BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006476
(643 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224128810|ref|XP_002320427.1| predicted protein [Populus trichocarpa]
gi|222861200|gb|EEE98742.1| predicted protein [Populus trichocarpa]
Length = 817
Score = 1158 bits (2996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/633 (87%), Positives = 602/633 (95%), Gaps = 1/633 (0%)
Query: 11 CGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 70
+++ Y+ PNETKRPRTLSKLSDT AWERRKTKGKVAIQKMVVDLMELYLHRLKQ+R
Sbjct: 186 ASRMLYRYNL-PNETKRPRTLSKLSDTGAWERRKTKGKVAIQKMVVDLMELYLHRLKQRR 244
Query: 71 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130
PPYPK P +AEFAAQFPYEPTPDQK AF+DVERDL +RETPMDRLICGDVGFGKTEVALR
Sbjct: 245 PPYPKTPFMAEFAAQFPYEPTPDQKLAFIDVERDLNQRETPMDRLICGDVGFGKTEVALR 304
Query: 131 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190
AIFC+VSAGKQAMVLAPTIVLAKQHFDV+SERFSKY IKV LLSRFQSKAEKE +L+MI
Sbjct: 305 AIFCIVSAGKQAMVLAPTIVLAKQHFDVISERFSKYSHIKVALLSRFQSKAEKEMYLNMI 364
Query: 191 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 250
+HGHL+IIVGTHSLLG+RVVYNNLGLLVVDEEQRFGVKQKEKIASFK SVDVLTLSATPI
Sbjct: 365 EHGHLDIIVGTHSLLGNRVVYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPI 424
Query: 251 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 310
PRTLYLALTGFRDASLISTPPPER+PIKTHLSA++K+K+ISAIKYELDRGGQVFYVLPRI
Sbjct: 425 PRTLYLALTGFRDASLISTPPPERVPIKTHLSAYNKDKLISAIKYELDRGGQVFYVLPRI 484
Query: 311 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370
KGLEE DFL+Q+FP V+IA+AHGQQYS+QLE+TME+FAQG IKILICTNIVESGLDIQN
Sbjct: 485 KGLEEVKDFLEQSFPNVEIAVAHGQQYSKQLEDTMEQFAQGEIKILICTNIVESGLDIQN 544
Query: 371 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 430
ANTII+QDVQ FGLAQLYQLRGRVGRADKEAHA+LFYPDKS+L+DQALERLAALEECREL
Sbjct: 545 ANTIIIQDVQLFGLAQLYQLRGRVGRADKEAHAHLFYPDKSMLTDQALERLAALEECREL 604
Query: 431 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 490
GQGFQLAE+DMGIRGFGTIFGEQQTGDVGNVGVD FFEMLFESLSKVDEH VISVPY+SV
Sbjct: 605 GQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGVDFFFEMLFESLSKVDEHRVISVPYQSV 664
Query: 491 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 550
QID+NINP LPS+YIN+LENPME++NEAEKAAE DIW LMQFTE+LRRQYGKEP SMEI+
Sbjct: 665 QIDLNINPHLPSDYINYLENPMEIINEAEKAAETDIWSLMQFTENLRRQYGKEPSSMEII 724
Query: 551 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 610
LKKLYVRRMAADIGIT+IYASGKMVGM+TNM+KKVFK+M DSM+SE+HRNSL F+G++IK
Sbjct: 725 LKKLYVRRMAADIGITRIYASGKMVGMETNMSKKVFKLMTDSMSSEMHRNSLFFDGNEIK 784
Query: 611 AELLLELPREQLLNWIFQCLAELYASLPALIKY 643
AELLLELPR QLLNWIFQC+AEL+A LPALIKY
Sbjct: 785 AELLLELPRAQLLNWIFQCIAELHACLPALIKY 817
>gi|297832728|ref|XP_002884246.1| hypothetical protein ARALYDRAFT_477305 [Arabidopsis lyrata subsp.
lyrata]
gi|297330086|gb|EFH60505.1| hypothetical protein ARALYDRAFT_477305 [Arabidopsis lyrata subsp.
lyrata]
Length = 823
Score = 1147 bits (2966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/630 (86%), Positives = 600/630 (95%), Gaps = 1/630 (0%)
Query: 14 IMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 73
+++ Y+ PNETKRPRTLS+LSDT+ WERRKTKGKVAIQKMVVDLMELYLHRL+QKR PY
Sbjct: 195 LLYRYNL-PNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHRLRQKRYPY 253
Query: 74 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133
PKNP +A+FAAQFPY TPDQK+AFLDVE+DLTERETPMDRLICGDVGFGKTEVALRAIF
Sbjct: 254 PKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIF 313
Query: 134 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 193
CVVSAGKQAMVLAPTIVLAKQH+DV+SERFS YP IKVGLLSRFQ+KAEKEE+L+MIK G
Sbjct: 314 CVVSAGKQAMVLAPTIVLAKQHYDVISERFSLYPQIKVGLLSRFQTKAEKEEYLEMIKDG 373
Query: 194 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 253
HLNIIVGTHSLLGSRVVY+NLGLLVVDEEQRFGVKQKEKIASFK SVDVLTLSATPIPRT
Sbjct: 374 HLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRT 433
Query: 254 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 313
LYLALTGFRDASLISTPPPER+PIKTHLS+F KEKVI AIK ELDRGGQVFYVLPRIKGL
Sbjct: 434 LYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEAIKNELDRGGQVFYVLPRIKGL 493
Query: 314 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 373
EE MDFL++AFP +DIA+AHG+QYS+QLEETME+FAQG IKILICTNIVESGLDIQNANT
Sbjct: 494 EEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANT 553
Query: 374 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 433
II+QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERL+ALEECRELGQG
Sbjct: 554 IIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQG 613
Query: 434 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 493
FQLAE+DMGIRGFGTIFGEQQTGDVGNVG+DLFFEMLFESLSKV+E + SVPY V+ID
Sbjct: 614 FQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEELRIFSVPYDLVKID 673
Query: 494 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553
ININPRLPSEY+N+LENPME++NEAEKAAE+D+W LMQFTE+LRRQYGKEPYSMEI+LKK
Sbjct: 674 ININPRLPSEYVNYLENPMEIINEAEKAAEKDMWSLMQFTENLRRQYGKEPYSMEIILKK 733
Query: 554 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL 613
LYVRRMAAD+G+ +IYASGKMV MKTNM+KKVFK++ DSMT +V+R+SL +EGDQI AEL
Sbjct: 734 LYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAEL 793
Query: 614 LLELPREQLLNWIFQCLAELYASLPALIKY 643
LLELPREQLLNW+FQCL+EL+ASLPALIKY
Sbjct: 794 LLELPREQLLNWMFQCLSELHASLPALIKY 823
>gi|18396054|ref|NP_566160.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
gi|332640233|gb|AEE73754.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
Length = 823
Score = 1144 bits (2959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/630 (86%), Positives = 599/630 (95%), Gaps = 1/630 (0%)
Query: 14 IMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 73
+++ Y+ PNETKRPRTLS+LSDT+ WERRKTKGKVAIQKMVVDLMELYLHRL+QKR PY
Sbjct: 195 LLYRYNL-PNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHRLRQKRYPY 253
Query: 74 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133
PKNP +A+FAAQFPY TPDQK+AFLDVE+DLTERETPMDRLICGDVGFGKTEVALRAIF
Sbjct: 254 PKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIF 313
Query: 134 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 193
CVVS GKQAMVLAPTIVLAKQH+DV+SERFS YP IKVGLLSRFQ+KAEKEE+L+MIK G
Sbjct: 314 CVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTG 373
Query: 194 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 253
HLNIIVGTHSLLGSRVVY+NLGLLVVDEEQRFGVKQKEKIASFK SVDVLTLSATPIPRT
Sbjct: 374 HLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRT 433
Query: 254 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 313
LYLALTGFRDASLISTPPPER+PIKTHLS+F KEKVI AIK ELDRGGQVFYVLPRIKGL
Sbjct: 434 LYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEAIKNELDRGGQVFYVLPRIKGL 493
Query: 314 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 373
EE MDFL++AFP +DIA+AHG+QYS+QLEETME+FAQG IKILICTNIVESGLDIQNANT
Sbjct: 494 EEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANT 553
Query: 374 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 433
II+QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERL+ALEECRELGQG
Sbjct: 554 IIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQG 613
Query: 434 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 493
FQLAEKDMGIRGFGTIFGEQQTGDVGNVG+DLFFEMLFESLSKV+E + SVPY V+ID
Sbjct: 614 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEELRIFSVPYDLVKID 673
Query: 494 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553
ININPRLPSEY+N+LENPME+++EAEKAAE+D+W LMQFTE+LRRQYGKEPYSMEI+LKK
Sbjct: 674 ININPRLPSEYVNYLENPMEIIHEAEKAAEKDMWSLMQFTENLRRQYGKEPYSMEIILKK 733
Query: 554 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL 613
LYVRRMAAD+G+ +IYASGKMV MKTNM+KKVFK++ DSMT +V+R+SL +EGDQI AEL
Sbjct: 734 LYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAEL 793
Query: 614 LLELPREQLLNWIFQCLAELYASLPALIKY 643
LLELPREQLLNW+FQCL+EL+ASLPALIKY
Sbjct: 794 LLELPREQLLNWMFQCLSELHASLPALIKY 823
>gi|145331730|ref|NP_001078092.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
gi|6513947|gb|AAF14851.1|AC011664_33 putative helicase [Arabidopsis thaliana]
gi|332640234|gb|AEE73755.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
Length = 822
Score = 1143 bits (2957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/630 (86%), Positives = 599/630 (95%), Gaps = 1/630 (0%)
Query: 14 IMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 73
+++ Y+ PNETKRPRTLS+LSDT+ WERRKTKGKVAIQKMVVDLMELYLHRL+QKR PY
Sbjct: 194 LLYRYNL-PNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHRLRQKRYPY 252
Query: 74 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133
PKNP +A+FAAQFPY TPDQK+AFLDVE+DLTERETPMDRLICGDVGFGKTEVALRAIF
Sbjct: 253 PKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIF 312
Query: 134 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 193
CVVS GKQAMVLAPTIVLAKQH+DV+SERFS YP IKVGLLSRFQ+KAEKEE+L+MIK G
Sbjct: 313 CVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTG 372
Query: 194 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 253
HLNIIVGTHSLLGSRVVY+NLGLLVVDEEQRFGVKQKEKIASFK SVDVLTLSATPIPRT
Sbjct: 373 HLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRT 432
Query: 254 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 313
LYLALTGFRDASLISTPPPER+PIKTHLS+F KEKVI AIK ELDRGGQVFYVLPRIKGL
Sbjct: 433 LYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEAIKNELDRGGQVFYVLPRIKGL 492
Query: 314 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 373
EE MDFL++AFP +DIA+AHG+QYS+QLEETME+FAQG IKILICTNIVESGLDIQNANT
Sbjct: 493 EEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANT 552
Query: 374 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 433
II+QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERL+ALEECRELGQG
Sbjct: 553 IIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQG 612
Query: 434 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 493
FQLAEKDMGIRGFGTIFGEQQTGDVGNVG+DLFFEMLFESLSKV+E + SVPY V+ID
Sbjct: 613 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEELRIFSVPYDLVKID 672
Query: 494 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553
ININPRLPSEY+N+LENPME+++EAEKAAE+D+W LMQFTE+LRRQYGKEPYSMEI+LKK
Sbjct: 673 ININPRLPSEYVNYLENPMEIIHEAEKAAEKDMWSLMQFTENLRRQYGKEPYSMEIILKK 732
Query: 554 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL 613
LYVRRMAAD+G+ +IYASGKMV MKTNM+KKVFK++ DSMT +V+R+SL +EGDQI AEL
Sbjct: 733 LYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAEL 792
Query: 614 LLELPREQLLNWIFQCLAELYASLPALIKY 643
LLELPREQLLNW+FQCL+EL+ASLPALIKY
Sbjct: 793 LLELPREQLLNWMFQCLSELHASLPALIKY 822
>gi|13877639|gb|AAK43897.1|AF370520_1 putative helicase [Arabidopsis thaliana]
Length = 823
Score = 1141 bits (2951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/630 (86%), Positives = 598/630 (94%), Gaps = 1/630 (0%)
Query: 14 IMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 73
+++ Y+ PNETKRPRTLS+LSDT+ WERRKTKGKVAIQKMVVDLM LYLHRL+QKR PY
Sbjct: 195 LLYRYNL-PNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMGLYLHRLRQKRYPY 253
Query: 74 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133
PKNP +A+FAAQFPY TPDQK+AFLDVE+DLTERETPMDRLICGDVGFGKTEVALRAIF
Sbjct: 254 PKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIF 313
Query: 134 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 193
CVVS GKQAMVLAPTIVLAKQH+DV+SERFS YP IKVGLLSRFQ+KAEKEE+L+MIK G
Sbjct: 314 CVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTG 373
Query: 194 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 253
HLNIIVGTHSLLGSRVVY+NLGLLVVDEEQRFGVKQKEKIASFK SVDVLTLSATPIPRT
Sbjct: 374 HLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRT 433
Query: 254 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 313
LYLALTGFRDASLISTPPPER+PIKTHLS+F KEKVI AIK ELDRGGQVFYVLPRIKGL
Sbjct: 434 LYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEAIKNELDRGGQVFYVLPRIKGL 493
Query: 314 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 373
EE MDFL++AFP +DIA+AHG+QYS+QLEETME+FAQG IKILICTNIVESGLDIQNANT
Sbjct: 494 EEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANT 553
Query: 374 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 433
II+QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERL+ALEECRELGQG
Sbjct: 554 IIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQG 613
Query: 434 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 493
FQLAEKDMGIRGFGTIFGEQQTGDVGNVG+DLFFEMLFESLSKV+E + SVPY V+ID
Sbjct: 614 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEELRIFSVPYDLVKID 673
Query: 494 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553
ININPRLPSEY+N+LENPME+++EAEKAAE+D+W LMQFTE+LRRQYGKEPYSMEI+LKK
Sbjct: 674 ININPRLPSEYVNYLENPMEIIHEAEKAAEKDMWSLMQFTENLRRQYGKEPYSMEIILKK 733
Query: 554 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL 613
LYVRRMAAD+G+ +IYASGKMV MKTNM+KKVFK++ DSMT +V+R+SL +EGDQI AEL
Sbjct: 734 LYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAEL 793
Query: 614 LLELPREQLLNWIFQCLAELYASLPALIKY 643
LLELPREQLLNW+FQCL+EL+ASLPALIKY
Sbjct: 794 LLELPREQLLNWMFQCLSELHASLPALIKY 823
>gi|25084218|gb|AAN72199.1| putative helicase [Arabidopsis thaliana]
Length = 822
Score = 1140 bits (2950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/630 (86%), Positives = 598/630 (94%), Gaps = 1/630 (0%)
Query: 14 IMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 73
+++ Y+ PNETKRPRTLS+LSDT+ WERRKTKGKVAIQKMVVDLM LYLHRL+QKR PY
Sbjct: 194 LLYRYNL-PNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMGLYLHRLRQKRYPY 252
Query: 74 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133
PKNP +A+FAAQFPY TPDQK+AFLDVE+DLTERETPMDRLICGDVGFGKTEVALRAIF
Sbjct: 253 PKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIF 312
Query: 134 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 193
CVVS GKQAMVLAPTIVLAKQH+DV+SERFS YP IKVGLLSRFQ+KAEKEE+L+MIK G
Sbjct: 313 CVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTG 372
Query: 194 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 253
HLNIIVGTHSLLGSRVVY+NLGLLVVDEEQRFGVKQKEKIASFK SVDVLTLSATPIPRT
Sbjct: 373 HLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRT 432
Query: 254 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 313
LYLALTGFRDASLISTPPPER+PIKTHLS+F KEKVI AIK ELDRGGQVFYVLPRIKGL
Sbjct: 433 LYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEAIKNELDRGGQVFYVLPRIKGL 492
Query: 314 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 373
EE MDFL++AFP +DIA+AHG+QYS+QLEETME+FAQG IKILICTNIVESGLDIQNANT
Sbjct: 493 EEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANT 552
Query: 374 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 433
II+QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERL+ALEECRELGQG
Sbjct: 553 IIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQG 612
Query: 434 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 493
FQLAEKDMGIRGFGTIFGEQQTGDVGNVG+DLFFEMLFESLSKV+E + SVPY V+ID
Sbjct: 613 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEELRIFSVPYDLVKID 672
Query: 494 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553
ININPRLPSEY+N+LENPME+++EAEKAAE+D+W LMQFTE+LRRQYGKEPYSMEI+LKK
Sbjct: 673 ININPRLPSEYVNYLENPMEIIHEAEKAAEKDMWSLMQFTENLRRQYGKEPYSMEIILKK 732
Query: 554 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL 613
LYVRRMAAD+G+ +IYASGKMV MKTNM+KKVFK++ DSMT +V+R+SL +EGDQI AEL
Sbjct: 733 LYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAEL 792
Query: 614 LLELPREQLLNWIFQCLAELYASLPALIKY 643
LLELPREQLLNW+FQCL+EL+ASLPALIKY
Sbjct: 793 LLELPREQLLNWMFQCLSELHASLPALIKY 822
>gi|312282627|dbj|BAJ34179.1| unnamed protein product [Thellungiella halophila]
Length = 823
Score = 1132 bits (2928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/633 (85%), Positives = 598/633 (94%), Gaps = 1/633 (0%)
Query: 11 CGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 70
+++ Y+ PNETKRPRTLS+LSDT+ WERRKTKGKVAIQKMVVDLMELYLHRL+QKR
Sbjct: 192 ASRLLYRYNL-PNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHRLRQKR 250
Query: 71 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130
PYPKNP +A+FAAQFPY TPDQK+AFLDV++DLTERETPMDRLICGDVGFGKTEVALR
Sbjct: 251 YPYPKNPIMADFAAQFPYNATPDQKQAFLDVDKDLTERETPMDRLICGDVGFGKTEVALR 310
Query: 131 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190
AIFCVVSAGKQAMVLAPTIVLAKQH+DV+SERFS YP IKVGLLSRFQ+KAEKEE+L+MI
Sbjct: 311 AIFCVVSAGKQAMVLAPTIVLAKQHYDVISERFSLYPQIKVGLLSRFQTKAEKEEYLEMI 370
Query: 191 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 250
K+G LNIIVGTHSLLGSRVVY+NLGLLVVDEEQRFGVKQKEKIASFK SVDVLTLSATPI
Sbjct: 371 KNGDLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPI 430
Query: 251 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 310
PRTLYLALTGFRDASLISTPPPER+PIKTHLS+F KEKVI AIK ELDRGGQVFYVLPRI
Sbjct: 431 PRTLYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEAIKNELDRGGQVFYVLPRI 490
Query: 311 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370
KGLEE M+FL++AFP +DIA+AHG++YS+QLEETME+FAQG IKILICTNIVESGLDIQN
Sbjct: 491 KGLEEVMNFLEEAFPDIDIAMAHGKRYSKQLEETMERFAQGKIKILICTNIVESGLDIQN 550
Query: 371 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 430
ANTII+QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERL+ALEECREL
Sbjct: 551 ANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECREL 610
Query: 431 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 490
GQGFQLAE+DMGIRGFGTIFGEQQTGDVGNVG+DLFFEMLFESLSKV+E + SVPY V
Sbjct: 611 GQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEELRIFSVPYNLV 670
Query: 491 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 550
+IDI+INPRLPSEY+N+LENPME++NEAEKAAE+D+W LMQFTE+LRRQYGKEPYSMEI+
Sbjct: 671 KIDIDINPRLPSEYVNYLENPMEIINEAEKAAEKDMWSLMQFTENLRRQYGKEPYSMEII 730
Query: 551 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 610
LKKLYVRRMAAD+G+ +IYASGK+V MKTNM+KKVF ++ DSMT +V+R+SL EGDQI
Sbjct: 731 LKKLYVRRMAADLGVNRIYASGKIVVMKTNMSKKVFNLIKDSMTCDVYRSSLIHEGDQIM 790
Query: 611 AELLLELPREQLLNWIFQCLAELYASLPALIKY 643
AELLLELPREQLLNW+FQCL+EL+ASLPALIKY
Sbjct: 791 AELLLELPREQLLNWMFQCLSELHASLPALIKY 823
>gi|225451661|ref|XP_002276313.1| PREDICTED: transcription-repair-coupling factor-like [Vitis
vinifera]
Length = 823
Score = 1127 bits (2916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/630 (84%), Positives = 597/630 (94%), Gaps = 1/630 (0%)
Query: 14 IMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 73
+++ Y+ P+E+KRPRTLSKLSDT+ WERR+ KG+VAIQKMVVDLMELYLHRLKQKRPPY
Sbjct: 195 MLYRYNL-PSESKRPRTLSKLSDTSIWERRRIKGRVAIQKMVVDLMELYLHRLKQKRPPY 253
Query: 74 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133
PK+P +AEF AQF YEPTPDQK+AF+DVE DLTERETPMDRLICGDVGFGKTEVALRAIF
Sbjct: 254 PKSPGMAEFEAQFSYEPTPDQKQAFIDVEEDLTERETPMDRLICGDVGFGKTEVALRAIF 313
Query: 134 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 193
CVVSAGKQAMVLAPTIVLAKQHFDV++ERFSKYP+IKVGLLSRFQ+ AEKE+HL MIKHG
Sbjct: 314 CVVSAGKQAMVLAPTIVLAKQHFDVITERFSKYPNIKVGLLSRFQTTAEKEKHLRMIKHG 373
Query: 194 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 253
L+IIVGTHSLLG+RVVY+NLGLLVVDEEQRFGVKQKEKIASFK SVDVLTLSATPIPRT
Sbjct: 374 DLDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRT 433
Query: 254 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 313
LYLALTGFRDASLISTPPPER+PI THLSA++KEK+ISAIK+EL RGGQ+FYVLPRIKGL
Sbjct: 434 LYLALTGFRDASLISTPPPERVPIITHLSAYNKEKIISAIKFELGRGGQIFYVLPRIKGL 493
Query: 314 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 373
EE M+FL+ +FP V+IAIAHG+QYS+QLEETM++FAQG IKILICTNIVESGLDIQNANT
Sbjct: 494 EEVMEFLECSFPDVEIAIAHGKQYSKQLEETMDRFAQGEIKILICTNIVESGLDIQNANT 553
Query: 374 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 433
II+Q+VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERL+ALEECR+LGQG
Sbjct: 554 IIIQEVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRDLGQG 613
Query: 434 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 493
FQLAE+DMGIRGFG IFGEQQTGDVGNVG+DLFFEMLFESLSKV+EH +ISVPY+SVQ D
Sbjct: 614 FQLAERDMGIRGFGNIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRLISVPYQSVQFD 673
Query: 494 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553
ININP LPSEYIN+LENPME+++EAEK+AE+DIW LMQFTE+LRRQYGKEPYSME+LLKK
Sbjct: 674 ININPHLPSEYINYLENPMEIISEAEKSAEEDIWSLMQFTENLRRQYGKEPYSMEVLLKK 733
Query: 554 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL 613
LYV+RMAAD+GIT+IYASGK V M+T MNKKVFK++ DSM S++ RNSL FE +QIKAEL
Sbjct: 734 LYVKRMAADLGITRIYASGKTVIMRTKMNKKVFKLITDSMASDIIRNSLVFEENQIKAEL 793
Query: 614 LLELPREQLLNWIFQCLAELYASLPALIKY 643
LLELPREQ LNW+FQCLAEL+ASLPALIKY
Sbjct: 794 LLELPREQFLNWVFQCLAELHASLPALIKY 823
>gi|296082243|emb|CBI21248.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 1127 bits (2916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/630 (84%), Positives = 597/630 (94%), Gaps = 1/630 (0%)
Query: 14 IMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 73
+++ Y+ P+E+KRPRTLSKLSDT+ WERR+ KG+VAIQKMVVDLMELYLHRLKQKRPPY
Sbjct: 12 MLYRYNL-PSESKRPRTLSKLSDTSIWERRRIKGRVAIQKMVVDLMELYLHRLKQKRPPY 70
Query: 74 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133
PK+P +AEF AQF YEPTPDQK+AF+DVE DLTERETPMDRLICGDVGFGKTEVALRAIF
Sbjct: 71 PKSPGMAEFEAQFSYEPTPDQKQAFIDVEEDLTERETPMDRLICGDVGFGKTEVALRAIF 130
Query: 134 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 193
CVVSAGKQAMVLAPTIVLAKQHFDV++ERFSKYP+IKVGLLSRFQ+ AEKE+HL MIKHG
Sbjct: 131 CVVSAGKQAMVLAPTIVLAKQHFDVITERFSKYPNIKVGLLSRFQTTAEKEKHLRMIKHG 190
Query: 194 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 253
L+IIVGTHSLLG+RVVY+NLGLLVVDEEQRFGVKQKEKIASFK SVDVLTLSATPIPRT
Sbjct: 191 DLDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRT 250
Query: 254 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 313
LYLALTGFRDASLISTPPPER+PI THLSA++KEK+ISAIK+EL RGGQ+FYVLPRIKGL
Sbjct: 251 LYLALTGFRDASLISTPPPERVPIITHLSAYNKEKIISAIKFELGRGGQIFYVLPRIKGL 310
Query: 314 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 373
EE M+FL+ +FP V+IAIAHG+QYS+QLEETM++FAQG IKILICTNIVESGLDIQNANT
Sbjct: 311 EEVMEFLECSFPDVEIAIAHGKQYSKQLEETMDRFAQGEIKILICTNIVESGLDIQNANT 370
Query: 374 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 433
II+Q+VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERL+ALEECR+LGQG
Sbjct: 371 IIIQEVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRDLGQG 430
Query: 434 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 493
FQLAE+DMGIRGFG IFGEQQTGDVGNVG+DLFFEMLFESLSKV+EH +ISVPY+SVQ D
Sbjct: 431 FQLAERDMGIRGFGNIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRLISVPYQSVQFD 490
Query: 494 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553
ININP LPSEYIN+LENPME+++EAEK+AE+DIW LMQFTE+LRRQYGKEPYSME+LLKK
Sbjct: 491 ININPHLPSEYINYLENPMEIISEAEKSAEEDIWSLMQFTENLRRQYGKEPYSMEVLLKK 550
Query: 554 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL 613
LYV+RMAAD+GIT+IYASGK V M+T MNKKVFK++ DSM S++ RNSL FE +QIKAEL
Sbjct: 551 LYVKRMAADLGITRIYASGKTVIMRTKMNKKVFKLITDSMASDIIRNSLVFEENQIKAEL 610
Query: 614 LLELPREQLLNWIFQCLAELYASLPALIKY 643
LLELPREQ LNW+FQCLAEL+ASLPALIKY
Sbjct: 611 LLELPREQFLNWVFQCLAELHASLPALIKY 640
>gi|356560412|ref|XP_003548486.1| PREDICTED: transcription-repair-coupling factor-like [Glycine max]
Length = 826
Score = 1127 bits (2915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/633 (84%), Positives = 593/633 (93%), Gaps = 1/633 (0%)
Query: 11 CGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 70
+++ Y PNETK+P+ LSKLSDT+AWE+RK KGKVAIQKMVVDLMELYLHRLKQ+R
Sbjct: 195 AAKMLYRYSL-PNETKKPKALSKLSDTSAWEKRKVKGKVAIQKMVVDLMELYLHRLKQRR 253
Query: 71 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130
P YPK+PA+AEFAA FPYEPTPDQK+AF+DVERDLTERETPMDRLICGDVGFGKTEVALR
Sbjct: 254 PLYPKSPAMAEFAALFPYEPTPDQKRAFIDVERDLTERETPMDRLICGDVGFGKTEVALR 313
Query: 131 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190
AI CVVSA KQAMVLAPTIVLAKQHFDV+SERFS YPDIKVGLLSRFQ+KAEKEE+LD I
Sbjct: 314 AISCVVSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTKAEKEENLDKI 373
Query: 191 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 250
K+G L+IIVGTHSLLG RV YNNLGLLVVDEEQRFGVKQKEKIASFK SVDVLTLSATPI
Sbjct: 374 KNGSLDIIVGTHSLLGDRVTYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPI 433
Query: 251 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 310
PRTLYLALTGFRDASL+STPPPER+PIKTHLS+FS++KV+SAIKYELDRGGQVFYVLPRI
Sbjct: 434 PRTLYLALTGFRDASLMSTPPPERVPIKTHLSSFSEDKVVSAIKYELDRGGQVFYVLPRI 493
Query: 311 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370
KGL+E M FL ++FP V+IAIAHG+ YS+QLE+TMEKFA G IKILICTNIVESGLDIQN
Sbjct: 494 KGLDEVMTFLAESFPNVEIAIAHGKLYSKQLEDTMEKFALGEIKILICTNIVESGLDIQN 553
Query: 371 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 430
ANTII+QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA+EECREL
Sbjct: 554 ANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAAIEECREL 613
Query: 431 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 490
GQGFQLAEKDMGIRGFG IFGEQQ+GDVGNVG+DLFFEMLFESLSKV++H V+SVPY SV
Sbjct: 614 GQGFQLAEKDMGIRGFGAIFGEQQSGDVGNVGIDLFFEMLFESLSKVEDHRVVSVPYHSV 673
Query: 491 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 550
Q+DININP LPS+YIN+LENP++++N+AE+ AE+DIW LMQFTE+LRRQYGKEP SMEIL
Sbjct: 674 QVDININPHLPSDYINYLENPLKIINDAERVAEKDIWSLMQFTENLRRQYGKEPRSMEIL 733
Query: 551 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 610
LKKLY+RRMAAD+GIT IY+SGKM+ MKTNM+KKVFKMM +SM S++HRNSL EGDQIK
Sbjct: 734 LKKLYLRRMAADLGITSIYSSGKMIYMKTNMSKKVFKMMTESMASDLHRNSLVLEGDQIK 793
Query: 611 AELLLELPREQLLNWIFQCLAELYASLPALIKY 643
AELLLELP+EQLLNWIFQCLAEL+ASLP+ IKY
Sbjct: 794 AELLLELPKEQLLNWIFQCLAELHASLPSFIKY 826
>gi|356570277|ref|XP_003553316.1| PREDICTED: transcription-repair-coupling factor-like [Glycine max]
Length = 823
Score = 1124 bits (2906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/633 (84%), Positives = 592/633 (93%), Gaps = 1/633 (0%)
Query: 11 CGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 70
+++ Y PNETK+P+ LSKLSDT+AWERRK KGKVAIQKMVVDLMELYLHRLKQ+R
Sbjct: 192 AAKMLYRYSL-PNETKKPKALSKLSDTSAWERRKVKGKVAIQKMVVDLMELYLHRLKQRR 250
Query: 71 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130
PPYPK+PA+A+FAAQF YEPTPDQK+AF+DVERDLTERETPMDRLICGDVGFGKTEVALR
Sbjct: 251 PPYPKSPAMAKFAAQFRYEPTPDQKRAFIDVERDLTERETPMDRLICGDVGFGKTEVALR 310
Query: 131 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190
AI CVVSA KQAMVLAPTIVLAKQHFDV+SERFS YPDIKVGLLSRFQ+KAEKEE+LD I
Sbjct: 311 AISCVVSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTKAEKEENLDKI 370
Query: 191 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 250
K+G L+IIVGTHSLLG RV YNNLGLLVVDEEQRFGVKQKEKIASFK SVDVLTLSATPI
Sbjct: 371 KNGTLDIIVGTHSLLGDRVTYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPI 430
Query: 251 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 310
PRTLYLALTGFRDASL+STPPPER+PIKTHLS+F ++KV+SAIKYELDRGGQVFYVLPRI
Sbjct: 431 PRTLYLALTGFRDASLMSTPPPERVPIKTHLSSFGEDKVVSAIKYELDRGGQVFYVLPRI 490
Query: 311 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370
KGL+ M FL ++FP V+IAIAHG+ YS+QLE+TMEKFA G IKILICTNIVESGLDIQN
Sbjct: 491 KGLDGVMAFLVESFPNVEIAIAHGKLYSKQLEDTMEKFALGEIKILICTNIVESGLDIQN 550
Query: 371 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 430
ANTII+QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK LLSDQALERLAA+EECREL
Sbjct: 551 ANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKGLLSDQALERLAAIEECREL 610
Query: 431 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 490
GQGFQLAEKDMGIRGFG IFGEQQ+GDVGNVG+DLFFEMLFESLSKV++H V+SVPY SV
Sbjct: 611 GQGFQLAEKDMGIRGFGAIFGEQQSGDVGNVGIDLFFEMLFESLSKVEDHHVVSVPYHSV 670
Query: 491 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 550
Q+DININP LPS+YIN+L+NPM+++N+AE+ AE+DIW LMQFTE+LRRQYGKEP SMEIL
Sbjct: 671 QVDININPHLPSDYINYLDNPMKIINDAERVAEKDIWSLMQFTENLRRQYGKEPRSMEIL 730
Query: 551 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 610
LKKLY+RRMAAD+GIT+IY+SGKM+ MKTNM+KKVFKMM +SM S++HRNSL EGDQIK
Sbjct: 731 LKKLYLRRMAADLGITRIYSSGKMIYMKTNMSKKVFKMMTESMASDLHRNSLVLEGDQIK 790
Query: 611 AELLLELPREQLLNWIFQCLAELYASLPALIKY 643
AELLLELP+EQLLNWIFQCLAEL+ASLP+ IKY
Sbjct: 791 AELLLELPKEQLLNWIFQCLAELHASLPSFIKY 823
>gi|449464970|ref|XP_004150202.1| PREDICTED: transcription-repair-coupling factor-like [Cucumis
sativus]
gi|449515466|ref|XP_004164770.1| PREDICTED: transcription-repair-coupling factor-like [Cucumis
sativus]
Length = 827
Score = 1106 bits (2861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/622 (84%), Positives = 584/622 (93%)
Query: 22 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE 81
PNE KRPRTLSKL+DTT WE+RKTKGK+AIQKMVVDLMELYLHRLKQ+R PYPK A+ E
Sbjct: 206 PNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLMELYLHRLKQRRSPYPKCSAMEE 265
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F+AQFPYEPT DQK+AF DVE+DLT RETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ
Sbjct: 266 FSAQFPYEPTVDQKEAFRDVEKDLTGRETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 325
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
AMVLAPTIVLAKQHF+V+++RFS +PD+++GLLSRFQ+KAEKE+HL+MIK G LNIIVGT
Sbjct: 326 AMVLAPTIVLAKQHFEVITQRFSSFPDVQIGLLSRFQTKAEKEKHLEMIKEGQLNIIVGT 385
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
HSLLG RVVY+NLGLLVVDEEQRFGVKQKEKIASFK SVDVLTLSATPIPRTLYLALTGF
Sbjct: 386 HSLLGDRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGF 445
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RDASLI+TPPPER+PIKTHLS+FSKEKV SAIKYEL+RGGQVFYVLPRIKGLEE +FL+
Sbjct: 446 RDASLITTPPPERVPIKTHLSSFSKEKVKSAIKYELERGGQVFYVLPRIKGLEEVKEFLE 505
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+FP ++IA+AHG+QYS+QLEETME FA G IKILICTNIVESGLDIQNANTIIVQDVQQ
Sbjct: 506 ASFPDIEIALAHGKQYSKQLEETMENFALGDIKILICTNIVESGLDIQNANTIIVQDVQQ 565
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
FGLAQLYQLRGRVGRADKEA+AYLFYPDKSLLSD ALERLAALEECRELGQGFQLAE+DM
Sbjct: 566 FGLAQLYQLRGRVGRADKEAYAYLFYPDKSLLSDDALERLAALEECRELGQGFQLAERDM 625
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
GIRGFGTIFGEQQTGDVGNVG+DLFFEMLF+SLSKVDEH V+SVPY+SV+IDI+INP LP
Sbjct: 626 GIRGFGTIFGEQQTGDVGNVGIDLFFEMLFDSLSKVDEHRVVSVPYQSVKIDIDINPHLP 685
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
SEYIN+LENPM+++N AE+AAE DIW LMQFTE+LRR +GKEPYSMEILLKKLYVRRMAA
Sbjct: 686 SEYINYLENPMKILNGAERAAETDIWTLMQFTENLRRHHGKEPYSMEILLKKLYVRRMAA 745
Query: 562 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQ 621
D+GI++IYASGK V M+TNMNKKVFK++ DSMTSEVHRN L+FE QIKA LLLELPREQ
Sbjct: 746 DLGISRIYASGKTVCMETNMNKKVFKLISDSMTSEVHRNCLSFEEHQIKAGLLLELPREQ 805
Query: 622 LLNWIFQCLAELYASLPALIKY 643
LLNWIF+CL EL+AS PALIKY
Sbjct: 806 LLNWIFECLVELHASFPALIKY 827
>gi|255543481|ref|XP_002512803.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223547814|gb|EEF49306.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 857
Score = 1070 bits (2766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/589 (85%), Positives = 559/589 (94%)
Query: 22 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE 81
PNE KRPRTL+KL+DT+ WE+RKTKGK+AIQKMVVDLMELYLHRLKQ+RPPYPK+P +AE
Sbjct: 204 PNEKKRPRTLNKLNDTSTWEKRKTKGKIAIQKMVVDLMELYLHRLKQRRPPYPKSPVMAE 263
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F AQFPYEPTPDQ +AF DVE+DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ
Sbjct: 264 FTAQFPYEPTPDQFQAFNDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 323
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
AMVLAPTIVLAKQHF+V+SERFSKY +IKVGLLSRFQ+++ KE + +MIK G LNI+VGT
Sbjct: 324 AMVLAPTIVLAKQHFEVISERFSKYSNIKVGLLSRFQTQSVKEMYYEMIKQGDLNIVVGT 383
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFK SVDVLTLSATPIPRTLYLALTGF
Sbjct: 384 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGF 443
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RDASLIST PPER+P+KT LSA+SKEKVISAIKYELDR GQVFYVLP IKGLEE MDFL+
Sbjct: 444 RDASLISTAPPERVPVKTFLSAYSKEKVISAIKYELDRDGQVFYVLPLIKGLEEVMDFLE 503
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
Q+FP V+ AIAHG+QYS+QLEETMEKF QG IKILICTNIVESGLDIQNANTII+QD+Q
Sbjct: 504 QSFPKVEKAIAHGKQYSKQLEETMEKFVQGEIKILICTNIVESGLDIQNANTIIIQDIQH 563
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
FGLAQLYQLRGRVGRADKEA+A+LFYPDKSLLSDQALERL ALEEC+ELGQGFQLAE+DM
Sbjct: 564 FGLAQLYQLRGRVGRADKEAYAHLFYPDKSLLSDQALERLKALEECKELGQGFQLAERDM 623
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
GIRGFGTIFGEQQTGDVGNVG+DLFFEMLFESLSKV+EH V++V Y+SVQID+N+NP LP
Sbjct: 624 GIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVSYQSVQIDLNVNPHLP 683
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
S+YIN+LENPME++++AEKAAE+DIW LMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA
Sbjct: 684 SDYINYLENPMEIISQAEKAAEKDIWSLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 743
Query: 562 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 610
D+GI +IYASGKMVGMKTN++KKVFK+MIDSMTS+VHRNSL F+GDQIK
Sbjct: 744 DLGIRRIYASGKMVGMKTNLSKKVFKLMIDSMTSDVHRNSLEFDGDQIK 792
>gi|224069623|ref|XP_002303013.1| predicted protein [Populus trichocarpa]
gi|222844739|gb|EEE82286.1| predicted protein [Populus trichocarpa]
Length = 939
Score = 1051 bits (2717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/643 (79%), Positives = 567/643 (88%), Gaps = 47/643 (7%)
Query: 14 IMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 73
+++ Y+ PN+TK+PRTLSKLSD AWERRKTKGKVAIQKMVVDLMELYLHRLKQ+RPPY
Sbjct: 191 MLYRYNL-PNDTKKPRTLSKLSDNGAWERRKTKGKVAIQKMVVDLMELYLHRLKQRRPPY 249
Query: 74 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133
PK PA+ +F+AQFPYEPTPDQK+AF+DV RDLTERETPMDRLICGDVGFGKTEVALRAIF
Sbjct: 250 PKTPAMVDFSAQFPYEPTPDQKQAFIDVMRDLTERETPMDRLICGDVGFGKTEVALRAIF 309
Query: 134 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQ------SKAEKEEHL 187
CVVSAGKQAMVLAPTIVLA+QHFDV+SERFSKYP IKV LLSRFQ SKAEKE +L
Sbjct: 310 CVVSAGKQAMVLAPTIVLARQHFDVISERFSKYPHIKVALLSRFQAYLLLQSKAEKEMYL 369
Query: 188 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQ------------------------ 223
+M KHGHL+IIVGTHSLLGSRVVYNNLGLLVVDEEQ
Sbjct: 370 EMTKHGHLDIIVGTHSLLGSRVVYNNLGLLVVDEEQTTNKRKGKGNFSINHDFANEKEKK 429
Query: 224 ---RFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTH 280
RFGVKQKEKIASFK SVDVLTL+ATPIPRTLYLALTGFRDASLISTPPPER+PIKTH
Sbjct: 430 ESRRFGVKQKEKIASFKTSVDVLTLTATPIPRTLYLALTGFRDASLISTPPPERVPIKTH 489
Query: 281 LSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ----- 335
LSA+SKE++ISAIKYELDRGGQVFYVLPRIKGLEE DFL+Q+F V+IA+AHGQ
Sbjct: 490 LSAYSKERLISAIKYELDRGGQVFYVLPRIKGLEEVKDFLEQSFSNVEIAVAHGQHVTKK 549
Query: 336 --------QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 387
QYS+ LE+TME+FAQG IKILICTNIVESGLDIQNANTII+QDVQ FGLAQL
Sbjct: 550 GNSFLLVKQYSKLLEDTMEQFAQGEIKILICTNIVESGLDIQNANTIIIQDVQLFGLAQL 609
Query: 388 YQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFG 447
YQLRGRVGRADKEAHA+LFYPDKS+L+DQALERLAALEEC+ELG+GFQLAE+DMGIRGFG
Sbjct: 610 YQLRGRVGRADKEAHAHLFYPDKSMLTDQALERLAALEECQELGRGFQLAERDMGIRGFG 669
Query: 448 TIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINH 507
TIFGEQQTGDVGNVG+D FFEMLFESLSKVDEH VISVPY+SVQ+D+NINP LPS+YIN
Sbjct: 670 TIFGEQQTGDVGNVGIDFFFEMLFESLSKVDEHRVISVPYQSVQVDLNINPHLPSDYINS 729
Query: 508 LENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITK 567
LENPME++NEAEKAAE DIW LMQFTE+LR QYGKEP SMEILLKKLY+RRMAADIGIT+
Sbjct: 730 LENPMEIINEAEKAAETDIWSLMQFTENLRCQYGKEPCSMEILLKKLYIRRMAADIGITR 789
Query: 568 IYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 610
IYASGKMVGM+TNM+KKVFK+M DSM+S++HRNSL F+G+QIK
Sbjct: 790 IYASGKMVGMETNMSKKVFKLMADSMSSDIHRNSLVFDGNQIK 832
>gi|125534627|gb|EAY81175.1| hypothetical protein OsI_36354 [Oryza sativa Indica Group]
Length = 640
Score = 929 bits (2400), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/633 (67%), Positives = 541/633 (85%), Gaps = 1/633 (0%)
Query: 11 CGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 70
+++ Y+ P+E +RPR LSKL+D + WE+R+ KGK+A+QKMVV+LMELYL R++QKR
Sbjct: 9 AARMLYRYNL-PHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKR 67
Query: 71 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130
PPYPK + +F A+FPYEPTPDQ +AF+DV++DLTERETPMDRLICGDVGFGKTEVA+R
Sbjct: 68 PPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMR 127
Query: 131 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190
AIF V+SAG QAMVLAPT++LAKQH+DV+SERFS YPDIKV + S Q+K EK+E + I
Sbjct: 128 AIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKI 187
Query: 191 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 250
++G L+IIVGTH++L R+ YNNLGLLVVDEEQ+FGV+QKEKIAS+K S+DVLTLSATPI
Sbjct: 188 RNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPI 247
Query: 251 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 310
PRTLYLALTGFRDASL+STPPPER+ ++T++S FSKE+ +SAIK+EL RGGQVFYV+PRI
Sbjct: 248 PRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRI 307
Query: 311 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370
K +++ + FL+ + P V +A+AHG++ S+ ++ MEKFA G +KIL+CT+I+ESG+DI N
Sbjct: 308 KAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPN 367
Query: 371 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 430
ANT++VQ + FGLAQLYQLRGRVGR+ E AYLFY DKSLLS A +RL A+EE +L
Sbjct: 368 ANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDL 427
Query: 431 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 490
GQGF +AEKDMGIRGFG++FGEQQ+GDV NVG+DLFF+MLF+SLSKVD+ C+I VPYK V
Sbjct: 428 GQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCLIPVPYKDV 487
Query: 491 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 550
Q+DINI+ RL SEYI++LENP+E++NEA KAAE+D+W L+QFTE LRRQYGKEP ME+L
Sbjct: 488 QLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRQYGKEPRDMELL 547
Query: 551 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 610
LKKLYVRRMAAD+GI++IY+SGKM+ MKTNMNKKVF++M ++M+ E HRNSL+F G +IK
Sbjct: 548 LKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFRLMREAMSLETHRNSLSFTGKEIK 607
Query: 611 AELLLELPREQLLNWIFQCLAELYASLPALIKY 643
ELL+ LP LLNW+F CLA+ YA +PAL+KY
Sbjct: 608 GELLVNLPDTLLLNWLFHCLADCYAVIPALVKY 640
>gi|108864446|gb|ABA94062.2| CarD-like transcriptional regulator family protein, expressed
[Oryza sativa Japonica Group]
Length = 832
Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/633 (67%), Positives = 541/633 (85%), Gaps = 1/633 (0%)
Query: 11 CGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 70
+++ Y+ P+E +RPR LSKL+D + WE+R+ KGK+A+QKMVV+LMELYL R++QKR
Sbjct: 201 AARMLYRYNL-PHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKR 259
Query: 71 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130
PPYPK + +F A+FPYEPTPDQ +AF+DV++DLTERETPMDRLICGDVGFGKTEVA+R
Sbjct: 260 PPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMR 319
Query: 131 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190
AIF V+SAG QAMVLAPT++LAKQH+DV+SERFS YPDIKV + S Q+K EK+E + I
Sbjct: 320 AIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKI 379
Query: 191 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 250
++G L+IIVGTH++L R+ YNNLGLLVVDEEQ+FGV+QKEKIAS+K S+DVLTLSATPI
Sbjct: 380 RNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPI 439
Query: 251 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 310
PRTLYLALTGFRDASL+STPPPER+ ++T++S FSKE+ +SAIK+EL RGGQVFYV+PRI
Sbjct: 440 PRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRI 499
Query: 311 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370
K +++ + FL+ + P V +A+AHG++ S+ ++ MEKFA G +KIL+CT+I+ESG+DI N
Sbjct: 500 KAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPN 559
Query: 371 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 430
ANT++VQ + FGLAQLYQLRGRVGR+ E AYLFY DKSLLS A +RL A+EE +L
Sbjct: 560 ANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDL 619
Query: 431 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 490
GQGF +AEKDMGIRGFG++FGEQQ+GDV NVG+DLFF+MLF+SLSKVD+ C+I VPYK V
Sbjct: 620 GQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCLIPVPYKDV 679
Query: 491 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 550
Q+DINI+ RL SEYI++LENP+E++NEA KAAE+D+W L+QFTE LRRQYGKEP ME+L
Sbjct: 680 QLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRQYGKEPRDMELL 739
Query: 551 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 610
LKKLYVRRMAAD+GI++IY+SGKM+ MKTNMNKKVF++M ++M+ E HRNSL+F G +IK
Sbjct: 740 LKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFRLMREAMSLETHRNSLSFTGKEIK 799
Query: 611 AELLLELPREQLLNWIFQCLAELYASLPALIKY 643
ELL+ LP LLNW+F CLA+ YA +PAL+KY
Sbjct: 800 GELLVNLPDTLLLNWLFHCLADCYAVIPALVKY 832
>gi|125577373|gb|EAZ18595.1| hypothetical protein OsJ_34121 [Oryza sativa Japonica Group]
Length = 832
Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/633 (67%), Positives = 541/633 (85%), Gaps = 1/633 (0%)
Query: 11 CGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 70
+++ Y+ P+E +RPR LSKL+D + WE+R+ KGK+A+QKMVV+LMELYL R++QKR
Sbjct: 201 AARMLYRYNL-PHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKR 259
Query: 71 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130
PPYPK + +F A+FPYEPTPDQ +AF+DV++DLTERETPMDRLICGDVGFGKTEVA+R
Sbjct: 260 PPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMR 319
Query: 131 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190
AIF V+SAG QAMVLAPT++LAKQH+DV+SERFS YPDIKV + S Q+K EK+E + I
Sbjct: 320 AIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKI 379
Query: 191 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 250
++G L+IIVGTH++L R+ YNNLGLLVVDEEQ+FGV+QKEKIAS+K S+DVLTLSATPI
Sbjct: 380 RNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPI 439
Query: 251 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 310
PRTLYLALTGFRDASL+STPPPER+ ++T++S FSKE+ +SAIK+EL RGGQVFYV+PRI
Sbjct: 440 PRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRI 499
Query: 311 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370
K +++ + FL+ + P V +A+AHG++ S+ ++ MEKFA G +KIL+CT+I+ESG+DI N
Sbjct: 500 KAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPN 559
Query: 371 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 430
ANT++VQ + FGLAQLYQLRGRVGR+ E AYLFY DKSLLS A +RL A+EE +L
Sbjct: 560 ANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDL 619
Query: 431 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 490
GQGF +AEKDMGIRGFG++FGEQQ+GDV NVG+DLFF+MLF+SLSKVD+ C+I VPYK V
Sbjct: 620 GQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCLIPVPYKDV 679
Query: 491 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 550
Q+DINI+ RL SEYI++LENP+E++NEA KAAE+D+W L+QFTE LRRQYGKEP ME+L
Sbjct: 680 QLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRQYGKEPRDMELL 739
Query: 551 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 610
LKKLYVRRMAAD+GI++IY+SGKM+ MKTNMNKKVF++M ++M+ E HRNSL+F G +IK
Sbjct: 740 LKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFRLMREAMSLETHRNSLSFTGKEIK 799
Query: 611 AELLLELPREQLLNWIFQCLAELYASLPALIKY 643
ELL+ LP LLNW+F CLA+ YA +PAL+KY
Sbjct: 800 GELLVNLPDTLLLNWLFHCLADCYAVIPALVKY 832
>gi|297611935|ref|NP_001068018.2| Os11g0533100 [Oryza sativa Japonica Group]
gi|255680143|dbj|BAF28381.2| Os11g0533100, partial [Oryza sativa Japonica Group]
Length = 823
Score = 927 bits (2397), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/623 (68%), Positives = 537/623 (86%)
Query: 21 RPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 80
RP+E +RPR LSKL+D + WE+R+ KGK+A+QKMVV+LMELYL R++QKRPPYPK +
Sbjct: 201 RPHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMD 260
Query: 81 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 140
+F A+FPYEPTPDQ +AF+DV++DLTERETPMDRLICGDVGFGKTEVA+RAIF V+SAG
Sbjct: 261 QFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGF 320
Query: 141 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 200
QAMVLAPT++LAKQH+DV+SERFS YPDIKV + S Q+K EK+E + I++G L+IIVG
Sbjct: 321 QAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVG 380
Query: 201 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 260
TH++L R+ YNNLGLLVVDEEQ+FGV+QKEKIAS+K S+DVLTLSATPIPRTLYLALTG
Sbjct: 381 THAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTG 440
Query: 261 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 320
FRDASL+STPPPER+ ++T++S FSKE+ +SAIK+EL RGGQVFYV+PRIK +++ + FL
Sbjct: 441 FRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFL 500
Query: 321 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 380
+ + P V +A+AHG++ S+ ++ MEKFA G +KIL+CT+I+ESG+DI NANT++VQ +
Sbjct: 501 KDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAE 560
Query: 381 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKD 440
FGLAQLYQLRGRVGR+ E AYLFY DKSLLS A +RL A+EE +LGQGF +AEKD
Sbjct: 561 LFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKD 620
Query: 441 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 500
MGIRGFG++FGEQQ+GDV NVG+DLFF+MLF+SLSKVD+ C+I VPYK VQ+DINI+ RL
Sbjct: 621 MGIRGFGSLFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCLIPVPYKDVQLDINISSRL 680
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
SEYI++LENP+E++NEA KAAE+D+W L+QFTE LRRQYGKEP ME+LLKKLYVRRMA
Sbjct: 681 SSEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRQYGKEPRDMELLLKKLYVRRMA 740
Query: 561 ADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPRE 620
AD+GI++IY+SGKM+ MKTNMNKKVF++M ++M+ E HRNSL+F G +IK ELL+ LP
Sbjct: 741 ADLGISRIYSSGKMIIMKTNMNKKVFRLMREAMSLETHRNSLSFTGKEIKGELLVNLPDT 800
Query: 621 QLLNWIFQCLAELYASLPALIKY 643
LLNW+F CLA+ YA +PAL+KY
Sbjct: 801 LLLNWLFHCLADCYAVIPALVKY 823
>gi|242068687|ref|XP_002449620.1| hypothetical protein SORBIDRAFT_05g020300 [Sorghum bicolor]
gi|241935463|gb|EES08608.1| hypothetical protein SORBIDRAFT_05g020300 [Sorghum bicolor]
Length = 834
Score = 927 bits (2396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/633 (67%), Positives = 542/633 (85%), Gaps = 1/633 (0%)
Query: 11 CGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 70
+++ Y+ P+E RPR LSKL+D + WE+R+ KGK+A+QKMVV+LMELYL R++ R
Sbjct: 203 AARMLYRYNL-PHEKTRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRLGR 261
Query: 71 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130
PPYPK ++ +FAA+FPYEPTPDQ +AF+DVE+DLTERETPMDRLICGDVGFGKTEVA+R
Sbjct: 262 PPYPKPASMDDFAAEFPYEPTPDQCQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAMR 321
Query: 131 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190
AIF VVSAG QAMVLAPTI+LAKQH+DV++ERF+ YP+IK+ + S QSK EK+E + I
Sbjct: 322 AIFIVVSAGFQAMVLAPTIILAKQHYDVMTERFANYPEIKIAIFSGAQSKEEKDELITKI 381
Query: 191 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 250
K+G L+IIVGTH+LL R+VY+NLGLLVVDEEQ+FGV+QKEKIAS+K S+DVLTLSATPI
Sbjct: 382 KNGDLHIIVGTHALLTERMVYSNLGLLVVDEEQKFGVQQKEKIASYKSSIDVLTLSATPI 441
Query: 251 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 310
PRTLYLALTGFRDASL+STPPPER+ +KT++SAFSKE+ +SAIK+EL RGGQVFYV+PRI
Sbjct: 442 PRTLYLALTGFRDASLMSTPPPERVAVKTYVSAFSKERALSAIKFELQRGGQVFYVVPRI 501
Query: 311 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370
K +++ + FL+ + P V IA+AHG++ S+ ++ ME FA G +KIL+CT+I+ESG+DI N
Sbjct: 502 KAIDDVLQFLKDSLPDVPIAVAHGKKMSKSIQLAMEDFASGEVKILVCTHIIESGIDIAN 561
Query: 371 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 430
ANT+IVQ + +GLAQLYQLRGRVGR+ +E AYLFY DKSLLS A +RL A+EE EL
Sbjct: 562 ANTMIVQFAELYGLAQLYQLRGRVGRSGREGFAYLFYTDKSLLSRVATDRLGAIEEHSEL 621
Query: 431 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 490
GQGF +AEKDMGIRGFG++FG+QQ+GDV NVG+DLFF+MLF+SLSKVD+ C++ V YK V
Sbjct: 622 GQGFHVAEKDMGIRGFGSLFGDQQSGDVANVGIDLFFDMLFDSLSKVDQFCLVPVLYKDV 681
Query: 491 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 550
Q+DINI+PRLPSEYI++LENP+E++NEA KAAE+D+W L+QFTE LRR+YGKEP ME+L
Sbjct: 682 QLDINISPRLPSEYISYLENPVELLNEAAKAAEKDLWALIQFTEDLRRRYGKEPRDMELL 741
Query: 551 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 610
LKKLYVRRMAAD+GI++IY SGK + MKTNMNKKVF++M ++MTSE HRNSL+F G +IK
Sbjct: 742 LKKLYVRRMAADLGISRIYPSGKTIFMKTNMNKKVFRLMTEAMTSETHRNSLSFAGKEIK 801
Query: 611 AELLLELPREQLLNWIFQCLAELYASLPALIKY 643
AELL+ LP LLNW+F CL++ Y +PAL+KY
Sbjct: 802 AELLVSLPDTLLLNWLFHCLSDCYTVIPALVKY 834
>gi|357156590|ref|XP_003577509.1| PREDICTED: transcription-repair-coupling factor-like [Brachypodium
distachyon]
Length = 826
Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/633 (68%), Positives = 536/633 (84%), Gaps = 1/633 (0%)
Query: 11 CGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 70
+++ Y+ P+E KRPR+LSKL+D + WE+R+ KGK+A+QKMVV+LMELYL R++Q+R
Sbjct: 195 AARMLYRYNL-PHEKKRPRSLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQRR 253
Query: 71 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130
PY + AI +FAA+FPYEPTPDQ +AF+DVE+DLTERETPMDRLICGDVGFGKTEVA+R
Sbjct: 254 SPYTRPEAIDQFAAEFPYEPTPDQNQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAMR 313
Query: 131 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190
AIF VVSAG QAMVLAPT++LA QH+DV+S+RFS YPDIK+ + S QSK EK+E + I
Sbjct: 314 AIFIVVSAGYQAMVLAPTVILANQHYDVMSDRFSSYPDIKIAIFSGAQSKEEKDELITQI 373
Query: 191 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 250
K GHL IIVGTH+LL R+ YNNLGLLVVDEEQ+FGV+QKEKIAS+K S+DVLTLSATPI
Sbjct: 374 KSGHLQIIVGTHALLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKSSIDVLTLSATPI 433
Query: 251 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 310
PRTLYLALTGFRDASL+STPPPER+ +KT++SAFS+E+ +SAIK EL RGGQVFYV+PRI
Sbjct: 434 PRTLYLALTGFRDASLMSTPPPERVAVKTYVSAFSRERALSAIKLELKRGGQVFYVVPRI 493
Query: 311 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370
K +++ + FL+ + P V +A+AHG++ S+ ++ MEKF+ G IKIL+CT+I+ESG+DI N
Sbjct: 494 KAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFSCGEIKILVCTHIIESGIDIPN 553
Query: 371 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 430
ANT+IVQ + FGLAQLYQLRGRVGR+ +E YLFY DKSLLS A++RL A+EE +L
Sbjct: 554 ANTMIVQYAELFGLAQLYQLRGRVGRSGREGFTYLFYTDKSLLSRIAMDRLGAIEEHSDL 613
Query: 431 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 490
GQGF +AEKDMGIRGFG++FGEQQ+GDV NVG+DLFF+MLF+SLSKVD+ C+ VPYK V
Sbjct: 614 GQGFHVAEKDMGIRGFGSMFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCINPVPYKDV 673
Query: 491 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 550
Q+DINI+ L SEYI++LENP+E++NEA KAAE+DIW L QFTE LRRQYGKEP ME+L
Sbjct: 674 QLDINISAHLSSEYISYLENPVELLNEAAKAAEKDIWTLTQFTEDLRRQYGKEPRDMELL 733
Query: 551 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 610
LKKLYVRRMAAD+GI +IY SGK + MKTNMNKKVF++M+++M SE HRNSLT G +IK
Sbjct: 734 LKKLYVRRMAADLGICRIYPSGKTIIMKTNMNKKVFRLMVEAMASETHRNSLTLTGKEIK 793
Query: 611 AELLLELPREQLLNWIFQCLAELYASLPALIKY 643
AELL+ LP LLNW+F CLA+ YA +PAL+KY
Sbjct: 794 AELLVTLPDTLLLNWLFHCLADCYAGMPALVKY 826
>gi|414591491|tpg|DAA42062.1| TPA: hypothetical protein ZEAMMB73_244087 [Zea mays]
Length = 825
Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/633 (67%), Positives = 541/633 (85%), Gaps = 1/633 (0%)
Query: 11 CGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 70
+++ Y+ P+E +RPR LSKL+D + WE+R+ KGK+A+QKMVV+LMELYL R++ R
Sbjct: 194 AARMLYRYNL-PHEKRRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRLGR 252
Query: 71 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130
PYPK ++ +FAA+FPYEPTPDQ +AF+DVE+DLTERETPMDRLICGDVGFGKTEVA+R
Sbjct: 253 SPYPKPASMDDFAAEFPYEPTPDQCQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAMR 312
Query: 131 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190
AIF VVSAG QAMVLAPTI+LAKQH+DV++ERF+ YP++KV + S QSK EK+E + MI
Sbjct: 313 AIFIVVSAGFQAMVLAPTIILAKQHYDVMTERFANYPEMKVAIFSGAQSKEEKDELITMI 372
Query: 191 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 250
K+G L+IIVGTH+LL R+VY+NLGLLVVDEEQ+FGV+QKEKIAS+K S+DVLTLSATPI
Sbjct: 373 KNGDLHIIVGTHALLTERMVYSNLGLLVVDEEQKFGVQQKEKIASYKSSIDVLTLSATPI 432
Query: 251 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 310
PRTLYLALTGFRDASL+STPPPER+ +KT++SAFSKE+ +SAIK+EL RGGQVFYV+PRI
Sbjct: 433 PRTLYLALTGFRDASLMSTPPPERVAVKTYVSAFSKERALSAIKFELQRGGQVFYVVPRI 492
