHHHHhhhhhhhhc
Confidence 4556666667666555444444444444433334566776644332 489999999999988887753
No 51
>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=22.84 E-value=1.4e+02 Score=29.78 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhhccccccCCCceeeeee----ecccccccccC
Q 006475 372 AERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLDA 414 (643)
Q Consensus 372 v~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYGPfaFmD~ 414 (643)
+...++-++.-...|++||-++.+|+-|..-. +|||-..++..
T Consensus 114 ~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~ 160 (284)
T cd05081 114 ASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQ 160 (284)
T ss_pred HHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCcccccccC
Confidence 33445555566678999999999999886433 58887666543
No 52
>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase. Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and
Probab=22.83 E-value=1.7e+02 Score=28.45 Aligned_cols=43 Identities=21% Similarity=0.181 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhhhccccccCCCceeeeee----eccccccccc
Q 006475 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLD 413 (643)
Q Consensus 371 Vv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYGPfaFmD 413 (643)
++...+.-++.....|++||-++.+|+-|.... +|||-.-.+.
T Consensus 102 ~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~ 148 (257)
T cd05040 102 YAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALP 148 (257)
T ss_pred HHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEecccccccccc
Confidence 344455566666778999999999998885432 4666554443
No 53
>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int
Probab=22.46 E-value=71 Score=31.90 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhhhccccccCCCceeeeee----eccccccccc
Q 006475 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLD 413 (643)
Q Consensus 370 eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYGPfaFmD 413 (643)
.++...+..++.....|++||=++++|+-|.... +|||-...+.
T Consensus 105 ~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~ 152 (277)
T cd06641 105 TILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT 152 (277)
T ss_pred HHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccceecc
Confidence 3444555566666789999999999999886554 6777544443
No 54
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=22.06 E-value=1.3e+02 Score=35.18 Aligned_cols=68 Identities=16% Similarity=0.279 Sum_probs=50.0
Q ss_pred ccCCCcCCCCCCCcceeeeceeecC--CCceeEeeeecCCCCCccccCCcccchhhhhHHHHHHHHhhhcCCCCcceeEE
Q 006475 192 GHQFGMWAGQLGDGRAITLGEILNL--KSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCL 269 (643)
Q Consensus 192 GHQFG~fagQLGDGRAilLGEv~~~--~G~r~ElQLKGAG~TPySR~gDGRAVLRSsIREyL~SEAMhaLGIPTTRALsl 269 (643)
|..||.+.|.=.|+.+|++|-..|. +|.++ ||.+-+=..| -+-++|+..||.+.|.+.|
T Consensus 238 gNv~~~~~g~~~~~p~v~~gSHlDTV~~gG~~----------------DG~~Gv~a~l---~~~~~l~~~~~~~~~~i~v 298 (591)
T PRK13799 238 GNVVGRYKAADDDAKTLITGSHYDTVRNGGKY----------------DGREGIFLAI---ACVKELHEQGERLPFHFEV 298 (591)
T ss_pred CCEEEEcCCCCCCCCeEEEeccccccCCCCcc----------------ccHHHHHHHH---HHHHHHHHcCCCCCCCeEE
Confidence 6778988876678899999987764 45444 8885544444 4557788889999999999
Q ss_pred Ee-cCCeeee
Q 006475 270 VT-TGKFVTR 278 (643)
Q Consensus 270 v~-s~~~V~R 278 (643)
|. ++|.-.|
T Consensus 299 i~~~~EEg~r 308 (591)
T PRK13799 299 IAFAEEEGQR 308 (591)
T ss_pred EEecCCCccC
Confidence 85 4665443
No 55
>KOG2420 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=21.94 E-value=90 Score=34.72 Aligned_cols=60 Identities=25% Similarity=0.408 Sum_probs=43.3
Q ss_pred HHhCCCCCCCCCCCC------cchhccCCcCCCCCCcchhhccccCCCcCCCCC--CCcceeeeceeecCCCceeEeeee
Q 006475 155 ADSLELDPKEFERPD------FPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQL--GDGRAITLGEILNLKSERWELQLK 226 (643)
Q Consensus 155 a~~LgLd~~~~~~~~------~~~~~sGn~~~~g~~P~A~~YaGHQFG~fagQL--GDGRAilLGEv~~~~G~r~ElQLK 226 (643)
