Query 006475
Match_columns 643
No_of_seqs 158 out of 951
Neff 4.5
Searched_HMMs 13730
Date Tue Mar 26 02:04:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006475.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006475hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zyla1 d.144.1.6 (A:4-328) Rd 70.5 2.2 0.00016 40.8 5.4 24 384-413 191-214 (325)
2 d2ppqa1 d.144.1.6 (A:5-320) Ho 21.6 9.1 0.00067 35.5 -0.0 50 364-417 162-211 (316)
3 d1zavu1 a.108.1.1 (U:1-30) Rib 21.1 28 0.0021 22.6 2.3 27 588-614 3-29 (30)
4 d2f1ka1 a.100.1.12 (A:166-279) 17.9 1.4E+02 0.01 24.1 6.9 43 539-609 62-104 (114)
5 d1k2pa_ d.144.1.7 (A:) Bruton' 16.6 1E+02 0.0073 27.7 6.2 49 370-418 104-156 (258)
6 d2axtf1 f.23.38.1 (F:11-45) Cy 14.0 7.9 0.00057 26.3 -1.8 10 255-264 12-21 (35)
7 d2e2aa_ a.7.2.1 (A:) Enzyme II 13.6 65 0.0048 26.4 3.5 24 588-611 24-47 (104)
8 d1ll8a_ d.110.3.5 (A:) N-termi 12.7 49 0.0036 25.5 2.4 32 145-176 19-50 (114)
9 d1fmka3 d.144.1.7 (A:249-533) 11.1 84 0.0061 28.8 3.9 32 369-400 116-147 (285)
10 d1c8ua2 d.38.1.3 (A:116-286) T 10.9 42 0.0031 28.5 1.5 26 195-220 132-157 (171)
No 1
>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}
Probab=70.47 E-value=2.2 Score=40.80 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=18.4
Q ss_pred HhhhccccccCCCceeeeeeeccccccccc
Q 006475 384 GVGFTHGVLNTDNMSILGLTIDYGPFGFLD 413 (643)
Q Consensus 384 ~vGF~HGVmNTDNmSI~GlTIDYGPfaFmD 413 (643)
..|.|||=++-+|+-+-| |+. |+|
T Consensus 191 p~~liHgDlh~~NvL~~~-----~~~-~ID 214 (325)
T d1zyla1 191 TVLRLHGDCHAGNILWRD-----GPM-FVD 214 (325)
T ss_dssp CCEECCSSCSGGGEEESS-----SEE-ECC
T ss_pred CceeecCCCCcccEEEeC-----Cce-EEe
Confidence 479999999999987644 553 665
No 2
>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}
Probab=21.60 E-value=9.1 Score=35.47 Aligned_cols=50 Identities=20% Similarity=0.144 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCceeeeeeecccccccccCCCC
Q 006475 364 YAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDP 417 (643)
Q Consensus 364 y~~l~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlTIDYGPfaFmD~fdP 417 (643)
....+.+..+........=...|+|||=+|.||+-+-|-.+ .|++|-+|-
T Consensus 162 ~~~~l~~~~~~~~~~~~~~L~~giIHgDl~~dNvl~~~~~v----~gvIDF~~~ 211 (316)
T d2ppqa1 162 LREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDEL----SGLIDFYFA 211 (316)
T ss_dssp HHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEE----EEECCCTTC
T ss_pred HHHHHHHHHHhhhccCccccccccccCCcchhhhhcccccc----eeEeccccc
Confidence 33444444444333333335689999999999999877654 567766554
No 3
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=21.09 E-value=28 Score=22.60 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhCCC
Q 006475 588 CQSAIDAAELGDFGEVRRLLKLMERPY 614 (643)
Q Consensus 588 ~eeaI~~Ae~GD~s~~~~L~~~l~~Py 614 (643)
+++.|++.|+=.-+++.+|.++|..-|
T Consensus 3 ~eeiv~aiekltvaelaelvk~ledkf 29 (30)
T d1zavu1 3 IDEIIEAIEKLTVSELAELVKKLEDKF 29 (30)
T ss_dssp HHHHHHHHHHSBHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 678889999999999999999987644
No 4
>d2f1ka1 a.100.1.12 (A:166-279) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=17.86 E-value=1.4e+02 Score=24.10 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=27.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhcCCCcccchhhHHHHHHHHHcCCHHHHHHHHHH
Q 006475 539 LDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKL 609 (643)
Q Consensus 539 ~~~~~~~~~~~~~Wl~~y~~rl~~~~~~~~~r~~~M~~~NP~fIlRN~~~eeaI~~Ae~GD~s~~~~L~~~ 609 (643)
.++...+++.+.++++.|.+.|. +..+.++.||...+.++++-
T Consensus 62 ~dI~~~N~~~i~~~l~~~~~~L~----------------------------~l~~~l~~~d~~~l~~~l~~ 104 (114)
T d2f1ka1 62 TMMATYNQRALLKSLQDYRQHLD----------------------------QLITLISNQQWPELHRLLQQ 104 (114)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHH----------------------------HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHcCCHHHHHHHHHH
Confidence 44455567778888888887553 34455566777776666653
No 5
>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.60 E-value=1e+02 Score=27.68 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhhccccccCCCceeeee----eecccccccccCCCCC
Q 006475 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLDAFDPS 418 (643)
Q Consensus 370 eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~Gl----TIDYGPfaFmD~fdP~ 418 (643)
.++...|+-++.....|++||=++.+|+.|..- -.|||-.-++...+..