Query: 311 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370
K +++ + FL+ + P V IA+AHG++ S+ ++ ME F G +KIL+CT+I+ESG+DI +
Sbjct: 493 KAIDDVLQFLKDSLPDVPIAVAHGKKLSKNIQLAMEDFTSGKVKILVCTHIIESGIDIAH 552
Query: 371 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 430
ANT+I+Q + +GLAQLYQLRGRVGR+ E AYLFY DKSLLS A +RL A+EE EL
Sbjct: 553 ANTMIIQFAELYGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSRVATDRLGAIEEHSEL 612
Query: 431 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 490
GQGF +AEKDMGIRGFG++FGEQQ+GDV NVG+DLFF+MLF+SLSKVD+ C++ VPYK V
Sbjct: 613 GQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCLVPVPYKDV 672
Query: 491 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 550
Q+DINI+PRL SEYI++LENP+E++NEA KAAE+D+W L+QFTE LRR+YGKEP ME+L
Sbjct: 673 QLDINISPRLSSEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRRYGKEPRDMELL 732
Query: 551 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 610
LKKLYVRRMAAD+GI++IY SGKM+ MKTNMNKKVF++M ++MTSE HRNSL+F +IK
Sbjct: 733 LKKLYVRRMAADLGISRIYPSGKMIFMKTNMNKKVFRLMTEAMTSETHRNSLSFAEKEIK 792
Query: 611 AELLLELPREQLLNWIFQCLAELYASLPALIKY 643
AELL+ LP LLNW+F CL++ Y +PAL+KY
Sbjct: 793 AELLVNLPDTLLLNWLFHCLSDCYTVIPALVKY 825
>gi|326489969|dbj|BAJ94058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 826
Score = 920 bits (2379), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/633 (68%), Positives = 535/633 (84%), Gaps = 1/633 (0%)
Query: 11 CGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 70
+++ Y+ P+E KRPR LSKL+D +AWE+R+ KGK+A+QKMVV+LMELYL R++Q+R
Sbjct: 195 AARMLYRYNL-PHEKKRPRNLSKLNDPSAWEKRRLKGKLAVQKMVVNLMELYLQRMRQRR 253
Query: 71 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130
PPY K A+ +FA++FPYEPTPDQ +AF+D+E DLTERETPMDRLICGDVGFGKTEVA+R
Sbjct: 254 PPYRKPEAMDQFASEFPYEPTPDQNQAFIDIENDLTERETPMDRLICGDVGFGKTEVAMR 313
Query: 131 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190
AIF VVS G QAMVLAPT++LA QHFDV+SERFS YPDIKV + S QSK EK+E + I
Sbjct: 314 AIFIVVSTGYQAMVLAPTVILANQHFDVMSERFSNYPDIKVAIFSGAQSKDEKDELITKI 373
Query: 191 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 250
+GHL IIVGTH+LL R+ YNNLGLLVVDEEQ+FGV+QKEKIAS K S+DVLTLSATPI
Sbjct: 374 TNGHLQIIVGTHALLTERMAYNNLGLLVVDEEQKFGVQQKEKIASLKASIDVLTLSATPI 433
Query: 251 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 310
PRTLYLALTGFRDASL+STPPPER+ +KT++SAFS+E +SAIK EL RGGQVFYV+PRI
Sbjct: 434 PRTLYLALTGFRDASLMSTPPPERVAVKTYVSAFSRESALSAIKLELKRGGQVFYVVPRI 493
Query: 311 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370
K +++ + FL+ + P V +AIAHG++ S+ ++ MEKF+ G IKIL+CT+I+ESG+DI N
Sbjct: 494 KAIDDVLQFLKDSLPDVPMAIAHGKKVSKNIQLAMEKFSCGEIKILVCTHIIESGIDIPN 553
Query: 371 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 430
ANT+IVQ + FGLAQLYQLRGRVGR+ +E +LFY DKSLLS A++RL A+EE +L
Sbjct: 554 ANTMIVQYAELFGLAQLYQLRGRVGRSGREGFTHLFYTDKSLLSRIAMDRLGAIEEHSDL 613
Query: 431 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 490
GQGF +AEKDMGIRGFG++FGEQQ+GDV NVGVDLFF+MLF+SLSKVD+ + +PYK V
Sbjct: 614 GQGFHVAEKDMGIRGFGSMFGEQQSGDVANVGVDLFFDMLFDSLSKVDQFRLKPIPYKDV 673
Query: 491 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 550
Q+DINI+P L SEYI++LENP+E++NEA KAAEQDIW LMQFTE LRRQYGKEP ME+L
Sbjct: 674 QLDINISPHLSSEYISYLENPVELLNEAAKAAEQDIWNLMQFTEGLRRQYGKEPRDMELL 733
Query: 551 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 610
LKKLYVRRMAAD+GI++IY SGKM+ MKTNMN+KV+++M ++M E HRNSL+F G +IK
Sbjct: 734 LKKLYVRRMAADLGISRIYPSGKMIIMKTNMNRKVYRLMEETMACETHRNSLSFTGKEIK 793
Query: 611 AELLLELPREQLLNWIFQCLAELYASLPALIKY 643
AELL+ LP LLNW+F CLA+ YA +PAL++Y
Sbjct: 794 AELLVNLPDTLLLNWLFHCLADCYAIMPALVRY 826
>gi|108864445|gb|ABG22504.1| CarD-like transcriptional regulator family protein, expressed
[Oryza sativa Japonica Group]
gi|215767702|dbj|BAG99930.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 590
Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/590 (68%), Positives = 509/590 (86%)
Query: 54 MVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMD 113
MVV+LMELYL R++QKRPPYPK + +F A+FPYEPTPDQ +AF+DV++DLTERETPMD
Sbjct: 1 MVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMD 60
Query: 114 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGL 173
RLICGDVGFGKTEVA+RAIF V+SAG QAMVLAPT++LAKQH+DV+SERFS YPDIKV +
Sbjct: 61 RLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAM 120
Query: 174 LSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKI 233
S Q+K EK+E + I++G L+IIVGTH++L R+ YNNLGLLVVDEEQ+FGV+QKEKI
Sbjct: 121 FSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKI 180
Query: 234 ASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAI 293
AS+K S+DVLTLSATPIPRTLYLALTGFRDASL+STPPPER+ ++T++S FSKE+ +SAI
Sbjct: 181 ASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAI 240
Query: 294 KYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAI 353
K+EL RGGQVFYV+PRIK +++ + FL+ + P V +A+AHG++ S+ ++ MEKFA G +
Sbjct: 241 KFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEV 300
Query: 354 KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLL 413
KIL+CT+I+ESG+DI NANT++VQ + FGLAQLYQLRGRVGR+ E AYLFY DKSLL
Sbjct: 301 KILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLL 360
Query: 414 SDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFES 473
S A +RL A+EE +LGQGF +AEKDMGIRGFG++FGEQQ+GDV NVG+DLFF+MLF+S
Sbjct: 361 SKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFFDMLFDS 420
Query: 474 LSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFT 533
LSKVD+ C+I VPYK VQ+DINI+ RL SEYI++LENP+E++NEA KAAE+D+W L+QFT
Sbjct: 421 LSKVDQFCLIPVPYKDVQLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLWTLIQFT 480
Query: 534 ESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSM 593
E LRRQYGKEP ME+LLKKLYVRRMAAD+GI++IY+SGKM+ MKTNMNKKVF++M ++M
Sbjct: 481 EDLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFRLMREAM 540
Query: 594 TSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 643
+ E HRNSL+F G +IK ELL+ LP LLNW+F CLA+ YA +PAL+KY
Sbjct: 541 SLETHRNSLSFTGKEIKGELLVNLPDTLLLNWLFHCLADCYAVIPALVKY 590
>gi|108864447|gb|ABA94063.2| CarD-like transcriptional regulator family protein, expressed
[Oryza sativa Japonica Group]
Length = 803
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/633 (64%), Positives = 520/633 (82%), Gaps = 30/633 (4%)
Query: 11 CGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 70
+++ Y+ P+E +RPR LSKL+D + WE+R+ KGK+A+QKMVV+LMELYL R++QKR
Sbjct: 201 AARMLYRYNL-PHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKR 259
Query: 71 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130
PPYPK + +F A+FPYEPTPDQ +AF+DV++DLTERETPMDRLICGDVGFGKTEVA+R
Sbjct: 260 PPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMR 319
Query: 131 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190
AIF V+SAG QAMVLAPT++LAKQH+DV+SERFS YPDIKV + S Q+K EK+E + I
Sbjct: 320 AIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKI 379
Query: 191 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 250
++G L+IIVGTH++L R+ YNNLGLLVVDEEQ+FGV+QKEKIAS+K S+DVLTLSATPI
Sbjct: 380 RNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPI 439
Query: 251 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 310
PRTLYLALTGFRDASL+STPPPER+ ++T++S FSKE+ +SAIK+EL RGGQVFYV+PRI
Sbjct: 440 PRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRI 499
Query: 311 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370
K +++ + FL+ + P V +A+AHG++ S+ ++ MEKFA G +KIL+CT+I+ESG+DI N
Sbjct: 500 KAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPN 559
Query: 371 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 430
ANT++VQ + FGLAQLYQ +RL A+EE +L
Sbjct: 560 ANTMVVQYAELFGLAQLYQ-----------------------------DRLGAIEEHSDL 590
Query: 431 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 490
GQGF +AEKDMGIRGFG++FGEQQ+GDV NVG+DLFF+MLF+SLSKVD+ C+I VPYK V
Sbjct: 591 GQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCLIPVPYKDV 650
Query: 491 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 550
Q+DINI+ RL SEYI++LENP+E++NEA KAAE+D+W L+QFTE LRRQYGKEP ME+L
Sbjct: 651 QLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRQYGKEPRDMELL 710
Query: 551 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 610
LKKLYVRRMAAD+GI++IY+SGKM+ MKTNMNKKVF++M ++M+ E HRNSL+F G +IK
Sbjct: 711 LKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFRLMREAMSLETHRNSLSFTGKEIK 770
Query: 611 AELLLELPREQLLNWIFQCLAELYASLPALIKY 643
ELL+ LP LLNW+F CLA+ YA +PAL+KY
Sbjct: 771 GELLVNLPDTLLLNWLFHCLADCYAVIPALVKY 803
>gi|87241294|gb|ABD33152.1| Helicase, C-terminal; Haem peroxidase, plant/fungal/bacterial
[Medicago truncatula]
Length = 494
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/457 (87%), Positives = 439/457 (96%)
Query: 22 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE 81
PNE K+PR LSKL+DT+AWE+RKTKGKVAIQKMVVDLMELYLHRLKQ+RPPYP +P +AE
Sbjct: 35 PNENKKPRALSKLNDTSAWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPMSPVVAE 94
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
FAA+FPYEPTPDQK+AF+DVE+DLTERETPMDRLICGDVGFGKTEVA+RAI CVV+A KQ
Sbjct: 95 FAAKFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAMRAIHCVVAAKKQ 154
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
AMVLAPTIVLAKQHFDV+SERFS YPDIKVGLLSRFQ+++EKE +L+MIK+G L+IIVGT
Sbjct: 155 AMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTRSEKEAYLEMIKNGDLDIIVGT 214
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
HSLLG+RVVYNNLGLLVVDEEQRFGVKQKE+IASFK SVDVLTLSATPIPRTLYLALTGF
Sbjct: 215 HSLLGNRVVYNNLGLLVVDEEQRFGVKQKERIASFKTSVDVLTLSATPIPRTLYLALTGF 274
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RDASLISTPPPER+PIKT LS+FSK+KVISAIKYELDR GQVFYVLPRIKGLEE M+FL+
Sbjct: 275 RDASLISTPPPERVPIKTQLSSFSKDKVISAIKYELDRSGQVFYVLPRIKGLEEAMEFLE 334
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+AFP V+IA+AHG+Q+S+QLE+TMEKF G IKILI TNIVESGLDIQNANTII+QDVQQ
Sbjct: 335 EAFPDVEIAVAHGKQFSKQLEDTMEKFTLGEIKILISTNIVESGLDIQNANTIIIQDVQQ 394
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
FGLAQLYQLRGRVGRADKEA+AYLFYPDKSLL+DQALERLAALEECRELGQGFQLAE+DM
Sbjct: 395 FGLAQLYQLRGRVGRADKEAYAYLFYPDKSLLTDQALERLAALEECRELGQGFQLAERDM 454
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD 478
GIRGFGTIFGEQQTGDVGNVG+DLFFEMLFESLSKV+
Sbjct: 455 GIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVN 491
>gi|357508485|ref|XP_003624531.1| Transcription-repair-coupling factor [Medicago truncatula]
gi|355499546|gb|AES80749.1| Transcription-repair-coupling factor [Medicago truncatula]
Length = 503
Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/459 (86%), Positives = 439/459 (95%)
Query: 22 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE 81
PNE K+PR LSKL+DT+AWE+RKTKGKVAIQKMVVDLMELYLHRLKQ+RPPYP +P +AE
Sbjct: 19 PNENKKPRALSKLNDTSAWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPMSPVVAE 78
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
FAA+FPYEPTPDQK+AF+DVE+DLTERETPMDRLICGDVGFGKTEVA+RAI CVV+A KQ
Sbjct: 79 FAAKFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAMRAIHCVVAAKKQ 138
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
AMVLAPTIVLAKQHFDV+SERFS YPDIKVGLLSRFQ+++EKE +L+MIK+G L+IIVGT
Sbjct: 139 AMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTRSEKEAYLEMIKNGDLDIIVGT 198
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
HSLLG+RVVYNNLGLLVVDEEQRFGVKQKE+IASFK SVDVLTLSATPIPRTLYLALTGF
Sbjct: 199 HSLLGNRVVYNNLGLLVVDEEQRFGVKQKERIASFKTSVDVLTLSATPIPRTLYLALTGF 258
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RDASLISTPPPER+PIKT LS+FSK+KVISAIKYELDR GQVFYVLPRIKGLEE M+FL+
Sbjct: 259 RDASLISTPPPERVPIKTQLSSFSKDKVISAIKYELDRSGQVFYVLPRIKGLEEAMEFLE 318
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+AFP V+IA+AHG+Q+S+QLE+TMEKF G IKILI TNIVESGLDIQNANTII+QDVQQ
Sbjct: 319 EAFPDVEIAVAHGKQFSKQLEDTMEKFTLGEIKILISTNIVESGLDIQNANTIIIQDVQQ 378
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
FGLAQLYQLRGRVGRADKEA+AYLFYPDKSLL+DQALERLAALEECRELGQGFQLAE+DM
Sbjct: 379 FGLAQLYQLRGRVGRADKEAYAYLFYPDKSLLTDQALERLAALEECRELGQGFQLAERDM 438
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEH 480
GIRGFGTIFGEQQTGDVGNVG+DLFFEMLFESLSK +H
Sbjct: 439 GIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKSPKH 477
>gi|168021077|ref|XP_001763068.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685551|gb|EDQ71945.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 792
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/625 (59%), Positives = 479/625 (76%), Gaps = 2/625 (0%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F P + R LSKL+D WE+R +KGK+AIQK+VV++MELY+HRLKQ RP YPKN +
Sbjct: 168 FSPGDVGRAPVLSKLNDPGNWEKRVSKGKLAIQKLVVNMMELYIHRLKQTRPVYPKNSKL 227
Query: 80 AE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ FAA+FPY+ T DQ +A DVERD+TERETPMDRLICGDVGFGKTEVALRA+F SA
Sbjct: 228 MDSFAAKFPYKETSDQVQAIADVERDMTERETPMDRLICGDVGFGKTEVALRALFLAASA 287
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G+QAM+LAPT VLAKQH+DV+ +RF+ Y D+KV LLSRFQ EK+E + I G L+I+
Sbjct: 288 GRQAMLLAPTTVLAKQHYDVIRQRFAGY-DMKVALLSRFQKDGEKKEVIAGISDGSLSIV 346
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTHSLLG++V Y+NLGLLVVDEEQRFGV+QKE+I S K SVDVLTLSATPIPRTLYLAL
Sbjct: 347 VGTHSLLGNQVRYHNLGLLVVDEEQRFGVRQKERITSMKTSVDVLTLSATPIPRTLYLAL 406
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+GFRDASLI+TPP ER PI THL F+ E V AI +EL RGGQVFYV+PR+KG+EE
Sbjct: 407 SGFRDASLITTPPAERRPITTHLMEFNPEAVKKAIDFELKRGGQVFYVVPRVKGMEESKA 466
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L+ FP V I +AHGQQ + LEE+ME+F++G IL+CT+IVESGLDI+ NTII++D
Sbjct: 467 ILESYFPDVGIGVAHGQQSATVLEESMEQFSEGTYLILLCTSIVESGLDIRRVNTIIIED 526
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
VQ FGLAQLYQLRGRVGR+D+EAHAY+F+P K LSD ALERL ALE+C LGQGFQLAE
Sbjct: 527 VQLFGLAQLYQLRGRVGRSDREAHAYMFHPSKENLSDDALERLVALEDCCGLGQGFQLAE 586
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G++FGE+Q+GDV +GVDL+ EMLFE LS VD + V ++ VQ+D+ ++
Sbjct: 587 RDMAIRGIGSVFGEKQSGDVAKIGVDLYLEMLFEGLSNVDLQKLPEVTFEEVQLDLAVST 646
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P +Y+ +++ +AEKAA + LMQFT LR +YG EP ++E+LLK LYV+R
Sbjct: 647 HIPGDYVTSAALRDKVLRDAEKAANNGMNALMQFTNRLRNEYGPEPPTVEMLLKTLYVKR 706
Query: 559 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELP 618
+AAD+GI +I GK V M T M + ++M+ ++T+ ++SLT+E +I+ + L+ LP
Sbjct: 707 LAADLGIHRIRTRGKTVVMDTKMEPEAYEMLSSAITTASVQDSLTYESGRIEMKGLIGLP 766
Query: 619 REQLLNWIFQCLAELYASLPALIKY 643
E+ L +F CLAE+ LP+ +KY
Sbjct: 767 VERQLERVFVCLAEMRNGLPSFVKY 791
>gi|302763495|ref|XP_002965169.1| hypothetical protein SELMODRAFT_83786 [Selaginella moellendorffii]
gi|300167402|gb|EFJ34007.1| hypothetical protein SELMODRAFT_83786 [Selaginella moellendorffii]
Length = 693
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/632 (56%), Positives = 467/632 (73%), Gaps = 15/632 (2%)
Query: 20 FRPNET-KRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-P 77
FRP E+ KR LSKL+D + WE+R+T+G + Q+ VV ++++Y+ RLKQKRP Y K+ P
Sbjct: 68 FRPGESVKRYPALSKLNDRSQWEKRRTEGSLDAQRRVVKMIDVYIRRLKQKRPVYSKDVP 127
Query: 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 137
A+++FA +FPY PTPDQ KAFLDVERDLT+ ETPMDRLICGDVGFGKTEVA+RAIF VS
Sbjct: 128 AMSKFAGKFPYTPTPDQIKAFLDVERDLTDAETPMDRLICGDVGFGKTEVAMRAIFYAVS 187
Query: 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 197
A KQ MVLAPT VLAKQH + + ERF+ +PDIKV LLSRFQ+ ++ + I G +NI
Sbjct: 188 AKKQVMVLAPTTVLAKQHHESIKERFANFPDIKVALLSRFQNNVDRRAVIAGINDGVVNI 247
Query: 198 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 257
VGTHSLLG+ + Y N+GLLVVDEEQRFGV QKEKI++ K +VD+LTLSATPIPRTL++A
Sbjct: 248 AVGTHSLLGNNIQYENVGLLVVDEEQRFGVAQKEKISTLKTTVDILTLSATPIPRTLHMA 307
Query: 258 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG-LEEP 316
L+GFRDASL++TPPPER PIKTH+ +S++ V AIK ELDR GQVFYV+PRI+G +E
Sbjct: 308 LSGFRDASLMTTPPPERRPIKTHVCVYSQDMVKDAIKAELDRRGQVFYVVPRIQGNMEST 367
Query: 317 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 376
L+ PGV ++IAHG++ + +LE TM KF + IL+CTNI+ESGLDI NTIIV
Sbjct: 368 EKKLKLLVPGVQVSIAHGKKCATELEATMTKFTEKGTSILLCTNIIESGLDIPTVNTIIV 427
Query: 377 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 436
++VQ FGLAQ+YQLRGRVGRADK AHAY+ +P K LS ALERL+ALE+C LGQGFQL
Sbjct: 428 ENVQMFGLAQIYQLRGRVGRADKVAHAYMLHPPKDFLSSDALERLSALEDCCALGQGFQL 487
Query: 437 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDE---HCVISVPYKSVQID 493
AE+DM IRG G+IFGE+Q+G+ VGVDL+ EMLFE++SKV+ H + + Y+ VQ+
Sbjct: 488 AERDMAIRGIGSIFGEKQSGEFSKVGVDLYAEMLFEAISKVNSAQYHSLPQLEYEDVQVK 547
Query: 494 ININPRLPSEYINHLENPM--EMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
++ +I+ L + + + AE+AA++ I L++FTE LR + GKEP +E LL
Sbjct: 548 RHM-------WISILSSMQWEAVTDSAEEAAKKGIKDLVRFTEKLRSERGKEPPPLEALL 600
Query: 552 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 611
K +Y +RMAAD+GI I GK + M TNMN F+++ SM S ++SL+F +++
Sbjct: 601 KTIYAKRMAADLGIHHIQTRGKQITMLTNMNADAFQVLHCSMASPPLKSSLSFSNGRLEL 660
Query: 612 ELLLELPREQLLNWIFQCLAELYASLPALIKY 643
L+ELP E L +FQCLAEL L + + Y
Sbjct: 661 HSLVELPSEFQLERLFQCLAELRRGLASFLTY 692
>gi|302757661|ref|XP_002962254.1| hypothetical protein SELMODRAFT_77276 [Selaginella moellendorffii]
gi|300170913|gb|EFJ37514.1| hypothetical protein SELMODRAFT_77276 [Selaginella moellendorffii]
Length = 704
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/630 (56%), Positives = 465/630 (73%), Gaps = 15/630 (2%)
Query: 22 PNET-KRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAI 79
P E+ KR LSKL+D + WE+R+T+G + Q+ VV ++++Y+ RLKQKRP Y K+ PA+
Sbjct: 81 PGESVKRYPALSKLNDRSQWEKRRTEGSLDAQRRVVKMIDVYIRRLKQKRPVYSKDVPAM 140
Query: 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 139
++FA +FPY PTPDQ KAFLDVERDLT+ ETPMDRLICGDVGFGKTEVA+RAIF VSA
Sbjct: 141 SKFAGKFPYTPTPDQIKAFLDVERDLTDAETPMDRLICGDVGFGKTEVAMRAIFYAVSAK 200
Query: 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 199
KQ MVLAPT VLAKQH + + ERF+ +PDIKV LLSRFQ+ ++ + I G +NI V
Sbjct: 201 KQVMVLAPTTVLAKQHHESIKERFANFPDIKVALLSRFQNNVDRRAVIAGINDGVVNIAV 260
Query: 200 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 259
GTHSLLG+ + Y +GLLVVDEEQRFGV QKEKI++ K +VD+LTLSATPIPRTL++AL+
Sbjct: 261 GTHSLLGNNIQYEKVGLLVVDEEQRFGVAQKEKISTLKTTVDILTLSATPIPRTLHMALS 320
Query: 260 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG-LEEPMD 318
GFRDASL++TPPPER PIKTH+ +S++ V AIK ELDR GQVFYV+PRI+G +E
Sbjct: 321 GFRDASLMTTPPPERRPIKTHVCVYSQDMVKDAIKAELDRQGQVFYVVPRIQGNMESTEK 380
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L+ PGV ++IAHG++ + +LE TM KF + IL+CTNI+ESGLDI NTIIV++
Sbjct: 381 KLKLLVPGVQVSIAHGKKCATELEATMTKFTEKGTSILLCTNIIESGLDIPTVNTIIVEN 440
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
VQ FGLAQ+YQLRGRVGRADK AHAY+ +P K LS ALERL+ALE+C LGQGFQLAE
Sbjct: 441 VQMFGLAQIYQLRGRVGRADKVAHAYMLHPPKDFLSSDALERLSALEDCCALGQGFQLAE 500
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDE---HCVISVPYKSVQIDIN 495
+DM IRG G+IFGE+Q+G+ VGVDL+ EMLFE++SKV+ H + + Y+ VQ+ +
Sbjct: 501 RDMAIRGIGSIFGEKQSGEFSKVGVDLYAEMLFEAISKVNSAQYHSLPQLEYEDVQVKRH 560
Query: 496 INPRLPSEYINHLENPM--EMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553
+ +I+ L + + + AE+AA++ I L++FTE+LR + GKEP +E LLK
Sbjct: 561 M-------WISILSSMQWEAVTDSAEEAAKKGIKDLVRFTENLRSERGKEPPPLEALLKT 613
Query: 554 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL 613
+Y +RMAAD+GI I GK + M TNMN F+++ SM S ++SL+F +++
Sbjct: 614 IYAKRMAADLGIHHIQTRGKQITMLTNMNADAFQVLHCSMASPPLKSSLSFSNGRLELHS 673
Query: 614 LLELPREQLLNWIFQCLAELYASLPALIKY 643
L+ELP E L +FQCLAEL L + + Y
Sbjct: 674 LVELPSEFQLERLFQCLAELRRGLASFLTY 703
>gi|414591492|tpg|DAA42063.1| TPA: hypothetical protein ZEAMMB73_244087 [Zea mays]
Length = 692
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/486 (66%), Positives = 414/486 (85%), Gaps = 1/486 (0%)
Query: 11 CGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 70
+++ Y+ P+E +RPR LSKL+D + WE+R+ KGK+A+QKMVV+LMELYL R++ R
Sbjct: 194 AARMLYRYNL-PHEKRRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRLGR 252
Query: 71 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130
PYPK ++ +FAA+FPYEPTPDQ +AF+DVE+DLTERETPMDRLICGDVGFGKTEVA+R
Sbjct: 253 SPYPKPASMDDFAAEFPYEPTPDQCQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAMR 312
Query: 131 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190
AIF VVSAG QAMVLAPTI+LAKQH+DV++ERF+ YP++KV + S QSK EK+E + MI
Sbjct: 313 AIFIVVSAGFQAMVLAPTIILAKQHYDVMTERFANYPEMKVAIFSGAQSKEEKDELITMI 372
Query: 191 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 250
K+G L+IIVGTH+LL R+VY+NLGLLVVDEEQ+FGV+QKEKIAS+K S+DVLTLSATPI
Sbjct: 373 KNGDLHIIVGTHALLTERMVYSNLGLLVVDEEQKFGVQQKEKIASYKSSIDVLTLSATPI 432
Query: 251 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 310
PRTLYLALTGFRDASL+STPPPER+ +KT++SAFSKE+ +SAIK+EL RGGQVFYV+PRI
Sbjct: 433 PRTLYLALTGFRDASLMSTPPPERVAVKTYVSAFSKERALSAIKFELQRGGQVFYVVPRI 492
Query: 311 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370
K +++ + FL+ + P V IA+AHG++ S+ ++ ME F G +KIL+CT+I+ESG+DI +
Sbjct: 493 KAIDDVLQFLKDSLPDVPIAVAHGKKLSKNIQLAMEDFTSGKVKILVCTHIIESGIDIAH 552
Query: 371 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 430
ANT+I+Q + +GLAQLYQLRGRVGR+ E AYLFY DKSLLS A +RL A+EE EL
Sbjct: 553 ANTMIIQFAELYGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSRVATDRLGAIEEHSEL 612
Query: 431 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 490
GQGF +AEKDMGIRGFG++FGEQQ+GDV NVG+DLFF+MLF+SLSKVD+ C++ VPYK V
Sbjct: 613 GQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCLVPVPYKDV 672
Query: 491 QIDINI 496
Q+++ I
Sbjct: 673 QVNLKI 678
>gi|411116994|ref|ZP_11389481.1| transcription-repair coupling factor Mfd [Oscillatoriales
cyanobacterium JSC-12]
gi|410713097|gb|EKQ70598.1| transcription-repair coupling factor Mfd [Oscillatoriales
cyanobacterium JSC-12]
Length = 1175
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 291/618 (47%), Positives = 413/618 (66%), Gaps = 16/618 (2%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQF 86
P L+K+S AWE+ K+K + AI+K+ VDL++LY R +Q +P++ P E F
Sbjct: 565 PPELNKMSGK-AWEKTKSKVRKAIKKVAVDLLQLYAQRAQQIGFSFPEDAPWQQEMEDSF 623
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
PY+PTPDQ KA DV+ D+ + + PMDRLICGDVGFGKTEVA+RAIF V+AGKQ +LA
Sbjct: 624 PYQPTPDQLKATQDVKLDM-QSDRPMDRLICGDVGFGKTEVAIRAIFKAVTAGKQVALLA 682
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +L +QH+ + ERF+ YP I+VGLL+RF++ E++E L +K G L+++VGTH LLG
Sbjct: 683 PTTILTQQHYHTLKERFAPYP-IQVGLLNRFRTAPERKEILQRMKTGELDVVVGTHQLLG 741
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
V + +LGLLVVDEEQRFGV QKEKI S + VDVLTLSATPIPRTLY+AL+G R+ SL
Sbjct: 742 KGVEFRDLGLLVVDEEQRFGVNQKEKIKSLRTQVDVLTLSATPIPRTLYMALSGVREMSL 801
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPPP R PIKTHL+ + E V SAI+ ELDRGGQVFYV+PR++G+EE L++ PG
Sbjct: 802 ITTPPPSRRPIKTHLAPYDPEVVRSAIRQELDRGGQVFYVVPRVEGIEEVSARLREMVPG 861
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
V IAIAHGQ +LE TM F++G +IL+CT I+ESGLDI NTI+++D +FGL+Q
Sbjct: 862 VRIAIAHGQMPEGELESTMLTFSEGEAEILVCTTIIESGLDIPRVNTILIEDANRFGLSQ 921
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
LYQLRGRVGR+ +AHA+LFYP + L+D A +RL A++E +LG G+QLA +DM IRG
Sbjct: 922 LYQLRGRVGRSGIQAHAWLFYPKDAQLTDTARQRLRAIQEFAQLGSGYQLAMRDMEIRGV 981
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
G + G +Q+G + VG DL+ EML E++S++ + V QID+N+ +P++YI
Sbjct: 982 GNLLGAEQSGQMEAVGFDLYVEMLEEAISEIRGQEIPKV--DDTQIDLNLTAFIPADYIP 1039
Query: 507 HLENPME---MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADI 563
L+ M + A AE L Q L +YG P + + LL+ + ++++ +
Sbjct: 1040 DLDQKMSAYRAIATANSKAE-----LTQIAADLSDRYGPIPAATQQLLRIVELKQIGKKL 1094
Query: 564 GITKIYASG-KMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQL 622
G ++I G + V ++T M + + ++ ++ +H + F ++ L L +Q
Sbjct: 1095 GFSRIKPDGTQHVALETPMEEPAWNLLKANLPEHLH-SRFVFTPGKVTVRGLGVLSADQQ 1153
Query: 623 LNWIFQCLAELYASLPAL 640
L+ + L ++ +LP L
Sbjct: 1154 LDNLINWLGKMQGALPEL 1171
>gi|22298495|ref|NP_681742.1| transcription-repair coupling factor [Thermosynechococcus elongatus
BP-1]
gi|22294675|dbj|BAC08504.1| transcription-repair coupling factor [Thermosynechococcus elongatus
BP-1]
Length = 1142
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 291/615 (47%), Positives = 413/615 (67%), Gaps = 15/615 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
+R E + P+ L+KL+ T WER K + + AI+K+ VDL++LY R +Q+ +P + P
Sbjct: 528 YRTQEDRAPQ-LNKLTGNT-WERTKARVRKAIKKVAVDLLQLYAQRAQQRGFAFPPDTPW 585
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ KA +V+ D+ E + PMDRL+CGDVGFGKTEVA+RAIF V A
Sbjct: 586 QREMEDSFPYQPTPDQLKAIQEVKADM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVMA 644
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ VLAPT +L +QH+ + ERF+ YP I+VGLL+RF+S+ E+++ L +K G ++++
Sbjct: 645 GKQVAVLAPTTILTQQHYHTLKERFAPYP-IQVGLLNRFRSERERQDLLQKLKIGEIDVV 703
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + V + +LGLLVVDEEQRFGV QKEKI + K VDVLTLSATPIPRTLY+AL
Sbjct: 704 VGTHQLLSNSVKFRDLGLLVVDEEQRFGVNQKEKIKALKTQVDVLTLSATPIPRTLYMAL 763
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PI+THL+ + E V SAI+ ELDRGGQVFYV+PR++G+E
Sbjct: 764 SGVREMSLITTPPPSRRPIQTHLAPYDPETVRSAIRQELDRGGQVFYVVPRVEGIEAVAA 823
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ G I IAHGQ +LE TM F+ G IL+CT I+ESGLDI NTI+V+D
Sbjct: 824 KLQGMVVGARILIAHGQMAEGELESTMLGFSNGEADILVCTTIIESGLDIPRVNTILVED 883
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q+FGLAQLYQLRGRVGRA +AHA+LFYP + +L+D A +RL A++E +LG G+QLA
Sbjct: 884 AQRFGLAQLYQLRGRVGRAGIQAHAWLFYPRQEVLTDAARQRLRAIQEFTQLGSGYQLAI 943
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G QQ G + +VG DL+ E+L E+++++ + +V QID+N+
Sbjct: 944 RDMEIRGVGNLLGAQQHGQLDSVGFDLYVELLEEAIAEIRGQEIPTV--DDTQIDLNVTA 1001
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++Y+ L M A ++ LMQ +YG P S++ LL+ + +++
Sbjct: 1002 FIPADYMPDLAQKMAAYRAVSAATTKE--DLMQLAAEWSDRYGALPKSVQQLLRVVELKQ 1059
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELL--- 614
+A GI++I GK V ++T+M + +K++++ + + + + +G +I L
Sbjct: 1060 LARQCGISRIRPEGKQHVILETSMAEPAWKLLLEQLPTHLQSRFVYSQG-KITVRGLGTQ 1118
Query: 615 -LELPREQLLNWIFQ 628
+E EQL++W Q
Sbjct: 1119 PVEKQLEQLIDWFSQ 1133
>gi|434399533|ref|YP_007133537.1| transcription-repair coupling factor [Stanieria cyanosphaera PCC
7437]
gi|428270630|gb|AFZ36571.1| transcription-repair coupling factor [Stanieria cyanosphaera PCC
7437]
Length = 1172
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 282/567 (49%), Positives = 387/567 (68%), Gaps = 10/567 (1%)
Query: 26 KRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAA 84
RP L+K++D W R K + + ++K+ VDL++LY R K YP NP E
Sbjct: 560 NRPPVLNKMADK-GWTRTKNQVRKTVKKLAVDLLKLYAKRAKLTGHAYPGDNPWQQELED 618
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAM 143
FPY+PTPDQ KA DV+ DL E + PMDRL+CGDVGFGKTEVA+RAIF VV++G KQ
Sbjct: 619 SFPYQPTPDQLKAIQDVKLDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKVVTSGHKQVA 677
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
LAPT +L +QH+ + ERF+ YP I +GLL+RF++ +EK+E + + G L+++VGTH
Sbjct: 678 FLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTNSEKKEIMQRLATGELDVVVGTHQ 736
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LL V + NLGLLV+DEEQRFGV QKEKI FK VDVLTLSATPIPRTLY++L+G R+
Sbjct: 737 LLSKEVSFKNLGLLVIDEEQRFGVNQKEKIKEFKTLVDVLTLSATPIPRTLYMSLSGIRE 796
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
SLI+TPPP R PIKTHLS ++ E V +AI+ ELDRGGQ+FYV+PR++G+EE +++
Sbjct: 797 MSLITTPPPSRRPIKTHLSPYNPEVVRTAIRNELDRGGQIFYVVPRVEGIEEVAAQIREM 856
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
PG+ IAIAHGQ +LE TM F+ G IL+CT I+ESGLDI NTIIV+D Q+FG
Sbjct: 857 IPGIRIAIAHGQMPESELESTMITFSNGEADILVCTTIIESGLDIPRVNTIIVEDSQKFG 916
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQLRGRVGRA +AHA+L YP+K LSD A +RL AL+E +LG G+QLA +DM I
Sbjct: 917 LSQLYQLRGRVGRAGIQAHAWLLYPNKQTLSDPARKRLRALQEFSQLGSGYQLATRDMEI 976
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSE 503
RG G++ G +Q+G + +G DL+ EML ES+ ++ + + QID+N+ +P++
Sbjct: 977 RGVGSLLGAEQSGQMTAIGFDLYMEMLQESIKEIQGQEIPQI--DDTQIDLNLTAFIPAD 1034
Query: 504 YINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADI 563
YI LE M AA L Q R +YG+ P + + L++ + ++++A I
Sbjct: 1035 YIPDLEQKMSAYRAV--AASSSKTELKQIEAEWRNRYGEIPPAAQQLIQVMELKQIAKAI 1092
Query: 564 GITKIYASGKM-VGMKTNMNKKVFKMM 589
G ++I A GK + ++T M + +K++
Sbjct: 1093 GFSRIKAEGKQNLVLETPMAEPAWKLL 1119
>gi|428309816|ref|YP_007120793.1| transcription-repair coupling factor Mfd [Microcoleus sp. PCC 7113]
gi|428251428|gb|AFZ17387.1| transcription-repair coupling factor Mfd [Microcoleus sp. PCC 7113]
Length = 1166
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 283/615 (46%), Positives = 405/615 (65%), Gaps = 10/615 (1%)
Query: 26 KRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAA 84
+RP L+K+S AWE+ K + + I+K+ VDL++LY R +++ YP +P E
Sbjct: 555 ERPPELNKMSGK-AWEKTKNRVRKGIKKLAVDLLQLYAQRSQRQGFSYPLDSPWQEELED 613
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
FPY+PTPDQ KA DV+RD+ + PMDRL+CGDVGFGKTEVA+RAIF V+AGKQ
Sbjct: 614 SFPYQPTPDQLKAVQDVKRDMMS-DRPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVAF 672
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
LAPT +L +QH+ + ERF+ YP I VGLL+RF++ E++E + G L+++VGTH L
Sbjct: 673 LAPTTILTQQHYHTIKERFAPYP-IHVGLLNRFRTAEERKEIQKRLATGELDVVVGTHQL 731
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264
LG V + +LGLLV+DEEQRFGV QKEKI S K VDVLTLSATPIPRTLY++L+G R+
Sbjct: 732 LGKGVTFRDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGVREM 791
Query: 265 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 324
SLI+TPPP R PIKTHLS + E + +AI+ ELDRGGQ+FYV+PRI+G+EE L++
Sbjct: 792 SLITTPPPSRRPIKTHLSPYDPEAMRTAIRTELDRGGQIFYVVPRIEGIEEVGTQLREMI 851
Query: 325 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 384
PG +AIAHGQ +LE TM F G +L+CT I+ESGLDI NTI+++D +FGL
Sbjct: 852 PGCRLAIAHGQMNDAELEATMLAFGNGEADVLVCTTIIESGLDIPRVNTILIEDAHKFGL 911
Query: 385 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIR 444
AQLYQLRGRVGRA +AHA+LFYP + +LS+QA +RL A++E +LG G+QLA +DM IR
Sbjct: 912 AQLYQLRGRVGRAGIQAHAWLFYPKQKVLSEQARQRLRAIQEFTQLGSGYQLATRDMEIR 971
Query: 445 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEY 504
G G + G +Q+G + +G DL+ EML E++ ++ + V QID+N+ +P++Y
Sbjct: 972 GVGNLLGVEQSGQMEAIGFDLYMEMLQEAIKEIQGQEIPKV--DDTQIDLNLTAFIPADY 1029
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
I L+ M A +D L+Q +YG P + LL+ + ++++A +G
Sbjct: 1030 IPDLDQKMSAYRAVASAESKD--ELVQIAADWSDRYGPIPTAANQLLRVVELKQIAKSLG 1087
Query: 565 ITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLL 623
++I GK V ++T M + + ++ + + + R+ L + ++ L L +Q L
Sbjct: 1088 FSRIKPEGKQHVILETPMEEPAWNLLKEKLPEHL-RSRLVYTPGKVTVRGLAVLKADQQL 1146
Query: 624 NWIFQCLAELYASLP 638
+ L+++ +LP
Sbjct: 1147 ENLINFLSKMQGALP 1161
>gi|428207986|ref|YP_007092339.1| transcription-repair coupling factor [Chroococcidiopsis thermalis PCC
7203]
gi|428009907|gb|AFY88470.1| transcription-repair coupling factor [Chroococcidiopsis thermalis PCC
7203]
Length = 1223
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 282/624 (45%), Positives = 405/624 (64%), Gaps = 11/624 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPA 78
FR ++K P L+K+S + AW K + + AI+K+ VDL++LY R +Q YP +P
Sbjct: 607 FRATDSKPPE-LNKMS-SKAWANTKNRARKAIKKLAVDLLQLYAQRSQQSGYAYPIDSPW 664
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PT DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RA+F V+A
Sbjct: 665 QVELEDSFPYQPTTDQLKATQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAVFKAVTA 723
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ LAPT +L +QH+ + ERF+ YP + VGLL+RF+S E+++ L + G L+I+
Sbjct: 724 GKQVAFLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRSAEERKDLLKRLATGELDIV 782
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V + +LGLL++DEEQRFGV QKEKI + K +DVLTLSATPIPRTLY++L
Sbjct: 783 VGTHQLLGKGVSFRDLGLLIIDEEQRFGVNQKEKIKALKTQLDVLTLSATPIPRTLYMSL 842
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL+ + E + SAI+ ELDRGGQVFYV+PR++G+EE
Sbjct: 843 SGIREMSLITTPPPSRRPIKTHLAPYDTESIRSAIRQELDRGGQVFYVVPRVEGIEETAA 902
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ G IA+ HGQ QLE TM F+ G IL+CT I+ESGLDI NTI+++D
Sbjct: 903 TLREIVGGARIAVGHGQLDENQLESTMLSFSNGEADILVCTTIIESGLDIPRVNTILIED 962
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG G+ LA
Sbjct: 963 AHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRALSDTARQRLRAIQEFTQLGSGYHLAM 1022
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E+L ++ + V + QID+N+
Sbjct: 1023 RDMEIRGVGNLLGVEQSGQMDAIGFDLYMEMLEEALREIRGQEIPQV--EDTQIDLNLTA 1080
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI L+ M A ++ L+Q +YG P LL+ + +++
Sbjct: 1081 FIPTDYITDLDQKMSAYRAVAAAKTKE--ELIQLAADWSDRYGAIPTGATQLLRVMELKQ 1138
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A +G ++I GK V ++T M + + +MI ++ + R+ + ++ L L
Sbjct: 1139 LARKLGFSRIKPEGKQHVVLETAMEEPAWNLMIANLPDSL-RSRFVYSPGKVTVRGLAVL 1197
Query: 618 PREQLLNWIFQCLAELYASLPALI 641
EQ L + L+++ ++P +
Sbjct: 1198 KTEQQLQTLIDALSKMQGAVPETV 1221
>gi|359459497|ref|ZP_09248060.1| transcription-repair coupling factor [Acaryochloris sp. CCMEE 5410]
Length = 1164
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 295/654 (45%), Positives = 424/654 (64%), Gaps = 30/654 (4%)
Query: 4 YLCNSCTCGSIMFCYD-------FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVV 56
YL G++ D FR RP+ L+K+S AWE+ K K + +I+K+ V
Sbjct: 520 YLVLQYADGTLRVAADQLGSLSRFRTTGEGRPQ-LNKMSGK-AWEKTKNKVRKSIKKLAV 577
Query: 57 DLMELYLHRLKQKRPPYP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRL 115
DL++LY R +Q+ +P P E FPY+PT DQ KA DV+RD+ E PMDRL
Sbjct: 578 DLLKLYAQRAQQEGFTFPLDQPWQEEMEDSFPYQPTADQLKAAQDVKRDM-ENPRPMDRL 636
Query: 116 ICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLS 175
+CGDVGFGKTEVA RA+F V+AGKQ LAPT +L +QH+ + ERF+ YP I++GLL+
Sbjct: 637 VCGDVGFGKTEVATRAVFKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYP-IQIGLLN 695
Query: 176 RFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIAS 235
RF+S E+++ + +K G L+I+VGTH LLG V + +LGLLV+DEEQRFGV QKEKI +
Sbjct: 696 RFRSAEERKDIQNRLKTGELDIVVGTHQLLGKSVNFRDLGLLVIDEEQRFGVNQKEKIKT 755
Query: 236 FKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKY 295
K VDVLTLSATPIPRTLY+AL+G R+ SLI+TPPP R PIKTHLS + E + SA++
Sbjct: 756 LKTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLSPYDPESIRSAVRQ 815
Query: 296 ELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKI 355
ELDRGGQ+FYV+PR++G+EE L++ P IAIAHGQ +LE TM F+ G +I
Sbjct: 816 ELDRGGQIFYVVPRVEGIEEVAGKLREMVPSARIAIAHGQMVEGELEATMLTFSNGDAEI 875
Query: 356 LICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSD 415
L+CT I+ESGLDI NTI+++D Q+FGL+QLYQLRGRVGRA +AHA+LFYP++S L++
Sbjct: 876 LVCTTIIESGLDIPRVNTILIEDAQKFGLSQLYQLRGRVGRAGIQAHAWLFYPNQSSLTE 935
Query: 416 QALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS 475
+A +RL AL+E +LG G+QLA +DM IRG G + G +Q+G + +G DL+ EML ES++
Sbjct: 936 KARKRLRALQEFSQLGSGYQLAVRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLDESIN 995
Query: 476 KVDEHCVISVPYKSVQIDININPRLPSEYINHLENPME---MVNEAEKAAEQDIWCLMQF 532
++ + V Q+D+N+ +P++YI L+ M V AE A+ L Q
Sbjct: 996 EIRGQEIPQV--DEAQVDLNLTAFIPADYITDLDQKMSAYRAVASAETKAD-----LTQT 1048
Query: 533 TESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMID 591
+YG P S + LL+ + ++++A +G ++I K V ++T M + FK++ +
Sbjct: 1049 AVDWNDRYGPIPDSAQQLLRIMELKQLAKSLGFSRIKPEDKQHVMLETPMEEPAFKLLKE 1108
Query: 592 SMTSEVHRNSLTFEGD-QIKAELLLELPR--EQLLNWIFQCLAELYASLPALIK 642
++ + + F G ++ +++ R E L++W L ++ +LP + K
Sbjct: 1109 NLPEHLRSRFVYFPGKVTVRGLGVMKADRQLESLIDW----LGKMKGALPEVEK 1158
>gi|158337270|ref|YP_001518445.1| transcription-repair coupling factor [Acaryochloris marina MBIC11017]
gi|158307511|gb|ABW29128.1| transcription-repair coupling factor [Acaryochloris marina MBIC11017]
Length = 1164
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 295/654 (45%), Positives = 424/654 (64%), Gaps = 30/654 (4%)
Query: 4 YLCNSCTCGSIMFCYD-------FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVV 56
YL G++ D FR RP+ L+K+S AWE+ K K + +I+K+ V
Sbjct: 520 YLVLQYADGTLRVAADQLGSLSRFRNTGEGRPQ-LNKMSGK-AWEKTKNKVRKSIKKLAV 577
Query: 57 DLMELYLHRLKQKRPPYP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRL 115
DL++LY R +Q+ +P P E FPY+PT DQ KA DV+RD+ E PMDRL
Sbjct: 578 DLLKLYAQRAQQEGFTFPLDQPWQEEMEDSFPYQPTADQLKAAQDVKRDM-ENPRPMDRL 636
Query: 116 ICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLS 175
+CGDVGFGKTEVA RA+F V+AGKQ LAPT +L +QH+ + ERF+ YP I++GLL+
Sbjct: 637 VCGDVGFGKTEVATRAVFKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYP-IQIGLLN 695
Query: 176 RFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIAS 235
RF+S E+++ + +K G L+I+VGTH LLG V + +LGLLV+DEEQRFGV QKEKI +
Sbjct: 696 RFRSAEERKDIQNRLKTGELDIVVGTHQLLGKSVNFRDLGLLVIDEEQRFGVNQKEKIKT 755
Query: 236 FKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKY 295
K VDVLTLSATPIPRTLY+AL+G R+ SLI+TPPP R PIKTHLS + E + SA++
Sbjct: 756 LKTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLSPYDPESIRSAVRQ 815
Query: 296 ELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKI 355
ELDRGGQ+FYV+PR++G+EE L++ P IAIAHGQ +LE TM F+ G +I
Sbjct: 816 ELDRGGQIFYVVPRVEGIEEVAGKLREMVPSARIAIAHGQMVEGELEATMLTFSNGDAEI 875
Query: 356 LICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSD 415
L+CT I+ESGLDI NTI+++D Q+FGL+QLYQLRGRVGRA +AHA+LFYP++S L++
Sbjct: 876 LVCTTIIESGLDIPRVNTILIEDAQKFGLSQLYQLRGRVGRAGIQAHAWLFYPNQSSLTE 935
Query: 416 QALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS 475
+A +RL AL+E +LG G+QLA +DM IRG G + G +Q+G + +G DL+ EML ES++
Sbjct: 936 KARKRLRALQEFSQLGSGYQLAVRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLDESIN 995
Query: 476 KVDEHCVISVPYKSVQIDININPRLPSEYINHLENPME---MVNEAEKAAEQDIWCLMQF 532
++ + V Q+D+N+ +P++YI L+ M V AE A+ L Q
Sbjct: 996 EIRGQEIPQV--DEAQVDLNLTAFIPADYITDLDQKMSAYRAVASAETKAD-----LTQT 1048
Query: 533 TESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMID 591
+YG P S + LL+ + ++++A +G ++I K V ++T M + FK++ +
Sbjct: 1049 AVDWNDRYGPIPDSAQQLLRIMELKQLAKSLGFSRIKPEDKQHVMLETPMEEPAFKLLKE 1108
Query: 592 SMTSEVHRNSLTFEGD-QIKAELLLELPR--EQLLNWIFQCLAELYASLPALIK 642
++ + + F G ++ +++ R E L++W L ++ +LP + K
Sbjct: 1109 NLPEHLRSRFVYFPGKVTVRGLGVMKADRQLESLIDW----LGKMKGALPEVEK 1158
>gi|220907244|ref|YP_002482555.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425]
gi|219863855|gb|ACL44194.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425]
Length = 1169
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 284/624 (45%), Positives = 410/624 (65%), Gaps = 17/624 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPA 78
FR + P L+K++ AWER K+K + AI+K+ VDL++LY R +Q+ +P P
Sbjct: 552 FRATAEQAPE-LNKMTGK-AWERTKSKVRKAIRKIAVDLLQLYAQRSQQQGFAFPLDQPW 609
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF ++A
Sbjct: 610 QEELEESFPYQPTPDQVKAIQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAVRAIFKAITA 668
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ LAPT +L +QH+ + ERF+ YP I++GLL+RF+S E++ L +K G L+++
Sbjct: 669 GKQVAFLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRSADERKNILQRLKTGELDVV 727
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG VV+ +LGLLV+DEEQRFGV QKEKI + K VDVLTLSATPIPRTLY+AL
Sbjct: 728 VGTHQLLGKGVVFRDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLSATPIPRTLYMAL 787
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL+ + E + SA++ ELDRGGQVFYV+PR++G+EE
Sbjct: 788 SGVREMSLITTPPPSRRPIKTHLAPYDPETIRSALRQELDRGGQVFYVVPRVEGIEEVAA 847
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ P IAIAHGQ +LE TM F G +IL+CT I+ESGLDI NTI+++D
Sbjct: 848 KLREMVPSARIAIAHGQMEEGELEATMLTFNNGEAEILVCTTIIESGLDIPRVNTILIED 907
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q+FGL+QLYQLRGRVGRA +AHA+LFYP ++L++ A +RL AL+E +LG G+QLA
Sbjct: 908 AQKFGLSQLYQLRGRVGRAGIQAHAWLFYPKLNMLTEAARQRLRALQEFTQLGSGYQLAM 967
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q G + VG DL+ EML E+++++ + V QID+N+
Sbjct: 968 RDMEIRGVGNLLGAEQHGQMDTVGFDLYMEMLDEAIAEIRGQEIPKV--DDTQIDLNLTA 1025
Query: 499 RLPSEYINHLENPME---MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
+P++YI L+ M V A+ E L Q +YG P + L++ +
Sbjct: 1026 FIPADYIPDLDQKMSAYRAVASADSTVE-----LAQIKTDWNDRYGPIPSAALQLIRVVE 1080
Query: 556 VRRMAADIGITKIYASG-KMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELL 614
++++A +G ++I G + + ++T M + + ++ ++ +H + ++ L
Sbjct: 1081 LKQIAKKLGFSRIKPEGTQHIILETPMEEPAWNLLKANLPEHLH-TRFVYSPGKVTVRGL 1139
Query: 615 LELPREQLLNWIFQCLAELYASLP 638
+P ++ L + L+++ +LP
Sbjct: 1140 GVVPADRQLENLIDWLSKMQGALP 1163
>gi|428226477|ref|YP_007110574.1| transcription-repair coupling factor [Geitlerinema sp. PCC 7407]
gi|427986378|gb|AFY67522.1| transcription-repair coupling factor [Geitlerinema sp. PCC 7407]
Length = 1159
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 284/621 (45%), Positives = 404/621 (65%), Gaps = 11/621 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR +P L+K++ AWER K+K + A++K+ VDL++LY R +Q+ +P + P
Sbjct: 543 FRATGGGKPE-LNKMTGK-AWERTKSKVRKAVKKVAVDLLQLYAQRAQQQGFSFPLDMPW 600
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF V+A
Sbjct: 601 QEEMEDSFPYQPTPDQLKATQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTA 659
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ LAPT +L +QH+ + ERF+ YP I++GLL+RF++ E+ + + G L+I+
Sbjct: 660 GKQVAFLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRTAQERRDIQQRLATGELDIV 718
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V + LGLLV+DEEQRFGV QKEKI S K VDVLTLSATPIPRTLY+AL
Sbjct: 719 VGTHQLLGKGVQFKELGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMAL 778
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL+ E V +AI E+DRGGQVFYV+PR+ G+EE
Sbjct: 779 SGVREMSLITTPPPSRRPIKTHLAPLDMETVRTAICQEIDRGGQVFYVVPRVDGIEELAG 838
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ P IAIAHGQ +LE TM F+ G +IL+CT I+ESGLDI NTI+++D
Sbjct: 839 RLREMVPSARIAIAHGQMQEGELEATMLTFSNGEAEILVCTTIIESGLDIPRVNTILIED 898
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q+FGL+QLYQLRGRVGRA +AHA++FYP +S LS+ A +RL A++E +LG G+QLA
Sbjct: 899 AQRFGLSQLYQLRGRVGRAGIQAHAWMFYPQQSQLSEDARKRLRAIQEFTQLGSGYQLAV 958
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V QID+N+
Sbjct: 959 RDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPQV--DDTQIDLNLTA 1016
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI L+ M A D L Q +YG P++ + LL+ + +++
Sbjct: 1017 FIPADYIPDLDQKMSAYRAVATAG--DRHELTQIAADWSDRYGPMPHATQQLLRVMTLKQ 1074
Query: 559 MAADIGITKIYASG-KMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A +G T+I G + V ++T M + + ++ ++ S +H + + ++ L L
Sbjct: 1075 IAKKLGFTRIKPEGTQHVVLETPMEEPAWNLLRGNLPSHLH-SRFVYSSSKVTVRGLGAL 1133
Query: 618 PREQLLNWIFQCLAELYASLP 638
+Q L + L + ++P
Sbjct: 1134 KADQQLESLINWLERMEGAIP 1154
>gi|443313012|ref|ZP_21042625.1| transcription-repair coupling factor Mfd [Synechocystis sp. PCC 7509]
gi|442776820|gb|ELR87100.1| transcription-repair coupling factor Mfd [Synechocystis sp. PCC 7509]
Length = 1166
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 284/624 (45%), Positives = 404/624 (64%), Gaps = 11/624 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR P L+++S +++W K K + AI+K+ VDL++LY R +Q YP + P
Sbjct: 550 FRATGDGTP-VLNRMS-SSSWTTSKNKVRKAIKKLAVDLLKLYAARSQQTGFAYPPDMPW 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF V+A
Sbjct: 608 QEEMEDSFPYAPTPDQLKATADVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTA 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERF+ YP I+VGLL+RF+S E+ + G L+I+
Sbjct: 667 GKQVALLAPTTILTQQHYHTLKERFAPYP-IQVGLLNRFRSAEERRNIQARLATGELDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V +LGLLV+DEEQRFGV QKEKI S + VDVLTLSATPIPRTLY++L
Sbjct: 726 VGTHQLLGKGVTIRDLGLLVIDEEQRFGVNQKEKIKSLRNKVDVLTLSATPIPRTLYMSL 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHLS + E + SAI+ E+DRGGQVFYV+PR+ G+EE
Sbjct: 786 SGIREMSLITTPPPSRRPIKTHLSPYDAETIRSAIRQEIDRGGQVFYVVPRVDGIEETSA 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L+ A PGV +AIAHGQ QLE TM F G +L+CT I+ESGLDI NTI+++D
Sbjct: 846 ALRDALPGVRLAIAHGQMDESQLESTMLTFGNGDADVLVCTTIIESGLDIPRVNTILIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGRA +AHA+LFYP + +LSD A +RL A++E LG G+QL+
Sbjct: 906 AHKFGLSQLYQLRGRVGRAGIQAHAWLFYPKQQMLSDAARQRLRAIQEFATLGSGYQLSM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ E+L ES+ ++ + V + QID+N+
Sbjct: 966 RDMEIRGVGNLLGAEQSGQMEVIGFDLYMEILQESIREIQGAEIPQV--EDTQIDLNLTA 1023
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI L+ M A+ Q L ++G P + + LL+ + +++
Sbjct: 1024 FIPADYIADLDQKMSAYRAVATASSQS--ELDAIAAEWSDRFGAIPPAAKQLLRVMELKQ 1081
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A +G ++I K + ++T M + +K+M++++ + + G I L L
Sbjct: 1082 LAKSLGFSRIKPEAKQHIALETAMAEPAWKLMVENLPEHLKSRYVYAPGKIIVRSLNLLK 1141
Query: 618 PREQLLNWIFQCLAELYASLPALI 641
P +Q L+ + L+++ ++P +
Sbjct: 1142 PNQQ-LDTLIDSLSKMQGAIPEAV 1164
>gi|434392739|ref|YP_007127686.1| transcription-repair coupling factor [Gloeocapsa sp. PCC 7428]
gi|428264580|gb|AFZ30526.1| transcription-repair coupling factor [Gloeocapsa sp. PCC 7428]
Length = 1195
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 285/621 (45%), Positives = 404/621 (65%), Gaps = 11/621 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR + T+ P L+K+S AW K + + AI+K+ VDL++LY R +Q+ YP + P
Sbjct: 579 FR-STTESPPELNKMSGK-AWANTKNRVRKAIKKLAVDLLKLYAARSQQQGLAYPPDQPW 636
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PT DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF V+A
Sbjct: 637 QEELEDSFPYQPTTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTA 695
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERF+ YP I+VGLL+RF++ E+ + + G L+++
Sbjct: 696 GKQVALLAPTTILTQQHYHTLKERFAPYP-IQVGLLNRFRTAEERRDIQRRLTTGELDVV 754
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V + +LGLLVVDEEQRFGV QKEKI S K VDVLTLSATPIPRTLY++L
Sbjct: 755 VGTHQLLGKGVNFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSL 814
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL+ + E V SAI+ ELDRGGQVFYV+PR+ G+EE
Sbjct: 815 SGIREMSLITTPPPTRRPIKTHLAPYDSESVRSAIRQELDRGGQVFYVVPRVDGIEETAA 874
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ PG IAIAHGQ +LE TM F+ G IL+CT I+ESGLDI NTI+++D
Sbjct: 875 NLREMIPGGRIAIAHGQMDEGELESTMLTFSNGEADILVCTTIIESGLDIPRVNTILIED 934
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG G+QLA
Sbjct: 935 AHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRALSDAARQRLRAIQEFTQLGSGYQLAM 994
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + SV QID+N+
Sbjct: 995 RDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPSV--DDTQIDLNLTA 1052
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI ++ M A ++ L+Q +YG P LL+ + +++
Sbjct: 1053 FIPADYITDMDQKMSAYRAVAAAKTKE--ELVQIAAEWSDRYGTIPSGANQLLRVMELKQ 1110
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A +G ++I GK + ++T M + + ++ ++ + R+ + ++ L L
Sbjct: 1111 IAKSLGFSRIKPEGKQHIILETPMEEPAWNLLAANLPEHL-RSRFVYSPGKVTVRGLGVL 1169
Query: 618 PREQLLNWIFQCLAELYASLP 638
Q L + L+++ +LP
Sbjct: 1170 SAHQQLENLIDFLSKMQGALP 1190
>gi|254422402|ref|ZP_05036120.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335]
gi|196189891|gb|EDX84855.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335]
Length = 1177
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 281/621 (45%), Positives = 417/621 (67%), Gaps = 11/621 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
+R + +RP+ L+K++ AWE+ K K + AI+K+ VDL++LY R + + YP++ P
Sbjct: 560 YRTSVEQRPQ-LNKMTGK-AWEKTKGKARKAIKKVAVDLLKLYAQRSQMQGFTYPEDMPW 617
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVALRA+F V+A
Sbjct: 618 QQELEDSFPYNPTPDQLKATQDVKRDM-ESDRPMDRLVCGDVGFGKTEVALRAVFKAVTA 676
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERF+ YP I++GLL+RF++ E+++ L + G L+++
Sbjct: 677 GKQVALLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRTAKERKDILLRLISGELDVV 735
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V + +LGLLVVDEEQRFGV QKEKI + K VDVLTLSATPIPRTLY+AL
Sbjct: 736 VGTHQLLGKTVKFKDLGLLVVDEEQRFGVNQKEKIKAMKAQVDVLTLSATPIPRTLYMAL 795
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHLS + EKV +AI+ ELDRGGQ+FYV+PR++G+EE
Sbjct: 796 SGVREMSLITTPPPSRRPIKTHLSPYDPEKVRTAIRQELDRGGQIFYVVPRVEGIEEVAG 855
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+++A PGV +AIAHGQ +LE TM F+ G +++CT I+ESGLDI NTII++D
Sbjct: 856 RIREAVPGVRLAIAHGQMPEGELEATMLTFSNGDADLMVCTTIIESGLDIPRVNTIIIED 915
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q+FGL+QLYQLRGRVGR+ +AHA+L +P ++ LSD+A +RL A++E +LG G+QLA
Sbjct: 916 SQKFGLSQLYQLRGRVGRSGIQAHAWLLFPKQNQLSDKARKRLRAIQEFTQLGSGYQLAM 975
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G QQ+G + +G DL+ +ML ES++++ + V Q+D+ +
Sbjct: 976 RDMEIRGIGNLLGAQQSGQMEVIGFDLYMDMLEESIAEIRGQEIPQV--DETQVDLKVTA 1033
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI L+ M + A+ + L++ L YG P ++ L+K L +++
Sbjct: 1034 FIPADYIPELDQKMSVYRSLVGASTRR--ELIEIVADLNDHYGSLPSAVGQLVKVLELKQ 1091
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A +G ++I K V ++T M K + ++ + + + + R+ + ++ L +
Sbjct: 1092 IAKPLGFSRIRTEDKQHVVLETPMEKPAWALLHEKVPAHL-RSRFVYAPGKVTVRGLGAV 1150
Query: 618 PREQLLNWIFQCLAELYASLP 638
E+ + + + L + +LP
Sbjct: 1151 KPEKQIENLIEWLGHMQTALP 1171
>gi|440684055|ref|YP_007158850.1| transcription-repair coupling factor [Anabaena cylindrica PCC 7122]
gi|428681174|gb|AFZ59940.1| transcription-repair coupling factor [Anabaena cylindrica PCC 7122]
Length = 1168
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 288/621 (46%), Positives = 400/621 (64%), Gaps = 11/621 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR N K P+ L K++ AWE K K + AI+K+ VDL++LY R +Q+ YP + P
Sbjct: 552 FRTNGDKAPQ-LHKMTGK-AWENTKNKVRKAIKKLAVDLLKLYAARSQQEGFSYPADMPW 609
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PT DQ KA DV+RD+ E E PMDRL+CGDVGFGKTEVA+RAIF V+A
Sbjct: 610 QEEMEDSFPYQPTTDQLKAVQDVKRDM-ESERPMDRLVCGDVGFGKTEVAIRAIFKAVTA 668
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERF+ YP + VGLL+RF+S EK + G L+I+
Sbjct: 669 GKQVALLAPTTILTQQHYHTIKERFAPYP-VNVGLLNRFRSAEEKRNIQKRLATGELDIV 727
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V + +LGLLV+DEEQRFGV QKEKI S K VDVLTLSATPIPRTLY++L
Sbjct: 728 VGTHQLLGKGVQFRDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSL 787
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PI+THL+ E V SAI+ ELDRGGQVFYV+PR++G+EE
Sbjct: 788 SGIREMSLITTPPPTRRPIQTHLAPLKPEIVRSAIRQELDRGGQVFYVVPRVEGIEETTA 847
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ PG AIAHGQ +LE TM F IL+CT I+ESGLDI NTI+++D
Sbjct: 848 NLREMIPGGRFAIAHGQMDESELESTMLTFGNNDADILVCTTIIESGLDIPRVNTILIED 907
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGLAQLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG G+QLA
Sbjct: 908 AHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGSGYQLAM 967
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V QID+N+
Sbjct: 968 RDMEIRGVGNLLGAEQSGQLDAIGFDLYMEMLEEAIREIRGQEIPKV--DDTQIDLNLTA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+PS YI ++ M A ++ L+ + R YG P S LL+ + +++
Sbjct: 1026 FIPSTYITDIDQKMSAYRAVATAKSKEELTLIAAEWTDR--YGTIPVSANQLLRVMELKQ 1083
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A ++G ++I K + ++T M + + ++ +++ E R+ + ++ A L
Sbjct: 1084 IAKNLGFSRIKPENKQHIVLETPMEEPAWNLLAENL-KESMRSRFIYSPGKVTARGLGVF 1142
Query: 618 PREQLLNWIFQCLAELYASLP 638
EQ L + L+++ ++P
Sbjct: 1143 KAEQQLQTLIDTLSKMQGAIP 1163
>gi|254412667|ref|ZP_05026440.1| transcription-repair coupling factor [Coleofasciculus chthonoplastes
PCC 7420]
gi|196180402|gb|EDX75393.1| transcription-repair coupling factor [Coleofasciculus chthonoplastes
PCC 7420]
Length = 1192
