Your job contains 1 sequence.
>006476
MHMYLCNSCTCGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLME
LYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDV
GFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSK
AEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISV
DVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRG
GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN
IVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALER
LAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEH
CVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQY
GKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRN
SLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006476
(643 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2078673 - symbol:AT3G02060 species:3702 "Arabi... 2684 2.8e-279 1
TIGR_CMR|CHY_0200 - symbol:CHY_0200 "transcription-repair... 1055 1.2e-106 1
TIGR_CMR|GSU_0017 - symbol:GSU_0017 "transcription-repair... 1030 5.3e-104 1
TIGR_CMR|ECH_0250 - symbol:ECH_0250 "transcription-repair... 1023 2.9e-103 1
TIGR_CMR|BA_0052 - symbol:BA_0052 "transcription-repair c... 1011 5.4e-102 1
TIGR_CMR|DET_1281 - symbol:DET_1281 "transcription-repair... 1001 6.2e-101 1
TIGR_CMR|SO_2255 - symbol:SO_2255 "transcription-repair c... 973 5.8e-98 1
TIGR_CMR|SPO_2074 - symbol:SPO_2074 "transcription-repair... 966 3.2e-97 1
TIGR_CMR|CBU_1148 - symbol:CBU_1148 "transcription-repair... 958 2.2e-96 1
UNIPROTKB|Q9KQW2 - symbol:VC1886 "Transcription-repair co... 953 7.6e-96 1
TIGR_CMR|VC_1886 - symbol:VC_1886 "transcription-repair c... 953 7.6e-96 1
UNIPROTKB|P30958 - symbol:mfd species:83333 "Escherichia ... 944 6.8e-95 1
TIGR_CMR|APH_0107 - symbol:APH_0107 "transcription-repair... 934 7.8e-94 1
UNIPROTKB|P64326 - symbol:mfd "Transcription-repair-coupl... 922 1.5e-92 1
TIGR_CMR|CJE_1228 - symbol:CJE_1228 "transcription-repair... 774 7.1e-77 1
TIGR_CMR|CHY_1468 - symbol:CHY_1468 "ATP-dependent DNA he... 634 4.8e-64 2
TIGR_CMR|CBU_0305 - symbol:CBU_0305 "ATP-dependent DNA he... 582 1.6e-56 1
TIGR_CMR|DET_1268 - symbol:DET_1268 "ATP-dependent DNA he... 450 2.4e-56 2
UNIPROTKB|Q0C0Q6 - symbol:HNE_1987 "Putative ATP-dependen... 573 1.4e-55 1
TIGR_CMR|BA_3993 - symbol:BA_3993 "ATP-dependent DNA heli... 570 2.9e-55 1
TIGR_CMR|NSE_0690 - symbol:NSE_0690 "ATP-dependent DNA he... 568 4.8e-55 1
TIGR_CMR|ECH_0062 - symbol:ECH_0062 "ATP-dependent DNA he... 553 1.9e-53 1
TIGR_CMR|GSU_1326 - symbol:GSU_1326 "ATP-dependent DNA he... 543 2.1e-52 1
UNIPROTKB|P24230 - symbol:recG "RecG DNA helicase" specie... 541 3.5e-52 1
TIGR_CMR|SPO_1681 - symbol:SPO_1681 "ATP-dependent DNA he... 541 3.5e-52 1
TIGR_CMR|APH_1298 - symbol:APH_1298 "ATP-dependent DNA he... 539 5.6e-52 1
TIGR_CMR|SO_4364 - symbol:SO_4364 "ATP-dependent DNA heli... 534 1.9e-51 1
UNIPROTKB|Q9KNM1 - symbol:VC_2711 "ATP-dependent DNA heli... 528 8.3e-51 1
TIGR_CMR|VC_2711 - symbol:VC_2711 "ATP-dependent DNA heli... 528 8.3e-51 1
TAIR|locus:2049541 - symbol:AT2G01440 species:3702 "Arabi... 313 9.8e-46 2
UNIPROTKB|P64322 - symbol:recG "ATP-dependent DNA helicas... 321 5.3e-40 2
TIGR_CMR|CJE_0514 - symbol:CJE_0514 "ATP-dependent DNA he... 399 5.8e-35 1
UNIPROTKB|P17888 - symbol:priA species:83333 "Escherichia... 148 1.5e-11 2
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel... 179 1.7e-10 1
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he... 179 1.7e-10 1
TIGR_CMR|BA_4006 - symbol:BA_4006 "primosomal protein N`"... 178 2.7e-09 3
FB|FBgn0036754 - symbol:CG5589 species:7227 "Drosophila m... 167 6.4e-09 1
UNIPROTKB|Q9KNQ3 - symbol:VC_2678 "Primosomal protein N`"... 143 1.6e-08 2
TIGR_CMR|VC_2678 - symbol:VC_2678 "primosomal protein N`"... 143 1.6e-08 2
TIGR_CMR|SPO_3127 - symbol:SPO_3127 "primosomal protein N... 135 2.9e-08 2
TIGR_CMR|SO_4122 - symbol:SO_4122 "primosomal protein N'"... 145 5.2e-08 2
DICTYBASE|DDB_G0274325 - symbol:ddx52 "DEAD/DEAH box heli... 159 5.7e-08 1
TIGR_CMR|VC_2564 - symbol:VC_2564 "ATP-dependent RNA heli... 156 6.5e-08 1
TIGR_CMR|CJE_0782 - symbol:CJE_0782 "primosomal protein N... 137 9.2e-08 2
TIGR_CMR|DET_0337 - symbol:DET_0337 "primosomal protein N... 156 1.2e-07 2
POMBASE|SPAC22F3.08c - symbol:rok1 "ATP-dependent RNA hel... 153 1.5e-07 1
UNIPROTKB|Q485I3 - symbol:dbpA "ATP-dependent RNA helicas... 152 1.9e-07 1
TIGR_CMR|CPS_1540 - symbol:CPS_1540 "ATP-dependent RNA he... 152 1.9e-07 1
TIGR_CMR|CPS_1590 - symbol:CPS_1590 "ATP-dependent RNA he... 151 2.3e-07 1
TIGR_CMR|GSU_0189 - symbol:GSU_0189 "ATP-dependent RNA he... 151 2.3e-07 1
GENEDB_PFALCIPARUM|PFE0215w - symbol:PFE0215w "ATP-depend... 152 3.9e-07 1
UNIPROTKB|Q8I457 - symbol:PFE0215w "ATP-dependent helicas... 152 3.9e-07 1
TIGR_CMR|CHY_1485 - symbol:CHY_1485 "primosomal protein N... 149 6.3e-07 2
UNIPROTKB|E1BUI4 - symbol:DDX51 "Uncharacterized protein"... 125 7.0e-07 2
TIGR_CMR|CBU_1815 - symbol:CBU_1815 "primosomal protein N... 143 1.1e-06 2
TIGR_CMR|GSU_0128 - symbol:GSU_0128 "primosomal protein n... 151 2.3e-06 2
UNIPROTKB|Q9KS53 - symbol:VC1407 "ATP-dependent RNA helic... 140 2.9e-06 1
TIGR_CMR|VC_1407 - symbol:VC_1407 "ATP-dependent RNA heli... 140 2.9e-06 1
UNIPROTKB|A8MTP9 - symbol:DDX52 "Probable ATP-dependent R... 140 4.2e-06 1
ZFIN|ZDB-GENE-060623-1 - symbol:ddx52 "DEAD (Asp-Glu-Ala-... 141 4.5e-06 1
UNIPROTKB|Q9Y2R4 - symbol:DDX52 "Probable ATP-dependent R... 140 5.6e-06 1
TIGR_CMR|APH_0356 - symbol:APH_0356 "primosomal protein N... 119 5.9e-06 2
MGI|MGI:1925644 - symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) bo... 139 7.2e-06 1
RGD|621743 - symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box pol... 139 7.2e-06 1
UNIPROTKB|Q8N8A6 - symbol:DDX51 "ATP-dependent RNA helica... 117 7.8e-06 2
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 137 8.1e-06 1
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 136 8.3e-06 1
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 136 8.3e-06 1
UNIPROTKB|I3LJA0 - symbol:DDX52 "Uncharacterized protein"... 137 9.3e-06 1
SGD|S000003139 - symbol:ROK1 "RNA-dependent ATPase" speci... 124 9.4e-06 2
TAIR|locus:2147987 - symbol:UAP56a "homolog of human UAP5... 135 1.2e-05 1
UNIPROTKB|A5D7C1 - symbol:DDX52 "Probable ATP-dependent R... 137 1.2e-05 1
UNIPROTKB|J9P4L6 - symbol:DDX52 "Uncharacterized protein"... 137 1.2e-05 1
UNIPROTKB|E2RB54 - symbol:DDX52 "Uncharacterized protein"... 137 1.2e-05 1
DICTYBASE|DDB_G0269932 - symbol:uap56 "ATP-dependent RNA ... 133 1.9e-05 1
UNIPROTKB|F1NQA6 - symbol:DDX52 "Uncharacterized protein"... 135 2.0e-05 1
UNIPROTKB|E1C4M1 - symbol:DDX52 "Uncharacterized protein"... 135 2.0e-05 1
UNIPROTKB|P0A9P6 - symbol:deaD "DeaD, DEAD-box RNA helica... 135 2.1e-05 1
RGD|1309580 - symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box po... 117 2.2e-05 2
MGI|MGI:1916913 - symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) bo... 117 2.3e-05 2
UNIPROTKB|F1MGC9 - symbol:DDX51 "Uncharacterized protein"... 115 3.1e-05 2
UNIPROTKB|Q81X23 - symbol:comFA "ComF operon protein 1" s... 131 3.5e-05 1
TIGR_CMR|BA_5426 - symbol:BA_5426 "comF operon protein 1"... 131 3.5e-05 1
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli... 132 4.4e-05 1
GENEDB_PFALCIPARUM|PF14_0655 - symbol:PF14_0655 "RNA heli... 129 4.7e-05 1
UNIPROTKB|Q8IKF0 - symbol:H45 "Helicase 45" species:36329... 129 4.7e-05 1
DICTYBASE|DDB_G0288501 - symbol:ddx42 "DEAD/DEAH box heli... 134 4.9e-05 1
WB|WBGene00019245 - symbol:sacy-1 species:6239 "Caenorhab... 131 5.8e-05 1
WB|WBGene00011032 - symbol:R05D11.4 species:6239 "Caenorh... 133 6.0e-05 2
ASPGD|ASPL0000037981 - symbol:AN2932 species:162425 "Emer... 127 7.7e-05 1
FB|FBgn0001942 - symbol:eIF-4a "Eukaryotic initiation fac... 127 7.9e-05 1
UNIPROTKB|F1NTK9 - symbol:DDX54 "Uncharacterized protein"... 131 8.2e-05 1
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN... 128 8.6e-05 1
TAIR|locus:2148027 - symbol:UAP56b "homolog of human UAP5... 97 9.3e-05 2
UNIPROTKB|Q4K4K3 - symbol:dbpA "ATP-independent RNA helic... 127 9.9e-05 1
TIGR_CMR|CPS_4366 - symbol:CPS_4366 "primosomal protein N... 121 0.00010 2
UNIPROTKB|E2R5R1 - symbol:DDX51 "Uncharacterized protein"... 105 0.00010 2
UNIPROTKB|F1SUG7 - symbol:DDX21 "Uncharacterized protein"... 130 0.00011 1
MGI|MGI:1919240 - symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) bo... 130 0.00011 1
UNIPROTKB|Q81QF0 - symbol:BAS2301 "ATP-dependent RNA heli... 126 0.00012 1
WARNING: Descriptions of 30 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2078673 [details] [associations]
symbol:AT3G02060 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006783 "heme biosynthetic process" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 Pfam:PF02559 GO:GO:0005524
EMBL:CP002686 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR003711 SMART:SM01058
SUPFAM:SSF141259 UniGene:At.18700 IPI:IPI00547719
RefSeq:NP_566160.1 ProteinModelPortal:F4JFJ3 SMR:F4JFJ3
PRIDE:F4JFJ3 EnsemblPlants:AT3G02060.1 GeneID:821294
KEGG:ath:AT3G02060 OMA:LAKQHYD ArrayExpress:F4JFJ3 Uniprot:F4JFJ3
Length = 823
Score = 2684 (949.9 bits), Expect = 2.8e-279, P = 2.8e-279
Identities = 520/630 (82%), Positives = 573/630 (90%)
Query: 14 IMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 73
+++ Y+ PNETKRPRTLS+LSDT+ WERRKTKGKVAIQKMVVDLMELYLHRL+QKR PY
Sbjct: 195 LLYRYNL-PNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHRLRQKRYPY 253
Query: 74 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133
PKNP +A+FAAQFPY TPDQK+AFLDVE+DLTERETPMDRLICGDVGFGKTEVALRAIF
Sbjct: 254 PKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIF 313
Query: 134 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 193
CVVS GKQAMVLAPTIVLAKQH+DV+SERFS YP IKVGLLSRFQ+KAEKEE+L+MIK G
Sbjct: 314 CVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTG 373
Query: 194 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 253
HLNIIVGTHSLLGSRVVY+NLGLLVVDEEQRFGVKQKEKIASFK SVDVLTLSATPIPRT
Sbjct: 374 HLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRT 433
Query: 254 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 313
LYLALTGFRDASLISTPPPER+PIKTHLS+F KEKVI AIK ELDRGGQVFYVLPRIKGL
Sbjct: 434 LYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEAIKNELDRGGQVFYVLPRIKGL 493
Query: 314 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 373
EE MDFL++AFP +DIA+AHG+QYS+QLEETME+FAQG IKILICTNIVESGLDIQNANT
Sbjct: 494 EEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANT 553
Query: 374 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQG 433
II+QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQ GQG
Sbjct: 554 IIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQG 613
Query: 434 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 493
FQLAEKDMGIRGFGTIFGEQQTGDVGNVG+DLFFEMLFESLSKV+E + SVPY V+ID
Sbjct: 614 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEELRIFSVPYDLVKID 673
Query: 494 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553
ININPRLPSEY+N+LENPME+++EAEKAAE+D+W LMQFTE+LRRQYGKEPYSMEI+LKK
Sbjct: 674 ININPRLPSEYVNYLENPMEIIHEAEKAAEKDMWSLMQFTENLRRQYGKEPYSMEIILKK 733
Query: 554 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAXX 613
LYVRRMAAD+G+ +IYASGKMV MKTNM+KKVFK++ DSMT +V+R+SL +EGDQI A
Sbjct: 734 LYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAEL 793
Query: 614 XXXXXXXXXXNWIFQCLAELYASLPALIKY 643
NW+FQCL+EL+ASLPALIKY
Sbjct: 794 LLELPREQLLNWMFQCLSELHASLPALIKY 823
>TIGR_CMR|CHY_0200 [details] [associations]
symbol:CHY_0200 "transcription-repair coupling factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684 GO:GO:0006281
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259 eggNOG:COG1197
KO:K03723 TIGRFAMs:TIGR00580 HOGENOM:HOG000216591
RefSeq:YP_359072.1 ProteinModelPortal:Q3AFL2 STRING:Q3AFL2
GeneID:3728597 KEGG:chy:CHY_0200 PATRIC:21273579 OMA:ERINMYK
BioCyc:CHYD246194:GJCN-201-MONOMER Uniprot:Q3AFL2
Length = 1160
Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
Identities = 220/561 (39%), Positives = 349/561 (62%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA---EFAA 84
P LS+L + W+R K + K A+++M L+ELY R+ +P + +P EF
Sbjct: 559 PPKLSRLGGSD-WQRVKNRVKAAVREMAEGLLELYAKRMA--KPGFAFSPDTVWQKEFEE 615
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
+FPYE TPDQ KA +V+RD+ E+ MDRL+CGDVG+GKTEVALRA F V GKQ V
Sbjct: 616 RFPYEETPDQLKAIEEVKRDM-EKPKVMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAV 674
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
L PT +LA+QH++ ERFS YP +++ LLSRFQ+ E++E + +K G ++I++GTH L
Sbjct: 675 LTPTTLLAQQHYNTFKERFSGYP-VEIRLLSRFQTAREQKEIIKELKRGKVDIVIGTHRL 733
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264
L V + +LGL++VDEEQRFGV QKE++ +VDVLTL+ATPIPRTL++AL G RD
Sbjct: 734 LQDDVQFYDLGLMIVDEEQRFGVAQKERLKILTETVDVLTLTATPIPRTLHMALMGIRDL 793
Query: 265 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 324
S+++TPP R P++T++ + AI+ EL RGGQVF+V R+ ++E ++Q
Sbjct: 794 SVLNTPPENRFPVQTYVLEEDPFIIRDAIRRELGRGGQVFFVHNRVSDIDEVAAWVQSLV 853
Query: 325 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 384
P +A+AHGQ QLE M +F G +L+ T I+E+G+D+ N NT+I+++ +FGL
Sbjct: 854 PEAKVAVAHGQMKEEQLERVMLEFISGKYDVLVSTTIIETGIDLPNVNTLIIKNADRFGL 913
Query: 385 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIR 444
AQLYQLRGRVGR+++ A+AYL Y +L + G G +LA +D+ IR
Sbjct: 914 AQLYQLRGRVGRSNRIAYAYLMYEKDKVLREAAEKRLAAIKEFTEFGSGLKLAMRDLEIR 973
Query: 445 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEY 504
G G + G +Q G + VG D++ ++L E+++++ V S + Q+++N+ +P Y
Sbjct: 974 GAGNLLGPEQHGHIAAVGFDMYMKLLQETVAELKGQ-VTSEEVEP-QLELNLTAYIPESY 1031
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
I + +EM + +++ L + L ++G+ P +E L++ + ++ +A+ +
Sbjct: 1032 IPDEKQKIEMYRRLSRT--RNLEDLEDVVDELIDRFGEIPPEVENLIRLIKIKIVASKLK 1089
Query: 565 ITKIYASGKMVGMKTNMNKKV 585
+ I+ + + + ++ N ++
Sbjct: 1090 VKGIFQTDEELKIQFFPNPEI 1110
>TIGR_CMR|GSU_0017 [details] [associations]
symbol:GSU_0017 "transcription-repair coupling factor"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
GO:GO:0003684 GO:GO:0006281 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259 KO:K03723
OMA:QAYAYLM TIGRFAMs:TIGR00580 HOGENOM:HOG000216591
RefSeq:NP_951079.1 ProteinModelPortal:Q74H75 GeneID:2685756
KEGG:gsu:GSU0017 PATRIC:22022771 ProtClustDB:CLSK827589
BioCyc:GSUL243231:GH27-22-MONOMER Uniprot:Q74H75
Length = 1157
Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
Identities = 224/541 (41%), Positives = 328/541 (60%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAE 81
+E PR + +L T+ WE+ K K + A+Q+M +L+ +Y R L + P + E
Sbjct: 554 SEGIEPR-VDRLGGTS-WEKAKGKARAAVQEMAEELLRIYAARQLHEGHRFSPPDDLYRE 611
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A F YE T DQ A DV D+T PMDRL+CGDVG+GKTEVA+R F V GKQ
Sbjct: 612 FEASFAYEETSDQLAAIEDVIADMTSNR-PMDRLVCGDVGYGKTEVAMRGAFKAVMDGKQ 670
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
VL PT VLA+QH + R YP + + ++SRF++ E+++ L+ +K G +++I+GT
Sbjct: 671 VAVLVPTTVLAQQHLETFRARLGAYP-VTIEMVSRFRTPKEQKDILERVKKGTVDVIIGT 729
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL + V + +LGLL+VDEEQRFGV KEK+ +K +VD+LTL+ATPIPRTLY++L G
Sbjct: 730 HRLLQNDVTFKDLGLLIVDEEQRFGVTHKEKLKKYKAAVDILTLTATPIPRTLYMSLMGI 789
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP +RL +KT ++ S E + A+ EL RGGQVF+V R++ + + L+
Sbjct: 790 RDLSIIDTPPVDRLAVKTFVARTSDELIREAVLRELRRGGQVFFVHNRVQSIGAWYEHLR 849
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P IA+ HGQ +LE+ M F G +L+CT I+ESGLDI +ANT+IV
Sbjct: 850 RIVPEAKIAVGHGQMDEGELEKVMLGFMHGETNLLLCTTIIESGLDIPSANTLIVDRADT 909
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDM 441
FGLAQLYQLRGRVGR+ + A+AYL P + +S G GF+LA D+
Sbjct: 910 FGLAQLYQLRGRVGRSRQRAYAYLLIPGEGAISSDARERLRIIQELNELGAGFRLATHDL 969
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ-PR- 499
IRG G + G +Q+G++ VG DL+ E+L E++ K+ P + V+ +IN+ P
Sbjct: 970 EIRGAGDLLGAKQSGNIAAVGFDLYTELLEEAVQKLKGE----EPVERVEPEINLRVPAF 1025
Query: 500 LPSEYINHLENPMEMVNEAEKA-AEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P +Y+ + + + +A AE+++ +M E L ++G P + LL + +R
Sbjct: 1026 IPEDYVREPNQRLVIYKKLTQATAEEEVGEVM---EELVDRFGTLPLAASYLLDVMKLRI 1082
Query: 559 M 559
M
Sbjct: 1083 M 1083
>TIGR_CMR|ECH_0250 [details] [associations]
symbol:ECH_0250 "transcription-repair coupling factor"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003684 GO:GO:0006281
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259 eggNOG:COG1197
HOGENOM:HOG000216592 KO:K03723 TIGRFAMs:TIGR00580
RefSeq:YP_507071.1 ProteinModelPortal:Q2GHL2 STRING:Q2GHL2
GeneID:3927985 KEGG:ech:ECH_0250 PATRIC:20576019 OMA:DHININI
ProtClustDB:CLSK749334 BioCyc:ECHA205920:GJNR-250-MONOMER
Uniprot:Q2GHL2
Length = 1134
Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
Identities = 221/580 (38%), Positives = 348/580 (60%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYL-HRLKQKRPPYPKNPAIAEFAAQFPY 88
TL KL +T+W++RKTK K I+K+ +L+ + RL + +P + F +F Y
Sbjct: 535 TLDKLG-STSWQQRKTKIKNHIKKIAKELLTIEAARRLSTGKSFFP-DENYKHFCNEFSY 592
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
T DQ +A D+E DL+ + M+RLICGDVGFGKTE+ALRA F V S Q ++ PT
Sbjct: 593 TETEDQLQAIKDMEHDLSSGKI-MNRLICGDVGFGKTEIALRAAFLVASQNYQVAIIVPT 651
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
+L +QHF V +ERF K+P+IK+ LS+ +++E ++ + + G ++II+GTH++L
Sbjct: 652 TLLCRQHFIVFTERFKKFPNIKIKQLSKIVARSEIKKTKESLSCGQVHIIIGTHAILAQD 711
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
V + NL LL++DEEQ+FGVKQKE + K +V V++LSATPIPRTLY++L G +D SLI
Sbjct: 712 VTFANLSLLIIDEEQQFGVKQKELLKKIKTNVHVISLSATPIPRTLYMSLCGIKDLSLIK 771
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
TPP RL + T+ + + + + AI E +RGG+VFYV P+I ++ D +++ P +
Sbjct: 772 TPPKNRLAVTTYTTYYEETIIKDAIIREHNRGGRVFYVCPQISNIKSISDKIRKLVPEIK 831
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+ AHGQ QL+ M F G IL+ T+I+E GLDI ANTII+ + FGLAQLY
Sbjct: 832 MNTAHGQLSPTQLDTIMNDFFDGKFTILLTTSIIECGLDIPFANTIIIHNADMFGLAQLY 891
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGT 448
QL+GRVGR+ + AY +K+ +++ GF L+ DM IRGFG
Sbjct: 892 QLKGRVGRSSTKGFAYFILSEKA--TNKSAIKLEIIQSIDSINSGFNLSLHDMDIRGFGN 949
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHL 508
+ GE+Q+G++ ++G++L+ +ML E L+ E+ + I+IN+N R+P YI +
Sbjct: 950 LVGEEQSGNIKDIGIELYQQMLEEELNIYSEY---PKDLDHINININVNIRIPEHYIQDI 1006
Query: 509 ENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITK 567
M + + ++DI + L ++GK P +E LL +Y++++ A+IGI +
Sbjct: 1007 GLRMRVYKKIGSLKTKEDI---DNYYIELTNKFGKLPNEVENLLNTIYIKQLCANIGIYE 1063
Query: 568 IYASGKMVGMK----TNMNKKVFKMMIDS-MTSEVHRNSL 602
+ + +K T + +K+ I++ +T ++ NS+
Sbjct: 1064 VEQIKNSILLKIDSNTTLKQKILNYFINNPLTFKIQNNSI 1103
>TIGR_CMR|BA_0052 [details] [associations]
symbol:BA_0052 "transcription-repair coupling factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006281 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259
KO:K03723 TIGRFAMs:TIGR00580 HOGENOM:HOG000216591 OMA:ITEHEIY
RefSeq:NP_842621.1 RefSeq:YP_016655.1 RefSeq:YP_026339.1
HSSP:Q9WY48 ProteinModelPortal:Q81VY7 IntAct:Q81VY7 DNASU:1084914
EnsemblBacteria:EBBACT00000010195 EnsemblBacteria:EBBACT00000018477
EnsemblBacteria:EBBACT00000022406 GeneID:1084914 GeneID:2816263
GeneID:2851421 KEGG:ban:BA_0052 KEGG:bar:GBAA_0052 KEGG:bat:BAS0052
ProtClustDB:CLSK872606 BioCyc:BANT260799:GJAJ-59-MONOMER
BioCyc:BANT261594:GJ7F-61-MONOMER Uniprot:Q81VY7
Length = 1176
Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
Identities = 209/540 (38%), Positives = 329/540 (60%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ KL W++ KTK + ++Q + DL++LY R K Y P E
Sbjct: 558 SEGKDPKVY-KLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ
Sbjct: 616 FESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K G ++I++GT
Sbjct: 675 VAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADR 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +LS+ G GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G +Q G + +VG DL+ +ML +++ + + +V+ID+ ++ LP
Sbjct: 974 SIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV-NVEIDLEVDAYLP 1032
Query: 502 SEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
YI+ + + M + +A +DI + E + ++G P + LL+ ++ +A
Sbjct: 1033 DAYISDSKQKIMMYKQFRGVSAIEDI---EELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>TIGR_CMR|DET_1281 [details] [associations]
symbol:DET_1281 "transcription-repair coupling factor"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR001650 InterPro:IPR004576 InterPro:IPR005118
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF03461
PROSITE:PS51194 SMART:SM00490 SMART:SM00982 Pfam:PF02559
GO:GO:0005524 GO:GO:0003684 GO:GO:0006281 EMBL:CP000027
GenomeReviews:CP000027_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR003711 SMART:SM01058
SUPFAM:SSF141259 eggNOG:COG1197 KO:K03723 TIGRFAMs:TIGR00580
HOGENOM:HOG000216591 RefSeq:YP_181993.1 ProteinModelPortal:Q3Z706
STRING:Q3Z706 GeneID:3229394 KEGG:det:DET1281 PATRIC:21609591
OMA:ITEHEIY ProtClustDB:CLSK2459055
BioCyc:DETH243164:GJNF-1282-MONOMER Uniprot:Q3Z706
Length = 1148
Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
Identities = 224/592 (37%), Positives = 349/592 (58%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQF 86
P +L +L T W+R K K + ++ +L+++Y R P+ + E A F
Sbjct: 546 PPSLHRLG-TQEWQRAKEKASESAEETARELLDIYAKRKMASGYPFSTDTVWQQEMEASF 604
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
PY TPDQ KA D++ D+ E PMDRLI GDVG+GKTEVA+RA F V GKQ VL
Sbjct: 605 PYLETPDQLKALYDIKADM-ENPRPMDRLILGDVGYGKTEVAIRAAFKAVMDGKQVAVLV 663
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT VLA+QH+ ER + +P +K+ +LSRF S +E++ ++ ++ G ++I +GTH L+
Sbjct: 664 PTTVLAQQHYTTFRERLATFP-VKIEVLSRFCSPSEQKTTVENLERGEVDICIGTHRLIQ 722
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
+ + + +LGL+++DEEQRFGV KE + VDVLTLSATPIPRTL+++L G RD S+
Sbjct: 723 ADITFKDLGLVIIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSLVGVRDMSI 782
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I TPP ERLPIKT ++AF + + AI E++R GQVF+V R+ G+ + +QQ P
Sbjct: 783 IETPPGERLPIKTVVAAFDERLIREAILREMERNGQVFFVNNRVMGINLLAERIQQLVPE 842
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
I IAHGQ +L M F + + +L+CT I+ESG+D+ NANT+I+ +FGL Q
Sbjct: 843 ARIGIAHGQMAEEKLAAVMADFVRHELDVLVCTTIIESGVDVPNANTLIINRADRFGLTQ 902
Query: 387 LYQLRGRVGRADKEAHAYLFYP-DKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRG 445
LYQLRGRVGR+ + A+AY Y DK L SD G G+ +A KD+ IRG
Sbjct: 903 LYQLRGRVGRSSQLAYAYFLYEKDKRLTSD-AEKRLKTIYEAAELGAGYGIAMKDLEIRG 961
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFES----------LSKVDEHCVISVPYKSVQIDIN 495
GT+ G +Q+G + +VG +L+ +ML E+ LSK +E + ++P + ++D+
Sbjct: 962 AGTLLGVKQSGYINSVGFNLYTQMLSEAVAGLKAKGSGLSK-EEIRIQNMP--APKLDLP 1018
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
++ +P YI L+ + + + +A ++ +++ + L ++G+ P +E LL L
Sbjct: 1019 LDAFIPEYYIQDLDLRLSIYQQL--SAITNLAGVLEKEKELADRFGQIPPELENLLYSLR 1076
Query: 556 VRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEV--HRNSLTFE 605
+R +A + I G + ++ + K +++ + + V RN ++ +
Sbjct: 1077 LRLLAKKAHVDTIVTEGSQIVVRMLGGLIINKTLLEPLRAGVLVGRNQVSVQ 1128
>TIGR_CMR|SO_2255 [details] [associations]
symbol:SO_2255 "transcription-repair coupling factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=ISS]
InterPro:IPR001650 InterPro:IPR004576 InterPro:IPR005118
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF03461
PROSITE:PS51194 SMART:SM00490 SMART:SM00982 Pfam:PF02559
GO:GO:0005524 GO:GO:0003684 GO:GO:0006281 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR003711 SMART:SM01058
SUPFAM:SSF141259 HOGENOM:HOG000216592 KO:K03723 OMA:QAYAYLM
TIGRFAMs:TIGR00580 HSSP:Q9WY48 RefSeq:NP_717851.1
ProteinModelPortal:Q8EEV8 GeneID:1169985 KEGG:son:SO_2255
PATRIC:23524129 ProtClustDB:CLSK906653 Uniprot:Q8EEV8
Length = 1164
Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
Identities = 204/549 (37%), Positives = 321/549 (58%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNPAIAEFAAQFP 87
L+KL + T W + K K I+ + +L+++Y R Q RP + A+FA FP
Sbjct: 552 LNKLGNDT-WAKAKNKAIEKIRDVAAELLDVYARR--QARPGESCEINDEEYAQFAQGFP 608
Query: 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147
+E T DQ+ A V D+ + T MDRL+CGDVGFGKTEVA+RA F V+ GKQ +VL P
Sbjct: 609 FEETVDQESAIHAVLADM-QSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVVVLVP 667
Query: 148 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS 207
T +LA+QH++ +RF+ +P + + ++SRF++ E+ + L ++ G ++I++GTH LL S
Sbjct: 668 TTLLAQQHYENFKDRFADWP-VVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQS 726
Query: 208 RVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI 267
+ NLGLL++DEE RFGV+QKEKI + + +VD+LTL+ATPIPRTL +A++G RD S+I
Sbjct: 727 EAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSII 786
Query: 268 STPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGV 327
+TPP +RL +KT + V AI E+ RGGQV+Y+ ++ +E+ + P
Sbjct: 787 ATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPEA 846
Query: 328 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 387
+ +AHGQ R LE M F +L+CT I+E+G+D+ +ANTII++ FGLAQL
Sbjct: 847 RVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQL 906
Query: 388 YQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFG 447
+QLRGRVGR+ +A+AYL P ++ G GF LA +D+ IRG G
Sbjct: 907 HQLRGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRGAG 966
Query: 448 TIFGEQQTGDVGNVGVDLFFEML---FESLSKVDEHCVISVPYKSVQIDININPRLPSEY 504
+ G++Q+G + +G L+ EML ++L + E + + + ++++ I LP +Y
Sbjct: 967 ELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIPALLPEDY 1026
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
+ + + + ++ L + L ++G P + + L++ + A +G
Sbjct: 1027 VGDVNIRLSLYKRIASCDSEE--ALDELKVELIDRFGLLPDATKNLMEMTLYKHQATRLG 1084
Query: 565 ITKIYASGK 573
TKI K
Sbjct: 1085 ATKIEVHAK 1093
>TIGR_CMR|SPO_2074 [details] [associations]
symbol:SPO_2074 "transcription-repair coupling factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003684 GO:GO:0006281
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259
HOGENOM:HOG000216592 KO:K03723 OMA:QAYAYLM TIGRFAMs:TIGR00580
RefSeq:YP_167304.1 ProteinModelPortal:Q5LRQ1 GeneID:3193158
KEGG:sil:SPO2074 PATRIC:23377489 ProtClustDB:CLSK863099
Uniprot:Q5LRQ1
Length = 1142
Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
Identities = 215/535 (40%), Positives = 312/535 (58%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNP-AIAEFAAQFPYEPTPDQKKA 97
AW+ +K K K I++M L+ + R +K P P A +F+A+FPY+ T DQ +A
Sbjct: 537 AWQAKKAKLKERIREMADRLIRVAAERALRKAPVMDPPPHAWEDFSARFPYQETDDQLRA 596
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157
DV DL PMDRLICGDVGFGKTEVA+RA F +G Q V+APT +LA+QH
Sbjct: 597 IGDVMDDL-HSGMPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVIAPTTLLARQHAA 655
Query: 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217
+RF +P ++V LSRF S E ++ + + G ++I++GTH+LL + + NLGLL
Sbjct: 656 SFRDRFRGFP-LEVRQLSRFISAKEAQQTREGLARGTVDIVIGTHALLAKGIRFQNLGLL 714
Query: 218 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 277
++DEEQ FGV KE++ + V VLTL+ATPIPRTL L+LTG RD S+I TPP +RL I
Sbjct: 715 IIDEEQHFGVGHKERLKQLRSDVHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPIDRLAI 774
Query: 278 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 337
