Query 006475
Match_columns 643
No_of_seqs 158 out of 951
Neff 4.5
Searched_HMMs 29240
Date Tue Mar 26 02:03:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3feg_A Choline/ethanolamine ki 32.5 1.8E+02 0.006 30.5 9.8 32 244-277 98-129 (379)
2 3akj_A CTKA; protein kinase, t 28.1 66 0.0023 33.2 5.5 47 217-268 30-76 (325)
3 3q4f_C DNA repair protein XRCC 24.4 77 0.0026 30.9 4.7 32 299-332 132-163 (186)
4 3tpd_A Serine/threonine-protei 23.7 5.1E+02 0.018 27.3 11.6 89 387-485 301-410 (440)
5 3dxp_A Putative acyl-COA dehyd 23.6 2.8E+02 0.0097 27.5 9.1 29 245-273 82-110 (359)
6 3tm0_A Aminoglycoside 3'-phosp 20.6 78 0.0027 29.9 4.0 25 246-271 56-80 (263)
7 2clq_A Mitogen-activated prote 19.2 1.1E+02 0.0037 29.1 4.7 46 371-416 127-177 (295)
8 3cek_A Dual specificity protei 17.9 2.9E+02 0.01 26.5 7.6 46 371-416 132-177 (313)
9 3is5_A Calcium-dependent prote 17.6 96 0.0033 29.7 3.9 44 369-412 127-177 (285)
10 1xbb_A Tyrosine-protein kinase 17.0 1.1E+02 0.0037 29.2 4.2 42 370-411 121-166 (291)
No 1
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=32.49 E-value=1.8e+02 Score=30.49 Aligned_cols=32 Identities=9% Similarity=0.020 Sum_probs=24.2
Q ss_pred hhhhHHHHHHHHhhhcCCCCcceeEEEecCCeee
Q 006475 244 RSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVT 277 (643)
Q Consensus 244 RSsIREyL~SEAMhaLGIPTTRALslv~s~~~V~ 277 (643)
-..+||+-+-.+++..||+ .|.++....| .|+
T Consensus 98 ~~~~rE~~vl~~L~~~gv~-P~ll~~~~~g-~v~ 129 (379)
T 3feg_A 98 DSLVLESVMFAILAERSLG-PQLYGVFPEG-RLE 129 (379)
T ss_dssp HHHHHHHHHHHHHHHTTSS-CCEEEEETTE-EEE
T ss_pred HHHHHHHHHHHHHHhcCCC-CeEEEEcCCc-cEE
Confidence 4557999999999999995 7887765433 444
No 2
>3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB: 3akk_A* 3akl_A*
Probab=28.10 E-value=66 Score=33.24 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=27.9
Q ss_pred CCceeEeeeecCCCCCccccCCcccchhhhhHHHHHHHHhhhcCCCCcceeE
Q 006475 217 KSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALC 268 (643)
Q Consensus 217 ~G~r~ElQLKGAG~TPySR~gDGRAVLRSsIREyL~SEAMhaLGIPTTRALs 268 (643)
+|.+|= +||.+.|. ...+++ --.+.+-||+|++...++|||+...--
T Consensus 30 ~g~~~i--~K~~~~~~--~~~~~~-~~~~~~nE~~~~~LA~~~Gl~va~~~l 76 (325)
T 3akj_A 30 NNELYM--VKFPPKPS--THKEMS-YTNGCFSEYVACHIVNSLGLKVQETLL 76 (325)
T ss_dssp TTEEEE--EECCC-------------CCHHHHHHHHHHHHHHTTCCBCCEEE
T ss_pred CCeEEE--EECCCCCC--Cccccc-ccccHHHHHHHHHHHHHhCCCcCceEE
Confidence 355554 49988764 111100 113569999999999999999875533
No 3
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=24.41 E-value=77 Score=30.89 Aligned_cols=32 Identities=19% Similarity=0.453 Sum_probs=26.3
Q ss_pred CCceeecchhhhhccCCCCHHHHHHHHHHHHHhh
Q 006475 299 QSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHH 332 (643)
Q Consensus 299 pShIRfGsFE~fa~r~~~d~~~l~~LaDy~I~~h 332 (643)
...+|+|+|.+-... .-.+.+|+|++|++.+.