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 279/624 (44%), Positives = 412/624 (66%), Gaps = 11/624 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+R +++ P+ L+K+S + AWE+ K + + I+K+ VDL++LY R ++ +P++ +
Sbjct: 578 YRRADSRAPQ-LNKMS-SKAWEKTKNRVRKTIKKLAVDLLKLYAQRSQRSGYAFPEDSSW 635
Query: 80 A-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ KA DV+RDL E + PMDRL+CGDVGFGKTEVALRAIF V+++
Sbjct: 636 QDELEESFPYQPTPDQLKAVQDVKRDL-ESDRPMDRLVCGDVGFGKTEVALRAIFKVITS 694
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ LAPT +L +QH+ + ERF+ YP I VGLL+RF++ E++E + G L+++
Sbjct: 695 GKQVAFLAPTTILTQQHYHTLKERFAPYP-IHVGLLNRFRTAQERKEIQRRLSTGELDVV 753
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH +LG V + +LG+LVVDEEQRFGV QKEKI + K VDVLTL+ATPIPRTLY++L
Sbjct: 754 VGTHQVLGKTVKFRDLGMLVVDEEQRFGVNQKEKIKTLKTQVDVLTLTATPIPRTLYMSL 813
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R IKTHL+ ++ E V +AI+ ELDRGGQVFYV+PR++G+EE
Sbjct: 814 SGVREMSLITTPPPSRRSIKTHLAPYNPEAVRTAIRTELDRGGQVFYVVPRVEGIEEVAT 873
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ P +AIAHGQ +LE TM F+ G ILICT I+ESGLDI NTI+++D
Sbjct: 874 KLREMIPSARLAIAHGQMPEGELEATMLTFSSGEADILICTTIIESGLDIPRVNTILIED 933
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q+FGLAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG G+QLA
Sbjct: 934 AQRFGLAQLYQLRGRVGRSGVQAHAWLFYPKQDTLSDAARKRLRAIQEFTQLGSGYQLAT 993
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V QID+N+
Sbjct: 994 RDMEIRGVGNLLGAEQSGQMDVIGFDLYMEMLQEAIREIQGQEIPQV--DDTQIDLNLTA 1051
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI L+ M AA L+Q +YG P +E LL+ + +++
Sbjct: 1052 FIPADYIPDLDQKMSAYRTV--AAANSHSELVQIAADWHDRYGPLPAPIEQLLRIVELKQ 1109
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A +G ++I GK + ++T M + +K++ +++ + R+ + ++ L L
Sbjct: 1110 VAKSLGFSRIKPEGKQHIALETPMEEPAWKLLKENLPEHL-RSRFVYSPGKVTVRGLGVL 1168
Query: 618 PREQLLNWIFQCLAELYASLPALI 641
+ L + L+++ +LP +
Sbjct: 1169 KANKQLENLIDWLSKMKGALPEAV 1192
>gi|427735491|ref|YP_007055035.1| transcription-repair coupling factor Mfd [Rivularia sp. PCC 7116]
gi|427370532|gb|AFY54488.1| transcription-repair coupling factor Mfd [Rivularia sp. PCC 7116]
Length = 1184
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 278/576 (48%), Positives = 386/576 (67%), Gaps = 10/576 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR K P+ L+K++ AWE K K + ++K+ VDL++LY R +Q YP++ P
Sbjct: 566 FRTTTNKSPQ-LNKMTGK-AWENTKNKVRKTVKKLAVDLLKLYSQRSQQTGFTYPQDSPW 623
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PT DQ KA DV+RD+ E E PMDRL+CGDVGFGKTEVA+RAIF V++
Sbjct: 624 QEEMEDSFPYQPTTDQLKATQDVKRDM-ESERPMDRLVCGDVGFGKTEVAIRAIFKAVTS 682
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF+S EK + G L+I+
Sbjct: 683 GKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRSAEEKRNIQKRLLTGELDIV 741
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V Y +LGLLVVDEEQRFGV QKEKI S K VDVLTLSATPIPRTLY++L
Sbjct: 742 VGTHQLLGKSVQYKDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSL 801
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PI+THLS + E +AI+ ELDRGGQVFYV+PR++G+E+
Sbjct: 802 SGIREMSLITTPPPSRRPIQTHLSPMNPEATRTAIRQELDRGGQVFYVVPRVEGIEDKSA 861
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
F+++ P IAIAHGQ + +LE M F+ G +ILICT I+ESGLDI NTI+++D
Sbjct: 862 FIREMIPNARIAIAHGQMEASELESIMLSFSSGEAEILICTTIIESGLDIPRVNTILIED 921
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q+FGLAQLYQLRGRVGRA +AHA+LFYP + LS+ A +RL A++E +LG G+QLA
Sbjct: 922 AQKFGLAQLYQLRGRVGRAGIQAHAWLFYPRQRSLSEAARKRLRAIQEFTQLGSGYQLAM 981
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + +V + QID+N+
Sbjct: 982 RDMEIRGVGNLLGAEQSGQMNVIGFDLYMEMLEEAIREIRGQEIPTV--EDTQIDLNLTA 1039
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI L+ M A + L +YG P S LL+ + +++
Sbjct: 1040 FIPADYITDLDQKMSAYRAVAVANSKG--ELAMIAAEWNDRYGTVPASANQLLRVMELKQ 1097
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSM 593
+A ++G ++I GK + ++T M + +K++ + +
Sbjct: 1098 LAKNLGFSRIKPDGKQHIVLETPMEEPGWKLLAEKL 1133
>gi|443317227|ref|ZP_21046644.1| transcription-repair coupling factor Mfd [Leptolyngbya sp. PCC 6406]
gi|442783183|gb|ELR93106.1| transcription-repair coupling factor Mfd [Leptolyngbya sp. PCC 6406]
Length = 1195
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 275/575 (47%), Positives = 389/575 (67%), Gaps = 9/575 (1%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFA 83
T+R L+K+S AWE+ K + + A+QK+ VDL++LY R K + YP + P E
Sbjct: 582 TERAPELNKMSGK-AWEKTKGRARKAVQKVAVDLLKLYAQRAKLQGFTYPADMPWQQELE 640
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
FPY+PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+R+IF ++A KQ
Sbjct: 641 DSFPYQPTPDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAVRSIFKAITAHKQVA 699
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +L +QH+ + ERF+ YP I++GLL+RF+S EK++ L +K G L+++VGTH
Sbjct: 700 LLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRSAEEKKDILQRLKTGELDVVVGTHQ 758
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LLG V + +LGLLVVDEEQRFGV QKEKI + K VDVLTLSATPIPRTLY+AL+G R+
Sbjct: 759 LLGKGVQFQDLGLLVVDEEQRFGVNQKEKIKALKAEVDVLTLSATPIPRTLYMALSGVRE 818
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
SLI+TPPP R IKTHLS + E + SAI+ ELDRGGQ+FYV+PR++G+EE L++
Sbjct: 819 MSLITTPPPSRRAIKTHLSPYDPEAIRSAIRQELDRGGQIFYVVPRVEGIEEISGRLREW 878
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
G I +AHGQ +LE TM F+ G IL+CT I+ESGLDI NTI+++D +FG
Sbjct: 879 VIGARIMVAHGQMQEGELESTMLTFSSGEADILVCTTIIESGLDIPRVNTILIEDAHRFG 938
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQLRGRVGR+ +AHA+LFYP + L+ QA +RL A++E +LG G+QLA +DM I
Sbjct: 939 LSQLYQLRGRVGRSGIQAHAWLFYPRQQSLTPQARQRLRAIQEFAQLGSGYQLAMRDMEI 998
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSE 503
RG G + G +Q+G + VG DL+ +ML E ++ + + V + Q+D+ + +P++
Sbjct: 999 RGVGNLLGMEQSGQMDAVGFDLYMDMLEEEIADIRGQEIPKV--DNTQMDLKVTAFIPND 1056
Query: 504 YINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADI 563
YI+ +E M + A + L Q L +YG PY+ E LL+ L ++++A +
Sbjct: 1057 YISDVEQKMSVYRALGTANSKR--ELTQIAADLNDRYGPIPYATEQLLRVLELKQIAKQL 1114
Query: 564 GITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEV 597
G +I GK + ++T M + +K + D++ S +
Sbjct: 1115 GFARIKPEGKQHIILETPMEEPAWKRLQDNIPSHL 1149
>gi|428204065|ref|YP_007082654.1| transcription-repair coupling factor Mfd [Pleurocapsa sp. PCC 7327]
gi|427981497|gb|AFY79097.1| transcription-repair coupling factor Mfd [Pleurocapsa sp. PCC 7327]
Length = 1177
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 286/615 (46%), Positives = 397/615 (64%), Gaps = 11/615 (1%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQ 85
RP L K+S AWE K + + +++K+ VDL+ LY R + YP + P AE
Sbjct: 566 RPPELHKMSGK-AWEATKNRVRKSVRKLAVDLLNLYAKRSQLSGHAYPADTPWQAELEDS 624
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF-CVVSAGKQAMV 144
FPY+PTPDQ KA DV+ DL E + PMDRL+CGDVGFGKTEVA+RAIF V SA KQ
Sbjct: 625 FPYQPTPDQLKAIQDVKIDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTSAHKQVAF 683
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
LAPT +L +QH+ + ERF+ YP I VGLL+RF++ +EK+E L + G L+I+VGTH L
Sbjct: 684 LAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTASEKKEILQRLATGELDIVVGTHQL 742
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264
LG V + +LG+LV+DEEQRFGV QKEKI + K VDVLTL+ATPIPRTLY++L+G R+
Sbjct: 743 LGKEVKFRDLGMLVIDEEQRFGVNQKEKIKAMKTQVDVLTLTATPIPRTLYMSLSGIREM 802
Query: 265 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 324
SLI+TPPP R PIKTHLS ++ E V +AI+ ELDRGGQVFYV+PR++G+EE L Q
Sbjct: 803 SLITTPPPSRRPIKTHLSPYNLEVVRTAIRNELDRGGQVFYVVPRVEGIEETAGQLGQTI 862
Query: 325 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 384
P I +AHGQ S +LE TM F G IL+CT I+ESGLDI NTIIV+D Q FGL
Sbjct: 863 PSARIVVAHGQMDSSELEATMLAFNNGEADILVCTTIIESGLDIPRVNTIIVEDAQLFGL 922
Query: 385 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIR 444
+QLYQLRGRVGR+ +AHA+L YP K L+D A +RL AL+E +LG G+QLA +DM IR
Sbjct: 923 SQLYQLRGRVGRSGVQAHAWLLYPSKGTLTDTARQRLRALQEFTQLGSGYQLATRDMEIR 982
Query: 445 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEY 504
G G + G +Q+G + +G +L+ EML E++ ++ + V QID+ + +P++Y
Sbjct: 983 GVGNLLGVEQSGQMEAIGFELYMEMLQEAIEEIQGQEIPQV--DDAQIDLKLTAFIPTDY 1040
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
I LE M+ A + L Q +YGK P +E LLK + ++++A +G
Sbjct: 1041 IPDLEQKMDAYRAVALANSKR--ELQQIAADWNDRYGKLPTPVEQLLKVVELKQIAKSLG 1098
Query: 565 ITKIYASG-KMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLL 623
+++ G + V ++T M + +K++ + + + R+ + ++ L L +Q L
Sbjct: 1099 FSRVKPDGSQHVILETPMEEPAWKLLQEKLPEHL-RSRFVYSPKKVTVRGLGVLNPQQQL 1157
Query: 624 NWIFQCLAELYASLP 638
+ L ++ +LP
Sbjct: 1158 ENLIDWLGKMLDALP 1172
>gi|298492665|ref|YP_003722842.1| transcription-repair coupling factor ['Nostoc azollae' 0708]
gi|298234583|gb|ADI65719.1| transcription-repair coupling factor ['Nostoc azollae' 0708]
Length = 1166
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 286/624 (45%), Positives = 395/624 (63%), Gaps = 11/624 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR + + P L K++ AW+ K K + AI+K+ VDL++LY R +Q+ YP + P
Sbjct: 550 FRTSGDQTP-ALHKMTGK-AWDNTKNKVRKAIKKLAVDLLKLYAARSQQQGFAYPADMPW 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+ T DQ KA DV+RD+ E E PMDRL+CGDVGFGKTEVA+RAIF V+A
Sbjct: 608 QEEMEDSFPYQATTDQLKAVQDVKRDM-ESERPMDRLVCGDVGFGKTEVAIRAIFKAVTA 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ VLAPT +L +QH+ + ERFS YP + VGLL+RF+S EK + G L+I+
Sbjct: 667 GKQVAVLAPTTILTQQHYHTIKERFSPYP-VNVGLLNRFRSAEEKRNIQKRLATGELDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V + +LGLLV+DEEQRFGV QKEKI S K VDVLTLSATPIPRTLY++L
Sbjct: 726 VGTHQLLGKGVQFRDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSL 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PI+THL+ + E V SAI+ ELDRGGQVFYV+PR++G+EE
Sbjct: 786 SGIREMSLITTPPPTRRPIQTHLAPLNPEIVRSAIRQELDRGGQVFYVVPRVEGIEETTA 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ PG AIAHGQ +LE TM F IL+CT I+ESGLDI NTI+++D
Sbjct: 846 NLREMIPGGRFAIAHGQMEESELESTMLTFGNNDADILVCTTIIESGLDIPRVNTILIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGLAQLYQLRGRVGRA +AHA+LFY + LSD A RL A++E +LG G+QLA
Sbjct: 906 AHRFGLAQLYQLRGRVGRAGIQAHAWLFYHKQRELSDAARLRLRAIQEFTQLGSGYQLAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V QID+N+
Sbjct: 966 RDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPKV--DDTQIDLNLTA 1023
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+PS YI ++ M A ++ L +YG P LL+ + +++
Sbjct: 1024 FIPSTYITDIDQKMSAYRAVATAKSKE--ELKSIAAEWTDRYGTIPVPANQLLRVMELKQ 1081
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A +IG ++I K + ++T M + + ++ +++T E RN + ++ A L L
Sbjct: 1082 LARNIGFSRIKPENKQHIVLETPMEEPAWNLLAENLT-ETMRNRFVYSSGKVTARGLGVL 1140
Query: 618 PREQLLNWIFQCLAELYASLPALI 641
EQ L + ++ ++P +
Sbjct: 1141 KAEQQLQTLIDAFGKMQGAIPEAV 1164
>gi|428305014|ref|YP_007141839.1| transcription-repair coupling factor [Crinalium epipsammum PCC 9333]
gi|428246549|gb|AFZ12329.1| transcription-repair coupling factor [Crinalium epipsammum PCC 9333]
Length = 1153
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 282/624 (45%), Positives = 400/624 (64%), Gaps = 11/624 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR + P L K+S AWE+ K K + AI+K+ VDL+ LY R +Q YP + P
Sbjct: 537 FRHTADQAP-ALHKMSGK-AWEKTKGKVRKAIKKLAVDLLNLYAKRSQQTGFTYPPDSPW 594
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF V+A
Sbjct: 595 QEELEDSFPYQPTPDQLKATQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTA 653
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ + LAPT +L +QH+ + ERF+ YP + VGLL+RF+S E+ + + G L+I+
Sbjct: 654 GKQVVFLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRSAEERRNIIQRLATGELDIV 712
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + +LGLLVVDEEQRFGV QKEKI S K VDVLTLSATPIPRTLY++L
Sbjct: 713 VGTHQLLSKEIKVKDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSL 772
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHLS+F E + +AI+ ELDRGGQVFYV+PRI+G+EE
Sbjct: 773 SGIREMSLITTPPPSRRPIKTHLSSFDPEAIRTAIRQELDRGGQVFYVVPRIEGIEETGA 832
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+++ PG +AIAHGQ +LE TM F+ G IL+CT I+ESGLDI NTI+++D
Sbjct: 833 KVREMIPGCRLAIAHGQMDESELEATMLAFSSGEADILLCTTIIESGLDIPRVNTILIED 892
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGRA +AHA+LFYP +S L+D A +RL A++E +LG G+QLA
Sbjct: 893 AHKFGLSQLYQLRGRVGRAGIQAHAWLFYPKQSKLTDAARQRLRAIQEFTQLGSGYQLAT 952
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML ES+ ++ + V QID+ +
Sbjct: 953 RDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEESIREIRGQEIPKV--DDTQIDLQLTA 1010
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI LE M A ++ L +YG+ P + + LL + +++
Sbjct: 1011 LIPADYIQDLEQKMSAYRAVASANSKE--ELNNIAAEWSDRYGEIPKAAKQLLCVMELKQ 1068
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A +G ++I K + ++T M + + ++ ++ + R+ + ++ L L
Sbjct: 1069 VAKQLGFSRIKPEAKQHIVLETPMEEPAWNLISANLPDHL-RSRFVYSKGKVTIRGLAVL 1127
Query: 618 PREQLLNWIFQCLAELYASLPALI 641
++ L + L ++ ++P +
Sbjct: 1128 KADKQLESLIDWLGKMQGAIPEAV 1151
>gi|428777224|ref|YP_007169011.1| transcription-repair coupling factor [Halothece sp. PCC 7418]
gi|428691503|gb|AFZ44797.1| transcription-repair coupling factor [Halothece sp. PCC 7418]
Length = 1164
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 281/609 (46%), Positives = 398/609 (65%), Gaps = 10/609 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYE 89
L+K+S AW+ K K + A++K+ +DL+ LY R + YP++ P E FPY+
Sbjct: 557 LNKMSGK-AWQNTKNKVEKAVKKVAIDLLNLYAQRSQLSGYAYPEDTPWQQELEDSFPYQ 615
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ KA DV+RDL E E PMDRL+CGDVGFGKTEVA+RAIF ++ +GKQ LAPT
Sbjct: 616 ATPDQLKAVQDVKRDL-ESELPMDRLVCGDVGFGKTEVAIRAIFKILMSGKQVAFLAPTT 674
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+L +QH+ + ERF+ YP I +GLL+RF++ E+++ L + G L+++VGTH LL V
Sbjct: 675 ILTQQHYHTLKERFAPYP-INIGLLNRFRTANERKDILKRLSTGELDVVVGTHQLLNKSV 733
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
Y +LG+LVVDEEQRFGV QKEKI S K VDVLTL+ATPIPRTLY++L+G R+ SLI+T
Sbjct: 734 KYKDLGMLVVDEEQRFGVNQKEKIKSMKTEVDVLTLTATPIPRTLYMSLSGIREMSLITT 793
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PPP R PIKTHLS + E + +AI+ ELDRGGQVFYV+PR++G+EE L++ PG I
Sbjct: 794 PPPSRRPIKTHLSPYDGEAIRTAIRNELDRGGQVFYVVPRVEGIEETAGKLREMVPGARI 853
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
AIAHGQ +LE TM F G IL+CT I+ESGLDI NTI+V+D Q+FGL+QLYQ
Sbjct: 854 AIAHGQMEEAELESTMLTFNNGDADILVCTTIIESGLDIPRVNTIVVEDSQKFGLSQLYQ 913
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR+ +AHA+L YP +S LSD A +RL AL+E +LG G+QLA +D+ IRG G +
Sbjct: 914 LRGRVGRSGIQAHAWLLYPKQSSLSDTAKKRLRALQEFTQLGSGYQLAMRDLEIRGVGEL 973
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G +Q+G + VG DL+ ML E++ +V + V QID+ + +P+ YI ++
Sbjct: 974 LGAKQSGQMNAVGFDLYMSMLQEAIQEVQGQDIPQV--DDTQIDLKLTAFVPNHYITDMD 1031
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
M+ A+ + L Q + R +YG+ P ++ LL+ + ++++ +G ++I
Sbjct: 1032 QKMDAYRTVTMASSKK--ELDQIRQDWRDRYGELPAPVQQLLQVMELKQITKSLGFSRIK 1089
Query: 570 ASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQ 628
GK V ++T M + +K + + + + + +G ++ L L +Q L+ +
Sbjct: 1090 PEGKQHVALETPMEEPAWKRLQEHLPKHIASRFIYSKG-KVTVRGLGVLKTQQQLDNLIN 1148
Query: 629 CLAELYASL 637
L EL ASL
Sbjct: 1149 WLGELRASL 1157
>gi|17232707|ref|NP_489255.1| transcriptional-repair coupling factor [Nostoc sp. PCC 7120]
gi|17134354|dbj|BAB76914.1| transcriptional-repair coupling factor [Nostoc sp. PCC 7120]
Length = 1185
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 282/626 (45%), Positives = 395/626 (63%), Gaps = 11/626 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR K P L K++ AW+ K + + AI+K+ VDL++LY R +Q+ YP++ P
Sbjct: 567 FRTTGDKAPE-LHKMTGK-AWDNTKNRVRKAIKKLAVDLLKLYAARSQQQGFAYPQDMPW 624
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+ T DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF V++
Sbjct: 625 QEEMEDSFPYQATTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTS 683
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERFS YP + VGLL+RF++ E+ + G L+I+
Sbjct: 684 GKQVALLAPTTILTQQHYHTLKERFSPYP-VNVGLLNRFRTAEERRNIQKRLATGELDIV 742
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V + +LGLLV+DEEQRFGV QKEKI S K VDVLTLSATPIPRTLY++L
Sbjct: 743 VGTHQLLGKSVSFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSL 802
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHLS + E V SAI+ ELDRGGQVFYV+PR+ G+EE
Sbjct: 803 SGIREMSLITTPPPTRRPIKTHLSPRNPESVRSAIRQELDRGGQVFYVVPRVDGIEEITA 862
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ PG AIAHGQ +LE TM F+ G IL+CT I+ESGLDI NTI+++D
Sbjct: 863 NLREMVPGARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILIED 922
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG G+QLA
Sbjct: 923 AHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGSGYQLAM 982
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML ES+ ++ + V QID+N+
Sbjct: 983 RDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEESIREIRGQEIPKV--DDTQIDLNLTA 1040
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI ++ M A +D L Q +YG P S LL+ + +++
Sbjct: 1041 FIPADYITDIDQKMSAYRAVAAAKSKD--ELTQIAAEWSDRYGTLPVSANQLLRVMELKQ 1098
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A +G ++I K V ++T M + + ++ ++ + + + ++ L L
Sbjct: 1099 LAKKLGFSRIKPESKQHVVLETPMEEPAWNLLAANLPEHL-KTRFVYSPGKVTVRGLAVL 1157
Query: 618 PREQLLNWIFQCLAELYASLPALIKY 643
+Q L + L + ++ Y
Sbjct: 1158 KADQQLQSLIDALGRMQGAIADTADY 1183
>gi|428298679|ref|YP_007136985.1| transcription-repair coupling factor [Calothrix sp. PCC 6303]
gi|428235223|gb|AFZ01013.1| transcription-repair coupling factor [Calothrix sp. PCC 6303]
Length = 1176
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 284/616 (46%), Positives = 396/616 (64%), Gaps = 11/616 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR + K P L+K++ WE K + + AI+K+ VDL++LY R KQ+ +P++ P
Sbjct: 559 FRTSANKNPE-LNKMTGKV-WENTKNRVRKAIKKLAVDLLKLYAARAKQEGFAFPEDMPW 616
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+ TPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF V+A
Sbjct: 617 QQELEDSFPYQATPDQLKATQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTA 675
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERFS YP + VGLL+RF+S AE+ E L + G L+I+
Sbjct: 676 GKQVALLAPTTILTQQHYHTIKERFSPYP-VNVGLLNRFRSPAERREILKRLASGDLDIV 734
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + LGLLVVDEEQRFGV QKEKI S K VDVLTLSATPIPRTLY++L
Sbjct: 735 VGTHQLLSKEISIKELGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSL 794
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL+ + E + +A++ ELDRGGQVFYV+PR++G+EE
Sbjct: 795 SGIREMSLITTPPPSRRPIKTHLAPRNPETIRAALRQELDRGGQVFYVVPRVEGIEETAI 854
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ G IAIAHGQ QLE TM F+ G IL+CT I+ESGLDI NTI+++D
Sbjct: 855 KLREIVGGARIAIAHGQMDESQLESTMLTFSNGDADILVCTTIIESGLDIPRVNTILIED 914
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGLAQLYQLRGRVGRA +AHA+LFYP + LS+ A +RL A++E +LG G+QLA
Sbjct: 915 AHRFGLAQLYQLRGRVGRAGIQAHAWLFYPQQRTLSEAARQRLRAIQEFTQLGSGYQLAM 974
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D IRG G + G +Q+G + +G DL+ EML E++ ++ + V QID+ +
Sbjct: 975 RDAEIRGVGNLLGAEQSGQLDVIGFDLYMEMLEEAIREIRGQEIPKV--DDTQIDLKLTA 1032
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+PS YI + M AA + + LM + +YGK P LL+ + +++
Sbjct: 1033 FIPSNYIPDADQKMSAYRAV--AAAKSVDELMLISLEWNDRYGKIPTPANQLLRVMELKQ 1090
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A IG ++I K V ++T M + + ++ ++T + R+ + ++ L L
Sbjct: 1091 LAKKIGFSRIKPEAKQHVALETPMEEPAWNLLAANLTDNM-RSRFVYSPGKVIVRGLAVL 1149
Query: 618 PREQLLNWIFQCLAEL 633
+Q L + A++
Sbjct: 1150 KADQQLKTLIDAFAKM 1165
>gi|427709632|ref|YP_007052009.1| transcription-repair coupling factor [Nostoc sp. PCC 7107]
gi|427362137|gb|AFY44859.1| transcription-repair coupling factor [Nostoc sp. PCC 7107]
Length = 1168
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 276/572 (48%), Positives = 377/572 (65%), Gaps = 10/572 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR K P L K++ AW+ K + + AI+K+ VDL++LY R +Q+ YP + P
Sbjct: 552 FRTTGDKAPE-LHKMTGK-AWDNTKNRVRKAIKKLAVDLLKLYAARSQQQGYAYPHDMPW 609
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PT DQ KA DV+RD+ ER+ PMDRL+CGDVGFGKTEVA+RAIF V++
Sbjct: 610 QEEMEDSFPYQPTTDQLKAVQDVKRDM-ERDRPMDRLVCGDVGFGKTEVAIRAIFKAVTS 668
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERF+ YP + VGLL+RF+S E+ + G L+I+
Sbjct: 669 GKQVALLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRSAEERRTIQKRLATGELDIV 727
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V + +LGLLV+DEEQRFGV QKEKI S K VDVLTLSATPIPRTLY++L
Sbjct: 728 VGTHQLLGKSVSFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSL 787
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHLS + E V SAI+ ELDRGGQVFYV+PR+ G+EE
Sbjct: 788 SGIREMSLITTPPPTRRPIKTHLSPRNPESVRSAIRQELDRGGQVFYVVPRVDGIEEITA 847
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ PG AIAHGQ +LE TM F+ G IL+CT I+ESGLDI NTI+++D
Sbjct: 848 NLREMVPGARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILIED 907
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG G+QLA
Sbjct: 908 AHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRTLSDAARQRLRAIQEFTQLGSGYQLAM 967
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V QID+N+
Sbjct: 968 RDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPQV--DDTQIDLNLTA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI ++ M A Q+ L Q +YG P LL+ + +++
Sbjct: 1026 FVPADYIPDIDQKMSAYRAVAAAKSQE--ELTQIAAEWSDRYGTLPVPANQLLRVMELKQ 1083
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMM 589
+A +G ++I K V ++T M + + ++
Sbjct: 1084 LAKKLGFSRIKPENKQHVILETPMEEPAWNLL 1115
>gi|427723269|ref|YP_007070546.1| transcription-repair coupling factor [Leptolyngbya sp. PCC 7376]
gi|427354989|gb|AFY37712.1| transcription-repair coupling factor [Leptolyngbya sp. PCC 7376]
Length = 1160
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 279/624 (44%), Positives = 407/624 (65%), Gaps = 18/624 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
+R RP+ L KL AWE+ K K + +++K+ VDL+++Y R + K YP + P
Sbjct: 543 YRKTAKGRPQ-LHKLGGK-AWEKTKNKVRKSVKKLAVDLLKIYAQRAEMKGTIYPVDAPW 600
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+ TPDQ KA D++RDL E + PMDRL+CGDVGFGKTEVA+RAIF VV++
Sbjct: 601 QQEMEDSFPYQATPDQLKAVQDIKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKVVTS 659
Query: 139 G-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 197
G KQ +LAPT +L +QH+ + ERFS YP I +GLL+RF++ +E++E + +K+G L+I
Sbjct: 660 GHKQVALLAPTTILTQQHYHTLKERFSPYP-INIGLLNRFRTASEQKEIMQRLKNGELDI 718
Query: 198 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 257
+VGT LLG V + +LG+LVVDEEQRFGV QKEKI + K VDVLTLSATPIPRTLY++
Sbjct: 719 VVGTQKLLGKEVKFKDLGMLVVDEEQRFGVNQKEKIKAMKTKVDVLTLSATPIPRTLYMS 778
Query: 258 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
L+G R+ SLI+TPPP R PI+TH+S + E + +A++ ELDRGGQ+FYV+PR++G+EE
Sbjct: 779 LSGIREMSLITTPPPSRRPIQTHVSRYQSEAIRTALRNELDRGGQIFYVVPRVEGIEEIA 838
Query: 318 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 377
L++ P +AIAHGQ LE TM F+ G IL+CT IVESGLDI NTIIV+
Sbjct: 839 GQLREMIPSARVAIAHGQMNESDLEATMLTFSNGEADILLCTTIVESGLDIPRVNTIIVE 898
Query: 378 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 437
D Q+FGL+QLYQLRGRVGR+ +AHA+L YP K L+++A +RL AL+E +LG G+QLA
Sbjct: 899 DSQKFGLSQLYQLRGRVGRSGIQAHAWLLYPSKGELTEKARKRLRALQEFSQLGSGYQLA 958
Query: 438 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 497
+DM IRG G + G +Q+G + +G DL+ +ML E +S++ + V Q+D+ +
Sbjct: 959 MRDMEIRGVGNLLGAEQSGQMEAIGFDLYMDMLQECISEIRGQEIPQV--DDCQVDLKLT 1016
Query: 498 PRLPSEYINHLENPME---MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+P YI E ++ ++ A E+ MQ +YGK P S+E LL+ +
Sbjct: 1017 AFIPGNYITDTEQKLDAYRLITNANSKPER-----MQIASEWTERYGKLPSSVEQLLQVI 1071
Query: 555 YVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL 613
++ +A +G ++I GK + ++T M + +K++ + + +H + + ++
Sbjct: 1072 ELKSIAKSLGFSRIKPEGKQNILLETPMEEPAWKLLEEKLPKHLH-SRFVYTPKKVTVRG 1130
Query: 614 LLELPREQLLNWIFQCLAELYASL 637
L + +Q L+ + Q L + +L
Sbjct: 1131 LGTIKPQQQLDNLIQWLGMMQGAL 1154
>gi|434407515|ref|YP_007150400.1| transcription-repair coupling factor Mfd [Cylindrospermum stagnale
PCC 7417]
gi|428261770|gb|AFZ27720.1| transcription-repair coupling factor Mfd [Cylindrospermum stagnale
PCC 7417]
Length = 1161
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 282/621 (45%), Positives = 396/621 (63%), Gaps = 11/621 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR N K P L K+S AW+ K K + AI+K+ VDL++LY R +Q+ YP + P
Sbjct: 545 FRTNGDKAPE-LHKMSGK-AWDNTKNKVRKAIKKLAVDLLKLYAARSQQQGFAYPADMPW 602
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PT DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF V+A
Sbjct: 603 QEELEDSFPYQPTTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTA 661
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERF+ YP + VGLL+RF+S E+ + + G L+I+
Sbjct: 662 GKQVALLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRSAEERRDIQKRLATGELDIV 720
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V + +LGLLVVDEEQRFGV QKEKI S K VDVLTLSATPIPRTLY+++
Sbjct: 721 VGTHQLLGKGVQFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSM 780
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PI+THL+ + E V SAI+ ELDRGGQVFYV+PR++G+EE
Sbjct: 781 SGIREMSLITTPPPSRRPIQTHLAPLNPEIVRSAIRQELDRGGQVFYVVPRVEGIEETTA 840
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ PG AIAHGQ +LE TM F+ IL+CT I+ESGLDI NTI+++D
Sbjct: 841 NLREMIPGGRFAIAHGQMDESELESTMLTFSSSEADILVCTTIIESGLDIPRVNTILIED 900
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGLAQLYQLRGRVGRA +AHA+LFYP + +LSD A +RL A++E +LG G+QLA
Sbjct: 901 AHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQRVLSDAARQRLRAIQEFTQLGSGYQLAM 960
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V QID+N+
Sbjct: 961 RDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPKV--DDTQIDLNLTA 1018
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI L+ M A + L Q ++G P LL+ + +++
Sbjct: 1019 FIPADYITDLDQKMSAYRAVATAKSKG--ELKQIAAEWSDRFGTIPVPANQLLRVMELKQ 1076
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+ +G ++I K V ++T M + + ++ ++ SE R+ + ++ L
Sbjct: 1077 LGKKLGFSRIKPENKQHVVLETPMAEPAWNLLAANL-SENMRSRFVYSPGKVTVRGLGVF 1135
Query: 618 PREQLLNWIFQCLAELYASLP 638
+Q L + ++ ++P
Sbjct: 1136 KADQQLQNLIDAFGKMQGAIP 1156
>gi|332706023|ref|ZP_08426096.1| transcription-repair coupling factor mfd [Moorea producens 3L]
gi|332355283|gb|EGJ34750.1| transcription-repair coupling factor mfd [Moorea producens 3L]
Length = 1295
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 284/621 (45%), Positives = 399/621 (64%), Gaps = 11/621 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR T P+ L K+S T WE+ K + + +I+K+ VDL++LY R +Q +P + P
Sbjct: 669 FRHTGTGLPQ-LHKMSGKT-WEKTKNRVRKSIKKVAVDLLKLYAQRAQQSGYCFPADSPW 726
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ KA DV+RDL E + PMDRL+CGDVGFGKTEVA+RAIF V++
Sbjct: 727 QQELEDSFPYQPTPDQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTS 785
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ LAPT +L +QH+ + ERFS YP I VGLL+RF+S EK + L +K G L+++
Sbjct: 786 NKQVAFLAPTTILTQQHYHTIKERFSPYP-INVGLLNRFRSPQEKRDILQRLKTGELDVV 844
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V + LGLLV+DEEQRFGV QKEKI SFK VDVLTLSATPIPRTLY++L
Sbjct: 845 VGTHQLLGKSVTFRELGLLVIDEEQRFGVNQKEKIKSFKTQVDVLTLSATPIPRTLYMSL 904
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHLS + E V +AI+ ELDRGGQVFYV+PR++G+EE
Sbjct: 905 SGVREMSLITTPPPLRRPIKTHLSPYKPEAVRTAIRMELDRGGQVFYVVPRVEGIEEVAA 964
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ IAIAHGQ +LE M F+ G IL+CT I+ESGLDI NTI+++D
Sbjct: 965 ELREMILEARIAIAHGQLDPAELESIMLTFSNGEADILVCTTIIESGLDIPRVNTIVIED 1024
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGLAQLYQLRGRVGRA +AHA+L YP++ +LS+ A +RL A++E +LG G+ LA
Sbjct: 1025 AHKFGLAQLYQLRGRVGRAGIQAHAWLLYPNQKVLSEAAKKRLRAIQEFTQLGSGYLLAT 1084
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V QID+ I
Sbjct: 1085 RDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQEAIKEIQGQEIPQV--DDTQIDLQITA 1142
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI ++ + AA Q L Q +YG P E LL+ + +++
Sbjct: 1143 FIPADYIPDIDQKISAYRGVAAAASQK--ELAQIAADWSDRYGPIPSVAEQLLRVMELKQ 1200
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+ +G ++I GK + ++T M + +K++ +++ + R+ + ++ L L
Sbjct: 1201 LGKSLGFSRIRPEGKQHILLETPMEEPAWKLLQENLPQHL-RSRFVYSPGKVTVRGLGLL 1259
Query: 618 PREQLLNWIFQCLAELYASLP 638
+ L + L ++ +LP
Sbjct: 1260 KTNKQLESLIDWLGKMQGALP 1280
>gi|427711555|ref|YP_007060179.1| transcription-repair coupling factor Mfd [Synechococcus sp. PCC 6312]
gi|427375684|gb|AFY59636.1| transcription-repair coupling factor Mfd [Synechococcus sp. PCC 6312]
Length = 1154
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 275/573 (47%), Positives = 385/573 (67%), Gaps = 9/573 (1%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQF 86
P L+KLS AWE+ K K + AI+K+ VDL++LY R +Q+ YP + P E F
Sbjct: 543 PPQLNKLSGQ-AWEKTKQKVRKAIKKVAVDLLQLYAQRAQQQGFRYPPDQPWQVEMEDSF 601
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
PY+PTPDQ KA DV++D+ E + PMDRL+CGDVGFGKTEVA+RAIF ++AGKQ VLA
Sbjct: 602 PYQPTPDQLKATQDVKQDM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVAVLA 660
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +L +QH+ + ERF+ YP I VGLL+RF++ E++ L + G L+++VGTH LLG
Sbjct: 661 PTTILTQQHYHTLKERFAPYP-IHVGLLNRFRTGEERKNILQRLVTGELDVVVGTHQLLG 719
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
V + +LGLLV+DEEQRFGV QKEKI S K +DVLTLSATPIPRTLY+AL+G R+ S+
Sbjct: 720 KGVNFRDLGLLVIDEEQRFGVNQKEKIKSLKTQLDVLTLSATPIPRTLYMALSGVREMSV 779
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPPP R PI+THLS + E + SAI+ ELDRGGQVFYV+PR+ G+EE LQ PG
Sbjct: 780 ITTPPPSRRPIQTHLSPYDLEAIRSAIRQELDRGGQVFYVVPRVAGIEEVAGKLQMMVPG 839
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
I +AHGQ +LE TM F +IL+CT I+ESGLDI NTI+V+D +FGLAQ
Sbjct: 840 ARILVAHGQMQEGELESTMLGFFNAEAEILVCTTIIESGLDIPRVNTILVEDAHKFGLAQ 899
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
LYQLRGRVGRA +AHA+LFYP + L+++A RL A++E +LG G+QLA +DM IRG
Sbjct: 900 LYQLRGRVGRAGIQAHAWLFYPRQESLTEEARARLRAIQEFTQLGSGYQLAMRDMEIRGV 959
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
G + G +Q G + +G DL+ EML E+++++ + +V + QID+++ +P++YI
Sbjct: 960 GNLLGAEQHGQMDAIGFDLYVEMLEEAIAEIRGQEIPTV--EDTQIDLSVTAFIPADYIP 1017
Query: 507 HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGIT 566
+E M +A QD L Q L +YG P + L++ + +++MA +G +
Sbjct: 1018 DMEQKMSTYRAI--SASQDGLALKQVLLDLTDRYGVPPAPVLQLIRVVELKQMAKKLGFS 1075
Query: 567 KIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVH 598
+I K V ++T M + + ++ ++ + +
Sbjct: 1076 RIRPESKQHVILETPMAEPAWNVLASNLPTHLQ 1108
>gi|75908979|ref|YP_323275.1| transcription-repair coupling factor [Anabaena variabilis ATCC 29413]
gi|75702704|gb|ABA22380.1| transcription-repair coupling factor [Anabaena variabilis ATCC 29413]
Length = 1188
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 277/613 (45%), Positives = 392/613 (63%), Gaps = 10/613 (1%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQ 85
+P L K++ AW+ K + + AI+K+ VDL++LY R +Q+ YP++ P E
Sbjct: 578 KPPELHKMTGK-AWDNTKNRVRKAIKKLAVDLLKLYAARSQQQGFAYPQDMPWQEEMEDS 636
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
FPY+ T DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF V++GKQ +L
Sbjct: 637 FPYQATTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTSGKQVALL 695
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
APT +L +QH+ + ERF+ YP + VGLL+RF++ E+ + G L+I+VGTH LL
Sbjct: 696 APTTILTQQHYHTIKERFAPYP-VNVGLLNRFRTAEERRNIQKRLATGELDIVVGTHQLL 754
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
G V + +LGLLV+DEEQRFGV QKEKI S K VDVLTLSATPIPRTLY++L+G R+ S
Sbjct: 755 GKSVNFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMS 814
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
LI+TPPP R PIKTHLS + E V SAI+ ELDRGGQVFYV+PR+ G+EE L++ P
Sbjct: 815 LITTPPPTRRPIKTHLSPRNPESVRSAIRQELDRGGQVFYVVPRVDGIEEITANLREMVP 874
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
G AIAHGQ +LE TM F+ G IL+CT I+ESGLDI NTI+++D +FGL+
Sbjct: 875 GARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILIEDAHRFGLS 934
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG G+QLA +DM IRG
Sbjct: 935 QLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGSGYQLAMRDMEIRG 994
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYI 505
G + G +Q+G + +G DL+ EML ES+ ++ + V QID+N+ +P++YI
Sbjct: 995 VGNLLGAEQSGQMEAIGFDLYMEMLEESIREIRGQEIPKV--DDTQIDLNLTAFIPADYI 1052
Query: 506 NHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
++ M A +D L Q +YG P S LL+ + ++++A +G
Sbjct: 1053 TDIDQKMSAYRAVAAAKSKD--ELTQIAAEWSDRYGTLPVSANQLLRVMELKQLAKKLGF 1110
Query: 566 TKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLN 624
++I K V ++T M + + ++ ++ + + + ++ L L +Q L
Sbjct: 1111 SRIKPESKQHVVLETPMEEPAWNLLAANLPEHL-KTRFVYSPGKVTVRGLAVLKADQQLQ 1169
Query: 625 WIFQCLAELYASL 637
+ L + ++
Sbjct: 1170 SLIDALGRMQGAI 1182
>gi|427421913|ref|ZP_18912096.1| transcription-repair coupling factor Mfd [Leptolyngbya sp. PCC 7375]
gi|425757790|gb|EKU98644.1| transcription-repair coupling factor Mfd [Leptolyngbya sp. PCC 7375]
Length = 1168
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 280/609 (45%), Positives = 402/609 (66%), Gaps = 10/609 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR + KRP L+K++ AWE+ KT+ K AIQK+ VDL++LY R + + YP + P
Sbjct: 548 FRASAEKRP-ALNKMTGK-AWEKTKTRAKKAIQKVAVDLLKLYAQRSELEGFTYPVDMPW 605
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ KA DV+RD+ E PMDRL+CGDVGFGKTEVA+R+IF V A
Sbjct: 606 QQELEDSFPYQPTPDQLKATQDVKRDM-ESPRPMDRLVCGDVGFGKTEVAIRSIFKAVIA 664
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ER++ YP I+VGLL+RF++ E+++ + + G L+++
Sbjct: 665 GKQVAMLAPTTILTQQHYHTIKERYAPYP-IQVGLLNRFRTANERKDIIQRLATGELDVV 723
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V + +LGLLVVDEEQRFGV QKEKI + K VDVLTLSATPIPRTLY++L
Sbjct: 724 VGTHQLLGKAVKFKDLGLLVVDEEQRFGVNQKEKIKAMKTQVDVLTLSATPIPRTLYMSL 783
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PI THL+ EKV +AI+ ELDRGGQ+FYV+PR++G+EE
Sbjct: 784 SGVREMSLITTPPPSRRPIITHLAPHDMEKVRAAIRQELDRGGQIFYVVPRVEGIEEIAA 843
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+++ P + +A+AHGQ +LE TM F+ G +++CT I+ESGLDI NTI+++D
Sbjct: 844 RIREMIPSIRLAVAHGQMPEGELEATMLAFSNGEADLMVCTTIIESGLDIPRVNTILIED 903
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q+FGL+QLYQLRGRVGR+ +AHA+LF+P + LSD+A +RL A++E +LG G+QLA
Sbjct: 904 SQKFGLSQLYQLRGRVGRSGIQAHAWLFFPRQDKLSDKARKRLRAIQEFTQLGSGYQLAM 963
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G QQ+G + +G DL+ +ML E+++++ + V Q+D+ +
Sbjct: 964 RDMEIRGIGNLLGVQQSGQMEVIGFDLYMDMLQEAIAEIRGQEIPQV--DETQVDLKLTA 1021
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P+ YI + M + A + LMQ L ++G P ++E L+K L +++
Sbjct: 1022 FIPNNYIGDTDQKMSVYRSLVAADTKR--ELMQIVTDLNDRFGTIPPAVEQLVKMLELKQ 1079
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A +G KI GK V M+T M +K++ + + + + G L +
Sbjct: 1080 IAKPLGFAKIKPEGKQHVVMETPMEAPAWKLLHEKVPGHLKSRFIYGSGKVTVRGLGVMK 1139
Query: 618 PREQLLNWI 626
P +QL N I
Sbjct: 1140 PDKQLENLI 1148
>gi|428315581|ref|YP_007113463.1| transcription-repair coupling factor [Oscillatoria nigro-viridis PCC
7112]
gi|428239261|gb|AFZ05047.1| transcription-repair coupling factor [Oscillatoria nigro-viridis PCC
7112]
Length = 1190
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 282/621 (45%), Positives = 404/621 (65%), Gaps = 11/621 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR K P L+KL+ T WE+ KTK + A++K+ VDL+ LY R KQ +P + P
Sbjct: 575 FRTVGDKVP-DLNKLTGQT-WEKTKTKVRKAVKKLAVDLLNLYAKRAKQTGYAFPPDMPW 632
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVALRAIF V+A
Sbjct: 633 QQELEDSFPYQPTPDQLKATQDVKRDM-EGDRPMDRLVCGDVGFGKTEVALRAIFKAVTA 691
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ +SERFS YP I+VGLL+RF+++ E+ E + G L++I
Sbjct: 692 GKQVALLAPTTILTQQHYHTLSERFSPYP-IEVGLLNRFRTETERREIHKRLATGELDVI 750
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGT ++L + + +LGLLVVDEEQRFGVKQKE I + K VDVLTL+ATPIPRTLY++L
Sbjct: 751 VGTQAVLSKAIKFRDLGLLVVDEEQRFGVKQKEAIKALKTEVDVLTLTATPIPRTLYMSL 810
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLISTPPP R PI+THL+ ++ E V SAI+ ELDRGGQVFYV+PRI+G++E
Sbjct: 811 SGIREMSLISTPPPSRRPIQTHLAPYNPETVRSAIRQELDRGGQVFYVVPRIEGIDELAV 870
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ+ P IAIAHGQ + +LE M F+ IL+CT I+ESGLDI NTI+++D
Sbjct: 871 QLQEMVPSARIAIAHGQMEASELESIMLTFSAAEFDILVCTTIIESGLDIPRVNTILIED 930
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q+FGL QLYQLRGRVGRA +AHA+LFYP ++ LSD A +RL A++E +LG G+QLA
Sbjct: 931 AQKFGLGQLYQLRGRVGRAGIQAHAWLFYPKQNQLSDAARQRLRAIQEFAQLGSGYQLAV 990
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V + QID+ +
Sbjct: 991 RDMEIRGSGDVLGTEQSGQMEAIGFDLYAEMLEEAIREIKGQEIPKV--EDAQIDLTLTA 1048
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI L+ M A + L Q +YG P + L++ + +++
Sbjct: 1049 FIPADYIADLDQKMSAYRSVASANTPE--ELQQIQADWCDRYGSIPLPAQQLIRVVELKQ 1106
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A IG ++I K + ++T M + + ++ ++ + R+ + ++ + L
Sbjct: 1107 IAKKIGFSRIKPENKQHIVLETAMEEPAWNLLKANLPEHL-RSRFVYSKGKVTIRGMAVL 1165
Query: 618 PREQLLNWIFQCLAELYASLP 638
++ L+ + L ++ +LP
Sbjct: 1166 TAQKQLDNLIDWLGKMQGALP 1186
>gi|119484480|ref|ZP_01619097.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106]
gi|119457954|gb|EAW39077.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106]
Length = 1147
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 275/587 (46%), Positives = 390/587 (66%), Gaps = 16/587 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPA 78
FR K P+ L+KLS + WE+ K K + AI+K+ VDL++LY R +Q YP P
Sbjct: 520 FRSTGAKVPQ-LNKLSGKS-WEKTKNKVQKAIKKLAVDLLKLYAQRAQQTGYNYPIDTPW 577
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ K+ DV+RD+ E E PMDRL+CGDVGFGKTEV +RAIF V+A
Sbjct: 578 QQELEDSFPYQPTPDQLKSTQDVKRDM-EAERPMDRLVCGDVGFGKTEVGIRAIFKAVTA 636
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ LAPT +L +QH+ + ERF+ YP I++ LL+RF++ +EK E + G ++II
Sbjct: 637 GKQVAFLAPTTILTQQHYHTLKERFAPYP-IEIALLNRFRTTSEKREIQQRLTTGEIDII 695
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTHS+L + + +LGLLVVDEEQRFGV QKEKI + K VDVLTL+ATPIPRTLY+AL
Sbjct: 696 VGTHSILSKTIQFKDLGLLVVDEEQRFGVNQKEKIKTLKTHVDVLTLTATPIPRTLYMAL 755
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHLS ++ E + +AI+ ELDRGGQVFYV+PRI+G+EE
Sbjct: 756 SGIREMSLITTPPPSRRPIKTHLSPYNDETIRTAIRQELDRGGQVFYVVPRIEGIEEKSS 815
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+++ P IA+AHGQ + +LE M F G +IL+CT I+ESGLDI NTI+++D
Sbjct: 816 KIREMVPSARIAVAHGQMNAAELESIMLTFNAGEAEILVCTTIIESGLDIPRVNTILIED 875
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYP----DKSLLSDQALERLAALEECRELGQGF 434
+FGLAQLYQLRGRVGR+ +AHA+LFYP ++ LSD A +RL A++E +LG G+
Sbjct: 876 AHRFGLAQLYQLRGRVGRSGVQAHAWLFYPVNADGRAALSDDARKRLRAIQEFTQLGSGY 935
Query: 435 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 494
QLA +D+ IRG G I G +Q+G + +G DL+ EML ES+ ++ + V QID+
Sbjct: 936 QLAMRDLEIRGAGDILGAEQSGQMDVIGFDLYTEMLEESIREIKGQEIPQV--DDTQIDL 993
Query: 495 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
N+ +PS+YI ++ M E + +D L + E +YG P + L++ +
Sbjct: 994 NLTAFIPSDYIPDIDQKMSAYREVASCSSRD--ELARLEEDWCDRYGPIPTPAQQLIRVM 1051
Query: 555 YVRRMAADIGITKI---YASGKMVGMKTNMNKKVFKMMIDSMTSEVH 598
++++A +G ++I S + + ++T M + + ++ + + S +H
Sbjct: 1052 ELKQIAKKLGFSRIKPDTESKQHILLETPMEEPAWNLLKEKLPSHLH 1098
>gi|390439008|ref|ZP_10227431.1| Transcription-repair-coupling factor [Microcystis sp. T1-4]
gi|389837572|emb|CCI31555.1| Transcription-repair-coupling factor [Microcystis sp. T1-4]
Length = 1160
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 279/598 (46%), Positives = 395/598 (66%), Gaps = 14/598 (2%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQFPYEPTPDQKKA 97
AWE K + + +I+K+ VDL+ +Y R K+ YP NP E FPY+PT DQ KA
Sbjct: 562 AWEATKARVRKSIKKLAVDLINIYAQRAKKSGFAYPMDNPWQRELEDSFPYQPTADQLKA 621
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHF 156
DV+RDL E + PMDRL+CGDVGFGKTEVA+RAIF V+ G KQ +LAPT +L +QH+
Sbjct: 622 IQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTTGHKQVALLAPTTILTQQHY 680
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF+ YP I VGLL+RF++ +EK++ + +K G L+I+VGT LL V + +LGL
Sbjct: 681 HTLKERFAPYP-INVGLLNRFRTNSEKKDIVQRLKTGELDIVVGTQLLLSKAVEFKDLGL 739
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV QKEKI +FK ++DVLTLSATPIPRTLY++L+G R+ SLI+TPPP R P
Sbjct: 740 LVIDEEQRFGVNQKEKIKAFKSNIDVLTLSATPIPRTLYMSLSGVREMSLITTPPPSRRP 799
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+THLS+++ + + +AI+ ELDRGGQVFYVLPRI+G+EE +Q PG IAI HG+
Sbjct: 800 IQTHLSSYNSDVIRTAIRNELDRGGQVFYVLPRIEGIEEKAAAIQGMIPGARIAIGHGRM 859
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE TM F G IL+CT IVESGLDI NTII++D Q+FGLAQLYQLRGRVGR
Sbjct: 860 DESELETTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIEDAQKFGLAQLYQLRGRVGR 919
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ +AHA+L YP K+ L++ A ERL A++E +LG G+QLA +D+ IRG G + G +Q+G
Sbjct: 920 SGVQAHAWLLYPAKAELTETARERLKAIQEFTQLGSGYQLATRDLEIRGAGNLLGAEQSG 979
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +G DL+ EML E+L ++ + V + QID+ + +P++YI+ E M++
Sbjct: 980 QMEAIGFDLYMEMLQEALQEIQGQEIPQV--EDTQIDLKLTAFIPNDYISDPEQKMDVYR 1037
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM-V 575
A Q L Q L +YG P + L K + ++ +A +G ++I GK +
Sbjct: 1038 AIATANSQK--NLGQIAADLVDRYGGIPSPVAQLFKVIELKHLAKSLGFSRIKPDGKQHI 1095
Query: 576 GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAE-LLLELPREQ---LLNWIFQC 629
++T M + +K++ + + + ++ + Q+ L L P +Q LL+W+ +C
Sbjct: 1096 ILETPMEEPAWKLLQEHLPQHI-QSRFVYSPKQVTVRGLGLVKPPQQLDSLLDWLAKC 1152
>gi|186685547|ref|YP_001868743.1| transcription-repair coupling factor [Nostoc punctiforme PCC 73102]
gi|186467999|gb|ACC83800.1| transcription-repair coupling factor [Nostoc punctiforme PCC 73102]
Length = 1170
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 274/572 (47%), Positives = 378/572 (66%), Gaps = 10/572 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR K P L++++ AWE K K + AI+K+ VDL++LY R +Q+ +P + P
Sbjct: 554 FRAGGDKAPE-LNRMTGK-AWENTKNKVRKAIKKLAVDLLKLYAARSQQQGFSFPSDMPW 611
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PT DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RA+F V+A
Sbjct: 612 QEELEDSFPYQPTTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAVFKAVTA 670
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERF+ YP + VGLL+RF+S E+ + + G L+++
Sbjct: 671 GKQVALLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRSAEERRDIQKRLATGELDVV 729
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGT LLG V++ +LGLLVVDEEQRFGV QKEKI S K VDVLTLSATPIPRTLY++L
Sbjct: 730 VGTQQLLGKGVMFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSL 789
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R IKTHLS + E + SAI+ ELDRGGQVFYV+PR+ G+EE
Sbjct: 790 SGIREMSLITTPPPTRRAIKTHLSPINSESIRSAIRQELDRGGQVFYVVPRVDGIEETTA 849
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ PG AIAHGQ +LE TM F+ G IL+CT I+ESGLDI NTI+++D
Sbjct: 850 NLREVIPGARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILIED 909
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGLAQLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG G+QLA
Sbjct: 910 AHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQRQLSDAARQRLRAIQEFTQLGSGYQLAM 969
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V + QID+N+
Sbjct: 970 RDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPKV--EDTQIDLNLTA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI L+ M A + L Q +YG P S LL+ + +++
Sbjct: 1028 FIPADYITDLDQKMSAYRAVATAKSKS--ELNQIAAEWSDRYGTLPVSANQLLRVMELKQ 1085
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMM 589
+A +G ++I K V ++T M + + ++
Sbjct: 1086 LAKKLGFSRIKPEQKQHVVLETPMEEPAWNLL 1117
>gi|334120261|ref|ZP_08494343.1| transcription-repair coupling factor [Microcoleus vaginatus FGP-2]
gi|333457049|gb|EGK85676.1| transcription-repair coupling factor [Microcoleus vaginatus FGP-2]
Length = 1191
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 282/621 (45%), Positives = 404/621 (65%), Gaps = 11/621 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR K P L+KL+ T WE+ KTK + A++K+ VDL+ LY R KQ +P + P
Sbjct: 574 FRTVGDKVP-DLNKLTGQT-WEKTKTKVRKAVKKLAVDLLNLYAKRAKQTGYAFPPDMPW 631
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVALRAIF V+A
Sbjct: 632 QQELEDSFPYQPTPDQLKATQDVKRDM-EGDRPMDRLVCGDVGFGKTEVALRAIFKAVTA 690
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ +SERFS YP I+VGLL+RF+++ E+ E + G L++I
Sbjct: 691 GKQVALLAPTTILTQQHYHTLSERFSPYP-IEVGLLNRFRTETERREIHKRLATGELDVI 749
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGT ++L + + +LGLLVVDEEQRFGVKQKE I + K VDVLTL+ATPIPRTLY++L
Sbjct: 750 VGTQAVLSKAIKFRDLGLLVVDEEQRFGVKQKEAIKALKTEVDVLTLTATPIPRTLYMSL 809
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLISTPPP R PI+THL+ ++ E V SAI+ ELDRGGQVFYV+PRI+G++E
Sbjct: 810 SGIREMSLISTPPPSRRPIQTHLAPYNPEVVRSAIRQELDRGGQVFYVVPRIEGIDELAA 869
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ+ P IAIAHGQ + +LE M F+ IL+CT I+ESGLDI NTI+++D
Sbjct: 870 QLQEMVPSARIAIAHGQMDASELESVMLTFSAADFDILVCTTIIESGLDIPRVNTILIED 929
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q+FGL QLYQLRGRVGRA +AHA+LFYP ++ LSD A +RL A++E +LG G+QLA
Sbjct: 930 AQRFGLGQLYQLRGRVGRAGIQAHAWLFYPKQNKLSDAARQRLRAIQEFAQLGSGYQLAV 989
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V + QID+ +
Sbjct: 990 RDMEIRGSGDVLGTEQSGQMEAIGFDLYAEMLEEAIREIKGQEIPKV--EDAQIDLTLTA 1047
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI L+ M A + L Q +YG P + L++ + +++
Sbjct: 1048 FIPADYIADLDQKMSAYRSVASANTPE--ELQQIQADWCDRYGPIPLPAQQLIRVVELKQ 1105
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A IG ++I K + ++T M + + ++ ++ + R+ + ++ + L
Sbjct: 1106 IAKKIGFSRIKPENKQHIVLETAMEEPAWNLLKANLPEHL-RSRFVYSKGKVTIRGMAVL 1164
Query: 618 PREQLLNWIFQCLAELYASLP 638
++ L+ + L ++ +LP
Sbjct: 1165 TAQKQLDNLIDWLGKMQGALP 1185
>gi|422305058|ref|ZP_16392395.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9806]
gi|389789731|emb|CCI14344.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9806]
Length = 1169
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 275/603 (45%), Positives = 396/603 (65%), Gaps = 10/603 (1%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQFPYEPTPDQKKA 97
AWE K + + +++K+ VDL+ +Y R ++ YP NP E FPY+PT DQ KA
Sbjct: 571 AWEATKARVRKSVKKLAVDLINIYAQRAQKSGFAYPVDNPWQRELEDSFPYQPTADQLKA 630
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHF 156
DV+RDL E + PMDRL+CGDVGFGKTEVA+RAIF V+ G KQ +LAPT +L +QH+
Sbjct: 631 IQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTTGHKQVALLAPTTILTQQHY 689
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF+ YP I VGLL+RF++ +EK++ + +K G L+I+VGT LL V + +LGL
Sbjct: 690 HTLKERFAPYP-INVGLLNRFRTNSEKKDIVQRLKTGELDIVVGTQLLLSKAVEFKDLGL 748
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV QKEKI +FK ++DVLTLSATPIPRTLY++L+G R+ SLI+TPPP R P
Sbjct: 749 LVIDEEQRFGVNQKEKIKAFKSNIDVLTLSATPIPRTLYMSLSGVREMSLITTPPPSRRP 808
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+THLS+++ + + +AI+ ELDRGGQ+FYV+PRI+G+EE +Q PG IAI HG+
Sbjct: 809 IQTHLSSYNSDAIRTAIRNELDRGGQIFYVVPRIEGIEEKAAAIQGMIPGARIAIGHGRM 868
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE TM F G IL+CT IVESGLDI NTII++D Q+FGLAQLYQLRGRVGR
Sbjct: 869 DESELETTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIEDAQKFGLAQLYQLRGRVGR 928
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ +AHA+L YP K+ L++ A ERL A++E +LG G+QLA +D+ IRG G + G +Q+G
Sbjct: 929 SGVQAHAWLLYPAKAELTETARERLKAIQEFTQLGSGYQLATRDLEIRGAGNLLGAEQSG 988
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +G DL+ EML E+L ++ + V + QID+ + +P++YI+ LE M++
Sbjct: 989 QMEAIGFDLYMEMLQEALREIQGQEIPQV--EDTQIDLKLTAFIPNDYISDLEQKMDVYR 1046
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM-V 575
A Q L Q L +YG P + L K + ++ +A +G ++I GK +
Sbjct: 1047 AIATANSQK--NLGQIAADLVDRYGAIPAPVAQLFKVIELKHLAKSLGFSRIKPDGKQHI 1104
Query: 576 GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYA 635
++T M + +K++ + + + ++ + Q+ L + Q L+ + + LA+
Sbjct: 1105 ILETPMEEPAWKLLQEHLPQHI-QSRFVYSPKQVTVRGLGTVKPPQQLDSLLEWLAKCKD 1163
Query: 636 SLP 638
LP
Sbjct: 1164 GLP 1166
>gi|414077448|ref|YP_006996766.1| transcription-repair coupling factor [Anabaena sp. 90]
gi|413970864|gb|AFW94953.1| transcription-repair coupling factor [Anabaena sp. 90]
Length = 1171
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 276/577 (47%), Positives = 380/577 (65%), Gaps = 10/577 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR + P L K+S AWE K+K + AI+K+ VDL++LY R +Q+ YP + P
Sbjct: 557 FRTGGDQAPE-LHKMSGK-AWENTKSKVRKAIKKLAVDLLKLYAARSQQQGFSYPHDMPW 614
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PT DQ KA DV+RD+ E E PMDRL+CGDVGFGKTEVA+RAIF V+A
Sbjct: 615 QEEMEDSFPYQPTTDQLKAVQDVKRDM-ESERPMDRLVCGDVGFGKTEVAIRAIFKAVTA 673
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF+S EK + G L+I+
Sbjct: 674 GKQVALLAPTTILTQQHYHTIKERFAPYP-INVGLLNRFRSAEEKRNIQKRLATGELDIV 732
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V + +LGLLV+DEEQRFGV QKEKI S K VDVLTLSATPIPRTLY++L
Sbjct: 733 VGTHQLLGKSVQFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSL 792
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PI+THLS + + + SAI+ ELDRGGQVFYV+PR+ G+EE
Sbjct: 793 SGIREMSLITTPPPTRRPIQTHLSPLNSDVIRSAIRQELDRGGQVFYVVPRVDGIEETTT 852
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ PG AIAHGQ +LE TM F IL+CT I+ESGLDI NTI+++D
Sbjct: 853 KLREMVPGGRFAIAHGQMDESELESTMLTFGNNDADILVCTTIIESGLDIPRVNTILIED 912
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG G+QLA
Sbjct: 913 AHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGSGYQLAM 972
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V + Q+D+N+
Sbjct: 973 RDMEIRGVGNLLGAEQSGQMDVIGFDLYMEMLEEAIREIRGQEIPKV--EDTQVDLNLTA 1030
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P+ YI L+ M A + + L Q +YG P LL+ + +++
Sbjct: 1031 FIPATYIPDLDQKMSAYRAV--ATVKSKYELKQIAAEWTDRYGTIPVPASQLLRVMELKQ 1088
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMT 594
+A ++G ++I K + ++T M + + ++ +++T
Sbjct: 1089 LAKNLGFSRIKPENKQHIVLETPMEEPAWNLLAENLT 1125
>gi|425468299|ref|ZP_18847328.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9701]
gi|389885028|emb|CCI34709.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9701]
Length = 1160
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 275/603 (45%), Positives = 396/603 (65%), Gaps = 10/603 (1%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQFPYEPTPDQKKA 97
AWE K + + +++K+ VDL+ +Y R ++ YP NP E FPY+PT DQ KA
Sbjct: 562 AWEATKARVRKSVKKLAVDLINIYAQRSQKSGFAYPMDNPWQRELEDSFPYQPTADQLKA 621
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHF 156
DV+RDL E + PMDRL+CGDVGFGKTEVA+RAIF V+ G KQ +LAPT +L +QH+
Sbjct: 622 IQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTTGHKQVALLAPTTILTQQHY 680
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF+ YP I VGLL+RF++ +EK++ + +K G L+I+VGT LL V + +LGL
Sbjct: 681 HTLKERFAPYP-INVGLLNRFRTNSEKKDIVQRLKTGELDIVVGTQLLLSKAVEFKDLGL 739
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV QKEKI +FK ++DVLTLSATPIPRTLY++L+G R+ SLI+TPPP R P
Sbjct: 740 LVIDEEQRFGVNQKEKIKAFKSNIDVLTLSATPIPRTLYMSLSGVREMSLITTPPPSRRP 799
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+THLS+++ + + +AI+ ELDRGGQ+FYV+PRI+G+EE +Q PG IAI HG+
Sbjct: 800 IQTHLSSYNSDVIRTAIRNELDRGGQIFYVVPRIEGIEEKAAAIQGMIPGARIAIGHGRM 859