+T++S F V A+ E RGGQ FYV+PRI L + FL++ P + +AHGQ
Sbjct: 775 RTYVSEFDAVTVREALLREHYRGGQSFYVVPRITDLPDIEAFLKEQLPELTYVVAHGQMA 834
Query: 338 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 397
+ +L++ M F G +L+ T IVESGLDI ANT++V FGLAQLYQ+RGRVGR+
Sbjct: 835 AGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRGRVGRS 894
Query: 398 DKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGD 457
A+AYL ++ L+ G GF LA +D+ IRG G + GE+Q+G
Sbjct: 895 KARAYAYLTTKPRARLTPAAEKRLRVLASLDTLGAGFSLASQDLDIRGAGNLLGEEQSGQ 954
Query: 458 VGNVGVDLFFEMLFESLSKVDEHCVISVPYK----SVQIDININPRLPSEYINHLENPME 513
+ +VG +L+ ML E+++K+ + + + QI++ + +P EY+ L+ +
Sbjct: 955 MPDVGYELYQSMLEEAIAKIRSGQMEGLSEADDQWAPQINLGVPVLIPEEYVPDLDVRLG 1014
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+ + L F L ++GK P + LL + ++ M GI K+
Sbjct: 1015 LYRRLSSLTTKVE--LEGFAAELIDRFGKLPKEVNTLLLVVRIKAMCKRAGIAKL 1067
>TIGR_CMR|CBU_1148 [details] [associations]
symbol:CBU_1148 "transcription-repair coupling factor"
species:227377 "Coxiella burnetii RSA 493" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
GO:GO:0003684 GO:GO:0006281 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259
HOGENOM:HOG000216592 KO:K03723 OMA:QAYAYLM TIGRFAMs:TIGR00580
HSSP:Q9WY48 RefSeq:NP_820146.1 ProteinModelPortal:Q83CG9
GeneID:1209050 KEGG:cbu:CBU_1148 PATRIC:17931027
ProtClustDB:CLSK914576 BioCyc:CBUR227377:GJ7S-1138-MONOMER
Uniprot:Q83CG9
Length = 1157
Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
Identities = 213/548 (38%), Positives = 318/548 (58%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQFPYE 89
L KL + WE+ K K + I+ + +L+++Y R + + F FP+E
Sbjct: 556 LQKLG-SKQWEKIKEKTQKHIRDVAAELLDIYSRRQAATGFTFSIPEKEYSLFRQAFPFE 614
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ A DV D++ + + MDRLICGDVGFGKTEVA++A F V KQ VL PT
Sbjct: 615 ETPDQSAAINDVIVDMSSKRS-MDRLICGDVGFGKTEVAMQAAFIAVQNNKQVAVLVPTT 673
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QHF +RF+ +P +++ +SR +++ ++++ + G ++II+GTH LL +
Sbjct: 674 LLAEQHFYNFQDRFADWP-VRIAAISRLRTQKQRQQITQELAEGKIDIIIGTHKLLSKDI 732
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL+VDEE RFGV QKE+I S + VD+LTL+ATPIPRTL ++L+G RD SLI+T
Sbjct: 733 RFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNMSLSGIRDLSLITT 792
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP +RL +KT + +S + AI E RGGQV+++ + L + L+ P +
Sbjct: 793 PPAKRLSVKTFVHDYSPVLIREAILRENLRGGQVYFLHNDVATLAATAEKLRTIIPEARL 852
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
AIAHGQ R LE M F +L+CT I+ESG+DI ANTII+ +FGLAQL+Q
Sbjct: 853 AIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIINRADRFGLAQLHQ 912
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTI 449
LRGRVGR+ +A+AYL PD+ L+ G GF LA D+ IRG G +
Sbjct: 913 LRGRVGRSHHQAYAYLLIPDQEALTADAEKRLSAISQLDDLGVGFNLATHDLEIRGAGEL 972
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSV-QIDININPRLPSEYIN 506
G +Q+G + ++G L+ E+L E++S K P +V +ID+ I LP +Y+
Sbjct: 973 LGVEQSGQIHDIGFSLYLELLEEAVSALKAGREPQFEKPLHAVSEIDLGITTLLPEDYVP 1032
Query: 507 HLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
+ + + A +++I L E L ++G P + + LL+ +R +A ++GI
Sbjct: 1033 DVNARLILYKRLANCKNKREIQALK---EELIDRFGPLPPAAQHLLQSAELRLIANELGI 1089
Query: 566 TKIYASGK 573
KI K
Sbjct: 1090 QKINIGSK 1097
>UNIPROTKB|Q9KQW2 [details] [associations]
symbol:VC1886 "Transcription-repair coupling factor"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
GO:GO:0003684 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0016887
GO:GO:0003690 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259
KO:K03723 OMA:QAYAYLM TIGRFAMs:TIGR00580 HSSP:Q9WY48 EMBL:AE004264
PIR:E82144 RefSeq:NP_231520.1 ProteinModelPortal:Q9KQW2
DNASU:2613640 GeneID:2613640 KEGG:vch:VC1886 PATRIC:20082814
ProtClustDB:CLSK874583 Uniprot:Q9KQW2
Length = 1155
Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
Identities = 211/545 (38%), Positives = 318/545 (58%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYE 89
L KL AW + + K ++ + +L+++Y R +K + A F A FP+E
Sbjct: 547 LHKLGGE-AWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFE 605
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
T DQ A V D+ + + MDRL+CGDVGFGKTEVA+RA F GKQ VL PT
Sbjct: 606 ETDDQAMAINAVLSDMCQAKA-MDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTT 664
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QHF+ +RF+ P I+V +LSRF+S E+++ L + G ++I+VGTH LL S +
Sbjct: 665 LLAQQHFENFRDRFANLP-IRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEI 723
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL+VDEE RFGV+QKEK+ + + VD+LTL+ATPIPRTL +A++G RD S+I+T
Sbjct: 724 RFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIAT 783
Query: 270 PPPERLPIKTHLSAFSKEKVI-SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
PP RL IKT + S++ VI A+ E+ RGGQV+++ +++ +++ L++ P
Sbjct: 784 PPARRLAIKTFVRQ-SEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEAR 842
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
I +AHGQ R+LE+ M F +L+CT I+E+G+D+ ANTII+ GLAQL+
Sbjct: 843 ITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLH 902
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGT 448
QLRGRVGR+ +A+AYL P ++ G GF LA D+ IRG G
Sbjct: 903 QLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGE 962
Query: 449 IFGEQQTGDVGNVGVDLFFEML---FESLSKVDEHCVISVPYKSVQIDININPRLPSEYI 505
+ GE+Q+G + +VG L+ EML E+L E + + + ++++ + LP EYI
Sbjct: 963 LLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYI 1022
Query: 506 NHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
+ + M + A +D L + L ++GK P + LL ++ A + +
Sbjct: 1023 PDINTRLSMYKQIASVASKDE--LAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKV 1080
Query: 566 TKIYA 570
KI A
Sbjct: 1081 RKIEA 1085
>TIGR_CMR|VC_1886 [details] [associations]
symbol:VC_1886 "transcription-repair coupling factor"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
GO:GO:0003684 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0016887
GO:GO:0003690 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259
KO:K03723 OMA:QAYAYLM TIGRFAMs:TIGR00580 HSSP:Q9WY48 EMBL:AE004264
PIR:E82144 RefSeq:NP_231520.1 ProteinModelPortal:Q9KQW2
DNASU:2613640 GeneID:2613640 KEGG:vch:VC1886 PATRIC:20082814
ProtClustDB:CLSK874583 Uniprot:Q9KQW2
Length = 1155
Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
Identities = 211/545 (38%), Positives = 318/545 (58%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYE 89
L KL AW + + K ++ + +L+++Y R +K + A F A FP+E
Sbjct: 547 LHKLGGE-AWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFE 605
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
T DQ A V D+ + + MDRL+CGDVGFGKTEVA+RA F GKQ VL PT
Sbjct: 606 ETDDQAMAINAVLSDMCQAKA-MDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTT 664
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QHF+ +RF+ P I+V +LSRF+S E+++ L + G ++I+VGTH LL S +
Sbjct: 665 LLAQQHFENFRDRFANLP-IRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEI 723
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL+VDEE RFGV+QKEK+ + + VD+LTL+ATPIPRTL +A++G RD S+I+T
Sbjct: 724 RFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIAT 783
Query: 270 PPPERLPIKTHLSAFSKEKVI-SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
PP RL IKT + S++ VI A+ E+ RGGQV+++ +++ +++ L++ P
Sbjct: 784 PPARRLAIKTFVRQ-SEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEAR 842
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
I +AHGQ R+LE+ M F +L+CT I+E+G+D+ ANTII+ GLAQL+
Sbjct: 843 ITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLH 902
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGT 448
QLRGRVGR+ +A+AYL P ++ G GF LA D+ IRG G
Sbjct: 903 QLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGE 962
Query: 449 IFGEQQTGDVGNVGVDLFFEML---FESLSKVDEHCVISVPYKSVQIDININPRLPSEYI 505
+ GE+Q+G + +VG L+ EML E+L E + + + ++++ + LP EYI
Sbjct: 963 LLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYI 1022
Query: 506 NHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
+ + M + A +D L + L ++GK P + LL ++ A + +
Sbjct: 1023 PDINTRLSMYKQIASVASKDE--LAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKV 1080
Query: 566 TKIYA 570
KI A
Sbjct: 1081 RKIEA 1085
>UNIPROTKB|P30958 [details] [associations]
symbol:mfd species:83333 "Escherichia coli K-12"
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006974 "response
to DNA damage stimulus" evidence=IDA] [GO:0000716
"transcription-coupled nucleotide-excision repair, DNA damage
recognition" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004576
InterPro:IPR005118 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF03461 PROSITE:PS51194 SMART:SM00490 SMART:SM00982
Pfam:PF02559 GO:GO:0005524 GO:GO:0006355 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003684 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259
PIR:G64855 RefSeq:NP_415632.1 RefSeq:YP_489382.1 PDB:2B2N PDB:2EYQ
PDB:3HJH PDB:4DFC PDBsum:2B2N PDBsum:2EYQ PDBsum:3HJH PDBsum:4DFC
ProteinModelPortal:P30958 SMR:P30958 DIP:DIP-10199N IntAct:P30958
MINT:MINT-1231460 PaxDb:P30958 PRIDE:P30958
EnsemblBacteria:EBESCT00000004999 EnsemblBacteria:EBESCT00000005000
EnsemblBacteria:EBESCT00000014442 GeneID:12931092 GeneID:945681
KEGG:ecj:Y75_p1084 KEGG:eco:b1114 PATRIC:32117471 EchoBASE:EB1576
EcoGene:EG11619 eggNOG:COG1197 HOGENOM:HOG000216592 KO:K03723
OMA:QAYAYLM ProtClustDB:PRK10689 BioCyc:EcoCyc:EG11619-MONOMER
BioCyc:ECOL316407:JW1100-MONOMER EvolutionaryTrace:P30958
Genevestigator:P30958 GO:GO:0009380 GO:GO:0000716
TIGRFAMs:TIGR00580 Uniprot:P30958
Length = 1148
Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
Identities = 201/547 (36%), Positives = 314/547 (57%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE-FAAQFPYE 89
L KL AW R + K ++ + +L+++Y R ++ + + + F FP+E
Sbjct: 542 LHKLGGD-AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ +A V D+ + MDRL+CGDVGFGKTEVA+RA F V KQ VL PT
Sbjct: 601 TTPDQAQAINAVLSDMCQ-PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 659
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH+D +RF+ +P +++ ++SRF+S E+ + L + G ++I++GTH LL S V
Sbjct: 660 LLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL+VDEE RFGV+ KE+I + + +VD+LTL+ATPIPRTL +A++G RD S+I+T
Sbjct: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP RL +KT + + V AI E+ RGGQV+Y+ ++ +++ + L + P I
Sbjct: 779 PPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARI 838
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
AI HGQ R+LE M F +L+CT I+E+G+DI ANTII++ FGLAQL+Q
Sbjct: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTI 449
LRGRVGR+ +A+A+L P ++ G GF LA D+ IRG G +
Sbjct: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958
Query: 450 FGEQQTGDVGNVGVDLFFEML---FESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
GE+Q+G + +G L+ E+L ++L E + + + ++++ + LP ++I
Sbjct: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIP 1018
Query: 507 HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGIT 566
+ + A ++ L + L ++G P LL +R+ A +GI
Sbjct: 1019 DVNTRLSFYKRIASAKTENE--LEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR 1076
Query: 567 KIYASGK 573
K+ + K
Sbjct: 1077 KLEGNEK 1083
>TIGR_CMR|APH_0107 [details] [associations]
symbol:APH_0107 "transcription-repair coupling factor"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
GO:GO:0003684 GO:GO:0006281 EMBL:CP000235 GenomeReviews:CP000235_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259 eggNOG:COG1197
HOGENOM:HOG000216592 KO:K03723 TIGRFAMs:TIGR00580
ProtClustDB:CLSK749334 RefSeq:YP_504735.1 ProteinModelPortal:Q2GLL6
STRING:Q2GLL6 GeneID:3931221 KEGG:aph:APH_0107 PATRIC:20948776
OMA:VIIRDAL BioCyc:APHA212042:GHPM-142-MONOMER Uniprot:Q2GLL6
Length = 1139
Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
Identities = 208/543 (38%), Positives = 318/543 (58%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEP 90
L +L ++AW ++ K K I + L+ R + + +F + PY
Sbjct: 527 LDRLG-SSAWHDKQNKLKKRIDDIAKTLLHAEAMRKLADGSRFLPSSLYIDFCKECPYVE 585
Query: 91 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK--QAMVLAPT 148
T DQ KA DVE DL R MDRLICGDVGFGKTE+ALRA F VV+ Q VL PT
Sbjct: 586 TEDQLKAIADVENDLA-RGKVMDRLICGDVGFGKTEIALRAAFLVVNEDITCQVAVLVPT 644
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
+L +QHF ERF Y + + LS+ +K +K++ + ++ G +NII+GT +LL
Sbjct: 645 TLLCRQHFLAFKERFKNYK-VNIQQLSKATAK-KKQQIREGLEEGSINIIIGTSALLSDS 702
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
+ + +L LL++DEEQ FGV+QKEK+ K V VL+LSATPIPRTL+++L+ +D S++
Sbjct: 703 IQFLDLRLLIIDEEQHFGVQQKEKLRLLKHDVHVLSLSATPIPRTLHMSLSNIKDLSILR 762
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
TPP R ++ ++ F ++ + +AI E++RGG+VF+ P I +E + LQ+ P V
Sbjct: 763 TPPIGRTTVEISITHFDEKTIKTAILNEVNRGGRVFFTCPLIADIEPVLTRLQKLVPEVK 822
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
IA+AHG L++ M F G +L+ T+I+ESG+DI ANTII+ + FGLAQLY
Sbjct: 823 IAVAHGGTAPLALDKIMNDFFDGKFSLLLTTSIIESGIDIPFANTIIIYNADMFGLAQLY 882
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGT 448
QL+GRVGR+ + +AYL +K+ + G GF L+ +DM +RGFG
Sbjct: 883 QLKGRVGRSTTQGYAYLILSNKATSNSPGMKRLEALKSLNSVGSGFALSLQDMDMRGFGN 942
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS-VPYKSVQIDININPRLPSEYINH 507
+ GE+Q+G++ VG++L+ ML E+L S V ++++DIN N R+P YI
Sbjct: 943 LVGEEQSGNIKEVGIELYHRMLEEALETCKMTTESSAVSCHNIKVDINANVRIPESYIQE 1002
Query: 508 LENPMEMVNEAE--KAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
LE M++ + K E+ + +++E L+ ++G P + LL ++++ + A IGI
Sbjct: 1003 LELRMQVYKKISSLKTPEE----ISRYSEELKDRFGMPPREVINLLDIIHIKHLCARIGI 1058
Query: 566 TKI 568
+I
Sbjct: 1059 AEI 1061
>UNIPROTKB|P64326 [details] [associations]
symbol:mfd "Transcription-repair-coupling factor"
species:1773 "Mycobacterium tuberculosis" [GO:0005829 "cytosol"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001650 InterPro:IPR004576 InterPro:IPR005118
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF03461
PROSITE:PS51194 SMART:SM00490 SMART:SM00982 Pfam:PF02559
GO:GO:0005829 GO:GO:0005886 GO:GO:0005524 EMBL:BX842575
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0003684 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR003711 SMART:SM01058
SUPFAM:SSF141259 eggNOG:COG1197 KO:K03723 TIGRFAMs:TIGR00580
PIR:G70622 RefSeq:NP_215536.1 RefSeq:NP_335485.1
RefSeq:YP_006514381.1 ProteinModelPortal:P64326 SMR:P64326
IntAct:P64326 PRIDE:P64326 EnsemblBacteria:EBMYCT00000001215
EnsemblBacteria:EBMYCT00000069023 GeneID:13319583 GeneID:886077
GeneID:925151 KEGG:mtc:MT1048 KEGG:mtu:Rv1020 KEGG:mtv:RVBD_1020
PATRIC:18124052 TubercuList:Rv1020 HOGENOM:HOG000216591 OMA:DVFPPTE
ProtClustDB:CLSK871887 Uniprot:P64326
Length = 1234
Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
Identities = 213/554 (38%), Positives = 315/554 (56%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFP 87
LS+L + W KTK + A++++ +L+ LY R Q P + P P AE F
Sbjct: 590 LSRLGGSD-WANTKTKARRAVREIAGELVSLYAKR--QASPGHAFSPDTPWQAELEDAFG 646
Query: 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147
+ T DQ A +V+ D+ E+ PMDR+ICGDVG+GKTE+A+RA F V GKQ VL P
Sbjct: 647 FTETVDQLTAIEEVKADM-EKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 705
Query: 148 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS 207
T +LA QH ER S +P + + LSRF AE +D + G ++I++GTH LL +
Sbjct: 706 TTLLADQHLQTFGERMSGFP-VTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQT 764
Query: 208 RVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI 267
V + +LGL+VVDEEQRFGV+ KE I S + VDVLT+SATPIPRTL ++L G R+ S I
Sbjct: 765 GVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTI 824
Query: 268 STPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGV 327
TPP ER P+ T++ +++ +A++ EL R GQ FYV R+ ++ +++ P
Sbjct: 825 LTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEA 884
Query: 328 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 387
+ +AHGQ LE T+++F IL+CT IVE+GLDI NANT+IV+ FGL+QL
Sbjct: 885 RVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQL 944
Query: 388 YQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFG 447
+QLRGRVGR+ + +AY YP + L++ G G +A KD+ IRG G
Sbjct: 945 HQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAG 1004
Query: 448 TIFGEQQTGDVGNVGVDLFFEMLFESL--------SKVDEHCVISVPY-KSVQIDININP 498
+ G +Q+G V VG DL+ ++ E+L + D V + K V+ID+ ++
Sbjct: 1005 NVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDA 1064
Query: 499 RLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
LP +YI +E A ++++++ ++ + L +YG P L +R
Sbjct: 1065 HLPPDYIASDRLRLEGYRRLAAASSDREVAAVV---DELTDRYGALPEPARRLAAVARLR 1121
Query: 558 RMAADIGITKIYAS 571
+ GIT + A+
Sbjct: 1122 LLCRGSGITDVTAA 1135
>TIGR_CMR|CJE_1228 [details] [associations]
symbol:CJE_1228 "transcription-repair coupling factor"
species:195099 "Campylobacter jejuni RM1221" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
GO:GO:0003684 GO:GO:0006281 EMBL:CP000025 GenomeReviews:CP000025_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259 eggNOG:COG1197
KO:K03723 HOGENOM:HOG000216591 RefSeq:YP_179216.1
ProteinModelPortal:Q5HU19 STRING:Q5HU19 GeneID:3231735
KEGG:cjr:CJE1228 PATRIC:20044252 OMA:EDTQNIH ProtClustDB:CLSK872584
BioCyc:CJEJ195099:GJC0-1254-MONOMER Uniprot:Q5HU19
Length = 978
Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
Identities = 188/521 (36%), Positives = 290/521 (55%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEP 90
L K S E+ KTK +AI +V +M ++ K+ N +F A +
Sbjct: 412 LGKTSFIKLKEKLKTK-LLAIASEIV-IMAAKRSLVQAKKITVDLNRQ-TDFIASAGFIY 468
Query: 91 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 150
T DQ KA ++ +D + MDRL+ GDVGFGKTEVA+ AI+ VV +G A + APT +
Sbjct: 469 TSDQDKACHEILQDFQSGKV-MDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPTTL 527
Query: 151 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV 210
L+ QH+ + +RF + DIKV L RF S AEK++ L +K ++VGTH+LL V
Sbjct: 528 LSHQHYKTLKKRFDPF-DIKVFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALLS--VE 584
Query: 211 YNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTP 270
NL L+++DEE +FGVKQKEK+ + +L++SATPIPR+L AL+ + S++ TP
Sbjct: 585 CENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSVLQTP 644
Query: 271 PPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIA 330
P +R+ ++T + + AI EL RGGQ+FY+ I +E+ L + F + I
Sbjct: 645 PEDRMDVRTFVKENDDALLKEAIARELRRGGQIFYIHNHIASIEQCKKHLLELFSTLRIL 704
Query: 331 IAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 390
I H + ++ EE M KF +L+ T+IVESG+D+ NANTIIV+ +FG+A L+QL
Sbjct: 705 ILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVESGIDLPNANTIIVEKSDRFGMADLHQL 764
Query: 391 RGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIF 450
RGRVGR+DK+ + Y DK+ ++ G G LA D+ IRG G +
Sbjct: 765 RGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSLESNSFLGAGSILAYHDLEIRGGGNLL 824
Query: 451 GEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLEN 510
G Q+G + +G L+ +ML + L+ + ++ V K + + +N+N L SE I+
Sbjct: 825 GVDQSGHIEQIGYSLYLKMLEDELNALSKNEVDQKENK-LDLKLNVNAFLNSELISEDRL 883
Query: 511 PMEMVNEAEKAAEQDIWCLMQFTESLRRQYGK-EPYSMEIL 550
+E+ K EQ + + + + ++GK + Y+ + L
Sbjct: 884 RLELYRRLSKC-EQ-VHEVYEIEGEIEDRFGKLDIYTKQFL 922
>TIGR_CMR|CHY_1468 [details] [associations]
symbol:CHY_1468 "ATP-dependent DNA helicase RecG"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR004609 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006281 GO:GO:0003676 GO:GO:0006310
GO:GO:0004003 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1200
KO:K03655 ProtClustDB:PRK10917 TIGRFAMs:TIGR00643
RefSeq:YP_360300.1 ProteinModelPortal:Q3AC34 STRING:Q3AC34
GeneID:3726707 KEGG:chy:CHY_1468 PATRIC:21276067
HOGENOM:HOG000036619 OMA:ETYWVKH
BioCyc:CHYD246194:GJCN-1467-MONOMER Uniprot:Q3AC34
Length = 677
Score = 634 (228.2 bits), Expect = 4.8e-64, Sum P(2) = 4.8e-64
Identities = 155/456 (33%), Positives = 252/456 (55%)
Query: 22 PNETKRPRTLSKLSDTTA---WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA 78
P E R +L L + + ++A ++MV + L+ + + Y K P
Sbjct: 176 PEEILRKYSLPDLKQALMNLHFPESSEQSELARRRMVFEEFLLFFLAIGLYKENYQKKPG 235
Query: 79 IA---------EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 129
I +F P++ T Q+K + +++ DL ++ PM+RL+ GDVG GKT +A
Sbjct: 236 IVIAGSGELEKKFIDSLPFKLTSAQEKVWREIKEDLAAKK-PMNRLVQGDVGSGKTILAA 294
Query: 130 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 189
A+ V AG Q ++APT +LA+QH+ +S F+ IKV LLS S +KE
Sbjct: 295 LALVKAVEAGFQGALMAPTEILAEQHYLNLSRLFAPL-GIKVVLLSGSLSSGKKEAVYKA 353
Query: 190 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 249
IK+G+ ++I+GTH+L+ V+++NLGL V+DE+ RFGV+Q+ + + V+ L +SATP
Sbjct: 354 IKNGYADVIIGTHALIQEAVIFDNLGLAVIDEQHRFGVEQRSSLVEKGLYVNQLVMSATP 413
Query: 250 IPRTLYLALTGFRDASLISTPPPERLPIKTH-LSAFSKEKVISAIKYELDRGGQVFYVLP 308
IPRTL L L G D S++ P R PIKT+ LS+ K K + + ++ G Q + V P
Sbjct: 414 IPRTLALTLYGDLDVSIVDALPAGRKPIKTYWLSSQDKGKAYAFLLKQVAEGRQGYVVCP 473
Query: 309 --------RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN 360
+++ + + + L + FP + HG+ + EE ME F + I+IL+ T
Sbjct: 474 LVEESEKLQVEAVTKLYEKLSKKFPQFKWGLMHGRLKPAEKEEVMENFRKNNIQILVSTT 533
Query: 361 IVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXX 420
++E G+D+ NAN II++D +FGLAQL+Q+RGRVGR + +++ +L L + +
Sbjct: 534 VIEVGVDVPNANVIIIEDAWRFGLAQLHQIRGRVGRGEHQSYCFL------LGNPRNQEG 587
Query: 421 XXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTG 456
GF++AE+D+ +RG G + G +Q+G
Sbjct: 588 IVRMKIMEKYNDGFKIAEEDLKLRGPGELSGTRQSG 623
Score = 37 (18.1 bits), Expect = 4.8e-64, Sum P(2) = 4.8e-64
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDI 526
NPR E I ++ ME N+ K AE+D+
Sbjct: 581 NPR-NQEGIVRMKI-MEKYNDGFKIAEEDL 608
>TIGR_CMR|CBU_0305 [details] [associations]
symbol:CBU_0305 "ATP-dependent DNA helicase RecG"
species:227377 "Coxiella burnetii RSA 493" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR004365 InterPro:IPR004609 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF01336 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006281 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006310 GO:GO:0004003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000036617 KO:K03655 OMA:DRTRITP ProtClustDB:PRK10917
TIGRFAMs:TIGR00643 HSSP:Q9WY48 RefSeq:NP_819348.1
ProteinModelPortal:Q83EL4 PRIDE:Q83EL4 GeneID:1208187
KEGG:cbu:CBU_0305 PATRIC:17929305
BioCyc:CBUR227377:GJ7S-312-MONOMER Uniprot:Q83EL4
Length = 704
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 148/431 (34%), Positives = 238/431 (55%)
Query: 42 RRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNPAIAEFAAQFPYEPTPDQKKAF 98
+ ++ ++A +++V + L RL + P P KN + +E T QK+
Sbjct: 231 KHPSQQRLAFEELVAQQLGLQQWRLLIRTQPAPILIKNNWQEKLKRALTFELTSAQKRVI 290
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++ +DL++ + PM RL+ GDVG GKT VA AI V G Q+ ++APT +LA+QH+ V
Sbjct: 291 GEINQDLSKPK-PMLRLLQGDVGSGKTIVAAMAILKAVENGYQSAIMAPTELLAEQHYQV 349
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
FS I+VG L+ + + +E+ L I G L++I+GTH+L + V + L +V
Sbjct: 350 FQRWFSPL-GIRVGWLAGSLTPSAREKTLQEIASGQLSVIIGTHALFQAAVTFQQLAFIV 408
Query: 219 VDEEQRFGVKQ----KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER 274
+DE+ RFGV Q KEK A+ L ++ATPIPRTL + D S+I PP R
Sbjct: 409 IDEQHRFGVHQRLALKEK-ATPNYHPHQLIMTATPIPRTLAMTAYADLDFSIIDEQPPGR 467
Query: 275 LPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLE----EPMD--F--LQQAFP 325
PI T L + S+ +KVI IK ++G QV++V I E E + F LQQ+F
Sbjct: 468 KPITTVLISNSRRDKVIERIKKNCEQGKQVYWVCTLITDSEVLQCETAEATFKKLQQSFT 527
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
+ + + HG+ + + M F G I +L+ T ++E G+D+ NA+ +++++ ++ GLA
Sbjct: 528 NLSVGLIHGRLTKEEKDVVMGAFKNGDIDLLVATTVIEVGVDVPNASLMVIENSERLGLA 587
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRG 445
Q++QLRGRVGR +++++ L Y + LS GF +A+KD+ +RG
Sbjct: 588 QIHQLRGRVGRGEQKSYCVLLYQEP--LSKNARARLTLLRDTQ---DGFLVAQKDLELRG 642
Query: 446 FGTIFGEQQTG 456
G + G +Q+G
Sbjct: 643 PGELLGARQSG 653
>TIGR_CMR|DET_1268 [details] [associations]
symbol:DET_1268 "ATP-dependent DNA helicase RecG"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR004609 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006281
GO:GO:0003676 GO:GO:0006310 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0004003 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1200
KO:K03655 ProtClustDB:PRK10917 TIGRFAMs:TIGR00643
HOGENOM:HOG000036619 OMA:ETYWVKH RefSeq:YP_181980.1
ProteinModelPortal:Q3Z719 STRING:Q3Z719 GeneID:3229414
KEGG:det:DET1268 PATRIC:21609563
BioCyc:DETH243164:GJNF-1269-MONOMER Uniprot:Q3Z719
Length = 740
Score = 450 (163.5 bits), Expect = 2.4e-56, Sum P(2) = 2.4e-56
Identities = 100/298 (33%), Positives = 165/298 (55%)
Query: 169 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVK 228
++V L+ ++K+ + IK G ++I +GTH+L+ + + +LGL V+DE+ RFGV+
Sbjct: 394 LRVALMISDMKSSQKDILKEKIKKGEIDIAIGTHALIQKEIRFKSLGLAVIDEQHRFGVE 453
Query: 229 QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTH-LSAFSKE 287
Q+ + S ++ +L ++ATPIPRTL L L G D S+I PP R IKT L +
Sbjct: 454 QRSALRSKGLNPHILIMTATPIPRTLALTLYGELDLSVIDELPPGRQSIKTRWLKPEQRN 513
Query: 288 KVISAIKYELDRGGQVFYVLPRIKGLE---------EPMDFLQQAFPGVDIAIAHGQQYS 338
+ I+ +++ G Q F + P ++ E E + FP +A+ HG+ +
Sbjct: 514 SAYNFIRKQIEAGRQAFIICPLVEESEAIQAKAATAEYETLSSEVFPESKVALLHGRMNA 573
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+ E M+ F +G + IL+ T +VE G+DI NA ++V+ +FGL+QL+Q RGRVGR
Sbjct: 574 AEKESIMKHFNEGKMDILVSTPVVEVGIDIPNATVMLVESADRFGLSQLHQFRGRVGRGT 633
Query: 399 KEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTG 456
++++ + SLL + GF+LAE+D+ +RG G FG +Q+G
Sbjct: 634 EQSYCMFLAENPSLLGQERLSIIESTQ------DGFKLAEEDLRLRGPGEFFGTRQSG 685
Score = 175 (66.7 bits), Expect = 2.4e-56, Sum P(2) = 2.4e-56
Identities = 36/88 (40%), Positives = 55/88 (62%)
Query: 77 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136
PAI F +Q P++ T Q K D++ D++ + PM RL+ G+VG GKT VA+ ++F
Sbjct: 285 PAIDHFISQLPFKLTDAQTKCLADIKADIS-KSVPMSRLLQGEVGSGKTIVAVISLFTAA 343
Query: 137 SAGKQAMVLAPTIVLAKQHFDVVSERFS 164
+ G Q +APT +LA+QHF V+ F+
Sbjct: 344 ANGLQGAFMAPTEILAEQHFKSVTRLFA 371
>UNIPROTKB|Q0C0Q6 [details] [associations]
symbol:HNE_1987 "Putative ATP-dependent DNA helicase recG"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR004365
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01336
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006281
GO:GO:0003676 GO:GO:0006310 GO:GO:0004003 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CP000158 GenomeReviews:CP000158_GR
GO:GO:0006268 eggNOG:COG1200 HOGENOM:HOG000036617 KO:K03655
RefSeq:YP_760687.1 ProteinModelPortal:Q0C0Q6 STRING:Q0C0Q6
GeneID:4288352 KEGG:hne:HNE_1987 PATRIC:32216817 OMA:YLYERDE
ProtClustDB:CLSK2531604 BioCyc:HNEP228405:GI69-2012-MONOMER
Uniprot:Q0C0Q6
Length = 692
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 146/427 (34%), Positives = 220/427 (51%)
Query: 67 KQKRP-PYPKNP--AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 123
+++RP P K P A+ PY PT Q +A D+ D+ R PM RL+ GDVG G
Sbjct: 241 RRQRPAPIIKAPPSAVNRLIDALPYRPTGAQMRAAADISSDVA-RGYPMRRLLQGDVGAG 299
Query: 124 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 183
KT VA A +AG Q+ +APT VLA+Q +D + S L R + A +
Sbjct: 300 KTLVAAFAAVEAAAAGFQSAFMAPTEVLARQQYDTLDALLSPLGYTVAALSGRDRGSA-R 358
Query: 184 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 243