+...|...+|...+| +.++|. .++=||+.|+.+ =+++. -||+.+..|+|.|. ..| |+|
T Consensus 115 s~~Fg~NL~Ea~~pDl~hY~nlaeFF~-RkLKpg~RpIdp---------~~piVSPaDGkIL~fG~v~~~---~IE-qVK 180 (382)
T KOG2420|consen 115 ARTFGCNLDEAADPDLTHYRNLAEFFT-RKLKPGTRPIDP---------ASPLVSPADGKILHFGVVEDN---EIE-QVK 180 (382)
T ss_pred hHhhccCchhccCchhhhhhhHHHHHh-hccCCCCcccCC---------CCceecCCCCcEEEEEEecCc---eee-Eec
Confidence 577888877777775 566775 456689999986 23333 49999999999764 344 899
Q ss_pred cC
Q 006475 227 GA 228 (643)
Q Consensus 227 GA 228 (643)
|-
T Consensus 181 G~ 182 (382)
T KOG2420|consen 181 GH 182 (382)
T ss_pred Ce
Confidence 83
No 56
>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent
Probab=21.94 E-value=1.2e+02 Score=30.17 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhhhccccccCCCceeeee----eecccccccccC
Q 006475 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLDA 414 (643)
Q Consensus 370 eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~Gl----TIDYGPfaFmD~ 414 (643)
.++...++-++.....|++||-++.+|+-|... -+|||-..++..
T Consensus 105 ~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~ 153 (277)
T cd06917 105 VIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQ 153 (277)
T ss_pred HHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceeecCC
Confidence 345556666666778999999999999988743 368886665543
No 57
>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut
Probab=21.40 E-value=1.6e+02 Score=29.01 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhhhccccccCCCceeeeee----eccccccccc
Q 006475 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLD 413 (643)
Q Consensus 371 Vv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYGPfaFmD 413 (643)
++...+.-++.....|++||-++.+|+-|..-. .|||-...+.
T Consensus 114 ~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~ 160 (284)
T cd05038 114 FSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLP 160 (284)
T ss_pred HHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccccccccc
Confidence 455566677777899999999999999886532 5777665554
No 58
>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both
Probab=21.36 E-value=1.2e+02 Score=30.07 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCceeeeee----eccccc
Q 006475 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPF 409 (643)
Q Consensus 368 ~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYGPf 409 (643)
...++...++-++.....|++||-++.+|+-|.... .|||-.
T Consensus 109 ~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~~ 154 (287)
T cd07838 109 IKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLA 154 (287)
T ss_pred HHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCcc
Confidence 455666777788888899999999999999887533 566543
No 59
>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h
Probab=21.10 E-value=1.3e+02 Score=29.49 Aligned_cols=45 Identities=13% Similarity=0.201 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCceeeeee----ecccccccc
Q 006475 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (643)
Q Consensus 368 ~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYGPfaFm 412 (643)
...++...++-++.....|++|+-++++|+-|..-. .|||-..++
T Consensus 102 ~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~ 150 (256)
T cd05114 102 LLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYV 150 (256)
T ss_pred HHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCcccc
Confidence 344555566666677789999999999999886533 588755543
No 60
>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase. Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1
Probab=21.03 E-value=97 Score=30.19 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCceeeee----eeccccccccc
Q 006475 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLD 413 (643)
Q Consensus 368 ~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~Gl----TIDYGPfaFmD 413 (643)
...++...+..++.+...|++||-++.+|+.|.-- =+|||-+.++.