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE TM F G IL+CT IVESGLDI NTII++D Q+FGLAQLYQLRGRVGR
Sbjct: 860 DESELETTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIEDAQKFGLAQLYQLRGRVGR 919
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ +AHA+L YP K+ L++ A ERL A++E +LG G+QLA +D+ IRG G + G +Q+G
Sbjct: 920 SGVQAHAWLLYPAKAELTETARERLKAIQEFTQLGSGYQLATRDLEIRGAGNLLGAEQSG 979
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +G DL+ EML E+L ++ + V + QID+ + +P++YI+ LE M++
Sbjct: 980 QMEAIGFDLYMEMLQEALREIQGQEIPQV--EDTQIDLKLTAFIPNDYISDLEQKMDVYR 1037
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM-V 575
A Q L Q L +YG P + L K + ++ +A +G ++I GK +
Sbjct: 1038 AIATANSQK--ALGQIAADLVDRYGAIPAPVAQLFKVIELKHLAKSLGFSRIKPDGKQHI 1095
Query: 576 GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYA 635
++T M + +K++ + + + ++ + Q+ L + Q L+ + + LA+
Sbjct: 1096 ILETPMEEPAWKLLQEHLPQHI-QSRFVYSPKQVTVRGLGTVKPPQQLDSLLEWLAKCKD 1154
Query: 636 SLP 638
LP
Sbjct: 1155 GLP 1157
>gi|427721233|ref|YP_007069227.1| transcription-repair coupling factor [Calothrix sp. PCC 7507]
gi|427353669|gb|AFY36393.1| transcription-repair coupling factor [Calothrix sp. PCC 7507]
Length = 1155
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 276/624 (44%), Positives = 396/624 (63%), Gaps = 11/624 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR K P L K++ AWE K K + AI+K+ DL++LY R +Q+ YP++ P
Sbjct: 539 FRATGDKAPE-LHKMTGK-AWENTKNKVRKAIKKLAFDLLKLYAARSQQQGFTYPQDMPW 596
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PT DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF V+A
Sbjct: 597 QEEMEDSFPYQPTTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTA 655
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERF+ YP + VGLL+RF++ E+ + + G L+++
Sbjct: 656 GKQVALLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRTAEERRDIQKRLATGELDVV 714
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V + +LGLLVVDEEQRFGV QKEKI S K +DVLTLSATPIPRTLY++L
Sbjct: 715 VGTHQLLGKGVTFRDLGLLVVDEEQRFGVNQKEKIKSLKTQLDVLTLSATPIPRTLYMSL 774
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL+ + E + +AI+ ELDRGGQVFYV+PR++G+EE
Sbjct: 775 SGIREMSLITTPPPSRRPIKTHLAQMNPESIRTAIRQELDRGGQVFYVVPRVEGIEETTT 834
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ P A+AHGQ QLE TM F G IL+CT I+ESGLDI NTI+++D
Sbjct: 835 KLRETIPSARFAVAHGQMDEGQLESTMLTFNNGDADILVCTTIIESGLDIPRVNTILIED 894
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG G+QLA
Sbjct: 895 AHRFGLSQLYQLRGRVGRAGIQAHAWLFYPQQRALSDAARQRLRAIQEFTQLGSGYQLAM 954
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML ES+ ++ + V QID+N+
Sbjct: 955 RDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEESIREIRGQEIPQV--SDTQIDLNLTA 1012
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI L+ M A ++ L Q +YG P LL+ + +++
Sbjct: 1013 FIPADYILDLDQKMSAYRAVAAAKSKE--ELTQIGVDWSDRYGAIPVPASQLLRVMELKQ 1070
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A +G ++I K + ++T M + + ++ ++ + R+ + ++ L +
Sbjct: 1071 LAKKLGFSRIKPENKQHIILETPMEEPAWNLLAANLPENL-RSRFVYSPGKVTVRGLAVM 1129
Query: 618 PREQLLNWIFQCLAELYASLPALI 641
++ L + ++ +LP +
Sbjct: 1130 KADKQLQSLIDAFGKMQGALPEAV 1153
>gi|427731824|ref|YP_007078061.1| transcription-repair coupling factor Mfd [Nostoc sp. PCC 7524]
gi|427367743|gb|AFY50464.1| transcription-repair coupling factor Mfd [Nostoc sp. PCC 7524]
Length = 1195
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 274/620 (44%), Positives = 397/620 (64%), Gaps = 11/620 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR K P L K++ AWE K + + AI+K+ VDL++LY R +Q+ YP++ P
Sbjct: 579 FRSTGDKAPE-LHKMTGK-AWENTKNRVRKAIKKLAVDLLKLYAKRSQQEGYAYPQDMPW 636
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PT DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF V++
Sbjct: 637 QEEMEDSFPYQPTTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTS 695
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERF+ YP + VGLL+RF++ E+ + + G L+I+
Sbjct: 696 GKQVALLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRTAEERRDIQKRLATGELDIV 754
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH +LG V + +LGLLV+DEEQRFGV QKEKI + K +DVLTLSATPIPRTLY++L
Sbjct: 755 VGTHQILGKGVNFKDLGLLVIDEEQRFGVNQKEKIKTLKTQIDVLTLSATPIPRTLYMSL 814
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PI+THLS + E + SAI+ ELDRGGQVFYV+PR++G+EE
Sbjct: 815 SGIREMSLITTPPPTRRPIQTHLSPMNPESIRSAIRQELDRGGQVFYVVPRVEGIEETTS 874
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ PG AIAHGQ +LE TM F+ G IL+CT I+ESGLDI NTI+++D
Sbjct: 875 KLREMIPGGRFAIAHGQMDESELESTMLTFSNGEADILVCTTIIESGLDIPRVNTILIED 934
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG G+QLA
Sbjct: 935 AHKFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRALSDAARQRLRAIQEFTQLGSGYQLAM 994
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML ES+ ++ + V QID+N+
Sbjct: 995 RDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEESIREIRGQEIPKV--DDTQIDLNLTA 1052
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI ++ M A ++ L Q +YG P LL+ + +++
Sbjct: 1053 FIPADYIPDIDQKMSAYRAVAAAKSKE--ELTQIAAEWSDRYGNLPVPANQLLRVMELKQ 1110
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A +G ++I K V ++T M + + ++ ++ + + + ++ L L
Sbjct: 1111 LAKQLGFSRIKPENKQHVVLETPMEEPAWNLLAANLPEHL-KTRFVYSPGKVTVRGLAVL 1169
Query: 618 PREQLLNWIFQCLAELYASL 637
+Q L + + ++ ++
Sbjct: 1170 KADQQLQSLIDAMTKMQGAI 1189
>gi|354564629|ref|ZP_08983805.1| transcription-repair coupling factor [Fischerella sp. JSC-11]
gi|353549755|gb|EHC19194.1| transcription-repair coupling factor [Fischerella sp. JSC-11]
Length = 1188
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 273/576 (47%), Positives = 382/576 (66%), Gaps = 10/576 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR K P L+K++ AWE K K + AI+K+ VDL++LY R +QK +P + P
Sbjct: 572 FRTTSDKPPE-LNKMTGK-AWENTKNKVRKAIKKLAVDLLKLYAARSQQKGFAFPADMPW 629
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PT DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF V+A
Sbjct: 630 QQELEDSFPYQPTTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTA 688
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERF+ YP I +GLL+RF+S E+ + + G L+++
Sbjct: 689 GKQVALLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRSPQERRDIQKRLTTGELDVV 747
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL V + +LG+LVVDEEQRFGV QKEKI + K VDVLTLSATPIPRTLY++L
Sbjct: 748 VGTHQLLSKDVNFKDLGMLVVDEEQRFGVNQKEKIKTLKTQVDVLTLSATPIPRTLYMSL 807
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL+ + E V SAI+ ELDRGGQVFYV+PR++G+E+ +
Sbjct: 808 SGIREMSLITTPPPSRRPIKTHLAPMNPETVRSAIRQELDRGGQVFYVVPRVEGIEKRTE 867
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L+Q PG IAIAHGQ + +LE M F+ IL+CT I+ESGLDI NTI+++D
Sbjct: 868 ELRQMIPGARIAIAHGQMEAGELESIMLSFSSAEADILVCTTIIESGLDIPRVNTILIED 927
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGLAQLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG G+QLA
Sbjct: 928 AHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQRTLSDAARQRLRAIQEFTQLGSGYQLAV 987
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V + QID+N+
Sbjct: 988 RDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEEAIREIRGQEIPKV--EDTQIDLNLTA 1045
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI ++ M A ++ L Q +YG P LL+ + +++
Sbjct: 1046 FVPADYIPDIDQKMSAYRAVAAAKSKE--ELTQIAAEWSDRYGTIPKPASQLLRVMELKQ 1103
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSM 593
+A +G ++I K V ++T M + + ++ ++
Sbjct: 1104 LAKKLGFSRIKPEAKQHVVLETPMEEPAWNLLAGNL 1139
>gi|428772136|ref|YP_007163924.1| transcription-repair coupling factor [Cyanobacterium stanieri PCC
7202]
gi|428686415|gb|AFZ46275.1| transcription-repair coupling factor [Cyanobacterium stanieri PCC
7202]
Length = 1151
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 285/618 (46%), Positives = 407/618 (65%), Gaps = 17/618 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
+R + K P+ + KL+ W K K + +I+K+ VDL++LY R K YP++ P
Sbjct: 542 YRAIDGKHPK-IHKLAGK-EWNNIKNKARRSIKKLAVDLVKLYATRAKLTGFVYPEDSPW 599
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPYEPTPDQ KA DV+ DL E + PMDRLICGDVGFGKTEVA+R IF V++A
Sbjct: 600 QRELEDSFPYEPTPDQLKATQDVKIDL-ESDRPMDRLICGDVGFGKTEVAIRTIFKVITA 658
Query: 139 G-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 197
G KQ LAPT +L++QH+ + ERFS YP I +GLL+RF+S +E++E + + G L+I
Sbjct: 659 GHKQVAFLAPTTILSQQHYHTLLERFSPYP-INIGLLNRFRSPSERKEIIQKLATGELDI 717
Query: 198 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 257
+VGTH LL + Y +LGLLV+DEEQRFGV QKEKI + K SVDVLTLSATPIPRTLY++
Sbjct: 718 VVGTHQLLSKTIKYKDLGLLVIDEEQRFGVNQKEKIKAMKTSVDVLTLSATPIPRTLYMS 777
Query: 258 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
++G R+ SLI+TPPP R PIKTH+ AF++ + +AI+ ELDRGGQ+FYVLPRI+G+++ +
Sbjct: 778 ISGVREMSLITTPPPSRRPIKTHIGAFNEGIIRTAIRNELDRGGQIFYVLPRIEGMDKVV 837
Query: 318 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 377
+ LQ P + I +AHGQ +LE TM F+ G +LICT I+ESGLDI NTIIV+
Sbjct: 838 EMLQNMIPSLRIGVAHGQMPEGELESTMLGFSNGDADLLICTTIIESGLDIPRVNTIIVE 897
Query: 378 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 437
D Q+FGLAQLYQLRGRVGR+ +AHA+L YPD LS++A +RL AL+E +LG G+ LA
Sbjct: 898 DAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPDDVSLSEKARKRLRALQEFSQLGSGYHLA 957
Query: 438 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 497
+DM IRG G++ G +Q+G + +G +++ EML E++ ++ + +V + QID+N+
Sbjct: 958 MRDMEIRGVGSLLGAEQSGQMEAIGFEMYTEMLKEAIDEIQGQEIPTV--EDTQIDLNLT 1015
Query: 498 PRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
+P+ YI +E M+ A + E+D+ Q +YG+ P + LL+ +
Sbjct: 1016 AFIPNRYIADMEQKMDAYRAVATVSCERDV---KQIERDWLDRYGEIPEPAKQLLQVADL 1072
Query: 557 RRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLL 615
+ A IG ++I GK + ++T M + + ++++ + S +H + + I L
Sbjct: 1073 KYKAKSIGFSRIKPEGKQNIILETPMLEPAWNLLLEKLPSHLHSRFVYAKKKVIVRGLGA 1132
Query: 616 ELPREQ---LLNWIFQCL 630
P +Q L+NW F CL
Sbjct: 1133 MKPTQQLETLINW-FACL 1149
>gi|257062106|ref|YP_003139994.1| transcription-repair coupling factor [Cyanothece sp. PCC 8802]
gi|256592272|gb|ACV03159.1| transcription-repair coupling factor [Cyanothece sp. PCC 8802]
Length = 1158
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 276/603 (45%), Positives = 402/603 (66%), Gaps = 12/603 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAF 98
WE+ K + + +I+K+ VDL+ LY R K++ YP + P E FPY+PTPDQ KA
Sbjct: 558 WEKTKQRVRKSIKKLAVDLLNLYAKRAKKEGFIYPPDTPWQEELEDSFPYQPTPDQLKAV 617
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHFD 157
DV+ DL E + PMDRL+CGDVGFGKTEVA+RAIF V++G KQ +LAPT +L +QH+
Sbjct: 618 QDVKMDL-ESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGHKQVALLAPTTILTQQHYH 676
Query: 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217
+ ERF+ YP I +GLL+RF++ +EK++ + + G L+I+VGTH LLG V + NLGLL
Sbjct: 677 TLKERFAPYP-INIGLLNRFRTTSEKKDIVQRLATGELDIVVGTHQLLGQSVKFKNLGLL 735
Query: 218 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 277
V+DEEQRFGV QKEKI + K VDVLTL+ATPIPRTLY++L+G R+ SLI+TPPP R PI
Sbjct: 736 VIDEEQRFGVNQKEKIKALKTEVDVLTLTATPIPRTLYMSLSGIREISLITTPPPSRRPI 795
Query: 278 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 337
KTHLS+++ + V +AI+ ELDRGGQ+FYV+PR++G+EE +QQ P I IAHGQ
Sbjct: 796 KTHLSSYNPDVVRTAIRNELDRGGQIFYVVPRVEGIEEVAGQIQQMVPSARIVIAHGQMD 855
Query: 338 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 397
LE TM F G IL+CT I+ESGLDI NTIIV+D Q+FGL+QLYQLRGRVGR+
Sbjct: 856 VNDLEMTMLGFNNGEADILVCTTIIESGLDIPRVNTIIVEDAQKFGLSQLYQLRGRVGRS 915
Query: 398 DKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 457
+AHA+L YP+K LS+ A +RL AL+E +LG G+QLA +DM IRG G + G +Q+G
Sbjct: 916 GIQAHAWLLYPNKGQLSETARQRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSGQ 975
Query: 458 VGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE 517
+ +G +L+ EML E++ ++ + V +QID+ + +PS+YI L+ M+
Sbjct: 976 MMAIGFELYMEMLQEAIKEIQGQEIPKV--DEIQIDLQLTAFIPSDYIPDLQQKMDAYRR 1033
Query: 518 AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM-VG 576
A ++ L + + +YG P + LL+ + ++++ +G ++I GK V
Sbjct: 1034 IAMANSKE--QLEEIVKDWTDRYGTIPSPVRQLLQVIELKQIGKSLGFSRIKVEGKQNVV 1091
Query: 577 MKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAE-LLLELPREQLLNWIFQCLAELYA 635
++T M + +K++ +++ + + R+ + ++ L + P++QL N I + L ++
Sbjct: 1092 LETPMEEPAWKLLQENLPNHL-RSRFVYSPKKVTVRGLGIVKPQQQLENLI-EWLGKMKG 1149
Query: 636 SLP 638
+LP
Sbjct: 1150 ALP 1152
>gi|425466963|ref|ZP_18846257.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9809]
gi|389830370|emb|CCI27727.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9809]
Length = 1160
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 280/617 (45%), Positives = 404/617 (65%), Gaps = 16/617 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPA 78
+R ++ P L K+S AWE K + + +++K+ VDL+ +Y R ++ YP NP
Sbjct: 545 YRHTGSQAPE-LHKISGK-AWEATKARVRKSVKKLAVDLINIYAQRAQKSGFAYPMDNPW 602
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PT DQ KA DV+RDL E + PMDRL+CGDVGFGKTEVA+RAIF V+
Sbjct: 603 QRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTT 661
Query: 139 G-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 197
G KQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF++ +EK++ + +K G L+I
Sbjct: 662 GHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDIVQRLKTGELDI 720
Query: 198 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 257
+VGT LL V + +LGLLV+DEEQRFGV QKEKI +FK ++DVLTLSATPIPRTLY++
Sbjct: 721 VVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLSATPIPRTLYMS 780
Query: 258 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
L+G R+ SLI+TPPP R PI+THLS+++ + + +AI+ ELDRGGQ+FYV+PRI+G+EE
Sbjct: 781 LSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYVVPRIEGIEEKA 840
Query: 318 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 377
+Q PG I+I HG+ +LE TM F G IL+CT IVESGLDI NTII++
Sbjct: 841 AAIQGMIPGARISIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIE 900
Query: 378 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 437
D Q+FGLAQLYQLRGRVGR+ +AHA+L YP K+ L++ A ERL A++E +LG G+QLA
Sbjct: 901 DAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQEFTQLGSGYQLA 960
Query: 438 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 497
+D+ IRG G + G +Q+G + +G DL+ EML E+L ++ + V + QID+ +
Sbjct: 961 TRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV--EDTQIDLKLT 1018
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+P++YI+ LE M++ A Q L Q L +YG P + L K + ++
Sbjct: 1019 AFIPNDYISDLEQKMDVYRAIATANSQK--NLGQIAADLVDRYGAIPSPVAQLFKVIELK 1076
Query: 558 RMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAE-LLL 615
+A +G ++I GK + ++T M + +K++ + + + ++ + Q+ L L
Sbjct: 1077 HLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI-QSRFVYSPKQVTVRGLGL 1135
Query: 616 ELPREQ---LLNWIFQC 629
P +Q LL W+ +C
Sbjct: 1136 VKPSQQLDSLLEWLAKC 1152
>gi|425446178|ref|ZP_18826189.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9443]
gi|389733706|emb|CCI02565.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9443]
Length = 1160
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 280/622 (45%), Positives = 403/622 (64%), Gaps = 12/622 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPA 78
+R ++ P L K+S AWE K + + +++K+ VDL+ +Y R ++ YP NP
Sbjct: 545 YRHTGSQEPE-LHKISGK-AWEATKARVRKSVKKLAVDLINIYAQRAQKSGFAYPMDNPW 602
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PT DQ KA DV+RDL E + PMDRL+CGDVGFGKTEVA+RAIF V+
Sbjct: 603 QRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTT 661
Query: 139 G-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 197
G KQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF++ +EK++ + +K G L+I
Sbjct: 662 GHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDIVQRLKTGELDI 720
Query: 198 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 257
+VGT LL V + +LGLLV+DEEQRFGV QKEKI +FK ++DVLTLSATPIPRTLY++
Sbjct: 721 VVGTQLLLSKAVEFRDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLSATPIPRTLYMS 780
Query: 258 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
L+G R+ SLI+TPPP R PI+THLS+++ + + +AI+ ELDRGGQ+FYV+PRI+G+EE
Sbjct: 781 LSGVREMSLITTPPPSRRPIQTHLSSYNSDAIRTAIRNELDRGGQIFYVVPRIEGIEEKA 840
Query: 318 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 377
+Q PG IAI HG+ +LE TM F G IL+CT IVESGLDI NTII++
Sbjct: 841 AAIQGMIPGARIAIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIE 900
Query: 378 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 437
D Q+FGLAQLYQLRGRVGR+ +AHA+L YP K L++ A ERL A++E +LG G+QLA
Sbjct: 901 DAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKGELTETARERLKAIQEFTQLGSGYQLA 960
Query: 438 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 497
+D+ IRG G + G +Q+G + +G DL+ EML E+L ++ + V + QID+ +
Sbjct: 961 TRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV--EDTQIDLKLT 1018
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+P++YI+ E M++ A Q L Q L +YG P + L K + ++
Sbjct: 1019 AFIPNDYISDPEQKMDVYRAIATANSQK--TLGQIAADLVDRYGAIPSPVAQLFKVIELK 1076
Query: 558 RMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLE 616
+A +G +I GK + ++T M + +K++ + + + ++ + Q+ L
Sbjct: 1077 HLAKSLGFLRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI-QSRFVYSPKQVTVRGLGT 1135
Query: 617 LPREQLLNWIFQCLAELYASLP 638
L +Q L+ + + LA+ LP
Sbjct: 1136 LKPQQQLDSLLEWLAKCKDGLP 1157
>gi|425457561|ref|ZP_18837264.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9807]
gi|389801052|emb|CCI19737.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9807]
Length = 1160
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 274/603 (45%), Positives = 395/603 (65%), Gaps = 10/603 (1%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQFPYEPTPDQKKA 97
AWE K + + +++K+ VDL+ +Y R ++ YP NP E FPY+PT DQ KA
Sbjct: 562 AWEATKARVRKSVKKLAVDLINIYAQRAQKSGFAYPMDNPWQRELEDSFPYQPTADQLKA 621
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHF 156
DV+RDL E + PMDRL+CGDVGFGKTEVA+RAIF V+ G KQ +LAPT +L +QH+
Sbjct: 622 IQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTTGHKQVALLAPTTILTQQHY 680
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF+ YP I VGLL+RF++ +EK++ + +K G L+I+VGT LL V + +LGL
Sbjct: 681 HTLKERFAPYP-INVGLLNRFRTNSEKKDIVQRLKTGELDIVVGTQLLLSKAVEFRDLGL 739
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV QKEKI +FK ++DVLTLSATPIPRTLY++L+G R+ SLI+TPPP R P
Sbjct: 740 LVIDEEQRFGVNQKEKIKAFKSNIDVLTLSATPIPRTLYMSLSGVREMSLITTPPPSRRP 799
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+THLS+++ + + +AI+ ELDRGGQ+FYV+PRI+G+EE +Q PG I+I HG+
Sbjct: 800 IQTHLSSYNSDAIRTAIRNELDRGGQIFYVVPRIEGIEEKAAAIQGMIPGARISIGHGRM 859
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE TM F G IL+CT IVESGLDI NTII++D Q+FGLAQLYQLRGRVGR
Sbjct: 860 DEAELETTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIEDAQKFGLAQLYQLRGRVGR 919
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ +AHA+L YP K L++ A ERL A++E +LG G+QLA +DM IRG G + G +Q+G
Sbjct: 920 SGVQAHAWLLYPAKGELTETARERLKAIQEFTQLGSGYQLATRDMEIRGAGNLLGAEQSG 979
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +G DL+ EML E+L ++ + V + QID+ + +P++YI+ E M++
Sbjct: 980 QMEAIGFDLYMEMLQEALREIQGQEIPQV--EDTQIDLKLTAFIPNDYISDPEQKMDVYR 1037
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM-V 575
A Q L Q L +YG P + L K + ++ +A +G ++I GK +
Sbjct: 1038 AIATANSQK--TLGQIAADLVDRYGAIPSPVAQLFKVIELKHLAKSLGFSRIKPDGKQHI 1095
Query: 576 GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYA 635
++T M + +K++ + + + ++ + Q+ L + +Q L+ + + LA+
Sbjct: 1096 ILETPMEEPAWKLLQEHLPQHI-QSRFVYSPKQVTVRGLGAVKPQQQLDSLLEWLAKCKD 1154
Query: 636 SLP 638
LP
Sbjct: 1155 GLP 1157
>gi|443327777|ref|ZP_21056386.1| transcription-repair coupling factor Mfd [Xenococcus sp. PCC 7305]
gi|442792612|gb|ELS02090.1| transcription-repair coupling factor Mfd [Xenococcus sp. PCC 7305]
Length = 1163
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 275/599 (45%), Positives = 400/599 (66%), Gaps = 10/599 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK-NPAIAEFAAQFPYE 89
L+K+SD + W + KTK + I+K+ VDL++LY R K+ YP+ NP E FPY+
Sbjct: 563 LNKMSDKS-WSKTKTKVRKNIKKLAVDLVKLYAKRSKRSGFAYPQDNPWQKELEDSFPYQ 621
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPT 148
PT DQ KA DV+ DL E + PMDRL+CGDVGFGKTEVA+R+IF V+ SA KQ +LAPT
Sbjct: 622 PTTDQLKAVQDVKLDL-ESDRPMDRLVCGDVGFGKTEVAVRSIFKVITSANKQVALLAPT 680
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
+L +QH+ + ERF+ YP I VGLL+RF++ AEK+E + + G L+I+VGTH LLG
Sbjct: 681 TILTQQHYHTIKERFAPYP-INVGLLNRFRTNAEKKEIMQRLATGELDIVVGTHQLLGKD 739
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
V + +LG+LV+DEEQRFGV QKEKI ++K VDVLTLSATPIPRTLY++L+G R+ SLI+
Sbjct: 740 VKFKDLGMLVIDEEQRFGVNQKEKIKAYKSQVDVLTLSATPIPRTLYMSLSGIREMSLIT 799
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
TPPP R PIKTHLS ++ E V SAI+ ELDRGGQ+FYV+PR++G+EE L++ P
Sbjct: 800 TPPPSRRPIKTHLSPYNPEVVRSAIRNELDRGGQIFYVVPRVEGIEELGGQLREMIPSAR 859
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
IAIAHGQ +LE TM F+ G ILICT I+ESGLDI NTII++D Q+FGL+QLY
Sbjct: 860 IAIAHGQMPESELEATMLTFSNGEADILICTTIIESGLDIPRVNTIIIEDAQRFGLSQLY 919
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
QLRGRVGR+ +AHA+L YP++ L++ A +RL AL+E +LG G+QLA +DM IRG G
Sbjct: 920 QLRGRVGRSGIQAHAWLLYPNQQSLTETARKRLRALQEFSQLGSGYQLATRDMEIRGVGN 979
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHL 508
+ G +Q+G + ++G DL+ EML E++ ++ + V + Q+D+ + +P++YI+ +
Sbjct: 980 LLGAEQSGQMISIGFDLYMEMLQEAIQEIQGQEIPQV--EDTQVDLKVTAFIPADYISDM 1037
Query: 509 ENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+ M+ + + L Q +YG+ P + L++ + ++++A +G +++
Sbjct: 1038 DQKMDAYRSVATVSSKK--ELTQIAVDWCDRYGELPTPVVQLIQVMELKQIAKPLGFSRV 1095
Query: 569 YASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWI 626
GK + ++T M + + +++ + + + I L + P++QL N I
Sbjct: 1096 KPEGKQHIVLETPMAEPAWNSLLEKLPKHLRSRFIYAPNKVIVRGLGIVKPQKQLDNLI 1154
>gi|218249019|ref|YP_002374390.1| transcription-repair coupling factor [Cyanothece sp. PCC 8801]
gi|218169497|gb|ACK68234.1| transcription-repair coupling factor [Cyanothece sp. PCC 8801]
Length = 1158
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 274/602 (45%), Positives = 397/602 (65%), Gaps = 10/602 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAF 98
WE+ K + + +I+K+ VDL+ LY R K++ YP + P E FPY+PTPDQ KA
Sbjct: 558 WEKTKQRVRKSIKKLAVDLLNLYAKRAKKEGFIYPPDTPWQEELEDSFPYQPTPDQLKAV 617
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHFD 157
DV+ DL E + PMDRL+CGDVGFGKTEVA+RAIF V++G KQ +LAPT +L +QH+
Sbjct: 618 QDVKMDL-ESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGHKQVALLAPTTILTQQHYH 676
Query: 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217
+ ERF+ YP I +GLL+RF++ +EK++ + + G L+I+VGTH LLG V + NLGLL
Sbjct: 677 TLKERFAPYP-INIGLLNRFRTTSEKKDIVQRLATGELDIVVGTHQLLGQSVKFKNLGLL 735
Query: 218 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 277
V+DEEQRFGV QKEKI K VDVLTL+ATPIPRTLY++L+G R+ SLI+TPPP R PI
Sbjct: 736 VIDEEQRFGVNQKEKIKVLKTEVDVLTLTATPIPRTLYMSLSGIREISLITTPPPSRRPI 795
Query: 278 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 337
KTHLS+++ + V +AI+ ELDRGGQ+FYV+PR++G+EE +QQ P I IAHGQ
Sbjct: 796 KTHLSSYNPDVVRTAIRNELDRGGQIFYVVPRVEGIEEVAGQIQQMVPSARIVIAHGQMD 855
Query: 338 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 397
LE TM F G IL+CT I+ESGLDI NTIIV+D Q+FGL+QLYQLRGRVGR+
Sbjct: 856 VNDLEMTMLGFNNGEADILVCTTIIESGLDIPRVNTIIVEDAQKFGLSQLYQLRGRVGRS 915
Query: 398 DKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 457
+AHA+L YP+K LS+ A +RL AL+E +LG G+QLA +DM IRG G + G +Q+G
Sbjct: 916 GIQAHAWLLYPNKGQLSETARQRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSGQ 975
Query: 458 VGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE 517
+ +G +L+ EML E++ ++ + V QID+ + +PS+YI L+ M+
Sbjct: 976 MMAIGFELYMEMLQEAIKEIQGQEIPKV--DETQIDLQLTAFIPSDYIPDLQQKMDAYRR 1033
Query: 518 AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM-VG 576
A ++ L + + +YG P + LL+ + ++++ +G ++I GK V
Sbjct: 1034 IAMANSKE--QLEEIVKDWTDRYGTIPSPVRQLLQVIELKQIGKSLGFSRIKVEGKQNVV 1091
Query: 577 MKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYAS 636
++T M + +K++ +++ + + R+ + ++ L L +Q L + + L ++ +
Sbjct: 1092 LETPMEEPAWKLLQENLPNHL-RSRFVYSPKKVTVRGLGILKPQQQLENLIEWLGKMKGA 1150
Query: 637 LP 638
LP
Sbjct: 1151 LP 1152
>gi|443658327|ref|ZP_21132145.1| transcription-repair coupling factor [Microcystis aeruginosa
DIANCHI905]
gi|443332989|gb|ELS47569.1| transcription-repair coupling factor [Microcystis aeruginosa
DIANCHI905]
Length = 1169
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 274/603 (45%), Positives = 394/603 (65%), Gaps = 10/603 (1%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQFPYEPTPDQKKA 97
AWE K + + +++K+ VDL+ +Y R ++ YP NP E FPY+PT DQ KA
Sbjct: 571 AWEATKARVRKSVKKLAVDLINIYAQRAQKSGFAYPMDNPWQRELEDSFPYQPTADQLKA 630
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHF 156
DV+RDL E + PMDRL+CGDVGFGKTEVA+RAIF V+ G KQ +LAPT +L +QH+
Sbjct: 631 IQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTTGHKQVALLAPTTILTQQHY 689
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF+ YP I VGLL+RF++ +EK++ + +K G L+I+VGT LL V + +LGL
Sbjct: 690 HTLKERFAPYP-INVGLLNRFRTNSEKKDIVQRLKTGELDIVVGTQLLLSKAVEFRDLGL 748
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV QKEKI +FK ++DVLTLSATPIPRTLY++L+G R+ SLI+TPPP R P
Sbjct: 749 LVIDEEQRFGVNQKEKIKAFKSNIDVLTLSATPIPRTLYMSLSGVREMSLITTPPPSRRP 808
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+THLS+++ + + +AI+ ELDRGGQ+FYV+PRI+G+EE +Q PG IAI HG+
Sbjct: 809 IQTHLSSYNSDVIRTAIRNELDRGGQIFYVVPRIEGIEEKAAVIQGMIPGARIAIGHGRM 868
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE TM F G IL+CT IVESGLDI NTII++D Q+FGLAQLYQLRGRVGR
Sbjct: 869 DEAELETTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIEDAQKFGLAQLYQLRGRVGR 928
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ +AHA+L YP K L++ A ERL A++E +LG G+QLA +D+ IRG G + G +Q+G
Sbjct: 929 SGVQAHAWLLYPAKGELTETARERLKAIQEFTQLGSGYQLATRDLEIRGAGNLLGAEQSG 988
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +G DL+ EML E+L ++ + V + QID+ + +P++YI+ E M++
Sbjct: 989 QMEAIGFDLYMEMLQEALREIQGQEIPQV--EDTQIDLKLTAFIPNDYISDPEQKMDVYR 1046
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM-V 575
A Q L Q L +YG P + L K + ++ +A +G ++I GK +
Sbjct: 1047 AIATANSQK--TLGQIAADLVDRYGAIPSPVAQLFKVIELKHLAKSLGFSRIKPDGKQHI 1104
Query: 576 GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYA 635
++T M + +K++ + + + ++ + Q+ L + Q L+ + + LA+
Sbjct: 1105 ILETPMEEPAWKLLQEHLPQHI-QSRFVYSPKQVTVRGLGAVKPPQQLDSLLEWLAKCKD 1163
Query: 636 SLP 638
LP
Sbjct: 1164 GLP 1166
>gi|428212721|ref|YP_007085865.1| transcription-repair coupling factor Mfd [Oscillatoria acuminata PCC
6304]
gi|428001102|gb|AFY81945.1| transcription-repair coupling factor Mfd [Oscillatoria acuminata PCC
6304]
Length = 1156
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 279/628 (44%), Positives = 404/628 (64%), Gaps = 25/628 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR KRP L+KL+ + +WE + K + A++K+ VDL+ LY R Q+ YP + P
Sbjct: 538 FRTTGGKRPE-LNKLT-SKSWETTRNKVRKAVKKLAVDLLNLYAKRSDQQGFAYPPDMPW 595
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E F Y+PTPDQ KA DV+RD+ E E PMDRL+CGDVGFGKTEVA+RAIF ++A
Sbjct: 596 QQELEDSFSYQPTPDQLKATHDVKRDM-ESERPMDRLVCGDVGFGKTEVAIRAIFKAITA 654
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERF+ YP I++GLL+RF+S AE+++ + + G L+++
Sbjct: 655 GKQVALLAPTTILTQQHYHTIKERFAPYP-IQIGLLNRFRSPAERQDIQNRLATGELDLV 713
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTHS+L + + +LGLLVVDEEQRFGV QKEKI + K VDVLTL+ATPIPRTLY++L
Sbjct: 714 VGTHSVLSKSIQFRDLGLLVVDEEQRFGVNQKEKIKALKTQVDVLTLTATPIPRTLYMSL 773
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PI+THL+ + E SAI+ ELDRGGQVFYV+PR++G+EE
Sbjct: 774 SGVREMSLIATPPPSRRPIQTHLAPYDLETARSAIRQELDRGGQVFYVVPRVEGIEEVGA 833
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQQ P +AIAHGQ +LE F+ G IL+CT I+ESGLDI NTI+++D
Sbjct: 834 ALQQMVPSARVAIAHGQMNPSELEAITIAFSSGEADILVCTTIIESGLDIPRVNTILIED 893
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGLAQLYQLRGRVGR+ +AHA+LFYP L+D+A +RL A++E +LG G+QLA
Sbjct: 894 AHRFGLAQLYQLRGRVGRSGIQAHAWLFYPKSGRLTDEARKRLRAIKEFAQLGSGYQLAM 953
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + +V + QID+ +
Sbjct: 954 RDMEIRGVGNLLGAEQSGQLDAIGFDLYMEMLEEAIREIRGQEIPTV--EETQIDLTLTA 1011
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P +YI L+ M A + L + R +YG P + L++ + +++
Sbjct: 1012 FIPGDYIVDLDQKMSAYRSVALATSEK--ELAEIEADWRDRYGPIPKPVNQLMQVMKLKQ 1069
Query: 559 MAADIGITKIYASG-KMVGMKTNMNKKVFKMMIDSMTSEVHR------NSLTFEGDQI-K 610
+A +G ++I G + + ++T M + + ++ ++ + V +T G I +
Sbjct: 1070 IAKPLGFSRIKPEGTQNIVLETPMEEPAWNLLAQNLPANVQEKFVYRPGKVTVRGIGIMR 1129
Query: 611 AELLLELPREQLLNWIFQCLAELYASLP 638
AE L E L++W L + +LP
Sbjct: 1130 AEYQL----ETLIDW----LGRMQGALP 1149
>gi|425439066|ref|ZP_18819401.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9717]
gi|389715217|emb|CCI00383.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9717]
Length = 1160
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 280/617 (45%), Positives = 403/617 (65%), Gaps = 16/617 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPA 78
+R ++ P L K+S AWE K + + +++K+ VDL+ +Y R ++ YP NP
Sbjct: 545 YRHTGSQEPE-LHKISGK-AWEATKARVRKSVKKLAVDLINIYAQRAQKSGFAYPMDNPW 602
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PT DQ KA DV+RDL E + PMDRL+CGDVGFGKTEVA+RAIF V+
Sbjct: 603 QRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTT 661
Query: 139 G-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 197
G KQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF++ +EK++ + +K G L+I
Sbjct: 662 GHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDIVQRLKTGELDI 720
Query: 198 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 257
+VGT LL V + +LGLLV+DEEQRFGV QKEKI +FK ++DVLTLSATPIPRTLY++
Sbjct: 721 VVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLSATPIPRTLYMS 780
Query: 258 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
L+G R+ SLI+TPPP R PI+THLS+++ + + +AI+ ELDRGGQ+FYV+PRI+G+EE
Sbjct: 781 LSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYVVPRIEGIEEKA 840
Query: 318 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 377
+Q PG IAI HG+ +LE TM F G IL+CT IVESGLDI NTII++
Sbjct: 841 AAIQGMIPGARIAIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIE 900
Query: 378 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 437
D Q+FGLAQLYQLRGRVGR+ +AHA+L YP K+ L++ A ERL A++E +LG G+QLA
Sbjct: 901 DAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQEFTQLGSGYQLA 960
Query: 438 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 497
+D+ IRG G + G +Q+G + +G DL+ EML E+L ++ + V + QID+ +
Sbjct: 961 TRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV--EDTQIDLKLT 1018
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+P++YI+ E M++ A Q L Q L +YG P + L K + ++
Sbjct: 1019 AFIPNDYISDPEQKMDVYRAIATANSQK--NLGQIAADLVDRYGAIPSPVAQLFKVIELK 1076
Query: 558 RMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAE-LLL 615
+A +G ++I GK + ++T M + +K++ + + + ++ + Q+ L L
Sbjct: 1077 HLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI-QSRFVYSPKQVTVRGLGL 1135
Query: 616 ELPREQ---LLNWIFQC 629
P +Q LL W+ +C
Sbjct: 1136 VKPPQQLDSLLEWLAKC 1152
>gi|78184749|ref|YP_377184.1| transcription-repair coupling factor [Synechococcus sp. CC9902]
gi|78169043|gb|ABB26140.1| Transcription-repair coupling factor [Synechococcus sp. CC9902]
Length = 1192
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 271/612 (44%), Positives = 397/612 (64%), Gaps = 18/612 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFA 83
++ P LS++ AW + K + K A++K+ +DL++LY R + +P + P E
Sbjct: 557 SESPPQLSRMGGA-AWTKAKDRAKKAVRKVALDLVKLYAERQQSNGFAFPPDGPWQTELE 615
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
FPYEPTPDQ K+ DV+RD+ ER PMDRL+CGDVGFGKTEVA+RAIF ++AGKQ
Sbjct: 616 ESFPYEPTPDQLKSTTDVKRDM-ERAEPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVA 674
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ E++ L+ +K G ++ +VGTH
Sbjct: 675 MLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTTTERKSILEGLKQGTIDAVVGTHQ 733
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LL + LGLLVVDEEQRFGV QKEKI + VDVLTLSATPIPRTLY++L+G R+
Sbjct: 734 LLSKSTSFQQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGVRE 793
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
SLI+TPPP R PIKTHL++ E V SAI+ ELDRGGQVFYV+PR++G+E+ + L+
Sbjct: 794 MSLITTPPPLRRPIKTHLASLDPEAVRSAIRQELDRGGQVFYVVPRVEGIEDVANGLRTM 853
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
PG+ + +AHGQ +LE M F G +++CT IVESGLDI NTI+++D +FG
Sbjct: 854 LPGLKLLVAHGQMAEGELESAMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFG 913
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
LAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG G+QLA +DM I
Sbjct: 914 LAQLYQLRGRVGRSGIQAHAWLFYPGNASLSDNARQRLRAIQEFAQLGSGYQLAMRDMEI 973
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSE 503
RG G + G +Q+G + +G DL+ EML ESL+++ + SV Q+D+ + +P++
Sbjct: 974 RGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPSV--DDTQVDLPVTAFVPAD 1031
Query: 504 YINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
+I +P E + AA+ L++ ++G P +++ LL+ + ++ +A
Sbjct: 1032 WIT---DPDEKIAAYRAAADCTSSEALVELAAGWADRFGAIPAAVQSLLQLMELKMLAKR 1088
Query: 563 IGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELL-------- 614
G ++I + ++T M + F+++ + +H + G ++ + L
Sbjct: 1089 CGFSRIKPEKPNIVLETPMEEPAFRLLRQGLPQHLHGRFVYQPGSGLQHKALARGLGVLP 1148
Query: 615 LELPREQLLNWI 626
+E EQL++W+
Sbjct: 1149 MEKQLEQLMDWL 1160
>gi|33863047|ref|NP_894607.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9313]
gi|33634964|emb|CAE20950.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9313]
Length = 1193
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 277/613 (45%), Positives = 402/613 (65%), Gaps = 20/613 (3%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAE 81
++ P L+++ TT W++ K + + ++K+ +DL++LY RL+ P Y P P E
Sbjct: 558 SESPPKLNRMGGTT-WQKVKERTRKLVRKVAMDLVKLYAERLQA--PGYAFPPDGPWQIE 614
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
FPYEPTPDQ KA +DV+RD+ E PMDRL+CGDVGFGKTEVA+RAIF +++G+Q
Sbjct: 615 LEESFPYEPTPDQVKAVVDVKRDM-EAAQPMDRLVCGDVGFGKTEVAIRAIFKAITSGRQ 673
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+LAPT VLA+QH+ +S+RF+ YP IKV LL+RF++ +E++ L+ +K G ++ +VGT
Sbjct: 674 IAMLAPTTVLAQQHWRTLSDRFAPYP-IKVALLNRFRTSSERKSILNGLKEGTIDAVVGT 732
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL + LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIPRTLY++L+G
Sbjct: 733 HQLLSKNTTFQKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSLSGV 792
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
R+ SLI+TPPP R PIKTHL+AF +E V S+I+ ELDRGGQVFYV+PR++G+E+ LQ
Sbjct: 793 REMSLITTPPPLRRPIKTHLAAFDEEAVRSSIRQELDRGGQVFYVVPRVEGIEDVARQLQ 852
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
Q P + + +AHGQ +LE +M F G +++CT IVESGLDI NTI+++D +
Sbjct: 853 QMLPDLKLLVAHGQMAEGELESSMVAFNAGEADLMLCTTIVESGLDIPRVNTILIEDAHK 912
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
FGLAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG G+QLA +DM
Sbjct: 913 FGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSDTARQRLRAIQEFAQLGSGYQLAMRDM 972
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G +Q+G + +G DL+ EML ESL+++ + SV QID+ + +P
Sbjct: 973 EIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQGIPSV--DDTQIDLPVTAFVP 1030
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
+E+I + + A A + L++ S +YG P ++ LL+ + ++ +A
Sbjct: 1031 AEWIVDGDEKIAAYRAAANCASHE--SLIELAASWTDRYGAIPGPVQSLLQLMELKLLAR 1088
Query: 562 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELL------- 614
GI++I + M+T M + F+++ + +H + G KA++L
Sbjct: 1089 RCGISRIKPEKPNIAMETPMEEPAFRLLRQGLPQHLHGRLIYQTGSGNKAKVLARGLSVL 1148
Query: 615 -LELPREQLLNWI 626
+E EQL+ W+
Sbjct: 1149 PMEKQLEQLMEWL 1161
>gi|81300135|ref|YP_400343.1| transcription-repair coupling factor [Synechococcus elongatus PCC
7942]
gi|81169016|gb|ABB57356.1| transcription-repair coupling factor [Synechococcus elongatus PCC
7942]
Length = 1153
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 271/581 (46%), Positives = 384/581 (66%), Gaps = 10/581 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
+R +RP LS ++ + AWE+ K K + A++K+ VDL++LY R +Q+ YP + P
Sbjct: 536 YRGMGGERPE-LSSMT-SKAWEKTKAKARKAVRKVAVDLLKLYAQRSQQEGHAYPPDQPW 593
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PT DQ KA V+RD+ E PMDRL+CGDVGFGKTEVA+RAIF V+A
Sbjct: 594 QQELEESFPYQPTADQLKAVEAVKRDM-ESPQPMDRLVCGDVGFGKTEVAVRAIFKAVTA 652
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERF+ YP I++GLL+RF++ +E++ + G L+++
Sbjct: 653 GKQVALLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRTASERQNIQQRLATGELDVV 711
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + +LGLLVVDEEQRFGV QKEKI + K VDVLTLSATPIPRTLY+AL
Sbjct: 712 VGTHQLLSKGTQFRDLGLLVVDEEQRFGVNQKEKIKALKTQVDVLTLSATPIPRTLYMAL 771
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL + E V +AI E+DRGGQVFYV+PR++G+E
Sbjct: 772 SGVREMSLITTPPPSRRPIKTHLMPYDLEAVRTAISQEIDRGGQVFYVVPRVEGIEAIAT 831
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ+ P + IA+AHGQ +LE TM F ++ICT I+ESGLDI NTI+++D
Sbjct: 832 RLQEMLPSLRIAVAHGQMPEGELEATMLAFNNNEADVMICTTIIESGLDIPRVNTILIED 891
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q+FGL+QLYQLRGRVGRA +AHA+LFYP +++LSDQA +RL A++E +LG G+QLA
Sbjct: 892 AQRFGLSQLYQLRGRVGRAGIQAHAWLFYPGETVLSDQARQRLRAIQEFTQLGSGYQLAM 951
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G +Q+G + +G DL+ EML ESL ++ + V QID+++
Sbjct: 952 RDLEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLQEIRGQDIPQV--DDTQIDLSLTA 1009
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI ++ M A+ Q L+Q +YG P S + LL+ + +++
Sbjct: 1010 FIPADYIPDIDAKMSAYRAV--ASAQTPADLLQIAADWSDRYGSLPASAQQLLRVMELKQ 1067
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVH 598
+A +G +I K V ++T M +K + + + S +
Sbjct: 1068 VAKSLGFARIRTESKQHVILETPMEAPAWKRLHEKLPSNLQ 1108
>gi|86608683|ref|YP_477445.1| transcription-repair coupling factor [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557225|gb|ABD02182.1| transcription-repair coupling factor [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 1158
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 275/611 (45%), Positives = 401/611 (65%), Gaps = 9/611 (1%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQF 86
P L K+S +T WE+ K K K +++K+ DL++LY R +Q+ +P + P E F
Sbjct: 545 PPALHKMSGST-WEKTKQKVKKSLRKVAFDLLQLYAKRAEQEGYAFPPDSPWQQELEDSF 603
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
PY TPDQ +A +++RD+ E PMDRL+CGDVGFGKTEVA+RAIF V+AGKQ +LA
Sbjct: 604 PYPLTPDQLRAVQEIKRDM-ESPRPMDRLLCGDVGFGKTEVAIRAIFKAVTAGKQVALLA 662
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +L +QH+ + ERF+ YP I+VGLL+RF++ EK+E L +K G L+++VGTH LLG
Sbjct: 663 PTTILTQQHYHTLKERFAPYP-IQVGLLNRFRTSEEKKEILSRLKSGELDVVVGTHQLLG 721
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
V + +LGLLV+DEEQRFGV QKEKI K VDVLTL+ATPIPRTLY+AL+G R+ SL
Sbjct: 722 KDVQFRDLGLLVIDEEQRFGVNQKEKIKLLKTQVDVLTLTATPIPRTLYMALSGLREMSL 781
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I TPPP R PIKT+LS ++ E + +AI+ ELDRGGQVFYV+ RI+G+EE L++ PG
Sbjct: 782 IQTPPPSRRPIKTYLSPYNPEVIRTAIRQELDRGGQVFYVVNRIEGIEEASAKLREWVPG 841
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
IAIAHGQ +LE TM F G I IL+CT I+ESGLDI NTI++++ Q+FGLAQ
Sbjct: 842 ARIAIAHGQMPEGELEATMLAFNNGEIDILVCTTIIESGLDIPRVNTILIENAQEFGLAQ 901
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
LYQLRGRVGRA +AHA+LFY + +L+++A +RL A++E +LG G+QLA +DM IRG
Sbjct: 902 LYQLRGRVGRAGIQAHAWLFYREDGILTEEARKRLQAIQEFTQLGSGYQLAMRDMEIRGI 961
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
G + G +Q+G V VG DL+ EML E++ ++ + V + QID+N+ +P YI
Sbjct: 962 GNLLGTEQSGQVNAVGFDLYLEMLQEAIREIRGQEIPQV--EDTQIDLNVTAMIPQSYIP 1019
Query: 507 HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGIT 566
+ M+ A + L+Q + + ++G P + LL+ + ++ +A +G +
Sbjct: 1020 DEDQKMQAYRHLAAAGSRV--ELLQIAQEWQDRFGPLPKPTQELLRVMELKILARTLGFS 1077
Query: 567 KIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWI 626
+I + + V ++T M + + + +++ + + ++ ++ L +P Q L +
Sbjct: 1078 RIKPAKEHVLLETPMEEPAWNRLKEALPTHLQ-PRFVYQPGKVTVRGLGMVPAAQQLENL 1136
Query: 627 FQCLAELYASL 637
Q L ++ +L
Sbjct: 1137 LQWLDKMSLAL 1147
>gi|87125795|ref|ZP_01081638.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917]
gi|86166604|gb|EAQ67868.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917]
Length = 1184
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 279/624 (44%), Positives = 402/624 (64%), Gaps = 13/624 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR N + P LSK+ + AW + K + A++K+ +DL++LY R + +P + P
Sbjct: 545 FRAN-SDTPPQLSKMGGS-AWVKAKERASKAVRKVALDLVKLYAERHQAPGFAFPGDGPW 602
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPYEPTPDQ KA DV+RD+ E+ PMDRL+CGDVGFGKTEVA+RAIF ++A
Sbjct: 603 QEELEDSFPYEPTPDQLKATADVKRDM-EQPQPMDRLVCGDVGFGKTEVAIRAIFKAITA 661
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ +E++ L+ +K G ++ +
Sbjct: 662 GKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTASERKAILEGLKQGTIDAV 720
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL ++ LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIPRTLY++L
Sbjct: 721 VGTHQLLSKSTSFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSL 780
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL+A +E V SAI+ ELDRGGQVFYV+PR++G+EE
Sbjct: 781 SGVREMSLITTPPPLRRPIKTHLAALDEEAVRSAIRQELDRGGQVFYVVPRVEGIEEVAA 840
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L+Q PG+ + +AHGQ +LE M F G +++CT IVESGLDI NTI+++D
Sbjct: 841 QLRQMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRVNTILIED 900
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGLAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG G+QLA
Sbjct: 901 AHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGDASLSDAARQRLRAIQEFAQLGSGYQLAM 960
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML ESL+++ + +V Q+D+ +
Sbjct: 961 RDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPAV--DDTQVDLQVTA 1018
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+++I + M A + + L+ + +YG P ++ LL+ + ++
Sbjct: 1019 FLPADWITDSDEKMAAYRAAAECTSAE--ALVDLAATWADRYGALPGPVQSLLQLMDLKL 1076
Query: 559 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLE-- 616
+A G ++I + ++T M + F+++ + +H + G A++L
Sbjct: 1077 LAKRCGFSRIRPEKPNIALETPMEEPAFRLLRQGLPQHLHGRLVYQAGTGTSAKVLARGL 1136
Query: 617 --LPREQLLNWIFQCLAELYASLP 638
LP E+ L + L + A +P
Sbjct: 1137 GVLPMEKQLEELKGWLELMAAQIP 1160
>gi|166364821|ref|YP_001657094.1| transcription-repair coupling factor [Microcystis aeruginosa
NIES-843]
gi|166087194|dbj|BAG01902.1| transcription-repair coupling factor [Microcystis aeruginosa
NIES-843]
Length = 1160
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 274/598 (45%), Positives = 395/598 (66%), Gaps = 14/598 (2%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQFPYEPTPDQKKA 97
AWE K + + +++K+ VDL+ +Y R ++ YP NP E FPY+PT DQ KA
Sbjct: 562 AWEATKARVRKSVKKLAVDLINIYAQRAQKSGFAYPMDNPWQRELEDSFPYQPTADQLKA 621
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHF 156
DV+RDL E + PMDRL+CGDVGFGKTEVA+RAIF V+ G KQ +LAPT +L +QH+
Sbjct: 622 IQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTTGHKQVALLAPTTILTQQHY 680
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF+ YP I VGLL+RF++ +EK++ + +K G L+I+VGT LL V + +LGL
Sbjct: 681 HTLKERFAPYP-INVGLLNRFRTNSEKKDIVQRLKTGELDIVVGTQLLLSKAVEFKDLGL 739
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV QKEKI +FK ++DVLTL+ATPIPRTLY++L+G R+ SLI+TPPP R P
Sbjct: 740 LVIDEEQRFGVNQKEKIKAFKSNIDVLTLTATPIPRTLYMSLSGVREMSLITTPPPSRRP 799
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+THLS+++ + + +AI+ ELDRGGQ+FYV+PRI+G+EE +Q PG IAI HG+
Sbjct: 800 IQTHLSSYNSDVIRTAIRNELDRGGQIFYVVPRIEGIEEKAAAIQGMIPGARIAIGHGRM 859
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE TM F G IL+CT IVESGLDI NTII++D Q+FGLAQLYQLRGRVGR
Sbjct: 860 DEAELETTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIEDAQKFGLAQLYQLRGRVGR 919
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ +AHA+L YP K+ L++ A ERL A++E +LG G+QLA +D+ IRG G + G +Q+G
Sbjct: 920 SGVQAHAWLLYPAKAELTETARERLKAIQEFTQLGSGYQLATRDLEIRGAGNLLGAEQSG 979
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +G DL+ EML E+L ++ + V + QID+ + +P++YI+ E M++
Sbjct: 980 QMEAIGFDLYMEMLQEALREIQGQEIPQV--EDTQIDLKLTAFIPNDYISDPEQKMDVYR 1037
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM-V 575
A Q L Q L +YG P + L K + ++ +A +G ++I GK +
Sbjct: 1038 AIATANSQK--NLGQIAADLVDRYGAIPSPVAQLFKVIELKHLAKSLGFSRIKPDGKQHI 1095
Query: 576 GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAE-LLLELPREQ---LLNWIFQC 629
++T M + +K++ + + + ++ + Q+ L L P +Q LL+W+ +C
Sbjct: 1096 ILETPMEEPAWKLLQEHLPQHI-QSRFVYSPKQVTVRGLGLVKPPQQLDSLLDWLAKC 1152
>gi|425460471|ref|ZP_18839952.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9808]
gi|389826834|emb|CCI22364.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9808]
Length = 1160
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 273/603 (45%), Positives = 394/603 (65%), Gaps = 10/603 (1%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQFPYEPTPDQKKA 97
AWE K + + +++K+ VDL+ +Y R ++ YP NP E FPY+PT DQ KA
Sbjct: 562 AWEATKARVRKSVKKLAVDLINIYAQRAQKSGFAYPMDNPWQRELEDSFPYQPTADQLKA 621
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHF 156
DV+RDL E + PMDRL+CGDVGFGKTEVA+RAIF V+ G KQ +LAPT +L +QH+
Sbjct: 622 IQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTTGHKQVALLAPTTILTQQHY 680
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF+ YP I VGLL+RF++ +EK++ + +K G L+I+VGT LL V + +LGL
Sbjct: 681 HTLKERFAPYP-INVGLLNRFRTNSEKKDIVQRLKTGELDIVVGTQLLLSKAVEFKDLGL 739
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV QKEKI +FK ++DVLTLSATPIPRTLY++L+G R+ SLI+TPPP R P
Sbjct: 740 LVIDEEQRFGVNQKEKIKAFKSNIDVLTLSATPIPRTLYMSLSGVREMSLITTPPPSRRP 799
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+THLS+++ + + +AI+ ELDRGGQ+FYV+PRI+G+EE +Q PG I+I HG+
Sbjct: 800 IQTHLSSYNSDAIRTAIRNELDRGGQIFYVVPRIEGIEEKAAAIQGMIPGARISIGHGRM 859
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE TM F G IL+CT IVESGLDI NTII++D Q+FGLAQLYQLRGRVGR
Sbjct: 860 DEAELETTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIEDAQKFGLAQLYQLRGRVGR 919
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ +AHA+L YP K L++ A ERL A++E +LG G+QLA +D+ IRG G + G +Q+G
Sbjct: 920 SGVQAHAWLLYPAKGELTETARERLKAIQEFTQLGSGYQLATRDLEIRGAGNLLGAEQSG 979
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +G DL+ EML E+L ++ + V + QID+ + +P++YI+ E M++
Sbjct: 980 QMEAIGFDLYMEMLQEALREIQGQEIPQV--EDTQIDLKLTAFIPNDYISDPEQKMDVYR 1037
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM-V 575
A Q L Q L +YG P + L K + ++ +A +G ++I GK +
Sbjct: 1038 AIATANSQK--TLGQIAADLVDRYGAIPSPVAQLFKVIELKHLAKSLGFSRIKPDGKQHI 1095
Query: 576 GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYA 635
++T M + +K++ + + + ++ + Q+ L + Q L+ + + LA+
Sbjct: 1096 ILETPMEEPAWKLLQEHLPQHI-QSRFVYSPKQVTVRGLGAVKPPQQLDSLLEWLAKCKD 1154
Query: 636 SLP 638
LP
Sbjct: 1155 GLP 1157
>gi|119512690|ref|ZP_01631763.1| transcriptional-repair coupling factor [Nodularia spumigena CCY9414]
gi|119462657|gb|EAW43621.1| transcriptional-repair coupling factor [Nodularia spumigena CCY9414]
Length = 1164
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 276/574 (48%), Positives = 380/574 (66%), Gaps = 14/574 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR K P L K++ AWE K + + AI+K+ VDL++LY R KQ+ YP++ P
Sbjct: 548 FRRTGDKAPE-LHKMTGK-AWENTKNRVRKAIKKLAVDLLKLYAARSKQEGYTYPQDMPW 605
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+ T DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF V++
Sbjct: 606 QEEMEDSFPYQATTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTS 664
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERF+ YP + +GLL+RF+S E+ + G L+I+
Sbjct: 665 GKQVALLAPTTILTQQHYHTLKERFAPYP-VNIGLLNRFRSAEERRTIQKRLATGELDIV 723
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V + +LGLLVVDEEQRFGV QKEKI S K VDVLTLSATPIPRTLY++L
Sbjct: 724 VGTHQLLGKNVSFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSL 783
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL+ S E V SAI+ ELDRGGQVFYV+PR++G+EE
Sbjct: 784 SGIREMSLITTPPPTRRPIKTHLAPLSPEIVRSAIRQELDRGGQVFYVVPRVEGIEELTA 843
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ PG AIAHG+ +LE TM F+ G IL+CT I+ESGLDI NTI+++D
Sbjct: 844 NLREMIPGGKFAIAHGRLDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILIED 903
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG G+QLA
Sbjct: 904 AHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRTLSDAARQRLRAIQEFTQLGSGYQLAM 963
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V QID+N+
Sbjct: 964 RDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEEAIREIRGQEIPKV--DETQIDLNLTA 1021
Query: 499 RLPSEYINHLENPMEMVN--EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
+PS+YI ++ M A K++E+ L T +YG P LL+ + +
Sbjct: 1022 FIPSDYIPDVDQKMSAYRAVAAAKSSEE----LKYITAEWGDRYGALPVPANQLLRVMQL 1077
Query: 557 RRMAADIGITKIYASGKM-VGMKTNMNKKVFKMM 589
+++A +G ++I K + ++T M + + ++
Sbjct: 1078 KQLAKKLGFSRIKPENKQHIVLETPMEEPAWNLL 1111
>gi|78212830|ref|YP_381609.1| transcription-repair coupling factor [Synechococcus sp. CC9605]
gi|78197289|gb|ABB35054.1| transcription-repair coupling factor [Synechococcus sp. CC9605]
Length = 1192
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 276/620 (44%), Positives = 405/620 (65%), Gaps = 14/620 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFA 83
++ P L+++ T AW + K + K A++K+ +DL++LY R + +P + P E
Sbjct: 557 SETPPQLNRMGGT-AWNKAKERAKKAVRKVALDLVKLYAERQQAAGFAFPTDGPWQVEME 615
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
FPY+PTPDQ KA DV+RD+ ER+ PMDRL+CGDVGFGKTEVA+RAIF ++AGKQ
Sbjct: 616 ESFPYDPTPDQLKATADVKRDM-ERQEPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVA 674
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ +E++ LD +K G ++ +VGTH
Sbjct: 675 MLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTASERKSILDGLKQGTIDAVVGTHQ 733
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LL + LGLLVVDEEQRFGV QKEKI + VDVLTLSATPIPRTLY++L+G R+
Sbjct: 734 LLSKGASFQELGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGVRE 793
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
SLI+TPPP R PIKTHL++ E + SAI+ ELDRGGQVFYV+PR++G+EE L++
Sbjct: 794 MSLITTPPPLRRPIKTHLASLDPEAMRSAIRQELDRGGQVFYVVPRVEGIEEVAAGLREM 853
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
PG+ + +AHGQ +LE M F G +++CT IVESGLDI NTI+++D +FG
Sbjct: 854 LPGLKLLVAHGQMAEGELENAMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFG 913
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
LAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG G+QLA +DM I
Sbjct: 914 LAQLYQLRGRVGRSGIQAHAWLFYPGNASLSDTARQRLRAIQEFAQLGSGYQLAMRDMEI 973
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSE 503
RG G + G QQ+G + +G DL+ EML ESL+++ + SV + Q+D+ + +P++
Sbjct: 974 RGVGNLLGVQQSGQMETIGFDLYMEMLQESLAEIQGQDIPSV--EDTQVDLPVTAFVPAD 1031
Query: 504 YINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
+I +P E + AA+ L++ +YG P ++ LL+ + ++ +A
Sbjct: 1032 WIT---DPDEKIAAYRAAADCLTAEALVELAAGWADRYGALPAAVVSLLQLMELKLLAKR 1088
Query: 563 IGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLE----LP 618
G ++I + ++T M + F+++ + +H + G+ I+ +++ LP
Sbjct: 1089 CGFSRIKPEKPNIVLETPMEEPAFRLLRQGLPQHLHGRLVYQAGNGIQHKVMARGLGVLP 1148
Query: 619 REQLLNWIFQCLAELYASLP 638
E+ L + + L + A +P
Sbjct: 1149 MEKQLEQLMEWLRLMAAQIP 1168
>gi|425437761|ref|ZP_18818176.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9432]