E L + G + I+ GTH+L V + NLGL++VDE+ RFGV + K+A + +L
Sbjct: 359 EATLMGLADGSIQIVAGTHALFQEAVNFRNLGLIIVDEQHRFGVSDRMKLAGKSENPHML 418
Query: 244 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQ 302
+SATPIPRTL A+ G D S++ PP R P++T ++ E VI AI L RG +
Sbjct: 419 VMSATPIPRTLAQAVHGDLDVSILDEKPPGRKPVETRAVPDTRLEDVIEAIGRALKRGER 478
Query: 303 VFYVLPRIKGLEEPMDFLQQ--AFPG---VDIAIAHGQQYSRQLEETMEKFAQGAIKILI 357
F+V PR+ ++ + + A V + HG+ + + + +E F G +IL+
Sbjct: 479 AFWVCPRVDIEDDDSSAVVRHAALEEELHVKAGLVHGRLKASEKDAALEDFRTGRTRILV 538
Query: 358 CTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQX 417
T ++E G+D+ A ++++ + FGLAQL+QLRGRVGR DK + L Y + L D
Sbjct: 539 ATTVIEVGVDVPEATIMVIERAEGFGLAQLHQLRGRVGRGDKPSFCLLLY--RPPLGDTA 596
Query: 418 XXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV 477
GF++AE D +RG G + G +Q G +DL +++
Sbjct: 597 RERLDTLRRTE---DGFEIAEADFRLRGAGDVLGVRQAGMTDYRIIDLAKHAALLEIARK 653
Query: 478 DEHCVIS 484
D V++
Sbjct: 654 DAEAVLT 660
>TIGR_CMR|BA_3993 [details] [associations]
symbol:BA_3993 "ATP-dependent DNA helicase RecG"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0009378 "four-way junction helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR004609
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006281 GO:GO:0003676 GO:GO:0006310
GO:GO:0004003 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K03655
ProtClustDB:PRK10917 TIGRFAMs:TIGR00643 HOGENOM:HOG000036619
OMA:ETYWVKH HSSP:Q9WY48 RefSeq:NP_846235.1 RefSeq:YP_022668.1
RefSeq:YP_029957.1 ProteinModelPortal:Q81WI3 DNASU:1086614
EnsemblBacteria:EBBACT00000008516 EnsemblBacteria:EBBACT00000016998
EnsemblBacteria:EBBACT00000021314 GeneID:1086614 GeneID:2819857
GeneID:2849256 KEGG:ban:BA_3993 KEGG:bar:GBAA_3993 KEGG:bat:BAS3706
BioCyc:BANT260799:GJAJ-3764-MONOMER
BioCyc:BANT261594:GJ7F-3881-MONOMER Uniprot:Q81WI3
Length = 682
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 129/388 (33%), Positives = 220/388 (56%)
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ EF P+ T Q++ ++ +D+T M+RL+ GDVG GKT VA ++ A
Sbjct: 246 LQEFIDALPFPLTGAQRRVVDEIMKDMTSPYR-MNRLLQGDVGSGKTVVAAIGLYAAKLA 304
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
Q ++ PT +LA+QH+ ++E FS + +KV LL+ + E L ++ G ++I+
Sbjct: 305 HYQGALMVPTEILAEQHYQSLAETFSHF-GMKVELLTSSVKGVRRREILAKLEQGEIDIL 363
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH+L+ V+++ LGL++ DE+ RFGV Q+ + S DVL ++ATPIPRTL +
Sbjct: 364 VGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAITA 423
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEE-- 315
G D S+I P R I+T+ + ++V+ ++ E+++G Q + + P I+ E+
Sbjct: 424 FGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVEKEINKGRQAYVICPLIEESEKLD 483
Query: 316 ---PMDF---LQQAFPG-VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368
+D L + G + + HG+ S++ EE M +F++ ++IL+ T +VE G+++
Sbjct: 484 VQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNV 543
Query: 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXX 428
NA +++ D ++FGL+QL+QLRGRVGR ++++ L KS +
Sbjct: 544 PNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPKSETGKERMRIMTET---- 599
Query: 429 XXGQGFQLAEKDMGIRGFGTIFGEQQTG 456
GF L+EKD+ +RG G FG +Q+G
Sbjct: 600 --NDGFVLSEKDLELRGPGDFFGSKQSG 625
>TIGR_CMR|NSE_0690 [details] [associations]
symbol:NSE_0690 "ATP-dependent DNA helicase RecG"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0008026 eggNOG:COG1200
HOGENOM:HOG000036617 KO:K03655 RefSeq:YP_506567.1
ProteinModelPortal:Q2GD79 STRING:Q2GD79 GeneID:3931634
KEGG:nse:NSE_0690 PATRIC:22681399 OMA:ATHAILA
ProtClustDB:CLSK2528120 BioCyc:NSEN222891:GHFU-703-MONOMER
Uniprot:Q2GD79
Length = 675
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 146/426 (34%), Positives = 227/426 (53%)
Query: 61 LYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGD 119
L+ L QK+ P + I A ++ P+ T Q++ + L ++ M L+ GD
Sbjct: 229 LHTQVLNQKKEPIKGDGRITALLRSRLPFSLTEGQEEVIKKIYA-LQGQDVRMVALLQGD 287
Query: 120 VGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQS 179
VG GKT V + A+ V GKQ ++L+PTIVLAKQHF+V+ + P++K LL+ +
Sbjct: 288 VGSGKTLVVIFAMLNAVEVGKQVVLLSPTIVLAKQHFEVLQKLL---PELKPVLLTGEKI 344
Query: 180 KAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKIS 239
+E+ L I+ G +IV TH++L +++ +LGLLV+DE+ RFG Q+ K+
Sbjct: 345 ACSREQFLQDIRSGDAKVIVATHAILAVGILFFDLGLLVIDEQHRFGANQRTKLIRENPG 404
Query: 240 VDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELD 298
D++ +SATPIPRT+ L G + P R + T SK K+I IK L
Sbjct: 405 ADLVLVSATPIPRTIGQVLFGSITLLNLREKPKSRPVVTTSTVTKSKIAKLIERIKVILG 464
Query: 299 RGGQVFYVLPRIKGLE--------EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ 350
+G +VF++ P I+ E E L++ F ++ HG ++++EE + F
Sbjct: 465 KGSKVFWICPVIEESENLKVISVTERFRLLKKHFAD-EVDCVHGVLSAQKMEEKLTAFRN 523
Query: 351 GAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 410
G KIL+ T +VE G+DI + + I+++D FGLAQL+QLRGRVGR +K++ L Y +
Sbjct: 524 GKTKILLATTVVEVGVDIPDVDVIVIEDADHFGLAQLHQLRGRVGRGNKKSFCILLYDSQ 583
Query: 411 SLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFE-M 469
+ + GF +AE+D +RG G IFG +Q+G +D FE
Sbjct: 584 KITEN----GKKRLKILRESSDGFFIAEEDFKLRGVGDIFGVRQSGFYKFKFLDRPFEHS 639
Query: 470 LFESLS 475
F+S S
Sbjct: 640 FFDSAS 645
>TIGR_CMR|ECH_0062 [details] [associations]
symbol:ECH_0062 "ATP-dependent DNA helicase RecG"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003676
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1200 HOGENOM:HOG000036617 KO:K03655 RefSeq:YP_506893.1
ProteinModelPortal:Q2GI40 STRING:Q2GI40 GeneID:3928041
KEGG:ech:ECH_0062 PATRIC:20575691 OMA:YNLMGKF
ProtClustDB:CLSK749554 BioCyc:ECHA205920:GJNR-62-MONOMER
Uniprot:Q2GI40
Length = 679
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 134/382 (35%), Positives = 215/382 (56%)
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
+ P++ T QK+ + + E M +L+ GDVG GKT VAL AI V+ G Q
Sbjct: 255 KLPFKLTEGQKEVISQITKSQAS-ENRMVKLLIGDVGSGKTVVALFAILNVIENGGQVAF 313
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM-IKHGHLNIIVGTHS 203
+APT +LA+QH+ + S + V LL+ SK K++++ ++ G N+++GTH+
Sbjct: 314 MAPTEILAEQHYRWIRAILSDI-SVDVELLT---SKVRKKQNIKKKLQLGECNVVIGTHA 369
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
L V +NNL L+++DE+QRFGV Q+ ++ + DVL ++ATPIPRTL + G D
Sbjct: 370 LFQDGVDFNNLNLIIIDEQQRFGVLQRMRLINKSNMADVLFMTATPIPRTLEQVVYGDID 429
Query: 264 ASLISTPPPERLPIKTHLSAFSKE-KVISAIKYELDRGGQVFYVLPRIKGLE-------E 315
+ P RLPI+T + + +VI+ ++ L G + +++ P I+ E E
Sbjct: 430 CLRLKDKPHNRLPIQTSIVNIERLFEVIAKLQLALQEGNKAYWICPYIEDSELLDIAAAE 489
Query: 316 PMDF-LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 374
F LQ+ F G D+ + H + + +E M F G IK+L+ T ++E G+DI +A I
Sbjct: 490 KRFFTLQEVF-GKDVGLIHSRLPKIEKDEVMMSFYNGNIKLLVATTVIEVGVDIPDATII 548
Query: 375 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGF 434
I+++ +QFGL+QL+QLRGRVGR+DK + L + + +LS GF
Sbjct: 549 IIENAEQFGLSQLHQLRGRVGRSDKSSFCILLHGN--MLSK---IAYKKLCILRKFQDGF 603
Query: 435 QLAEKDMGIRGFGTIFGEQQTG 456
+AE+D+ +RG G + G +Q+G
Sbjct: 604 YIAEQDLLLRGSGDVLGIKQSG 625
>TIGR_CMR|GSU_1326 [details] [associations]
symbol:GSU_1326 "ATP-dependent DNA helicase RecG"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR004609 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006281
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0006310
GO:GO:0004003 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K03655
ProtClustDB:PRK10917 TIGRFAMs:TIGR00643 HOGENOM:HOG000036618
RefSeq:NP_952379.2 GeneID:2688056 KEGG:gsu:GSU1326 PATRIC:22025427
BioCyc:GSUL243231:GH27-1321-MONOMER Uniprot:Q74DJ0
Length = 767
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 128/381 (33%), Positives = 204/381 (53%)
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
P+ T Q++ +++ D+ PM RL+ GDVG GKT VAL A V G Q ++A
Sbjct: 336 PFALTEAQRRVLAEIKADMMAPH-PMHRLVQGDVGCGKTLVALLAALVAVENGYQVAIMA 394
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLL-SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA+QH+ + R+ + + V LL S + KA K L+ + G + I++GTH+++
Sbjct: 395 PTEILAEQHYLNI-HRWCEQLGVTVALLTSSLKGKA-KAGALERVARGEVQIVIGTHAVI 452
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
+V ++ LGL +VDE+ RFGV Q+ + + D+L ++ATPIPRTL + + G S
Sbjct: 453 QDKVEFHRLGLGIVDEQHRFGVLQRGLLRKKGENPDILVMTATPIPRTLAMTVFGDLSLS 512
Query: 266 LISTPPPERLPIKTHLSAFSKEK-VISAIKYELDRGGQVFYVLP--------RIKGLEEP 316
+I PP R P++T + S+ + V I+ E+ G Q + + P +K +
Sbjct: 513 VIDELPPGRTPVETKICTDSRRRQVYGIIRDEVAAGHQAYVIYPLVEESEKSELKAATQM 572
Query: 317 MDFL-QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 375
+ L FP + + + HG+ + E M F I IL+ T ++E G+D+ NA ++
Sbjct: 573 AEHLANDVFPDLRLGVLHGRMKPEEKEAVMRSFKGREIDILVSTTVIEVGIDVPNATVMV 632
Query: 376 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQ 435
++ ++FGL+QL+QLRGRVGR + L D+ LSD GF+
Sbjct: 633 IEHAERFGLSQLHQLRGRVGRGSATSRCILMASDR--LSDDGVKRLRVMESTT---DGFR 687
Query: 436 LAEKDMGIRGFGTIFGEQQTG 456
+AE D+ IRG G G +Q G
Sbjct: 688 IAEADLEIRGPGDFLGTRQAG 708
>UNIPROTKB|P24230 [details] [associations]
symbol:recG "RecG DNA helicase" species:83333 "Escherichia
coli K-12" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=IDA] [GO:0009379 "Holliday junction helicase
complex" evidence=IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR004365 InterPro:IPR004609 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF01336 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006310 GO:GO:0004003 EMBL:L10328
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:M64367
EMBL:X59550 PIR:JH0265 RefSeq:NP_418109.1 RefSeq:YP_491782.1
ProteinModelPortal:P24230 SMR:P24230 DIP:DIP-10653N IntAct:P24230
MINT:MINT-1301344 PRIDE:P24230 EnsemblBacteria:EBESCT00000001039
EnsemblBacteria:EBESCT00000014226 GeneID:12933935 GeneID:948162
KEGG:ecj:Y75_p3522 KEGG:eco:b3652 PATRIC:32122791 EchoBASE:EB0822
EcoGene:EG10829 eggNOG:COG1200 HOGENOM:HOG000036617 KO:K03655
OMA:DRTRITP ProtClustDB:PRK10917 BioCyc:EcoCyc:EG10829-MONOMER
BioCyc:ECOL316407:JW3627-MONOMER Genevestigator:P24230
GO:GO:0009379 TIGRFAMs:TIGR00643 Uniprot:P24230
Length = 693
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 144/472 (30%), Positives = 236/472 (50%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQK--RPPYPKNPAIA-EFA 83
RP +LSD + + + + + +L L L Q+ P N + +
Sbjct: 203 RPPPTLQLSDLETGQHPAQRRLILEELLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLL 262
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A P++PT Q + ++ERD+ + PM RL+ GDVG GKT VA A ++ GKQ
Sbjct: 263 AALPFKPTGAQARVVAEIERDMA-LDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVA 321
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
++APT +LA+QH + F+ I+VG L+ Q + + I G + +IVGTH+
Sbjct: 322 LMAPTELLAEQHANNFRNWFAPL-GIEVGWLAGKQKGKARLAQQEAIASGQVQMIVGTHA 380
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQK----EKIASFKISVDVLTLSATPIPRTLYLALT 259
+ +V +N L L+++DE+ RFGV Q+ EK L ++ATPIPRTL +
Sbjct: 381 IFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAY 440
Query: 260 GFRDASLISTPPPERLPIKT-HLSAFSKEKVISAIKYE-LDRGGQVFYVLPRIK------ 311
D S+I PP R P+ T + + +I + + + G Q ++V I+
Sbjct: 441 ADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVHHACITEGRQAYWVCTLIEESELLE 500
Query: 312 --GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 369
E + L+ A P +++ + HG+ + + M F QG + +L+ T ++E G+D+
Sbjct: 501 AQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVP 560
Query: 370 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXX 429
NA+ +I+++ ++ GLAQL+QLRGRVGR +H L Y K+ LS
Sbjct: 561 NASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLY--KTPLSK---TAQIRLQVLRD 615
Query: 430 XGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEM-LFESLSKVDEH 480
GF +A+KD+ IRG G + G +QTG+ DL + + + ++ H
Sbjct: 616 SNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRLARH 667
>TIGR_CMR|SPO_1681 [details] [associations]
symbol:SPO_1681 "ATP-dependent DNA helicase RecG"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR004609
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006281 GO:GO:0003676 GO:GO:0006310 GO:GO:0004003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000036617 KO:K03655 ProtClustDB:PRK10917
TIGRFAMs:TIGR00643 RefSeq:YP_166920.1 ProteinModelPortal:Q5LST5
GeneID:3193560 KEGG:sil:SPO1681 PATRIC:23376687 OMA:EHPSLCL
Uniprot:Q5LST5
Length = 696
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 128/383 (33%), Positives = 210/383 (54%)
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A PY PT Q +A ++ D+ M+RL+ GDVG GKT VA A+ V AG Q +
Sbjct: 262 ASLPYRPTNAQARAIEEIAADMAA-PARMNRLLQGDVGAGKTLVAFMALLVAVEAGGQGV 320
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
++APT +LA+QH + + ++ + + LL+ AE+ L +K G ++I+VGTH+
Sbjct: 321 MMAPTEILARQHLEGLRP-LAEEAGVVLELLTGRDKGAERRAKLAALKKGDISILVGTHA 379
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+ + V + +L L +VDE+ RFGV+Q+ ++A ++ DVL ++ATPIPR+L LA G D
Sbjct: 380 VFQADVEFADLRLAIVDEQHRFGVRQRMELAEKGMNADVLVMTATPIPRSLALAQYGDMD 439
Query: 264 ASLISTPPPERLPIKTH-LSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE-EPMDFLQ 321
S++ PP R PI+T +S ++VI ++ + G Q ++V P + E + +
Sbjct: 440 VSVLDEKPPGRKPIRTAVISTERMDEVIDHLRRAIAEGRQCYWVCPLVDESEVSDLTAAE 499
Query: 322 QAFP--------GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 373
F GV + + HGQ + + M F G ++L+ T ++E G+++ NA
Sbjct: 500 DRFKRLRAVLGEGV-VGLVHGQMPPAEKDAAMAAFQTGETQVLVATTVIEVGVNVPNATI 558
Query: 374 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQG 433
++++ + FGLAQL+QLRGRVGR + + L Y L++ G
Sbjct: 559 MVIERAEIFGLAQLHQLRGRVGRGEAASTCLLMYQPP--LTEGGRRRLEVLRETE---DG 613
Query: 434 FQLAEKDMGIRGFGTIFGEQQTG 456
F++AE D+ +RG G + G Q+G
Sbjct: 614 FRIAETDLDMRGAGDLIGTAQSG 636
>TIGR_CMR|APH_1298 [details] [associations]
symbol:APH_1298 "ATP-dependent DNA helicase RecG"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1200 HOGENOM:HOG000036617 KO:K03655 OMA:YLYERDE
ProtClustDB:CLSK749554 RefSeq:YP_505812.1 ProteinModelPortal:Q2GII9
STRING:Q2GII9 GeneID:3931022 KEGG:aph:APH_1298 PATRIC:20951392
BioCyc:APHA212042:GHPM-1300-MONOMER Uniprot:Q2GII9
Length = 702
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 135/428 (31%), Positives = 233/428 (54%)
Query: 41 ERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNPAIAEFAAQFPYEPTPDQKKA 97
E R+ KG++A +++ +Y R +R K E + +E T QK A
Sbjct: 234 EVRRIKGRLAYDELMAYHAAVYFARQHGRRKGVALEVKGTNYQEVLKRLGFELTAGQKSA 293
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157
++ R T + M +L+ GDVG GKT VAL A+ V + Q V+ PT +LA+QH
Sbjct: 294 IREITRAQTS-DQQMAKLLQGDVGSGKTVVALFAMLNTVESSGQVAVMVPTEMLAEQHCS 352
Query: 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217
+ ++ + DI + LL+ ++K + H ++ G ++I++GTH+L V ++NL L+
Sbjct: 353 WI-KKLLEGMDICIELLTG-KTKNKNTIHARLLS-GEIHILIGTHALFQESVKFHNLRLV 409
Query: 218 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 277
V+DE+QRFGV Q+ K+ S D+L ++ATPIPRTL L G D + P RLP+
Sbjct: 410 VIDEQQRFGVLQRMKLIEKGDSADILFITATPIPRTLEQILYGNMDRITLKDKPACRLPV 469
Query: 278 KTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKG--------LEEPMDFLQQAFPGVD 328
KT + + + +K + R +++++ P I+G +EE +FL+ F
Sbjct: 470 KTSIVKVCMIDDLCKRLKNMISREHKIYWICPYIEGSEDNDVASVEERFEFLKNMFGNNI 529
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+ ++HG E ++ F G IK+L+ T+I+E G+++ +A I++++ ++FGL+QL+
Sbjct: 530 VGVSHGAMTQIGNESALQAFYAGNIKVLVATSIIEVGINVPDATIIVIENPERFGLSQLH 589
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGT 448
QLRGRVGR ++++ L + S ++ + GF +AE+D+ +RG G
Sbjct: 590 QLRGRVGRGHQQSYCILLHGPVSKIAYRKLSVLRDSH------DGFHIAEQDLILRGGGD 643
Query: 449 IFGEQQTG 456
+ G +Q+G
Sbjct: 644 MLGCRQSG 651
>TIGR_CMR|SO_4364 [details] [associations]
symbol:SO_4364 "ATP-dependent DNA helicase RecG"
species:211586 "Shewanella oneidensis MR-1" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR004365 InterPro:IPR004609 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF01336 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006281 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006310 GO:GO:0004003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000036617 KO:K03655 OMA:DRTRITP ProtClustDB:PRK10917
TIGRFAMs:TIGR00643 HSSP:Q9WY48 RefSeq:NP_719888.2
ProteinModelPortal:Q8E9C0 GeneID:1171966 KEGG:son:SO_4364
PATRIC:23528383 Uniprot:Q8E9C0
Length = 691
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 137/422 (32%), Positives = 222/422 (52%)
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F P++PT Q++ ++ +DL + PM RL+ GDVG GKT VA A + G Q
Sbjct: 259 FLTSLPFKPTGAQQRVVAEIGKDLAQPH-PMMRLVQGDVGSGKTLVAALAALQAIENGYQ 317
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLS-RFQSKAEKEEHLDMIKHGHLNIIVG 200
++APT +LA+QH + F +KVG L+ + + KA + D I+ G I++G
Sbjct: 318 VAMMAPTELLAEQHAANFAAWFEPL-GLKVGWLAGKLKGKARAQSLAD-IESGAAQIVIG 375
Query: 201 THSLLGSRVVYNNLGLLVVDEEQRFGVKQK----EKIASFKISVDVLTLSATPIPRTLYL 256
TH++ +V+++ L L+++DE+ RFGV Q+ EK + L ++ATPIPRTL +
Sbjct: 376 THAIFQQQVIFHKLALIIIDEQHRFGVHQRMGLREKGINQGFHPHQLIMTATPIPRTLAM 435
Query: 257 ALTGFRDASLISTPPPERLPIKTHLSAFSKE-KVISAIKYEL--DRGGQVFYVLPRIK-- 311
D S+I PP R P+ T S+ +V+ ++ + D+ Q ++V I+
Sbjct: 436 TAYADLDTSIIDELPPGRTPVTTVAIPDSRRNEVLERVRNSVITDKR-QAYWVCTLIEES 494
Query: 312 ------GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 365
E+ + L+QA P + I + HG+ S + ++ M F G I +L+ T ++E G
Sbjct: 495 EVLECQAAEDTAEELRQALPELTIGLVHGRMKSAEKQKIMADFKAGTINLLVATTVIEVG 554
Query: 366 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXX 425
+D+ N++ +I+++ ++ GLAQL+QLRGRVGR +H L Y K+ LS
Sbjct: 555 VDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLY--KAPLSQ---TASQRLN 609
Query: 426 XXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEM-LFESLSKVDEHCVIS 484
GF +A+KD+ IRG G + G +QTG DL + L + K+ H +
Sbjct: 610 VLRQSNDGFVIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQALIPHIQKLANHVMSQ 669
Query: 485 VP 486
P
Sbjct: 670 AP 671
>UNIPROTKB|Q9KNM1 [details] [associations]
symbol:VC_2711 "ATP-dependent DNA helicase RecG"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0009378 "four-way junction
helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004365 InterPro:IPR004609 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF01336 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006281 GO:GO:0003676 GO:GO:0006310 GO:GO:0004003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009378
KO:K03655 OMA:DRTRITP ProtClustDB:PRK10917 TIGRFAMs:TIGR00643
HSSP:Q9WY48 PIR:H82041 RefSeq:NP_232338.1 ProteinModelPortal:Q9KNM1
DNASU:2615539 GeneID:2615539 KEGG:vch:VC2711 PATRIC:20084440
Uniprot:Q9KNM1
Length = 692
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 136/403 (33%), Positives = 220/403 (54%)
Query: 71 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130
P P + + AQ P+ PT Q++ ++E DL + PM RL+ GDVG GKT VA
Sbjct: 249 PLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLAKPH-PMMRLVQGDVGSGKTLVAAL 307
Query: 131 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLS-RFQSKAEKEEHLDM 189
A + G Q ++APT +LA+QH + ++ + I+VG L+ + + KA +E L
Sbjct: 308 AAVRAIEHGYQVALMAPTELLAEQHA-LNFAQWLEPMGIQVGWLAGKLKGKA-RETELAR 365
Query: 190 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK----EKIASFKISVDVLTL 245
I G + ++VGTH+L +V +++L L+++DE+ RFGV Q+ EK A L +
Sbjct: 366 IASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQGAYPHQLIM 425
Query: 246 SATPIPRTLYLALTGFRD--ASLISTPPPERLPIKT-HLSAFSKEKVISAIKYE-LDRGG 301
+ATPIPRTL A+T + D S+I PP R PI+T + +++++ I++ L+ G
Sbjct: 426 TATPIPRTL--AMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLNEGK 483
Query: 302 QVFYVLPRIKGLE--------EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAI 353
Q ++V I E E + LQ+ P V I + HG+ + + M+ F +
Sbjct: 484 QAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNEL 543
Query: 354 KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLL 413
+L+ T ++E G+D+ NA+ +I+++ ++ GLAQL+QLRGRVGR +H L + + L
Sbjct: 544 HLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF--HAPL 601
Query: 414 SDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTG 456
S GF +A++D+ IRG G + G +QTG
Sbjct: 602 SK---TAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTG 641
>TIGR_CMR|VC_2711 [details] [associations]
symbol:VC_2711 "ATP-dependent DNA helicase RecG"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0009378 "four-way junction helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR004365
InterPro:IPR004609 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF01336 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003676
GO:GO:0006310 GO:GO:0004003 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0009378 KO:K03655 OMA:DRTRITP ProtClustDB:PRK10917
TIGRFAMs:TIGR00643 HSSP:Q9WY48 PIR:H82041 RefSeq:NP_232338.1
ProteinModelPortal:Q9KNM1 DNASU:2615539 GeneID:2615539
KEGG:vch:VC2711 PATRIC:20084440 Uniprot:Q9KNM1
Length = 692
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 136/403 (33%), Positives = 220/403 (54%)
Query: 71 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130
P P + + AQ P+ PT Q++ ++E DL + PM RL+ GDVG GKT VA
Sbjct: 249 PLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLAKPH-PMMRLVQGDVGSGKTLVAAL 307
Query: 131 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLS-RFQSKAEKEEHLDM 189
A + G Q ++APT +LA+QH + ++ + I+VG L+ + + KA +E L
Sbjct: 308 AAVRAIEHGYQVALMAPTELLAEQHA-LNFAQWLEPMGIQVGWLAGKLKGKA-RETELAR 365
Query: 190 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK----EKIASFKISVDVLTL 245
I G + ++VGTH+L +V +++L L+++DE+ RFGV Q+ EK A L +
Sbjct: 366 IASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQGAYPHQLIM 425
Query: 246 SATPIPRTLYLALTGFRD--ASLISTPPPERLPIKT-HLSAFSKEKVISAIKYE-LDRGG 301
+ATPIPRTL A+T + D S+I PP R PI+T + +++++ I++ L+ G
Sbjct: 426 TATPIPRTL--AMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLNEGK 483
Query: 302 QVFYVLPRIKGLE--------EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAI 353
Q ++V I E E + LQ+ P V I + HG+ + + M+ F +
Sbjct: 484 QAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNEL 543
Query: 354 KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLL 413
+L+ T ++E G+D+ NA+ +I+++ ++ GLAQL+QLRGRVGR +H L + + L
Sbjct: 544 HLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF--HAPL 601
Query: 414 SDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTG 456
S GF +A++D+ IRG G + G +QTG
Sbjct: 602 SK---TAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTG 641
>TAIR|locus:2049541 [details] [associations]
symbol:AT2G01440 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR001650 InterPro:IPR004609 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GO:GO:0006281 GO:GO:0003676
GO:GO:0006310 GO:GO:0004003 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K03655
TIGRFAMs:TIGR00643 IPI:IPI00538003 RefSeq:NP_178253.3
UniGene:At.69110 ProteinModelPortal:F4INA9 SMR:F4INA9 PRIDE:F4INA9
EnsemblPlants:AT2G01440.1 GeneID:814672 KEGG:ath:AT2G01440
OMA:MIIYNSE Uniprot:F4INA9
Length = 973
Score = 313 (115.2 bits), Expect = 9.8e-46, Sum P(2) = 9.8e-46
Identities = 75/235 (31%), Positives = 128/235 (54%)
Query: 234 ASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSK---EKVI 290
A ++ VL +SATPIPR+L LAL G + I+ P R+P++TH+ ++ ++V
Sbjct: 692 ADLSMAPHVLAMSATPIPRSLALALYGDISLTQITGMPLGRIPVETHIFEGNETGIKEVY 751
Query: 291 SAIKYELDRGGQVFYV---------LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQL 341
S + +L GG+V+ V LP+++ ++ + + FP + + HG+ S
Sbjct: 752 SMMLEDLKSGGRVYVVYPVIDQSEQLPQLRAASAELEIVTKKFPKYNCGLLHGRMKSDDK 811
Query: 342 EETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA 401
EE + KF G +IL+ T ++E G+D+ +A+ ++V + ++FG+AQL+QLRGRVGR +++
Sbjct: 812 EEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGTRKS 871
Query: 402 HAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTG 456
K LL GF LA D+ +RG G + G++Q+G
Sbjct: 872 --------KCLLVGSSTNSLKRLNMLGKSSDGFYLANIDLLLRGPGDLLGKKQSG 918
Score = 250 (93.1 bits), Expect = 9.8e-46, Sum P(2) = 9.8e-46
Identities = 60/171 (35%), Positives = 92/171 (53%)
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F PY TP Q A ++ DL +R PM+RL+ GDVG GKT VA A V+ +G Q
Sbjct: 514 FLKALPYSLTPSQLSAVSEIIWDL-KRPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQ 572
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIK----VGLLSRFQSKAEKEEHLDMIKHGHLNI 197
A +APT +LA QH++ + + +GLL+ + ++ G ++
Sbjct: 573 AAFMAPTELLAIQHYEQCRDLLENMEGVSSKPTIGLLTGSTPAKQSRMIRQDLQSGAISF 632
Query: 198 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 248
I+GTHSL+ ++ Y+ L + VVDE+QRFGV Q+ K S +++ S +
Sbjct: 633 IIGTHSLIAEKIEYSALRIAVVDEQQRFGVIQRGKFNSKLYGTSMISKSGS 683
>UNIPROTKB|P64322 [details] [associations]
symbol:recG "ATP-dependent DNA helicase RecG" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 InterPro:IPR004609
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006310 GO:GO:0004003 EMBL:BX842581
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1200
KO:K03655 ProtClustDB:PRK10917 TIGRFAMs:TIGR00643 PIR:B70672
RefSeq:NP_217489.1 RefSeq:NP_337563.1 RefSeq:YP_006516428.1
ProteinModelPortal:P64322 SMR:P64322 PhosSite:P12061602
EnsemblBacteria:EBMYCT00000001827 EnsemblBacteria:EBMYCT00000069739
GeneID:13317769 GeneID:887439 GeneID:925224 KEGG:mtc:MT3051
KEGG:mtu:Rv2973c KEGG:mtv:RVBD_2973c PATRIC:18128470
TubercuList:Rv2973c HOGENOM:HOG000036618 OMA:PHVLTMT Uniprot:P64322
Length = 737
Score = 321 (118.1 bits), Expect = 5.3e-40, Sum P(2) = 5.3e-40
Identities = 92/257 (35%), Positives = 139/257 (54%)
Query: 73 YPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 132
+ N AE + P+E T Q++ LDV D P++RL+ G+VG GKT VA+ A+
Sbjct: 271 WKSNGLAAELLRRLPFELTAGQREV-LDVLSDGLAANRPLNRLLQGEVGSGKTIVAVLAM 329
Query: 133 FCVVSAGKQAMVLAPTIVLAKQHF----DVVS------ERFSKYPDIKVGLLSRFQSKAE 182
+V AG Q +LAPT VLA QH DV+ + +V LL+ + +
Sbjct: 330 LQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRVALLTGSMTAGQ 389
Query: 183 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKI---ASFKIS 239
K++ I G + I++GTH+LL V ++NLG++VVDE+ RFGV+Q++++ A I+
Sbjct: 390 KKQVRAEIASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRDQLRAKAPAGIT 449
Query: 240 VDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVI------SAI 293
+L ++ATPIPRT+ L + G + S + P R PI T++ F K+K I
Sbjct: 450 PHLLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNV-IFVKDKPAWLDRAWRRI 508
Query: 294 KYELDRGGQVFYVLPRI 310
E G Q + V PRI
Sbjct: 509 IEEAAAGRQAYVVAPRI 525
Score = 182 (69.1 bits), Expect = 5.3e-40, Sum P(2) = 5.3e-40
Identities = 39/128 (30%), Positives = 65/128 (50%)
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+A+ HG+ + + M F G + +L+CT ++E G+D+ NA ++V D +FG++QL+
Sbjct: 560 LALMHGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQLH 619
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGT 448
QLRGR+GR + + L S + GF LA+ D+ R G
Sbjct: 620 QLRGRIGRGEHPSVCLL----ASWVPPDTPAGQRLRAVAGTM-DGFALADLDLKERKEGD 674
Query: 449 IFGEQQTG 456
+ G Q+G
Sbjct: 675 VLGRNQSG 682
>TIGR_CMR|CJE_0514 [details] [associations]
symbol:CJE_0514 "ATP-dependent DNA helicase RecG"
species:195099 "Campylobacter jejuni RM1221" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000025
GenomeReviews:CP000025_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1200 KO:K03655
ProtClustDB:PRK10917 HOGENOM:HOG000036619 RefSeq:YP_178532.1