T Consensus 104 ~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~ 156 (258)
T d1k2pa_ 104 EMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYT 156 (258)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCC
T ss_pred HHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhheeccCCCce
Confidence 455566777777788999999999999988763 2588877666554433
No 6
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.03 E-value=7.9 Score=26.31 Aligned_cols=10 Identities=50% Similarity=0.830 Sum_probs=7.9
Q ss_pred HhhhcCCCCc
Q 006475 255 AMHFLGIPTT 264 (643)
Q Consensus 255 AMhaLGIPTT 264 (643)
|.|+|||||-
T Consensus 12 avh~l~vptv 21 (35)
T d2axtf1 12 AVHTLAVPTI 21 (35)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhcccchh
Confidence 6788888874
No 7
>d2e2aa_ a.7.2.1 (A:) Enzyme IIa from lactose specific PTS, IIa-lac {Lactococcus lactis [TaxId: 1358]}
Probab=13.64 E-value=65 Score=26.37 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=20.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Q 006475 588 CQSAIDAAELGDFGEVRRLLKLME 611 (643)
Q Consensus 588 ~eeaI~~Ae~GD~s~~~~L~~~l~ 611 (643)
+-+||++|.+|||...+++++--.
T Consensus 24 ~~eAl~~ak~gdfe~A~~~l~eA~ 47 (104)
T d2e2aa_ 24 LLEALKAAENGDFAKADSLVVEAG 47 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456999999999999999887543
No 8
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.69 E-value=49 Score=25.48 Aligned_cols=32 Identities=9% Similarity=0.246 Sum_probs=26.5
Q ss_pred CeEEeecHHHHHhCCCCCCCCCCCCcchhccC
Q 006475 145 PQLVAWSESVADSLELDPKEFERPDFPLFFSG 176 (643)
Q Consensus 145 P~lv~~s~~la~~LgLd~~~~~~~~~~~~~sG 176 (643)
=+++.+|+.++++||.+.+++....+.+++..
T Consensus 19 G~I~~~N~a~~~l~Gy~~~el~g~~~~~l~~~ 50 (114)
T d1ll8a_ 19 TEILVANDKACGLLGYSSQDLIGQKLTQFFLR 50 (114)
T ss_dssp CBEEEECTTHHHHHTCCTTTTTTSBGGGGSSC
T ss_pred CEEEEECHHHHHhhcCCHHHHcCCCeeeecCc
Confidence 36999999999999999998877777666653
No 9
>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.07 E-value=84 Score=28.80 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccCCCceee
Q 006475 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSIL 400 (643)
Q Consensus 369 ~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~ 400 (643)
..++...|.-++.....|++||-++.+|+.|-
T Consensus 116 ~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~ 147 (285)
T d1fmka3 116 VDMAAQIASGMAYVERMNYVHRDLRAANILVG 147 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC
T ss_pred HHHHHHHHHHHHHHhhhheecccccceEEEEC
Confidence 44556667777777788999999999999874
No 10
>d1c8ua2 d.38.1.3 (A:116-286) Thioesterase II (TesB) {Escherichia coli [TaxId: 562]}
Probab=10.91 E-value=42 Score=28.53 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=21.9
Q ss_pred CCcCCCCCCCcceeeeceeecCCCce
Q 006475 195 FGMWAGQLGDGRAITLGEILNLKSER 220 (643)
Q Consensus 195 FG~fagQLGDGRAilLGEv~~~~G~r 220 (643)
|=+.++.-|+||++.-|++-+.+|++
T Consensus 132 ~~~~s~~a~~gRgl~~g~i~~~dG~L 157 (171)
T d1c8ua2 132 YSVESTSASSARGFVRGEFYTQDGVL 157 (171)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTCCE
T ss_pred EEEECccccCCeeEEEEEEECCCCCE
Confidence 44556778999999999999999975
Done!