gi|389677224|emb|CCH93819.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9432]
Length = 1169
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 273/603 (45%), Positives = 394/603 (65%), Gaps = 10/603 (1%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQFPYEPTPDQKKA 97
AWE K + + +++K+ VDL+ +Y R ++ YP NP E FPY+PT DQ KA
Sbjct: 571 AWEATKARVRKSVKKLAVDLINIYAQRAQKSGFAYPMDNPWQRELEDSFPYQPTADQLKA 630
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHF 156
DV+RDL E + PMDRL+CGDVGFGKTEVA+RAIF V+ G KQ +LAPT +L +QH+
Sbjct: 631 IQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTTGHKQVALLAPTTILTQQHY 689
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF+ YP I VGLL+RF++ +EK++ + +K G L+I+VGT LL V + +LGL
Sbjct: 690 HTLKERFAPYP-INVGLLNRFRTNSEKKDIVQRLKTGELDIVVGTQLLLSKAVEFKDLGL 748
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV QKEKI +FK ++DVLTLSATPIPRTLY++L+G R+ SLI+TPPP R P
Sbjct: 749 LVIDEEQRFGVNQKEKIKAFKSNIDVLTLSATPIPRTLYMSLSGVREMSLITTPPPSRRP 808
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+THLS+++ + + +AI+ ELDRGGQ+FYV+PRI+G+EE +Q PG I+I HG+
Sbjct: 809 IQTHLSSYNSDVIRTAIRNELDRGGQIFYVVPRIEGIEEKAAAIQGMIPGARISIGHGRM 868
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE TM F G IL+CT IVESGLDI NTII++D Q+FGLAQLYQLRGRVGR
Sbjct: 869 DESELETTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIEDAQKFGLAQLYQLRGRVGR 928
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ +AHA+L YP K L++ A ERL A++E +LG G+QLA +D+ IRG G + G +Q+G
Sbjct: 929 SGVQAHAWLLYPAKGELTETARERLKAIQEFTQLGSGYQLATRDLEIRGAGNLLGAEQSG 988
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +G DL+ EML E+L ++ + V + QID+ + +P++YI+ E M++
Sbjct: 989 QMEAIGFDLYMEMLQEALREIQGQEIPQV--EDTQIDLKLTAFIPNDYISDPEQKMDVYR 1046
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM-V 575
A Q L Q L +YG P + L K + ++ +A +G ++I GK +
Sbjct: 1047 AIATANSQK--TLGQIAADLVDRYGAIPSPVAQLFKVIELKHLAKSLGFSRIKPDGKQHI 1104
Query: 576 GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYA 635
++T M + +K++ + + + ++ + Q+ L + Q L+ + + LA+
Sbjct: 1105 ILETPMEEPAWKLLQEHLPQHI-QSRFVYSPKQVTVRGLGTVKPPQQLDSLLEWLAKCKD 1163
Query: 636 SLP 638
LP
Sbjct: 1164 GLP 1166
>gi|16331597|ref|NP_442325.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
gi|451815749|ref|YP_007452201.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
gi|3914015|sp|Q55750.1|MFD_SYNY3 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|1001661|dbj|BAA10395.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
gi|451781718|gb|AGF52687.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
Length = 1199
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 277/582 (47%), Positives = 384/582 (65%), Gaps = 11/582 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR T RP L K+ WE K K + A++K+ VDL+ LY R KQ YP + P
Sbjct: 577 FRHTGT-RPPELHKMGGKV-WEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYAYPPDSPW 634
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ KA DV+RDL E + PMDRL+CGDVGFGKTEVA+RAIF V++
Sbjct: 635 QQELEDSFPYQPTPDQLKAVQDVKRDL-EGDRPMDRLVCGDVGFGKTEVAVRAIFKAVTS 693
Query: 139 G-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 197
G KQ +LAPT VL +QH+ + ERF+ YP I +GLL+RF++ +EK+E L +K G L+I
Sbjct: 694 GNKQVALLAPTTVLTQQHYHTLKERFAPYP-ITIGLLNRFRTASEKKEILAKLKSGELDI 752
Query: 198 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 257
+VGT +LG+ V + +LGLLV+DEEQRFGV QKEKI + K VDVLTL+ATPIPRTLY++
Sbjct: 753 VVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIPRTLYMS 812
Query: 258 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
L+G R+ SLI+TPPP R PIKTHLS ++ E + +AI+ ELDRGGQVFYV+PRI+G+EE
Sbjct: 813 LSGIREMSLITTPPPSRRPIKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIEGIEELG 872
Query: 318 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 377
L+Q P IAI HGQ +LE TM F G IL+CT I+E+GLDI NTIIV+
Sbjct: 873 GQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRVNTIIVE 932
Query: 378 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 437
D Q+FGLAQLYQLRGRVGR+ +AHA+L YP++ L+++A RL AL+E +LG G+QLA
Sbjct: 933 DAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLGSGYQLA 992
Query: 438 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 497
+DM IRG G + G +Q+G + +G + + EML +++ ++ + V + QID+ +
Sbjct: 993 TRDMEIRGVGNLLGAEQSGQMEAIGYEFYMEMLQDAIKEIQGQEIPKV--EDTQIDLPLT 1050
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+PS+YI LE M D L + +YG P +E L K + ++
Sbjct: 1051 AFIPSDYIPDLEEKMAAYRRITSIESTD--ELPKIALDWGDRYGMLPSPVEELFKVVKLK 1108
Query: 558 RMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVH 598
+A +G ++I GK + ++T M + +K++ +++ + +
Sbjct: 1109 HLAKSLGFSRIKVEGKQNLVLETPMEEPAWKLLAENLPNHLQ 1150
>gi|124023141|ref|YP_001017448.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9303]
gi|123963427|gb|ABM78183.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9303]
Length = 1193
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 277/613 (45%), Positives = 401/613 (65%), Gaps = 20/613 (3%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAE 81
++ P L+++ T AW++ K + + ++K+ +DL++LY RL+ P Y P P E
Sbjct: 558 SESPPKLNRMGGT-AWQKIKERTRKLVRKVAMDLVKLYAERLQA--PGYAFPPDGPWQIE 614
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
FPYEPTPDQ KA +DV+RD+ E PMDRL+CGDVGFGKTEVA+RAIF +++G+Q
Sbjct: 615 LEESFPYEPTPDQVKAVVDVKRDM-EAAQPMDRLVCGDVGFGKTEVAIRAIFKAITSGRQ 673
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+LAPT VLA+QH+ +S+RF+ YP IKV LL+RF++ +E++ L+ +K G ++ +VGT
Sbjct: 674 IAMLAPTTVLAQQHWRTLSDRFAPYP-IKVALLNRFRTSSERKSILNGLKEGTIDAVVGT 732
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL + LGLLVVDEEQRFGV QKEKI + VDVLTLSATPIPRTLY++L+G
Sbjct: 733 HQLLSKNTTFQKLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGV 792
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
R+ SLI+TPPP R PIKTHL+AF +E V S+I+ ELDRGGQVFYV+PR++G+E+ LQ
Sbjct: 793 REMSLITTPPPLRRPIKTHLAAFDEEAVRSSIRQELDRGGQVFYVVPRVEGIEDVASQLQ 852
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
Q P + + +AHGQ +LE +M F G +++CT IVESGLDI NTI+++D +
Sbjct: 853 QMLPDLKLLVAHGQMAEGELESSMVAFNAGEADLMLCTTIVESGLDIPRVNTILIEDAHK 912
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
FGLAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG G+QLA +DM
Sbjct: 913 FGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSDAARQRLRAIQEFAQLGSGYQLAMRDM 972
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G +Q+G + +G DL+ EML ESL+++ + SV QID+ + +P
Sbjct: 973 EIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQGIPSV--DDTQIDLPVTAFVP 1030
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
+E+I + + A A + L++ S +YG P ++ LL+ + ++ +A
Sbjct: 1031 AEWIVDGDEKIAAYRAAANCASHE--SLIELAASWTDRYGAIPGPVQSLLQLMELKLLAR 1088
Query: 562 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELL------- 614
GI++I + M+T M + F+++ + +H + G KA++L
Sbjct: 1089 RCGISRIKPEKPNIAMETPMEEPAFRLLRQGLPQHLHGRLIYQTGSGNKAKVLARGLSVL 1148
Query: 615 -LELPREQLLNWI 626
+E EQL+ W+
Sbjct: 1149 PMEKQLEQLMEWL 1161
>gi|383323339|ref|YP_005384193.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383326508|ref|YP_005387362.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383492392|ref|YP_005410069.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384437660|ref|YP_005652385.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
gi|339274693|dbj|BAK51180.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
gi|359272659|dbj|BAL30178.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359275829|dbj|BAL33347.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359278999|dbj|BAL36516.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407960774|dbj|BAM54014.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
Length = 1162
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 277/582 (47%), Positives = 384/582 (65%), Gaps = 11/582 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR T RP L K+ WE K K + A++K+ VDL+ LY R KQ YP + P
Sbjct: 540 FRHTGT-RPPELHKMGGKV-WEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYAYPPDSPW 597
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ KA DV+RDL E + PMDRL+CGDVGFGKTEVA+RAIF V++
Sbjct: 598 QQELEDSFPYQPTPDQLKAVQDVKRDL-EGDRPMDRLVCGDVGFGKTEVAVRAIFKAVTS 656
Query: 139 G-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 197
G KQ +LAPT VL +QH+ + ERF+ YP I +GLL+RF++ +EK+E L +K G L+I
Sbjct: 657 GNKQVALLAPTTVLTQQHYHTLKERFAPYP-ITIGLLNRFRTASEKKEILAKLKSGELDI 715
Query: 198 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 257
+VGT +LG+ V + +LGLLV+DEEQRFGV QKEKI + K VDVLTL+ATPIPRTLY++
Sbjct: 716 VVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIPRTLYMS 775
Query: 258 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
L+G R+ SLI+TPPP R PIKTHLS ++ E + +AI+ ELDRGGQVFYV+PRI+G+EE
Sbjct: 776 LSGIREMSLITTPPPSRRPIKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIEGIEELG 835
Query: 318 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 377
L+Q P IAI HGQ +LE TM F G IL+CT I+E+GLDI NTIIV+
Sbjct: 836 GQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRVNTIIVE 895
Query: 378 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 437
D Q+FGLAQLYQLRGRVGR+ +AHA+L YP++ L+++A RL AL+E +LG G+QLA
Sbjct: 896 DAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLGSGYQLA 955
Query: 438 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 497
+DM IRG G + G +Q+G + +G + + EML +++ ++ + V + QID+ +
Sbjct: 956 TRDMEIRGVGNLLGAEQSGQMEAIGYEFYMEMLQDAIKEIQGQEIPKV--EDTQIDLPLT 1013
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+PS+YI LE M D L + +YG P +E L K + ++
Sbjct: 1014 AFIPSDYIPDLEEKMAAYRRITSIESTD--ELPKIALDWGDRYGMLPSPVEELFKVVKLK 1071
Query: 558 RMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVH 598
+A +G ++I GK + ++T M + +K++ +++ + +
Sbjct: 1072 HLAKSLGFSRIKVEGKQNLVLETPMEEPAWKLLAENLPNHLQ 1113
>gi|148242564|ref|YP_001227721.1| transcription-repair coupling factor [Synechococcus sp. RCC307]
gi|147850874|emb|CAK28368.1| Transcription-repair coupling factor [Synechococcus sp. RCC307]
Length = 1183
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 267/588 (45%), Positives = 385/588 (65%), Gaps = 8/588 (1%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQF 86
P L+K+ AW + K + + A++K+ DL++LY R + +P P E F
Sbjct: 551 PPQLNKMGGA-AWAKTKARARKAVRKVAFDLVKLYAERTESPGFAFPVDGPWQNELEDSF 609
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
PYEPTPDQ KA +V+RD+ E+ PMDRL+CGDVGFGKTEVALRAIF V+AG+Q +LA
Sbjct: 610 PYEPTPDQLKAITEVKRDM-EQGKPMDRLVCGDVGFGKTEVALRAIFKAVTAGRQTALLA 668
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT VLA+QH+ +SERF+ YP IKV LL+RF++ +E++E L + G ++++VGTH LLG
Sbjct: 669 PTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTASERKEILKGLSDGAIDVVVGTHQLLG 727
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
+ LGLLVVDEEQRFGV QKEKI + VDVLTLSATPIPRTLY++L+G R+ SL
Sbjct: 728 KGTSFKQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGVREMSL 787
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPPP R PIKTHL++ +E V SAI+ ELDRGGQVFYV+PR++G+EE L+Q PG
Sbjct: 788 ITTPPPLRRPIKTHLASLDEEAVRSAIRQELDRGGQVFYVVPRVEGIEEVAGGLRQMLPG 847
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+ + +AHGQ +LE M F G +++CT IVESGLDI NTI+++D Q+FGL+Q
Sbjct: 848 LRLLVAHGQMPEGELESAMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDSQKFGLSQ 907
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
LYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG G+QLA +DM IRG
Sbjct: 908 LYQLRGRVGRSGIQAHAWLFYPGDASLSDAARQRLRAIQEFAQLGSGYQLAMRDMEIRGV 967
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
G + G +Q+G + +G DL+ EML E L+++ + +V QID+++ +P++++
Sbjct: 968 GNLLGVEQSGQMETIGFDLYMEMLQEELAEIRGQDIPAV--DDTQIDLSVTAFIPADWVT 1025
Query: 507 HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGIT 566
+ M A ++ L+Q +YG P ++ LL+ + ++ +A G +
Sbjct: 1026 EADEKMAAYRAAADCDSRE--GLLQLAADWVDRYGPLPAPVQSLLQLMEIKLLAKRCGFS 1083
Query: 567 KIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELL 614
+I + ++T M + F+ + + + +H + G A++L
Sbjct: 1084 RIKPEKPNLVLETPMEEPAFRRLRQGLATHLHGRLVYQAGSGTTAKVL 1131
>gi|67921537|ref|ZP_00515055.1| Transcription-repair coupling factor [Crocosphaera watsonii WH 8501]
gi|67856649|gb|EAM51890.1| Transcription-repair coupling factor [Crocosphaera watsonii WH 8501]
Length = 1160
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 275/573 (47%), Positives = 384/573 (67%), Gaps = 11/573 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPA 78
+R E+K P+ L K++ T W++ K K + I+K+ VDL+ LY R K YP P
Sbjct: 543 YRHTESKPPK-LHKMTGKT-WQKSKQKVRKNIRKLAVDLINLYAKRAKNIGFTYPLDTPW 600
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ KA +V+ DL E + PMDRL+CGDVGFGKTEVA+RAIF V++
Sbjct: 601 QQELEDSFPYQPTPDQLKAIQEVKIDL-ESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTS 659
Query: 139 G-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 197
G KQ + LAPT +L +QH+ + ERF+ YP I +GLL+RF++ +EK+E + + G L+I
Sbjct: 660 GHKQVVFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTASEKKEIIQRLSTGELDI 718
Query: 198 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 257
+VGT LLG V +N+LGLLV+DEEQRFGV QKEKI K +DVLTLSATPIPRTLY++
Sbjct: 719 VVGTQQLLGKSVKFNDLGLLVIDEEQRFGVNQKEKIKDMKSHIDVLTLSATPIPRTLYMS 778
Query: 258 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
L+G R+ SLI+TPPP R PIKTHLS ++ + V +AI+ ELDRGGQVFYV+PR++G+EE
Sbjct: 779 LSGIREMSLITTPPPSRRPIKTHLSRYNPDAVRNAIRNELDRGGQVFYVVPRVEGIEEVA 838
Query: 318 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 377
+++ P +AI HGQ +LE TM F G IL+CT IVESGLDI NTIIV+
Sbjct: 839 AQIKRMVPSARMAIGHGQMDVNELEMTMLGFNNGDADILVCTTIVESGLDIPRVNTIIVE 898
Query: 378 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 437
D Q+FGLAQLYQLRGRVGRA +AHA+L YP KS L++ A +RL AL+E +LG G+QLA
Sbjct: 899 DAQKFGLAQLYQLRGRVGRAGIQAHAWLLYPSKSELTETARKRLRALQEFSQLGSGYQLA 958
Query: 438 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 497
+DM IRG G + G +Q+G + ++G +L+ EML ES+ ++ + V + Q+D+ +
Sbjct: 959 TRDMEIRGVGNLLGAEQSGQMESIGFELYMEMLQESIREIQGQEIPKV--EDTQVDLQLT 1016
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+P++YI +E M A Q L Q +YGK P ++ LL+ + ++
Sbjct: 1017 AFIPTDYIPDMEQKMSAYRAIAVANSQK--ELSQIAAEWSDRYGKLPVPVQQLLQVIELK 1074
Query: 558 RMAADIGITKIYASGKM-VGMKTNMNKKVFKMM 589
++A +G ++I GK + ++T M + +K++
Sbjct: 1075 QLAKSLGFSRIKPEGKQHIVLETPMEEPAWKLL 1107
>gi|260435284|ref|ZP_05789254.1| transcription-repair coupling factor [Synechococcus sp. WH 8109]
gi|260413158|gb|EEX06454.1| transcription-repair coupling factor [Synechococcus sp. WH 8109]
Length = 1203
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 274/619 (44%), Positives = 401/619 (64%), Gaps = 12/619 (1%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFA 83
++ P L+++ T AW + K + K A++K+ +DL++LY R + +P + P E
Sbjct: 568 SETPPQLNRMGGT-AWNKAKERAKKAVRKVALDLVKLYAERQQAAGFAFPTDGPWQVEME 626
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
FPY+PTPDQ KA DV+RD+ ER+ PMDRL+CGDVGFGKTEVA+RAIF ++AGKQ
Sbjct: 627 ESFPYDPTPDQLKATADVKRDM-ERQEPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVA 685
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ +E++ LD +K G ++ +VGTH
Sbjct: 686 MLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTASERKSILDGLKQGTIDAVVGTHQ 744
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LL + LGLLVVDEEQRFGV QKEKI + VDVLTLSATPIPRTLY++L+G R+
Sbjct: 745 LLSKGASFQELGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGVRE 804
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
SLI+TPPP R PIKTHL++ E V SAI+ ELDRGGQVFYV+PR++G++E L+
Sbjct: 805 MSLITTPPPLRRPIKTHLASLDPEAVRSAIRQELDRGGQVFYVVPRVEGIDEVAAGLRAM 864
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
PG+ + +AHGQ +LE M F G +++CT IVESGLDI NTI+++D +FG
Sbjct: 865 LPGLKLLVAHGQMAEGELENAMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFG 924
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
LAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG G+QLA +DM I
Sbjct: 925 LAQLYQLRGRVGRSGIQAHAWLFYPGNASLSDTARQRLRAIQEFAQLGSGYQLAMRDMEI 984
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSE 503
RG G + G QQ+G + +G DL+ EML ESL+++ + SV + Q+D+ + +P++
Sbjct: 985 RGVGNLLGVQQSGQMETIGFDLYMEMLQESLAEIQGQDIPSV--EDTQVDLPVTAFVPAD 1042
Query: 504 YINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADI 563
+I + + A + L++ S +YG P ++ LL+ + ++ +A
Sbjct: 1043 WITDPDEKIAAYRAASDCLSAE--ALVELAASWADRYGALPAAVVSLLQLMELKLLAKQC 1100
Query: 564 GITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLE----LPR 619
G ++I + ++T M + F+++ + +H + G I+ +++ LP
Sbjct: 1101 GFSRIKPEKPNILLETPMEEPAFRLLRQGLPKHLHGRLIYQAGSGIQHKVMARGIGVLPM 1160
Query: 620 EQLLNWIFQCLAELYASLP 638
E+ L + + L + A +P
Sbjct: 1161 EKQLEQLMEWLRLMAAQIP 1179
>gi|317970142|ref|ZP_07971532.1| transcription-repair coupling factor [Synechococcus sp. CB0205]
Length = 1183
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 276/613 (45%), Positives = 396/613 (64%), Gaps = 16/613 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFA 83
+ P L+++ T AW + K + + A++K+ +DL++LY R K +P P E
Sbjct: 548 SDSPPDLNRMGGT-AWNKAKERARKAVRKVALDLVKLYAERHKAPGFAFPVDGPWQNELE 606
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
FPYEPTPDQ KA DV+RD+ E+ PMDRL+CGDVGFGKTEVA+RAIF V+AGKQ
Sbjct: 607 DSFPYEPTPDQVKAIADVKRDM-EQPQPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVA 665
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ +E++ + + G ++++VGTH
Sbjct: 666 MLAPTTVLAQQHWRSLSERFAPYP-IKVSLLNRFRTSSERKVIQEGLGEGTVDVVVGTHQ 724
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LLG + LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIPRTLY++L+G R+
Sbjct: 725 LLGKGTQFKELGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSLSGVRE 784
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
SLI+TPPP R PIKTHL+A +E V SAI+ ELDRGGQ+FYV+PR++G+EE + L+Q
Sbjct: 785 MSLITTPPPLRRPIKTHLAALDEEAVRSAIRQELDRGGQIFYVVPRVEGIEEVAEGLRQM 844
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
PG+ + +AHGQ +LE M F G +++CT IVESGLDI NTI+++D +FG
Sbjct: 845 IPGLRLLVAHGQMAEGELESAMVAFNAGEADLMLCTTIVESGLDIPRVNTILIEDAHKFG 904
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
LAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG G+QLA +DM I
Sbjct: 905 LAQLYQLRGRVGRSGIQAHAWLFYPGDASLSDAARQRLRAIQEFAQLGSGYQLAMRDMEI 964
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSE 503
RG G + G +Q+G + +G DL+ EML ESL+++ + +V QID+ + +P +
Sbjct: 965 RGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPAV--DDTQIDLQLTAFIPGD 1022
Query: 504 YINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADI 563
+I+ + M A D L+Q +YG P + LL+ + ++ +A
Sbjct: 1023 WISDNDEKMAAYRAAADCISPD--SLLQLAADWVDRYGAIPAPVISLLQLMELKLLAKRC 1080
Query: 564 GITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELL--------L 615
G ++I + ++T M + F+++ + +H + G A++L +
Sbjct: 1081 GFSRIKPEKPNIALETPMEEPAFRLLRQGLPQHLHGRLVYQAGSGSTAKVLARGLGVLPM 1140
Query: 616 ELPREQLLNWIFQ 628
E E+L+NW+ Q
Sbjct: 1141 EKQVEELMNWLKQ 1153
>gi|440754291|ref|ZP_20933493.1| transcription-repair coupling factor [Microcystis aeruginosa TAIHU98]
gi|440174497|gb|ELP53866.1| transcription-repair coupling factor [Microcystis aeruginosa TAIHU98]
Length = 1169
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 272/603 (45%), Positives = 394/603 (65%), Gaps = 10/603 (1%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQFPYEPTPDQKKA 97
AWE K + + +++K+ VDL+ +Y R ++ YP NP E FPY+PT DQ KA
Sbjct: 571 AWEATKARVRKSVKKLAVDLINIYAQRAQKSGFAYPMDNPWQRELEDSFPYQPTADQLKA 630
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHF 156
DV+RDL E + PMDRL+CGDVGFGKTEVA+RAIF V+ G KQ +LAPT +L +QH+
Sbjct: 631 IQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTTGHKQVALLAPTTILTQQHY 689
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF+ YP I VGLL+RF++ +EK++ + +K G L+I+VGT LL V + +LGL
Sbjct: 690 HTLKERFAPYP-INVGLLNRFRTNSEKKDIVQRLKTGELDIVVGTQLLLSKAVEFKDLGL 748
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV QKEKI +FK ++DVLTL+ATPIPRTLY++L+G R+ SLI+TPPP R P
Sbjct: 749 LVIDEEQRFGVNQKEKIKAFKSNIDVLTLTATPIPRTLYMSLSGVREMSLITTPPPSRRP 808
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+THLS+++ + + +AI+ ELDRGGQ+FYV+PRI+G+EE +Q PG I+I HG+
Sbjct: 809 IQTHLSSYNSDVIRTAIRNELDRGGQIFYVVPRIEGIEEKAAAIQGMIPGARISIGHGRM 868
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE TM F G IL+CT IVESGLDI NTII++D Q+FGLAQLYQLRGRVGR
Sbjct: 869 DESELETTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIEDAQKFGLAQLYQLRGRVGR 928
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ +AHA+L YP K L++ A ERL A++E +LG G+QLA +D+ IRG G + G +Q+G
Sbjct: 929 SGVQAHAWLLYPAKGELTETARERLKAIQEFTQLGSGYQLATRDLEIRGAGNLLGAEQSG 988
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +G DL+ EML E+L ++ + V + QID+ + +P++YI+ E M++
Sbjct: 989 QMEAIGFDLYMEMLQEALREIQGQEIPQV--EDTQIDLKLTAFIPNDYISDPEQKMDVYR 1046
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM-V 575
A Q L Q L +YG P + L K + ++ +A +G ++I GK +
Sbjct: 1047 AIATANSQK--TLGQIAADLVDRYGAIPSPVAQLFKVIELKHLAKSLGFSRIKPDGKQHI 1104
Query: 576 GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYA 635
++T M + +K++ + + + ++ + Q+ L + Q L+ + + LA+
Sbjct: 1105 ILETPMEEPAWKLLQEHLPQHI-QSRFVYSPKQVTVRGLGTVKPPQQLDSLLEWLAKCKD 1163
Query: 636 SLP 638
LP
Sbjct: 1164 GLP 1166
>gi|428221058|ref|YP_007105228.1| transcription-repair coupling factor Mfd [Synechococcus sp. PCC 7502]
gi|427994398|gb|AFY73093.1| transcription-repair coupling factor Mfd [Synechococcus sp. PCC 7502]
Length = 1128
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 273/572 (47%), Positives = 381/572 (66%), Gaps = 10/572 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR + +P TL+K++ AW K + +I+K+ +DL+ELY R +Q +P + P
Sbjct: 517 FRSSGDTKP-TLNKMTGK-AWANTTNKVRKSIKKIAIDLLELYARRSQQVGYAFPPDMPW 574
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ KA DV++D+ E + PMDRL+CGDVGFGKTEVA+RA+F ++A
Sbjct: 575 QQEMEDSFPYQPTPDQLKATQDVKQDM-ESDRPMDRLVCGDVGFGKTEVAIRALFKALTA 633
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ+ +LAPT +LA+QH+ + ERF+ YP I + LL+RF+S E++E + + G L+++
Sbjct: 634 GKQSALLAPTTILAQQHYHTMQERFAPYP-INIALLNRFKSTMERKEIIQKLATGELDLV 692
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + + NLGLLV+DEEQRFGV QKEKI SFK VDVLTLSATPIPRTLY++L
Sbjct: 693 VGTHQLLSKEINFKNLGLLVIDEEQRFGVAQKEKIKSFKTEVDVLTLSATPIPRTLYMSL 752
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R IKTHLS + E + SAI+ ELDRGGQVFYV+PRI+G+EE
Sbjct: 753 SGVREMSLITTPPPSRRSIKTHLSRYDPEAIRSAIRQELDRGGQVFYVVPRIEGIEETST 812
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ P +AIAHGQ +LE TM F G IL+CT I+ESGLDI NTII++D
Sbjct: 813 KLREMIPSARLAIAHGQMPEGELETTMLTFNSGEADILVCTTIIESGLDIPRVNTIIIED 872
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q+ GLAQLYQLRGRVGR+ +AHA+LFY K LS+ A +RL A++E LG G+QLA
Sbjct: 873 AQKLGLAQLYQLRGRVGRSGVQAHAWLFYQAKGELSEPARQRLRAIQEFTHLGSGYQLAM 932
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G++ G +Q+G + +G DL+ EML E+++++ + V QID+ +
Sbjct: 933 RDMEIRGVGSLLGAEQSGQMEAIGFDLYMEMLQEAIAEIKGSEIPQV--DDTQIDLPLTA 990
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P+ YI + M AA L Q E R +YG P + + L+K + +++
Sbjct: 991 FIPNNYIPDPDQKMAAYRAL--AAVNSRRELNQILEEWRDRYGTVPAATQQLVKVMELKQ 1048
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMM 589
+A IG ++I GK + ++T M + +K +
Sbjct: 1049 VAKKIGFSRIKPEGKQNIILETKMEEPAWKTL 1080
>gi|86606417|ref|YP_475180.1| transcription-repair coupling factor [Synechococcus sp. JA-3-3Ab]
gi|86554959|gb|ABC99917.1| transcription-repair coupling factor [Synechococcus sp. JA-3-3Ab]
Length = 1156
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 279/611 (45%), Positives = 404/611 (66%), Gaps = 9/611 (1%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQF 86
P L K+S +T WE+ K K K +++K+ DL++LY R +Q+ +P + P EF F
Sbjct: 545 PPALHKMSGST-WEKTKQKVKKSLKKVAFDLLQLYAKRAEQEGYAFPPDSPWQQEFEESF 603
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
PY TPDQ +A +++RD+ E PMDRL+CGDVGFGKTEVA+RAIF V+AGKQ +LA
Sbjct: 604 PYPLTPDQIRAVQEIKRDM-ESPRPMDRLLCGDVGFGKTEVAIRAIFKAVTAGKQVALLA 662
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +L +QH+ + ERF+ YP I+VGLL+RF++ EK+E L +K G L++IVGTH LLG
Sbjct: 663 PTTILTQQHYHTLKERFAPYP-IQVGLLNRFRTPEEKKEILARLKSGELDVIVGTHQLLG 721
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
V + +LGLLV+DEEQRFGV QKEKI K VDVLTL+ATPIPRTLY+AL+G R+ SL
Sbjct: 722 KDVQFRDLGLLVIDEEQRFGVNQKEKIKLLKTQVDVLTLTATPIPRTLYMALSGLREMSL 781
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I TPPP R PIKTHLS ++ E + +AI+ ELDRGGQVFYV+ RI+G+EE L++ PG
Sbjct: 782 IQTPPPSRRPIKTHLSPYNPEVIRTAIRQELDRGGQVFYVVNRIEGIEETSAKLREWVPG 841
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
IAIAHGQ +LE TM F G I IL+CT I+ESGLDI NTI++++ Q+FGLAQ
Sbjct: 842 ARIAIAHGQMPEGELEATMLAFNNGEIDILVCTTIIESGLDIPRVNTILIENAQEFGLAQ 901
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
LYQLRGRVGRA +AHA+LFY + +L+++A +RL A++E +LG G+QLA +DM IRG
Sbjct: 902 LYQLRGRVGRAGIQAHAWLFYREDGILTEEARKRLQAIQEFTQLGSGYQLALRDMEIRGI 961
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
G + G QQ+G + VG DL+ EML E++ ++ + V + QID+NI +P YI
Sbjct: 962 GNLLGTQQSGQLNAVGFDLYLEMLQEAIREIRGQEIPQV--EDTQIDLNITAMIPQSYIP 1019
Query: 507 HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGIT 566
+ M+ + A + L+Q + + ++G P + LL+ + ++ +A +G +
Sbjct: 1020 DEDQKMQAYRQLAAAGSRV--ELLQIAQEWQDRFGPLPKPTQELLRVMELKILARTLGFS 1077
Query: 567 KIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWI 626
+I + + V ++T M + + + +++ + + + ++ ++ L +P Q L +
Sbjct: 1078 RIRPAKEHVLLETPMEEPAWNRLKEALPAHLQ-SRFVYQPGKVTVRGLGMVPAAQQLENL 1136
Query: 627 FQCLAELYASL 637
Q L ++ +L
Sbjct: 1137 LQWLDKMSLAL 1147
>gi|425450357|ref|ZP_18830187.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
7941]
gi|389768841|emb|CCI06150.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
7941]
Length = 1169
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 272/603 (45%), Positives = 394/603 (65%), Gaps = 10/603 (1%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQFPYEPTPDQKKA 97
AWE K + + +++K+ VDL+ +Y R ++ YP NP E FPY+PT DQ KA
Sbjct: 571 AWEATKARVRKSVKKLAVDLINIYAQRAQKSGFAYPMDNPWQRELEDSFPYQPTADQLKA 630
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHF 156
DV+RDL E + PMDRL+CGDVGFGKTEVA+RAIF V+ G KQ +LAPT +L +QH+
Sbjct: 631 IQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTTGHKQVALLAPTTILTQQHY 689
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF+ YP I VGLL+RF++ +EK++ + +K G L+I+VGT LL V + +LGL
Sbjct: 690 HTLKERFAPYP-INVGLLNRFRTNSEKKDIVQRLKTGELDIVVGTQLLLSKAVEFKDLGL 748
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV QKEKI +FK ++DVLTL+ATPIPRTLY++L+G R+ SLI+TPPP R P
Sbjct: 749 LVIDEEQRFGVNQKEKIKAFKSNIDVLTLTATPIPRTLYMSLSGVREMSLITTPPPSRRP 808
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+THLS+++ + + +AI+ ELDRGGQ+FYV+PRI+G+EE +Q PG I+I HG+
Sbjct: 809 IQTHLSSYNSDVIRTAIRNELDRGGQIFYVVPRIEGIEEKAAAIQGMIPGARISIGHGRM 868
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE TM F G IL+CT IVESGLDI NTII++D Q+FGLAQLYQLRGRVGR
Sbjct: 869 DESELETTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIEDAQKFGLAQLYQLRGRVGR 928
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ +AHA+L YP K L++ A ERL A++E +LG G+QLA +D+ IRG G + G +Q+G
Sbjct: 929 SGVQAHAWLLYPAKGELTETARERLKAIQEFTQLGSGYQLATRDLEIRGAGNLLGAEQSG 988
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +G DL+ EML E+L ++ + V + QID+ + +P++YI+ E M++
Sbjct: 989 QMEAIGFDLYMEMLQEALREIQGQEIPQV--EDTQIDLKLTAFIPNDYISDPEQKMDVYR 1046
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM-V 575
A Q L Q L +YG P + L K + ++ +A +G ++I GK +
Sbjct: 1047 AIATANSQK--NLGQIAADLVDRYGAIPSPVAQLFKVIELKHLAKSLGFSRIKPDGKQHI 1104
Query: 576 GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYA 635
++T M + +K++ + + + ++ + Q+ L + Q L+ + + LA+
Sbjct: 1105 ILETPMEEPAWKLLQEHLPQHI-QSRFVYSPKQVTVRGLGAVKPPQQLDSLLEWLAKCKD 1163
Query: 636 SLP 638
LP
Sbjct: 1164 GLP 1166
>gi|116070624|ref|ZP_01467893.1| Transcription-repair coupling factor [Synechococcus sp. BL107]
gi|116066029|gb|EAU71786.1| Transcription-repair coupling factor [Synechococcus sp. BL107]
Length = 1192
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 273/619 (44%), Positives = 396/619 (63%), Gaps = 12/619 (1%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFA 83
++ P LS++ AW + K + K A++K+ +DL++LY R + +P + P E
Sbjct: 557 SESPPQLSRMGGA-AWTKAKDRAKKAVRKVALDLVKLYAERQQSNGFAFPPDGPWQTELE 615
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
FPYEPTPDQ K+ DV+RD+ ER PMDRL+CGDVGFGKTEVA+RAIF ++AGKQ
Sbjct: 616 ESFPYEPTPDQLKSTTDVKRDM-ERAEPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVA 674
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ E++ L+ +K G ++ +VGTH
Sbjct: 675 MLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTTTERKSILEGLKQGTIDAVVGTHQ 733
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LL + LGLLVVDEEQRFGV QKEKI + VDVLTLSATPIPRTLY++L+G R+
Sbjct: 734 LLSKGTSFQQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGVRE 793
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
SLI+TPPP R PIKTHL++ E V SAI+ ELDRGGQVFYV+PR++G+E+ L+
Sbjct: 794 MSLITTPPPLRRPIKTHLASLDPEAVRSAIRQELDRGGQVFYVVPRVEGIEDVATGLRAM 853
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
PG+ + +AHGQ +LE M F G +++CT IVESGLDI NTI+++D +FG
Sbjct: 854 LPGLKLLVAHGQMAEGELESAMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFG 913
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
LAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG G+QLA +DM I
Sbjct: 914 LAQLYQLRGRVGRSGIQAHAWLFYPGNASLSDNARQRLRAIQEFAQLGSGYQLAMRDMEI 973
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSE 503
RG G + G +Q+G + +G DL+ EML ESL+++ + SV Q+D+ + +P++
Sbjct: 974 RGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPSV--DDTQVDLPVTAFVPAD 1031
Query: 504 YINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADI 563
+I + + A A + L++ +YG P +++ LL+ + ++ +A
Sbjct: 1032 WITDPDEKIAAYRAAADCASSE--ALVELAAGWADRYGAIPAAVQSLLQLMELKMLAKRC 1089
Query: 564 GITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK----AELLLELPR 619
G ++I + ++T M + F+++ + +H + G ++ A L LP
Sbjct: 1090 GFSRIKPEKPNIVLETPMEEPAFRLLRQGLPQHLHGRFVYQAGSGLQHKALARGLGALPM 1149
Query: 620 EQLLNWIFQCLAELYASLP 638
E+ L + L + A +P
Sbjct: 1150 EKQLEQLMDWLKLMSAQIP 1168
>gi|218440658|ref|YP_002378987.1| transcription-repair coupling factor [Cyanothece sp. PCC 7424]
gi|218173386|gb|ACK72119.1| transcription-repair coupling factor [Cyanothece sp. PCC 7424]
Length = 1168
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 275/620 (44%), Positives = 403/620 (65%), Gaps = 17/620 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFA 83
+ P L K++ T WE+ K K + ++K+ VDL+ LY R +Q+ YP + P E
Sbjct: 558 SNTPPQLDKMTGKT-WEQTKQKVRKTVKKLAVDLINLYAKRAQQEGFAYPDDSPWQQELE 616
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQA 142
FPY+PTPDQ KA +V+RD+ E PMDRL+CGDVGFGKTEVA+RAIF V++G KQ
Sbjct: 617 DSFPYQPTPDQIKAIQEVKRDMMN-ERPMDRLVCGDVGFGKTEVAVRAIFKAVTSGNKQV 675
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
LAPT +L +QH+ + ERF+ YP I +GLL+RF++ +E + L + G L+I+VGTH
Sbjct: 676 AFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTPSENRDILQRLATGELDIVVGTH 734
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL ++V + +LGLLV+DEEQRFGV QKEKI + K VDVLTL+ATPIPRTLY++L+G R
Sbjct: 735 QLLSNKVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLTATPIPRTLYMSLSGVR 794
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
+ SLI+TPPP R PIKTHL+ ++ + + +AI+ ELDRGGQ+FYV+PR++G+EE ++
Sbjct: 795 EMSLITTPPPSRRPIKTHLTPYNPDALRTAIRNELDRGGQIFYVVPRVEGIEEVAAEIRD 854
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P IAIAHGQ +LE TM F G IL+CT I+ESGLDI NTIIV+D Q+F
Sbjct: 855 MIPTARIAIAHGQMSVSELEPTMLAFNNGEADILVCTTIIESGLDIPRVNTIIVEDAQKF 914
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR+ +AHA+L YP K+ L++ A +RL AL+E +LG G+QLA +DM
Sbjct: 915 GLSQLYQLRGRVGRSGIQAHAWLVYPHKAALTETARQRLRALQEFTQLGSGYQLATRDME 974
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G + G +Q+G + +G DL+ EML E++ ++ + V + QID+ + +P+
Sbjct: 975 IRGVGNLLGAEQSGQMEAIGFDLYMEMLQEAIREIQGQEIPKV--EDTQIDLKLTAFIPT 1032
Query: 503 EYINHLENPME---MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 559
+YI M+ + A AE L Q L +YG P +E LL+ + ++++
Sbjct: 1033 DYITDANQKMDAYRTIATANSPAE-----LKQIATDLCDRYGALPSPVEQLLQVIELKQL 1087
Query: 560 AADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELP 618
A +G ++I GK V ++T M + +K++ +++ + R+ + ++ L L
Sbjct: 1088 AKSLGFSRIKPDGKQHVILETPMEEPAWKLLEENLPKHL-RSRFVYSLKKVTVRGLGVLK 1146
Query: 619 REQLLNWIFQCLAELYASLP 638
++ L + + L ++ +LP
Sbjct: 1147 PKKQLESLIEWLGKMKGALP 1166
>gi|318041677|ref|ZP_07973633.1| transcription-repair coupling factor [Synechococcus sp. CB0101]
Length = 1185
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 273/613 (44%), Positives = 397/613 (64%), Gaps = 16/613 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFA 83
T++P L+++ T AW + K + + A++K+ +DL++LY R + +P + P +E
Sbjct: 550 TEQPPDLNRMGGT-AWSKAKERARKAVRKVALDLVKLYAERHQAAGFCFPADGPWQSELE 608
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
FPYEPTPDQ KA DV+RD+ E+ PMDRL+CGDVGFGKTEVA+RAIF V+AGKQ
Sbjct: 609 ESFPYEPTPDQLKAIADVKRDM-EKPQPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVA 667
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ E++ + + G ++++VGTH
Sbjct: 668 MLAPTTVLAQQHWRSLSERFAPYP-IKVSLLNRFRTAGERKAIQEGLGEGTVDVVVGTHQ 726
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LLG + LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIPRTLY++L+G R+
Sbjct: 727 LLGKGTAFKQLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSLSGVRE 786
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
SLI+TPPP R PIKTHL+A +E V SAI+ ELDRGGQ+FYV+PR++G+E+ + L+
Sbjct: 787 MSLITTPPPLRRPIKTHLAALDEEAVRSAIRQELDRGGQIFYVVPRVEGIEDVAEGLRLM 846
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
PG+ + +AHGQ +LE M F G +++CT IVESGLDI NTI+++D +FG
Sbjct: 847 VPGLRLLVAHGQMAEGELESAMVAFNAGEADLMLCTTIVESGLDIPRVNTILIEDAHKFG 906
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
LAQLYQLRGRVGR+ +AHA+LFYP + LS+ A +RL A++E +LG G+QLA +DM I
Sbjct: 907 LAQLYQLRGRVGRSGIQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGSGYQLAMRDMEI 966
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSE 503
RG G + G +Q+G + +G DL+ EML ESL+++ + +V QID+ I +P +
Sbjct: 967 RGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPAV--DDTQIDLPITAFIPGD 1024
Query: 504 YINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADI 563
+I + M A D L+Q +YG P + LL+ + ++ +A
Sbjct: 1025 WIADNDEKMAAYRAAADCGSPD--SLLQLATDWVDRYGAIPAPVISLLQLMELKLLAKRC 1082
Query: 564 GITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELL--------L 615
G ++I + ++T M + F+++ + +H + G +++L +
Sbjct: 1083 GFSRIKPEKPNIALETPMEEPAFRLLRQGLPQHLHGRLMFQAGSGTTSKVLARGLGVLPM 1142
Query: 616 ELPREQLLNWIFQ 628
E E+L+NW+ Q
Sbjct: 1143 EKQVEELMNWLKQ 1155
>gi|33865711|ref|NP_897270.1| transcriptional-repair coupling factor [Synechococcus sp. WH 8102]
gi|33632881|emb|CAE07692.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 8102]
Length = 1192
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 275/620 (44%), Positives = 403/620 (65%), Gaps = 14/620 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFA 83
++ P LSK+ AW + K + K A++K+ +DL++LY R + +P + P E
Sbjct: 557 SETPPQLSKMGGA-AWTKAKERAKKAVRKVAMDLVKLYAERHQANGFAFPSDGPWQNELE 615
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
FPYEPTPDQ KA DV+RD+ E+ PMDRL+CGDVGFGKTEVA+RAIF ++AGKQ
Sbjct: 616 ESFPYEPTPDQLKATADVKRDM-EKAEPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVA 674
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ +E++ L+ +K G ++ +VGTH
Sbjct: 675 MLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTASERKTILEGLKGGTIDAVVGTHQ 733
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LLG + LGLLVVDEEQRFGV QKEKI + VDVLTLSATPIPRTLY++L+G R+
Sbjct: 734 LLGKGASFQQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGVRE 793
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
SLI+TPPP R PIKTHL+A E V SAI+ ELDRGGQVFYV+PR++G+E+ L++
Sbjct: 794 MSLITTPPPLRRPIKTHLAALDPEAVRSAIRQELDRGGQVFYVVPRVEGIEDVAAGLREM 853
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
PG+ + +AHGQ +LE M F G +++CT IVESGLDI NTI+++D +FG
Sbjct: 854 LPGLKLLVAHGQMAEGELESAMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFG 913
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
LAQLYQLRGRVGR+ +AHA+LFYP LSD A +RL A++E +LG G+QLA +DM I
Sbjct: 914 LAQLYQLRGRVGRSGIQAHAWLFYPGNGSLSDNARQRLRAIQEFAQLGSGYQLAMRDMEI 973
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSE 503
RG G + G +Q+G + +G DL+ EML ESL+++ + SV Q+D+ + +P++
Sbjct: 974 RGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPSV--DDTQVDLPVTAFVPAD 1031
Query: 504 YINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
+I +P E + AA+ + L++ +YG P +++ LL+ + ++ +A
Sbjct: 1032 WIT---DPDEKIAAYRAAADCRSGEALVELAAGWADRYGALPAAVQSLLQLMELKLLAKR 1088
Query: 563 IGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLE----LP 618
G+ +I + ++T M + F+++ + +H + G ++ +++ LP
Sbjct: 1089 CGVARIKPEKPNIVLETPMEEPAFRLLRQGLPQHLHGRLVYQSGKALQHKVMARGLGVLP 1148
Query: 619 REQLLNWIFQCLAELYASLP 638
++ L + + L + A +P
Sbjct: 1149 MDKQLEQLMEWLRLMAAQIP 1168
>gi|307154808|ref|YP_003890192.1| transcription-repair coupling factor [Cyanothece sp. PCC 7822]
gi|306985036|gb|ADN16917.1| transcription-repair coupling factor [Cyanothece sp. PCC 7822]
Length = 1169
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/609 (44%), Positives = 404/609 (66%), Gaps = 16/609 (2%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKA 97
AWE+ K K + +++K+ VDL+ LY R +Q+ +P + P E FPY+PTPDQ KA
Sbjct: 571 AWEQTKQKVRKSVKKLAVDLINLYAKRAQQEGFSFPTDSPWQQELEDSFPYQPTPDQLKA 630
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHF 156
+V+RDL E + PMDRL+CGDVGFGKTEVA+RAIF V++G KQ LAPT +L +QH+
Sbjct: 631 VQEVKRDL-ESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGNKQVAFLAPTTILTQQHY 689
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF+ YP I +GLL+RF++ +E ++ L + G L+I+VGTH LL +++ + +LGL
Sbjct: 690 HTLKERFAPYP-INIGLLNRFRTPSENKDILQRLSTGELDIVVGTHQLLSNKIKFKDLGL 748
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV QKEKI + K VDVLTL+ATPIPRTLY++L+G R+ SLI+TPPP R P
Sbjct: 749 LVIDEEQRFGVNQKEKIKTLKTQVDVLTLTATPIPRTLYMSLSGVREMSLITTPPPSRRP 808
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
IKTHLS ++ + + +AI+ ELDRGGQ+FYV+PR++G+EE ++Q P IAIAHGQ
Sbjct: 809 IKTHLSPYNSDVIRTAIRNELDRGGQIFYVVPRVEGIEEVAAEIRQMVPTARIAIAHGQM 868
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE TM F G +L+CT I+ESGLDI NTIIV+D Q+FGL+QLYQLRGRVGR
Sbjct: 869 DVSELETTMLAFNNGEADVLVCTTIIESGLDIPRVNTIIVEDAQKFGLSQLYQLRGRVGR 928
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ +AHA+L YP K+ L++ A +RL AL+E +LG G+QLA +DM IRG G + G +Q+G
Sbjct: 929 SGIQAHAWLVYPHKAALTETARQRLRALQEFTQLGSGYQLATRDMEIRGVGNLLGAEQSG 988
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPME--- 513
+ +G DL+ EML +++ ++ + V + QID+ + +P++YI+ + M+
Sbjct: 989 QMEAIGFDLYMEMLQDAIREIQGQEIPKV--EDTQIDLKLTAFIPADYISDINQKMDAYR 1046
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
+ A A+ L Q L +YG P +E LL+ + ++++A +G ++I GK
Sbjct: 1047 TIATANSPAD-----LKQIAADLCDRYGALPSPVEQLLQVIELKQLAKSLGFSRIKPDGK 1101
Query: 574 M-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAE 632
V ++T M + +K++ +++ + + + ++ L + ++ L + + L +
Sbjct: 1102 QHVVLETPMEEPAWKLLEENLPKHL-QGRFVYSPKKVTVRGLGVVKPKKQLESLIEWLEK 1160
Query: 633 LYASLPALI 641
+ +LP +I
Sbjct: 1161 MKGALPEII 1169
>gi|87302159|ref|ZP_01084984.1| transcription-repair coupling factor [Synechococcus sp. WH 5701]
gi|87283084|gb|EAQ75040.1| transcription-repair coupling factor [Synechococcus sp. WH 5701]
Length = 1187
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 278/626 (44%), Positives = 406/626 (64%), Gaps = 15/626 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR + T P L++++ AW R K + + A++K+ +DL++LY R + P+P + P
Sbjct: 548 FRAS-TDSPPELNRMAGV-AWTRAKERARKAVRKVAMDLVKLYAERQQAAGFPFPADGPW 605
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPYEPTPDQ KA +V+RD+ E+ PMDRL+CGDVGFGKTEVA+RA+F V+A
Sbjct: 606 QGELEDSFPYEPTPDQVKAIAEVKRDM-EKPEPMDRLVCGDVGFGKTEVAIRAVFKAVTA 664
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT VLA+QH+ +SERF+ YP +KV LL+RF++ AE++ LD ++ G ++++
Sbjct: 665 GKQCALLAPTTVLAQQHWRTLSERFAPYP-LKVALLNRFRTTAERKTILDGLRDGTVDVV 723
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIPRTLY++L
Sbjct: 724 VGTHQLLSKGTSFEKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSL 783
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL+A +E V SAI+ ELDRGGQVFYV+PR++G+EE
Sbjct: 784 SGVREMSLITTPPPLRRPIKTHLAALDEEAVRSAIRQELDRGGQVFYVVPRVEGIEEVAG 843
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ PG+ + +AHGQ +LE M F G +++CT I+ESGLDI NTI+V+D
Sbjct: 844 QLREMLPGLKLLVAHGQMGEGELESAMVAFNAGEADVMLCTTIIESGLDIPRVNTILVED 903
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGLAQLYQLRGRVGR+ +AHA+LFYP + LS+ A +RL A++E +LG G+QLA
Sbjct: 904 AHKFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGSGYQLAM 963
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML ESL+++ + V + QID+ I
Sbjct: 964 RDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPVV--EETQIDLPITA 1021
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P+++I + M A ++ L+Q +YG P + LL+ + ++
Sbjct: 1022 FIPADWIPESDEKMAAYRAAADCRTRE--ELVQLAADWVDRYGALPSPVASLLQLMELKL 1079
Query: 559 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD-----QIKAEL 613
+A G ++I + ++T M + F+++ + +H L ++G ++ A
Sbjct: 1080 LARRCGFSRIRLEKPNIVLETPMEEPAFRLLRQGLPQHLH-GRLVYQGGGGSTAKVLARG 1138
Query: 614 LLELPREQLLNWIFQCLAELYASLPA 639
L L E+ L+ + + LA + +P
Sbjct: 1139 LNVLAAERQLDMLKEWLAAMAEQIPG 1164
>gi|116074923|ref|ZP_01472184.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916]
gi|116068145|gb|EAU73898.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916]
Length = 1194
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 275/626 (43%), Positives = 403/626 (64%), Gaps = 15/626 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPA 78
+R N + P LSK+ + AW + K + A++K+ +DL++LY R + +P P
Sbjct: 555 YRAN-SDSPPQLSKMGGS-AWVKAKERASKAVRKVALDLVKLYAERHQAPGFAFPIDGPW 612
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPYEPTPDQ KA +V+RD+ E+ PMDRL+CGDVGFGKTEVA+RAIF ++A
Sbjct: 613 QTELEDSFPYEPTPDQLKATAEVKRDM-EKSQPMDRLVCGDVGFGKTEVAIRAIFKAITA 671
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ E++ L+ +K G ++ +
Sbjct: 672 GKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTAGERKTILEGLKKGTIDAV 730
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL ++ LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIPRTLY++L
Sbjct: 731 VGTHQLLSKSTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSL 790
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL+A +E V SAI+ ELDRGGQVFYV+PR++G+EE
Sbjct: 791 SGVREMSLITTPPPLRRPIKTHLAALDEEAVRSAIRQELDRGGQVFYVVPRVQGIEEVAG 850
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ PG+ + +AHGQ +LE M F G +++CT IVESGLDI NTI+++D
Sbjct: 851 KLREMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRVNTILIED 910
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGLAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG G+QLA
Sbjct: 911 AHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGDASLSDAARQRLRAIQEFAQLGSGYQLAM 970
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML ESL+++ + +V Q+D+ +
Sbjct: 971 RDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPAV--DDTQVDLQVTA 1028
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P+++I + M A + Q L++ ++G P ++ LL+ + ++
Sbjct: 1029 FIPADWITDADEKMGAYRSAGEC--QSAEALVELAADWADRFGALPGPVQSLLQLMELKL 1086
Query: 559 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD-----QIKAEL 613
+A G +I + ++T M + F+++ + +H L ++G ++ A
Sbjct: 1087 LAKRCGFARIRPEKPNIALETPMEEPAFRLLRQGLPQHLH-GRLVYQGGSGSTAKVLARG 1145
Query: 614 LLELPREQLLNWIFQCLAELYASLPA 639
L LP ++ L + L+++ A +P
Sbjct: 1146 LGVLPMDKQLEELKTWLSQMAAQIPG 1171
>gi|126657369|ref|ZP_01728528.1| transcription-repair coupling factor [Cyanothece sp. CCY0110]
gi|126621356|gb|EAZ92068.1| transcription-repair coupling factor [Cyanothece sp. CCY0110]
Length = 1160
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 271/607 (44%), Positives = 395/607 (65%), Gaps = 10/607 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQFPYEPTPDQKKAF 98
W++ K + + I+K+ VDL+ LY R K YP P E FPY+PTPDQ KA
Sbjct: 561 WQKSKQRVRKNIKKLAVDLINLYAKRAKNVGFTYPLDTPWQQELEDSFPYQPTPDQLKAI 620
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHFD 157
DV+ DL E + PMDRL+CGDVGFGKTEVA+RAIF V++G KQ LAPT +L +QH+
Sbjct: 621 QDVKIDL-ESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGHKQVAFLAPTTILTQQHYH 679
Query: 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217
+ ERF+ YP I +GLL+RF++ +EK+E +D + G L+I+VGT LLG + + +LGLL
Sbjct: 680 TLKERFAPYP-INIGLLNRFRTNSEKKEIIDRLATGELDIVVGTQQLLGKSIKFKDLGLL 738
Query: 218 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 277
VVDEEQRFGV QKEKI K VDVLTL+ATPIPRTLY++L+G R+ SLI+TPPP R PI
Sbjct: 739 VVDEEQRFGVNQKEKIKDMKSHVDVLTLTATPIPRTLYMSLSGIREMSLITTPPPSRRPI 798
Query: 278 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 337
KTHLS ++ + V +AI+ ELDRGGQVFYV+PR++G+EE L++ P IAI HGQ
Sbjct: 799 KTHLSRYNPDVVRTAIRNELDRGGQVFYVVPRVEGIEEVAAELKKMVPSARIAIGHGQMN 858
Query: 338 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 397
LE TM F G IL+CT IVESGLDI NTII++D Q+FGLAQLYQLRGRVGRA
Sbjct: 859 VNDLEMTMLSFNNGDADILVCTTIVESGLDIPRVNTIIIEDAQKFGLAQLYQLRGRVGRA 918
Query: 398 DKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 457
+AHA+L YP K+ L++ A +RL AL+E +LG G+QLA +DM IRG G + G +Q+G
Sbjct: 919 GIQAHAWLLYPSKAQLTETARKRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSGQ 978
Query: 458 VGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE 517
+ ++G +L+ +ML E++ ++ + V + Q+D+ + +P++YI +E M
Sbjct: 979 MESIGFELYMDMLQEAIKEIQGQEIPKV--EDTQVDLQLTAFIPTDYIPDMEQKMSAYRA 1036
Query: 518 AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM-VG 576
A + L Q +YGK P ++ LL+ + ++++A +G ++I GK +
Sbjct: 1037 IAVANSKK--ELAQIAAEWNDRYGKLPIPVQQLLQVIELKQLAKSLGFSRIKPEGKQNIV 1094
Query: 577 MKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYAS 636
++T M + +K++ +++ + + R+ + ++ L + ++ L + + L ++ +
Sbjct: 1095 LETPMEEPAWKLLEENLPAHL-RSRFVYTPKKVTVRGLGVMKPQKQLESLLEWLGKMQDA 1153
Query: 637 LPALIKY 643
+P +Y
Sbjct: 1154 IPVTSEY 1160
>gi|56750236|ref|YP_170937.1| transcription-repair coupling factor [Synechococcus elongatus PCC
6301]
gi|56685195|dbj|BAD78417.1| transcription-repair coupling factor [Synechococcus elongatus PCC
6301]
Length = 1153
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 269/581 (46%), Positives = 382/581 (65%), Gaps = 10/581 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
+R +RP LS ++ + AWE+ K K + A++K+ VDL++LY R +Q+ YP + P
Sbjct: 536 YRGMGGERPE-LSSMT-SKAWEKTKAKARKAVRKVAVDLLKLYAQRSQQEGHAYPPDQPW 593
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PT DQ KA V+RD+ E PMDRL+CGDVGFGKTEVA+RAIF V+A
Sbjct: 594 QQELEESFPYQPTADQLKAVEAVKRDM-ESPQPMDRLVCGDVGFGKTEVAVRAIFKAVTA 652
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERF+ YP I++GLL+RF++ +E++ + G L+++
Sbjct: 653 GKQVALLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRTASERQNIQQRLATGELDVV 711
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGT LL + +LGLLVVDEEQRFGV QKEKI + K VDVLTLSATPIPRTLY+AL
Sbjct: 712 VGTQQLLSKGTQFRDLGLLVVDEEQRFGVNQKEKIKALKTQVDVLTLSATPIPRTLYMAL 771
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL + E V +AI E+DRGGQVFYV+PR++G+E
Sbjct: 772 SGVREMSLITTPPPSRRPIKTHLMPYDLEAVRTAISQEIDRGGQVFYVVPRVEGIEAIAT 831
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ+ P + IA+AHGQ +LE TM F ++ICT I+ESGLDI NTI+++D
Sbjct: 832 RLQEMLPSLRIAVAHGQMPEGELEATMLAFNNNEADVMICTTIIESGLDIPRVNTILIED 891
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q+FGL+QLYQLRGRVGRA +AHA+LFYP +++LSDQA +RL A++E +LG G+QLA
Sbjct: 892 AQRFGLSQLYQLRGRVGRAGIQAHAWLFYPGETVLSDQARQRLRAIQEFTQLGSGYQLAM 951
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G +Q+G + +G DL+ EML ESL ++ + V QID+++
Sbjct: 952 RDLEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLQEIRGQDIPQV--DDTQIDLSLTA 1009
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI ++ M A+ Q L+Q +YG P S + LL+ + +++
Sbjct: 1010 FIPADYIPDIDAKMSAYRAV--ASAQTPADLLQIAADWSDRYGSLPASAQQLLRVMELKQ 1067
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVH 598
+A +G + K V ++T M +K + + + S +
Sbjct: 1068 VAKSLGFARTRTESKQHVILETPMEAPAWKRLHEKLPSNLQ 1108
>gi|428218607|ref|YP_007103072.1| transcription-repair coupling factor [Pseudanabaena sp. PCC 7367]
gi|427990389|gb|AFY70644.1| transcription-repair coupling factor [Pseudanabaena sp. PCC 7367]
Length = 1179
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 274/619 (44%), Positives = 399/619 (64%), Gaps = 11/619 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR PR L+K++ AW K K + AI+K+ +DL++LY R +Q +P + P
Sbjct: 560 FRRTSEGAPR-LNKMTGK-AWANTKNKVRKAIKKIAIDLLKLYAQRAQQMGFAFPVDMPW 617
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ KA DV++D+ E + PMDRL+CGDVGFGKTEVA+RAIF ++
Sbjct: 618 QEELEDSFPYQPTPDQLKAIQDVKQDM-ESDRPMDRLVCGDVGFGKTEVAVRAIFKALTT 676
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ+ +LAPT +LA+QH+ ERF+ YP IKV LL+RF++ E++E + +K G ++++
Sbjct: 677 GKQSALLAPTTILAQQHYHTFQERFAPYP-IKVALLNRFKTANERKEIIQKLKTGEIDLV 735
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +L V + +LGLLVVDEEQRFGV QKEKI + K VDVLTL+ATPIPRTLY++L
Sbjct: 736 IGTHQILSKEVKFKDLGLLVVDEEQRFGVAQKEKIKTLKTEVDVLTLTATPIPRTLYMSL 795
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R IKTHLS ++ E V +AI+ ELDRGGQ+FYV+PRI+G+E+ M
Sbjct: 796 SGVREMSLIATPPPSRRAIKTHLSRYNDETVRTAIRQELDRGGQIFYVVPRIEGMEQIMT 855
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+++ P +AIAHGQ +LE TM F G +LICT I+ESGLDI NTII++D
Sbjct: 856 RIREMIPSARLAIAHGQMPESELESTMLAFNSGEADVLICTTIIESGLDIPRVNTIIIED 915
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q+FGLAQLYQLRGRVGRA +AHA+LFY K L+ A +RL A++E LG G+QLA
Sbjct: 916 AQKFGLAQLYQLRGRVGRAGVQAHAWLFYQPKGELTPPAYKRLRAIQEFTHLGSGYQLAM 975
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + VG DL+ EML E+++++ +I V Q+D+ I
Sbjct: 976 RDMEIRGVGNLLGAEQSGQINVVGFDLYMEMLQEAINEIRGSEIIEV--DDTQVDLPITA 1033
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++Y+ + M AA L E R +YG P + L+K + ++
Sbjct: 1034 FIPADYMPDADQKMSAYRAV--AAVNSRRELASILEEWRDRYGNVPQPAQQLIKVMELKL 1091
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A IG ++I K V ++T + + +K++ + + +H + ++ ++ L +
Sbjct: 1092 VAKKIGFSRIRPEHKQHVVLETKLEEPAWKILQQRLPAHLH-SRFVYQPGKVTVRGLAVM 1150
Query: 618 PREQLLNWIFQCLAELYAS 636
P + L+ + + + A+
Sbjct: 1151 PTAKQLDSLIEWFELMQAT 1169
>gi|170077902|ref|YP_001734540.1| transcription-repair coupling factor [Synechococcus sp. PCC 7002]
gi|169885571|gb|ACA99284.1| Transcription-repair coupling factor (TRCF) [Synechococcus sp. PCC
7002]
Length = 1162
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 277/624 (44%), Positives = 401/624 (64%), Gaps = 18/624 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
+R RP L ++ T WE+ K K + +++K+ VDL+++Y R + K YP + P
Sbjct: 546 YRHTAKGRPE-LHRMGGKT-WEKTKAKVRKSVKKLAVDLLKIYAQRAEMKGITYPSDAPW 603
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+ TPDQ KA D++RDL E + PMDRL+CGDVGFGKTEVA+RAIF VV+
Sbjct: 604 QQEMEDSFPYQATPDQLKAVQDIKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKVVTG 662
Query: 139 G-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 197
G KQ +LAPT +L +QH+ + ERFS YP I +GLL+RF++ +E+++ L+ + G L+I
Sbjct: 663 GHKQVALLAPTTILTQQHYHTLKERFSPYP-INIGLLNRFRTASERKDILERLHKGELDI 721