ProteinModelPortal:Q5HW03 STRING:Q5HW03 GeneID:3231275
KEGG:cjr:CJE0514 PATRIC:20042740 OMA:QALLYRE
BioCyc:CJEJ195099:GJC0-524-MONOMER Uniprot:Q5HW03
Length = 607
Score = 399 (145.5 bits), Expect = 5.8e-35, P = 5.8e-35
Identities = 133/428 (31%), Positives = 215/428 (50%)
Query: 51 IQKMVVDL--MELY--LHRLKQKRPPYPKNPA----IAEFAAQFPYEPTPDQKKAFLDVE 102
+Q DL +E+Y L RLK K+ + + IA + P+ T DQ A D+E
Sbjct: 179 LQNFSKDLKYIEIYNFLKRLKAKKTHFKAHQINVFNIANWLKDLPFSLTKDQLNALKDIE 238
Query: 103 RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSER 162
+DL +E R+I GDVG GKT V L A V KQA+++APT +LA Q ++ +++
Sbjct: 239 KDLHSKEARR-RVIMGDVGCGKTLVLLGAALMVYP--KQAILMAPTSILAHQLYEE-AKK 294
Query: 163 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEE 222
F PD + +L K EK+ ++ K N+I+GTH+L+ + +N L+++DE+
Sbjct: 295 F--LPDF-MNILFIKGGKKEKDLEQNIQK---ANLIIGTHALI--HLESHNAVLVMIDEQ 346
Query: 223 QRFGVKQKEKIASF---KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKT 279
RFG Q+EKI S + + + SATPIPRTL + + + S I P ++ I T
Sbjct: 347 HRFGSAQREKIYSLSKQEFAPHFIQFSATPIPRTLSMIQSELLNFSFIKQMPFKK-DITT 405
Query: 280 H-LSAFSKEKVISAIKYELDRGGQVFYVLPRIKG--------LEEPMDFLQQAFPGVDIA 330
+ + K+ IK E+ + Q+ + P + LE+ ++ Q + V
Sbjct: 406 YCIQNEDFSKLSEKIKEEIAKNHQIIIIYPLVSASDNIPYLSLEQAKEYWQSHYEKV--F 463
Query: 331 IAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 390
+ HG+ +Q +E +E+F IL+ T +VE G+ + + I++ ++ GLA L+QL
Sbjct: 464 VTHGKD--KQKDEILERFRDEG-NILLSTTVVEVGISLPRLSMIVIVGAERLGLATLHQL 520
Query: 391 RGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIF 450
RGRVGR ++ YL+ K + S GF++AE D+ R G +
Sbjct: 521 RGRVGRVGLKSTCYLYTKLKEIPSRLKEFASTL--------DGFKIAELDLKNRLSGDLL 572
Query: 451 -GEQQTGD 457
G Q G+
Sbjct: 573 DGFMQHGN 580
>UNIPROTKB|P17888 [details] [associations]
symbol:priA species:83333 "Escherichia coli K-12"
[GO:0006261 "DNA-dependent DNA replication" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IMP] [GO:0010332 "response
to gamma radiation" evidence=IMP] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0046677 "response to antibiotic"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IEA] [GO:0006260
"DNA replication" evidence=IMP] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006276 "plasmid maintenance"
evidence=IMP] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0006270 "DNA replication initiation"
evidence=IMP] [GO:0006268 "DNA unwinding involved in replication"
evidence=IDA] InterPro:IPR001650 InterPro:IPR005259
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0046677 GO:GO:0010332 GO:GO:0006270
GO:GO:0006310 GO:GO:0006302 EMBL:L19201 GO:GO:0006276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
EMBL:M33293 GO:GO:0030894 GO:GO:0006269 GO:GO:0006268 EMBL:D00616
PIR:S40878 RefSeq:NP_418370.1 RefSeq:YP_491516.1 PDB:2D7E PDB:2D7G
PDB:2D7H PDB:2DWL PDB:2DWM PDB:2DWN PDBsum:2D7E PDBsum:2D7G
PDBsum:2D7H PDBsum:2DWL PDBsum:2DWM PDBsum:2DWN
ProteinModelPortal:P17888 SMR:P17888 DIP:DIP-10562N IntAct:P17888
MINT:MINT-1274231 EnsemblBacteria:EBESCT00000004327
EnsemblBacteria:EBESCT00000015979 GeneID:12933657 GeneID:948426
KEGG:ecj:Y75_p3252 KEGG:eco:b3935 PATRIC:32123387 EchoBASE:EB0756
EcoGene:EG10763 eggNOG:COG1198 HOGENOM:HOG000037413 KO:K04066
OMA:ERQTMQL ProtClustDB:PRK05580 BioCyc:EcoCyc:EG10763-MONOMER
BioCyc:ECOL316407:JW3906-MONOMER BioCyc:MetaCyc:EG10763-MONOMER
EvolutionaryTrace:P17888 Genevestigator:P17888 TIGRFAMs:TIGR00595
Uniprot:P17888
Length = 732
Score = 148 (57.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 43/117 (36%), Positives = 63/117 (53%)
Query: 115 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 174
L+ G G GKTEV L + V++ GKQA+V+ P I L Q ERF+ P V +L
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERFNA-P---VEVL 276
Query: 175 SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE 231
+ +E+ K+G I++GT S L + + NLG++V+DEE KQ+E
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALFTP--FKNLGVIVIDEEHDSSYKQQE 331
Score = 94 (38.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 37/124 (29%), Positives = 57/124 (45%)
Query: 305 YVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQ--LEETMEKFAQGAIKILICTNIV 362
+++P G E+ L FPGV I+ SR+ LE+ + + +G +ILI T ++
Sbjct: 483 HLVPVGLGTEQLEQTLAPLFPGVPISRIDRDTTSRKGALEQQLAEVHRGGARILIGTQML 542
Query: 363 ESGLDIQNANTIIVQDVQQ--FG--------LAQLY-QLRGRVGRADKEAHAYL--FYPD 409
G + + + DV F AQLY Q+ GR GRA K+ L +P+
Sbjct: 543 AKGHHFPDVTLVALLDVDGALFSADFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTHHPE 602
Query: 410 KSLL 413
LL
Sbjct: 603 HPLL 606
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 179 (68.1 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 95/347 (27%), Positives = 157/347 (45%)
Query: 90 PTPDQKKAF-LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL--A 146
PTP QK+A L +E + P G GKT L + + GK+A VL
Sbjct: 25 PTPIQKEAIPLILEGHNLVGQAP--------TGTGKTAAYLLPVLQRIQRGKKAQVLIVT 76
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL- 205
PT LA Q D V+ + KY +KV L+ + +A E + ++ G + +IVGT +
Sbjct: 77 PTRELALQVADEVA-KLGKY--LKVRALAVYGGQAI-ERQIRGLRQG-VEVIVGTPGRIL 131
Query: 206 ---GSRVV-YNNLGLLVVDEEQRF---G-VKQKEKIASFKIS-VDVLTLSAT-PIP-RTL 254
G + + ++++DE G + E I + + L SAT P P +T+
Sbjct: 132 DHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPIKTI 191
Query: 255 YLA-LTGFRDASLIS---TPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFY-VLP 308
L G++ L+ T P R + L K E ++S + EL VF
Sbjct: 192 IKKFLGGYKTVKLVGREKTVPAIR-QVYYELPETEKIEGLVSILNSELPIQAIVFCRTKK 250
Query: 309 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368
R+ + E ++F A G+ HG R+ +T++ F G ++L+ T++ GLDI
Sbjct: 251 RVDEVVEQLNFRGYAAKGL-----HGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDI 305
Query: 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLF--YPDKSLL 413
+ + +I D+ Q + ++++ GR GRA +E A Y ++ LL
Sbjct: 306 PDVSHVINFDIPQNPESYIHRI-GRTGRAGREGKAITLINYRERKLL 351
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 179 (68.1 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 95/347 (27%), Positives = 157/347 (45%)
Query: 90 PTPDQKKAF-LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL--A 146
PTP QK+A L +E + P G GKT L + + GK+A VL
Sbjct: 25 PTPIQKEAIPLILEGHNLVGQAP--------TGTGKTAAYLLPVLQRIQRGKKAQVLIVT 76
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL- 205
PT LA Q D V+ + KY +KV L+ + +A E + ++ G + +IVGT +
Sbjct: 77 PTRELALQVADEVA-KLGKY--LKVRALAVYGGQAI-ERQIRGLRQG-VEVIVGTPGRIL 131
Query: 206 ---GSRVV-YNNLGLLVVDEEQRF---G-VKQKEKIASFKIS-VDVLTLSAT-PIP-RTL 254
G + + ++++DE G + E I + + L SAT P P +T+
Sbjct: 132 DHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPIKTI 191
Query: 255 YLA-LTGFRDASLIS---TPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFY-VLP 308
L G++ L+ T P R + L K E ++S + EL VF
Sbjct: 192 IKKFLGGYKTVKLVGREKTVPAIR-QVYYELPETEKIEGLVSILNSELPIQAIVFCRTKK 250
Query: 309 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368
R+ + E ++F A G+ HG R+ +T++ F G ++L+ T++ GLDI
Sbjct: 251 RVDEVVEQLNFRGYAAKGL-----HGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDI 305
Query: 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLF--YPDKSLL 413
+ + +I D+ Q + ++++ GR GRA +E A Y ++ LL
Sbjct: 306 PDVSHVINFDIPQNPESYIHRI-GRTGRAGREGKAITLINYRERKLL 351
>TIGR_CMR|BA_4006 [details] [associations]
symbol:BA_4006 "primosomal protein N`" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003678 "DNA helicase activity" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] InterPro:IPR001650 InterPro:IPR005259
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006260
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K04066 ProtClustDB:PRK05580 TIGRFAMs:TIGR00595
HOGENOM:HOG000037414 RefSeq:NP_846248.1 RefSeq:YP_020647.1
RefSeq:YP_029970.1 ProteinModelPortal:Q81WH0
EnsemblBacteria:EBBACT00000009040 EnsemblBacteria:EBBACT00000018297
EnsemblBacteria:EBBACT00000023629 GeneID:1086752 GeneID:2816205
GeneID:2852978 KEGG:ban:BA_4006 KEGG:bar:GBAA_4006 KEGG:bat:BAS3719
OMA:TRKKGAH BioCyc:BANT260799:GJAJ-3777-MONOMER
BioCyc:BANT261594:GJ7F-3894-MONOMER Uniprot:Q81WH0
Length = 801
Score = 178 (67.7 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 51/158 (32%), Positives = 78/158 (49%)
Query: 75 KNPAIAE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133
+NP E F P+ T +QK+ + +T ET L+ G G GKTEV L++I
Sbjct: 249 RNPYDDEDFEQTKPFPLTEEQKQVITPILSSITN-ETYNPFLLYGVTGSGKTEVYLQSIA 307
Query: 134 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 193
V+ GK+A+VL P I L Q D RF +V +L S EK + I
Sbjct: 308 AVLEKGKEAIVLVPEIALTPQMVDRFKGRFGS----QVAVLHSALSVGEKYDEWRKILRK 363
Query: 194 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE 231
+ ++VG S + + + NLG++++DEE KQ++
Sbjct: 364 EVKVVVGARSAVFAP--FENLGIIIIDEEHESSYKQED 399
Score = 43 (20.2 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 342 EETMEKFAQGAIKILICTNIVESGLDIQNANTI--IVQDVQ----QFGLAQ-LYQLRGRV 394
E+ ++ F + IL+ T ++ GLD + + D F ++ YQL +V
Sbjct: 593 EKLLKAFGEEKADILLGTQMIAKGLDFPKVTLVGVLTADTMLHLPDFRASEKTYQLLTQV 652
Query: 395 -GRADK 399
GRA +
Sbjct: 653 SGRAGR 658
Score = 41 (19.5 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 474 LSKVDEHCVISVPYKSVQIDININPRL 500
L V+EH + K +QI I+ NP +
Sbjct: 774 LKMVNEHYQAEMQ-KELQISIDFNPTM 799
Score = 41 (19.5 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 22/101 (21%), Positives = 45/101 (44%)
Query: 500 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 559
LP E I P E K + D++ + RQY PY +L+ + +
Sbjct: 661 LPGEVIIQTYTPEHYSIELAKNQQYDVFFDQEMQMRRTRQY--PPYYYVVLVTVSHPELL 718
Query: 560 AADIGITKIYASGKMVG-MKTNMNKKVFKMMIDSMTSEVHR 599
A + +T+ K+VG ++++ +++ M++ + S + R
Sbjct: 719 KA-VQVTE-----KIVGHLRSHCSQQT--MVLGPVASAIPR 751
>FB|FBgn0036754 [details] [associations]
symbol:CG5589 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00550000074863 KO:K14779 OMA:NVMKQSG
RefSeq:NP_649009.1 ProteinModelPortal:Q9VVK8 SMR:Q9VVK8
STRING:Q9VVK8 PRIDE:Q9VVK8 EnsemblMetazoa:FBtr0075170 GeneID:39979
KEGG:dme:Dmel_CG5589 UCSC:CG5589-RA FlyBase:FBgn0036754
InParanoid:Q9VVK8 OrthoDB:EOG4QBZMN PhylomeDB:Q9VVK8
GenomeRNAi:39979 NextBio:816380 Bgee:Q9VVK8 Uniprot:Q9VVK8
Length = 594
Score = 167 (63.8 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 88/346 (25%), Positives = 158/346 (45%)
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVL 145
PTP Q +A L V L +R M C G GKT L I + A G +A+VL
Sbjct: 142 PTPIQMQA-LPV---LLQRRALM---ACAPTGSGKTLAFLTPIINGLRAHKTTGLRALVL 194
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS-- 203
APT LA+Q + +E ++ ++ +S+ S+A K++H K + +I+V T +
Sbjct: 195 APTRELAQQIYRECAE-LTRETGLRTHFISKV-SEA-KQKHGAECKQRY-DILVSTPNRV 250
Query: 204 --LLGSR---VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVD-VLTLSATPIPRTLYLA 257
LL + +++ V+DE R +E +FK +D + + P + +
Sbjct: 251 RFLLQQEPPLLDLSHVEWFVLDEADRL---MEEGQNNFKEQLDDIYAACSNPTKCVAFFS 307
Query: 258 LT---GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK-GL 313
T +L R+ I SA E V + + GG++ + ++ GL
Sbjct: 308 ATYTVPVAKWALRHLKNLVRITIGVQNSA--TETVQQELLFVGSEGGKLVAIRDLVRQGL 365
Query: 314 EEP-MDFLQ------QAFP-----GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI 361
+ P + F+Q Q F G+++ + H ++ Q + ++ F +G+I +LICT +
Sbjct: 366 QPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLICTEL 425
Query: 362 VESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 407
+ G+D + N +I D ++ ++++ GR GRA + A F+
Sbjct: 426 MGRGIDFKGVNLVINYDFPPTTISYIHRI-GRTGRAGRPGRAITFF 470
>UNIPROTKB|Q9KNQ3 [details] [associations]
symbol:VC_2678 "Primosomal protein N`" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISS] [GO:0032508 "DNA duplex unwinding"
evidence=ISS] InterPro:IPR001650 InterPro:IPR005259
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0008026 GO:GO:0006269 KO:K04066
ProtClustDB:PRK05580 TIGRFAMs:TIGR00595 OMA:RMTVHQR PIR:A82047
RefSeq:NP_232306.1 ProteinModelPortal:Q9KNQ3 DNASU:2615506
GeneID:2615506 KEGG:vch:VC2678 PATRIC:20084374 Uniprot:Q9KNQ3
Length = 734
Score = 143 (55.4 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 58/213 (27%), Positives = 96/213 (45%)
Query: 115 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 174
L+ G G GKTEV L I V++ G+QA+VL P I L Q + +RF+ + V ++
Sbjct: 222 LLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIGLTPQTINRFRQRFN----VPVEVM 277
Query: 175 SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEK-- 232
+ E+ + I++GT S L + LG+++VDEE KQ++
Sbjct: 278 HSALNDTERLNAWLAARDKVAGIVIGTRSAL--LTPFAKLGIIIVDEEHDSSYKQQDSLR 335
Query: 233 -----IASFKISVDVLTL---SATPIPRTLYLALTGFRDASLISTPPPERLPIKTH---- 280
+A + ++ + + SATP TL+ AL+G ++ LP + H
Sbjct: 336 YHARDVAVMRAHLENIPIVLGSATPALETLHNALSGKYHHLQLTQRAGNALPTRNHALDV 395
Query: 281 ----LSAFSKEKVISAIKYELDRGGQVFYVLPR 309
L + +I+ ++ L G QV L R
Sbjct: 396 KGLYLESGLSAPLIAEMRRHLSAGNQVMLFLNR 428
Score = 70 (29.7 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 27/86 (31%), Positives = 39/86 (45%)
Query: 341 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ------QFG----LAQLY-Q 389
LE + +G +ILI T ++ G + + + DV F LAQL+ Q
Sbjct: 522 LESALTAIRKGEYQILIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQ 581
Query: 390 LRGRVGRADKEAHAYL--FYPDKSLL 413
+ GR GRA K L +P+ SLL
Sbjct: 582 VAGRAGRASKPGEVVLQTHHPEHSLL 607
>TIGR_CMR|VC_2678 [details] [associations]
symbol:VC_2678 "primosomal protein N`" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005259 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0008026 GO:GO:0006269 KO:K04066 ProtClustDB:PRK05580
TIGRFAMs:TIGR00595 OMA:RMTVHQR PIR:A82047 RefSeq:NP_232306.1
ProteinModelPortal:Q9KNQ3 DNASU:2615506 GeneID:2615506
KEGG:vch:VC2678 PATRIC:20084374 Uniprot:Q9KNQ3
Length = 734
Score = 143 (55.4 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 58/213 (27%), Positives = 96/213 (45%)
Query: 115 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 174
L+ G G GKTEV L I V++ G+QA+VL P I L Q + +RF+ + V ++
Sbjct: 222 LLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIGLTPQTINRFRQRFN----VPVEVM 277
Query: 175 SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEK-- 232
+ E+ + I++GT S L + LG+++VDEE KQ++
Sbjct: 278 HSALNDTERLNAWLAARDKVAGIVIGTRSAL--LTPFAKLGIIIVDEEHDSSYKQQDSLR 335
Query: 233 -----IASFKISVDVLTL---SATPIPRTLYLALTGFRDASLISTPPPERLPIKTH---- 280
+A + ++ + + SATP TL+ AL+G ++ LP + H
Sbjct: 336 YHARDVAVMRAHLENIPIVLGSATPALETLHNALSGKYHHLQLTQRAGNALPTRNHALDV 395
Query: 281 ----LSAFSKEKVISAIKYELDRGGQVFYVLPR 309
L + +I+ ++ L G QV L R
Sbjct: 396 KGLYLESGLSAPLIAEMRRHLSAGNQVMLFLNR 428
Score = 70 (29.7 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 27/86 (31%), Positives = 39/86 (45%)
Query: 341 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ------QFG----LAQLY-Q 389
LE + +G +ILI T ++ G + + + DV F LAQL+ Q
Sbjct: 522 LESALTAIRKGEYQILIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQ 581
Query: 390 LRGRVGRADKEAHAYL--FYPDKSLL 413
+ GR GRA K L +P+ SLL
Sbjct: 582 VAGRAGRASKPGEVVLQTHHPEHSLL 607
>TIGR_CMR|SPO_3127 [details] [associations]
symbol:SPO_3127 "primosomal protein N'" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0003688 "DNA replication origin binding"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005259 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006260
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000037413 KO:K04066 ProtClustDB:PRK05580
TIGRFAMs:TIGR00595 OMA:RNWASIA RefSeq:YP_168330.1
ProteinModelPortal:Q5LNS6 GeneID:3196031 KEGG:sil:SPO3127
PATRIC:23379699 Uniprot:Q5LNS6
Length = 736
Score = 135 (52.6 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 39/120 (32%), Positives = 59/120 (49%)
Query: 115 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP-DIKVGL 173
L+ G G GKTEV L A+ + G+QA+VL P I L + V RF P + G
Sbjct: 226 LLKGVTGAGKTEVYLEAVAEALRMGRQALVLLPEIALTAEFLSRVEARFGARPAEWHSGA 285
Query: 174 LSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKI 233
+ E+ M+ G ++VG S L + + +LGL++VDEE KQ++ +
Sbjct: 286 -----TMTERRRVWRMVGQGAAQLVVGARSALF--LPFRDLGLIIVDEEHDTSYKQEDGV 338
Score = 76 (31.8 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 33/118 (27%), Positives = 51/118 (43%)
Query: 312 GLEEPMDFLQQAFPGVDIAIAHGQQY--SRQLEETMEKFAQGAIKILICTNIVESGLDIQ 369
G+E + +FP IA+ + +R L+E +E A G I+I T +V G +
Sbjct: 498 GIERLAEEATASFPEARIAVLSSDMFGTARALKERIEAIAAGEADIVIGTQLVAKGHNFP 557
Query: 370 NANTIIVQDVQQFGLA-----------QLY-QLRGRVGRADKEAHAYL--FYPDKSLL 413
+ V D GL QL Q+ GR GRA+K A L + P+ ++
Sbjct: 558 LLTLVGVIDAD-LGLQGSDLRAAERTFQLMRQVAGRAGRAEKPGQALLQTYQPEHPVI 614
>TIGR_CMR|SO_4122 [details] [associations]
symbol:SO_4122 "primosomal protein N'" species:211586
"Shewanella oneidensis MR-1" [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0003688 "DNA replication origin binding"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005259 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000037413 KO:K04066
TIGRFAMs:TIGR00595 OMA:RMTVHQR RefSeq:NP_719651.1
ProteinModelPortal:Q8E9Y8 GeneID:1171735 KEGG:son:SO_4122
PATRIC:23527886 ProtClustDB:CLSK907505 Uniprot:Q8E9Y8
Length = 737
Score = 145 (56.1 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 69/249 (27%), Positives = 112/249 (44%)
Query: 81 EFAAQFPYEPTPDQ--KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
++ +Q + TP + K+ + V LT+++ L+ G G GKTEV L + ++
Sbjct: 194 DWRSQLELDETPHRLNKEQAVAVTV-LTQQQGYHCTLLEGITGSGKTEVYLALLEHILKQ 252
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQA++L P I L Q + RF + V +L + ++ E + G II
Sbjct: 253 GKQALILVPEIGLTPQTINRFKRRFR----VNVAVLHSGLTDNQRLEAWRQARCGQAAII 308
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIA----SFKI------SVDVLTLSAT 248
+GT S L + + + G++++DEE KQ+E + + S+ V+ SAT
Sbjct: 309 IGTRSALFTPMAFP--GVIILDEEHDSSFKQQEGVGYHARDLAVMRGHLESIPVVLGSAT 366
Query: 249 PIPRTLYLALTG-FRDASL---ISTPPPER---LPIKT-HLSAFSKEKVISAIKYELDRG 300
P +L AL+G + L R + IK L A +I+ I+ LD G
Sbjct: 367 PSLESLQNALSGRYHHLQLGERAGNAKKVRQGIIDIKNLPLKAGMSAPLINEIRSHLDAG 426
Query: 301 GQVFYVLPR 309
QV L R
Sbjct: 427 NQVLLFLNR 435
Score = 63 (27.2 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 29/104 (27%), Positives = 47/104 (45%)
Query: 312 GLEEPMDFLQQAFPGVDIAIAHGQQYSR---QLEETMEKFAQGAIKILICTNIVESGLDI 368
G E+ + LQ FP + + + +R LE + +G KIL+ T ++ G
Sbjct: 498 GTEQLAEALQLEFPKYPV-VRIDRDTTRLKGSLESHLSAIHKGEYKILVGTQMLAKGHHF 556
Query: 369 QNANTIIVQDV------------QQFGLAQLY-QLRGRVGRADK 399
+ + + DV ++FG QLY Q+ GR GRA+K
Sbjct: 557 PDVTLVGLLDVDGALFSADFRAPERFG--QLYTQVAGRAGRANK 598
>DICTYBASE|DDB_G0274325 [details] [associations]
symbol:ddx52 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
Length = 668
Score = 159 (61.0 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 91/344 (26%), Positives = 154/344 (44%)
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV----ALRAIFCVVSAGKQAMV 144
EP+P Q + + L ERE + G GKT L+A++ G ++++
Sbjct: 221 EPSPIQMQVIPIL---LKEREV----VAIAPTGSGKTASFSIPILQALYEPKKEGFRSVI 273
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
+APT LA+Q + SK ++ +LS+ E+L IK+ +I++ T
Sbjct: 274 IAPTRELAQQIYRNF-RLLSKGKPFRICVLSKNLHNQSTNENL--IKN--YDILITTPLR 328
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVD-VLTLSATP-IPRTLYLALTGFR 262
L + N L L V E F K +F+ VD V+T P + L+ A +
Sbjct: 329 LVYLIKENLLSLNKV-EYLVFDEADKLFDKNFQEQVDIVVTACQNPKLKICLFSATMNQQ 387
Query: 263 DASL---ISTPPPERLPIKTHLSAFS-KEKVISAIKYELDRGGQVFYVLPRI-KGLEEPM 317
L I P + + + + +A + +K+I K E G++ V I KGLE P+
Sbjct: 388 VEELGHSIMKNPIKIIIGEQNAAAITVDQKLIYVGKEE----GKLLAVRQLIQKGLEPPI 443
Query: 318 -----------DFLQQA-FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 365
D Q+ F G+++ + H ++ Q + ++KF G I +LICT ++ G
Sbjct: 444 LIFTQSKERAHDLFQELIFDGINVDVIHSERTQFQRDTIVKKFRMGKIWVLICTELMARG 503
Query: 366 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPD 409
+D + N +I D + ++++ GR GRA + AY Y D
Sbjct: 504 MDFKGVNFVINFDFPHTLASYIHRI-GRTGRAGRPGVAYTLYTD 546
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 156 (60.0 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 78/312 (25%), Positives = 134/312 (42%)
Query: 118 GDVGFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 174
G G GKT + ++ + QA+VL PT LA Q + +IKV L
Sbjct: 48 GKTGSGKTAAFGLGVLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTL 107
Query: 175 SRFQSKAEKEEHLDMIKHGHLNIIVGTHS-----LLGSRVVYNNLGLLVVDEEQRF---G 226
+ + ++HG +I+VGT L R+ + L LV+DE R G
Sbjct: 108 CGGMPMGPQ---IGSLEHG-AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMG 163
Query: 227 VKQKEK--IASFKISVDVLTLSATPIPRTL-YLALTGFRDASLIS------TPPPERLPI 277
++ + IA+ L SAT P ++ +A + R+A +I T +
Sbjct: 164 FQEALEAIIAAAPAERQTLLFSAT-YPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFY 222
Query: 278 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 337
K SA E + + + + VF R ++ D L Q+ G + HG
Sbjct: 223 KVEGSAARDEALETLLLHHQPTSSVVFCNTKR--EVQNVADALHQS--GFSVIELHGDME 278
Query: 338 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 397
R+ ++ + +FA +I IL+ T++ GLD+ N + + D+ + ++++ GR GRA
Sbjct: 279 QRERDQALVQFANKSISILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRI-GRTGRA 337
Query: 398 DKEAHAYLFYPD 409
+ A+ F+ D
Sbjct: 338 GSKGLAFSFFSD 349
>TIGR_CMR|CJE_0782 [details] [associations]
symbol:CJE_0782 "primosomal protein N'" species:195099
"Campylobacter jejuni RM1221" [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0003688 "DNA replication origin binding"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005259 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000025
GenomeReviews:CP000025_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1198 KO:K04066
ProtClustDB:PRK05580 TIGRFAMs:TIGR00595 HOGENOM:HOG000037414
RefSeq:YP_178788.1 ProteinModelPortal:Q5HV97 STRING:Q5HV97
GeneID:3230734 KEGG:cjr:CJE0782 PATRIC:20043313 OMA:WHSKITK
BioCyc:CJEJ195099:GJC0-798-MONOMER Uniprot:Q5HV97
Length = 617
Score = 137 (53.3 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 48/151 (31%), Positives = 72/151 (47%)
Query: 115 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 174
L+ D G GKTE+ + I + GKQA++L P I L Q + +R Y L
Sbjct: 134 LLFADTGSGKTEIYISLIKECLEQGKQALLLMPEIALTPQ----MQKRLEVYFKDNFFLW 189
Query: 175 SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEK-- 232
SK +K+E+L+ G + ++ G S L + + NLGL+VVDEE K +
Sbjct: 190 HSKISKKKKQEYLERFCKGEVLLVAGARSALF--LPFRNLGLIVVDEEHDNSYKASNQPF 247
Query: 233 -----IASF---KISVDVLTLSATPIPRTLY 255
+A F K ++ V+ SATP + Y
Sbjct: 248 INARDLALFLGQKNNIKVVLGSATPSLTSFY 278
Score = 67 (28.6 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 28/110 (25%), Positives = 48/110 (43%)
Query: 309 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYS--RQLEETMEKFAQGAIKILICTNIVESGL 366
R G E ++ LQ A P IA + + ++L ++ F + I ILI T+++ G
Sbjct: 389 RKMGTAELLELLQNALPLAKIAKFDSDEITSVKKLNTILKDFNENKIDILIGTSMLAKGH 448
Query: 367 DIQNANTIIVQDVQQF-----------GLAQLYQLRGRVGRADKEAHAYL 405
D + + ++ + ++ LA Q+ GR GR EA L
Sbjct: 449 DYHSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKG-EARVLL 497
>TIGR_CMR|DET_0337 [details] [associations]
symbol:DET_0337 "primosomal protein N'" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0003688 "DNA replication origin
binding" evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005259 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000027
GenomeReviews:CP000027_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1198 KO:K04066
TIGRFAMs:TIGR00595 HOGENOM:HOG000037414 RefSeq:YP_181084.1
ProteinModelPortal:Q3Z9L5 STRING:Q3Z9L5 GeneID:3230382
KEGG:det:DET0337 PATRIC:21607743 OMA:VLANHEQ ProtClustDB:CLSK935638
BioCyc:DETH243164:GJNF-337-MONOMER Uniprot:Q3Z9L5
Length = 815
Score = 156 (60.0 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 63/233 (27%), Positives = 115/233 (49%)
Query: 89 EPTPDQKKAFLDVERDLT----ERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
E +P QKK + R L + + P L+ G G GKTE+ L+A+ + GK+A+V
Sbjct: 276 ELSPPQKKCLEFITRSLNTPPEDDQNPRTFLLHGITGSGKTEIYLQALAESLRLGKKAIV 335
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
L P I L Q ++ ++P ++ +L S E+ + IK+G +I++G S
Sbjct: 336 LVPEISLTPQ---TIARFAGRFPG-QIAVLHSRLSPGEQFDEWQRIKNGQADIVIGPRSA 391
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKE-------KIASFKISVD---VLTL-SATPIPRT 253
L + + + G++++DEE + KQ++ + + K++ + VL L SATP +
Sbjct: 392 LFAPL--DKPGIIIIDEEHEWTYKQQDPQPRYHTRTVANKMAEEYGAVLVLGSATPDVDS 449
Query: 254 LYLALTGFRDASLISTPPPERL-PIKTHLSAFSKEKVISAIKYELDRGGQVFY 305
+ A G L+ P ERL P + ++ K +++ ++ EL G + +
Sbjct: 450 YFKAQKGIYQ--LLELP--ERLTPYRG--ASLPKTELVD-MRTELSEGNRSIF 495
Score = 49 (22.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 342 EETMEKFAQGAIKILICTNIVESGLDIQNANTI 374
++ M++F+ ILI T +V GLD+ + +
Sbjct: 614 QQIMDRFSCHQADILIGTQMVAKGLDLPDVTLV 646
>POMBASE|SPAC22F3.08c [details] [associations]
symbol:rok1 "ATP-dependent RNA helicase Rok1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC22F3.08c GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000242486 KO:K14779
PIR:T38183 RefSeq:NP_593033.1 ProteinModelPortal:Q09775
STRING:Q09775 EnsemblFungi:SPAC22F3.08c.1 GeneID:2541786
KEGG:spo:SPAC22F3.08c OMA:ERESINT OrthoDB:EOG425926
NextBio:20802875 Uniprot:Q09775
Length = 481
Score = 153 (58.9 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 81/321 (25%), Positives = 138/321 (42%)
Query: 113 DRLICGDVGFGKTEVALRAIF----CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 168
D L C G GKT L I V G +A+++APT L +Q + +E+ S
Sbjct: 85 DLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQ-AEKLSFGTS 143
Query: 169 IKVGLLSR----FQSKAEK-EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQ 223
+K+ LS+ Q KA K E DM + ++ + L + + V+DE
Sbjct: 144 LKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTGLS----FEKVEFFVMDEAD 199
Query: 224 RF---G-VKQKEKIASFKISVDVL-TLSATPIP-RTLYLA----------LTGFRDASLI 267
R G ++Q + I S S ++ +L + IP R LA + G +DA+
Sbjct: 200 RLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRIIVGLKDAATD 259
Query: 268 STPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD-FLQQAFPG 326
S +RL L S I ++ + G V+ ++ +E + + F
Sbjct: 260 SID--QRL-----LFVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKALYTELLFDE 312
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+ + + HG+ + EE + KF +G I +LI T+++ G+D +I D Q +
Sbjct: 313 IHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSY 372
Query: 387 LYQLRGRVGRADKEAHAYLFY 407
++++ GR GRA A F+
Sbjct: 373 IHRI-GRTGRAGNTGQAVTFF 392
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 152 (58.6 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 81/316 (25%), Positives = 136/316 (43%)
Query: 121 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRF 177
G GKT A+ + K Q+MV+ PT LA Q + + +IK+ L
Sbjct: 57 GSGKTAAFGLALLNKLEVKKFRIQSMVICPTRELADQVAKELRKLARGIHNIKILTLC-- 114
Query: 178 QSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-----YNNLGLLVVDEEQRFGVKQKEK 232
+ ++HG ++IVGT L V+ +NL LLV+DE R E
Sbjct: 115 -GGTPFGPQIGSLEHG-AHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRM----LEM 168
Query: 233 IASFKISVDVLTLSATPIPRTLYLALTGFRDA------SLISTPPPERLPIKTHLSAFSK 286
F+ ++D + + TP+ R L F D S+++ P ++ S S+
Sbjct: 169 --GFQAALDNI-VGRTPLDRQTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQSTISQ 225
Query: 287 E--KV------ISAIKYELDRGGQV----FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHG 334