T Consensus 132 dvsF~LGSv~L~~V~--nPaE~irELi~~~L~~i 163 (186)
T 3q4f_C 132 DVSFRLGSFNLEKVE--NPAEVIRELICYCLDTI 163 (186)
T ss_dssp SCEEEEEEEECEECS--CHHHHHHHHHHHHHHHH
T ss_pred CcEEEEeeEEeeeCC--ChHHHHHHHHHHHHHHH
Confidence 457899999998777 34677999999999974
No 4
>3tpd_A Serine/threonine-protein kinase HIPA; persistence, multidrug tolerance, HIPB, transferase; 1.50A {Escherichia coli} PDB: 3tpe_A* 3tpv_B* 3tpt_A* 3hzi_A* 2wiu_A 3tpb_A 3dnu_A 3dnt_A 3dnv_A* 3fbr_A*
Probab=23.66 E-value=5.1e+02 Score=27.35 Aligned_cols=89 Identities=12% Similarity=0.143 Sum_probs=55.9
Q ss_pred hccccccCC----CceeeeeeecccccccccCCCCCCCCCCCCCC-----------------CCccccCChhHHHHHHHH
Q 006475 387 FTHGVLNTD----NMSILGLTIDYGPFGFLDAFDPSFTPNTTDLP-----------------GRRYCFANQPDIGLWNIA 445 (643)
Q Consensus 387 F~HGVmNTD----NmSI~GlTIDYGPfaFmD~fdP~~v~N~sD~~-----------------G~RYaf~nQP~I~~WNL~ 445 (643)
|.-=+=||| |.|++= -+=|.+..=-.||--.+....... |+.|.+. +|..-.+.
T Consensus 301 fn~ligN~D~H~KN~s~l~--~~~g~~~LaPaYDl~~~~~~~~~~~~~~~~~~lAm~~~g~~~~~~~~~---~i~~~~~~ 375 (440)
T 3tpd_A 301 FQWLIGATDGHAKNFSVFI--QAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKGKKTAID---KIYPRHFL 375 (440)
T ss_dssp HHHHTTCCCCCGGGCEEEE--CGGGCEEECCCCCCCCSGGGTTSSSCCGGGCEEEEEEEETTEEEEEGG---GCCHHHHH
T ss_pred hhHhhcCCcCCccceEEEE--cCCCceEECchhhcccccccCCcccCCCcchhhcccccCccCccCchh---hccHHHHH
Confidence 333455888 899862 144667778888875554332211 2223332 35667788
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006475 446 QFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKL 485 (643)
Q Consensus 446 rLaeaL~p~~li~~~~a~~~L~~y~~~f~~~y~~~m~~KL 485 (643)
.+|+.+. ++...+++++++......+.... ..+.|
T Consensus 376 ~~a~~~g----l~~~~~~~ii~~~~~~~~~~~~~-~~~~l 410 (440)
T 3tpd_A 376 ATAKVLR----FPEVQMHEILSDFARMIPAALDN-VKTSL 410 (440)
T ss_dssp HHHHHHT----CCHHHHHHHHHHHHHHHHHHHHH-HHTTS
T ss_pred HHHHHcC----CCHHHHHHHHHHHHHHHHHHHHH-HHHhC
Confidence 9999886 68888999999888877755443 34444
No 5
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=23.61 E-value=2.8e+02 Score=27.50 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHhhhcCCCCcceeEEEecC
Q 006475 245 SSIREFLCSEAMHFLGIPTTRALCLVTTG 273 (643)
Q Consensus 245 SsIREyL~SEAMhaLGIPTTRALslv~s~ 273 (643)
..-||+-+-.+++..|||+.+.+.+...+
T Consensus 82 ~~~~E~~~l~~L~~~~vpvP~~~~~~~~~ 110 (359)
T 3dxp_A 82 AIEREYRVMDALAGTDVPVAKMYALCEDE 110 (359)
T ss_dssp CHHHHHHHHHHHTTSSSCCCCEEEEECCT
T ss_pred HHHHHHHHHHHhhcCCCCCCcEEEECCCC
Confidence 56689999999999999999999887554
No 6
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=20.64 E-value=78 Score=29.88 Aligned_cols=25 Identities=16% Similarity=0.021 Sum_probs=19.3
Q ss_pred hhHHHHHHHHhhhcCCCCcceeEEEe
Q 006475 246 SIREFLCSEAMHFLGIPTTRALCLVT 271 (643)
Q Consensus 246 sIREyL~SEAMhaLGIPTTRALslv~ 271 (643)
.-||+-+-+.++. +||..|-+....