Query: 198 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 257
+VGT LLG V + +LGLLVVDEEQRFGV QKEKI + K VDVLTLSATPIPRTLY++
Sbjct: 722 VVGTQQLLGKDVQFKDLGLLVVDEEQRFGVNQKEKIKALKTKVDVLTLSATPIPRTLYMS 781
Query: 258 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
L+G R+ SLI+TPPP R PI+TH+S + E + +AI+ ELDRGGQ+FYV+PR++G+E
Sbjct: 782 LSGIREMSLITTPPPSRRPIQTHVSRHNPEIIRTAIRNELDRGGQIFYVVPRVEGIETIA 841
Query: 318 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 377
LQ+ P +AIAHGQ LE TM F G IL+CT IVESGLDI NTIIV+
Sbjct: 842 TQLQEMIPSARVAIAHGQMNEADLETTMLTFNNGEADILLCTTIVESGLDIPRVNTIIVE 901
Query: 378 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 437
D Q+FGL+QLYQLRGRVGR+ +AHA+L YP K L+++A +RL AL+E +LG G+QLA
Sbjct: 902 DAQKFGLSQLYQLRGRVGRSGIQAHAWLLYPSKGELTEKARKRLRALQEFSQLGSGYQLA 961
Query: 438 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 497
+DM IRG G + G +Q+G + +G DL+ EML + +S++ + V Q+D+ +
Sbjct: 962 MRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLQDCISEIRGQEIPQV--DDCQVDLRLT 1019
Query: 498 PRLPSEYINHLENPME---MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+PS YI + ++ ++ +A E LMQ +YGK P S+E LL+ +
Sbjct: 1020 AFIPSNYITDGDQKLDAYRLITQANSKLE-----LMQIAADWGDRYGKLPPSVEQLLQVI 1074
Query: 555 YVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL 613
++ +A +G +I GK + ++T M + ++ + + S + ++ + ++
Sbjct: 1075 ELKMIAKSLGFARIKPEGKQNIVLETPMEEPAWQRFAEKLPSHL-QSRFVYTSKKVTVRG 1133
Query: 614 LLELPREQLLNWIFQCLAELYASL 637
L + +Q L+ + + L + L
Sbjct: 1134 LGAMKPQQQLDSLIEWLGRMQGVL 1157
>gi|428779387|ref|YP_007171173.1| transcription-repair coupling factor Mfd [Dactylococcopsis salina PCC
8305]
gi|428693666|gb|AFZ49816.1| transcription-repair coupling factor Mfd [Dactylococcopsis salina PCC
8305]
Length = 1160
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 272/604 (45%), Positives = 389/604 (64%), Gaps = 15/604 (2%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQFPYEPTPDQKKA 97
+W+ K K + A++K+ VDL++LY R + YP++ E FPY+ TPDQ KA
Sbjct: 560 SWQNTKNKVEKAVKKVAVDLLDLYAKRSQLSGYAYPQDTVWQQELEDSFPYQATPDQLKA 619
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157
DV+RDL E + PMDRL+CGDVGFGKTEVA+RAIF +V +GKQ LAPT +L +QH+
Sbjct: 620 VQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAIFKIVMSGKQIAFLAPTTILTQQHYH 678
Query: 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217
+ ERF+ YP I +GLL+RF++ E+++ L + G L+I+VGTH LL V Y +LG+L
Sbjct: 679 TLKERFAPYP-INIGLLNRFRTSNERKDILKRLATGELDIVVGTHQLLNKSVKYKDLGML 737
Query: 218 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 277
V+DEEQRFGV QKEKI + K VDVLTL+ATPIPRTLY++L+G R+ SLI+TPPP R PI
Sbjct: 738 VIDEEQRFGVNQKEKIKAMKTEVDVLTLTATPIPRTLYMSLSGIREMSLITTPPPSRRPI 797
Query: 278 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 337
KTHLS + E + +AI+ ELDRGGQVFYV+PR++G+EE L++ PG I+I HGQ
Sbjct: 798 KTHLSPYDTEAIRTAIRNELDRGGQVFYVVPRVEGIEETAGKLREMVPGARISIGHGQME 857
Query: 338 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 397
+LE TM F G IL+CT I+ESGLDI NTI+V+D Q+FGL+QLYQLRGRVGR+
Sbjct: 858 EAELESTMLTFNNGDADILVCTTIIESGLDIPRVNTIVVEDSQKFGLSQLYQLRGRVGRS 917
Query: 398 DKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 457
+AHA+L YP +S LSD A +RL AL+E +LG G+QLA +D+ IRG G + G +Q+G
Sbjct: 918 GVQAHAWLLYPKQSSLSDTAKKRLRALQEFTQLGSGYQLAMRDLEIRGVGELLGAKQSGQ 977
Query: 458 VGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPME---M 514
+ VG DL+ ML E++ +V + V + QID+ + +PS YI + M+
Sbjct: 978 MNAVGFDLYMSMLQEAIQEVQGQDIPQV--EDTQIDLKLTAFVPSNYITDPDQKMDAYRT 1035
Query: 515 VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM 574
V A E D Q R +YG+ P + LL+ + ++++ +G ++I GK
Sbjct: 1036 VTMANSKKELD-----QIRNDWRDRYGELPAPVNQLLQIMELKQITKSLGFSRIKPEGKQ 1090
Query: 575 -VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAEL 633
+ ++T M + +K + + + ++ + + ++ L L +Q ++ + L +L
Sbjct: 1091 HIVLETKMEEPAWKRVQEHLPKKIA-SRFVYSKGKVTVRGLGVLKTQQQIDNLINWLGQL 1149
Query: 634 YASL 637
SL
Sbjct: 1150 RESL 1153
>gi|427702001|ref|YP_007045223.1| transcription-repair coupling factor Mfd [Cyanobium gracile PCC 6307]
gi|427345169|gb|AFY27882.1| transcription-repair coupling factor Mfd [Cyanobium gracile PCC 6307]
Length = 1196
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 266/582 (45%), Positives = 385/582 (66%), Gaps = 13/582 (2%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAA 84
P L+++ T AW + K + + A+ K+ +DL++LY R K P + P P E
Sbjct: 564 PPELNRMGGT-AWTKAKERARKAVAKVAMDLVKLYAER--HKAPGFAFPPDGPWQGELED 620
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
FPY+PTPDQ KA +DV+RD+ ER+ PMDRL+CGDVGFGKTEVA+RAIF V+AGKQ +
Sbjct: 621 SFPYDPTPDQLKAIVDVKRDM-ERDQPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQCAL 679
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
LAPT VLA+QH+ +SERF+ YP +KV LL+RF++ AE++ LD + G+ +++VGTH L
Sbjct: 680 LAPTTVLAQQHWRTLSERFAPYP-LKVALLNRFRTAAERKTILDDLAKGNTDVVVGTHQL 738
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264
LG + LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIPRTLY++L+G R+
Sbjct: 739 LGKGTAFRQLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSLSGVREM 798
Query: 265 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 324
SLI+TPPP R PIKTHL++ +E V SAI+ ELDRGGQVFYV+PR++G+EE L+
Sbjct: 799 SLITTPPPLRRPIKTHLASLDEEAVRSAIRQELDRGGQVFYVVPRVEGIEEVAGQLRAML 858
Query: 325 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 384
PG+ + +AHGQ +LE M F G +++CT I+ESGLDI NTI+V+D +FGL
Sbjct: 859 PGLRLQVAHGQMPEGELESAMVAFNAGEADVMLCTTIIESGLDIPRVNTILVEDAHRFGL 918
Query: 385 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIR 444
AQLYQLRGRVGR+ +AHA+LFYP + LS+ A +RL A++E +LG G+QLA +DM IR
Sbjct: 919 AQLYQLRGRVGRSGIQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGSGYQLAMRDMEIR 978
Query: 445 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEY 504
G G + G +Q+G + +G DL+ EML + L+++ + +V QID+ + +P+++
Sbjct: 979 GVGNLLGVEQSGQMEAIGFDLYMEMLQDCLAEIQGQDIPAV--DETQIDLPVTAFIPADW 1036
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
I + M A + + L++ +YG P ++ LL+ + ++ +A G
Sbjct: 1037 ITEADEKMAAYRAAAECGGKA--ALVELAAGWADRYGPIPAPVQSLLELMELKLLARRCG 1094
Query: 565 ITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 606
++I + ++T M + F+ + ++ +H L ++G
Sbjct: 1095 FSRIKPEKPNIALETPMEEPAFRRLRQALPQHLH-GRLVYQG 1135
>gi|172038623|ref|YP_001805124.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51142]
gi|354554037|ref|ZP_08973342.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51472]
gi|171700077|gb|ACB53058.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51142]
gi|353553716|gb|EHC23107.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51472]
Length = 1159
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 272/569 (47%), Positives = 377/569 (66%), Gaps = 10/569 (1%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQF 86
P L K++ T W++ K K + I+K+ VDL+ LY R K YP P E F
Sbjct: 550 PPQLHKMTGKT-WQKSKQKVRKNIKKLAVDLINLYAKRAKNTGFTYPLDTPWQQELEDSF 608
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVL 145
PY+PTPDQ KA DV+ DL E + PMDRL+CGDVGFGKTEVA+RAIF V++G KQ L
Sbjct: 609 PYQPTPDQLKAIQDVKIDL-ESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGHKQVAFL 667
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
APT +L +QH+ + ERF+ YP I +GLL+RF++ +EK+E + + G L+I+VGT LL
Sbjct: 668 APTTILTQQHYHTLKERFAPYP-INIGLLNRFRTTSEKKEIIQRLATGELDIVVGTQQLL 726
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
G V + +LGLLVVDEEQRFGV QKEKI K VDVLTL+ATPIPRTLY++L+G R+ S
Sbjct: 727 GKSVKFKDLGLLVVDEEQRFGVNQKEKIKEIKSHVDVLTLTATPIPRTLYMSLSGIREMS 786
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
LI+TPPP R PIKTHLS ++ + V +AI+ ELDRGGQVFYV+PR++G+EE ++ P
Sbjct: 787 LITTPPPSRRPIKTHLSRYNPDVVRTAIRNELDRGGQVFYVVPRVEGIEEVAAQIKTMVP 846
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
+AIAHGQ +LE TM F G IL+CT IVESGLDI NTIIV+D Q+FGLA
Sbjct: 847 SARMAIAHGQMDVNELEITMLSFNNGDADILVCTTIVESGLDIPRVNTIIVEDAQKFGLA 906
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
QLYQLRGRVGR+ +AHA+L YP K+ L++ A +RL AL+E +LG G+QLA +DM IRG
Sbjct: 907 QLYQLRGRVGRSGIQAHAWLLYPSKAQLTETARQRLRALQEFSQLGSGYQLATRDMEIRG 966
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYI 505
G + G +Q+G + ++G +L+ EML E++ ++ + V + QID+ + +P+EYI
Sbjct: 967 VGNLLGAEQSGQMESIGFELYMEMLQEAIREIQGQEIPKV--EDTQIDLQLTAFIPTEYI 1024
Query: 506 NHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
+E M A + L Q +YG P +E LL+ + ++++A +G
Sbjct: 1025 PDMEQKMSAYRGIAVANSKK--ELAQIAAEWNDRYGNLPVPVEQLLQVMELKQLAKSLGF 1082
Query: 566 TKIYASGKM-VGMKTNMNKKVFKMMIDSM 593
++I GK + ++T M + +K++ + +
Sbjct: 1083 SRIKPEGKQHIVLETPMEEPAWKLLQEKL 1111
>gi|254430155|ref|ZP_05043858.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001]
gi|197624608|gb|EDY37167.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001]
Length = 1189
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 271/610 (44%), Positives = 394/610 (64%), Gaps = 16/610 (2%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQF 86
P L+++ T AW + K + + A++++ +DL++LY R K P+P + E F
Sbjct: 557 PPDLNRMGGT-AWSKAKERARKAVRRVALDLVKLYAERHKTPGFPFPPDGPWQNELEDSF 615
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
PYEPTPDQ KA DV+RD+ E+ PMDRL+CGDVGFGKTEVA+RAIF V+AG+Q +LA
Sbjct: 616 PYEPTPDQVKAIADVKRDM-EQAQPMDRLVCGDVGFGKTEVAIRAIFKAVTAGRQVAMLA 674
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT VLA+QH+ +SERF+ YP +KV LL+RF++ AE++ + + G ++++VGTH LLG
Sbjct: 675 PTTVLAQQHWRSLSERFAPYP-VKVSLLNRFRTAAERKLIQEGLAAGTVDVVVGTHQLLG 733
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
+ LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIPRTLY++L+G R+ SL
Sbjct: 734 KGTRFKQLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSLSGVREMSL 793
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPPP R PIKTHL+A +E V SAI+ ELDRGGQ+FYV+PR++G+EE + L+Q PG
Sbjct: 794 ITTPPPLRRPIKTHLAALDEEAVRSAIRQELDRGGQIFYVVPRVEGIEEVAERLRQMLPG 853
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+ + +AHGQ +LE M F G +++CT IVESGLDI NTI+++D +FGLAQ
Sbjct: 854 LQLLVAHGQMAEGELESAMVAFNAGEADLMLCTTIVESGLDIPRVNTILIEDAHRFGLAQ 913
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
LYQLRGRVGR+ +AHA+LFYP + LS+ A +RL A++E +LG G+QLA +DM IRG
Sbjct: 914 LYQLRGRVGRSGIQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGSGYQLAMRDMEIRGV 973
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
G + G +Q+G + +G DL+ EML ESL+++ + V QID+ I +P ++I
Sbjct: 974 GNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPKV--DDTQIDLPITAFIPGDWIT 1031
Query: 507 HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGIT 566
+ M A ++ L++ + +YG P + LL+ + ++ +A G +
Sbjct: 1032 ENDEKMAAYRAAADCTSKE--ALVELAAAWVDRYGAIPAPVTALLQLMELKLVARRCGFS 1089
Query: 567 KIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELL--------LELP 618
+I + + T M + F+++ + +H + G A++L +E
Sbjct: 1090 RIKPEKPNIALDTPMEEPAFRLLRQGLPQHLHGRLVYQAGSGSTAKVLARGLGVLPVERQ 1149
Query: 619 REQLLNWIFQ 628
E+L+ W+ Q
Sbjct: 1150 LEELMGWLNQ 1159
>gi|209525598|ref|ZP_03274136.1| transcription-repair coupling factor [Arthrospira maxima CS-328]
gi|423065217|ref|ZP_17054007.1| transcription-repair coupling factor [Arthrospira platensis C1]
gi|209493931|gb|EDZ94248.1| transcription-repair coupling factor [Arthrospira maxima CS-328]
gi|406713349|gb|EKD08520.1| transcription-repair coupling factor [Arthrospira platensis C1]
Length = 1167
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 280/618 (45%), Positives = 403/618 (65%), Gaps = 16/618 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
R +E+K P+ L+KL+ AWE+ + K +I+K+ VDL++LY R ++ YP++ P
Sbjct: 550 LRRSESKVPQ-LNKLTGK-AWEKSREKVGKSIKKLAVDLLKLYAERSQKTGFSYPQDTPW 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ K DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF V+A
Sbjct: 608 QQEMEDSFPYQPTPDQLKCSQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTA 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ LAPT +L +QH+ + ERF+ YP I++GLL+RF+S +EK+ + G ++II
Sbjct: 667 GKQVAFLAPTTILTQQHYHTLKERFAPYP-IEIGLLNRFRSASEKKLIQQKLTTGEIDII 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTHS+L + + +LGLLVVDEEQRFGV QKEKI + K VDVLTL+ATPIPRTLY+AL
Sbjct: 726 VGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKALKTHVDVLTLTATPIPRTLYMAL 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PI+THL ++E + +AI ELDRGGQVFYV+PRI+G+EE
Sbjct: 786 SGIREMSLITTPPPSRRPIQTHLGPLNQETIRAAICQELDRGGQVFYVVPRIEGIEEKSA 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+++ P +AIAHGQ + +LE M F+ G IL+CT I+ESGLDI NTI+V+D
Sbjct: 846 AIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIPRVNTILVED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK----SLLSDQALERLAALEECRELGQGF 434
+FGL QLYQLRGRVGRA +AHA+LFYP K + L++ A++RL A++E +LG G+
Sbjct: 906 AHKFGLGQLYQLRGRVGRAGVQAHAWLFYPVKGDGQAALTEDAVKRLRAIKEFTQLGSGY 965
Query: 435 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 494
QLA +D+ IRG G I G QQ+G + +G DL+ EML E++ +V + V Q+D+
Sbjct: 966 QLAMRDLEIRGAGDILGAQQSGQMNAIGFDLYTEMLQEAIQEVRGQEIPQV--DDTQVDL 1023
Query: 495 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+ +PS+YI L+ M A+ QD L + E +YGK P + LL+ +
Sbjct: 1024 ILTAFIPSDYITDLDQKMSAYRAV--ASCQDSEELSRIEEDWSDRYGKIPAPAQQLLRVM 1081
Query: 555 YVRRMAADIGITKIYA--SGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAE 612
++++A +G +I S + + ++T M + + ++ ++ + + + Q+K
Sbjct: 1082 ELKQIAKKLGFARIRPDDSKQNIVLETPMEEPAWNLLKQNLPEHL-QPRFIYGRKQVKIR 1140
Query: 613 LLLELPREQLLNWIFQCL 630
L LP + L+ + Q L
Sbjct: 1141 GLGALPPSKQLDCLIQWL 1158
>gi|88808865|ref|ZP_01124374.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805]
gi|88786807|gb|EAR17965.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805]
Length = 1180
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 274/624 (43%), Positives = 402/624 (64%), Gaps = 13/624 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPA 78
+R N P+ LSK+ +AW + K + A++K+ +DL++LY R + +P P
Sbjct: 541 YRANSDAPPQ-LSKMG-GSAWVKAKERASKALRKVALDLVKLYAERHQAPGFAFPVDGPW 598
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPYEPTPDQ KA +V+RD+ E+ PMDRL+CGDVGFGKTEVA+RAIF ++A
Sbjct: 599 QTELEESFPYEPTPDQLKATAEVKRDM-EKSQPMDRLVCGDVGFGKTEVAIRAIFKAITA 657
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G+Q +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ E++ L+ +K G ++ +
Sbjct: 658 GRQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTAGERKSILEGLKKGTIDAV 716
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL ++ LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIPRTLY++L
Sbjct: 717 VGTHQLLSKSTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSL 776
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL+A +E + SAI+ ELDRGGQVFYV+PR++G+E+
Sbjct: 777 SGVREMSLITTPPPLRRPIKTHLAALDEEAIRSAIRQELDRGGQVFYVVPRVEGIEDVAG 836
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L+Q PG+ + +AHGQ +LE M F G +++CT IVESGLDI NTI+++D
Sbjct: 837 QLRQMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRVNTILIED 896
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGLAQLYQLRGRVGR+ +AHA+LFYP + LS+ A +RL A++E +LG G+QLA
Sbjct: 897 AHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSEAARQRLRAIQEFAQLGSGYQLAM 956
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML ESL+++ + SV Q+D+ +
Sbjct: 957 RDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPSV--DDTQVDLQVTA 1014
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P+++I + M A + D L++ +YG P ++ LL+ + ++
Sbjct: 1015 FIPADWITDADEKMAAYRAAAECLSSD--ELVELAALWADRYGALPGPVQSLLQLMNLKL 1072
Query: 559 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLE-- 616
+A G ++I + ++T M + F+++ + +H + G A++L
Sbjct: 1073 LAKRCGFSRIRPEKPNIVLETPMEEPAFRLLRQGLPQHLHGRLVYQAGPGAAAKVLARGL 1132
Query: 617 --LPREQLLNWIFQCLAELYASLP 638
LP E+ L+ + L ++ A +P
Sbjct: 1133 GVLPMEKQLDELKGWLEQMAAQIP 1156
>gi|148239816|ref|YP_001225203.1| transcription-repair coupling factor [Synechococcus sp. WH 7803]
gi|147848355|emb|CAK23906.1| Transcription-repair coupling factor [Synechococcus sp. WH 7803]
Length = 1180
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 272/626 (43%), Positives = 404/626 (64%), Gaps = 13/626 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPA 78
+R N P+ LSK+ + AW + K + A++K+ +DL++LY R + +P P
Sbjct: 541 YRANSDAPPQ-LSKMGGS-AWVKAKERASKALRKVALDLVKLYAERHQAPGFAFPVDGPW 598
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+E FPYEPTPDQ KA +V++D+ E+ PMDRL+CGDVGFGKTEVA+RAIF ++A
Sbjct: 599 QSELEESFPYEPTPDQLKATAEVKKDM-EKSQPMDRLVCGDVGFGKTEVAIRAIFKAITA 657
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G+Q +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ E++ L+ +K G ++ +
Sbjct: 658 GRQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTAGERKSILEGLKKGTIDAV 716
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL ++ LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIPRTLY++L
Sbjct: 717 VGTHQLLSKSTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSL 776
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL+A +E + SAI+ ELDRGGQVFYV+PR++G+E+
Sbjct: 777 SGVREMSLITTPPPLRRPIKTHLAALDEEAIRSAIRQELDRGGQVFYVVPRVEGIEDVAA 836
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L+Q PG+ + +AHGQ +LE M F G +++CT IVESGLDI NTI+++D
Sbjct: 837 QLRQMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRVNTILIED 896
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGLAQLYQLRGRVGR+ +AHA+LFYP + LS+ A +RL A++E +LG G+QLA
Sbjct: 897 AHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSEAARQRLRAIQEFAQLGSGYQLAM 956
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML ESL+++ + SV Q+D+ +
Sbjct: 957 RDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPSV--DDTQVDLQVTA 1014
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P+++I + M A + D L++ +YG P ++ LL+ + ++
Sbjct: 1015 FIPADWITDADEKMAAYRAAAECLSGD--ELVELAALWADRYGALPGPVQSLLQLMNLKL 1072
Query: 559 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLE-- 616
+A G ++I + ++T M + F+++ + +H + G A++L
Sbjct: 1073 LAKRCGFSRIRPEKPNIALETPMEEPAFRLLRQGLPQHLHGRLVYQTGTGASAKVLARGL 1132
Query: 617 --LPREQLLNWIFQCLAELYASLPAL 640
LP ++ L+ + L ++ A +P +
Sbjct: 1133 GVLPMDKQLDELKGWLEQMAAQIPGV 1158
>gi|376005461|ref|ZP_09782964.1| Transcription-repair-coupling factor [Arthrospira sp. PCC 8005]
gi|375326175|emb|CCE18717.1| Transcription-repair-coupling factor [Arthrospira sp. PCC 8005]
Length = 1167
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 280/618 (45%), Positives = 402/618 (65%), Gaps = 16/618 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
R +E+K P+ L+KL+ AWE+ + K +I+K+ VDL++LY R ++ YP + P
Sbjct: 550 LRRSESKVPQ-LNKLTGK-AWEKSREKVGKSIKKLAVDLLKLYAERSQKTGFSYPDDTPW 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ K DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF V+A
Sbjct: 608 QQEMEDSFPYQPTPDQLKCSQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTA 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ LAPT +L +QH+ + ERF+ YP I++GLL+RF+S +EK+ + G ++II
Sbjct: 667 GKQVAFLAPTTILTQQHYHTLKERFAPYP-IEIGLLNRFRSASEKKLIQQKLTTGEIDII 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTHS+L + + +LGLLVVDEEQRFGV QKEKI + K VDVLTL+ATPIPRTLY+AL
Sbjct: 726 VGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKALKTHVDVLTLTATPIPRTLYMAL 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PI+THL ++E + +AI ELDRGGQVFYV+PRI+G+EE
Sbjct: 786 SGIREMSLITTPPPSRRPIQTHLGPLNQETIRAAICQELDRGGQVFYVVPRIEGIEEKSA 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+++ P +AIAHGQ + +LE M F+ G IL+CT I+ESGLDI NTI+V+D
Sbjct: 846 AIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIPRVNTILVED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK----SLLSDQALERLAALEECRELGQGF 434
+FGL QLYQLRGRVGRA +AHA+LFYP K + L++ A++RL A++E +LG G+
Sbjct: 906 AHKFGLGQLYQLRGRVGRAGVQAHAWLFYPVKGDGQAALTEDAVKRLRAIKEFTQLGSGY 965
Query: 435 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 494
QLA +D+ IRG G I G QQ+G + +G DL+ EML E++ +V + V Q+D+
Sbjct: 966 QLAMRDLEIRGAGDILGAQQSGQMNAIGFDLYTEMLQEAIQEVRGQEIPQV--DDTQVDL 1023
Query: 495 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+ +PS+YI L+ M A+ QD L + E +YGK P + LL+ +
Sbjct: 1024 ILTAFIPSDYITDLDQKMSAYRAV--ASCQDSEELSRIEEDWSDRYGKIPAPAQQLLRVM 1081
Query: 555 YVRRMAADIGITKIYA--SGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAE 612
++++A +G +I S + + ++T M + + ++ ++ + + + Q+K
Sbjct: 1082 ELKQIAKKLGFARIRPDDSKQNIVLETPMEEPAWNLLKQNLPEHL-QPRFIYGRKQVKIR 1140
Query: 613 LLLELPREQLLNWIFQCL 630
L LP + L+ + Q L
Sbjct: 1141 GLGALPPSKQLDCLIQWL 1158
>gi|300868792|ref|ZP_07113400.1| Transcription-repair-coupling factor [Oscillatoria sp. PCC 6506]
gi|300333202|emb|CBN58592.1| Transcription-repair-coupling factor [Oscillatoria sp. PCC 6506]
Length = 1226
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 265/574 (46%), Positives = 386/574 (67%), Gaps = 9/574 (1%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQ 85
R L+KLS T WE+ K K + +I+K+ VDL+ LY R +Q +P + P E
Sbjct: 617 RAPELNKLSAQT-WEKTKAKVRKSIKKLAVDLLNLYAKRAQQVGFAFPPDMPWQQELEDS 675
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
FPY+PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF ++AGKQ +L
Sbjct: 676 FPYQPTPDQLKATQDVKRDM-EGDRPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVAML 734
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
APT +L +QH+ + ERF+ YP I+VGLL+RF+++ E+ E + G L+++VGT S+L
Sbjct: 735 APTTILTQQHYHTLKERFAPYP-IEVGLLNRFRTETERRELQRRLASGELDVVVGTQSIL 793
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
V + +LGL+VVDEEQRFGVKQKE I + K VDVLTL+ATPIPRTLY++L+G R+ S
Sbjct: 794 SKGVKFKDLGLMVVDEEQRFGVKQKEAIKALKTMVDVLTLTATPIPRTLYMSLSGIREMS 853
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+TPPP R PI+THL+A+ E V +AI+ ELDRGGQVFYV+PRI+G+++ L P
Sbjct: 854 IIATPPPTRRPIQTHLAAYDPEVVRTAIRQELDRGGQVFYVVPRIEGIDDLAAQLGVMVP 913
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
G IAIAHGQ + +LE M F+ IL+CT I+ESGLDI NTI+++D Q+FGLA
Sbjct: 914 GAKIAIAHGQMDASELEAIMLAFSAADFDILVCTTIIESGLDIPRVNTILIEDAQRFGLA 973
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
QLYQLRGRVGRA +AHA+LFYP+++ L+D+A +RL A++E +LG G+QLA +D+ IRG
Sbjct: 974 QLYQLRGRVGRAGVQAHAWLFYPNQNRLTDEARQRLRAIQEFAQLGSGYQLAIRDLEIRG 1033
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYI 505
G I G +Q+G + +G DL+ +ML E++ ++ + V + QID+ + +P++YI
Sbjct: 1034 AGDILGAEQSGQMDAIGFDLYAQMLEEAIREIKGQEIPQV--EDTQIDLTLTAFIPADYI 1091
Query: 506 NHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
L+ M A+ + L Q + +YG P + L++ + ++++A IG
Sbjct: 1092 TDLDQKMSAYRSVASASTLE--ELSQIEAAWCDRYGPIPKPAQQLIRVVQLKQLAMKIGF 1149
Query: 566 TKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVH 598
++I K + ++T M + + ++ ++ +H
Sbjct: 1150 SRIKPENKQHIVLETPMEEPGWNLLKANLPDHLH 1183
>gi|113954991|ref|YP_730883.1| transcription-repair coupling factor [Synechococcus sp. CC9311]
gi|113882342|gb|ABI47300.1| transcription-repair coupling factor [Synechococcus sp. CC9311]
Length = 1180
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 274/624 (43%), Positives = 400/624 (64%), Gaps = 13/624 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPA 78
FR N + P LSK+ + AW + K + A++K+ +DL++LY R + +P P
Sbjct: 541 FRAN-SDTPPQLSKMGGS-AWVKAKERATKAVRKVALDLVKLYAERHQAAGFAFPIDGPW 598
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPYEPT DQ KA +DV+RD+ E+ PMDRL+CGDVGFGKTEVA+RAIF ++A
Sbjct: 599 QVELEDSFPYEPTSDQLKATVDVKRDM-EKPEPMDRLVCGDVGFGKTEVAIRAIFKAITA 657
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ E++ L+ +K G ++ +
Sbjct: 658 GKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTAGERKTILEELKTGTIDAV 716
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL ++ LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIPRTLY++L
Sbjct: 717 VGTHQLLSKNTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSL 776
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL+A E V S+I+ ELDRGGQVFYV+PR++G+EE
Sbjct: 777 SGVREMSLITTPPPLRRPIKTHLAALDDEAVRSSIRQELDRGGQVFYVVPRVEGIEEVAG 836
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ PG+ + +AHGQ +LE M F G +++CT IVESGLDI NTI+++D
Sbjct: 837 KLREMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRVNTILIED 896
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGLAQLYQLRGRVGR+ +AHA+LFYP + LS+ A +RL A++E +LG G+QLA
Sbjct: 897 AHRFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGSGYQLAM 956
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML ESL+++ + +V Q+D+ +
Sbjct: 957 RDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPAV--DDTQVDLQVTA 1014
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P+++I + M A + + L++ +YG P ++ LL+ + ++
Sbjct: 1015 FIPADWIVDADEKMSAYRAASECLSSE--ALVELAAGWADRYGALPGPVQSLLQLMELKL 1072
Query: 559 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLE-- 616
+A G +I + +T M + F+++ + +H + G A++L+
Sbjct: 1073 LAKRCGFARIRPEKPNIAFETPMEEPAFRLLRQGLPQHLHGRLVYQAGTGSVAKVLVRGL 1132
Query: 617 --LPREQLLNWIFQCLAELYASLP 638
LP E+ L+ + L ++ A +P
Sbjct: 1133 GVLPMERQLDELKGWLEQMAAQIP 1156
>gi|123968563|ref|YP_001009421.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
AS9601]
gi|123198673|gb|ABM70314.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
AS9601]
Length = 1170
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/595 (45%), Positives = 390/595 (65%), Gaps = 9/595 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKK 96
T WER K K K I+K+ VD+++LY R K K YP++ P E FPY+PTPDQ
Sbjct: 561 TEWERIKDKNKKQIKKVAVDILKLYAKREKLKGYIYPEDGPWQDELEESFPYQPTPDQIT 620
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A +++ D+ E E PMDRL+CGDVGFGKTEVA+RAIF +++GKQ ++LAPT +LA+QH+
Sbjct: 621 AVEEIKSDM-ESEKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQVILLAPTTILAQQHW 679
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+S RFS YP IKV LL+RF++ E++E +K+ ++++V TH +LG + NLGL
Sbjct: 680 RTISNRFSPYP-IKVSLLNRFKTVNERKEIYAGLKNNKIDLVVATHQILGKEIEIKNLGL 738
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV+QKEKI K S+DVLTLSATPIPRTLY++L+G R SL++TPPP R
Sbjct: 739 LVIDEEQRFGVRQKEKIKKIKTSIDVLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRS 798
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
IKT+L+ + + +AI ELDRGGQ+FYVLPRI + + ++ L+ FP + +AHGQ
Sbjct: 799 IKTYLAEIDMDVIRTAINQELDRGGQIFYVLPRISDINQALNKLKNIFPSLKFIVAHGQM 858
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE M F G + ++ICT I+ESGLDI NTII++D +FGL+QLYQLRGRVGR
Sbjct: 859 NETELENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHKFGLSQLYQLRGRVGR 918
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ +AHA+LFYPD + ++D A +RL A+++ ELG G+QLA KDM IRG G++ GE+Q+G
Sbjct: 919 SSVQAHAWLFYPDINKINDAAKQRLKAIKDFSELGSGYQLAMKDMEIRGVGSLLGEEQSG 978
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
V +G DL+ EML E++S++ + V QID+ IN +P+ +I + E +E
Sbjct: 979 KVNAIGYDLYIEMLHEAISEISGQEIPEV--NDTQIDLPINAFIPATWILNREEKLEAYK 1036
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVG 576
A + ++ D L + +YG P +E L+ + ++ +A G +KI +
Sbjct: 1037 SATECSKND--ELTELATDWVNRYGNLPKPVESLIMIMRLKLLAKKCGFSKIKLKKPNIL 1094
Query: 577 MKTNMNKKVFKMMIDSMTSEVHRNSLTF-EGDQIKAELLLELPREQLLNWIFQCL 630
++T + FK++ +S+ S V +N F EG+Q+ + L ++ N I Q +
Sbjct: 1095 IETKLKNSTFKILKNSLASSV-QNKFNFNEGEQLSIITIRGLGATEIQNQIDQLM 1148
>gi|443320108|ref|ZP_21049232.1| transcription-repair coupling factor Mfd [Gloeocapsa sp. PCC 73106]
gi|442790180|gb|ELR99789.1| transcription-repair coupling factor Mfd [Gloeocapsa sp. PCC 73106]
Length = 1146
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/578 (46%), Positives = 384/578 (66%), Gaps = 17/578 (2%)
Query: 26 KRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAA 84
K P L ++S + AWE K K + ++K+ VDL++LY R + YP++ P +E
Sbjct: 540 KNPPELHRMS-SKAWENTKNKVRKTVKKLAVDLLKLYALRTQATGYAYPQDQPWQSELED 598
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAM 143
FPY+ TPDQ KA DV+RDL E + PMDRLICGDVGFGKTEVA+RAIF VV+ + KQ
Sbjct: 599 SFPYQVTPDQLKAIQDVKRDL-ESDRPMDRLICGDVGFGKTEVAIRAIFKVVAGSNKQVA 657
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
LAPT +L +QH+ + ERF+ YP I +GLL+RF++ E++E L+ + G ++++VGT
Sbjct: 658 FLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTALERKEILERLATGEIDVVVGTQQ 716
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LL + + + NLGLLV+DEEQRFGV QKEKI K +DVLTLSATPIPRTLY++++G R+
Sbjct: 717 LLSNGIKFRNLGLLVIDEEQRFGVNQKEKIKEIKTQLDVLTLSATPIPRTLYMSISGVRE 776
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
SLI+TPPP R PIKTHLS ++ E V +AI+ ELDRGGQ+FYV+PR++G+EE ++
Sbjct: 777 MSLITTPPPSRRPIKTHLSPYNLEVVRNAIRNELDRGGQIFYVVPRVEGIEEVAAGIRTM 836
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
PGV IAIAHGQ +LE TM F G IL+CT I+ESGLDI NTI+V+D +FG
Sbjct: 837 VPGVRIAIAHGQMVEAELESTMLGFNNGDADILLCTTIIESGLDIPRVNTIVVEDAHRFG 896
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQLRGRVGR+ +AHA+L YP ++ L++ A +RL AL+E +LG G+QLA +D+ I
Sbjct: 897 LSQLYQLRGRVGRSGVQAHAWLLYP-QTKLTEAARQRLRALQEFTQLGSGYQLAMRDLEI 955
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSE 503
RG G + G +Q+G + +G DL+ EML E++ ++ + V + QID+ +P++
Sbjct: 956 RGVGNLLGAEQSGQMAAIGFDLYVEMLQEAIKEIQGQEIPQV--EETQIDLAFTAFIPTD 1013
Query: 504 YINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
YI LE ME + A +AE L Q +YG P ++ LL+ L ++++
Sbjct: 1014 YIPDLEQKMEAYRSLATANSSAE-----LTQIALGWNDRYGPLPPPVQQLLQVLELKQLG 1068
Query: 561 ADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEV 597
+G +I K V ++T M + +K++ D++ +
Sbjct: 1069 KSLGFARIKTEAKQNVVLETPMEEPAWKLLADNLPQHI 1106
>gi|352094377|ref|ZP_08955548.1| transcription-repair coupling factor [Synechococcus sp. WH 8016]
gi|351680717|gb|EHA63849.1| transcription-repair coupling factor [Synechococcus sp. WH 8016]
Length = 1180
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 272/624 (43%), Positives = 400/624 (64%), Gaps = 13/624 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPA 78
FR N + P LSK+ + AW + K + A++K+ +DL++LY R + +P P
Sbjct: 541 FRAN-SDTPPQLSKMGGS-AWVKAKERASKAVRKVALDLVKLYAERHQAAGFAFPIDGPW 598
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPYEPT DQ KA +DV+RD+ E+ PMDRL+CGDVGFGKTEVA+RAIF ++A
Sbjct: 599 QVELEDSFPYEPTSDQLKATVDVKRDM-EKPEPMDRLVCGDVGFGKTEVAIRAIFKAITA 657
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ E++ L+ +K G ++ +
Sbjct: 658 GKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTAGERKTILEELKTGTIDAV 716
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL ++ LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIPRTLY++L
Sbjct: 717 VGTHQLLSKNTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSL 776
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL+A E V SAI+ ELDRGGQVFYV+PR++G+E+
Sbjct: 777 SGVREMSLITTPPPLRRPIKTHLAALDDEAVRSAIRQELDRGGQVFYVVPRVEGIEDVAG 836
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ PG+ + +AHGQ +LE M F G +++CT IVESGLDI NTI+++D
Sbjct: 837 KLREMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRVNTILIED 896
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGLAQLYQLRGRVGR+ +AHA+LFYP + LS+ A +RL A++E +LG G+QLA
Sbjct: 897 AHRFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGSGYQLAM 956
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML ESL+++ + +V Q+D+ +
Sbjct: 957 RDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPAV--DDTQVDLQVTA 1014
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P+++I + M A + + L++ +YG P ++ LL+ + ++
Sbjct: 1015 FIPADWIVDADEKMSAYRAASECLSSE--ALVELAAGWADRYGALPGPVQSLLQLMELKL 1072
Query: 559 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLE-- 616
+A G +I + ++T M + F+++ + +H + G A++L
Sbjct: 1073 LAKRCGFARIRPEKPNIALETPMEEPAFRLLRQGLPQHLHGRLVYQAGSGSVAKVLARGL 1132
Query: 617 --LPREQLLNWIFQCLAELYASLP 638
LP ++ L+ + L ++ + +P
Sbjct: 1133 GVLPMDRQLDELKGWLEQMASQIP 1156
>gi|282896750|ref|ZP_06304758.1| Transcription-repair coupling factor [Raphidiopsis brookii D9]
gi|281198468|gb|EFA73356.1| Transcription-repair coupling factor [Raphidiopsis brookii D9]
Length = 1202
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 280/615 (45%), Positives = 391/615 (63%), Gaps = 11/615 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR N RP L K++ AW+ K K K AI+K+ VDL++LY R +Q+ YP++ P
Sbjct: 562 FRTN-LDRPPQLHKMTGK-AWDNTKNKVKKAIKKLAVDLLQLYAARSQQEGFSYPQDMPW 619
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PT DQ KA DV+RD+ E PMDRL+CGDVGFGKTEVA+RAIF V+A
Sbjct: 620 QEEMEDSFPYQPTIDQLKAVQDVKRDM-ESPRPMDRLVCGDVGFGKTEVAIRAIFKAVTA 678
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF+S EK + G L+I+
Sbjct: 679 GKQVALLAPTTILTQQHYHTIKERFAPYP-IHVGLLNRFRSPEEKRNIQKRLLTGELDIV 737
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V + +LGLLV+DEEQRFGV QKEKI + K +DVLTLSATPIPRTLY++L
Sbjct: 738 VGTHQLLGKGVQFKDLGLLVIDEEQRFGVNQKEKIKTLKTHLDVLTLSATPIPRTLYMSL 797
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PI+THL+ + + V SAI+ ELDRGGQVFYV+PR++G+EE
Sbjct: 798 SGIREMSLITTPPPTRRPIQTHLAPLNPQIVSSAIRQELDRGGQVFYVVPRVEGIEETTT 857
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ P IAHGQ QLE TM F+ IL+CT I+ESGLDI NTI+++D
Sbjct: 858 RLREMIPSGRFVIAHGQMDESQLESTMLTFSNHEADILVCTTIIESGLDIPRVNTILIED 917
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG G+QLA
Sbjct: 918 AHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGSGYQLAM 977
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V QID+N+
Sbjct: 978 RDMEIRGVGNLLGAEQSGQMNAIGFDLYMEMLEEAIREIRGQEIPKV--DDTQIDLNLTA 1035
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P+ YI ++ M A ++ L +YG P +L+ + +++
Sbjct: 1036 FIPATYITDIDQKMSAYRAVATAKSKE--ELKAIAAEWNDRYGIIPPPANQMLRVMELKQ 1093
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A ++G ++I K + ++T M + + ++ +T E +N + ++ A L
Sbjct: 1094 LAKNLGFSRIKPENKQHIVLETPMEEPAWNLLAQRLT-ENMKNRFVYSPGKVTARGLAVF 1152
Query: 618 PREQLLNWIFQCLAE 632
EQ L + LA+
Sbjct: 1153 KAEQQLETLIDVLAK 1167
>gi|282900454|ref|ZP_06308403.1| Transcription-repair coupling factor [Cylindrospermopsis raciborskii
CS-505]
gi|281194647|gb|EFA69595.1| Transcription-repair coupling factor [Cylindrospermopsis raciborskii
CS-505]
Length = 1171
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 278/616 (45%), Positives = 392/616 (63%), Gaps = 11/616 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR N RP L K++ + AW+ K+K K AI+K+ VDL++LY R +Q+ YP++ P
Sbjct: 562 FRTN-LDRPPQLHKMT-SKAWDNTKSKVKKAIKKLAVDLLQLYAARSQQEGFSYPQDMPW 619
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PT DQ KA DV+RD+ E PMDRL+CGDVGFGKTEVA+RAIF V+A
Sbjct: 620 QEEMEDSFPYQPTTDQLKAVQDVKRDM-ESPRPMDRLVCGDVGFGKTEVAIRAIFKAVTA 678
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF+S EK + G L+I+
Sbjct: 679 GKQVALLAPTTILTQQHYHTIKERFAPYP-IHVGLLNRFRSHEEKRNIQKRLLTGELDIV 737
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V + +LGLLV+DEEQRFGV QKEKI + K +DVLTLSATPIPRTLY++L
Sbjct: 738 VGTHQLLGKGVQFKDLGLLVIDEEQRFGVNQKEKIKTLKTHLDVLTLSATPIPRTLYMSL 797
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PI+THL+ + + V SAI+ ELDRGGQVFYV+PR++G+EE
Sbjct: 798 SGIREMSLITTPPPTRRPIQTHLAPLNPQIVSSAIRQELDRGGQVFYVVPRVEGIEETTT 857
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ P IAHGQ QLE TM F+ IL+CT I+ESGLDI NTI+++D
Sbjct: 858 RLREMIPSGRFVIAHGQMDESQLESTMLTFSNHEADILVCTTIIESGLDIPRVNTILIED 917
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG G+QLA
Sbjct: 918 AHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGSGYQLAM 977
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V QID+N+
Sbjct: 978 RDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPKV--DDTQIDLNLTA 1035
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P+ YI ++ M A ++ L +YG P +L+ + +++
Sbjct: 1036 FIPATYITDIDQKMSAYRAVATAKSKE--ELRAIAAEWNDRYGIVPPPANQMLRVMELKQ 1093
Query: 559 MAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
+A ++G ++I K + ++T M + + ++ +T E +N + ++ A L
Sbjct: 1094 LAKNLGFSRIKPENKQHIVLETPMEEPAWNLLAQRLT-ENMKNRFVYSPGKVTARGLAIF 1152
Query: 618 PREQLLNWIFQCLAEL 633
EQ L + ++
Sbjct: 1153 KAEQQLETLIDVFGKM 1168
>gi|124025758|ref|YP_001014874.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
NATL1A]
gi|123960826|gb|ABM75609.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
NATL1A]
Length = 1167
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 277/625 (44%), Positives = 408/625 (65%), Gaps = 18/625 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPA 78
+R + K P T+SKL W + K K K +++K+ +DL++LY R K+K +P P
Sbjct: 552 YRSSNAKTP-TISKLGGAN-WNKIKEKAKKSVKKVAIDLIKLYAERSKEKGYKFPCDGPW 609
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+E FPY TPDQ A V+ D+ E E PMDRL+CGDVGFGKTEVA+RAIF +++
Sbjct: 610 QSELEDSFPYALTPDQATATSQVKSDM-ESEKPMDRLVCGDVGFGKTEVAIRAIFKAITS 668
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT VL++QH+ +S+RF+ YP IKV LL+RF++ +EK+ + +K G ++ +
Sbjct: 669 GKQIALLAPTTVLSQQHWRTISDRFAPYP-IKVSLLNRFKTNSEKKHIVSGLKAGQIDAV 727
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL ++VY +LGLLV+DEEQRFGV QKEKI K SVDVLTLSATPIPRTLY++L
Sbjct: 728 VGTHQLLNKKLVYKDLGLLVIDEEQRFGVNQKEKIKELKKSVDVLTLSATPIPRTLYMSL 787
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL+ E + SAI E+DRGGQ+FY++PRIKG+E+ +
Sbjct: 788 SGVREMSLITTPPPLRRPIKTHLAPLDNEIIRSAISQEIDRGGQIFYIVPRIKGIEDVAE 847
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L+ P V + IAHGQ LE M F G IL+CT IVESGLDI NTI+++D
Sbjct: 848 KLKIMIPNVKLLIAHGQMEEGALENAMLAFNAGEADILLCTTIVESGLDIPRVNTILIED 907
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ +AHA+LFYP L++ + +RL A++E +LG G+QLA
Sbjct: 908 SHKFGLSQLYQLRGRVGRSGVQAHAWLFYPSDEKLNETSRQRLKAIKEFSDLGSGYQLAM 967
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G I G +Q+G + +G DL+ E+L E+++++ + SV QID+ +
Sbjct: 968 RDMEIRGVGNILGIEQSGQMETIGFDLYMELLQETIAEIQGQDIPSV--DDTQIDLPVTA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+P ++I +P E +N A + ++ L+QF +L +YG P ++E L++ + ++
Sbjct: 1026 FIPGDWIT---DPDEKINAYRLATQCENNDSLVQFASNLVDRYGTLPKAVESLIEVMKLK 1082
Query: 558 RMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ-----IKAE 612
+A G ++I S V ++T M++ FK++ + + +H + +GD+ I+
Sbjct: 1083 IIAKKCGFSRIKLSKPNVELETMMDEPAFKLLRKGLANHLHGRFIYKKGDRCSTVTIRGL 1142
Query: 613 LLLELPR--EQLLNWIFQCLAELYA 635
+L+ + +QL W+ +E+ A
Sbjct: 1143 GILDSDKLLDQLTEWLKLMNSEINA 1167
>gi|291569965|dbj|BAI92237.1| transcriptional-repair coupling factor [Arthrospira platensis
NIES-39]
Length = 1167
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 270/577 (46%), Positives = 384/577 (66%), Gaps = 15/577 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
R +E+K P+ L+KL+ AWE+ + K + +++K+ VDL++LY R ++ YP + P
Sbjct: 550 LRRSESKVPQ-LNKLTGK-AWEKNREKVRKSVKKLAVDLLKLYAERSQKTGFSYPHDTPW 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ K DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF V+
Sbjct: 608 QQEMEDSFPYKPTPDQLKCSQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTG 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ LAPT +L +QH+ + ERF+ YP I++GLL+RF+S +EK+ + G ++II
Sbjct: 667 GKQVAFLAPTTILTQQHYHTLKERFAPYP-IEIGLLNRFRSASEKKLIQQKLITGEIDII 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTHS+L + + +LGLLVVDEEQRFGV QKEKI + K VDVLTL+ATPIPRTLY+AL
Sbjct: 726 VGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKALKTHVDVLTLTATPIPRTLYMAL 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL ++E + +AI ELDRGGQVFYV+PRI+G+EE
Sbjct: 786 SGIREMSLITTPPPSRRPIKTHLGPLNQETIRAAICQELDRGGQVFYVVPRIEGIEEKSA 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+++ P +AIAHGQ + +LE M F+ G IL+CT I+ESGLDI NTI+V+D
Sbjct: 846 AIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIPRVNTILVED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK----SLLSDQALERLAALEECRELGQGF 434
+FGL QLYQLRGRVGRA +AHA+LFYP K + L++ A++RL A++E +LG G+
Sbjct: 906 AHKFGLGQLYQLRGRVGRAGAQAHAWLFYPIKGDGQAALTEDAVKRLRAIKEFTQLGSGY 965
Query: 435 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 494
QLA +D+ IRG G I G QQ+G + +G DL+ EML E++ +V + V Q+D+
Sbjct: 966 QLAMRDLEIRGAGDILGAQQSGQMNAIGFDLYTEMLQEAIQEVRGQEIPQV--DDTQVDL 1023
Query: 495 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+ +PS+YI L+ M A+ QD L + E +YG P + LL+ +
Sbjct: 1024 ILTAFIPSDYITDLDQKMSAYRAV--ASCQDSEELSRIEEDWSDRYGTIPAPAQQLLRVM 1081
Query: 555 YVRRMAADIGITKIYA--SGKMVGMKTNMNKKVFKMM 589
++++A +G +I S + + ++T M + + ++
Sbjct: 1082 ELKQIAKKLGFARIKPDDSKQNIILETPMEEPAWNLL 1118
>gi|409990943|ref|ZP_11274254.1| transcription-repair coupling factor [Arthrospira platensis str.
Paraca]
gi|409938200|gb|EKN79553.1| transcription-repair coupling factor [Arthrospira platensis str.
Paraca]
Length = 1152
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 270/577 (46%), Positives = 384/577 (66%), Gaps = 15/577 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
R +E+K P+ L+KL+ AWE+ + K + +++K+ VDL++LY R ++ YP + P
Sbjct: 535 LRRSESKVPQ-LNKLTGK-AWEKNREKVRKSVKKLAVDLLKLYAERSQKTGFSYPHDTPW 592
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ K DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF V+
Sbjct: 593 QQEMEDSFPYKPTPDQLKCSQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTG 651
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ LAPT +L +QH+ + ERF+ YP I++GLL+RF+S +EK+ + G ++II
Sbjct: 652 GKQVAFLAPTTILTQQHYHTLKERFAPYP-IEIGLLNRFRSASEKKLIQQKLITGEIDII 710
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTHS+L + + +LGLLVVDEEQRFGV QKEKI + K VDVLTL+ATPIPRTLY+AL
Sbjct: 711 VGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKALKTHVDVLTLTATPIPRTLYMAL 770
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL ++E + +AI ELDRGGQVFYV+PRI+G+EE
Sbjct: 771 SGIREMSLITTPPPSRRPIKTHLGPLNQETIRAAICQELDRGGQVFYVVPRIEGIEEKSA 830
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+++ P +AIAHGQ + +LE M F+ G IL+CT I+ESGLDI NTI+V+D
Sbjct: 831 AIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIPRVNTILVED 890
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK----SLLSDQALERLAALEECRELGQGF 434
+FGL QLYQLRGRVGRA +AHA+LFYP K + L++ A++RL A++E +LG G+
Sbjct: 891 AHKFGLGQLYQLRGRVGRAGAQAHAWLFYPIKGDGQAALTEDAVKRLRAIKEFTQLGSGY 950
Query: 435 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 494
QLA +D+ IRG G I G QQ+G + +G DL+ EML E++ +V + V Q+D+
Sbjct: 951 QLAMRDLEIRGAGDILGAQQSGQMNAIGFDLYTEMLQEAIQEVRGQEIPQV--DDTQVDL 1008
Query: 495 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+ +PS+YI L+ M A+ QD L + E +YG P + LL+ +
Sbjct: 1009 ILTAFIPSDYITDLDQKMSAYRAV--ASCQDSEELSRIEEDWSDRYGTIPAPAQQLLRVM 1066
Query: 555 YVRRMAADIGITKIYA--SGKMVGMKTNMNKKVFKMM 589
++++A +G +I S + + ++T M + + ++
Sbjct: 1067 ELKQIAKKLGFARIKPDDSKQNIILETPMEEPAWNLL 1103
>gi|72382209|ref|YP_291564.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
NATL2A]
gi|72002059|gb|AAZ57861.1| transcription-repair coupling factor [Prochlorococcus marinus str.
NATL2A]
Length = 1167
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 277/625 (44%), Positives = 407/625 (65%), Gaps = 18/625 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPA 78
+R + K P T+SKL W + K K K +++K+ +DL++LY R K+K +P P
Sbjct: 552 YRSSNAKTP-TISKLGGAN-WNKIKEKAKKSVKKVAIDLIKLYAERSKEKGYKFPCDGPW 609
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY TPDQ A V+ D+ E E PMDRL+CGDVGFGKTEVA+RAIF +++
Sbjct: 610 QNELEDSFPYALTPDQATATSQVKSDM-ESEKPMDRLVCGDVGFGKTEVAIRAIFKAITS 668
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT VL++QH+ +S+RF+ YP IKV LL+RF++ +EK+ + +K G ++ +
Sbjct: 669 GKQIALLAPTTVLSQQHWRTISDRFAPYP-IKVSLLNRFKTNSEKKHIVSGLKDGQIDAV 727
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL ++VY +LGLLV+DEEQRFGV QKEKI K SVDVLTLSATPIPRTLY++L
Sbjct: 728 VGTHQLLNKKLVYKDLGLLVIDEEQRFGVNQKEKIKELKKSVDVLTLSATPIPRTLYMSL 787
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R PIKTHL+ E + SAI E+DRGGQ+FY++PRIKG+E+ +
Sbjct: 788 SGVREMSLITTPPPLRRPIKTHLAPLDNEIIRSAISQEIDRGGQIFYIVPRIKGIEDVAE 847
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L+ P V + IAHGQ LE M F G IL+CT IVESGLDI NTI+++D
Sbjct: 848 KLKIMIPNVKLLIAHGQMEEGALENAMLAFNAGEADILLCTTIVESGLDIPRVNTILIED 907
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ +AHA+LFYP L++ + +RL A++E +LG G+QLA
Sbjct: 908 SHKFGLSQLYQLRGRVGRSGVQAHAWLFYPSDEKLNETSRQRLKAIKEFSDLGSGYQLAM 967
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G I G +Q+G + +G DL+ E+L E+++++ + SV QID+ +
Sbjct: 968 RDMEIRGVGNILGIEQSGQMETIGFDLYMELLQETIAEIQGQDIPSV--DDTQIDLPVTA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+P ++I +P E +N A + ++ L+QF +L +YG P ++E L++ + ++
Sbjct: 1026 FIPGDWIT---DPDEKINAYRLATQCENNDSLVQFASNLVDRYGTLPKAVESLIEVMKLK 1082
Query: 558 RMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ-----IKAE 612
+A G ++I S V ++T M++ FK++ + + +H + +GD+ I+
Sbjct: 1083 IIAKKCGFSRIKLSKPNVELETMMDEPAFKLLRKGLANHLHGRFIYKKGDKCSTVTIRGL 1142
Query: 613 LLLELPR--EQLLNWIFQCLAELYA 635
+L+ + +QL W+ +E+ A
Sbjct: 1143 GILDSDKLLDQLTEWLKLMNSEINA 1167
>gi|126696368|ref|YP_001091254.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9301]
gi|126543411|gb|ABO17653.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9301]
Length = 1169
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 266/595 (44%), Positives = 386/595 (64%), Gaps = 9/595 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKK 96
T WER K K K I+K+ VD+++LY R K K YP++ P E FPY+PTPDQ
Sbjct: 561 TEWERIKDKNKKQIKKVAVDILKLYAKREKLKGHIYPEDGPWQDELEESFPYQPTPDQIT 620
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A +++ D+ E + PMDRL+CGDVGFGKTEVA+RAIF +++GKQ + LAPT +LA+QH+
Sbjct: 621 AVKEIKSDM-ESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQVIFLAPTTILAQQHW 679
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
++ RFS YP IKV LL+RF+S E+ E +K+ ++++V TH +LG + NLGL
Sbjct: 680 RTINNRFSPYP-IKVSLLNRFKSINERREIYAGLKNNKIDLVVATHQILGKEIEIKNLGL 738
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV+QKEKI K ++DVLTLSATPIPRTLY++L+G R SL++TPPP R
Sbjct: 739 LVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRS 798
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
IKT+LS + + +AI ELDRGGQ+FYVLPRI +++ +D L+ P + +AHGQ
Sbjct: 799 IKTYLSEIDMDVIRTAINKELDRGGQIFYVLPRISDIDQAIDKLKNMIPNLKFIVAHGQM 858
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE M F G + ++ICT I+ESGLDI NTII++D +FGL+QLYQLRGRVGR
Sbjct: 859 NETELENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHKFGLSQLYQLRGRVGR 918
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ +AHA+LFYP+ + ++D A +RL A+++ ELG G+QLA KDM IRG G++ GE+Q+G
Sbjct: 919 SGVQAHAWLFYPNINKINDAAKQRLKAIKDFSELGSGYQLAMKDMEIRGVGSLLGEEQSG 978
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
V +G DL+ EML E++S++ + V QID+ IN +P+ +I + E +E
Sbjct: 979 KVNAIGYDLYIEMLHEAISEISGQEIPEV--NDTQIDLPINAFIPATWILNREEKLEAYK 1036
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVG 576
A + + + L + +YG P +E L+ + ++ +A G KI +
Sbjct: 1037 SATECSNN--YELTELATDWVNRYGNLPKPVESLIMIMRLKLLAKKCGFNKIKLKKPNIL 1094
Query: 577 MKTNMNKKVFKMMIDSMTSEVHRNSLTF-EGDQIKAELLLELPREQLLNWIFQCL 630
++T + FK++ +S+ S V +N F EG+Q+ + L ++ N I Q +
Sbjct: 1095 IETKLKNSTFKILKNSLASSV-QNKFNFNEGEQLSIITIRGLGATEIQNQIDQLM 1148
>gi|428768769|ref|YP_007160559.1| transcription-repair coupling factor [Cyanobacterium aponinum PCC
10605]
gi|428683048|gb|AFZ52515.1| transcription-repair coupling factor [Cyanobacterium aponinum PCC
10605]
Length = 1197
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 279/627 (44%), Positives = 409/627 (65%), Gaps = 16/627 (2%)
Query: 13 SIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 72
S+ +R ETK P+ L+K+S W+ K K K +I+K+ VDL++LY R + K
Sbjct: 575 SLELVSRYRHTETKPPK-LNKMSGK-EWQNVKNKVKKSIKKLAVDLVKLYATRNELKGYA 632
Query: 73 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 131
YP + P E FPY+ TPDQ KA +DV+RDL E + PMDRL+CGDVGFGKTEVA+R+
Sbjct: 633 YPPDSPWQTELEDSFPYQATPDQLKAIIDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRS 691
Query: 132 IFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190
IF VV++G KQ + LAPT +L++QH+ + ERF+ YP I +GLL+RF++ +E++E + +
Sbjct: 692 IFKVVTSGNKQVVFLAPTTILSQQHYHTLVERFAPYP-INIGLLNRFRTASERKEIIQKL 750
Query: 191 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 250
G L+++VGT LL +++ Y +LGLLVVDEEQRFGV QKEKI + K S+DVLTLSATPI
Sbjct: 751 ATGELDVVVGTQLLLSNKIKYKDLGLLVVDEEQRFGVNQKEKIKALKTSIDVLTLSATPI 810
Query: 251 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 310
PRTLY++++G R+ SLI+TPPP R PIKTH+ F++E + +AI+ ELDRGGQ+FYV+PRI
Sbjct: 811 PRTLYMSISGVREMSLITTPPPSRRPIKTHIMPFNQEVIRTAIRNELDRGGQIFYVVPRI 870
Query: 311 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370
+G+E+ + L+Q P + IAIAHGQ QLE TM F+ G +L+CT IVESGLDI
Sbjct: 871 EGMEKIITMLEQMIPSLRIAIAHGQLDEGQLESTMLGFSNGEADLLLCTTIVESGLDIPR 930
Query: 371 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 430
NTIIV+ +FGL+QLYQLRGRVGR+ +AHA+L YP+ +LSD A +RL AL+E +L
Sbjct: 931 VNTIIVESAHKFGLSQLYQLRGRVGRSGIQAHAWLLYPNDEILSDVAKKRLRALQEFSQL 990
Query: 431 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 490
G G+ LA +DM IRG G + G +Q+G + +G +++ EML E+++++ + V +
Sbjct: 991 GSGYHLAMRDMEIRGVGNLLGAEQSGQMEAIGFEMYTEMLKEAINEIQGQEIPQV--EDT 1048
Query: 491 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 550
QID+ + +P+ YI +E M+ Q + Q + +YG+ P S L
Sbjct: 1049 QIDLKLTALIPNRYIADMEQKMDAYRAVATVTSQR--EIKQIESDWQDRYGEIPESAREL 1106
Query: 551 LKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQI 609
L ++ A IG ++I GK + ++T M + + ++ + + + RN + +++
Sbjct: 1107 LLVAELKLKAKSIGFSRIKPEGKQNIIIETPMQEPAWLLLAEKLPPHL-RNRFVYGKNKV 1165
Query: 610 KAELLLEL-PREQLL---NWIFQCLAE 632
L + P +QL NW ++E
Sbjct: 1166 IVRGLGTMKPSQQLENLNNWFTYLVSE 1192
>gi|33240450|ref|NP_875392.1| transcriptional-repair coupling factor [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|33237978|gb|AAQ00045.1| Transcription-repair coupling factor [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 1170
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 271/626 (43%), Positives = 401/626 (64%), Gaps = 18/626 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
+R + K PR ++KL T W + K + K +I ++ +DL++LY R + +PK+ P
Sbjct: 541 YRNSSDKSPR-INKLGGNT-WTKAKERAKKSISRVAIDLIKLYAERSNSQGFSFPKDGPW 598
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPYE TPDQ KA +++ D+ E+ PMDRL+CGDVGFGKTEVA+RA+F ++A
Sbjct: 599 QRELEEAFPYEATPDQIKAVSEIKSDM-EKSFPMDRLVCGDVGFGKTEVAIRALFKAITA 657
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +LAPT VLA+QH+ +++RF+ YP IKV LL+RF+S +EK+E +K+G ++ I
Sbjct: 658 GKQVAILAPTTVLAQQHWRTLTDRFAPYP-IKVSLLNRFKSSSEKKEIAKSLKNGTIDAI 716
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLLVVDEEQRFGV QKEKI S K ++DVLTL+ATPIPRTLY++L
Sbjct: 717 VGTHLLLSKNIEYKDLGLLVVDEEQRFGVNQKEKIKSLKKNIDVLTLTATPIPRTLYMSL 776
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP+R IKTHL + E + SAI E+ RGGQ+FYV+PRI+G+EE
Sbjct: 777 SGVREMSLITTPPPQRRAIKTHLVSKENEIIRSAICQEIGRGGQIFYVVPRIEGIEEVAT 836
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
++Q P + + IAHGQ +LE M F G +++CT I+ESGLDI NTI+++D
Sbjct: 837 EIKQMVPNIKLIIAHGQMNEGELENAMIAFNAGEADLMLCTTIIESGLDIPRVNTILIED 896
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ +AHA+LF+P +++ A +RL A++E ELG G+QLA
Sbjct: 897 AHKFGLSQLYQLRGRVGRSGVQAHAWLFFPQDKEVTNNASQRLKAIQEFSELGSGYQLAM 956
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G QQ+G + +G DL+ E+L ES++++ + V + ++D+ I
Sbjct: 957 RDMEIRGVGNLIGIQQSGQMEIIGFDLYMEILHESIAEIQGQTIPVV--EETKVDLPITA 1014
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 556
+P+ +I E + +A + + D L++ T +YG P +E IL+ KL +
Sbjct: 1015 FIPNTWIKSNEEKLTAYKQASECSTID--KLLELTAIWIDRYGVLPAPVEALILIMKLKI 1072
Query: 557 RRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLE 616
+ A G ++I + + ++T MN+ F + D + +H + ++ Q +E+ L
Sbjct: 1073 KSKAC--GFSRIRLNKPNIVLETMMNESTFSSLRDGLEGHLH-GRVIYKAGQSFSEVTLR 1129
Query: 617 ----LPREQLLNWIFQCLAELYASLP 638
LP E L I + L + LP
Sbjct: 1130 GLGILPLESHLETIIEWLENMSNQLP 1155
>gi|254527187|ref|ZP_05139239.1| transcription-repair coupling factor [Prochlorococcus marinus str.