+ KV + A++ L G QV + + K ++ D L F G + HG
Sbjct: 226 KFFKVGNDDDRLDALRLLL-LGNQVESTAIFCNTK-KETQQVADALH--FDGFSVLALHG 281
Query: 335 QQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRV 394
R ++T+ +FA + IL+ T++ GLDI + + +I + + ++++ GR
Sbjct: 282 DLEQRDRDQTLLRFANKSASILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRI-GRT 340
Query: 395 GRADKEAHAYLFYPDK 410
GRA AY + DK
Sbjct: 341 GRAGSTGIAYSLFSDK 356
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 152 (58.6 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 81/316 (25%), Positives = 136/316 (43%)
Query: 121 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRF 177
G GKT A+ + K Q+MV+ PT LA Q + + +IK+ L
Sbjct: 57 GSGKTAAFGLALLNKLEVKKFRIQSMVICPTRELADQVAKELRKLARGIHNIKILTLC-- 114
Query: 178 QSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-----YNNLGLLVVDEEQRFGVKQKEK 232
+ ++HG ++IVGT L V+ +NL LLV+DE R E
Sbjct: 115 -GGTPFGPQIGSLEHG-AHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRM----LEM 168
Query: 233 IASFKISVDVLTLSATPIPRTLYLALTGFRDA------SLISTPPPERLPIKTHLSAFSK 286
F+ ++D + + TP+ R L F D S+++ P ++ S S+
Sbjct: 169 --GFQAALDNI-VGRTPLDRQTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQSTISQ 225
Query: 287 E--KV------ISAIKYELDRGGQV----FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHG 334
+ KV + A++ L G QV + + K ++ D L F G + HG
Sbjct: 226 KFFKVGNDDDRLDALRLLL-LGNQVESTAIFCNTK-KETQQVADALH--FDGFSVLALHG 281
Query: 335 QQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRV 394
R ++T+ +FA + IL+ T++ GLDI + + +I + + ++++ GR
Sbjct: 282 DLEQRDRDQTLLRFANKSASILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRI-GRT 340
Query: 395 GRADKEAHAYLFYPDK 410
GRA AY + DK
Sbjct: 341 GRAGSTGIAYSLFSDK 356
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 151 (58.2 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 76/278 (27%), Positives = 123/278 (44%)
Query: 141 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 200
+A++L PT LA Q D + + FS+Y IK G++ A + + M+K G L+++V
Sbjct: 93 RALILTPTRELANQVADNIKQ-FSQYLPIKSGVVYGGGKMASQTK---MLKQG-LDVLVA 147
Query: 201 THSLLGSRVVYNNLGL-----LVVDEEQRF---G-VKQKEKIA-SFKISVDVLTLSATPI 250
T L + N+ L LV+DE R G + EK+ + K L SAT
Sbjct: 148 TPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLAVKHKHQTLMFSATFS 207
Query: 251 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAF--SKEKVISAIKYELDRGGQVFYVLP 308
R LA + IS K + + ++E+ + EL VL
Sbjct: 208 DRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEERKRELLS-ELIGVNNWQQVLV 266
Query: 309 RIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 366
G +E + L + G+ A+ HG + + +E+F++G +++L+ T++ GL
Sbjct: 267 -FAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQFSEGKVRVLVATDVAARGL 325
Query: 367 DIQNANTIIVQDVQQFGLAQLYQLR-GRVGRADKEAHA 403
DI + +V F L + Y R GR GRA K A
Sbjct: 326 DIPDL-AFVVNFHLPF-LPEDYVHRVGRTGRAGKSGTA 361
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 151 (58.2 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 78/316 (24%), Positives = 137/316 (43%)
Query: 121 GFGKTE---VALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRF 177
G GKT + L + +S QA+VL PT LA Q + R +++ D + +L+
Sbjct: 51 GSGKTAAFGIGLLSRLDALSFRVQALVLCPTRELADQVGKEL-RRLARFTD-NIKILT-I 107
Query: 178 QSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL-----LVVDEEQRFGVKQKEK 232
L ++HG ++++GT L + +L L LV+DE R
Sbjct: 108 CGGVPFGPQLGSLEHG-AHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRM------L 160
Query: 233 IASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISA 292
F+ + L +A P +TL + T + D+ + +R P++ + E I
Sbjct: 161 DMGFQDDISALIAAAPPKRQTLLFSAT-YPDSIAAMSAGVQREPVEVSVDEVHGEGAIEQ 219
Query: 293 IKYELDRGGQVFYVLPRIKGLEEPMDFL---------QQAFPGVDI----AIA-HGQQYS 338
+ YE+D GQ + RI G P L Q+ + + A+A HG
Sbjct: 220 VFYEVD-SGQRIEAVERILGHYRPESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQ 278
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
R+ + + +FA + +L+ T++ GLDI+ + +I ++ + +++ GR GRA
Sbjct: 279 RERDRVLVRFANRSASVLVATDVAARGLDIKELSAVINYELTRNPEVHTHRI-GRTGRAG 337
Query: 399 KEAHAY-LFYPDKSLL 413
+ A L P +S L
Sbjct: 338 ERGLAVSLVTPRESRL 353
>GENEDB_PFALCIPARUM|PFE0215w [details] [associations]
symbol:PFE0215w "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
Length = 755
Score = 152 (58.6 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 41/138 (29%), Positives = 67/138 (48%)
Query: 273 ERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 332
+ + IKT K ++ I GGQV + R K LE + + +F + A+
Sbjct: 405 KHIAIKTPYDIKEKALLLEDIILVKSNGGQVI-IFTRTK-LEADILCSEGSFKSLSFAVL 462
Query: 333 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRG 392
HG E TM++F QG +ILI T+I GLDI N + +I + +++ G
Sbjct: 463 HGNIAQSTREYTMQRFRQGMFQILIATDIASRGLDISNVDLVIQCFPPNYSAVYIHRA-G 521
Query: 393 RVGRADKEAHAYLFYPDK 410
R GRA+K+ + + Y ++
Sbjct: 522 RTGRANKKGTSLVLYSNE 539
>UNIPROTKB|Q8I457 [details] [associations]
symbol:PFE0215w "ATP-dependent helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
Length = 755
Score = 152 (58.6 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 41/138 (29%), Positives = 67/138 (48%)
Query: 273 ERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 332
+ + IKT K ++ I GGQV + R K LE + + +F + A+
Sbjct: 405 KHIAIKTPYDIKEKALLLEDIILVKSNGGQVI-IFTRTK-LEADILCSEGSFKSLSFAVL 462
Query: 333 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRG 392
HG E TM++F QG +ILI T+I GLDI N + +I + +++ G
Sbjct: 463 HGNIAQSTREYTMQRFRQGMFQILIATDIASRGLDISNVDLVIQCFPPNYSAVYIHRA-G 521
Query: 393 RVGRADKEAHAYLFYPDK 410
R GRA+K+ + + Y ++
Sbjct: 522 RTGRANKKGTSLVLYSNE 539
>TIGR_CMR|CHY_1485 [details] [associations]
symbol:CHY_1485 "primosomal protein N'" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0003688 "DNA replication
origin binding" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR001650 InterPro:IPR005259
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006260 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1198
KO:K04066 TIGRFAMs:TIGR00595 HOGENOM:HOG000037414 OMA:MSLNLPD
RefSeq:YP_360317.1 ProteinModelPortal:Q3AC17 STRING:Q3AC17
GeneID:3726648 KEGG:chy:CHY_1485 PATRIC:21276101
BioCyc:CHYD246194:GJCN-1484-MONOMER Uniprot:Q3AC17
Length = 718
Score = 149 (57.5 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 69/253 (27%), Positives = 117/253 (46%)
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
P E T QK+ + ++RD+ + L+ G G GKTE+ L+ ++ GKQ + L
Sbjct: 179 PIELTESQKQVYQQIKRDMPKNFVG---LLHGITGSGKTEIYLKLAGDFLNHGKQVLFLL 235
Query: 147 PTIVLAKQHFDVVSERFSKY-PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
P I + Q +V+ R KY P+ + SR ++ EK +K G +++GT S
Sbjct: 236 PEIGITTQ---MVA-RVKKYFPENTLVYHSRLSAR-EKFTVWRELKKGSPVLVLGTRS-- 288
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKE-------KIASFK---ISVDVLTLSATPIPRTLY 255
+ + + NLGL+++DEE KQ+E ++ ++ + + +L +ATP T
Sbjct: 289 AAFLPFQNLGLIILDEEHELSYKQEETPKYHVREVVYWRAKRLGIPLLLGTATPSMETYA 348
Query: 256 LALTG-----FRDASLISTPPPERLPIKTHLSAFSKEK-VISA-----IKYELDRGGQVF 304
++G F + P P+ + + A +IS+ I L +G QVF
Sbjct: 349 AVISGLIKYYFLGKRYQNRPYPQVIIVDMFKEAKEGNTGIISSVLQKKISERLQKGEQVF 408
Query: 305 YVLPRIKGLEEPM 317
L R +G PM
Sbjct: 409 LFLNR-RGFA-PM 419
Score = 48 (22.0 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 500 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 546
+P E I NP + +A + + L + SLR+Q G P+S
Sbjct: 575 VPGEVIIQTFNPENYIIQAVQRGNFQQYALKEL--SLRKQTGYPPFS 619
>UNIPROTKB|E1BUI4 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 OMA:HIDQTPG GeneTree:ENSGT00550000075141
EMBL:AADN02043240 IPI:IPI00601309 Ensembl:ENSGALT00000010245
Uniprot:E1BUI4
Length = 676
Score = 125 (49.1 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
L QAF G+ +A + + + TM++F QG I++LI T+ G+DI+ N +I D
Sbjct: 533 LVQAFGGITVAEFSSRLPPNERQRTMKEFEQGKIQLLISTDATARGIDIKGVNCVINYDT 592
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAY 404
QF ++++ GR RA K A+
Sbjct: 593 PQFIRTYIHRV-GRTARAGKAGLAF 616
Score = 72 (30.4 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 42/135 (31%), Positives = 62/135 (45%)
Query: 111 PMDRLICGDVGFGKT--------EVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSER 162
P D + G GKT +V L + C V +A+V+ PT LA+Q VS+
Sbjct: 256 PKDICVSAPTGSGKTLSFVIPIVQVLLDRVVCQV----RALVVLPTKELAQQ----VSKV 307
Query: 163 FSKYPD---IKVGLLSRFQSKAEKEEHLDMIK-HGHLN---IIVGTHSLLGSRVV----- 210
F+ Y D +KV L++ +S A+++E L K G+ + IIV T L +
Sbjct: 308 FNIYTDGTGLKVVLITGQKSFAKEQEMLVQKKVTGYCSLADIIVATPGRLADHISKTPGF 367
Query: 211 -YNNLGLLVVDEEQR 224
L L+VDE R
Sbjct: 368 SLTQLRFLIVDEADR 382
>TIGR_CMR|CBU_1815 [details] [associations]
symbol:CBU_1815 "primosomal protein N'" species:227377
"Coxiella burnetii RSA 493" [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0003688 "DNA replication origin binding"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005259 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE016828
GenomeReviews:AE016828_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000037413 KO:K04066
TIGRFAMs:TIGR00595 RefSeq:NP_820794.1 ProteinModelPortal:Q83AR5
PRIDE:Q83AR5 GeneID:1209726 KEGG:cbu:CBU_1815 PATRIC:17932365
OMA:RRALVCH ProtClustDB:CLSK915049
BioCyc:CBUR227377:GJ7S-1788-MONOMER Uniprot:Q83AR5
Length = 662
Score = 143 (55.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 59/213 (27%), Positives = 99/213 (46%)
Query: 115 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 174
L+ G G GKTEV LR I ++ KQA++L P I L Q + ERF+ + +L
Sbjct: 154 LLAGVTGSGKTEVYLRCIEKLIQQEKQALILVPEIGLTPQTLNRFRERFN----VPTAVL 209
Query: 175 SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE--K 232
+ ++ + M K G I++GT S + + ++ N G++++DEE KQ+ +
Sbjct: 210 HSSLTDKKRAQAWMMAKRGTAKIVIGTRSAIFTPLL--NPGIIILDEEHDTSFKQQSGFR 267
Query: 233 IASFKISV--------DVLTLSATPIPRTLY-LALTGFRDASLISTPPPERLPIKT---- 279
++ ++V V+ SATP +LY + ++ SL +LP T
Sbjct: 268 YSARDLAVMRGQFENIPVVLGSATPSLESLYNVERRRYQLLSLPGRAGKAKLPSLTIVDL 327
Query: 280 ---HLSAFSKEKVISAIKYELDRGGQVFYVLPR 309
L A E ++ +I+ + GQV L R
Sbjct: 328 RQKKLIAGMSEDLLISIEKHIKNKGQVLLFLNR 360
Score = 51 (23.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 27/108 (25%), Positives = 40/108 (37%)
Query: 312 GLEEPMDFLQQAFPGVDIA-IAHGQQYSRQ-LEETMEKFAQGAIKILICTNIVESGLDIQ 369
G E LQQ FP DI I ++ +E + ILI T ++ G
Sbjct: 423 GTERLEAALQQRFPNDDIVRIDRDSTRTKNSMENKLNLIHNREAPILIGTQMIAKGHHFS 482
Query: 370 NANTIIVQDVQQFGL-----------AQLY-QLRGRVGRADKEAHAYL 405
+ + + D GL QL Q+ GR GR D++ +
Sbjct: 483 HLTLVAIIDADS-GLYSADFRATERMGQLLTQVAGRAGRVDRQGEVLI 529
>TIGR_CMR|GSU_0128 [details] [associations]
symbol:GSU_0128 "primosomal protein n`" species:243231
"Geobacter sulfurreducens PCA" [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0003688 "DNA replication origin binding"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005259 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 KO:K04066 TIGRFAMs:TIGR00595
HOGENOM:HOG000037414 RefSeq:NP_951190.1 ProteinModelPortal:Q74GW6
DNASU:2688064 GeneID:2688064 KEGG:gsu:GSU0128 PATRIC:22023004
OMA:RMTVHQR ProtClustDB:CLSK827655
BioCyc:GSUL243231:GH27-139-MONOMER Uniprot:Q74GW6
Length = 751
Score = 151 (58.2 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 63/203 (31%), Positives = 97/203 (47%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQF-PYE 89
L++ + +A E R+ G+ ++Q + L EL + + R Y ++P E P E
Sbjct: 162 LAEREEESASELRRLFGECSVQ--LRRLRELGFVEMAE-REIY-RDPFRMEAVGHDRPLE 217
Query: 90 PTPDQKKAFLDVERDLTE-RETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
Q A + + L R TP L+ G G GKTEV L+AI + G+ A+VL P
Sbjct: 218 LNERQSAALVRLRAALDAGRFTPF--LLRGVTGSGKTEVYLQAIAHCLEQGRSALVLVPE 275
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
I L Q +VS RF + V +L S E+ + I+ G I++G S + +
Sbjct: 276 IALTPQ---LVS-RFRRRFRCGVAVLHSGLSDGERFDEWRRIRRGEAAIVIGARSAIFAP 331
Query: 209 VVYNNLGLLVVDEEQRFGVKQKE 231
+ +LG++VVDEE KQ E
Sbjct: 332 LA--DLGMIVVDEEHEGSYKQGE 352
Score = 41 (19.5 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 23/100 (23%), Positives = 40/100 (40%)
Query: 312 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQ--LEETMEKFAQGAIKILICTNIVESGLDIQ 369
G E+ ++++ FP + +R+ + K A+ ILI T +V G D
Sbjct: 510 GTEQVEAYVREHFPHARVDRMDRDTTARRGGHARILRKVAERQTDILIGTQMVAKGHDFP 569
Query: 370 NANTIIVQDVQQ------FGLAQ-----LYQLRGRVGRAD 398
+ + V+ + A+ + QL GR GR D
Sbjct: 570 GITLVGILSVESTLNIPDYRSAERTFQLVTQLIGRAGRGD 609
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 140 (54.3 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 75/316 (23%), Positives = 130/316 (41%)
Query: 113 DRLICGDVGFGKTEVALRAIFCVVSAGK-------QAMVLAPTIVLAKQHFDVVSERFSK 165
D + G GKT + I + G+ +A++L PT LA Q + V E++ K
Sbjct: 40 DLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKV-EQYGK 98
Query: 166 YPDIK-VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS----LLGSRVVY-NNLGLLVV 219
+K + + +A+K+ +D + +++V T L G R VY + ++V+
Sbjct: 99 DTGLKSLAVFGGVDEQAQKQRLIDGV-----DVLVATPGRLMDLYGQRAVYFEEIEMVVL 153
Query: 220 DEEQRF---G-VKQKEKIASFKIS-VDVLTLSATPIPRTLYLALTGFRDASLISTPPPE- 273
DE R G ++ KI S V L SAT + LA T RD IS +
Sbjct: 154 DEADRMLDMGFIESINKIIDCLPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQA 213
Query: 274 -RLPIKTHLSAFSKEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIA 330
+ I L K+ + + + ++ + Q + G + + L++ G+
Sbjct: 214 SKSNISQWLITVDKDTKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKR--GIHAE 271
Query: 331 IAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 390
H + + +E F G IK L+ T + G+DI + ++ D+ F +
Sbjct: 272 AFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLP-FPADEYVHR 330
Query: 391 RGRVGRADKEAHAYLF 406
GR GRA+ A F
Sbjct: 331 IGRTGRAEAVGEAISF 346
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 140 (54.3 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 75/316 (23%), Positives = 130/316 (41%)
Query: 113 DRLICGDVGFGKTEVALRAIFCVVSAGK-------QAMVLAPTIVLAKQHFDVVSERFSK 165
D + G GKT + I + G+ +A++L PT LA Q + V E++ K
Sbjct: 40 DLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKV-EQYGK 98
Query: 166 YPDIK-VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS----LLGSRVVY-NNLGLLVV 219
+K + + +A+K+ +D + +++V T L G R VY + ++V+
Sbjct: 99 DTGLKSLAVFGGVDEQAQKQRLIDGV-----DVLVATPGRLMDLYGQRAVYFEEIEMVVL 153
Query: 220 DEEQRF---G-VKQKEKIASFKIS-VDVLTLSATPIPRTLYLALTGFRDASLISTPPPE- 273
DE R G ++ KI S V L SAT + LA T RD IS +
Sbjct: 154 DEADRMLDMGFIESINKIIDCLPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQA 213
Query: 274 -RLPIKTHLSAFSKEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIA 330
+ I L K+ + + + ++ + Q + G + + L++ G+
Sbjct: 214 SKSNISQWLITVDKDTKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKR--GIHAE 271
Query: 331 IAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 390
H + + +E F G IK L+ T + G+DI + ++ D+ F +
Sbjct: 272 AFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLP-FPADEYVHR 330
Query: 391 RGRVGRADKEAHAYLF 406
GR GRA+ A F
Sbjct: 331 IGRTGRAEAVGEAISF 346
>UNIPROTKB|A8MTP9 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000242486
HOVERGEN:HBG051332 EMBL:AC091199 HGNC:HGNC:20038
PharmGKB:PA134904836 ChiTaRS:DDX52 NextBio:42007 IPI:IPI00394982
ProteinModelPortal:A8MTP9 SMR:A8MTP9 STRING:A8MTP9 PRIDE:A8MTP9
Ensembl:ENST00000394367 ArrayExpress:A8MTP9 Bgee:A8MTP9
Uniprot:A8MTP9
Length = 491
Score = 140 (54.3 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 31/111 (27%), Positives = 59/111 (53%)
Query: 306 VLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 364
VL ++ +E + F + + G+++ + H ++ +Q + T+ F G I +LICT ++
Sbjct: 307 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLAR 366
Query: 365 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP--DKSLL 413
G+D + N +I D + ++++ GR GRA + A F+ DK LL
Sbjct: 367 GIDFKGVNLVINYDFPTSSVEYIHRI-GRTGRAGNKGKAITFFTEDDKPLL 416
>ZFIN|ZDB-GENE-060623-1 [details] [associations]
symbol:ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
52" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060623-1
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11056 HOVERGEN:HBG051332 KO:K14779
OrthoDB:EOG4XKV6Q EMBL:BC117610 IPI:IPI00627696
RefSeq:NP_001037780.1 UniGene:Dr.13799 ProteinModelPortal:Q1ECZ5
STRING:Q1ECZ5 GeneID:407696 KEGG:dre:407696 NextBio:20818558
Uniprot:Q1ECZ5
Length = 606
Score = 141 (54.7 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 86/358 (24%), Positives = 155/358 (43%)
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC----VVSA 138
AA F PTP Q +A V + +RE L C G GKT + ++
Sbjct: 184 AAGFQ-TPTPIQMQA---VPLMMHKREI----LACAPTGSGKTMAFCLPLLAHLRQPLNK 235
Query: 139 GKQAMVLAPTIVLAKQ-HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 197
G +A++++PT LA Q H +++ + S+ +V ++++ +K K +I
Sbjct: 236 GFRALIISPTRELATQTHRELL--KLSEGVGFRVHMINKGVEAVKKYGPKSAKK---FDI 290
Query: 198 IVGTHS----LLGSRVVYNNLGL---LVVDEEQRFGVKQK----EKIASFKISVD----- 241
+V T + LL NL LVVDE + K E++A+ ++
Sbjct: 291 LVTTPNRLIYLLNQDPPAINLSSVEWLVVDESDKLFEDGKTGFREQLATIFLACSSPNVR 350
Query: 242 -VLTLS--ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELD 298
VL + AT + R L L S+ + + L S+ I A++ L
Sbjct: 351 RVLFSATFATDVERWCKLNLDNLVSVSIGARNSAAETVEQQLLFVGSENGKILAMR-NLI 409
Query: 299 RGGQVFYVLPRIKGLEEPMDFLQQ-AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILI 357
+ G + VL ++ ++ + + + G+++ + H + +Q + + F G I +LI
Sbjct: 410 KQGFLPPVLVFVQSIDRARELYHELVYEGINVDVIHADRTQQQRDNVVSSFRSGKIWVLI 469
Query: 358 CTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP--DKSLL 413
CT ++ G+D + N +I D + ++++ GR GRA + A F+ DK LL
Sbjct: 470 CTALLARGIDFKGINLVINYDFPTSAVEYIHRI-GRTGRAGHKGKAVTFFTEDDKPLL 526
>UNIPROTKB|Q9Y2R4 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AF077033 EMBL:AK001652 EMBL:AK093661 EMBL:AC091199
EMBL:BC041785 EMBL:AJ010840 IPI:IPI00032423 RefSeq:NP_008941.2
UniGene:Hs.590937 PDB:3DKP PDBsum:3DKP ProteinModelPortal:Q9Y2R4
SMR:Q9Y2R4 IntAct:Q9Y2R4 STRING:Q9Y2R4 PhosphoSite:Q9Y2R4
DMDM:296439375 SWISS-2DPAGE:Q9Y2R4 PaxDb:Q9Y2R4 PRIDE:Q9Y2R4
Ensembl:ENST00000349699 GeneID:11056 KEGG:hsa:11056 UCSC:uc002hoh.2
GeneCards:GC17M035969 HGNC:HGNC:20038 MIM:612500 neXtProt:NX_Q9Y2R4
PharmGKB:PA134904836 InParanoid:Q9Y2R4 PhylomeDB:Q9Y2R4
ChiTaRS:DDX52 EvolutionaryTrace:Q9Y2R4 GenomeRNAi:11056
NextBio:42007 ArrayExpress:Q9Y2R4 Bgee:Q9Y2R4 CleanEx:HS_DDX52
Genevestigator:Q9Y2R4 GermOnline:ENSG00000141141 Uniprot:Q9Y2R4
Length = 599
Score = 140 (54.3 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 31/111 (27%), Positives = 59/111 (53%)
Query: 306 VLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 364
VL ++ +E + F + + G+++ + H ++ +Q + T+ F G I +LICT ++
Sbjct: 415 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLAR 474
Query: 365 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP--DKSLL 413
G+D + N +I D + ++++ GR GRA + A F+ DK LL
Sbjct: 475 GIDFKGVNLVINYDFPTSSVEYIHRI-GRTGRAGNKGKAITFFTEDDKPLL 524
>TIGR_CMR|APH_0356 [details] [associations]
symbol:APH_0356 "primosomal protein N'" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0003688 "DNA replication origin binding"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005259 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1198 KO:K04066 OMA:ERQTMQL
TIGRFAMs:TIGR00595 HOGENOM:HOG000037414 ProtClustDB:CLSK749377
RefSeq:YP_504963.1 ProteinModelPortal:Q2GKY8 STRING:Q2GKY8
GeneID:3930605 KEGG:aph:APH_0356 PATRIC:20949314
BioCyc:APHA212042:GHPM-385-MONOMER Uniprot:Q2GKY8
Length = 658
Score = 119 (46.9 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 49/150 (32%), Positives = 68/150 (45%)
Query: 83 AAQFPYEPTPDQKKAF-LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--AG 139
A + P +P+ DQ A VER T +D G G GKTEV A ++ A
Sbjct: 124 AGKLP-QPSEDQSYACNYIVERSTGFSVTVLD----GKTGAGKTEVYCTAAEKLLQECAD 178
Query: 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 199
Q +VL P IVLA Q + FS ++ S K +E L + G +I+V
Sbjct: 179 AQVLVLLPEIVLATQLMKRIYSYFSTCNPVEWH--SELTVKRRRENWL-AVTRGTTSIVV 235
Query: 200 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQ 229
G S L + + NL +++VDEE KQ
Sbjct: 236 GARSALF--LPFKNLKMIIVDEEHESSYKQ 263
Score = 69 (29.3 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 25/116 (21%), Positives = 49/116 (42%)
Query: 312 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 371
G+E ++ +Q+ P + ++Q +E+ QG + I+I T I+ G +
Sbjct: 426 GIERILEGIQELIPTARSVVLSSDISAKQANSIVEQVLQGEVDIIIGTQIIAKGHNFPKL 485
Query: 372 NTIIVQDVQQFGLAQ------------LYQLRGRVGRADKEAHAYL--FYPDKSLL 413
+ V D GL L+Q+ GR GR ++ L + P+ +++
Sbjct: 486 TLVGVIDAD-LGLGNSDLRATEKTYQLLHQVSGRSGRYKEKGQVVLQTYDPESAVI 540
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 139 (54.0 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 306 VLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 364
VL ++ +E + F + + G+++ + H ++ +Q + T+ F G I +LICT ++
Sbjct: 416 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLAR 475
Query: 365 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP--DKSLL 413
G+D + N +I D + ++++ GR GRA A F+ DK LL
Sbjct: 476 GIDFKGVNLVINYDFPTSSVEYIHRI-GRTGRAGNRGKAVTFFTEDDKPLL 525
>RGD|621743 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:621743
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
CTD:11056 GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AB055628 IPI:IPI00201365 RefSeq:NP_445977.1 UniGene:Rn.18605
ProteinModelPortal:Q99PT0 SMR:Q99PT0 PRIDE:Q99PT0
Ensembl:ENSRNOT00000003600 GeneID:85432 KEGG:rno:85432
InParanoid:Q99PT0 NextBio:617542 Genevestigator:Q99PT0
GermOnline:ENSRNOG00000002612 Uniprot:Q99PT0
Length = 598
Score = 139 (54.0 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 306 VLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 364
VL ++ +E + F + + G+++ + H ++ +Q + T+ F G I +LICT ++
Sbjct: 416 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLAR 475
Query: 365 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP--DKSLL 413
G+D + N +I D + ++++ GR GRA A F+ DK LL
Sbjct: 476 GIDFKGVNLVINYDFPTSSVEYIHRI-GRTGRAGNRGKAVTFFTEDDKPLL 525
>UNIPROTKB|Q8N8A6 [details] [associations]
symbol:DDX51 "ATP-dependent RNA helicase DDX51"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 KO:K14807 OMA:HIDQTPG CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 OrthoDB:EOG4JM7PM
EMBL:AK097078 EMBL:AC138466 EMBL:BC012461 EMBL:BC040185
EMBL:CR936870 IPI:IPI00217541 RefSeq:NP_778236.2 UniGene:Hs.445168
ProteinModelPortal:Q8N8A6 SMR:Q8N8A6 IntAct:Q8N8A6 STRING:Q8N8A6
PhosphoSite:Q8N8A6 DMDM:229462978 PaxDb:Q8N8A6 PRIDE:Q8N8A6
Ensembl:ENST00000397333 GeneID:317781 KEGG:hsa:317781
UCSC:uc001ujy.4 GeneCards:GC12M132621 H-InvDB:HIX0018137
HGNC:HGNC:20082 HPA:HPA039503 neXtProt:NX_Q8N8A6
PharmGKB:PA134974036 InParanoid:Q8N8A6 PhylomeDB:Q8N8A6
GenomeRNAi:317781 NextBio:96442 Bgee:Q8N8A6 CleanEx:HS_DDX51
Genevestigator:Q8N8A6 GermOnline:ENSG00000185163 Uniprot:Q8N8A6
Length = 666
Score = 117 (46.2 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
L QAF GVD+A + Q +++F QG I++LI T+ G+D+Q ++ D
Sbjct: 523 LVQAFGGVDVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDA 582
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAY 404
Q+ ++++ GR RA K A+
Sbjct: 583 PQYLRTYVHRV-GRTARAGKTGQAF 606
Score = 70 (29.7 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 36/131 (27%), Positives = 60/131 (45%)
Query: 111 PMDRLICGDVGFGKTEV----ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 166
P D + G GKT ++A+ V +A+V+ PT LA+Q VS+ F+ Y
Sbjct: 249 PSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKELAQQ----VSKVFNIY 304
Query: 167 PD---IKVGLLSRFQSKAEKEEHL-DMIKHGH---LNIIVGTHSLLGSRV------VYNN 213
D ++V L++ +S A+++E L G+ +I+V T L +
Sbjct: 305 TDATPLRVSLVTGQKSLAKEQESLVQKTADGYRCLADIVVATPGRLVDHIDQTPGFSLQQ 364
Query: 214 LGLLVVDEEQR 224
L L++DE R
Sbjct: 365 LRFLIIDEADR 375
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 137 (53.3 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 77/300 (25%), Positives = 131/300 (43%)
Query: 135 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIK-VGLLSRFQSKAEKEEHLDMIKHG 193
V ++ QA+V+APT LA Q VSE K +K V +L + + + + + KH
Sbjct: 66 VKNSAVQALVVAPTRELAIQ----VSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHP 121
Query: 194 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDV-LTLSATPIPR 252
H +IVGT G + + N G L ++ + + +++ + D+ LS P R
Sbjct: 122 H--VIVGTP---GRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAER 176
Query: 253 -TLYLALT---GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-YELD-RGGQVFYV 306
TL + T R + PE + +K +KE + I+ Y L+ + F +
Sbjct: 177 QTLLFSATMPDPIRRIAERFMNEPELVKVK------AKEMTVPNIQQYYLEVHEKKKFDI 230
Query: 307 LPRIKGLEEP------------MDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGA 352
L R+ ++ P +D L +A G HG + + KF +GA
Sbjct: 231 LTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGA 290
Query: 353 IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 412
I+IL+ T++ GLDI + D+ Q + ++++ GR GRA K A F + +
Sbjct: 291 IEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKTGVAMTFVTPREI 349
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 136 (52.9 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 88/370 (23%), Positives = 153/370 (41%)
Query: 76 NPAIAEFAAQFPYE-PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134
N + + A+ Y+ PTP Q +A + LT++ D + G GKT I
Sbjct: 9 NTQLVDTLAELGYQQPTPIQVEAIPAI---LTKQ----DVMAGAQTGTGKTAAFALPILQ 61
Query: 135 VVSAGKQ---------AMVLAPTIVLAKQHFDVVSERFSKYP---DIKVGLLSRFQSKAE 182
++ A Q A+VL PT LA Q V + F KY DI+VG+ S E
Sbjct: 62 LLMADNQSDHAAKAIRALVLVPTRELALQ----VQQSFVKYAKGTDIRVGIAYGGVS-IE 116
Query: 183 KEEHLDMIKHGHLNIIVGT------HSLLGSRVVYNNLGLLVVDEEQRF---GVKQKEKI 233
++ + + +++++ T H G+ + N L LV DE R G + +
Sbjct: 117 AQQ---AVFNAGIDVLIATPGRLLDHLRQGA-LNLNQLNTLVFDEADRMLDMGFMDEIQA 172
Query: 234 ASFKISVDVLTL--SATPIPRTLYLALTGFRDASLISTPPPERLP--IKTHLSAFSKEKV 289
++ TL SAT + RD I P I+ + A ++
Sbjct: 173 VLKQVPAQRQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRK 232
Query: 290 ISAIKYEL-DRGGQVFYVLPRIK-GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEK 347
+ + + + Q + R K G+++ L + GV HG E+ +++
Sbjct: 233 TEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKL--GVATQSFHGDLSQGAREKVLQE 290
Query: 348 FAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY-LF 406
F QG +++L+ T++ GLDI +I ++ ++++ GR GRA A LF
Sbjct: 291 FKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRI-GRTGRAGSAGLAITLF 349
Query: 407 YPDKSLLSDQ 416
+ +LL ++
Sbjct: 350 SQEDALLLEE 359
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 136 (52.9 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 88/370 (23%), Positives = 153/370 (41%)
Query: 76 NPAIAEFAAQFPYE-PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134
N + + A+ Y+ PTP Q +A + LT++ D + G GKT I
Sbjct: 9 NTQLVDTLAELGYQQPTPIQVEAIPAI---LTKQ----DVMAGAQTGTGKTAAFALPILQ 61
Query: 135 VVSAGKQ---------AMVLAPTIVLAKQHFDVVSERFSKYP---DIKVGLLSRFQSKAE 182
++ A Q A+VL PT LA Q V + F KY DI+VG+ S E
Sbjct: 62 LLMADNQSDHAAKAIRALVLVPTRELALQ----VQQSFVKYAKGTDIRVGIAYGGVS-IE 116
Query: 183 KEEHLDMIKHGHLNIIVGT------HSLLGSRVVYNNLGLLVVDEEQRF---GVKQKEKI 233
++ + + +++++ T H G+ + N L LV DE R G + +
Sbjct: 117 AQQ---AVFNAGIDVLIATPGRLLDHLRQGA-LNLNQLNTLVFDEADRMLDMGFMDEIQA 172
Query: 234 ASFKISVDVLTL--SATPIPRTLYLALTGFRDASLISTPPPERLP--IKTHLSAFSKEKV 289
++ TL SAT + RD I P I+ + A ++