T Consensus 104 ~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~ 153 (267)
T cd06610 104 IATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLA 153 (267)
T ss_pred HHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHHhc
Confidence 34456667788888999999999999999888632 14776555543
No 61
>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio
Probab=20.96 E-value=1.1e+02 Score=30.35 Aligned_cols=46 Identities=17% Similarity=0.139 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCceeeeee----eccccccccc
Q 006475 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLD 413 (643)
Q Consensus 368 ~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYGPfaFmD 413 (643)
...++...++-++.....|++||-++.+|+-|.... +|||-...++
T Consensus 102 ~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~ 151 (286)
T cd07847 102 IKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILT 151 (286)
T ss_pred HHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECccccceecC
Confidence 344566677777888889999999999999886432 5666554443
No 62
>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki
Probab=20.93 E-value=1.3e+02 Score=29.35 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhhccccccCCCceeeeee
Q 006475 372 AERTASLVAQWQGVGFTHGVLNTDNMSILGLT 403 (643)
Q Consensus 372 v~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT 403 (643)
+...+.-++.-..-|++|+-++.+|+-|....
T Consensus 107 ~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~ 138 (259)
T cd05037 107 AKQLASALHYLEDKKLVHGNVCGKNILVARYG 138 (259)
T ss_pred HHHHHHHHHHHhhCCeecccCccceEEEecCc
Confidence 33444445555678999999999999886543
No 63
>TIGR02579 cas_csx3 CRISPR-associated protein, Csx3 family. Members of this family are found encoded in CRISPR-associated (cas) gene clusters, near CRISPR repeats, in the genomes of several different thermophiles: Archaeoglobus fulgidus (archaeal), Aquifex aeolicus (Aquificae), Dictyoglomus thermophilum (Dictyoglomi), and a thermophilic Synechococcus (Cyanobacteria). It is not yet assigned to a specific CRISPR/cas subtype (hence the x designation csx3).
Probab=20.87 E-value=36 Score=30.49 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=33.2
Q ss_pred ecHHHHHhCCCCCCCCCCCCcchhccCCcCCCCCCcchhhccccCC-CcCCCCCC
Q 006475 150 WSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQF-GMWAGQLG 203 (643)
Q Consensus 150 ~s~~la~~LgLd~~~~~~~~~~~~~sGn~~~~g~~P~A~~YaGHQF-G~fagQLG 203 (643)
++++-.+.|.+... ++ ...--+++|..+.-=..-+|+.|++|.| +.|.||||
T Consensus 12 l~p~dl~~~~lP~~-id-~~~gvvIsGrgP~WLy~~Lah~~h~~p~iav~dPrlG 64 (83)
T TIGR02579 12 LVPEDLKQLQPPAG-VN-TRKGVVLSGRGPIWLYGFLVHFYHPTPFVAVYDPRLG 64 (83)
T ss_pred CCHHHHhcccCCcc-cC-CCccEEEeccCcHHHHHHHHHHhCCCceEEEEcCccc
Confidence 55666666655421 22 2223456666543323457999999999 99999998
No 64
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=20.77 E-value=98 Score=30.84 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccCCCceeeeee----ecccc
Q 006475 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGP 408 (643)
Q Consensus 369 ~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYGP 408 (643)
..++...++-++....-|++||-++.+|+.|.... +|||=
T Consensus 127 ~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~ 170 (286)
T cd06638 127 AYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGV 170 (286)
T ss_pred HHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEEccCCc
Confidence 34555666777788889999999999999886432 56663
No 65
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=20.55 E-value=91 Score=31.32 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCceeeee----eeccccccc
Q 006475 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGF 411 (643)
Q Consensus 368 ~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~Gl----TIDYGPfaF 411 (643)
...++...+.-+..+...|++||=++.+|+-|.-- -+|||=...