MIT 9202]
gi|221538611|gb|EEE41064.1| transcription-repair coupling factor [Prochlorococcus marinus str.
MIT 9202]
Length = 1169
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 266/595 (44%), Positives = 386/595 (64%), Gaps = 9/595 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKK 96
T WER K K K I+K+ VD+++LY R K K YP++ P E FPY+PTPDQ
Sbjct: 561 TEWERIKDKNKKQIKKVAVDILKLYAKREKLKGYIYPEDGPWQDELEESFPYQPTPDQIT 620
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A +++ D+ E + PMDRL+CGDVGFGKTEVA+RAIF +++GKQ ++LAPT +LA+QH+
Sbjct: 621 AVEEIKSDM-ESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQVILLAPTTILAQQHW 679
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
++ RFS YP IKV LL+RF++ E+ E +K+ ++++V TH +LG NLGL
Sbjct: 680 RTINNRFSPYP-IKVSLLNRFKTVNERNEIYAGLKNNEIDLVVATHQILGKETEIKNLGL 738
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV+QKEKI K ++DVLTLSATPIPRTLY++L+G R SL++TPPP R
Sbjct: 739 LVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRS 798
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
IKT+LS + + +AI ELDRGGQ+FYVLPRI +++ ++ L+ FP + +AHGQ
Sbjct: 799 IKTYLSEIDMDVIRTAINQELDRGGQIFYVLPRISDIDQAVNKLKIMFPSLKFIVAHGQM 858
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE M F G + ++ICT I+ESGLDI NTII++D +FGL+QLYQLRGRVGR
Sbjct: 859 NETELENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHKFGLSQLYQLRGRVGR 918
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ +AHA+LFYP+ + ++D A +RL A+++ ELG G+QLA KDM IRG G++ GE+Q+G
Sbjct: 919 SGVQAHAWLFYPNINKINDAAKQRLKAIKDFSELGSGYQLAMKDMEIRGVGSLLGEEQSG 978
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
V +G DL+ EML E++S++ + V QID+ IN +P+ +I + E +E
Sbjct: 979 KVNAIGYDLYIEMLHEAISEISGQEIPEV--NDTQIDLPINAFIPATWILNREEKLEAYK 1036
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVG 576
A + + D L + +YG P +E L+ + ++ +A G KI +
Sbjct: 1037 SATECSNND--ELTELATDWVNRYGNLPKPVESLIMIMRLKLLAKKCGFNKIKLKKPNIV 1094
Query: 577 MKTNMNKKVFKMMIDSMTSEVHRNSLTF-EGDQIKAELLLELPREQLLNWIFQCL 630
++T + FK++ +S+ S V +N F EG+Q + L ++ N I Q +
Sbjct: 1095 IETKLKNSTFKILKNSLASSV-QNKFNFNEGEQFSIITIRGLGATEIQNQIDQLM 1148
>gi|157413397|ref|YP_001484263.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9215]
gi|157387972|gb|ABV50677.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9215]
Length = 1169
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 266/595 (44%), Positives = 387/595 (65%), Gaps = 9/595 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKK 96
T WER K K K I+K+ VD+++LY R K K YP++ P E FPY+PTPDQ
Sbjct: 561 TEWERIKDKNKKQIKKVAVDILKLYAKREKLKGYIYPEDGPWQDELEESFPYQPTPDQIT 620
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A +++ D+ E + PMDRL+CGDVGFGKTEVA+RAIF +++GKQ ++LAPT +LA+QH+
Sbjct: 621 AVEEIKSDM-ESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQVILLAPTTILAQQHW 679
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
++ RFS YP IKV LL+RF++ E++E +K+ ++++V TH +LG + NLGL
Sbjct: 680 RTINNRFSPYP-IKVSLLNRFKTVNERKEIYAGLKNNKIDLVVATHQILGKEIEIKNLGL 738
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV+QKEKI K ++DVLTLSATPIPRTLY++L+G R SL++TPPP R
Sbjct: 739 LVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRS 798
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
IKT+LS + + +AI ELDRGGQ+FYVLPRI +++ ++ L+ FP + +AHGQ
Sbjct: 799 IKTYLSEIDMDVIRTAINQELDRGGQIFYVLPRISDIDQAVNKLKIMFPSLKFIVAHGQM 858
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
LE M F G + ++ICT I+ESGLDI NTII++D +FGL+QLYQLRGRVGR
Sbjct: 859 NETDLENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHKFGLSQLYQLRGRVGR 918
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ +AHA+LFYP+ + ++D A +RL A+++ ELG G+QLA KDM IRG G++ GE+Q+G
Sbjct: 919 SGVQAHAWLFYPNINKINDAAKQRLKAIKDFSELGSGYQLAMKDMEIRGVGSLLGEEQSG 978
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
V +G DL+ EML E++S++ + V QID+ IN +P+ +I + E +E
Sbjct: 979 KVNAIGYDLYIEMLHEAISEISGQEIPEV--NDTQIDLPINAFIPATWILNREEKLEAYK 1036
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVG 576
A + + D L + +YG P +E L+ + ++ +A G KI +
Sbjct: 1037 SATECSNND--ELTELATDWVNRYGNLPKPVESLIMIMRLKLLAKKCGFNKIKLKKPNIV 1094
Query: 577 MKTNMNKKVFKMMIDSMTSEVHRNSLTF-EGDQIKAELLLELPREQLLNWIFQCL 630
++T + FK++ +S+ S V +N F EG+Q + L ++ N I Q +
Sbjct: 1095 IETKLKNSTFKILKNSLASSV-QNKFNFNEGEQFSIITIRGLGATEIQNQIDQLM 1148
>gi|37523406|ref|NP_926783.1| transcription-repair coupling factor [Gloeobacter violaceus PCC 7421]
gi|35214410|dbj|BAC91778.1| transcription-repair coupling factor [Gloeobacter violaceus PCC 7421]
Length = 1154
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 268/613 (43%), Positives = 394/613 (64%), Gaps = 15/613 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYE 89
LS++ + +WE+ K K K AIQK+ DL++LY R ++ R P+P + P E FPY
Sbjct: 550 LSRMG-SKSWEKTKQKVKKAIQKIAFDLLDLYARRAQESRIPFPPDQPWQREMEESFPYP 608
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ +A +V+ D+ E E PMDRL+CGDVGFGKTEVA+RA F +++G Q VL PT
Sbjct: 609 LTPDQARAIQEVKIDM-ESERPMDRLVCGDVGFGKTEVAIRAAFKALTSGVQCAVLVPTT 667
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
VLA QH+ ERF+ YP I +GLL+RF++ +EK++ L + G L++++GTH LLG+ V
Sbjct: 668 VLASQHYHTFKERFAPYP-ISIGLLNRFRTASEKKDLLARLATGELDLVIGTHQLLGAGV 726
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ NLGLLV+DEEQRFGV QKEKI + K VDVLTL+ATPIPRTLY++L+G R+ SLI+T
Sbjct: 727 RFQNLGLLVIDEEQRFGVAQKEKIKTLKTQVDVLTLTATPIPRTLYMSLSGVREMSLITT 786
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PPP R PIKTHL+ + E V +AI EL RGGQ+FYV RI+ +++ LQ P +
Sbjct: 787 PPPSRRPIKTHLAPYDPEHVRTAILQELGRGGQIFYVYNRIEDIQDVAARLQAMIPTARV 846
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+ HGQ +LE TM F+ G IL+CT I+ESGLDI NTI+V++ QFGL+QLYQ
Sbjct: 847 CVGHGQMEEGELESTMLAFSGGEFDILVCTTIIESGLDIPRVNTILVENAHQFGLSQLYQ 906
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR+ +AHA++FY + L+D+A +RL A++E +LG G+QLA +DM IRG G +
Sbjct: 907 LRGRVGRSGVQAHAWMFYKQEEALTDEARKRLRAIQEFTQLGSGYQLAMRDMEIRGVGNL 966
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G +Q+G + +G DL+ E+L E++ ++ + V + QID+ + +P++YI LE
Sbjct: 967 LGAEQSGQLNAIGFDLYMELLEEAIQEIRGRKLPKV--EDTQIDLRVTAFIPADYIPDLE 1024
Query: 510 NPMEMVNEAEKAAE--QDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITK 567
M + A + Q +++TE +YG P + + LL+ + ++++A +G +
Sbjct: 1025 QKMRAYRQVAAAPDRAQLQAAALEWTE----RYGPVPPAAQQLLRVMELKQVARALGFAR 1080
Query: 568 IYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIF 627
I G + ++T M ++ + ++ +EV R F+ ++ L LP Q L +
Sbjct: 1081 IRPEGTNIVLETPMEAPAWEQIHQALPAEV-RGRFFFQPGKVTVRNLGVLPSAQQLENLV 1139
Query: 628 QCLAELYASLPAL 640
Q L ++ LP+L
Sbjct: 1140 QWLDKV--QLPSL 1150
>gi|78779345|ref|YP_397457.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9312]
gi|78712844|gb|ABB50021.1| transcription-repair coupling factor [Prochlorococcus marinus str.
MIT 9312]
Length = 1174
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 260/572 (45%), Positives = 381/572 (66%), Gaps = 9/572 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKK 96
T WER K K K I+K+ VD+++LY R K K YP++ P E FPY+PTPDQ
Sbjct: 561 TEWERIKDKNKKQIKKVAVDILKLYAKREKLKGHIYPEDGPWQDELEESFPYQPTPDQIT 620
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A +++ D+ E + PMDRL+CGDVGFGKTEVA+RAIF +++GKQ ++LAPT +LA+QH+
Sbjct: 621 AVKEIKSDM-ESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQVILLAPTTILAQQHW 679
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
++ RFS YP IKV LL+RF++ E++E +K+ ++++V TH +LG + NLGL
Sbjct: 680 RTINNRFSPYP-IKVSLLNRFKTVNERKEIYAGLKNNKIDLVVATHQILGKEIEIKNLGL 738
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV+QKEKI K ++DVLTLSATPIPRTLY++L+G R SL++TPPP R
Sbjct: 739 LVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRS 798
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
IKT+LS + + +AI ELDRGGQ+FYVLPRI +++ ++ L+ FP + IAHGQ
Sbjct: 799 IKTYLSEIDMDVIRTAINQELDRGGQIFYVLPRISDIDQAVNKLKNMFPNLKFIIAHGQM 858
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE +M F G + ++ICT I+ESGLDI NTII++D +FGL+QLYQLRGRVGR
Sbjct: 859 NETELENSMISFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHKFGLSQLYQLRGRVGR 918
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ +AHA+LFYP+ + ++D A +RL A+++ ELG G+QLA KDM IRG G++ GE+Q+G
Sbjct: 919 SGIQAHAWLFYPNLNKINDSAKQRLKAIKDFSELGSGYQLAMKDMEIRGVGSLLGEEQSG 978
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
V +G DL+ EML E++S++ + V QID+ IN +P+ +I + E ++
Sbjct: 979 KVNAIGYDLYIEMLHEAISEISGQEIPEVS--DTQIDLQINAFIPATWILNREEKLDAYK 1036
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVG 576
A + + L + + +YG P +E L+ + ++ +A G KI +
Sbjct: 1037 SATECSNNK--ELTELAKDWINRYGTLPKPVESLIMLMKLKLIAKKCGFNKIKLKKPNII 1094
Query: 577 MKTNMNKKVFKMMIDSMTSEVHRNSLTF-EGD 607
++T + K FK++ +S+ + V +N F EG+
Sbjct: 1095 IETKLRKSTFKILKNSLPNSV-QNKFNFNEGE 1125
>gi|113475354|ref|YP_721415.1| transcription-repair coupling factor [Trichodesmium erythraeum
IMS101]
gi|110166402|gb|ABG50942.1| transcription-repair coupling factor [Trichodesmium erythraeum
IMS101]
Length = 1180
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 276/625 (44%), Positives = 400/625 (64%), Gaps = 15/625 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
R + K+P+ L+KL+ T WE K K + +I+K+ VDL++LY R +Q +P + P
Sbjct: 553 LRSTDHKKPQ-LNKLTGKT-WESTKNKVRKSIKKLAVDLLKLYAQRAQQTGYSFPPDTPW 610
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ KA DV+RD+ E E MDRL+CGDVGFGKTEVA+RAIF V A
Sbjct: 611 QEEMEDSFPYQPTPDQLKATQDVKRDM-ESERAMDRLVCGDVGFGKTEVAIRAIFKAVIA 669
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ LAPT VL +QH+ + ERF+ YP I++GLL+RF++ EK+E + G L+II
Sbjct: 670 EKQVAFLAPTTVLTQQHYHTLKERFAPYP-IEIGLLNRFRTPNEKKEIQHRLATGELDII 728
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTHS+L + + LGLLVVDEEQRFGV QKEKI + K VDVLTL+ATPIPRTLY+AL
Sbjct: 729 VGTHSILSKTIQFRELGLLVVDEEQRFGVNQKEKIKALKAEVDVLTLTATPIPRTLYMAL 788
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ S+I+TPPP R PIKTHL+ + E +AI+ EL+RGGQVFYV+PRI+G+EE
Sbjct: 789 SGIREMSVITTPPPLRRPIKTHLAPYDLETARTAIRQELNRGGQVFYVVPRIEGIEELAG 848
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ PG I I HG+ + +LE M F+ G IL+CT I+ESGLDI NTI+++D
Sbjct: 849 KLREMIPGARINIGHGKMDAAELESIMLTFSAGEADILVCTTIIESGLDIPRVNTILIED 908
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS----LLSDQALERLAALEECRELGQGF 434
Q+FGL+QLYQLRGRVGRA +AHA+LFYP S L+D A +RL A++E +LG G+
Sbjct: 909 AQKFGLSQLYQLRGRVGRAGVQAHAWLFYPTTSSGGIALTDDAQKRLRAIQEFTQLGSGY 968
Query: 435 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 494
LA +D+ IRG G I G +Q+G V +G DL+ EML E++ ++ + V +ID+
Sbjct: 969 HLAIRDLEIRGAGDILGAEQSGQVNAIGFDLYTEMLEEAIREIKGQEIPQV--DDTKIDL 1026
Query: 495 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
++ +P++YI L+ + A ++ L Q +YG P + LL+ +
Sbjct: 1027 SLTAFIPADYILDLDQKISAYRSVAAANTRE--ELSQIEVDWSDRYGAIPKAGLQLLRMM 1084
Query: 555 YVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL 613
++++A IG ++I GK V ++T M + + ++ + + + ++ F ++
Sbjct: 1085 ELKQVAKKIGFSRIKVEGKQHVILETPMEEPGWNLLKEKLPGHL-QSRFVFSKGKVIVRG 1143
Query: 614 LLELPREQLLNWIFQCLAELYASLP 638
L L ++ L + + L+++ ++P
Sbjct: 1144 LGVLSADKQLESLIEWLSKMEGAIP 1168
>gi|434387013|ref|YP_007097624.1| transcription-repair coupling factor Mfd [Chamaesiphon minutus PCC
6605]
gi|428018003|gb|AFY94097.1| transcription-repair coupling factor Mfd [Chamaesiphon minutus PCC
6605]
Length = 1137
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 271/607 (44%), Positives = 392/607 (64%), Gaps = 13/607 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR +P L++LS AWE+ K K K +I+K+ DL++LY R +++ +P + P
Sbjct: 520 FRQAAGAKPE-LNRLSGQ-AWEKTKAKVKKSIKKLAFDLLKLYAERSQKEGFAFPPDAPW 577
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF-CVVS 137
E F Y+PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAIF V +
Sbjct: 578 QQELEDSFRYQPTPDQLKATQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTT 636
Query: 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 197
A KQ + LAPT +L +QH+ + ERF+ YP I +GLL+RF++ E+++ L +K G L+I
Sbjct: 637 ANKQVIFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTAEERKDILQRLKTGELDI 695
Query: 198 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 257
++GTH LL + + +LGLL +DEEQRFGV QKEKI + K +DVLTLSATPIPRTLY++
Sbjct: 696 VIGTHQLLSKELKFKDLGLLTIDEEQRFGVNQKEKIKTLKSQIDVLTLSATPIPRTLYMS 755
Query: 258 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
L+G R+ SLI+TPPP R PI THLS + + + +AI+ ELDRGGQ+FYV+P+I+G+EE
Sbjct: 756 LSGVREMSLITTPPPSRRPIATHLSPYKIDAIATAIRQELDRGGQIFYVVPKIEGIEETA 815
Query: 318 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 377
+++ P IAIAHGQ +LE TM F+ G +L+CT I+ESGLDI NTI+V+
Sbjct: 816 GKIREQIPSCRIAIAHGQMDEAELESTMLTFSNGDADLLVCTTIIESGLDIPRVNTILVE 875
Query: 378 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 437
D +FGLAQLYQLRGRVGRA +AHA+LFYP +S LS+ A +RL A++E +LG G+QLA
Sbjct: 876 DAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKESTLSETARQRLKAIQEFTQLGSGYQLA 935
Query: 438 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 497
+DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V QID+ +
Sbjct: 936 TRDMEIRGVGNLLGAEQSGQMDVIGFDLYMEMLQEAIKEIRGQEIPQV--DDTQIDLKVT 993
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+P++YI LE M AA L +YG+ P + L + + ++
Sbjct: 994 AMIPADYIADLEQKMSAYRAV--AAADTKQELTNIAAEWHDRYGEIPKPAQQLFRIVELK 1051
Query: 558 RMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLE 616
++A +G ++I GK V ++T M + + ++ + + R+ + ++ A L
Sbjct: 1052 QIAKQLGFSRIRPDGKQHVILETPMAEPAWNLLAEYIPDNA-RSRYVYSTGKVTARGLGV 1110
Query: 617 L-PREQL 622
L P EQ+
Sbjct: 1111 LRPNEQV 1117
>gi|443475907|ref|ZP_21065838.1| transcription-repair coupling factor [Pseudanabaena biceps PCC 7429]
gi|443019192|gb|ELS33321.1| transcription-repair coupling factor [Pseudanabaena biceps PCC 7429]
Length = 1136
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 268/562 (47%), Positives = 366/562 (65%), Gaps = 8/562 (1%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQFPYEPTPDQKKA 97
AW K K AI+K+ DL+ELY R +Q +P NP E FPY+ TPDQ KA
Sbjct: 540 AWTNTTNKAKKAIKKIAFDLLELYAKRSQQVGYAFPPDNPWQQEMEDSFPYQATPDQLKA 599
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157
DV++D+ E PMDRL+CGDVGFGKTEVA+R IF V+ GKQA +L PT +LA+QH+
Sbjct: 600 TQDVKQDM-ESSRPMDRLVCGDVGFGKTEVAIRTIFKAVTTGKQAALLVPTTILAQQHYH 658
Query: 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217
+ ER++ YP I + LL+RF++K EK+E +K G L+I+VGTH LL V + +LGLL
Sbjct: 659 SLQERYAAYP-INIALLNRFRTKVEKKEICRKLKTGELDIVVGTHQLLSKDVEFKDLGLL 717
Query: 218 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 277
V+DEEQRFGV QKEKI + K VDVLTLSATPIPRTLY+A++G R+ SLI+TPPP R I
Sbjct: 718 VIDEEQRFGVAQKEKIKTMKTEVDVLTLSATPIPRTLYMAMSGVREMSLITTPPPSRRSI 777
Query: 278 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 337
THLS ++ E V +AI+ ELDRGGQ+FYV+ RI +EE + + P V +AIAHGQ
Sbjct: 778 MTHLSRYNPELVRAAIRQELDRGGQIFYVVSRIDDIEEVSARVHEMLPSVRMAIAHGQMP 837
Query: 338 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 397
+LE TM F+ G ++ICT I+ESGLDI NTII++D Q+FGLAQLYQLRGRVGRA
Sbjct: 838 ESELESTMLNFSSGESDMMICTTIIESGLDIPRVNTIIIEDAQRFGLAQLYQLRGRVGRA 897
Query: 398 DKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 457
+AHA+LFY +K L+D A +RL A++E LG G+QLA +DM IRG G + G +Q+G
Sbjct: 898 GIQAHAWLFYQEKGELTDIARKRLKAIQEFTHLGSGYQLAMRDMEIRGVGNLLGAEQSGQ 957
Query: 458 VGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE 517
+ +G DL+ EML E+++++ + V + Q+D+ I +P+EYI + M
Sbjct: 958 INTIGFDLYMEMLQEAIAEIRGSEIPEV--EDTQVDLPITAFIPTEYIPDGDRKMSAYRT 1015
Query: 518 AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM-VG 576
+ + LMQ E R YGK P L+K + ++ +A IG +I GK V
Sbjct: 1016 VASVSSRR--ELMQIIEEWRDCYGKVPVPAMQLIKVMELKLLAKRIGFFRIKPEGKQHVV 1073
Query: 577 MKTNMNKKVFKMMIDSMTSEVH 598
+++ M + +K++ + S +
Sbjct: 1074 LESKMEEPAWKLLHQHLPSHLQ 1095
>gi|159903468|ref|YP_001550812.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9211]
gi|159888644|gb|ABX08858.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9211]
Length = 1169
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/623 (42%), Positives = 401/623 (64%), Gaps = 22/623 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
+R + K PR + KL T AW K K + +I K+ +DL+ LY R K + +P + P
Sbjct: 551 YRSSSDKSPR-IGKLGGT-AWLNAKEKARKSINKVAIDLIRLYAERNKTEGYSFPPDAPW 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+E F YEPT DQ A DV+ D+ E+ PMDRL+CGDVG+GKTEVA+RA+F + +
Sbjct: 609 QSELEDAFQYEPTHDQLTAIKDVKNDM-EKPKPMDRLVCGDVGYGKTEVAIRALFKAIIS 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQA +LAPT +L++QH+ +S+RF+ YP IK+ LL+RF++ EK ++ +K G ++++
Sbjct: 668 GKQAALLAPTTILSQQHWRTLSDRFAPYP-IKIALLNRFKTSREKNAIVEELKSGTIDLV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH +L ++V + +LGLLVVDEEQRFGVKQKE+I FK ++DVLTL+ATPIPRTLY++L
Sbjct: 727 VGTHLILSNKVCFKDLGLLVVDEEQRFGVKQKERIKQFKKNIDVLTLTATPIPRTLYMSL 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ SLI+TPPP R IKTHL + +E + SAI E+DRGGQ+FYV+PRI+G+ +
Sbjct: 787 SGVREMSLITTPPPLRRAIKTHLIPYEEEAIRSAICQEIDRGGQIFYVVPRIEGITDIAT 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L P + I IAHGQ +LE +M F +++CT IVESGLDI NTI+++D
Sbjct: 847 KLSNMIPKIRILIAHGQMDEGELESSMIAFNDWEADLMLCTTIVESGLDIPRVNTILIED 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
QQFGL+QLYQLRGRVGR+ +AHA+L YP + ++D+A +RL A++E +LG G+QL+
Sbjct: 907 AQQFGLSQLYQLRGRVGRSGVQAHAWLLYPSNTTINDKAKQRLQAIQEFSQLGSGYQLSM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G + G QQ+G + +G D++ EML E +S ++ H + V ID+ IN
Sbjct: 967 RDMEIRGVGNLIGLQQSGQMEAIGFDMYMEMLQECISDLEGHEIPKV--DETLIDLPINA 1024
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWC-----LMQFTESLRRQYGKEPYSMEILLKK 553
+P +I ++N ++ A KAA C L++ + +YG P + L++
Sbjct: 1025 FIPGNWI--VDNQEKI--SAYKAATD---CHTSGKLIELGLAWSDRYGALPKPVSSLMQV 1077
Query: 554 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL 613
+ ++ + +G ++I + ++T M + FK++ + + +H L +G+ L
Sbjct: 1078 MQIKLVGKSLGFSRIRQIKPNIILETKMKESTFKVLRNGIDKSLHSRILYKKGNSSSEVL 1137
Query: 614 LLEL---PREQLLNWIFQCLAEL 633
L L P E+ L+ +F+ L+++
Sbjct: 1138 LRGLANQPIEKQLDILFEWLSKM 1160
>gi|123966148|ref|YP_001011229.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9515]
gi|123200514|gb|ABM72122.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9515]
Length = 1175
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 249/569 (43%), Positives = 374/569 (65%), Gaps = 8/569 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAF 98
W + K K + I+K+ D+++LY R K K YP++ P E FPY+PTPDQ A
Sbjct: 564 WLKIKDKNRKIIKKVAYDILKLYAKREKLKGHIYPEDGPWQKELEESFPYQPTPDQLTAV 623
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E + PMDRL+CGDVGFGKTEVA+RAIF +++GKQ ++LAPT +LA+QH+
Sbjct: 624 KEIKIDM-ESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQVILLAPTTILAQQHWRT 682
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ RFS YP IKV LL+RF++ +EK++ +K+ ++++V TH +LG + NLGLLV
Sbjct: 683 FNNRFSPYP-IKVSLLNRFKTSSEKKDIYAGLKNNKIDLVVATHQILGKEIEIKNLGLLV 741
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV+QKEKI + K ++DVLTLSATPIPRTLY++L+G R SL++TPPP R IK
Sbjct: 742 IDEEQRFGVRQKEKIKNIKTNIDVLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRSIK 801
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T+LS + + +AI ELDRGGQ+FYVLPRI +++ ++ L F + +AHGQ
Sbjct: 802 TYLSEIDMDVIRTAISQELDRGGQIFYVLPRISDIDQAVNKLTNMFNDLKFIVAHGQMNE 861
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
LE M F G + ++ICT I+ESGLDI NTII++D +FGL+QLYQLRGRVGR+
Sbjct: 862 IDLENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHKFGLSQLYQLRGRVGRSG 921
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+AHA+LFYP+ + +++ + +RL A+++ ELG G+QLA KDM IRG G++ GE+Q+G V
Sbjct: 922 IQAHAWLFYPNLNNINEASKQRLKAIKDFSELGSGYQLAMKDMEIRGVGSLLGEEQSGKV 981
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+G DL+ EML E++S+++ + V K Q+D+ IN +P+ +I + E ++ EA
Sbjct: 982 NAIGYDLYIEMLHEAISEINGQEIPEV--KDTQVDLPINAFIPATWILNREEKLDAYKEA 1039
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMK 578
+ L + +YG P +E L+ + ++ +A G KI + ++
Sbjct: 1040 TECNTHK--ELTELATDWSNRYGVLPKPVESLILLMKLKLLAKKCGFNKIKLKKPNIIIE 1097
Query: 579 TNMNKKVFKMMIDSMTSEVHRNSLTFEGD 607
T + FK++ ++ + + +N +FE D
Sbjct: 1098 TRLKISTFKLIKKALPTNI-QNKFSFEED 1125
>gi|284928643|ref|YP_003421165.1| transcription-repair coupling factor [cyanobacterium UCYN-A]
gi|284809102|gb|ADB94807.1| transcription-repair coupling factor [cyanobacterium UCYN-A]
Length = 1151
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 255/556 (45%), Positives = 372/556 (66%), Gaps = 15/556 (2%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQFPYEPTPDQKKAF 98
W + K K + I+K+ +L+ LY R ++K YP + E FPY+ TPDQ +A
Sbjct: 556 WGKLKQKIRKNIKKLAFNLLHLYAERAQKKGYSYPADSLWQQELEDSFPYQATPDQVQAI 615
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHFD 157
+V+ DL E PMDRLICGDVGFGKTEVA+RAIF VV++G KQ + LAPT +L +QH++
Sbjct: 616 REVKIDL-ESNRPMDRLICGDVGFGKTEVAIRAIFKVVTSGHKQVVFLAPTTILTQQHYN 674
Query: 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217
+ RF+ YP I +GLL+RF++ +EK++ ++ + G L+I+VGT LLG + + +LGLL
Sbjct: 675 TLRTRFAPYP-ISIGLLNRFRTTSEKKDIIERLTTGELDIVVGTQQLLGKNIKFKDLGLL 733
Query: 218 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 277
V+DEEQRFGV KEKI + K +VDVLTL+ATPIPRTL+++L+G R+ SLISTPPP R I
Sbjct: 734 VIDEEQRFGVNHKEKIRTIKANVDVLTLTATPIPRTLHMSLSGIREMSLISTPPPSRRSI 793
Query: 278 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 337
KTHLS++ V +A++ ELDRGGQVFYV+PRI+ ++E + L++ P I +AHGQ
Sbjct: 794 KTHLSSYDPNLVKAAVRAELDRGGQVFYVVPRIEHIDELVLQLKRMIPDAKILVAHGQMD 853
Query: 338 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 397
LE TM F G IL+CT I+ESGLDI NTII++D Q+FGL+QLYQLRGRVGR+
Sbjct: 854 VNNLELTMLSFNNGDADILVCTTIIESGLDIPKVNTIIIEDAQKFGLSQLYQLRGRVGRS 913
Query: 398 DKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 457
+AHA+LFYP +S L+D AL+RL AL+E ELG G+ LA +D+ IRG G + G +Q+G
Sbjct: 914 GIQAHAWLFYPSRSELTDNALKRLNALQEFSELGSGYHLATRDLEIRGAGNLLGAEQSGQ 973
Query: 458 VGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPM---EM 514
+ +G +L+ +ML E++ +V + V + QID+ + +P++YI +E +
Sbjct: 974 MEAIGFELYMDMLQEAIKEVQGEKIPEV--EDTQIDLKLTAFIPNDYIADIEQKIIAYRT 1031
Query: 515 VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK- 573
V A E D+ + +++E +YG P ++ LLK + +++++ +G + I GK
Sbjct: 1032 VAVASSKKELDL-IVAEWSE----RYGSIPDPVKQLLKTIELKQLSKSLGFSHIKIEGKN 1086
Query: 574 MVGMKTNMNKKVFKMM 589
V +KT M + + ++
Sbjct: 1087 SVVLKTPMEEPAWIIL 1102
>gi|33861396|ref|NP_892957.1| transcriptional-repair coupling factor [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
gi|33633973|emb|CAE19298.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length = 1171
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 258/615 (41%), Positives = 387/615 (62%), Gaps = 9/615 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
+R + +PR ++KL T W + K K + I+K+ +D+++LY R K K +P++ P
Sbjct: 546 YRSSGKIKPR-INKLGGT-EWLKIKDKNRKIIKKVALDILKLYAKREKLKGHIFPEDGPW 603
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+ TPDQ A +V+ D+ E + PMDRL+CGDVGFGKTEVA+RAIF +++
Sbjct: 604 QKELEESFPYQATPDQITAVKEVKIDM-ESDKPMDRLVCGDVGFGKTEVAVRAIFKAITS 662
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ ++LAPT +LA+QH+ RFS YP IKV LL+RF++ EK++ + +K+ ++++
Sbjct: 663 GKQVILLAPTTILAQQHWRTFYNRFSPYP-IKVSLLNRFKTNTEKKDIYNGLKNNKIDLV 721
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
V TH +LG + NLGLLV+DEEQRFGV+QKEKI + K ++DVLTLSATPIPRTLY++L
Sbjct: 722 VATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKNIKTNIDVLTLSATPIPRTLYMSL 781
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R SL++TPPP R IKT+LS + + +AI ELDRGGQ+FYVLPRI +++ ++
Sbjct: 782 SGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAISQELDRGGQIFYVLPRISDIDQAVN 841
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L+ F + +AHGQ LE M F G + ++ICT I+ESGLDI NTI+++D
Sbjct: 842 KLKNMFKDLKYIVAHGQMNEIDLENAMIAFNNGEVDLMICTTIIESGLDIPRVNTIVIED 901
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ +AHA+LFYP+ + +++ + +RL A+++ ELG G+QLA
Sbjct: 902 SHKFGLSQLYQLRGRVGRSGIQAHAWLFYPNINKINEASKQRLKAIKDFSELGSGYQLAM 961
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
KDM IRG G++ GE+Q+G V +G DL+ EML E++S+++ V V Q+D+ IN
Sbjct: 962 KDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEINGQEVPEV--NDTQVDLPINA 1019
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P +I + E ++ A + L + +YG P +E L+ + ++
Sbjct: 1020 FIPGTWILNREEKLDAYKYATECTNHK--ELTELATDWTNRYGVLPKPVESLILLMKLKL 1077
Query: 559 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELP 618
+A G KI V ++T + FK++ + S + E DQ ++ L
Sbjct: 1078 LAKKCGFNKIKLKKPNVIIETRLKNSTFKLIKKGLPSNIQSKFNYEEDDQFSKIIIRGLG 1137
Query: 619 REQLLNWIFQCLAEL 633
+ N I Q + L
Sbjct: 1138 VTDIQNQIDQLIYWL 1152
>gi|443474467|ref|ZP_21064443.1| transcription-repair coupling factor [Pseudanabaena biceps PCC 7429]
gi|443020826|gb|ELS34742.1| transcription-repair coupling factor [Pseudanabaena biceps PCC 7429]
Length = 1113
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 261/615 (42%), Positives = 387/615 (62%), Gaps = 19/615 (3%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFA 83
+ +P L+ +++T AW+ +K + I K+ DL++LY+ R +P + E
Sbjct: 506 SNKPPKLNSIANTKAWDNALSKCQKEIYKLARDLLQLYVRRANLVGYAFPPDTDWQQEME 565
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
FPY+ TPDQ KA DV++D+ E + PMDRL+CGDVGFGKTEVA+RAIF + AGKQ
Sbjct: 566 DSFPYQLTPDQVKAVQDVKQDM-ESDRPMDRLVCGDVGFGKTEVAVRAIFKAICAGKQVA 624
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA+QHF + RF+ YP V +++RF+ E+++ L + G + +IVGTH
Sbjct: 625 LLAPTTILAQQHFHTLQTRFAAYP-FTVEIVNRFRPAKERKQVLQHVADGKVQVIVGTHQ 683
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LL V +++LGLLV+DEEQRFG QKEKI + K VD+LTLSATPIPRTLY AL+G R+
Sbjct: 684 LLSKDVEFHDLGLLVIDEEQRFGTLQKEKIKAMKGDVDLLTLSATPIPRTLYAALSGVRE 743
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPPP R I+THLSA+ V +AI++ELDRGGQVFYV+PRI+G+E D L+
Sbjct: 744 MSVIATPPPSRRSIQTHLSAYDASLVKTAIRHELDRGGQVFYVVPRIEGIEAIADSLRLM 803
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V +AIAHGQ +LE M F IL+CT I+ESGLDI NTI+++D + G
Sbjct: 804 LPNVRLAIAHGQMQESELEAAMVAFNNNEADILLCTTIIESGLDIPRVNTIVIEDAHKLG 863
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
LAQLYQLRGRVGRA +AHAYL YP L+D A +RL A++E +LG G+QLA +DM I
Sbjct: 864 LAQLYQLRGRVGRAGIQAHAYLLYPPNLELTDAAKKRLDAIQEFSQLGSGYQLAMRDMEI 923
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL--- 500
RG G + GE+Q+G +G L+ ++L E ++++ + V +Q+ PRL
Sbjct: 924 RGLGDLLGEEQSGQADVIGFALYMDLLQEYINELRGKILPEVADTELQL-----PRLVAF 978
Query: 501 -PSEYINHLENPMEM-VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
P YI E + + A+ ++++I L E L YG P ++LL+ + ++
Sbjct: 979 IPDSYIEDNETKINAYLTLAKVKSKEEILKLAAVWEGL---YGALPEETQVLLRVMELKL 1035
Query: 559 MAADIGITKIYAS--GKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLE 616
+A +G+ +IY+S G+ + + + + +++++ + E + +FE +IK L
Sbjct: 1036 VARQVGVFRIYSSEDGRDLFLDSKLTDSLWELLHAKIPIEFYYR-FSFEKGRIKITSLAL 1094
Query: 617 LPREQLLNWIFQCLA 631
LP ++ ++++ + L
Sbjct: 1095 LPGDKQVHFLIEWLG 1109
>gi|145346965|ref|XP_001417951.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578179|gb|ABO96244.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 754
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 264/643 (41%), Positives = 407/643 (63%), Gaps = 32/643 (4%)
Query: 16 FCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP- 74
FC P +P L+KL+D + W+ R+ K + I+++VV+ M +YL RL+ R PYP
Sbjct: 128 FC---SPGGLVKPPKLNKLNDKSTWDLRERKTEATIRRLVVNQMVVYLQRLQCVREPYPL 184
Query: 75 KNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133
+P A +F A FP+ TPDQ A ++ DL +++ PMDRL+ GDVGFGKTEVA+RA+F
Sbjct: 185 PDPERAKQFDASFPFTLTPDQTSAIQEITEDL-QQDAPMDRLVIGDVGFGKTEVAMRAMF 243
Query: 134 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 193
V S+G ++APT VLAKQH ++ RF I V L++R A++ D + G
Sbjct: 244 HVASSGGGVFMMAPTTVLAKQHAANLAVRFRPL-GINVELVTRHIQAAKQNTIFDDFRDG 302
Query: 194 HLNIIVGTHSLLG-SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 252
+ IIVGTH L+ + Y L LLV+DEEQRFGVK K++I++ K VDVLTLSATPIPR
Sbjct: 303 KVQIIVGTHKLVNLEQEYYKQLRLLVIDEEQRFGVKHKDQISALKAEVDVLTLSATPIPR 362
Query: 253 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 312
TL++A++GFRDASL+ TPPPER PI T L+ + + + AI+YE+ R GQ++Y++PRI
Sbjct: 363 TLHMAMSGFRDASLVQTPPPERRPINTVLAPQNDDDIRKAIEYEISRNGQIYYIVPRINM 422
Query: 313 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 372
+ + D L + FP + I AHGQ +++ ME F+ G+ +LI T IVESGLDI N N
Sbjct: 423 MRDACDRLLRLFPNLQIMTAHGQMDGEAIDDAMESFSNGSADVLIATTIVESGLDIPNCN 482
Query: 373 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELG 431
TII+++VQ FGLA LYQLRGRVGRA ++A+AY+FY D+S L+ A ERLAALEEC LG
Sbjct: 483 TIIIENVQFFGLASLYQLRGRVGRAGRQAYAYMFYSADESELTTGAQERLAALEECCGLG 542
Query: 432 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 491
+GF+L+E+DMGIRG GT+FGE+Q+GDV +VG DL+ E+L++ L ++D + ++ V+
Sbjct: 543 EGFRLSERDMGIRGVGTMFGEKQSGDVDSVGADLYLELLYKQLQRIDNLRIKTIDADDVR 602
Query: 492 I-----DININPRL--PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGK-E 543
+ + I P +E + ++ ++ + E+ D+ LM R +G+ +
Sbjct: 603 VGAAGYEFGITPFYIATTEASDEVKATIDSITAHEQV--HDVLALM------RDTFGEPD 654
Query: 544 PYSMEILLKKLYVRRMAADIGITKIY---ASGKMVGMKTNMNKKVFKMMIDSMTSEVHRN 600
+S+ + + +R +A D+GI I + ++ + T+ + V +++++ + S+ +
Sbjct: 655 EFSLSCVFAR-EMRILAGDLGIQGILLDSPTAPIIDLITDASIMVKELLVEGI-SDAYDV 712
Query: 601 SLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 643
+ G I+ + + ++ + + + L ++ S+P+ +KY
Sbjct: 713 EIIDTG--IRLKTMTDMTMHGKVMYTVKILRQITGSIPSFVKY 753
>gi|255071025|ref|XP_002507594.1| predicted protein [Micromonas sp. RCC299]
gi|226522869|gb|ACO68852.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 570
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 241/479 (50%), Positives = 327/479 (68%), Gaps = 5/479 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY--PKNPAIAEFAAQFPY 88
LS++ D WE+R+ + I+ +V+ M +YL RL+ R PY P F FP+
Sbjct: 92 LSRIKDRKRWEQRENIARKHIRHLVMGQMSIYLQRLQSVRKPYCPPSEDIYQRFNELFPH 151
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
+ TPDQ A D DLTER+TPMDR+I GDVGFGKTEVA+RA+F V S G Q VLAPT
Sbjct: 152 DLTPDQALAVQDCYEDLTERDTPMDRIIVGDVGFGKTEVAMRAVFRVFSGGGQIFVLAPT 211
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-S 207
VLAKQH ++ R + + L++R +AEK++ ++ G ++++VGTHSLL
Sbjct: 212 TVLAKQHAATMTARLRPF-GASIDLMTRNVKEAEKKDIIERWLAGRIHVLVGTHSLLNLP 270
Query: 208 RVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI 267
+Y+ L LLV+DEEQRFGVK K+KI+S K SVDVLTLSATPIPRTL++A+ GFRDASL+
Sbjct: 271 STMYDPLNLLVIDEEQRFGVKHKDKISSLKSSVDVLTLSATPIPRTLHMAMAGFRDASLV 330
Query: 268 STPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGV 327
+TPPPER PI T L + + V AI+YEL RGGQ+FYV+PRI+ + L++ F +
Sbjct: 331 TTPPPERRPIITRLQVYEQSVVHQAIQYELGRGGQIFYVVPRIQMMNAAKKRLKEIFQDI 390
Query: 328 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 387
I HGQ L+ M++FA G IL+CT IVESGLDI N NTIIV++VQQFGLA L
Sbjct: 391 IILEVHGQMKGEYLDHAMDEFASGRAHILLCTTIVESGLDIPNVNTIIVEEVQQFGLASL 450
Query: 388 YQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFG 447
YQLRGRVGRA ++A+AY+F+ ++ + + A ERL ALEEC LG+GF+LAE+DM IRG G
Sbjct: 451 YQLRGRVGRAGRQAYAYMFHAERGGMHNDAQERLLALEECCGLGEGFRLAERDMAIRGVG 510
Query: 448 TIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI-NINPRLPSEYI 505
T+FGE+Q+G++ ++G DL+ E L+E L K++ + + V + + P+L EY+
Sbjct: 511 TLFGEKQSGEMDSIGADLYLEFLYEQLEKIEMLSLNPITPSEVHVPVFPTVPKLTREYV 569
>gi|339626513|ref|YP_004718156.1| transcription-repair coupling factor [Sulfobacillus acidophilus TPY]
gi|379005970|ref|YP_005255421.1| transcription-repair coupling factor [Sulfobacillus acidophilus DSM
10332]
gi|339284302|gb|AEJ38413.1| transcription-repair coupling factor [Sulfobacillus acidophilus TPY]
gi|361052232|gb|AEW03749.1| transcription-repair coupling factor [Sulfobacillus acidophilus DSM
10332]
Length = 1172
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 252/597 (42%), Positives = 372/597 (62%), Gaps = 13/597 (2%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E + PR LSK+ W R K K K ++++M +L++LY R + Y P P AEF
Sbjct: 554 EGQEPR-LSKMGGQE-WTRTKEKVKASVREMAEELLKLYAKREAEPGIAYGPDTPWQAEF 611
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
A FPYE TPDQ +A D++RD+ ER PMDRL+CGDVG+GKTEVALRA F + GKQ
Sbjct: 612 EAAFPYEETPDQLRAIDDIKRDM-ERARPMDRLLCGDVGYGKTEVALRAAFKAIMGGKQV 670
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QH+ R + YP + V +LSRF++ +++E L +K G ++++VGTH
Sbjct: 671 AFLVPTTLLAEQHYQTAKSRLAGYP-VTVEVLSRFRTPKQQKEILARVKKGQVDLLVGTH 729
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V + +LGLL+VDEE RFGV KE+I + K +VDVLTL+ATPIPRTL++AL G R
Sbjct: 730 RLLAKDVQFQDLGLLIVDEEHRFGVAHKERIKALKGNVDVLTLTATPIPRTLHMALVGIR 789
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP +RLP++T ++ + ++ V AI+ ELDRGGQVFYV RI+ ++ ++ L +
Sbjct: 790 DMSVIETPPEDRLPVETVVAEYDEDLVREAIRRELDRGGQVFYVQNRIRSMDRTVEHLMK 849
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
FPG+ +A+ HGQ ++E+ M +F + IL+ TNI+ESGLDI NANT+IV+D +
Sbjct: 850 LFPGIRLAVVHGQMEENRIEDVMARFIEQEYDILVTTNIIESGLDIPNANTLIVEDADKM 909
Query: 383 GLAQLYQLRGRVGRADKEAHAYL-FYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GLAQLYQLRGRVGR+ + A+AY F+PDK +L+ A +RL A+ E ELG G+Q+A +D+
Sbjct: 910 GLAQLYQLRGRVGRSSRLAYAYFTFHPDK-VLTPAAEKRLEAIREFTELGAGYQIALRDL 968
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G +Q G + VG DL+ +ML +++ ++ V P I+I ++ LP
Sbjct: 969 EIRGAGNLLGAEQHGFIATVGFDLYTQMLAQAVQELKGEPV-ETPVDPT-IEIAVDAYLP 1026
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
+Y+ +EM A + + + E + ++G P S+ L++ VR +A
Sbjct: 1027 DDYVPDPRQKIEMYKRLVSA--KSLAEVEALAEEIEDRFGTAPASVTALVQLSRVRVLAR 1084
Query: 562 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELP 618
D+ +T++ G + + + +V I + S G Q EL ++LP
Sbjct: 1085 DVRLTQVSHKGDRILLGGGPDSRVGPEAIQRLASRF--PGRLIPGTQRAPELGIKLP 1139
>gi|412985535|emb|CCO18981.1| transcription-repair coupling factor [Bathycoccus prasinos]
Length = 1143
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 239/465 (51%), Positives = 326/465 (70%), Gaps = 10/465 (2%)
Query: 22 PNETKRPRTLSKLSDT-TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY--PKNPA 78
P +P LSKL D +WE ++ + + I+ +VV M +YL RL+ R PY K
Sbjct: 482 PGAQVKPPRLSKLYDKLGSWEAKEAQMQKQIRDLVVHQMCVYLQRLQCVRAPYRISKPDE 541
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
A+FA F +E TPDQK A D+ D+T R+TPMDR+I GDVGFGKTEVA RAI +
Sbjct: 542 EAKFAEGFRFELTPDQKMAIEDINEDMT-RDTPMDRIIVGDVGFGKTEVAFRAISRACFS 600
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR-FQSKAEKE--EHLDMIKHGHL 195
GK + +LAPT VLAKQH V+ RF ++ ++V LL+R ++K +KE E G
Sbjct: 601 GKNSFILAPTTVLAKQHAANVAARF-RHLGVEVNLLTRHVKTKDQKEILEKFSQKDSGRA 659
Query: 196 NIIVGTHSLLG-SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 254
IIVGTH LL S VY+NL LL++DEEQRFGV+ K++I++ K +VDVLTLSATPIPRTL
Sbjct: 660 QIIVGTHGLLNLSTEVYDNLDLLIIDEEQRFGVRHKDQISALKATVDVLTLSATPIPRTL 719
Query: 255 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 314
++A++GFRDASL+ TPPPER PI+T+L ++K+ AI+YE++RGGQ++Y++PRI +
Sbjct: 720 HMAISGFRDASLVQTPPPERRPIRTNLLPMDEDKIREAIEYEINRGGQIYYIVPRIMMMG 779
Query: 315 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 374
+ L P + + AHGQ L+ M++F+ G +L+CT IVESGLDI N NTI
Sbjct: 780 DSRQRLFGILPNLRVIEAHGQMDGDTLDAVMDEFSNGEADVLLCTTIVESGLDIPNCNTI 839
Query: 375 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP-DKSLLSDQALERLAALEECRELGQG 433
I+++VQ FGLA LYQLRGRVGRAD++AHA++FY D L+++A ERL ALEE LG+G
Sbjct: 840 IIEEVQSFGLASLYQLRGRVGRADRQAHAWMFYGLDPESLNEKAKERLLALEESCGLGEG 899
Query: 434 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD 478
F+LAE+DM IRG GT+FGE+Q+G+V +VG DL+ E+L+ L +V+
Sbjct: 900 FKLAERDMSIRGVGTLFGEKQSGEVDSVGADLYLELLYSQLQRVE 944
>gi|443479089|ref|ZP_21068745.1| transcription-repair coupling factor [Pseudanabaena biceps PCC 7429]
gi|443015494|gb|ELS30419.1| transcription-repair coupling factor [Pseudanabaena biceps PCC 7429]
Length = 1033
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 245/534 (45%), Positives = 341/534 (63%), Gaps = 16/534 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFA 83
+ +P L+ +++T AW+ K + I K+ DL++LY+ R +P + E
Sbjct: 505 SNKPPKLNSIANTKAWDNALGKCQKEIYKLARDLLQLYVRRANLVGYAFPPDTDWQQEME 564
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
FPY+ TPDQ KA DV++D+ E + PMDRL+CGDVGFGKTEVA+RAIF V AGKQ
Sbjct: 565 DSFPYQLTPDQVKAVQDVKQDM-ESDRPMDRLVCGDVGFGKTEVAVRAIFKAVCAGKQVA 623
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA+QHF + RF+ YP V +++RF+ E+++ L + G + +IVGTH
Sbjct: 624 LLAPTTILAQQHFHTLQTRFAAYP-FTVEIVNRFRPAKERKQVLQQVADGKVQVIVGTHQ 682
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LL V +++LGLLV+DEEQRFG QKEKI + K VD+LTLSATPIPRTLY AL+G R+
Sbjct: 683 LLSKDVEFHDLGLLVIDEEQRFGTLQKEKIKTMKGDVDLLTLSATPIPRTLYAALSGVRE 742
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPPP R I+THL A+ V +AI++ELDRGGQVFYV+PRI+G++ LQ
Sbjct: 743 MSVIATPPPSRRSIQTHLFAYDASLVKTAIRHELDRGGQVFYVVPRIEGIDAIAVSLQAM 802
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V +AIAHGQ +LE M F IL+CT I+ESGLDI NTI+++D + G
Sbjct: 803 LPNVRLAIAHGQMQESELESAMVAFNNNEADILLCTTIIESGLDIPRVNTIVIEDAHKLG 862
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
LAQLYQLRGRVGRA +AHAYL YP L+D A +RL A++E +LG G+QLA +DM I
Sbjct: 863 LAQLYQLRGRVGRAGIQAHAYLLYPPNLELTDAAKKRLDAIQEFSQLGSGYQLAMRDMEI 922
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL--- 500
RG G + GE+Q+G +G L+ ++L E ++++ + V +Q+ PRL
Sbjct: 923 RGLGDLLGEEQSGQADVIGFALYMDLLQEYINELRGKILPEVADTELQL-----PRLVAF 977
Query: 501 -PSEYINHLENPMEM-VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 552
P YI E + + A+ ++++I L E+L YG P ++LL+
Sbjct: 978 IPDTYIEDNETKINAYLTLAKVKSKEEILKLAAIWENL---YGALPEETQVLLR 1028
>gi|308803831|ref|XP_003079228.1| putative helicase (ISS) [Ostreococcus tauri]
gi|116057683|emb|CAL53886.1| putative helicase (ISS) [Ostreococcus tauri]
Length = 905
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 267/647 (41%), Positives = 391/647 (60%), Gaps = 50/647 (7%)
Query: 16 FCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK 75
FC P +P L+KL D+T W+ R+ K + I+++VV+ M +YL RL+ R PY
Sbjct: 289 FC---SPGALVKPPKLNKLKDSTTWDLREKKTEATIRRLVVNQMVIYLQRLQTIRNPYEL 345
Query: 76 NPA--IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133
PA + F FPY+ TPDQ +A D+ DL+ R+ PMDRL+ GDVGFGKTEVA+RAIF
Sbjct: 346 PPAESVEAFDKSFPYKLTPDQVRAVEDITIDLS-RDAPMDRLVIGDVGFGKTEVAMRAIF 404
Query: 134 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 193
V S+G ++APT VLAKQH ++ RF I V L++R K+ E + K G
Sbjct: 405 HVASSGGGVFMMAPTTVLAKQHAANLAARFRPL-GINVELVTRHVVKSRHTEIFEKFKEG 463
Query: 194 HLNIIVGTHSLLG-SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 252
+ IIVGTH L+ Y L LLV+DEEQRFGVK K++I++ K VDVLTLSATPIPR
Sbjct: 464 TVQIIVGTHKLVNLDSEYYRKLKLLVIDEEQRFGVKHKDQISALKAEVDVLTLSATPIPR 523
Query: 253 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 312
TL++A++GFRDASL+ TPPPER PI T L+ + + AI++EL+R GQV+Y++PR+
Sbjct: 524 TLHMAMSGFRDASLVQTPPPERRPINTILAPQNDADITRAIEHELNRNGQVYYIVPRVSM 583
Query: 313 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 372
++E + L + FP + I HGQ Q+++ ME F+ G +LI T IVESGLDI N N
Sbjct: 584 MKEASERLNRLFPELRIMTCHGQMDGDQIDDAMEAFSSGTADVLIATTIVESGLDIPNCN 643
Query: 373 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELG 431
TII+++ LRGRVGRA ++A+AY+FY D+S L+ A ERLAALEEC LG
Sbjct: 644 TIIIEN-----------LRGRVGRAGRQAYAYMFYSSDESELTPAAQERLAALEECCGLG 692
Query: 432 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 491
+GF+L+E+DMGIRG GT+FGE+Q+GDV NVG DL+ E+L++ L ++D + ++ V+
Sbjct: 693 EGFRLSERDMGIRGVGTMFGEKQSGDVDNVGADLYLELLYKQLQRIDNLRIKTIAASDVR 752
Query: 492 I-----DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWC---LMQFTESLRRQYGKE 543
+ + I P YI + N+ KAA I + + L+ +G E
Sbjct: 753 VETAGYEFGITPF----YIATTQ-----ANDEVKAAIDSITVHEHIHAMLKLLQDTFG-E 802
Query: 544 PYSMEILLKKLYVRRM---AADIGITKIY----ASGKMVGMKTNMNKKVFKMMIDSMTSE 596
P E L L+ R M A D+GI I ++ + T+ + V +++++ T+
Sbjct: 803 PD--EFSLSCLFAREMQILAGDLGIKAILLDYPKDPPIIDLITDASLMVKELLVEG-TNG 859
Query: 597 VHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 643
+ + G I+ + + ++ + ++ L ++ +S+P+ +KY
Sbjct: 860 AYDVKIMDNG--IRFKTMTDMTMHGKVMYVVSILRQITSSIPSFVKY 904
>gi|257457388|ref|ZP_05622559.1| transcription-repair coupling factor [Treponema vincentii ATCC 35580]
gi|257445310|gb|EEV20382.1| transcription-repair coupling factor [Treponema vincentii ATCC 35580]
Length = 1154
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/574 (42%), Positives = 356/574 (62%), Gaps = 16/574 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAE 81
NE + PR + + AWE RK K K +++ + L++LY R + N
Sbjct: 549 NEGEAPRL--DIIGSKAWENRKNKVKKSVEDIADKLIDLYSRRKAAAGFAFAKDNEWQTA 606
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPYE T DQ DV+ D+ E+ PMDRLICGDVG+GKTE+A+RA F V GKQ
Sbjct: 607 FEAAFPYEETEDQLTCIADVKTDM-EKPVPMDRLICGDVGYGKTEIAMRAAFKAVMNGKQ 665
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
A LAPT +LA+QHF+ ERF K+P +K+ LSRF SKAE+++ LD +K+G L+I++GT
Sbjct: 666 AAFLAPTTILAEQHFETFQERFQKFP-VKLARLSRFVSKAEQKKVLDQLKNGELDIVIGT 724
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H ++ V + +LGL++VDEEQRFGVK KE++ K ++D L+LSATPIPRTL+++L
Sbjct: 725 HRVIQKDVQFKDLGLMIVDEEQRFGVKDKERLKQMKTNIDCLSLSATPIPRTLHISLLKI 784
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD SL++TPP R P++T +S F EK+ AI++E+DRGGQVFY+ R++ LEE +Q
Sbjct: 785 RDMSLLTTPPQNRRPVETVISPFDPEKIAQAIRFEVDRGGQVFYLHNRVESLEETRYKIQ 844
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
Q P V I IAHGQ + +LE+ +F G +LI T I+E+G+DI NANTII+
Sbjct: 845 QLIPEVLIDIAHGQMSATELEDIFRRFNMGGFHVLIATTIIENGIDIPNANTIIIDRADM 904
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
+G++QLYQLRGRVGR+D++A+AYL YP+ LS+ A++RL + + ELG GF++A KDM
Sbjct: 905 YGVSQLYQLRGRVGRSDRKAYAYLLYPENKALSEVAMKRLQVISDFTELGSGFKIAMKDM 964
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G++Q+GD+ +VG DL+ +L E++ ++ P I++ +P
Sbjct: 965 EIRGAGNLLGKEQSGDIYSVGFDLYLRLLEEAVERLQNAGY--EPETEPVIELEYTGFIP 1022
Query: 502 SEYINHLENPMEMVNE--AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 559
YI E ME+ + A + AE+ L + L ++G P E LL ++ +
Sbjct: 1023 DSYIRVPETKMEIYKKIAAVRTAEE----LDRLYAELSDRFGPVPEEAESLLSLAEIKII 1078
Query: 560 AADIGITKIYASGKMVGMKTNMNKKVFKMMIDSM 593
A + I + V + KV K+ ID +
Sbjct: 1079 CAKLAIASLKERNGTVRITF---AKVSKISIDKL 1109
>gi|303273712|ref|XP_003056209.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462293|gb|EEH59585.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 426
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 228/424 (53%), Positives = 298/424 (70%), Gaps = 4/424 (0%)
Query: 59 MELYLHRLKQKRPPY--PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLI 116
M LYL RL R PY P F F Y TPDQ A D DL++R+TPMDR++
Sbjct: 1 MSLYLKRLHCIRAPYTPPCEDIYKRFNDSFSYTLTPDQATAIRDCYDDLSKRDTPMDRIV 60
Query: 117 CGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR 176
GDVGFGKTEVA+RAIF V+S+G Q VLAPT VLAKQH +S R + D+ V LL+R
Sbjct: 61 VGDVGFGKTEVAMRAIFRVLSSGGQVFVLAPTTVLAKQHAATISARLEIF-DMSVELLNR 119
Query: 177 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-SRVVYNNLGLLVVDEEQRFGVKQKEKIAS 235
++ + L G +++VGTH +L Y L LLV+DEEQRFGVK K++I++
Sbjct: 120 NVKESSRLAVLQRWMMGKTDVVVGTHLMLNLPPENYKRLNLLVIDEEQRFGVKHKDQISA 179
Query: 236 FKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKY 295
K +VDVLTLSATPIPRTL++A+TGFRDASL++TPPPER PI T L ++++ V AI++
Sbjct: 180 LKATVDVLTLSATPIPRTLHMAITGFRDASLVTTPPPERRPINTQLQVYNEKTVCDAIQF 239
Query: 296 ELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKI 355
ELDRGGQ+FYV+P+I+ ++ + LQ FP + I AHG+ QL+ M+ FA G +
Sbjct: 240 ELDRGGQIFYVVPKIQMIDGALQRLQGLFPCLRIMKAHGKMKGDQLDIAMDYFACGKADV 299
Query: 356 LICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSD 415
L+CT IVESGLDI N NTII+++VQQFGLA LYQLRGRVGRA ++A+AY+F+ D L
Sbjct: 300 LLCTTIVESGLDIPNVNTIIIEEVQQFGLASLYQLRGRVGRACRQAYAYMFHADIGDLRS 359
Query: 416 QALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS 475
+A ERL ALEEC LG+GF+LAE+DM IRG GTIFGE+Q+G V N+G DL+ E L+ L
Sbjct: 360 EAQERLLALEECCGLGEGFKLAERDMAIRGVGTIFGEKQSGQVDNIGADLYMEFLYNQLE 419
Query: 476 KVDE 479
++++
Sbjct: 420 QIEK 423
>gi|417643169|ref|ZP_12293230.1| transcription-repair coupling factor [Staphylococcus warneri VCU121]
gi|330686080|gb|EGG97702.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU121]
Length = 1169
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 237/562 (42%), Positives = 362/562 (64%), Gaps = 17/562 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E K PR L+KL T W++ K K + +++ + +L++LY R + Y P
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKQR--EMSVGYQFGPDT 606
Query: 80 AE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136
E F FPYE TPDQ K+ +++ D+ ERE PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 607 EEQSTFELDFPYELTPDQSKSIDEIKGDM-ERERPMDRLLCGDVGYGKTEVAVRAAFKAV 665
Query: 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 196
GKQ L PT +LA+QH++ + ER +P +++ L+SRF+S E +E + +K G+++
Sbjct: 666 MEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLISRFRSTKEVKETKEGLKSGYVD 724
Query: 197 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 256
I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++
Sbjct: 725 IVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTLKNNVDVLTLTATPIPRTLHM 784
Query: 257 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 316
++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E
Sbjct: 785 SMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEK 844
Query: 317 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 376
+ LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+
Sbjct: 845 REQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLII 904
Query: 377 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 436
++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++
Sbjct: 905 EEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKI 964
Query: 437 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VDEHCVISVPYKSVQID 493
A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ + E VP V+++
Sbjct: 965 AMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEEAP-DVP--DVEVE 1021
Query: 494 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553
+N++ LP+EYI + + +E+ + K +D LM + L ++ P +E LL
Sbjct: 1022 LNLDAYLPAEYIQNEQAKIEIYKKLRKVETED--QLMDIKDELIDRFNDYPTEVERLLDI 1079
Query: 554 LYVRRMAADIGITKIYASGKMV 575
+ ++ A GITKI GK +
Sbjct: 1080 VEIKTHALHAGITKIKDMGKQI 1101
>gi|445060520|ref|YP_007385924.1| transcription-repair coupling factor [Staphylococcus warneri SG1]
gi|443426577|gb|AGC91480.1| transcription-repair coupling factor [Staphylococcus warneri SG1]
Length = 1169
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 237/562 (42%), Positives = 362/562 (64%), Gaps = 17/562 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E K PR L+KL T W++ K K + +++ + +L++LY R + Y P
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKQR--EMSVGYQFGPDT 606
Query: 80 AE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136
E F FPYE TPDQ K+ +++ D+ ERE PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 607 EEQSTFELDFPYELTPDQSKSIDEIKGDM-ERERPMDRLLCGDVGYGKTEVAVRAAFKAV 665
Query: 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 196
GKQ L PT +LA+QH++ + ER +P +++ L+SRF+S E +E + +K G+++
Sbjct: 666 MEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLISRFRSTKEVKETKEGLKSGYVD 724
Query: 197 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 256
I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++
Sbjct: 725 IVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTLKNNVDVLTLTATPIPRTLHM 784
Query: 257 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 316
++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E
Sbjct: 785 SMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEK 844
Query: 317 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 376
+ LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+
Sbjct: 845 REQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLII 904
Query: 377 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 436
++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++
Sbjct: 905 EEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKI 964
Query: 437 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VDEHCVISVPYKSVQID 493
A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ + E VP V+++
Sbjct: 965 AMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEEAP-DVP--DVEVE 1021
Query: 494 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553
+N++ LP+EYI + + +E+ + K +D LM + L ++ P +E LL
Sbjct: 1022 LNLDAYLPAEYIQNEQAKIEIYKKLRKVETED--QLMDIKDELIDRFNDYPTEVERLLDI 1079