Sbjct: 173 VLKQVPAQRQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRK 232
Query: 290 ISAIKYEL-DRGGQVFYVLPRIK-GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEK 347
+ + + + Q + R K G+++ L + GV HG E+ +++
Sbjct: 233 TEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKL--GVATQSFHGDLSQGAREKVLQE 290
Query: 348 FAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY-LF 406
F QG +++L+ T++ GLDI +I ++ ++++ GR GRA A LF
Sbjct: 291 FKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRI-GRTGRAGSAGLAITLF 349
Query: 407 YPDKSLLSDQ 416
+ +LL ++
Sbjct: 350 SQEDALLLEE 359
>UNIPROTKB|I3LJA0 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:FP565631 EMBL:FP312903 Ensembl:ENSSSCT00000024730
Uniprot:I3LJA0
Length = 507
Score = 137 (53.3 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 306 VLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 364
VL ++ +E + F + + G+++ + H + +Q + T+ F G I +LICT ++
Sbjct: 323 VLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLAR 382
Query: 365 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP--DKSLL 413
G+D + N +I D + ++++ GR GRA + A F+ DK LL
Sbjct: 383 GIDFKGVNLVINYDFPTSSVEYIHRI-GRTGRAGHKGKAVTFFTEDDKPLL 432
>SGD|S000003139 [details] [associations]
symbol:ROK1 "RNA-dependent ATPase" species:4932
"Saccharomyces cerevisiae" [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0030686
"90S preribosome" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0048254 "snoRNA localization" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000472 "endonucleolytic
cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003139
GO:GO:0005524 GO:GO:0005730 EMBL:BK006941 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:X85757
GO:GO:0030686 GO:GO:0004004 GO:GO:0000447 GO:GO:0000472
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000480
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG OrthoDB:EOG425926 EMBL:Z34901 EMBL:Z72693 PIR:S59649
RefSeq:NP_011344.1 ProteinModelPortal:P45818 SMR:P45818
DIP:DIP-5111N IntAct:P45818 MINT:MINT-483312 STRING:P45818
PaxDb:P45818 PeptideAtlas:P45818 EnsemblFungi:YGL171W GeneID:852704
KEGG:sce:YGL171W CYGD:YGL171w NextBio:972056 Genevestigator:P45818
GermOnline:YGL171W GO:GO:0048254 Uniprot:P45818
Length = 564
Score = 124 (48.7 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+++ + H ++ + Q + +E+F G + LICT+++ G+D + N +I DV G +Q
Sbjct: 397 INVDVIHAERTALQRDRIIERFKTGELWCLICTDVLARGIDFKGVNLVINYDVP--GSSQ 454
Query: 387 LYQLR-GRVGRADKEAHAYLFY 407
Y R GR GR + A FY
Sbjct: 455 AYVHRIGRTGRGGRSGKAITFY 476
Score = 60 (26.2 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 25/73 (34%), Positives = 35/73 (47%)
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-----SAGKQAM 143
EPTP Q + + V L R D L CG G GKT L + + +AG + +
Sbjct: 144 EPTPIQCEC-IPVA--LNNR----DVLACGPTGSGKTLAFLIPLVQQIIDDKQTAGLKGL 196
Query: 144 VLAPTIVLAKQHF 156
+++PT LA Q F
Sbjct: 197 IISPTKELANQIF 209
>TAIR|locus:2147987 [details] [associations]
symbol:UAP56a "homolog of human UAP56 a" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0009506
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046686
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL360314 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ010466 EMBL:AY052303
EMBL:BT001052 EMBL:AK221273 EMBL:AK221708 EMBL:AK226428
IPI:IPI00760330 IPI:IPI00760336 IPI:IPI00760344 PIR:T51343
RefSeq:NP_568244.2 RefSeq:NP_568245.1 UniGene:At.49007
UniGene:At.73904 ProteinModelPortal:Q56XG6 SMR:Q56XG6 IntAct:Q56XG6
STRING:Q56XG6 PRIDE:Q56XG6 EnsemblPlants:AT5G11170.1
EnsemblPlants:AT5G11200.1 GeneID:830986 GeneID:830990
KEGG:ath:AT5G11170 KEGG:ath:AT5G11200 GeneFarm:932 TAIR:At5g11170
InParanoid:Q56XG6 PhylomeDB:Q56XG6 ProtClustDB:CLSN2689601
Genevestigator:Q56XG6 Uniprot:Q56XG6
Length = 427
Score = 135 (52.6 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 83/324 (25%), Positives = 137/324 (42%)
Query: 112 MDRLIC-GDVGFGKTEVALRAIFCVV--SAGK-QAMVLAPTIVLAKQHFDVVSE--RFSK 165
MD +IC G GKT V + + + S G+ A+VL T LA Q + +E RFS
Sbjct: 84 MD-VICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQ---ICNEFVRFST 139
Query: 166 Y-PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL-----LVV 219
Y PD KV + F + H D++K+ +I+VGT + + +L L ++
Sbjct: 140 YLPDTKVSV---FYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFIL 196
Query: 220 DEEQRF--GVKQKEKIAS-FKISV---DVLTLSATPIPRTLYLALTGFRDASLISTPPPE 273
DE + + + + FK++ V+ SAT + +D I
Sbjct: 197 DECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA 256
Query: 274 RLPIK---TH---LSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGV 327
+L + H LS K + ++ + LD V +V + E ++ FP
Sbjct: 257 KLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPS- 315
Query: 328 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 387
I I G +L + F +G +IL+ T++V G+DI+ N +I D+ L
Sbjct: 316 -ICIHSGMSQEERLTR-YKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYL 373
Query: 388 YQLRGRVGRADKEAHAYLFYPDKS 411
+++ GR GR + A F S
Sbjct: 374 HRV-GRAGRFGTKGLAITFVASAS 396
>UNIPROTKB|A5D7C1 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:BC140501 IPI:IPI00692860
RefSeq:NP_001096708.1 UniGene:Bt.51117 ProteinModelPortal:A5D7C1
SMR:A5D7C1 PRIDE:A5D7C1 Ensembl:ENSBTAT00000013622 GeneID:510826
KEGG:bta:510826 CTD:11056 GeneTree:ENSGT00550000074863
HOGENOM:HOG000242486 HOVERGEN:HBG051332 InParanoid:A5D7C1 KO:K14779
OMA:NVMKQSG OrthoDB:EOG4XKV6Q NextBio:20869637 ArrayExpress:A5D7C1
Uniprot:A5D7C1
Length = 596
Score = 137 (53.3 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 306 VLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 364
VL ++ +E + F + + G+++ + H + +Q + T+ F G I +LICT ++
Sbjct: 413 VLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLAR 472
Query: 365 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP--DKSLL 413
G+D + N +I D + ++++ GR GRA + A F+ DK LL
Sbjct: 473 GIDFKGVNLVINYDFPTSSVEYIHRI-GRTGRAGHKGKAVTFFTEDDKPLL 522
>UNIPROTKB|J9P4L6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AAEX03026218 Ensembl:ENSCAFT00000021498 Uniprot:J9P4L6
Length = 598
Score = 137 (53.3 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 306 VLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 364
VL ++ +E + F + + G+++ + H + +Q + T+ F G I +LICT ++
Sbjct: 414 VLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLAR 473
Query: 365 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP--DKSLL 413
G+D + N +I D + ++++ GR GRA + A F+ DK LL
Sbjct: 474 GIDFKGVNLVINYDFPTSSVEYIHRI-GRTGRAGHKGKAVTFFTEDDKPLL 523
>UNIPROTKB|E2RB54 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:ERESINT
EMBL:AAEX03006616 Ensembl:ENSCAFT00000028820 Uniprot:E2RB54
Length = 601
Score = 137 (53.3 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 306 VLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 364
VL ++ +E + F + + G+++ + H + +Q + T+ F G I +LICT ++
Sbjct: 417 VLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLAR 476
Query: 365 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP--DKSLL 413
G+D + N +I D + ++++ GR GRA + A F+ DK LL
Sbjct: 477 GIDFKGVNLVINYDFPTSSVEYIHRI-GRTGRAGHKGKAVTFFTEDDKPLL 526
>DICTYBASE|DDB_G0269932 [details] [associations]
symbol:uap56 "ATP-dependent RNA helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0000348 "mRNA
branch site recognition" evidence=ISS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269932
GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0005681 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12812 GO:GO:0000348 RefSeq:XP_646415.1
ProteinModelPortal:Q55CR6 SMR:Q55CR6 PRIDE:Q55CR6
EnsemblProtists:DDB0233387 GeneID:8617372 KEGG:ddi:DDB_G0269932
InParanoid:Q55CR6 OMA:GGANMNP ProtClustDB:CLSZ2429041
Uniprot:Q55CR6
Length = 428
Score = 133 (51.9 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 81/321 (25%), Positives = 136/321 (42%)
Query: 115 LIC-GDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAKQHFDVVSERFSKY-PDI 169
+IC G GKT V + + + G +VL T LA Q D +RF+KY P++
Sbjct: 88 VICQAKSGMGKTAVFVLSTLQQIDNNPNGITTLVLCNTRELAYQICDEF-DRFTKYLPNV 146
Query: 170 KVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL-----LVVDE--- 221
K ++ + H D+IK NII+GT + L L ++DE
Sbjct: 147 KTAVI---YGGIPVQTHKDLIKEKKPNIIIGTPGRILQLASEGALSLKEIKQFILDECDT 203
Query: 222 -----EQRFGVKQKEKI--ASFKISVDVLTLSAT--PI-PRTLYLALTGF-RDASLISTP 270
+ R V++ K+ A+ ++ + TLS T PI + + L + D S ++
Sbjct: 204 MLESLDMRKDVQKIFKLIPANKQVMMFSATLSDTIRPICKKFMNNPLEIYINDGSKLTLH 263
Query: 271 PPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ-AFPGVDI 329
++ + ++ K K + + LD V +V ++ + LQ FP + I
Sbjct: 264 GLQQYYVP--ITEEQKNKKLIELLDSLDFNQAVIFV-KSVRRADALNKILQDIGFPSICI 320
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
H + E KF +I++ TNI G+DI+ N +I D+ + L++
Sbjct: 321 ---HRDLDQKDRIEQYRKFKNFESRIMVATNIFGRGIDIERVNVVINYDMAESADTYLHR 377
Query: 390 LRGRVGRADKEAHAYLFYPDK 410
+ GR GR + A F P K
Sbjct: 378 V-GRAGRFGTKGLAISFVPSK 397
>UNIPROTKB|F1NQA6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 EMBL:AADN02025730
IPI:IPI00822952 Ensembl:ENSGALT00000039070 ArrayExpress:F1NQA6
Uniprot:F1NQA6
Length = 603
Score = 135 (52.6 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 34/127 (26%), Positives = 66/127 (51%)
Query: 290 ISAIKYELDRGGQVFYVLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKF 348
++A++ EL + G VL ++ +E + F + + G+++ + H + +Q + + F
Sbjct: 394 LTAMR-ELVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVHSF 452
Query: 349 AQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP 408
G I +LICT ++ G+D + N +I D+ + ++++ GR GRA A F+
Sbjct: 453 RAGKIWVLICTALLARGIDFKGVNMVINYDLPTSAVEYIHRI-GRTGRAGHTGKAVTFFT 511
Query: 409 --DKSLL 413
DK LL
Sbjct: 512 EDDKPLL 518
>UNIPROTKB|E1C4M1 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AADN02025730 IPI:IPI00593921 ProteinModelPortal:E1C4M1
Ensembl:ENSGALT00000008815 ArrayExpress:E1C4M1 Uniprot:E1C4M1
Length = 604
Score = 135 (52.6 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 34/127 (26%), Positives = 66/127 (51%)
Query: 290 ISAIKYELDRGGQVFYVLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKF 348
++A++ EL + G VL ++ +E + F + + G+++ + H + +Q + + F
Sbjct: 395 LTAMR-ELVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVHSF 453
Query: 349 AQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP 408
G I +LICT ++ G+D + N +I D+ + ++++ GR GRA A F+
Sbjct: 454 RAGKIWVLICTALLARGIDFKGVNMVINYDLPTSAVEYIHRI-GRTGRAGHTGKAVTFFT 512
Query: 409 --DKSLL 413
DK LL
Sbjct: 513 EDDKPLL 519
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 135 (52.6 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 71/287 (24%), Positives = 126/287 (43%)
Query: 141 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 200
Q +VLAPT LA Q + +++ FSK+ V +++ + + + L ++ G I+VG
Sbjct: 76 QILVLAPTRELAVQVAEAMTD-FSKHMR-GVNVVALYGGQ-RYDVQLRALRQGP-QIVVG 131
Query: 201 THSLLGSRVVYNNLGL-----LVVDEEQ---RFG-VKQKEKI-ASFKISVDVLTLSATPI 250
T L + L L LV+DE R G ++ E I A SAT +
Sbjct: 132 TPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSAT-M 190
Query: 251 PRTLYLALTGF-------RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 303
P + F R S ++T P T E ++ ++ E D +
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE-DFDAAI 249
Query: 304 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 363
+V + LE + L++ G + A +G E+T+E+ G + ILI T++
Sbjct: 250 IFVRTKNATLEVA-EALERN--GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306
Query: 364 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 410
GLD++ + ++ D+ + ++++ GR GRA + A LF ++
Sbjct: 307 RGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENR 352
>RGD|1309580 [details] [associations]
symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 51"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309580 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:HIDQTPG OrthoDB:EOG4JM7PM IPI:IPI00371200
Ensembl:ENSRNOT00000056729 UCSC:RGD:1309580 ArrayExpress:D3ZQ94
Uniprot:D3ZQ94
Length = 635
Score = 117 (46.2 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
L QAF GV +A + Q ++ +++F QG I++LI T+ G+D+Q +I D
Sbjct: 492 LAQAFGGVSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATARGIDVQGVELVINYDA 551
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAY 404
Q+ ++++ GR RA K A+
Sbjct: 552 PQYLRTYVHRV-GRTARAGKTGQAF 575
Score = 65 (27.9 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 111 PMDRLICGDVGFGKTEV----ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 166
P D + G GKT ++A+ V +A+V+ PT LA+Q VS+ F+ Y
Sbjct: 217 PSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKELAQQ----VSKVFNIY 272
Query: 167 PD---IKVGLLSRFQSKAEKEEHL 187
D ++V L++ +S A+++E L
Sbjct: 273 TDTTPLRVALVTGQKSLAKEQESL 296
>MGI|MGI:1916913 [details] [associations]
symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 51"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1916913 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
KO:K14807 OMA:HIDQTPG GeneTree:ENSGT00550000075141 CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 OrthoDB:EOG4JM7PM
EMBL:AK152599 EMBL:BC060646 IPI:IPI00396728 RefSeq:NP_081432.2
UniGene:Mm.392735 UniGene:Mm.5267 ProteinModelPortal:Q6P9R1
SMR:Q6P9R1 PhosphoSite:Q6P9R1 PaxDb:Q6P9R1 PRIDE:Q6P9R1
Ensembl:ENSMUST00000031478 GeneID:69663 KEGG:mmu:69663
UCSC:uc008yre.2 InParanoid:Q6P9R1 ChiTaRS:DDX51 NextBio:330022
Bgee:Q6P9R1 CleanEx:MM_DDX51 Genevestigator:Q6P9R1
GermOnline:ENSMUSG00000029504 Uniprot:Q6P9R1
Length = 639
Score = 117 (46.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
L QAF GV +A + Q ++ +++F QG I++LI T+ G+D+Q +I D
Sbjct: 496 LAQAFGGVSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATARGIDVQGVELVINYDA 555
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAY 404
Q+ ++++ GR RA K A+
Sbjct: 556 PQYLRTYVHRV-GRTARAGKTGQAF 579
Score = 65 (27.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 111 PMDRLICGDVGFGKTEV----ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 166
P D + G GKT ++A+ V +A+V+ PT LA+Q VS+ F+ Y
Sbjct: 221 PSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKELAQQ----VSKVFNIY 276
Query: 167 PD---IKVGLLSRFQSKAEKEEHL 187
D ++V L++ +S A+++E L
Sbjct: 277 TDTTPLRVALVTGQKSLAKEQESL 300
>UNIPROTKB|F1MGC9 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 OMA:HIDQTPG GeneTree:ENSGT00550000075141
EMBL:DAAA02044956 IPI:IPI01003566 ProteinModelPortal:F1MGC9
Ensembl:ENSBTAT00000022893 Uniprot:F1MGC9
Length = 546
Score = 115 (45.5 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
L QAF GV +A + Q + +++F QG I++LI T+ + G+D+Q ++ D
Sbjct: 403 LVQAFGGVTVAEFSSRYGPGQRKSILKQFEQGKIQLLISTDAMARGIDVQGVQLVVNYDA 462
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAY 404
Q+ ++++ GR RA K A+
Sbjct: 463 PQYLRTYVHRV-GRTARAGKSGQAF 486
Score = 64 (27.6 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 111 PMDRLICGDVGFGKTEV----ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 166
P D + G GKT ++A+ +A+V+ PT LA+Q VS+ F+ Y
Sbjct: 126 PSDLCVSAPTGSGKTLAFVIPVVQALLHRAVCQVRALVVLPTKELAQQ----VSKVFNVY 181
Query: 167 PD---IKVGLLSRFQSKAEKEEHL 187
D ++V L++ +S A+++E L
Sbjct: 182 TDATPLRVALITGQKSLAKEQESL 205
>UNIPROTKB|Q81X23 [details] [associations]
symbol:comFA "ComF operon protein 1" species:1392 "Bacillus
anthracis" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 RefSeq:NP_847594.1 RefSeq:YP_022088.1
ProteinModelPortal:Q81X23 DNASU:1085024
EnsemblBacteria:EBBACT00000011980 EnsemblBacteria:EBBACT00000014569
GeneID:1085024 GeneID:2818579 KEGG:ban:BA_5426 KEGG:bar:GBAA_5426
PATRIC:18788476 HOGENOM:HOG000075153 KO:K02240 OMA:KTEMLFP
ProtClustDB:CLSK887960 BioCyc:BANT261594:GJ7F-5293-MONOMER
Uniprot:Q81X23
Length = 449
Score = 131 (51.2 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 75/333 (22%), Positives = 142/333 (42%)
Query: 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 153
Q+ A V + ++E+ +CG GKTE+ I + G++ + P +
Sbjct: 111 QELAAQGVIEAIKQKESFFIWAVCGA---GKTEMLFYGIEEALQKGERVCIATPRTDVV- 166
Query: 154 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNN 213
++V +P I V L EK+ L ++ TH LL Y
Sbjct: 167 --LELVPRLQEVFPSINVAALYGGSVDREKDAAL---------VVATTHQLLR---YYRA 212
Query: 214 LGLLVVDEEQRFG--VKQKEKIA---SFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
+++VDE F V Q + A + K + L+ATP + TG + ++S
Sbjct: 213 FHVMIVDEIDAFPYHVDQMLQYAVQQAMKEKAARIYLTATPDEKWKRNFRTGKQKGIIVS 272
Query: 269 TP---PPERLPIKTHLSAFSK----EKV----ISAIKYELDRGGQVFYVLPRIKGLEEPM 317
P +P+ + + K +K+ + +K +++ +F +P ++ +EE
Sbjct: 273 GRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMYVNKKYPIFLFVPHVRYIEE-- 330
Query: 318 DFLQQAFPGVDIAI--AHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 375
+ G+D I H + R+ E +E F +G I +L+ T I+E G+ ++N +
Sbjct: 331 --IGLLLKGLDHRIDGVHAEDPMRK--EKVEAFRKGDIPLLVTTTILERGVIVKNLQVAV 386
Query: 376 VQDVQQ-FGLAQLYQLRGRVGRADKEAHAYLFY 407
+ ++ F + L Q+ GR GR+ +E + + Y
Sbjct: 387 LGAEEEIFSESALVQIAGRAGRSFEEPYGEVVY 419
>TIGR_CMR|BA_5426 [details] [associations]
symbol:BA_5426 "comF operon protein 1" species:198094
"Bacillus anthracis str. Ames" [GO:0003674 "molecular_function"
evidence=ND] [GO:0030420 "establishment of competence for
transformation" evidence=ISS] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 RefSeq:NP_847594.1
RefSeq:YP_022088.1 ProteinModelPortal:Q81X23 DNASU:1085024
EnsemblBacteria:EBBACT00000011980 EnsemblBacteria:EBBACT00000014569
GeneID:1085024 GeneID:2818579 KEGG:ban:BA_5426 KEGG:bar:GBAA_5426
PATRIC:18788476 HOGENOM:HOG000075153 KO:K02240 OMA:KTEMLFP
ProtClustDB:CLSK887960 BioCyc:BANT261594:GJ7F-5293-MONOMER
Uniprot:Q81X23
Length = 449
Score = 131 (51.2 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 75/333 (22%), Positives = 142/333 (42%)
Query: 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 153
Q+ A V + ++E+ +CG GKTE+ I + G++ + P +
Sbjct: 111 QELAAQGVIEAIKQKESFFIWAVCGA---GKTEMLFYGIEEALQKGERVCIATPRTDVV- 166
Query: 154 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNN 213
++V +P I V L EK+ L ++ TH LL Y
Sbjct: 167 --LELVPRLQEVFPSINVAALYGGSVDREKDAAL---------VVATTHQLLR---YYRA 212
Query: 214 LGLLVVDEEQRFG--VKQKEKIA---SFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
+++VDE F V Q + A + K + L+ATP + TG + ++S
Sbjct: 213 FHVMIVDEIDAFPYHVDQMLQYAVQQAMKEKAARIYLTATPDEKWKRNFRTGKQKGIIVS 272
Query: 269 TP---PPERLPIKTHLSAFSK----EKV----ISAIKYELDRGGQVFYVLPRIKGLEEPM 317
P +P+ + + K +K+ + +K +++ +F +P ++ +EE
Sbjct: 273 GRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMYVNKKYPIFLFVPHVRYIEE-- 330
Query: 318 DFLQQAFPGVDIAI--AHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 375
+ G+D I H + R+ E +E F +G I +L+ T I+E G+ ++N +
Sbjct: 331 --IGLLLKGLDHRIDGVHAEDPMRK--EKVEAFRKGDIPLLVTTTILERGVIVKNLQVAV 386
Query: 376 VQDVQQ-FGLAQLYQLRGRVGRADKEAHAYLFY 407
+ ++ F + L Q+ GR GR+ +E + + Y
Sbjct: 387 LGAEEEIFSESALVQIAGRAGRSFEEPYGEVVY 419
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 132 (51.5 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 78/311 (25%), Positives = 127/311 (40%)
Query: 121 GFGKTEV-ALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGL-LSRF 177
G GKT AL + V S Q +VLAPT LA Q V+E FS Y +
Sbjct: 53 GTGKTGAFALPLLNKVTSQTTPQILVLAPTRELAVQ----VAEAFSSYAKFMKNFHVLPI 108
Query: 178 QSKAEKEEHLDMIKHGHLNIIVGT------HSLLGSRVVYNNLGLLVVDEEQ---RFG-V 227
++ L+ +K G +IVGT H G+ + L LV+DE + G +
Sbjct: 109 YGGQSMQQQLNALKRGP-QVIVGTPGRVMDHMRRGT-LKLETLQALVLDEADEMLKMGFI 166
Query: 228 KQKEKIASFKISVDVLTLSATPIPRTLY-LALTGFRDASLISTPPPERL--PIKTHLSAF 284
E I L L + +P + +A ++A+ IS I+
Sbjct: 167 DDIEWILEHTPPQRQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQV 226
Query: 285 SKEKVISAIKYELD---RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQL 341
S+ + A+ L+ G + +V R E + L+ G + HG +
Sbjct: 227 SQHNKLEALVRVLEVENTEGIIIFVRTR-NSCVELAEKLEAR--GYASSPLHGDMNQQAR 283
Query: 342 EETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA 401
E +E+ G + ILI T++ GLD++ ++ D+ A ++++ GR GRA +
Sbjct: 284 ERAVEQLKNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRI-GRTGRAGRTG 342
Query: 402 HAYLFYPDKSL 412
A LF + +
Sbjct: 343 MAILFVTSREM 353
>GENEDB_PFALCIPARUM|PF14_0655 [details] [associations]
symbol:PF14_0655 "RNA helicase-1, putative"
species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 129 (50.5 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 71/285 (24%), Positives = 125/285 (43%)
Query: 141 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 200
QA++LAPT LA+Q VV Y +KV + +E+ +D +K G ++++VG
Sbjct: 93 QALILAPTRELAQQIQKVVLA-LGDY--LKVKCHACVGGTVVRED-IDKLKQG-VHMVVG 147
Query: 201 T----HSLLGSRVV-YNNLGLLVVDEEQRF---GVKQK--EKIASFKISVDVLTLSATPI 250
T + ++ R + + L L ++DE G K + E + V SAT +
Sbjct: 148 TPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVALFSAT-M 206
Query: 251 PRTLYLALTGF-RDASLISTPPPERL--PIKTHLSAFSKEK-VISAI--KYE-LDRGGQV 303
P+ + T F RD I E I+ A KE+ + + YE L +
Sbjct: 207 PQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDLYETLTITQSI 266
Query: 304 FYVLPRIKGLEEPMDFLQQAFPG--VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI 361
Y R K +D L Q ++ HG + + M +F G+ ++L+ T++
Sbjct: 267 IYCNTRKK-----VDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDL 321
Query: 362 VESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLF 406
+ G+D+Q + +I D+ ++++ GR GR ++ A F
Sbjct: 322 LARGIDVQQVSLVINYDLPASPDTYIHRI-GRSGRFGRKGVAINF 365
>UNIPROTKB|Q8IKF0 [details] [associations]
symbol:H45 "Helicase 45" species:36329 "Plasmodium
falciparum 3D7" [GO:0006446 "regulation of translational
initiation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 129 (50.5 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 71/285 (24%), Positives = 125/285 (43%)
Query: 141 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 200
QA++LAPT LA+Q VV Y +KV + +E+ +D +K G ++++VG
Sbjct: 93 QALILAPTRELAQQIQKVVLA-LGDY--LKVKCHACVGGTVVRED-IDKLKQG-VHMVVG 147
Query: 201 T----HSLLGSRVV-YNNLGLLVVDEEQRF---GVKQK--EKIASFKISVDVLTLSATPI 250
T + ++ R + + L L ++DE G K + E + V SAT +
Sbjct: 148 TPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVALFSAT-M 206
Query: 251 PRTLYLALTGF-RDASLISTPPPERL--PIKTHLSAFSKEK-VISAI--KYE-LDRGGQV 303
P+ + T F RD I E I+ A KE+ + + YE L +
Sbjct: 207 PQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDLYETLTITQSI 266
Query: 304 FYVLPRIKGLEEPMDFLQQAFPG--VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI 361
Y R K +D L Q ++ HG + + M +F G+ ++L+ T++
Sbjct: 267 IYCNTRKK-----VDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDL 321
Query: 362 VESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLF 406
+ G+D+Q + +I D+ ++++ GR GR ++ A F
Sbjct: 322 LARGIDVQQVSLVINYDLPASPDTYIHRI-GRSGRFGRKGVAINF 365
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 134 (52.2 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 71/291 (24%), Positives = 121/291 (41%)
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G A+ LAPT LA Q + + + ++SKY +K +L K++ +K G II
Sbjct: 378 GPIALFLAPTRELAHQIY-LETLKYSKYFKLKTTVL---YGGVSKQQQCKELKAG-CEII 432
Query: 199 VGTHSLLGSRVVY-----NNLGLLVVDEEQR-----FGVKQKEKIASFKISVDVLTLSAT 248
V T L + N + LV+DE + FG + + + L SAT
Sbjct: 433 VATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSAT 492
Query: 249 PIPRTLYLALTGFRDA-----SLISTPPPERLPIKTHLSAFSKEK--VISAIKYELDRGG 301
P A T D +I + + I L + S + + + + L +G
Sbjct: 493 FKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLSQGS 552
Query: 302 QVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI 361
+ +V ++ +E+ L + F G HG + + +T++ F +G I ILI T++
Sbjct: 553 VLIFVSTKV-AVEQLSSNLTK-F-GFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDV 609
Query: 362 VESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 412
GLDI ++ D + + +++ GR GRA AY K +
Sbjct: 610 AARGLDIPLIKNVVNYDTSRDIESHTHRI-GRTGRAGNTGVAYTLITPKDI 659
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 131 (51.2 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 66/297 (22%), Positives = 129/297 (43%)
Query: 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKY-----PDIKVGLLSRFQSKAEKEEHLDMIK 191
S G +++ P+ LA+Q FD++ E F P+++ GL E+ + ++
Sbjct: 264 SEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKD---VR 320
Query: 192 HGHLNIIVGTHSLLGSRVVYNNLGL-----LVVDEEQRF-GVKQKEKIAS----FKISVD 241
G ++I+V T L + + L LV+DE R + +++I S FK
Sbjct: 321 DG-IHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQ 379
Query: 242 VLTLSATPIPRTL-YLALTGFRDASLIST--PPPERLPIKTHLSAF-SKEKVISAIKYEL 297
L SAT +PR + + A + +++ L + L S+ K++ ++
Sbjct: 380 TLLFSAT-MPRKIQFFAKSALVKPIVVNVGRAGAASLNVLQELEFVRSENKLVRVLECLQ 438
Query: 298 DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILI 357
+V + ++ ++L GV++A HG + +E F + +L+
Sbjct: 439 KTSPKVLIFAEKKVDVDNIYEYL--LVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLV 496
Query: 358 CTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLS 414
T++ GLD Q +I D+ + ++++ GR GR+ ++ A F KS +S
Sbjct: 497 ATDVASKGLDFQGIEHVINFDMPEDIENYVHRI-GRTGRSGRKGLATTFINKKSEMS 552
>WB|WBGene00011032 [details] [associations]
symbol:R05D11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG EMBL:Z75546 PIR:T23922 RefSeq:NP_492326.1
ProteinModelPortal:Q21736 SMR:Q21736 STRING:Q21736 PaxDb:Q21736
EnsemblMetazoa:R05D11.4.1 EnsemblMetazoa:R05D11.4.2 GeneID:172651
KEGG:cel:CELE_R05D11.4 UCSC:R05D11.4 CTD:172651 WormBase:R05D11.4
InParanoid:Q21736 NextBio:876429 Uniprot:Q21736
Length = 581
Score = 133 (51.9 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 28/86 (32%), Positives = 52/86 (60%)
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
VD +I G+ ++ +ETME+F +G I +L+CT ++ GLD+ + +I D+ ++
Sbjct: 402 VD-SINSGKS-DKERDETMERFRRGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSY 459
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSL 412
++++ GR GRA K HA ++ D +
Sbjct: 460 IHRV-GRTGRAGKSGHAVTYFTDADM 484
Score = 43 (20.2 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 153 KQHFDVVSERFSKYPDIKVGLLSRFQSKAEKE 184
K+ + E +Y +++ ++ + +SK EK+
Sbjct: 29 KELSTITEESLRRYDELREKMIGKVESKIEKK 60
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 127 (49.8 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 76/310 (24%), Positives = 142/310 (45%)
Query: 121 GFGKTEV----ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR 176
G GKT AL+ + V A QA+++APT LA+Q VV + +I+
Sbjct: 72 GTGKTATFSISALQKLDPNVKAC-QALIVAPTRELAQQIQKVVIA-IGDFMNIQCHAC-- 127
Query: 177 FQSKAEKEEHLDMIKHGHLNIIVGT----HSLLGSRVVYNN-LGLLVVDE-EQRFGVKQK 230
A +++ ++ ++ G I+VGT H ++ RV+ + + + ++DE ++
Sbjct: 128 IGGTAVRDD-MNALREGP-QIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFT 185
Query: 231 EKIAS-FKI---SVDVLTLSATPIPRTLYLALTGF-RDASLISTPPPERL--PIKTHLSA 283
E+I F++ S V+ LSAT +P+ + T F RD I E IK A
Sbjct: 186 EQIYDIFQLLPQSTQVVLLSAT-MPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIA 244
Query: 284 FSKEKVISAIKYELDRGGQVFYVLPRIKGL-----EEPMDFLQQAFPGVDIAIA--HGQQ 336
KE+ ++LD ++ + + + +D+L D ++ HG
Sbjct: 245 VEKEE------WKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDM 298
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
Q + M++F G+ ++LI T+++ G+D+Q + +I D+ ++++ GR GR
Sbjct: 299 EQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRI-GRGGR 357
Query: 397 ADKEAHAYLF 406
++ A F
Sbjct: 358 FGRKGVAINF 367