T Consensus 56 ~~~E~~~l~~l~~-~~~vP~v~~~~~ 80 (263)
T 3tm0_A 56 VEREKDMMLWLEG-KLPVPKVLHFER 80 (263)
T ss_dssp HHHHHHHHHHHTT-TSCCCCEEEEEE
T ss_pred HHHHHHHHHHHhc-CCCCCeEEEEEe
Confidence 5678877777877 899888877654
No 7
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=19.17 E-value=1.1e+02 Score=29.07 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhhccccccCCCceeee-----eeecccccccccCCC
Q 006475 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILG-----LTIDYGPFGFLDAFD 416 (643)
Q Consensus 371 Vv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~G-----lTIDYGPfaFmD~fd 416 (643)
++...+.-++.-...|++||-++.+|+.|.. --+|||-.-.+...+
T Consensus 127 ~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~ 177 (295)
T 2clq_A 127 YTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGIN 177 (295)
T ss_dssp HHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC--
T ss_pred HHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeecccccccCCCC
Confidence 4445556666667789999999999999963 235777665555443
No 8
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=17.89 E-value=2.9e+02 Score=26.50 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhhhccccccCCCceeeeeeecccccccccCCC
Q 006475 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFD 416 (643)
Q Consensus 371 Vv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlTIDYGPfaFmD~fd 416 (643)
++...++-++.-...|++||-++.+|+.|..-++=.+=||+...++
T Consensus 132 i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~kL~Dfg~~~~~~ 177 (313)
T 3cek_A 132 YWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQ 177 (313)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTEEEECCCSSSCC--
T ss_pred HHHHHHHHHHHHHHCCceecCCCcccEEEECCeEEEeecccccccc
Confidence 4445566667777889999999999999865544444444444333
No 9
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=17.62 E-value=96 Score=29.71 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccCCCceeee-------eeecccccccc
Q 006475 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILG-------LTIDYGPFGFL 412 (643)
Q Consensus 369 ~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~G-------lTIDYGPfaFm 412 (643)
..++...+.-++.-..-|++||-++.+|+.|.. --+|||-..++
T Consensus 127 ~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~ 177 (285)
T 3is5_A 127 AELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELF 177 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-
T ss_pred HHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceec
Confidence 344444555566666789999999999999843 23566655443
No 10
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=17.01 E-value=1.1e+02 Score=29.25 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhhhccccccCCCceeeee----eeccccccc
Q 006475 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGF 411 (643)
Q Consensus 370 eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~Gl----TIDYGPfaF 411 (643)
.++...++-++.-...|++||-++.+|+-|..- -+|||=...
T Consensus 121 ~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~ 166 (291)
T 1xbb_A 121 ELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKA 166 (291)
T ss_dssp HHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred HHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCccee
Confidence 344445556666677899999999999998542 246654433
Done!