T Consensus 130 ~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~dfg~~~~ 177 (291)
T cd06639 130 ISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQ 177 (291)
T ss_pred HHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEeecccchh
Confidence 44566667778888889999999999999887532 256664443
No 66
>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of
Probab=20.44 E-value=92 Score=30.29 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHH-hhhccccccCCCceeeeee----ecccccccc
Q 006475 369 VEVAERTASLVAQWQG-VGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (643)
Q Consensus 369 ~eVv~RtA~LVA~WQ~-vGF~HGVmNTDNmSI~GlT----IDYGPfaFm 412 (643)
..++...++.++.... .|++||-++.+|+-|-.-. +|+|-...+
T Consensus 102 ~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~ 150 (264)
T cd06623 102 AYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVL 150 (264)
T ss_pred HHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCccceec
Confidence 3456667778888888 9999999999999885432 566654443
No 67
>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases. Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core
Probab=20.40 E-value=90 Score=29.72 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCceeee
Q 006475 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG 401 (643)
Q Consensus 368 ~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~G 401 (643)
...++...++-++.....|++||=++.+|+-|..
T Consensus 100 ~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~ 133 (253)
T cd05122 100 IAYVCKELLKGLEYLHSNGIIHRDIKAANILLTS 133 (253)
T ss_pred HHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEcc
Confidence 3446666777788888899999999999988753
No 68
>PF10091 Glycoamylase: Putative glucoamylase; InterPro: IPR019282 This domain has no known function.; PDB: 3EU8_C.
Probab=20.36 E-value=37 Score=35.45 Aligned_cols=15 Identities=47% Similarity=1.145 Sum_probs=10.7
Q ss_pred ccccccccCCCCCCC
Q 006475 406 YGPFGFLDAFDPSFT 420 (643)
Q Consensus 406 YGPfaFmD~fdP~~v 420 (643)
+|+|||.|+||++..
T Consensus 181 ~g~YGF~dA~n~t~~ 195 (234)
T PF10091_consen 181 WGRYGFYDAFNPTPS 195 (234)
T ss_dssp EETTEE-S-BBTTT-
T ss_pred ccCCCCcceECCCcc
Confidence 579999999999863
No 69
>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi
Probab=20.33 E-value=1.1e+02 Score=30.14 Aligned_cols=47 Identities=15% Similarity=0.068 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCceeeeee----ecccccccccC
Q 006475 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLDA 414 (643)
Q Consensus 368 ~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYGPfaFmD~ 414 (643)
...++...++-++..-.-|++||-++.+|+-|.... +|+|-.-.+..
T Consensus 95 ~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~ 145 (262)
T cd05572 95 ARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKS 145 (262)
T ss_pred HHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCc
Confidence 344666677888888899999999999999875433 78877665543
No 70
>smart00090 RIO RIO-like kinase.
Probab=20.16 E-value=1e+02 Score=31.49 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHhh-hccccccCCCceee
Q 006475 369 VEVAERTASLVAQWQGVG-FTHGVLNTDNMSIL 400 (643)
Q Consensus 369 ~eVv~RtA~LVA~WQ~vG-F~HGVmNTDNmSI~ 400 (643)
..++...+..++..-..| ++||=++.+|+-|.
T Consensus 151 ~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~ 183 (237)
T smart00090 151 FELYDDILEEMRKLYKEGELVHGDLSEYNILVH 183 (237)
T ss_pred HHHHHHHHHHHHHHHhcCCEEeCCCChhhEEEE
Confidence 445566778888888999 99999999999885
No 71
>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells
Probab=20.11 E-value=1.2e+02 Score=30.06 Aligned_cols=40 Identities=23% Similarity=0.151 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCceeeeee----eccc
Q 006475 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYG 407 (643)
Q Consensus 368 ~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlT----IDYG 407 (643)
...++...|+-++....-|++|+=++.+|+-|.... .|||
T Consensus 102 ~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg 145 (269)
T cd05087 102 LQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYG 145 (269)
T ss_pred HHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCcc
Confidence 344556677777888899999999999999886532 5666
Done!