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 127 (49.8 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 80/318 (25%), Positives = 138/318 (43%)
Query: 121 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRF 177
G GKT AI + QA++LAPT LA Q VV +Y +KV +
Sbjct: 77 GTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMA-LGEY--MKVHSHACI 133
Query: 178 QSKAEKEEHLDMIKHGHLNIIVGT----HSLLGSRVVYNN-LGLLVVDE-EQRFGVKQKE 231
+E+ +++ G +++VGT + ++ +V+ + L V+DE ++ K+
Sbjct: 134 GGTNVRED-ARILESG-CHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKD 191
Query: 232 KIAS-FKI---SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL--PIKTHLSAFS 285
+I FK+ V V+ LSAT P L ++ RD I E IK
Sbjct: 192 QIQDVFKMLPPDVQVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVK 251
Query: 286 KEK----VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ--AFPGVDIAIAHGQQYSR 339
+E + + L V + R K +D L Q + ++ HG R
Sbjct: 252 QENWKLGTLCDLYDTLSITQSVIFCNTRRK-----VDQLTQEMSIHNFTVSAMHGDMEQR 306
Query: 340 QLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK 399
E M++F G+ ++LI T+++ G+D+Q + +I D+ ++++ GR GR +
Sbjct: 307 DREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRI-GRGGRFGR 365
Query: 400 EAHAYLFYPD--KSLLSD 415
+ A F D + +L D
Sbjct: 366 KGVAINFITDDDRRILKD 383
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 131 (51.2 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 90/349 (25%), Positives = 144/349 (41%)
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVL 145
PTP Q+K + R D + G GKT L +F + A G +A++L
Sbjct: 59 PTPIQRKTIPVILRG-------RDVVAMARTGSGKTACFLLPMFERLKAPSPSGARALIL 111
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
+PT LA Q E K+ +K L+ +K E H + +II+ T L
Sbjct: 112 SPTRELALQTLKFTKE-LGKFTGLKTALVLG----GDKMEDQFAALHENPDIIIATPGRL 166
Query: 206 GSRVVYNNLGL-----LVVDEEQR-----FGVKQKEKIASFKISVDVLTLSATPIPRTLY 255
V NL L +V DE R F + +E +A S + SAT +P+ L
Sbjct: 167 VHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEILARLPGSHQTVLFSAT-LPKLLV 225
Query: 256 -LALTGFRDASLISTPPPERLPIKTHLSAF---SKEK---VISAIKYELDRGGQ-VFYVL 307
A G + LI +L + L+ F +K ++ ++ + Q V +V
Sbjct: 226 EFARAGLTEPMLIRLDVESKLSEQLKLAFFHVRGDDKPAVLLHLLRCVVKPQDQTVVFVA 285
Query: 308 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEET-----MEKFAQGAIKILICTNIV 362
+ ++L++ I H YS L++T + KFA G ++L+ T++
Sbjct: 286 TK-----HHTEYLKELLTSQGICCTH--IYS-SLDQTARKINIAKFAHGKCQVLLVTDVA 337
Query: 363 ESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY-LFYPDK 410
GLDI + +I L+++ GRV RA + AY L PD+
Sbjct: 338 ARGLDIPMLDNVINYSFPAKSKLFLHRV-GRVARAGRSGTAYSLVAPDE 385
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 128 (50.1 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 83/301 (27%), Positives = 130/301 (43%)
Query: 141 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 200
QA+V+APT LA Q VSE K K + + + +K NIIVG
Sbjct: 73 QAIVIAPTRELAIQ----VSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNP-NIIVG 127
Query: 201 THSLL----GSRVV-YNNLGLLVVDE-EQRFGVKQKEKIASFKISV----DVLTLSATPI 250
T L R + NN+ +V+DE ++ + + I S +V L SAT +
Sbjct: 128 TPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSAT-M 186
Query: 251 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-YELD-RGGQVFYVLP 308
P + R A T P E + +K +KE +S I+ + L+ + + F L
Sbjct: 187 PAPIK------RIAERFMTEP-EHVKVK------AKEMTVSNIQQFYLEVQERKKFDTLT 233
Query: 309 RIKGLEEP------------MDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIK 354
R+ ++ P +D L +A G HG + + KF +GAI+
Sbjct: 234 RLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIE 293
Query: 355 ILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY-P-DKSL 412
+L+ T++ GLDI + DV Q + ++++ GR GRA K A F P +KS+
Sbjct: 294 VLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRI-GRTGRAGKTGMAMTFITPREKSM 352
Query: 413 L 413
L
Sbjct: 353 L 353
>TAIR|locus:2148027 [details] [associations]
symbol:UAP56b "homolog of human UAP56 b" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005618
"cell wall" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002688
GO:GO:0005618 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
UniGene:At.49007 UniGene:At.73904 GeneID:830990 KEGG:ath:AT5G11200
OMA:LECVINY IPI:IPI00938969 RefSeq:NP_001154706.1
ProteinModelPortal:F4JWF6 SMR:F4JWF6 PRIDE:F4JWF6
EnsemblPlants:AT5G11200.2 Uniprot:F4JWF6
Length = 486
Score = 97 (39.2 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 34/131 (25%), Positives = 57/131 (43%)
Query: 281 LSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQ 340
LS K + ++ + LD V +V + E ++ FP I I G +
Sbjct: 329 LSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPS--ICIHSGMSQEER 386
Query: 341 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 400
L + F +G +IL+ T++V G+DI+ N +I D+ L+++ GR GR +
Sbjct: 387 LTR-YKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRV-GRAGRFGTK 444
Query: 401 AHAYLFYPDKS 411
A F S
Sbjct: 445 GLAITFVASAS 455
Score = 77 (32.2 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 35/97 (36%), Positives = 50/97 (51%)
Query: 112 MDRLIC-GDVGFGKTEVALRAIFCVV--SAGK-QAMVLAPTIVLAKQHFDVVSE--RFSK 165
MD +IC G GKT V + + + S G+ A+VL T LA Q + +E RFS
Sbjct: 84 MD-VICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQ---ICNEFVRFST 139
Query: 166 Y-PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
Y PD KV + F + H D++K+ +I+VGT
Sbjct: 140 YLPDTKVSV---FYGGVNIKIHKDLLKNECPHIVVGT 173
>UNIPROTKB|Q4K4K3 [details] [associations]
symbol:dbpA "ATP-independent RNA helicase DbpA"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 OMA:THEKSTI RefSeq:YP_262830.1
ProteinModelPortal:Q4K4K3 STRING:Q4K4K3 GeneID:3480144
KEGG:pfl:PFL_5772 PATRIC:19881049
BioCyc:PFLU220664:GIX8-5812-MONOMER Uniprot:Q4K4K3
Length = 461
Score = 127 (49.8 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 79/311 (25%), Positives = 129/311 (41%)
Query: 112 MDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAKQHFDVVSERFSKYPD 168
MD + G GKT + ++ G QA+V+ PT LA Q V R ++ D
Sbjct: 44 MDLIAQAKTGSGKTAAFGIGLLNPINPRYFGCQALVICPTRELADQVAKEV-RRLARAED 102
Query: 169 -IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT------HSLLGSRVVYNNLGLLVVDE 221
IKV L S + + ++HG +IIVGT H GS +V + L LV+DE
Sbjct: 103 NIKVLTLCGGVSFGPQ---IASLEHG-AHIIVGTPGRIQQHLRKGS-LVLDGLNTLVLDE 157
Query: 222 EQRF---GVKQ--KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPP-PERL 275
R G ++ I L SAT LA RD + +
Sbjct: 158 ADRMLDMGFYDAIEDIIEKTPSRRQTLLFSATYPVGIKQLASKFMRDPQTVKAEAFHDDT 217
Query: 276 PIKTHLSAFSKEKVISAIKYELDR---GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 332
I+ S E+ +SA+ L V + + + ++E +D L G+
Sbjct: 218 QIEQRFYEISPEERMSAVTKVLHHFRPASCVAFCFTK-QQVQETVDHLTAK--GISAVGL 274
Query: 333 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRG 392
HG R ++ + FA + +L+ T++ GLDI + +I ++ + ++++ G
Sbjct: 275 HGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDALDMVINVELARDSEIHIHRV-G 333
Query: 393 RVGRADKEAHA 403
R GRA ++ A
Sbjct: 334 RTGRAGEKGIA 344
>TIGR_CMR|CPS_4366 [details] [associations]
symbol:CPS_4366 "primosomal protein N'" species:167879
"Colwellia psychrerythraea 34H" [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0003688 "DNA replication origin binding"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005259 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1198 HOGENOM:HOG000037413
KO:K04066 OMA:ERQTMQL TIGRFAMs:TIGR00595 RefSeq:YP_271015.1
ProteinModelPortal:Q47W07 STRING:Q47W07 DNASU:3519516
GeneID:3519516 KEGG:cps:CPS_4366 PATRIC:21471577
BioCyc:CPSY167879:GI48-4375-MONOMER Uniprot:Q47W07
Length = 736
Score = 121 (47.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 40/147 (27%), Positives = 70/147 (47%)
Query: 115 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 174
LI G G GKTEV L+++ V++ +Q +V+ P I L Q + +RF+ + + L
Sbjct: 229 LIDGVTGSGKTEVYLQSMEEVLANNQQVLVIVPEIGLTPQTLNRFEQRFN----VPIALH 284
Query: 175 SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIA 234
+ E+ + G I++GT S + + + + LGL+++DEE +KQ++
Sbjct: 285 HSGLNDKERLATWLSAQQGSAAIVIGTRSAVFTPL--HRLGLIIIDEEHDSSLKQQDSFR 342
Query: 235 SFKISVDVLTLSATPIPRTLYLALTGF 261
+ +L IP L A F
Sbjct: 343 YHCRDMAILRARQLNIPIVLGTATPSF 369
Score = 56 (24.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 30/125 (24%), Positives = 52/125 (41%)
Query: 306 VLPRIKGLEEPMDFLQQAFPGVDIA-IAHGQQYSR-QLEETMEKFAQGAIKILICTNIVE 363
+ P +G E+ L++ FP I I + +L + +++ ++L+ T ++
Sbjct: 492 IAPLGQGTEQLESRLEELFPESSIVRIDRDSTRKKGELAKLLQEVTDKKHQLLVGTQMLA 551
Query: 364 SGLDIQNANTIIVQDVQ----QFG------LAQLY-QLRGRVGRADKEAHAYLF--YPDK 410
G + + V DV F +AQL Q+ GR GRA K + + D
Sbjct: 552 KGHHFPDVTLVAVLDVDGALFSFDFRASEQMAQLLIQVAGRAGRASKPGKVLVQSNFVDH 611
Query: 411 SLLSD 415
LL D
Sbjct: 612 PLLQD 616
>UNIPROTKB|E2R5R1 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 KO:K14807 OMA:HIDQTPG GeneTree:ENSGT00550000075141
CTD:317781 EMBL:AAEX03014583 RefSeq:XP_543351.2
Ensembl:ENSCAFT00000010222 GeneID:486226 KEGG:cfa:486226
Uniprot:E2R5R1
Length = 631
Score = 105 (42.0 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
L QAF GV A + Q + +++F QG I++LI T+ + G+D+Q +I D
Sbjct: 488 LVQAFGGVAAAEFSSRCRPGQRKVVLKQFEQGKIQLLISTDAMARGIDVQGVQLVINYDA 547
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAY 404
Q+ ++++ GR RA + A+
Sbjct: 548 PQYLRTYVHRV-GRTARAGRTGQAF 571
Score = 71 (30.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 111 PMDRLICGDVGFGKTEV----ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 166
P D + G GKT ++A+ C +A+V+ PT LA+Q VS+ F+ Y
Sbjct: 213 PSDLCVSAPTGSGKTLAFVIPVVQALLCRAVCQVRALVVLPTKELAQQ----VSKVFNIY 268
Query: 167 PD---IKVGLLSRFQSKAEKEEHL 187
D ++V L++ +S +++E L
Sbjct: 269 TDATPLRVALITGQKSLVKEQESL 292
>UNIPROTKB|F1SUG7 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043330 "response to exogenous dsRNA" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
OMA:EILCVAY EMBL:CT737244 EMBL:CU468175 Ensembl:ENSSSCT00000011217
Uniprot:F1SUG7
Length = 855
Score = 130 (50.8 bits), Expect = 0.00011, P = 0.00011
Identities = 83/298 (27%), Positives = 124/298 (41%)
Query: 141 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGL-LSRFQSKAEKEEHLDMIKHGHLNIIV 199
Q +VLAPT LA Q VS FS DI L ++ F +D +++G ++I+V
Sbjct: 334 QVLVLAPTRELASQ----VSRDFS---DITKKLAVACFYGGTPYGGQIDRMRNG-IDILV 385
Query: 200 GTHSLLGSRVVYNNLGL-----LVVDE-EQRFGV---KQKEKI---ASFKISVD---VLT 244
GT + + N L L +V+DE +Q + Q E+I A K S D L
Sbjct: 386 GTPGRIKDHLQNNKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLL 445
Query: 245 LSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-YELDRG--- 300
SAT P +Y + ++ + + KT +A + E + AIK + R
Sbjct: 446 FSAT-CPHWVYNVAKKYMKSTYEQV---DLIGKKTQKTAITVEHL--AIKCHWTQRAAVI 499
Query: 301 GQVFYVLPRIKGL--------EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA 352
G V V +G +E + Q A D HG +Q E T++ F G
Sbjct: 500 GDVIRVYSGYQGRTIIFCETKKEAQELSQNAAVRQDAQSLHGDIPQKQREITLKGFRNGD 559
Query: 353 IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 410
+L+ TN+ GLDI + ++VQ + GR GRA + FY K
Sbjct: 560 FGVLVATNVAARGLDIPEVD-LVVQSCPPKDVESYIHRSGRTGRAGRTGICICFYQHK 616
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 130 (50.8 bits), Expect = 0.00011, P = 0.00011
Identities = 89/345 (25%), Positives = 137/345 (39%)
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMV 144
PTP Q+K + V D D + G GKT L +F + A G +A++
Sbjct: 118 PTPIQRKT-IPVILD------GKDVVAMARTGSGKTACFLLPMFERLKARSAQTGARALI 170
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
L+PT LA Q E K+ +K L+ +K E H + +II+ T
Sbjct: 171 LSPTRELALQTMKFTKE-LGKFTGLKTALILG----GDKMEDQFAALHENPDIIIATPGR 225
Query: 205 LGSRVVYNNLGL-----LVVDEEQR-----FGVKQKEKIASFKISVDVLTLSATPIPRTL 254
L V NL L +V DE R F + +E I + SAT +P+ L
Sbjct: 226 LVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFSAT-LPKLL 284
Query: 255 Y-LALTGFRDASLISTPPPERL--PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 311
A G + LI +L +KT ++ + + Y L +
Sbjct: 285 VEFARAGLTEPVLIRLDVDSKLNEQLKTSFLLVREDTKAAVLLYLLQNVVRPQDQTVVFV 344
Query: 312 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEET-----MEKFAQGAIKILICTNIVESGL 366
+ ++L + G ++ AH YS L++T + KF LI T++ GL
Sbjct: 345 ATKHHAEYLTELLMGQGVSCAH--IYSA-LDQTARKINLAKFTHNKCSTLIVTDLAARGL 401
Query: 367 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY-LFYPDK 410
DI + +I G L+++ GRV RA + AY L PD+
Sbjct: 402 DIPLLDNVINYSFPAKGKLFLHRV-GRVARAGRSGTAYSLVAPDE 445
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 74/309 (23%), Positives = 130/309 (42%)
Query: 121 GFGKTEVALRAIFCVV---SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRF 177
G GKT + I + S+ QA+++APT LA Q + + + DI V +
Sbjct: 52 GTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGG 111
Query: 178 QSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRVVYNNLGLLVVDEEQR---FGVKQ 229
Q A++ L +K G+ +I+V T L + +NL +V+DE + FG
Sbjct: 112 QDVAQQ---LRKLK-GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLY 167
Query: 230 --KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTH----LSA 283
++ + S + SAT IP+ + + D + E + + T +
Sbjct: 168 DIEDILDETPGSKQTMLFSAT-IPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET 226
Query: 284 FSKEKVISAIKYELDRGGQVFYVL-PRIKGLEEPM-DFLQQAFPGVDIAIAHGQQYSRQL 341
+ K A+++ +DR V+ R K + D L+ G + A HG +
Sbjct: 227 TDRAKP-DALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL--GYNCAELHGDIPQAKR 283
Query: 342 EETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA 401
E M+ F + I+ LI T++ GLD+ + D+ + + ++++ GR GRA
Sbjct: 284 ERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRI-GRTGRAGGSG 342
Query: 402 HAYLFYPDK 410
A F K
Sbjct: 343 LAITFVAAK 351
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 74/309 (23%), Positives = 130/309 (42%)
Query: 121 GFGKTEVALRAIFCVV---SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRF 177
G GKT + I + S+ QA+++APT LA Q + + + DI V +
Sbjct: 52 GTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGG 111
Query: 178 QSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRVVYNNLGLLVVDEEQR---FGVKQ 229
Q A++ L +K G+ +I+V T L + +NL +V+DE + FG
Sbjct: 112 QDVAQQ---LRKLK-GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLY 167
Query: 230 --KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTH----LSA 283
++ + S + SAT IP+ + + D + E + + T +
Sbjct: 168 DIEDILDETPGSKQTMLFSAT-IPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET 226
Query: 284 FSKEKVISAIKYELDRGGQVFYVL-PRIKGLEEPM-DFLQQAFPGVDIAIAHGQQYSRQL 341
+ K A+++ +DR V+ R K + D L+ G + A HG +
Sbjct: 227 TDRAKP-DALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL--GYNCAELHGDIPQAKR 283
Query: 342 EETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA 401
E M+ F + I+ LI T++ GLD+ + D+ + + ++++ GR GRA
Sbjct: 284 ERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRI-GRTGRAGGSG 342
Query: 402 HAYLFYPDK 410
A F K
Sbjct: 343 LAITFVAAK 351
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 126 (49.4 bits), Expect = 0.00013, P = 0.00013
Identities = 75/311 (24%), Positives = 127/311 (40%)
Query: 118 GDVGFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 174
G G GKT + + + Q +VL PT LA Q + ++KV L
Sbjct: 45 GKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTL 104
Query: 175 SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRVVYNNLGLLVVDEEQRF---G 226
+ ++HG +IIVGT + +R+ +NL +LV+DE R G
Sbjct: 105 C---GGVPMGPQIGSLEHG-AHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMG 160
Query: 227 VK-QKEKIASFKISV-DVLTLSATPIPRTLY-LALTGFRDASLISTPPP-ERLPIKTHLS 282
+ Q + I L SAT P + +A + ++ E+ I+ H
Sbjct: 161 FQPQLDAIIEQSPRERQTLLFSAT-FPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFY 219
Query: 283 AFSKEKV-ISAIKYEL-DRGGQVFYVLPRIKG-LEEPMDFLQQAFPGVDIAIAHGQQYSR 339
+K + A++ L + + V K ++ D L+ G + HG R
Sbjct: 220 QLDDDKSRMQALQLLLLEHKPESAVVFCNTKRETQKVADELEGL--GFSVLALHGDLEQR 277
Query: 340 QLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK 399
+ET+ +FA + +L+ T++ GLDI + + V ++++ GR GRA
Sbjct: 278 DRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRI-GRTGRAGS 336
Query: 400 EAHAYLFYPDK 410
+ AY FY D+
Sbjct: 337 KGAAYTFYNDQ 347
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 126 (49.4 bits), Expect = 0.00013, P = 0.00013
Identities = 75/311 (24%), Positives = 127/311 (40%)
Query: 118 GDVGFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 174
G G GKT + + + Q +VL PT LA Q + ++KV L
Sbjct: 45 GKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTL 104
Query: 175 SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRVVYNNLGLLVVDEEQRF---G 226
+ ++HG +IIVGT + +R+ +NL +LV+DE R G
Sbjct: 105 C---GGVPMGPQIGSLEHG-AHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMG 160
Query: 227 VK-QKEKIASFKISV-DVLTLSATPIPRTLY-LALTGFRDASLISTPPP-ERLPIKTHLS 282
+ Q + I L SAT P + +A + ++ E+ I+ H
Sbjct: 161 FQPQLDAIIEQSPRERQTLLFSAT-FPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFY 219
Query: 283 AFSKEKV-ISAIKYEL-DRGGQVFYVLPRIKG-LEEPMDFLQQAFPGVDIAIAHGQQYSR 339
+K + A++ L + + V K ++ D L+ G + HG R
Sbjct: 220 QLDDDKSRMQALQLLLLEHKPESAVVFCNTKRETQKVADELEGL--GFSVLALHGDLEQR 277
Query: 340 QLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK 399
+ET+ +FA + +L+ T++ GLDI + + V ++++ GR GRA
Sbjct: 278 DRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRI-GRTGRAGS 336
Query: 400 EAHAYLFYPDK 410
+ AY FY D+
Sbjct: 337 KGAAYTFYNDQ 347
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 129 (50.5 bits), Expect = 0.00015, P = 0.00015
Identities = 89/345 (25%), Positives = 137/345 (39%)
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMV 144
PTP Q+K + V D D + G GKT L +F + A G +A++
Sbjct: 118 PTPIQRKT-IPVILD------GKDVVAMARTGSGKTACFLLPMFERLKARSAQTGARALI 170
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
L+PT LA Q E K+ +K L+ +K E H + +II+ T
Sbjct: 171 LSPTRELALQTMKFTKE-LGKFTGLKTALILG----GDKMEDQFAALHENPDIIIATPGR 225
Query: 205 LGSRVVYNNLGL-----LVVDEEQR-----FGVKQKEKIASFKISVDVLTLSATPIPRTL 254
L V NL L +V DE R F + +E I + SAT +P+ L
Sbjct: 226 LVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFSAT-LPKLL 284
Query: 255 Y-LALTGFRDASLISTPPPERL--PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 311
A G + LI +L +KT ++ + + Y L +
Sbjct: 285 VEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVREDTKTAVLLYLLQNVVRPQDQNVVFV 344
Query: 312 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEET-----MEKFAQGAIKILICTNIVESGL 366
+ ++L + G ++ AH YS L++T + KF LI T++ GL
Sbjct: 345 ATKHHAEYLTELLTGQGVSCAH--IYSA-LDQTARKINLAKFTHNKCSTLIVTDLAARGL 401
Query: 367 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY-LFYPDK 410
DI + +I G L+++ GRV RA + AY L PD+
Sbjct: 402 DIPLLDNVINYSFPAKGKLFLHRV-GRVARAGRSGTAYSLVAPDE 445
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 128 (50.1 bits), Expect = 0.00016, P = 0.00016
Identities = 72/284 (25%), Positives = 126/284 (44%)
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G ++ APT LA Q F + +++FSK ++V + SK E+ + L K G I+
Sbjct: 301 GPIGVICAPTRELAHQIF-LEAKKFSKAYGLRVSAVYGGMSKHEQFKEL---KAG-CEIV 355
Query: 199 VGTHSLLGSRVVYNNLGL-----LVVDEEQR-FGVKQKEKIASF--KISVDVLTL--SAT 248
V T L + L + LV+DE R F + + ++ S +I D TL SAT
Sbjct: 356 VATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSAT 415
Query: 249 PIPRTLYLALTGFRDASLISTPPP----ERLPIKTHLSAFSKEKV---ISAIKYELDRGG 301
+ LA D ++ E + ++ EK+ + + +D G
Sbjct: 416 MPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGD 475
Query: 302 QVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI 361
+ + K + ++ Q +A HG + ET++KF G +LI T++
Sbjct: 476 VLVFASK--KATVDEIE-AQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDV 532
Query: 362 VESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA-DKEAHAY 404
GLDI++ T++ D+ + ++++ GR GRA D++ AY
Sbjct: 533 AARGLDIKSLKTVVNYDIAKDMDMHVHRI-GRTGRAGDRDGVAY 575
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 128 (50.1 bits), Expect = 0.00019, P = 0.00019
Identities = 72/285 (25%), Positives = 126/285 (44%)
Query: 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 196
+ G +A++++PT LA Q F VV E ++ ++ L + EE I H + +
Sbjct: 91 TTGIRALMVSPTRELALQTFKVVKE-LGRFTGLRCACLV---GGDQIEEQFSTI-HENPD 145
Query: 197 IIVGTHSLLGSRVVYNNLGL-----LVVDEEQRF---GVKQK--EKIASFKISVDVLTLS 246
I++ T L +V +L L +V DE R G + + E + S L S
Sbjct: 146 ILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTLLFS 205
Query: 247 ATPIPRTLY-LALTGFRDASLISTPPPERLPIKTHL---SAFSKEKVISAIKY--ELDRG 300
AT +P+ L A G D L+ E++ K + EK+ + + +DR
Sbjct: 206 AT-LPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLFALLHLCRRMDRE 264
Query: 301 G-QVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICT 359
Q +K +E + L +A G+D + + Q + + ++KF + IL+ T
Sbjct: 265 NKQTVVFCATMKHVEYVVGILHRA--GIDCSFVYSQLDATARKMNIQKFHEKQNNILVVT 322
Query: 360 NIVESGLDIQNANTIIVQDVQQFGLAQLYQLR-GRVGRADKEAHA 403
++ G+DI +T+I ++ A+L+ R GRV RA + A
Sbjct: 323 DVAARGVDIPLLDTVI--NLHFPPKAKLFVHRVGRVARAGRSGTA 365
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 123 (48.4 bits), Expect = 0.00021, P = 0.00021
Identities = 74/328 (22%), Positives = 139/328 (42%)
Query: 103 RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVV 159
R +T+ + D + G GKT + + K QA++L+PT LA Q VV
Sbjct: 52 RAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVV 111
Query: 160 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS----LLGSRVVYN-NL 214
+ Y ++ ++ K K++ M KHG + GT ++ +++ N+
Sbjct: 112 -KNLGDYMNVNAFAITG--GKTLKDDLKKMQKHG-CQAVSGTPGRVLDMIKKQMLQTRNV 167
Query: 215 GLLVVDE-----EQRFGVKQK--EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI 267
+LV+DE + G KQ+ + A + V+ +SAT L + D I
Sbjct: 168 QMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKI 227
Query: 268 STPPPE-RLP-IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK-----GLEEPMDFL 320
E L IK ++ KE+ ++ D ++ L + ++ +D+L
Sbjct: 228 LVKRDEISLEGIKQYVVNVDKEE------WKFDTLCDIYDSLTITQCVIFCNTKKKVDWL 281
Query: 321 QQAFPGVDIAIA--HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
Q + A+ HG + ++ M F G ++LI T++ G+D+Q + +I D
Sbjct: 282 SQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYD 341
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLF 406
+ + ++++ GR GR ++ A F
Sbjct: 342 LPEIIENYIHRI-GRSGRFGRKGVAINF 368
>ZFIN|ZDB-GENE-040927-28 [details] [associations]
symbol:ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
51" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040927-28 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
KO:K14807 EMBL:AY648772 IPI:IPI00500210 RefSeq:NP_001003864.1
UniGene:Dr.77952 ProteinModelPortal:Q6DRI7 STRING:Q6DRI7
PRIDE:Q6DRI7 GeneID:445387 KEGG:dre:445387 CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 InParanoid:Q6DRI7
OrthoDB:EOG4JM7PM NextBio:20832091 ArrayExpress:Q6DRI7
Uniprot:Q6DRI7
Length = 652
Score = 104 (41.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
L + F GV++A + + ++T++ F +G I +LI T+ G+DI +I D
Sbjct: 509 LVKLFGGVEVAEFSSKLSPGERQKTLKDFEKGKIPLLISTDAAARGIDINGVKCVINYDA 568
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAYLF 406
Q+ ++++ GR RA K A+ F
Sbjct: 569 PQYIRTYIHRV-GRTARAGKAGLAFTF 594
Score = 68 (29.0 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 32/127 (25%), Positives = 54/127 (42%)
Query: 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD-- 168
P D + G GKT + + +S V A ++ K+ VS FS Y +
Sbjct: 240 PRDVCVSAPTGSGKTLAFVIPVVQALSKRVVRQVRALAVLPTKELAQQVSNVFSAYTEGS 299
Query: 169 -IKVGLLSRFQSKAEKEEHLDMIK----HGHLNIIVGTHSLLGSRVVYNN------LGLL 217
+KV +++ +S A ++ L I+ H +I+V T L + N+ L L
Sbjct: 300 SLKVVMITGQKSFAAEQTALSEIRGGVSHSMADIVVATPGRLVDHINKNSSFSLQHLRFL 359
Query: 218 VVDEEQR 224
++DE R
Sbjct: 360 IIDEADR 366
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 124 (48.7 bits), Expect = 0.00032, P = 0.00032
Identities = 73/313 (23%), Positives = 129/313 (41%)
Query: 121 GFGKTEV-ALRAIFCVVSAGK--QAMVLAPTIVLAKQHFDVVSERFSK-YPDIKVGLLSR 176
G GKT L A+ + ++ K Q MVLAPT LA Q + + E F K ++V L
Sbjct: 62 GTGKTAAFGLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAI-ESFGKDMKGLRVATLYG 120
Query: 177 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL-----LVVDE-EQRFGVKQK 230
QS + + L+ G ++VGT L + +L L V+DE ++ +
Sbjct: 121 GQSYGPQFQQLE---RG-AQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFL 176
Query: 231 EKIA----SFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKT-----HL 281
E I + + SAT P +A +D I ++ +
Sbjct: 177 EDIQWILDHIPKTAQMCLFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKV 236
Query: 282 SAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQL 341
S +K + I ++ + +V R ++ + +P + + +G Q
Sbjct: 237 SGITKMTALERIAEVVEYDAMIIFVRTRNDTVDIAEKLERAGYPALAL---NGDLNQAQR 293
Query: 342 EETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA 401
E +++ G IL+ T++V GLDI + +I D+ A ++++ GR GRA +E
Sbjct: 294 ERCIDQMKSGKSSILVATDVVARGLDIPRISLVINYDLPGDNEAYVHRI-GRTGRAGREG 352
Query: 402 HAYLFYPDKSLLS 414
+ F + + S
Sbjct: 353 MSIAFVRPREMYS 365
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 123 (48.4 bits), Expect = 0.00034, P = 0.00034
Identities = 72/282 (25%), Positives = 117/282 (41%)
Query: 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 196
S +A+VL PT LA Q + V E + KY ++ ++ F + ++ ++HG ++
Sbjct: 71 SGQTRALVLTPTRELAAQVGESV-ETYGKYLPLRSAVV--FGGVPINPQ-INKLRHG-VD 125
Query: 197 IIVGTHSLL-----GSRVVYNNLGLLVVDEEQRF---G-VKQKEKI-ASFKISVDVLTLS 246
++V T L + V +N L +LV+DE R G ++ +KI A L S
Sbjct: 126 VLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFS 185
Query: 247 ATPIPRTLYLALTGFRDASLISTPPPERLP--IKTHLSAFSKEKVISAIKYEL--DRGGQ 302
AT LA IS P +K + K + SA+ +L Q
Sbjct: 186 ATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQK-SALLIQLIKQENWQ 244
Query: 303 VFYVLPRIK-GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI 361
V R K G L QA + A HG + + + F G +++L+ T+I
Sbjct: 245 QVLVFSRTKHGANRLAKSLIQA--EISAAAIHGNKSQGARTKALADFKSGEVRVLVATDI 302
Query: 362 VESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHA 403
GLDI ++ D+ ++++ GR GRA A
Sbjct: 303 AARGLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGATGQA 343
>UNIPROTKB|A4RHU9 [details] [associations]
symbol:DCL2 "Dicer-like protein 2" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS00690 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00490 SMART:SM00535 GO:GO:0005524
GO:GO:0046872 GO:GO:0051607 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 OrthoDB:EOG4JWZNK
RefSeq:XP_003715365.1 GeneID:2683150 KEGG:mgr:MGG_12357
Uniprot:A4RHU9
Length = 1485
Score = 104 (41.7 bits), Expect = 0.00046, Sum P(2) = 0.00045
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 345 MEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY 404
+EKF GAI +L+ T+++E G+D+ N +I D+ L Q RGR + + H
Sbjct: 490 LEKFRSGAINLLVATSVLEEGIDVPVCNLVICFDMPA-NLKSFIQRRGRARMRESKLH-- 546
Query: 405 LFYPDKSLLS 414
L + SL+S
Sbjct: 547 LMIEEDSLVS 556
Score = 74 (31.1 bits), Expect = 0.00046, Sum P(2) = 0.00045
Identities = 29/115 (25%), Positives = 54/115 (46%)
Query: 115 LICGDVGFGKTEVA---LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKV 171
++ D G GKT+VA +RA K+ LAPT+ L Q ++V+ + I +
Sbjct: 82 IVSMDTGSGKTQVAVLRIRAELERTPPEKRVWFLAPTVALCAQQYEVIRSQIKVANSIVM 141
Query: 172 GLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDE 221
S ++ + D + ++ ++V T+ +L V +++ LLV+DE
Sbjct: 142 TGDDNVDSWSDVQTW-DAVL-ANVRVVVCTYMILFEALSHAFVTMDSISLLVMDE 194
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 118 (46.6 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 32/124 (25%), Positives = 61/124 (49%)
Query: 290 ISAIKYELDRGGQVF-YVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKF 348
IS IK + G ++ +V +IK +E+ + ++ G + HG + + + ++ F
Sbjct: 481 ISPIKNSGNNGNKIIVFVETKIK-VEDILQIIRAE--GYNATSIHGDKTQNERDSVLKDF 537
Query: 349 AQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY- 407
G ILI T++ GLD+++ +I D ++++ GR GR + AY F+
Sbjct: 538 RNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRI-GRTGRCQQLGTAYTFFT 596
Query: 408 PDKS 411
PD +
Sbjct: 597 PDNA 600
Score = 55 (24.4 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 30/93 (32%), Positives = 42/93 (45%)
Query: 139 GKQAMVLAPTIVLAKQHFDVVSE--RFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 196
G A+VLAPT LA+Q VV + K P+I+ + SK + LD G +
Sbjct: 310 GPIALVLAPTRELAQQIQSVVRDYGHLCK-PEIRHTCIFGGSSKVPQARDLD---RG-VE 364
Query: 197 IIVGTHSLLGSRVVYNNLGL-----LVVDEEQR 224
+I+ T L + N L LV+DE R
Sbjct: 365 VIIATPGRLIDFLENRNTNLQRCTYLVLDEADR 397
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 91 (37.1 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 26/78 (33%), Positives = 36/78 (46%)
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
+FP V + H RQ + KF KILI T++ GLDI +I +
Sbjct: 272 SFPSVAL---HSMMKQRQRFAALAKFKSSIFKILIATDVAARGLDIPTVQVVINHNTP-- 326
Query: 383 GLAQLYQLR-GRVGRADK 399
GL ++Y R GR RA +
Sbjct: 327 GLPKIYIHRVGRTARAGR 344
Score = 74 (31.1 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 53/193 (27%), Positives = 74/193 (38%)
Query: 77 PAIAEFAAQFPYE-PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135
P + E A Q PTP Q + L R D L C G GKT + + V
Sbjct: 11 PWLVEQARQMGLSRPTPVQASCIPPI---LQGR----DCLGCAKTGSGKTAAFVLPVLQV 63
Query: 136 VSA---GKQAMVLAPTIVLAKQ---HFDVVSERFSKYPDIKVGLLSRFQSKAE--KEEHL 187
+S G +VL PT LA Q F V+ + + VG L E ++ H+
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHV 123
Query: 188 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 247
+ G L H + L LV+DE R ++ A F ++V+ L A
Sbjct: 124 VIATPGRL----ADHLRSSNTFSLKKLKFLVLDEADRL---LEQGCADFTADLEVI-LEA 175
Query: 248 TPIPR-TLYLALT 259
P R TL + T
Sbjct: 176 VPARRQTLLFSAT 188
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 121 (47.7 bits), Expect = 0.00054, P = 0.00054
Identities = 73/306 (23%), Positives = 125/306 (40%)
Query: 121 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIK-VGLLSR 176
G GKT + V K Q +V+APT LA Q V E K K V +L
Sbjct: 49 GTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQ----VGEELYKIGKHKRVRILPI 104
Query: 177 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 236
+ + + + KH H IIVGT + + N L + + + + +++ +
Sbjct: 105 YGGQDINRQIRALKKHPH--IIVGTPGRILDHI---NRKTLRLQNVETVVLDEADEMLNM 159
Query: 237 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-Y 295
D+ + T +P T L I + H+ +KE + I+ +
Sbjct: 160 GFIEDIEAI-LTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF 218
Query: 296 ELD-RGGQVFYVLPRIKGLEEP------------MDFLQQAFP--GVDIAIAHGQQYSRQ 340
L+ + + F VL R+ ++ P +D L +A G HG +
Sbjct: 219 YLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAK 278
Query: 341 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 400
+ KF +G+I++L+ T++ GLDI + D+ Q + ++++ GR GRA K+
Sbjct: 279 RMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKK 337
Query: 401 AHAYLF 406
A LF
Sbjct: 338 GIAMLF 343
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 121 (47.7 bits), Expect = 0.00055, P = 0.00055
Identities = 73/306 (23%), Positives = 125/306 (40%)
Query: 121 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIK-VGLLSR 176
G GKT + V K Q +V+APT LA Q V E K K V +L
Sbjct: 49 GTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQ----VGEELYKIGKHKRVRILPI 104
Query: 177 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 236
+ + + + KH H IIVGT + + N L + + + + +++ +
Sbjct: 105 YGGQDINRQIRALKKHPH--IIVGTPGRILDHI---NRKTLRLQNVETVVLDEADEMLNM 159
Query: 237 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-Y 295
D+ + T +P T L I + H+ +KE + I+ +
Sbjct: 160 GFIEDIEAI-LTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF 218
Query: 296 ELD-RGGQVFYVLPRIKGLEEP------------MDFLQQAFP--GVDIAIAHGQQYSRQ 340
L+ + + F VL R+ ++ P +D L +A G HG +
Sbjct: 219 YLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAK 278
Query: 341 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 400
+ KF +G+I++L+ T++ GLDI + D+ Q + ++++ GR GRA K+
Sbjct: 279 RMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKK 337
Query: 401 AHAYLF 406
A LF
Sbjct: 338 GIAMLF 343
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 121 (47.7 bits), Expect = 0.00055, P = 0.00055
Identities = 73/306 (23%), Positives = 125/306 (40%)
Query: 121 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIK-VGLLSR 176
G GKT + V K Q +V+APT LA Q V E K K V +L
Sbjct: 49 GTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQ----VGEELYKIGKHKRVRILPI 104
Query: 177 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 236
+ + + + KH H IIVGT + + N L + + + + +++ +
Sbjct: 105 YGGQDINRQIRALKKHPH--IIVGTPGRILDHI---NRKTLRLQNVETVVLDEADEMLNM 159
Query: 237 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-Y 295
D+ + T +P T L I + H+ +KE + I+ +
Sbjct: 160 GFIEDIEAI-LTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF 218
Query: 296 ELD-RGGQVFYVLPRIKGLEEP------------MDFLQQAFP--GVDIAIAHGQQYSRQ 340
L+ + + F VL R+ ++ P +D L +A G HG +
Sbjct: 219 YLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAK 278
Query: 341 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 400
+ KF +G+I++L+ T++ GLDI + D+ Q + ++++ GR GRA K+
Sbjct: 279 RMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKK 337
Query: 401 AHAYLF 406
A LF
Sbjct: 338 GIAMLF 343
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 121 (47.7 bits), Expect = 0.00055, P = 0.00055
Identities = 73/306 (23%), Positives = 125/306 (40%)
Query: 121 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIK-VGLLSR 176
G GKT + V K Q +V+APT LA Q V E K K V +L
Sbjct: 49 GTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQ----VGEELYKIGKHKRVRILPI 104
Query: 177 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 236
+ + + + KH H IIVGT + + N L + + + + +++ +
Sbjct: 105 YGGQDINRQIRALKKHPH--IIVGTPGRILDHI---NRKTLRLQNVETVVLDEADEMLNM 159
Query: 237 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-Y 295
D+ + T +P T L I + H+ +KE + I+ +
Sbjct: 160 GFIEDIEAI-LTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF 218
Query: 296 ELD-RGGQVFYVLPRIKGLEEP------------MDFLQQAFP--GVDIAIAHGQQYSRQ 340
L+ + + F VL R+ ++ P +D L +A G HG +
Sbjct: 219 YLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAK 278
Query: 341 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 400
+ KF +G+I++L+ T++ GLDI + D+ Q + ++++ GR GRA K+
Sbjct: 279 RMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKK 337
Query: 401 AHAYLF 406
A LF
Sbjct: 338 GIAMLF 343
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 121 (47.7 bits), Expect = 0.00055, P = 0.00055
Identities = 73/306 (23%), Positives = 125/306 (40%)
Query: 121 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIK-VGLLSR 176
G GKT + V K Q +V+APT LA Q V E K K V +L
Sbjct: 49 GTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQ----VGEELYKIGKHKRVRILPI 104
Query: 177 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 236
+ + + + KH H IIVGT + + N L + + + + +++ +
Sbjct: 105 YGGQDINRQIRALKKHPH--IIVGTPGRILDHI---NRKTLRLQNVETVVLDEADEMLNM 159
Query: 237 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-Y 295
D+ + T +P T L I + H+ +KE + I+ +
Sbjct: 160 GFIEDIEAI-LTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF 218
Query: 296 ELD-RGGQVFYVLPRIKGLEEP------------MDFLQQAFP--GVDIAIAHGQQYSRQ 340
L+ + + F VL R+ ++ P +D L +A G HG +
Sbjct: 219 YLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAK 278
Query: 341 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 400
+ KF +G+I++L+ T++ GLDI + D+ Q + ++++ GR GRA K+
Sbjct: 279 RMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKK 337
Query: 401 AHAYLF 406
A LF
Sbjct: 338 GIAMLF 343
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 121 (47.7 bits), Expect = 0.00055, P = 0.00055
Identities = 73/306 (23%), Positives = 125/306 (40%)
Query: 121 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIK-VGLLSR 176
G GKT + V K Q +V+APT LA Q V E K K V +L
Sbjct: 49 GTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQ----VGEELYKIGKHKRVRILPI 104
Query: 177 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 236
+ + + + KH H IIVGT + + N L + + + + +++ +
Sbjct: 105 YGGQDINRQIRALKKHPH--IIVGTPGRILDHI---NRKTLRLQNVETVVLDEADEMLNM 159
Query: 237 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-Y 295
D+ + T +P T L I + H+ +KE + I+ +
Sbjct: 160 GFIEDIEAI-LTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF 218
Query: 296 ELD-RGGQVFYVLPRIKGLEEP------------MDFLQQAFP--GVDIAIAHGQQYSRQ 340
L+ + + F VL R+ ++ P +D L +A G HG +
Sbjct: 219 YLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAK 278
Query: 341 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 400
+ KF +G+I++L+ T++ GLDI + D+ Q + ++++ GR GRA K+
Sbjct: 279 RMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKK 337
Query: 401 AHAYLF 406
A LF
Sbjct: 338 GIAMLF 343
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 121 (47.7 bits), Expect = 0.00055, P = 0.00055
Identities = 73/306 (23%), Positives = 125/306 (40%)
Query: 121 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIK-VGLLSR 176
G GKT + V K Q +V+APT LA Q V E K K V +L
Sbjct: 49 GTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQ----VGEELYKIGKHKRVRILPI 104
Query: 177 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 236
+ + + + KH H IIVGT + + N L + + + + +++ +
Sbjct: 105 YGGQDINRQIRALKKHPH--IIVGTPGRILDHI---NRKTLRLQNVETVVLDEADEMLNM 159
Query: 237 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-Y 295
D+ + T +P T L I + H+ +KE + I+ +
Sbjct: 160 GFIEDIEAI-LTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF 218
Query: 296 ELD-RGGQVFYVLPRIKGLEEP------------MDFLQQAFP--GVDIAIAHGQQYSRQ 340
L+ + + F VL R+ ++ P +D L +A G HG +
Sbjct: 219 YLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAK 278
Query: 341 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 400
+ KF +G+I++L+ T++ GLDI + D+ Q + ++++ GR GRA K+
Sbjct: 279 RMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKK 337
Query: 401 AHAYLF 406
A LF
Sbjct: 338 GIAMLF 343
>POMBASE|SPBC12C2.06 [details] [associations]
symbol:SPBC12C2.06 "cytoplasmic ATP-dependent RNA
helicase Dbp5 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0002184 "cytoplasmic translational termination" evidence=NAS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IC] [GO:0005635 "nuclear envelope" evidence=IDA]
[GO:0005643 "nuclear pore" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006406 "mRNA
export from nucleus" evidence=ISO] [GO:0006415 "translational
termination" evidence=ISO] [GO:0015031 "protein transport"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC12C2.06 GO:GO:0005829 GO:GO:0005524
GO:GO:0005635 GO:GO:0015031 EMBL:CU329671 GO:GO:0031965
GO:GO:0005643 GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0006406
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 OMA:PQAICLA OrthoDB:EOG4B2X5R
PIR:T39375 RefSeq:NP_596016.1 PDB:3FHO PDBsum:3FHO
ProteinModelPortal:Q09747 STRING:Q09747 PRIDE:Q09747
EnsemblFungi:SPBC12C2.06.1 GeneID:2539975 KEGG:spo:SPBC12C2.06
EvolutionaryTrace:Q09747 NextBio:20801118 GO:GO:0002184
Uniprot:Q09747
Length = 503
Score = 96 (38.9 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 27/90 (30%), Positives = 41/90 (45%)
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV--QQFG 383
G +A G Q + M+ F G K+L+ TN++ G+D+ N ++ D+ Q G
Sbjct: 376 GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAG 435
Query: 384 LA--QLYQLR-GRVGRADKEAHAYLFYPDK 410
Q Y R GR GR + + F DK
Sbjct: 436 RPDPQTYLHRIGRTGRFGRVGVSINFVHDK 465
Score = 70 (29.7 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 24/53 (45%), Positives = 31/53 (58%)
Query: 121 GFGKTEV-ALRAIFCV-VSAGK-QAMVLAPTIVLAKQHFDVVSERFSKYPDIK 170
G GKT AL + V S K QA+ LAP+ LA+Q DVV+E KY ++K
Sbjct: 163 GTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTE-MGKYTEVK 214
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 122 (48.0 bits), Expect = 0.00067, P = 0.00067
Identities = 61/283 (21%), Positives = 116/283 (40%)
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G A+V++PT LA Q F+ + + + GL+ + E++E L + ++ +
Sbjct: 111 GLGALVISPTRELAIQTFETLV-KIGRLHSFSAGLIIGGNNYKEEKERLSRM---NILVC 166
Query: 199 VGTHSL--LGSRVVYNNLGL--LVVDEEQR-----FGVKQKEKIASFKISVDVLTLSATP 249
L + V ++ GL L++DE R F ++S + + SAT
Sbjct: 167 TPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQ 226
Query: 250 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISA---IKYELDRGGQVFYV 306
LA ++ IS + ++L+ F ++ I + R F
Sbjct: 227 TKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHLKFKT 286
Query: 307 LPRIKGLEEPMDFLQQAF----PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV 362
+ + ++ + F+ + F PG+ + HG+Q E KF +L CT+IV
Sbjct: 287 IVFLSSCKQ-VRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIV 345
Query: 363 ESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYL 405
GLD + +I D + ++++ GR R ++ +A L
Sbjct: 346 ARGLDFPAVDWVIQLDAPEDVDTYIHRV-GRTARYNRSGNALL 387
>WB|WBGene00008400 [details] [associations]
symbol:drh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0035188 "hatching" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0007276 "gamete generation" evidence=IMP]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IDA] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
[GO:0070063 "RNA polymerase binding" evidence=IPI] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0070090 "metaphase plate"
evidence=IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IMP] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0035188 GO:GO:0040010 GO:GO:0003727 GO:GO:0006974
GO:GO:0003725 GO:GO:0000794 GO:GO:0030422 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026
GO:GO:0043186 GO:GO:0008186 eggNOG:COG1111
GeneTree:ENSGT00510000046789 KO:K12646 EMBL:Z79752 GO:GO:0070090
PIR:T20332 RefSeq:NP_492161.3 ProteinModelPortal:Q93413 SMR:Q93413
IntAct:Q93413 MINT:MINT-6178703 STRING:Q93413 PaxDb:Q93413
EnsemblMetazoa:D2005.5 GeneID:172546 KEGG:cel:CELE_D2005.5
UCSC:D2005.5 CTD:172546 WormBase:D2005.5 HOGENOM:HOG000018535
InParanoid:Q93413 OMA:ACNLIIK NextBio:875985 Uniprot:Q93413
Length = 1119
Score = 118 (46.6 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 335 QQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRV 394
QQ S++ + T++KF G +K+++ T++VE GLD+ N II + QL Q RGR
Sbjct: 810 QQTSQEQQLTLDKFNNGRLKVIVATSVVEEGLDVTACNLIIKYNCSSGSAIQLVQQRGRA 869
Query: 395 GRADKEAHAYLFYPDKSL 412
RA K + + L S+
Sbjct: 870 -RA-KNSRSVLLSVKSSI 885
Score = 55 (24.4 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 115 LICGDVGFGKTEVALRAIFCVV----SAGKQAMV--LAPTIVLAKQHFDVVSERFSKY 166
+I G GKTEVA+ A + S GK + V L P I L Q D RF KY
Sbjct: 389 VIVAPTGSGKTEVAIYAALKHIEERTSQGKPSRVVLLVPKIPLVGQQKD----RFLKY 442
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 119 (46.9 bits), Expect = 0.00073, P = 0.00073
Identities = 78/308 (25%), Positives = 124/308 (40%)
Query: 121 GFGKTEVALRAIFCVVSAG---KQAMVLAPTIVLAKQHFDVVSE--RFSKY-PDIKVGLL 174
G GKT + + A QA+VL PT LA Q V E R +++ P+ K+ L
Sbjct: 50 GSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ---VAGELRRLARFLPNTKILTL 106
Query: 175 SRFQSKAEKEEHLDMIKHGHLNIIVGT------HSLLGSRVVYNNLGLLVVDEEQRF--- 225
Q + + L H IIV T H G+ V + L LV+DE R
Sbjct: 107 CGGQPFGMQRDSLQHAPH----IIVATPGRLLDHLQKGT-VSLDALNTLVMDEADRMLDM 161
Query: 226 GVKQK-EKIASFK-ISVDVLTLSATPIPRTLYLALTGF--RDASLISTPPPERLP-IKTH 280
G + + F S L SAT P + A++G RD I + LP I+
Sbjct: 162 GFSDAIDDVIRFAPASRQTLLFSAT-WPEAI-AAISGRVQRDPLAIEIDSTDALPPIEQQ 219
Query: 281 LSAFSKEKVISAIK--YELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
S + I ++ L + K + D L + G HG
Sbjct: 220 FYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEV--GQSALSLHGDLEQ 277
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
R ++T+ +FA G+ ++L+ T++ GLDI++ ++ ++ ++++ GR RA
Sbjct: 278 RDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRI-GRTARAG 336
Query: 399 KEAHAYLF 406
A F
Sbjct: 337 NSGLAISF 344
>SGD|S000005572 [details] [associations]
symbol:DBP5 "Cytoplasmic ATP-dependent RNA helicase of the
DEAD-box family" species:4932 "Saccharomyces cerevisiae"
[GO:0044614 "nuclear pore cytoplasmic filaments" evidence=IDA]
[GO:0005934 "cellular bud tip" evidence=IDA] [GO:0005643 "nuclear
pore" evidence=IEA;IPI] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0031965 "nuclear membrane" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IDA] [GO:0006406 "mRNA
export from nucleus" evidence=IGI;IMP] [GO:0003724 "RNA helicase
activity" evidence=ISS;IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0006415 "translational termination" evidence=IGI;IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006810 "transport" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000822 "inositol hexakisphosphate
binding" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000005572 GO:GO:0005524
GO:GO:0005737 EMBL:BK006948 GO:GO:0005934 GO:GO:0015031
GO:GO:0031965 GO:GO:0003723 GO:GO:0006406 GO:GO:0005844
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 OMA:PQAICLA OrthoDB:EOG4B2X5R
EMBL:U28135 EMBL:Z74954 EMBL:Z74955 PIR:S66920 RefSeq:NP_014689.1
PDB:2KBE PDB:2KBF PDB:3GFP PDB:3PEU PDB:3PEV PDB:3PEW PDB:3PEY
PDB:3RRM PDB:3RRN PDBsum:2KBE PDBsum:2KBF PDBsum:3GFP PDBsum:3PEU
PDBsum:3PEV PDBsum:3PEW PDBsum:3PEY PDBsum:3RRM PDBsum:3RRN
ProteinModelPortal:P20449 SMR:P20449 DIP:DIP-2352N IntAct:P20449
MINT:MINT-488024 STRING:P20449 PaxDb:P20449 PeptideAtlas:P20449
EnsemblFungi:YOR046C GeneID:854211 KEGG:sce:YOR046C CYGD:YOR046c
GeneTree:ENSGT00530000063236 EvolutionaryTrace:P20449
NextBio:976065 Genevestigator:P20449 GermOnline:YOR046C
GO:GO:0044614 GO:GO:0008186 GO:GO:0006415 Uniprot:P20449
Length = 482
Score = 119 (46.9 bits), Expect = 0.00079, P = 0.00079
Identities = 80/355 (22%), Positives = 144/355 (40%)
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---A 138
+A +F +P+ Q++A L P + + G GKT + V+ A
Sbjct: 108 YAMKFQ-KPSKIQERAL-----PLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDA 161
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
QA+ LAP+ LA+Q +VV E K+ I L+ EK + ++ +I
Sbjct: 162 SPQAICLAPSRELARQTLEVVQE-MGKFTKITSQLI--VPDSFEKNKQINA------QVI 212
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGT G+ + L+ + + + F + + + + + D +P+ L L
Sbjct: 213 VGTP---GTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVL 269
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK--Y-ELDRGGQVFYVLPRIKGL-- 313
A + + +P L + E + AIK Y + F VL + GL
Sbjct: 270 FSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMT 329
Query: 314 ----------EEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI 361
++ + L G +++I HG +++ + ++ F +G K+LI TN+
Sbjct: 330 IGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV 389
Query: 362 VESGLDIQNANTIIVQDVQQFGLAQL----YQLR-GRVGRADKEAHAYLFYPDKS 411
+ G+DI + ++ D+ Q Y R GR GR ++ A F DK+
Sbjct: 390 LARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 444
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 91 (37.1 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 26/78 (33%), Positives = 36/78 (46%)
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
+FP V + H RQ + KF KILI T++ GLDI +I +
Sbjct: 275 SFPSVAL---HSMMKQRQRFAALAKFKSSIFKILIATDVAARGLDIPTVQVVINHNTP-- 329
Query: 383 GLAQLYQLR-GRVGRADK 399
GL ++Y R GR RA +
Sbjct: 330 GLPKIYIHRVGRTARAGR 347
Score = 74 (31.1 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 53/193 (27%), Positives = 74/193 (38%)
Query: 77 PAIAEFAAQFPYE-PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135
P + E A Q PTP Q + L R D L C G GKT + + V
Sbjct: 14 PWLVEQARQMGLSRPTPVQASCIPPI---LQGR----DCLGCAKTGSGKTAAFVLPVLQV 66
Query: 136 VSA---GKQAMVLAPTIVLAKQ---HFDVVSERFSKYPDIKVGLLSRFQSKAE--KEEHL 187
+S G +VL PT LA Q F V+ + + VG L E ++ H+
Sbjct: 67 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHV 126
Query: 188 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 247
+ G L H + L LV+DE R ++ A F ++V+ L A
Sbjct: 127 VIATPGRL----ADHLRSSNTFSLKKLKFLVLDEADRL---LEQGCADFTADLEVI-LEA 178
Query: 248 TPIPR-TLYLALT 259
P R TL + T
Sbjct: 179 VPARRQTLLFSAT 191
>SGD|S000003570 [details] [associations]
symbol:HCA4 "DEAD box RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA;IC]
[GO:0006364 "rRNA processing" evidence=IEA;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA;IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003570
GO:GO:0005524 GO:GO:0005730 EMBL:BK006943 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 EMBL:U72149 EMBL:Z49308 EMBL:AY693118
PIR:S56805 RefSeq:NP_012501.1 ProteinModelPortal:P20448 SMR:P20448
DIP:DIP-6819N IntAct:P20448 MINT:MINT-620511 STRING:P20448
PaxDb:P20448 PeptideAtlas:P20448 EnsemblFungi:YJL033W GeneID:853419
KEGG:sce:YJL033W CYGD:YJL033w GeneTree:ENSGT00550000074980
NextBio:973942 Genevestigator:P20448 GermOnline:YJL033W
Uniprot:P20448
Length = 770
Score = 87 (35.7 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 325 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 384
PG+ + HG+Q R ET++KF + L T++V G+D + ++ D +
Sbjct: 316 PGISLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVD 375
Query: 385 AQLYQLRGRVGRADKEAHAYL 405
++++ GR R K+ + +
Sbjct: 376 TYIHRV-GRCARYGKKGKSLI 395
Score = 83 (34.3 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 61/234 (26%), Positives = 94/234 (40%)
Query: 62 YLHRLKQKRPPYPKNPAIAEFAAQFPY-EPTPD--QKKAFLDVERDLTERETPM-----D 113
Y+ LK K Y A+F P +PT ++ +F+ + ++ P+ D
Sbjct: 22 YIENLKTKIDEYDPKITKAKFFKDLPISDPTLKGLRESSFIKLT-EIQADSIPVSLQGHD 80
Query: 114 RLICGDVGFGKTEVALRAIFCVVSA-------GKQAMVLAPTIVLAKQHFDVVSERFSKY 166
L G GKT L + + G A++++PT LA Q ++V++ + +
Sbjct: 81 VLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLT-KIGSH 139
Query: 167 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL----LGSRVVYN--NLGLLVVD 220
GL+ K K E L+ I +NI++GT L V N NL +LV+D
Sbjct: 140 TSFSAGLV--IGGKDVKFE-LERISR--INILIGTPGRILQHLDQAVGLNTSNLQMLVLD 194
Query: 221 EEQR---FGVKQK-EKIAS-FKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
E R G K+ + I S S L SAT LA D + T
Sbjct: 195 EADRCLDMGFKKTLDAIVSTLSPSRQTLLFSATQSQSVADLARLSLTDYKTVGT 248
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 121 (47.7 bits), Expect = 0.00088, P = 0.00088
Identities = 70/281 (24%), Positives = 117/281 (41%)
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKV-GLLSRFQSKAEKEEHLDMI--KHGHLNIIV 199
+VLAPT LAKQ + E + V G +S ++ +D++ G + ++
Sbjct: 184 LVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLI 243
Query: 200 GTHSLLGSRVVYNNLGLLVVDE-EQRFGVKQKEKIASFKISVDV----LTLSATPIPRTL 254
SL V Y LV+DE +Q V +E + S ++ + SAT +P +
Sbjct: 244 EGRSLKLGEVEY-----LVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSAT-MPTWV 297
Query: 255 YLALTGFRDASL---ISTPPPERLP--IKTHLSAF---SKEKVISAIKYELDRGGQVFYV 306
+ D L + E+L IK + A SK ++S + +GG+
Sbjct: 298 KKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVF 357
Query: 307 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 366
+ +E L + + HG Q E T+ F QG +L+ T++ GL
Sbjct: 358 TQTKRDADEVSLALSNS---IATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGL 414
Query: 367 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 407
DI N + +I ++ +++ GR GRA KE A L +
Sbjct: 415 DIPNVDLVIHYELPNDPETFVHR-SGRTGRAGKEGSAILMH 454
>UNIPROTKB|Q71YU6 [details] [associations]
symbol:LMOf2365_1746 "Helicase domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017262
GenomeReviews:AE017262_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:YP_014341.1 ProteinModelPortal:Q71YU6
STRING:Q71YU6 GeneID:2799880 KEGG:lmf:LMOf2365_1746 PATRIC:20324779
HOGENOM:HOG000268811 OMA:MTIATPF ProtClustDB:CLSK564571
Uniprot:Q71YU6
Length = 442
Score = 118 (46.6 bits), Expect = 0.00089, P = 0.00089
Identities = 75/311 (24%), Positives = 130/311 (41%)
Query: 113 DRLICGDVGFGKTEV-ALRAIFCVVSAGK-QAMVLAPTIVLAKQHFDVVSERFSKYPDIK 170
D L G GKT AL + + + K Q +VLAP+ L Q +V+ S P +
Sbjct: 38 DVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWLVLAPSHELVMQITEVIR---SWLPSDE 94
Query: 171 VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG----SRVVYNNLGLLVVDE-EQRF 225
+ ++S A + ++ +K I+ L ++ + + + +DE +Q
Sbjct: 95 LTVISLIGG-ANVKRQIEKLKKKPQIIVASPGRALELIKQKKIKMHEIKTITLDECDQLL 153
Query: 226 ---GVKQKEKIASFKISVDVLTL-SATPIPRT-LYLALTGFRDASLISTPPPERLPIKTH 280
K +I + LTL SAT + ++ A T L T PE L H
Sbjct: 154 RQENFKSTLEIVESAVRDRQLTLVSATKLENPDMFFAQTENTPVMLEVTAKPEELTNVEH 213
Query: 281 L--SAFSKEK--VISAIKYELDRGGQVFYV-LPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
L S++K ++ I + D G VF PR++ L E + + + G+ HG+
Sbjct: 214 LYMDVESRDKATLLRRISHIKDMRGLVFVKDKPRMEILLEKLHYDKVKAAGI-----HGE 268
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
+ ++ ++ F +G + LI T++ GLDI++ +I D+ ++ GR G
Sbjct: 269 IRKEKRKKYLDDFKKGTLTYLIVTDVAARGLDIEDLPYVIHYDLAASEKEYTHR-SGRTG 327
Query: 396 RADKEAHAYLF 406
R K F
Sbjct: 328 RMGKSGTVITF 338
>CGD|CAL0004182 [details] [associations]
symbol:HCA4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004182 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 EMBL:AACQ01000023 EMBL:AACQ01000025
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_720233.1 RefSeq:XP_720463.1 ProteinModelPortal:Q5AF95
STRING:Q5AF95 GeneID:3637911 GeneID:3638091 KEGG:cal:CaO19.10227
KEGG:cal:CaO19.2712 KO:K14776 InterPro:IPR025313 Pfam:PF13959
Uniprot:Q5AF95
Length = 765
Score = 121 (47.7 bits), Expect = 0.00090, P = 0.00090
Identities = 71/287 (24%), Positives = 128/287 (44%)
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR---FQSKAEKEEHLDMIKHGHL 195
G A++++PT LA Q F+V++ + KY GL++ Q + E+ ++++
Sbjct: 120 GLAALIVSPTRELAVQIFEVLT-KIGKYNTFSAGLVTGGKDVQFEKERVSRMNILVGTPG 178
Query: 196 NIIVGTHSLLGSRVVYNNLGLLVVDEEQR---FGVKQK-EKIAS-FKISVDVLTLSATP- 249
I + +G +NL +LV+DE R G K++ + I + L SAT
Sbjct: 179 RISQHLNEAVGMET--SNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTRQTLLFSATQS 236
Query: 250 --IPRTLYLALTG------FRDASLISTPPP-ERLPIKTHLSAFSKEKVI-SAIKYELDR 299
+ L+LT D + +TP E+ +K L K V+ S IK L
Sbjct: 237 ESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVKVPLD--EKLDVLWSFIKSHLKS 294
Query: 300 GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ-QYSRQLEETMEKFAQGAIKILIC 358
VF+ K ++ + + PG+ + +G+ + + +LE TM KF+Q L
Sbjct: 295 KILVFF--SSSKQVQYTYETFRTLQPGISLMKLYGRHKQTSRLETTM-KFSQAQHACLFA 351
Query: 359 TNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYL 405
T+IV GLD + ++ D + ++++ GR R ++ + L
Sbjct: 352 TDIVARGLDFPAIDWVVQVDCPEDAATYVHRV-GRSARFGRKGKSLL 397
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 643 617 0.00089 120 3 11 22 0.37 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 130
No. of states in DFA: 618 (66 KB)
Total size of DFA: 311 KB (2160 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 51.54u 0.10s 51.64t Elapsed: 00:00:03
Total cpu time: 51.57u 0.10s 51.67t Elapsed: 00:00:03
Start: Tue May 21 03:59:55 2013 End: Tue May 21 03:59:58 2013
WARNINGS ISSUED: 1