Query: 554 LYVRRMAADIGITKIYASGKMV 575
+ ++ A GITKI GK +
Sbjct: 1080 VEIKTHALHAGITKIKDMGKQI 1101
>gi|374307673|ref|YP_005054104.1| transcription-repair coupling factor [Filifactor alocis ATCC 35896]
gi|291166313|gb|EFE28359.1| transcription-repair coupling factor [Filifactor alocis ATCC 35896]
Length = 1124
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/573 (41%), Positives = 357/573 (62%), Gaps = 16/573 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F N ++ LSKL ++ W++ K + K A++ + DL+ELY R +K + ++
Sbjct: 540 FIGNSAEQAYKLSKLG-SSDWKKSKARTKKAVEAIAQDLVELYAVRENEKGYSFQEDTVW 598
Query: 80 A-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPYE T DQ KA +V+RD+ E MDRL+CGDVG+GKTEVA+RAIF
Sbjct: 599 QREFEDAFPYEETDDQLKAIEEVKRDM-ESSRVMDRLLCGDVGYGKTEVAIRAIFKACMD 657
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ + L PT +LA+QH+ + ERF YP ++V L+SRF++ E E D + G ++++
Sbjct: 658 GKQVVFLVPTTILAQQHYVTIKERFLNYP-LRVDLVSRFKTTKEVNETFDSLAKGSVDVV 716
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +L ++ Y NLGL+VVDEEQRFGVKQKE I ++++D LTLSATPIPRTL+L+L
Sbjct: 717 IGTHKILSEKIKYKNLGLIVVDEEQRFGVKQKEAIKKMRMNIDCLTLSATPIPRTLHLSL 776
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ S+++ PP +R PI T+++ + AI EL RGGQVF+V R++ +++
Sbjct: 777 SGIREMSILNEPPQDRHPIVTYVTEAKSNIIADAIDRELARGGQVFFVYNRVETIDKIHT 836
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L++ P DIA+AHGQ SR+LE+ M F +L+CT I+E+G+DI NANT+IV D
Sbjct: 837 LLKELVPDADIAVAHGQMPSRKLEQIMVDFLNREYDVLVCTTIIETGMDISNANTMIVYD 896
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+ GL+QLYQLRGRVGR+ K+ +AY Y + +L++ A +RL + E E G GF++A
Sbjct: 897 ADKMGLSQLYQLRGRVGRSSKQGYAYFMYEKEKVLTEIAEKRLKTIREFTEFGSGFKVAM 956
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
KD+ IRG G + GE Q+G + N+G DL+ ML E++ K + V +I + +N
Sbjct: 957 KDLEIRGAGNLLGESQSGHIANIGYDLYVRMLDEAIKKYKGE--LPVTDVETEIQLKLNG 1014
Query: 499 RLPSEYINHLENPMEMVNEAEKAA----EQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+P+ Y+ E+ +E ++ +K A ++D LM + L ++G+ P S+ LL
Sbjct: 1015 YIPNYYV---EDEIEKIDIYKKIAMIDKKEDYEDLM---DELCDRFGEIPISVVTLLDVS 1068
Query: 555 YVRRMAADIGITKIYASGKMVGMKTNMNKKVFK 587
Y+R + +TKIY MV NK + K
Sbjct: 1069 YLRALGKKGKVTKIYQKNFMVYFVGKDNKLITK 1101
>gi|167036600|ref|YP_001664178.1| transcription-repair coupling factor [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115027|ref|YP_004185186.1| transcription-repair coupling factor [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166855434|gb|ABY93842.1| transcription-repair coupling factor [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928118|gb|ADV78803.1| transcription-repair coupling factor [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 1165
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 237/563 (42%), Positives = 355/563 (63%), Gaps = 15/563 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFA 83
T P L+KL + W R K K K A++ + DL++LY R K + P P EF
Sbjct: 560 TDNPPKLNKLG-GSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMVKGHAFSPDTPWQKEFE 618
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
QFPYE T DQ + +++ D+ E++ PMDRL+CGDVG+GKTEVALRA F V+ GKQ
Sbjct: 619 EQFPYEETEDQLRCIKEIKEDM-EKDRPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVA 677
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
L PT +LA QH+ ERF ++P +K+ +LSRF++ E+ + + + G+++IIVGTH
Sbjct: 678 FLCPTTILAYQHYANFIERFKEFP-VKIEMLSRFRTPKEQSKIIKELAEGNIDIIVGTHR 736
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LL + + + +LGLL++DEEQRFGV KEKI K ++DVLTLSATPIPRTL+++L G RD
Sbjct: 737 LLQNDIKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLIGIRD 796
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S++ PP +R P++T++ F++E + AI E+ RGGQV++V R+ G+E+ F++
Sbjct: 797 MSVLENPPEDRFPVETYVVEFNEELIKDAILREIARGGQVYFVYNRVNGIEKMASFVKDL 856
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
PG +A+AHGQ QLE+ M F G +L+ T I+E+GLDI N NTIIV D + G
Sbjct: 857 VPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLG 916
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E E G GF++A +D+ I
Sbjct: 917 LSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMRDLEI 976
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININPRLP 501
RG G + G +Q G + +G DL+ ++L E++ + P + + IDI +N +
Sbjct: 977 RGAGNLLGAEQHGHIDAIGYDLYLKLLEEAIRNLKGEA----PKEEITTTIDIKVNAYID 1032
Query: 502 SEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
S YI +EM + A + +D +++ +E L ++G P +E LL+ Y++ +A
Sbjct: 1033 SSYIEDENLRLEMYKKIASIKSRED---MIEISEELVDRFGDYPKPVEALLEIAYLKAIA 1089
Query: 561 ADIGITKIYASGKMVGMKTN-MN 582
+ + IT+I G V +K N MN
Sbjct: 1090 SQVNITEITEKGNSVILKFNDMN 1112
>gi|156741461|ref|YP_001431590.1| transcription-repair coupling factor [Roseiflexus castenholzii DSM
13941]
gi|156232789|gb|ABU57572.1| transcription-repair coupling factor [Roseiflexus castenholzii DSM
13941]
Length = 1246
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 247/604 (40%), Positives = 355/604 (58%), Gaps = 54/604 (8%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYE 89
L++L T WER K K + A+Q + +L+ LY R L + P E A FPY
Sbjct: 604 LTRLG-TQDWERAKRKARAAVQDLADELIGLYAQRQLAEGHAFSPDTEWQRELEASFPYV 662
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ KA +DV+RD+ E+ PMDRLICGDVGFGKTEVALRA F V GKQ VLAPT
Sbjct: 663 ETPDQLKAIIDVKRDM-EQPQPMDRLICGDVGFGKTEVALRAAFKAVQDGKQVAVLAPTT 721
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
VL +QH+D S R + +P ++V ++SRF+S E+ + + + G +++I+GTH LL V
Sbjct: 722 VLVQQHYDTFSRRMAAFP-VRVEMISRFRSAKEQSDIVRRLARGEIDVIIGTHRLLSKDV 780
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
V+ +LGLLVVDEEQRFGV+ KE+I + +VDV+TL+ATPIPRTL++AL G RD S+I T
Sbjct: 781 VFKDLGLLVVDEEQRFGVRHKERIKQLRTNVDVITLTATPIPRTLHMALAGIRDLSVIDT 840
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP +R+PIKT++ + + + AI ELDRGGQV++V R++ + D L+Q P I
Sbjct: 841 PPEDRIPIKTYVLPYDENLIREAILRELDRGGQVYFVHNRVQSIYYVADRLRQLVPEARI 900
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
A+ HGQ RQLE M F G +L+CT I+ESGLD+ NANTII+ D FGLAQLYQ
Sbjct: 901 AVGHGQLDERQLERVMLDFFTGRDDVLVCTTIIESGLDVPNANTIIIDDATHFGLAQLYQ 960
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR + A+AYLFY + + +A ERL A++E ELG GF++A +D+ IRG G +
Sbjct: 961 LRGRVGRGTQRAYAYLFYRSERPSTPEAQERLQAIQEATELGAGFRIAMRDLEIRGAGNL 1020
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLS---------------------------------- 475
G +Q+G + VG DL+ +L +++
Sbjct: 1021 LGAEQSGHIAAVGFDLYSRLLEQAVRTLKQRLIATNLITGADVLRATPTTETTAPTPLRP 1080
Query: 476 ---------KVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDI 526
+VDE +IS V +D+ ++ LP +YI ++ + + A Q
Sbjct: 1081 SPAPRQPPVRVDEKVLIS---PLVTLDLPLDAYLPVDYIP--DDQVRLAAYQRMAEAQTP 1135
Query: 527 WCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK--MVGMKTNMNKK 584
+ + LR ++G+ P E LL L ++ +A G+T + + + +V + N++
Sbjct: 1136 EAVHDLRQELRDRFGELPEPAEQLLIWLRIKALALAAGVTSVVTTDEEFIVRLPEGANRQ 1195
Query: 585 VFKM 588
++
Sbjct: 1196 RTRL 1199
>gi|239637489|ref|ZP_04678463.1| transcription-repair coupling factor [Staphylococcus warneri L37603]
gi|239596934|gb|EEQ79457.1| transcription-repair coupling factor [Staphylococcus warneri L37603]
Length = 1169
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/562 (41%), Positives = 362/562 (64%), Gaps = 17/562 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E K PR L+KL T W++ K K + +++ + +L++LY R + Y P
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKQR--EMSVGYQFGPDT 606
Query: 80 AE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136
E F FPYE TPDQ K+ +++ D+ ERE PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 607 EEQSTFELDFPYELTPDQSKSIEEIKGDM-ERERPMDRLLCGDVGYGKTEVAVRAAFKAV 665
Query: 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 196
GKQ L PT +LA+QH++ + ER +P +++ L+SRF+S E +E + +K G+++
Sbjct: 666 MEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLISRFRSTKEVKETKEGLKSGYVD 724
Query: 197 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 256
I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++
Sbjct: 725 IVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTLKNNVDVLTLTATPIPRTLHM 784
Query: 257 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 316
++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E
Sbjct: 785 SMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEK 844
Query: 317 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 376
+ LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+
Sbjct: 845 REQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLII 904
Query: 377 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 436
++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++
Sbjct: 905 EEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKI 964
Query: 437 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VDEHCVISVPYKSVQID 493
A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ + E VP V+++
Sbjct: 965 AMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEETP-DVP--DVEVE 1021
Query: 494 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553
+N++ LP+EYI + + +E+ + K ++ LM + L ++ P +E LL
Sbjct: 1022 LNLDAYLPAEYIQNEQAKIEIYKKLRKVESEE--QLMDIKDELIDRFNDYPTEVERLLDI 1079
Query: 554 LYVRRMAADIGITKIYASGKMV 575
+ ++ A GITKI GK +
Sbjct: 1080 VEIKTHALHAGITKIKDMGKQI 1101
>gi|222152152|ref|YP_002561312.1| transcription-repair coupling factor [Macrococcus caseolyticus
JCSC5402]
gi|222121281|dbj|BAH18616.1| transcription-repair coupling factor [Macrococcus caseolyticus
JCSC5402]
Length = 1166
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/569 (41%), Positives = 365/569 (64%), Gaps = 22/569 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E K P+ L+KL T W++ K + + ++ + +L++LY R ++ Y P
Sbjct: 550 FVGSEDKDPK-LNKLG-GTEWKKTKARVQKNVEDIAEELLKLYQER--ERIEGYQFGPDT 605
Query: 80 AE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136
E F FPYEPT DQK++ ++++ D+ E+ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 606 EEQENFEMDFPYEPTHDQKQSLIEIKGDM-EKSKPMDRLLCGDVGYGKTEVAIRAAFKAV 664
Query: 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 196
GKQ L PT +LA+QH++ + ER YP ++V ++SRF++ E E +K G ++
Sbjct: 665 MDGKQVAFLVPTTILAQQHYETIIERMQDYP-VEVQMMSRFRTTKEVNETKKGLKSGFVD 723
Query: 197 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 256
I+VGTH LLG +VY +LGLL+VDEEQRFGV KEKI + K +VDVLTL+ATPIPRTL++
Sbjct: 724 IVVGTHKLLGKDIVYKDLGLLIVDEEQRFGVTHKEKIKALKTNVDVLTLTATPIPRTLHM 783
Query: 257 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 316
+L G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ R+ + +
Sbjct: 784 SLLGVRDLSVIETPPENRFPVQTYVLEYQHNFIKEAMERELSRNGQVFYLYNRVATIYQK 843
Query: 317 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 376
+ L+ P IA+AHGQ R+LEETM F G IL+ T I+E+G+D+ NANT+I+
Sbjct: 844 AEQLEMMMPDARIAVAHGQMSERELEETMLGFINGEYDILVTTTIIETGVDVPNANTLII 903
Query: 377 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 436
+D +FGL+QLYQLRGRVGR+++ ++AY + +L++ A +RL A++E ELG GF++
Sbjct: 904 EDADRFGLSQLYQLRGRVGRSNRISYAYFLHAPNKVLTEVAEQRLQAIKEFTELGSGFKI 963
Query: 437 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVI----SVPYKSVQI 492
A +D+ IRG G + G+QQ G + +VG DL+ EML ++ V+E I +VP ++I
Sbjct: 964 AMRDLNIRGAGNLLGKQQHGFIDSVGYDLYSEMLQQA---VNEKRGIKEEETVP--QLEI 1018
Query: 493 DININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
D+ I+ +P+EYI + +E + EQ+ L+ + + +YG+ P +++ L+
Sbjct: 1019 DVEIDAYIPAEYIREEQAKIEFYKKLRSVTTEQE---LIDVQDEMTDRYGEYPEAVDHLM 1075
Query: 552 KKLYVRRMAADIGITKIYASGKMVGMKTN 580
K + ++ A GI ++ +GK + ++ +
Sbjct: 1076 KIVEIKVNALSFGIVQVRDTGKSIELEAS 1104
>gi|339500234|ref|YP_004698269.1| transcription-repair coupling factor [Spirochaeta caldaria DSM 7334]
gi|338834583|gb|AEJ19761.1| transcription-repair coupling factor [Spirochaeta caldaria DSM 7334]
Length = 1133
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 235/574 (40%), Positives = 366/574 (63%), Gaps = 16/574 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
NE PR L KL + +WE RK + K +++ + L++LY R + +PK+
Sbjct: 527 NEGNAPR-LDKLG-SKSWENRKNRVKKSVEDIAQRLIDLYSKRKAVQGYAFPKDTEWQTA 584
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPYE T DQ + +++RD+ E PMDRL+CGDVG+GKTEVA+RA F V GKQ
Sbjct: 585 FEAAFPYEETEDQLRCVEEIKRDM-ESPFPMDRLVCGDVGYGKTEVAVRACFKAVMGGKQ 643
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
LAPT +LA+QH++ ERF+++P +++G+LSRF +AE + L+ +K G ++I+VGT
Sbjct: 644 VAFLAPTTILAEQHYENFQERFAQFP-VRLGMLSRFVDRAEARKTLEAVKKGEIDILVGT 702
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H ++ VV+ +LGLLV+DEEQRFGVK KE++ K ++D LTLSATPIPRTL+++L
Sbjct: 703 HRIIQKDVVFKDLGLLVIDEEQRFGVKDKERLKELKTNIDCLTLSATPIPRTLHMSLLKI 762
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD SL++TPP R P++T + F+++++ +AI+ E++RGGQVFY+ R++ L+E L+
Sbjct: 763 RDMSLLTTPPYNRHPVETTIDEFNEDRIAAAIRREVERGGQVFYLHNRVESLDEVRRMLE 822
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P + I IAHGQ +LE+ M +F G +L+ T I+E+G+DI N NTII+
Sbjct: 823 RIVPEMLIDIAHGQMDPHELEDVMHRFIHGGFHVLVSTTIIENGIDIPNVNTIIIDRADM 882
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
+G++QLYQLRGRVGR+D+ A+AYLFYP LS+ A++RL + + ELG GF++A KDM
Sbjct: 883 YGVSQLYQLRGRVGRSDRVAYAYLFYPKDKALSELAMKRLQVISDFTELGSGFKIAMKDM 942
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDE--HCVISVPYKSVQIDININPR 499
IRG G + G +Q+GD+ +VG D++ +L E++ ++ + + V + Y +++ +
Sbjct: 943 EIRGAGNLLGREQSGDIYSVGFDMYLRLLDEAVQRLQDANYEVENETY----LELEYSGF 998
Query: 500 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 559
+P YI+ + ME+ + AA Q L Q L ++G P ++ LL +R +
Sbjct: 999 IPDSYIDSAQEKMEVYKKI--AAIQSRDELEQVYAELLDRFGPLPDVVQSLLSLAEIRII 1056
Query: 560 AADIGITKIYASGKMVGMKTNMNKKVFKMMIDSM 593
D+ I + G MV ++ KV ++ +D +
Sbjct: 1057 CKDLSIASLKERGGMVRIEF---AKVSRVKVDRL 1087
>gi|224475645|ref|YP_002633251.1| putative transcription-repair coupling factor [Staphylococcus
carnosus subsp. carnosus TM300]
gi|222420252|emb|CAL27066.1| putative transcription-repair coupling factor [Staphylococcus
carnosus subsp. carnosus TM300]
Length = 1172
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/560 (41%), Positives = 362/560 (64%), Gaps = 14/560 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E K PR L+KL T W++ K K + +++ + +L+ELY R + Y +
Sbjct: 552 YVASEDKTPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIELYREREMAQGYQYGADSEQ 609
Query: 80 A-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY+ T DQ K+ ++++ D+ E+E PMDRL+CGDVG+GKTEVALRA F V
Sbjct: 610 QHEFEMDFPYDLTADQSKSIVEIKDDM-EKERPMDRLLCGDVGYGKTEVALRAAFKAVME 668
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P + + L+SRF++ E +E ++ G ++I+
Sbjct: 669 GKQVAFLVPTTILAQQHYETLIERMQDFP-VNIELMSRFRTPKEVKETKKGLEDGTVDIV 727
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL V Y +LGLLVVDEEQRFGV+ KE+I S K +VDVLTL+ATPIPRTL++++
Sbjct: 728 VGTHKLLAKDVKYKDLGLLVVDEEQRFGVRHKERIKSLKTNVDVLTLTATPIPRTLHMSM 787
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL RGGQ FY+ +++ + E +
Sbjct: 788 LGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRGGQAFYLYNKVQSIYEKKE 847
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +I +AHG+ R+LE+TM F G IL+ T I+E+G+D+ NANT+I++D
Sbjct: 848 QLQMLMPEANIGVAHGRMTERELEDTMIGFVDGEYDILVTTTIIETGVDVPNANTLIIED 907
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +LS+ A ERL A++E ELG GF++A
Sbjct: 908 ADRFGLSQLYQLRGRVGRSSRVGYAYFLHPTNKVLSETAEERLQAIKEFTELGSGFKIAM 967
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VDEHCVISVPYKSVQIDIN 495
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ + E + P ++ID+N
Sbjct: 968 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEET--TTP--EIEIDLN 1023
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
++ LP+EYI + ++ +E+ + + ++ LM + L ++ + P +E LL +
Sbjct: 1024 MDVYLPTEYIPNEQSKIEIYKKLRQIENEE--QLMDIKDELIDRFNEYPIQVERLLDIVE 1081
Query: 556 VRRMAADIGITKIYASGKMV 575
+R A ++G+ I +GK V
Sbjct: 1082 MRIHALNVGVLHIKDTGKAV 1101
>gi|302876604|ref|YP_003845237.1| transcription-repair coupling factor [Clostridium cellulovorans 743B]
gi|307687278|ref|ZP_07629724.1| transcription-repair coupling factor [Clostridium cellulovorans 743B]
gi|302579461|gb|ADL53473.1| transcription-repair coupling factor [Clostridium cellulovorans 743B]
Length = 1173
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 237/606 (39%), Positives = 388/606 (64%), Gaps = 14/606 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE- 81
+E K P+ ++KL + W++ KTK + +I ++ DL++LY R K + K+ +
Sbjct: 563 SEGKAPK-ITKLGGS-EWQKAKTKARNSINEIAQDLVKLYATREAVKGYSFSKDTTWQQQ 620
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A+FPYE TPDQ A +++ D+ E+ PMDRL+CGDVG+GKTEVA+RA F V GKQ
Sbjct: 621 FEAEFPYEETPDQISAIEEIKVDM-EKNKPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQ 679
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
A L PT +LA+QH+ + +RF+ +P + + ++SRF+S +++E L +K G+++II+GT
Sbjct: 680 AAFLVPTTILAEQHYKTLKKRFTGFP-VNIDMISRFRSATQQKETLKSLKEGNVDIIIGT 738
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +LG V + +LGLL+VDEEQRFGV KEKI + K ++DVLTLSATPIPRTL ++LTG
Sbjct: 739 HKILGKTVQFKDLGLLIVDEEQRFGVSHKEKIKNAKKNIDVLTLSATPIPRTLNMSLTGV 798
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
R S+I TPP ER P++T++ ++ + + A+ E++R GQVF+V R++ + E D L
Sbjct: 799 RSISVIETPPEERYPVQTYVVEYNDQLIRDAVLREINRKGQVFFVFNRVENIREIADSLA 858
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P I +AHGQ ++LEE M F IL+ T I+E+G+DIQNANT+I+ D +
Sbjct: 859 HLIPEARIIVAHGQMAEKELEEVMRAFMNQEYDILVSTTIIETGIDIQNANTMIIYDADK 918
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR ++ A+AYL Y ++++ A +RL A+++ ELG GF++A +D+
Sbjct: 919 MGLSQLYQLRGRVGRTNRIAYAYLTYRKDKIITEVAKKRLKAIKDFTELGSGFKVALRDL 978
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G Q G + +G DL+ +ML +++ KV + + P ++V I++ +N +P
Sbjct: 979 EIRGAGNVMGSAQHGQMAAIGYDLYCKMLEDTI-KVIKGEIDKEPIETV-IEMKVNAFIP 1036
Query: 502 SEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
+ YI+ +E+ + A ++D L+ T+ L ++ P S+ L++ Y+R +A
Sbjct: 1037 NGYISDETQKIEVYKKIASIETKKD---LLDITDELIDRFSDLPPSVNNLMEISYIRALA 1093
Query: 561 ADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL--LLELP 618
++GI ++ K + + K+ K M++++ + ++ + F+ ++ + L ++
Sbjct: 1094 KNLGIIEVKDKIKEIHLIFENKDKITKEMVNAIIDKYSKH-IMFKQEETPTMIFQLKDIK 1152
Query: 619 REQLLN 624
RE++LN
Sbjct: 1153 REEILN 1158
>gi|345018827|ref|YP_004821180.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344034170|gb|AEM79896.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 1169
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/558 (41%), Positives = 351/558 (62%), Gaps = 14/558 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFA 83
T P L+KL + W R K K K A++ + DL++LY R K + P P EF
Sbjct: 560 TDNPPKLNKLG-GSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMVKGHAFSPDTPWQKEFE 618
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
QFPYE T DQ + +++ D+ E++ PMDRL+CGDVG+GKTEVALRA F V+ GKQ
Sbjct: 619 EQFPYEETEDQLRCIKEIKEDM-EKDRPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVA 677
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
L PT +LA QH+ ERF ++P +K+ +LSRF++ E+ + + + G ++IIVGTH
Sbjct: 678 FLCPTTILAYQHYTNFIERFKEFP-VKIEMLSRFRTPKEQAQIIKGLAEGTIDIIVGTHR 736
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LL + V + +LGLL++DEEQRFGV KEKI K ++DVLTLSATPIPRTL+++L G RD
Sbjct: 737 LLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLIGIRD 796
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S++ PP +R P++T++ F++E + AI E+ RGGQV++V R+ G+E+ ++
Sbjct: 797 MSVLENPPEDRFPVETYVMEFNEELIKDAILREIGRGGQVYFVYNRVNGIEKMASLVKDL 856
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
PG +A+AHGQ QLE+ M F G +L+ T I+E+GLDI N NTIIV D + G
Sbjct: 857 VPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLG 916
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E E G GF++A +D+ I
Sbjct: 917 LSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMRDLEI 976
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININPRLP 501
RG G + G +Q G + +G DL+ ++L E++ + P + + IDI +N +
Sbjct: 977 RGAGNLLGAEQHGHINAIGYDLYLKLLEEAIRNLKGEA----PKEEITTTIDIKVNAYID 1032
Query: 502 SEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
S YI +EM + A + +D +++ +E L ++G P +E LL+ Y++ +A
Sbjct: 1033 SSYIEDENLRLEMYKKIASIESRED---MIEISEELVDRFGDYPKPVEALLEIAYLKAIA 1089
Query: 561 ADIGITKIYASGKMVGMK 578
+ + IT+I G +V +K
Sbjct: 1090 SQLYITEITEKGNVVILK 1107
>gi|326390842|ref|ZP_08212394.1| transcription-repair coupling factor [Thermoanaerobacter ethanolicus
JW 200]
gi|325993101|gb|EGD51541.1| transcription-repair coupling factor [Thermoanaerobacter ethanolicus
JW 200]
Length = 1169
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/558 (41%), Positives = 351/558 (62%), Gaps = 14/558 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFA 83
T P L+KL + W R K K K A++ + DL++LY R K + P P EF
Sbjct: 560 TDNPPKLNKLG-GSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMVKGHAFSPDTPWQKEFE 618
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
QFPYE T DQ + +++ D+ E++ PMDRL+CGDVG+GKTEVALRA F V+ GKQ
Sbjct: 619 EQFPYEETEDQLRCIKEIKEDM-EKDRPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVA 677
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
L PT +LA QH+ ERF ++P +K+ +LSRF++ E+ + + + G ++IIVGTH
Sbjct: 678 FLCPTTILAYQHYTNFIERFKEFP-VKIEMLSRFRTPKEQAQIIKGLAEGTIDIIVGTHR 736
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LL + V + +LGLL++DEEQRFGV KEKI K ++DVLTLSATPIPRTL+++L G RD
Sbjct: 737 LLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLIGIRD 796
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S++ PP +R P++T++ F++E + AI E+ RGGQV++V R+ G+E+ ++
Sbjct: 797 MSVLENPPEDRFPVETYVMEFNEELIKDAILREIGRGGQVYFVYNRVNGIEKMASLVKDL 856
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
PG +A+AHGQ QLE+ M F G +L+ T I+E+GLDI N NTIIV D + G
Sbjct: 857 VPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLG 916
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E E G GF++A +D+ I
Sbjct: 917 LSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMRDLEI 976
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININPRLP 501
RG G + G +Q G + +G DL+ ++L E++ + P + + IDI +N +
Sbjct: 977 RGAGNLLGAEQHGHINAIGYDLYLKLLEEAIRNLKGEA----PKEEITTTIDIKVNAYID 1032
Query: 502 SEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
S YI +EM + A + +D +++ +E L ++G P +E LL+ Y++ +A
Sbjct: 1033 SSYIEDENLRLEMYKKIASIESRED---MIEISEELVDRFGDYPKPVEALLEIAYLKAIA 1089
Query: 561 ADIGITKIYASGKMVGMK 578
+ + IT+I G +V +K
Sbjct: 1090 SQLYITEITEKGNVVILK 1107
>gi|314932725|ref|ZP_07840095.1| transcription-repair coupling factor [Staphylococcus caprae C87]
gi|313654555|gb|EFS18307.1| transcription-repair coupling factor [Staphylococcus caprae C87]
Length = 1169
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 232/557 (41%), Positives = 357/557 (64%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGEDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ERE PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQGKSIEEIKGDM-ERERPMDRLLCGDVGYGKTEVAVRAAFKAVME 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER YP +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLIERMQDYP-VEIQLVSRFRTTKEVRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPEANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ + V++++N++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEETPDAPEVEVELNLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K +D L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQNEQAKIEIYKKLRKVETED--QLFDVKDELIDRFNDYPVEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A GIT I GK V
Sbjct: 1085 HALHAGITLIKDKGKTV 1101
>gi|242371667|ref|ZP_04817241.1| transcription-repair coupling factor [Staphylococcus epidermidis
M23864:W1]
gi|242350616|gb|EES42217.1| transcription-repair coupling factor [Staphylococcus epidermidis
M23864:W1]
Length = 1169
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 230/557 (41%), Positives = 358/557 (64%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYKYGEDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ERE PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQDKSIEEIKSDM-ERERPMDRLLCGDVGYGKTEVAVRAAFKAVME 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E +E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLVSRFRTTKEIKETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ + V++++N++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEETPDAPEVEVELNLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K +D L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQNEQAKIEIYKKLRKVETED--QLFDVKDELIDRFNDYPVEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A GIT I GK +
Sbjct: 1085 HALHAGITLIKDKGKTI 1101
>gi|223044420|ref|ZP_03614453.1| transcription-repair coupling factor [Staphylococcus capitis SK14]
gi|222442209|gb|EEE48321.1| transcription-repair coupling factor [Staphylococcus capitis SK14]
Length = 1169
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 232/557 (41%), Positives = 357/557 (64%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGEDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ERE PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQGKSIEEIKGDM-ERERPMDRLLCGDVGYGKTEVAVRAAFKAVME 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER YP +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLIERMQDYP-VEIQLVSRFRTTKEVRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPEANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ + V++++N++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEETPDAPEVEVELNLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K +D L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQNEQAKIEIYKKLRKVETED--QLFDVKDELIDRFNDYPVEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A GIT I GK V
Sbjct: 1085 HALHAGITLIKDKGKTV 1101
>gi|148657760|ref|YP_001277965.1| transcription-repair coupling factor [Roseiflexus sp. RS-1]
gi|148569870|gb|ABQ92015.1| transcription-repair coupling factor [Roseiflexus sp. RS-1]
Length = 1265
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 240/587 (40%), Positives = 346/587 (58%), Gaps = 51/587 (8%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYE 89
L++L T WER K K + A+Q + +L+ LY R L + P E A FPY
Sbjct: 609 LTRLG-TQDWERAKRKARAAVQDLAEELITLYAQRQLAEGHAFSPDTEWQRELEASFPYV 667
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ KA +DV+RD+ E+ PMDRL+CGDVGFGKTEVALRA F V GKQ VLAPT
Sbjct: 668 ETPDQLKAIIDVKRDM-EQPQPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAVLAPTT 726
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
VL +QH+D S R + +P +++ ++SRF+S E+ E + + G ++II+GTH LL V
Sbjct: 727 VLVQQHYDTFSRRMAAFP-VRIDMISRFRSAKEQSEIVQRLARGEIDIIIGTHRLLSKDV 785
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
V+ +LGLLV+DEEQRFGV+ KE+I + +VDVLTL+ATPIPRTL++AL G RD S+I T
Sbjct: 786 VFKDLGLLVIDEEQRFGVRHKERIKQLRTNVDVLTLTATPIPRTLHMALAGIRDLSIIDT 845
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP +R+PIKT++ + + + AI ELDRGGQV++V R++ + D L++ P I
Sbjct: 846 PPEDRIPIKTYVLPYDERLIREAILRELDRGGQVYFVHNRVQSIYYVADRLRRLVPEARI 905
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
A+ HGQ QLE M F G +L+CT I+ESGLD+ NANTII+ D FGLAQLYQ
Sbjct: 906 AVGHGQLEEHQLERVMLDFFTGRDDVLVCTTIIESGLDVPNANTIIIDDATNFGLAQLYQ 965
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR+ + A+AYLFY + + +A ERL A++E ELG GF++A +D+ IRG G +
Sbjct: 966 LRGRVGRSTQRAYAYLFYKSERPSTPEAQERLRAIQEATELGAGFRIAMRDLEIRGAGNL 1025
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVI-------------------------- 483
G +Q+G + VG DL+ +L +++ + + +
Sbjct: 1026 LGAEQSGHIAAVGFDLYSRLLEQAVRTLKQRLIATNFITGTDAMRTSPGAPAQPSDGQTP 1085
Query: 484 -----SVPYKS--------------VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQ 524
SVP + V +D+ ++ LP +YI ++ + + A Q
Sbjct: 1086 PPARSSVPSRRPAVRVDEKVLISPLVTLDLPLDAYLPVDYIP--DDRVRLAVYQRMAEAQ 1143
Query: 525 DIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYAS 571
+ + LR ++G+ P + LL L ++ +A G+T + +
Sbjct: 1144 TPEAVRDLRQELRDRFGELPEPADQLLIWLRIKALALAAGVTSVVTT 1190
>gi|417906926|ref|ZP_12550704.1| transcription-repair coupling factor [Staphylococcus capitis VCU116]
gi|341597127|gb|EGS39695.1| transcription-repair coupling factor [Staphylococcus capitis VCU116]
Length = 1169
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/557 (41%), Positives = 357/557 (64%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGEDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ERE PMDRL+CGDVG+GKTEVA+RA F +
Sbjct: 609 QSAFEHDFPYELTPDQGKSIEEIKGDM-ERERPMDRLLCGDVGYGKTEVAVRAAFKAIME 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER YP +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLIERMQDYP-VEIQLVSRFRTTKEVRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPEANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ + V++++N++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEETPDAPEVEVELNLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K +D L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQNEQAKIEIYKKLRKVETED--QLFDVKDELIDRFNDYPVEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A GIT I GK V
Sbjct: 1085 HALHAGITLIKDKGKTV 1101
>gi|418324793|ref|ZP_12936019.1| transcription-repair coupling factor [Staphylococcus pettenkoferi
VCU012]
gi|365224116|gb|EHM65383.1| transcription-repair coupling factor [Staphylococcus pettenkoferi
VCU012]
Length = 1170
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/557 (41%), Positives = 357/557 (64%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPA 78
+ +E K PR L+KL + W++ K K + +++ + +L+ELY R + Q P P
Sbjct: 552 YVASEDKSPR-LNKLG-GSEWKKTKAKVQQSVEDIADELIELYKEREMAQGHKFGPDTPE 609
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+F FP+E TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 610 QHDFEMDFPFELTPDQAKSIDEIKGDM-ERTKPMDRLLCGDVGYGKTEVAVRAAFKAVME 668
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P I++ L+SRF++ E ++ + +K G+++I+
Sbjct: 669 GKQVAFLVPTTILAQQHYETLIERMQDFP-IEIQLMSRFRTSKEIKQTKEGLKSGYVDIV 727
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG V Y +LGLLVVDEEQRFGV+ KEKI K +VDVLTL+ATPIPRTL++++
Sbjct: 728 VGTHKLLGKTVEYKDLGLLVVDEEQRFGVRHKEKIKQLKTNVDVLTLTATPIPRTLHMSM 787
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 788 LGVRDLSVIETPPENRFPVQTYVVEQNSNFIKEALERELSRDGQVFYLYNQVQSIYEKRE 847
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 848 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEFDILVTTTIIETGVDVPNANTLIIEN 907
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 908 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPMNKVLTETAEDRLQAIKEFTELGSGFKIAM 967
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ+G + +VG DL+ +ML E++++ V+I++NI+
Sbjct: 968 RDLNIRGAGNLLGKQQSGFIDSVGFDLYSQMLEEAVNEKRGIKEEKPDAPEVEIELNIDA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP++YI + + +E+ + + + + L + L ++ + P +E LL + ++
Sbjct: 1028 YLPAQYIPNEQAKIEIYKKLRQL--ETMEQLRDVKDELIDRFNEYPPEVERLLDMMEIKV 1085
Query: 559 MAADIGITKIYASGKMV 575
A GIT I GK V
Sbjct: 1086 YALHAGITSIKEQGKQV 1102
>gi|374578790|ref|ZP_09651884.1| transcription-repair coupling factor Mfd [Desulfosporosinus youngiae
DSM 17734]
gi|374414872|gb|EHQ87307.1| transcription-repair coupling factor Mfd [Desulfosporosinus youngiae
DSM 17734]
Length = 1179
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/542 (41%), Positives = 347/542 (64%), Gaps = 7/542 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK-NPAIAEFAAQFPYEPTPDQKK 96
+ W + K K + A+++M +DL++LY R K + + N EF +FPY TPDQ +
Sbjct: 576 SEWHKVKKKTRSAVKEMAIDLLKLYAQRESVKGHSFSQDNVWQTEFEEKFPYIETPDQLQ 635
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
+ DV+ D+ R PMDRL+CGDVG+GKTEVALRA F V KQ VL PT +LA+QHF
Sbjct: 636 SIADVKSDMM-RPRPMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVAVLVPTTILAQQHF 694
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF+ YP I + +LSRF+S+ E++E + +K G +++IVGTH +L V +N+LGL
Sbjct: 695 NTFKERFTGYP-ITIEMLSRFRSQKEQKEIIQGLKEGRIDVIVGTHRILSEAVKFNDLGL 753
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV KEK+ + K +VDVLTLSATPIPRTL+++L G RD S+I TPP R P
Sbjct: 754 LVIDEEQRFGVAHKEKLKTLKGNVDVLTLSATPIPRTLHMSLVGVRDMSVIETPPEGRYP 813
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T+++ F + V AI+ E+ RGGQVFYV R++ +++ FL + P +AHGQ
Sbjct: 814 VQTYVTEFRADVVREAIRREIQRGGQVFYVHNRVEDMDQVTHFLNELVPEAKFGVAHGQM 873
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
R LE M F + + +L+ T I+E+GLD+ NANT+I+ + +FGL+QLYQLRGRVGR
Sbjct: 874 RERDLERVMLAFLEHEMDVLVSTTIIETGLDMPNANTLIIDEADRFGLSQLYQLRGRVGR 933
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
++++A+ YL Y + +L++ A +RLAA+ E E G GF++A +D+ IRG G + G QQ G
Sbjct: 934 SNRKAYTYLLYKPQKVLTEVAEKRLAAIREFTEFGAGFKIAMRDLEIRGAGNLIGAQQHG 993
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ VG +++ +ML E++ ++ + V S I++ ++ LP +Y+ + +
Sbjct: 994 HLAAVGFEMYSQMLKEAVQELKGETIEEVVEPS--IELQVDAFLPDDYVADRQTKATLYQ 1051
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVG 576
+D L + + L ++G P +E L++ + ++ +A+ + I +I + + V
Sbjct: 1052 RLAMVRNED--QLSEMLDELVDRFGTPPREVEQLVEIIRIKLLASSLKIEQIQQAKQYVN 1109
Query: 577 MK 578
++
Sbjct: 1110 LR 1111
>gi|189485430|ref|YP_001956371.1| transcription-repair coupling factor Mfd [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287389|dbj|BAG13910.1| transcription-repair coupling factor Mfd [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 1048
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 240/565 (42%), Positives = 348/565 (61%), Gaps = 6/565 (1%)
Query: 36 DTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQ 94
DT AWER K++ + A K +L++LY+ R KR P+ P E FPY+ TP Q
Sbjct: 449 DTLAWERVKSRAREAAAKFAEELLKLYVQRSLIKRKPFGPGTAWEKELENTFPYDETPGQ 508
Query: 95 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 154
KA D++ D + PM+RL+CGDVG+GKTEV +RA F V Q +L PT VLA+Q
Sbjct: 509 LKAIEDIKNDFL-KPYPMERLVCGDVGYGKTEVVVRAAFKAVHESMQTAILVPTTVLAQQ 567
Query: 155 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNL 214
H++ +R S +P IKV +LSRFQ+KA+++E +++G ++II+GTH LL V + NL
Sbjct: 568 HYNTFCDRLSPFP-IKVAVLSRFQTKAKQKEITQDLENGLIDIIIGTHRLLQKDVKFKNL 626
Query: 215 GLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER 274
GLLV+DEE RFGVKQKEKI S K ++D+L LSATPIPRTL +L+GFRD S+I TPP R
Sbjct: 627 GLLVIDEEHRFGVKQKEKIKSMKKNIDILMLSATPIPRTLSSSLSGFRDLSVIETPPFGR 686
Query: 275 LPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHG 334
LPI+T +S + + + + I+ EL R GQVFYV +I+ + +++ PG+ + I +G
Sbjct: 687 LPIETSISLYDENLIKNIIEAELSRNGQVFYVYNKIETILTKAASIRELVPGIKLGIIYG 746
Query: 335 QQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRV 394
Q ++ +EE M KF + +L+ T I+ESGLDI + NT+I+++V+ FGL+QLYQLRGR+
Sbjct: 747 QMKAKDIEEIMWKFINMELDVLLATTIIESGLDIPSVNTMIIEEVENFGLSQLYQLRGRI 806
Query: 395 GRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQ 454
GR K+A+ YLFY DK+ LSD+A++RL A+ E ELG GF+LA KD+ IRG G I Q
Sbjct: 807 GRDRKKAYCYLFYKDKT-LSDEAVKRLEAIREFGELGSGFRLALKDLEIRGAGGILSSSQ 865
Query: 455 TGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEM 514
G V ++G D+F ++L E KV V S K+ ID+ IN +P YI + +
Sbjct: 866 HGFVRDIGYDMFAKLLEEEGKKVKGDAVESQEKKNTVIDLQINALIPPTYIEGEDIRILF 925
Query: 515 VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM 574
+ A Q+I + L ++GK P ++L + +R A + I +I
Sbjct: 926 YRKLSNA--QNIKAIENIKNELLDRFGKIPNETQMLFEITNLRLTAEKLDIERIAEDNNY 983
Query: 575 VGMKTNMNKKVFKMMIDSMTSEVHR 599
+ + + K I +T++ R
Sbjct: 984 IYLYFSRKADFSKADITKLTNDYSR 1008
>gi|126662926|ref|ZP_01733924.1| transcription-repair coupling factor [Flavobacteria bacterium BAL38]
gi|126624584|gb|EAZ95274.1| transcription-repair coupling factor [Flavobacteria bacterium BAL38]
Length = 1087
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/562 (40%), Positives = 341/562 (60%), Gaps = 18/562 (3%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQF 86
P + KL + AW+ K K K I+ + +L++LY R K + P + E + F
Sbjct: 468 PPKIYKLG-SNAWKTLKQKTKARIKHIAFNLIQLYAKRRLDKGFQFSPDSYLQKELESSF 526
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
YE TPDQ A DV+ D+ E E PMDRL+CGDVGFGKTEVA+RA F V GKQ VL
Sbjct: 527 IYEDTPDQITATADVKADM-ENERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLV 585
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA QH+ SER P + V ++RF++ +K E L ++ G ++I++GTH L+
Sbjct: 586 PTTILAYQHYRTFSERLKDMP-VTVSYVNRFRTAKQKSETLQKLQEGKVDILIGTHQLVN 644
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
VV+ +LGLL++DEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L RD S+
Sbjct: 645 KNVVFKDLGLLIIDEEQKFGVNVKDKLKTIATNVDTLTLTATPIPRTLQFSLMAARDLSV 704
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPPP R PI+TH+ F++E + AI YE+ RGGQVF++ RI+ ++E +Q+ PG
Sbjct: 705 ITTPPPNRYPIETHVIRFNEEAIRDAISYEIQRGGQVFFINNRIENIKEVAGMIQRLVPG 764
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+ I HGQ ++LEE M F +G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 765 AKVGIGHGQMEGKKLEELMLAFMEGEFDVLVATTIIESGLDVPNANTIFINNANNFGLSD 824
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+Q+RGRVGR++K+A Y P S+++ +A +R+ ALE+ ELG GF +A KD+ IRG
Sbjct: 825 LHQMRGRVGRSNKKAFCYFITPPYSMMTGEAQKRITALEQFSELGSGFNIAMKDLEIRGA 884
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP-----------YKSVQIDIN 495
G + G +Q+G + +G D + +++ E++ ++ E+ + K +QID +
Sbjct: 885 GDLLGGEQSGFINEIGFDTYQKIMNEAIDELKENEFKDLYQEENDIETKEFVKDIQIDTD 944
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
P EYIN++ + + NE + +D L QF + L ++G P LL +
Sbjct: 945 FELLFPDEYINNITERLNLYNELSQI--KDEATLQQFEQKLIDRFGALPKPAIALLNSVR 1002
Query: 556 VRRMAADIGITKIY-ASGKMVG 576
++ A +GI ++ GKMVG
Sbjct: 1003 IKWKATAMGIERLLMKQGKMVG 1024
>gi|414161807|ref|ZP_11418058.1| transcription-repair-coupling factor [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410875168|gb|EKS23094.1| transcription-repair-coupling factor [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 1172
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/559 (41%), Positives = 357/559 (63%), Gaps = 12/559 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPA 78
+ +E K P+ L+KL T W++ K K + +++ + +L+ELY R + + P
Sbjct: 552 YVASEDKTPK-LNKLG-GTEWKKTKAKVQQSVEDIADELIELYREREMAEGHQFGPDTEQ 609
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY+ T DQ K+ +++ D+ E+E PMDRL+CGDVG+GKTEVALRA F V
Sbjct: 610 QHEFEMDFPYDLTADQAKSIDEIKEDM-EKERPMDRLLCGDVGYGKTEVALRAAFKAVME 668
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P + + L+SRF++ E +E +K G ++I+
Sbjct: 669 GKQVAFLVPTTILAQQHYETLLERMQDFP-VNIQLMSRFRTPKEIKETKQGLKDGIIDIV 727
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL V Y +LGLLVVDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 728 VGTHKLLAKDVKYKDLGLLVVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPRTLHMSM 787
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL RGGQ FY+ R++ + E +
Sbjct: 788 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELARGGQAFYLYNRVQSIYEKRE 847
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P I +AHG+ R+LE+TM F G IL+ T I+E+G+D+ NANT+I+++
Sbjct: 848 QLQMLMPDATIGVAHGRMTERELEDTMIGFVNGEYDILVTTTIIETGVDVPNANTLIIEE 907
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + + Y +P +LS+ A ERL A++E ELG GF++A
Sbjct: 908 ADRFGLSQLYQLRGRVGRSSRVGYTYFLHPTNKVLSETAEERLQAIKEFTELGSGFKIAM 967
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS--VQIDINI 496
+D+ IRG G + G+QQ G + +VG DL+ +ML E+ V+E I ++ ++I++NI
Sbjct: 968 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEA---VNEKRGIKQESETPEIEIELNI 1024
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
+ LP+ YI + ++ +E+ + + ++ LM + L ++ P +E LL + +
Sbjct: 1025 DAYLPTSYIPNEQSKIEIYKKLRQIETEN--ELMDIKDELIDRFNDYPVEVERLLDIVEI 1082
Query: 557 RRMAADIGITKIYASGKMV 575
R A +G+T+I +GK +
Sbjct: 1083 RIHALHVGVTRIKDTGKAI 1101
>gi|406980787|gb|EKE02348.1| hypothetical protein ACD_20C00398G0001 [uncultured bacterium]
Length = 1183
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/530 (43%), Positives = 337/530 (63%), Gaps = 7/530 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAF 98
W K K K AI+ + DL+ LY R K + + P E FPY TPDQ +A
Sbjct: 575 WTGVKKKVKNAIRDIAQDLLNLYAKRAKTNGFIFESDSPWQIEMEDAFPYTETPDQLQAI 634
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++ + D+ E E PMDRLICGDVGFGKTEVA+RAIF + +GKQA +LAPT +LA+QH+
Sbjct: 635 INTKSDM-ESEKPMDRLICGDVGFGKTEVAIRAIFKAILSGKQAALLAPTTILAQQHYQT 693
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+RF YP +K+ LLSRF++ +++E + + G ++++GTH LL + + N+GLLV
Sbjct: 694 FVDRFKPYP-VKIELLSRFRTPKQQKEAIKKLLTGECDLVIGTHRLLQKDIQFKNIGLLV 752
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEE RFGV KEK+ + VDV+TLSATPIPRTLY+AL+G R+ SLI+TPP R PIK
Sbjct: 753 IDEEHRFGVAHKEKLKHLRAEVDVMTLSATPIPRTLYMALSGVREMSLINTPPINRAPIK 812
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ V +AI +EL+R GQ++++ R++ + + LQ+ P IA+AHGQ
Sbjct: 813 TYVGEYNNSMVRTAISHELEREGQIYFLHNRVQSIYKVAKDLQELIPAARIAVAHGQMQE 872
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
++LE+ M +F+ IL+CT I+ESGLDI N NTIIV D +FGLAQLYQ+RGRVGR++
Sbjct: 873 KELEKAMYEFSTHQYDILVCTTIIESGLDIPNVNTIIVDDSDKFGLAQLYQIRGRVGRSE 932
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+A+AY FY LL+ +A +RL A+++ LG G+Q+A +D+ IRG G I G Q G +
Sbjct: 933 TQAYAYCFYRPNKLLTPEAKDRLKAIKDFTTLGSGYQIALRDLEIRGVGNILGANQHGHM 992
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +L ES+ ++ V + +DINI +P E++ + +M+
Sbjct: 993 LSVGFDLYCSLLDESIRELQNQKVDK--KEPPIVDINITAYIPDEWVG--DKDQKMIEYK 1048
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
A + + L + + ++G P ++ L K + +R +AA+IGI I
Sbjct: 1049 RLADVESLKELEIIQDEWKDRFGDIPVEVQRLFKIIKIRLIAAEIGINLI 1098
>gi|392972511|ref|ZP_10337900.1| transcription-repair-coupling factor [Staphylococcus equorum subsp.
equorum Mu2]
gi|392509484|emb|CCI61207.1| transcription-repair-coupling factor [Staphylococcus equorum subsp.
equorum Mu2]
Length = 1170
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 234/557 (42%), Positives = 352/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
+ +E K PR L+KL T W++ K K + +++ M +L++LY R Y P
Sbjct: 552 YVASEDKTPR-LNKLG-GTEWKKTKAKVQQSVEDMADELIDLYKEREMSVGYKYGPDTAE 609
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPYE TPDQ K+ ++++D+ E E PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 610 QNEFEIDFPYELTPDQGKSIEEIKQDM-EIERPMDRLLCGDVGYGKTEVAVRAAFKAVME 668
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P I+V L+SRF+S E +E + +K G ++I+
Sbjct: 669 GKQVAFLVPTTILAQQHYETLIERMQDFP-IEVQLISRFRSTKEVKETKEKLKSGFVDIV 727
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I S K +VDVLTL+ATPIPRTL++++
Sbjct: 728 VGTHKLLSKDIHYKDLGLLIVDEEQRFGVRHKERIKSLKTNVDVLTLTATPIPRTLHMSM 787
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 788 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSREGQVFYLYNKVQSIYEKRE 847
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +I IAHGQ LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 848 QLQMLMPEANIGIAHGQMKEGDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIED 907
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +LS+ A +RL A++E ELG GF++A
Sbjct: 908 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLSETAEDRLQAIKEFTELGSGFKIAM 967
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ ++I++NI+
Sbjct: 968 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGVKDEKQDAPEIEIELNIDA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + ++ +E+ + K + LM + L ++ P +E LL + ++
Sbjct: 1028 YLPAEYIPNEQSKIEIYKKLRKIETE--AQLMDVKDELIDRFNDYPIEVERLLDMMEIKV 1085
Query: 559 MAADIGITKIYASGKMV 575
A + G+ I GK V
Sbjct: 1086 HALNAGVALIKDVGKKV 1102
>gi|389579898|ref|ZP_10169925.1| transcription-repair coupling factor Mfd [Desulfobacter postgatei
2ac9]
gi|389401533|gb|EIM63755.1| transcription-repair coupling factor Mfd [Desulfobacter postgatei
2ac9]
Length = 1160
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 229/538 (42%), Positives = 347/538 (64%), Gaps = 17/538 (3%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQK-----RPPYPKNPAIAEFAAQFPYEPT 91
+ +W K K + ++KM DL++LY R K RP N +F A FPYE T
Sbjct: 565 SKSWTNSKAKARAEVEKMAADLLDLYARRKVAKGFSFSRPDNYYN----DFEAGFPYEET 620
Query: 92 PDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 151
DQ +A DV D+ E++TPMDRL+CGDVG+GKTEVA+RA F V+ GKQ ++ PT +L
Sbjct: 621 RDQLRAIDDVHLDM-EKDTPMDRLVCGDVGYGKTEVAIRAAFKAVNDGKQVALVVPTTIL 679
Query: 152 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVY 211
A+QH + +RF+ YP I + LSRF+++ E+ + L G ++I++GTH LL VV+
Sbjct: 680 AEQHLNTFRDRFNNYPVI-IECLSRFRTRKEQTDILKRTAGGTVDIVIGTHRLLQKDVVF 738
Query: 212 NNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPP 271
+LGLL++DEEQRFGVK KEK+ + +VDVL LSATPIPRTL+++LTG RD S+I+TPP
Sbjct: 739 KSLGLLIIDEEQRFGVKHKEKLKEKRAAVDVLALSATPIPRTLHMSLTGMRDISVITTPP 798
Query: 272 PERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAI 331
+R PI ++++ + + V A+ ELDR GQVF+V IK + + + +Q+ P I +
Sbjct: 799 ADRRPIISYITKYEEPLVREAVIKELDRKGQVFFVHNNIKTIFKTAENIQKLIPDAKIGV 858
Query: 332 AHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLR 391
AHG+ +LE+ ME+F + I +L+CT I+ESGLDI +ANT+I+ ++FGL+Q+YQLR
Sbjct: 859 AHGRLSETELEKVMEQFIRQQINVLVCTTIIESGLDIPSANTMIIDKAERFGLSQIYQLR 918
Query: 392 GRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFG 451
GR+GR D++A+AYLF D+S L+ A +RLAAL E R+LG GFQ+A KD+ IRG GT G
Sbjct: 919 GRIGRGDEQAYAYLFIEDESRLTKDARKRLAALMEHRDLGSGFQIAMKDLQIRGAGTALG 978
Query: 452 EQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPSEYINHLEN 510
Q+G + VG D+F ++L ++ + EH + P + +I+ +++ P +YI +E
Sbjct: 979 ASQSGHIAAVGYDMFLKLLDNAVKDMKGEH--LPEPLEP-EINASMSSGFPDDYIESVEQ 1035
Query: 511 PMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+ + + + + + + + L +YG+ P S E +L K+ +R A G+ ++
Sbjct: 1036 RLTIYRRLSRLTQ--VSDIAEMKKELVDRYGELPKSAENMLLKIMLRIFAIKAGVKRL 1091
>gi|429728200|ref|ZP_19262938.1| transcription-repair coupling factor [Peptostreptococcus anaerobius
VPI 4330]
gi|429150342|gb|EKX93262.1| transcription-repair coupling factor [Peptostreptococcus anaerobius
VPI 4330]
Length = 1133
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 225/542 (41%), Positives = 341/542 (62%), Gaps = 9/542 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQKKAF 98
W + K K K I+ M DL+ELY R +K Y K+ EF +FPY+ T DQ KA
Sbjct: 566 WSKAKRKVKKEIEDMTQDLLELYSKRESRKGYKYSKDTIWQTEFEEKFPYQETDDQLKAI 625
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+ ++D+ E + MDRLICGDVG+GKTEVA+RAIF V KQ VL PT +LA+QHF+
Sbjct: 626 KETKKDM-ESQKAMDRLICGDVGYGKTEVAIRAIFKAVMDNKQVAVLVPTTILAQQHFNT 684
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ERF YP I+V +LSRF++ ++ E + K G +++++GTH ++ + LGL+V
Sbjct: 685 FTERFEDYP-IRVEVLSRFKTPKQQREIIADAKKGLVDVLIGTHRIVSKDIAMPRLGLIV 743
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
VDEEQRFGVK KE + ++ VDVLTLSATPIPRTL+++L+G RD S+I PP ER P+
Sbjct: 744 VDEEQRFGVKHKEALKKLRVDVDVLTLSATPIPRTLHMSLSGIRDMSIIEEPPQERYPVM 803
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T+++ + + I EL RGGQVF+V R++G+E +++ P +I +AHG+ S
Sbjct: 804 TYVTEAKESIIQDEIYRELARGGQVFFVYNRVEGIETIASKIKKLVPEANIGVAHGRMTS 863
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
QLE T+ F +L+CT I+E+G+DI NANT+I+ D + GL+QLYQLRGRVGR++
Sbjct: 864 SQLENTVLSFLSKEFDVLVCTTIIETGMDIANANTMIIYDADKMGLSQLYQLRGRVGRSN 923
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
K+ +AYL Y ++S+ + +RL A++E E G GF++A +D+ IRG G + G QQ G +
Sbjct: 924 KQGYAYLMYERNKVISEVSEKRLKAIKEFTEFGSGFKVAMRDLEIRGAGDVMGSQQHGHM 983
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE- 517
+G +L+ +ML E++ K+ V V V+ID+ +N +PS YI +EM +
Sbjct: 984 EVIGYELYVKMLNEAIRKIKGDPVEEVL--DVEIDLTVNAYIPSSYIEDEVTKLEMYKKI 1041
Query: 518 AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGM 577
A +++D++ + E L ++ P + LL Y++ + + I KI +G M+ +
Sbjct: 1042 AAIDSKEDMYDIQ---EELEDRFSDIPKETQTLLNIAYIKSLCKTLKINKIKQTGDMIDL 1098
Query: 578 KT 579
++
Sbjct: 1099 ES 1100
>gi|359410006|ref|ZP_09202471.1| transcription-repair coupling factor [Clostridium sp. DL-VIII]
gi|357168890|gb|EHI97064.1| transcription-repair coupling factor [Clostridium sp. DL-VIII]
Length = 1167
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 243/609 (39%), Positives = 375/609 (61%), Gaps = 20/609 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K P+ ++KL + W++ K K + +I ++ DL++LY R K +PK+ +
Sbjct: 561 SEGKSPK-VNKLG-SAEWQKAKAKARKSINEIAEDLVKLYAMRSTVKGHKFPKDTEWQKQ 618
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F +FP+E TPDQ + ++++D+ E + PMDRL+CGDVG+GKTEVALRA F V GKQ
Sbjct: 619 FEDEFPFEETPDQLTSLEEIKQDM-ESDKPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQ 677
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH+ + RFS +P IK+ ++SRF++ ++++ L +K G+L+I++GT
Sbjct: 678 VAILVPTTILAEQHYKNMKNRFSDFP-IKIDMVSRFRTAKQQKDILQKVKEGNLDILIGT 736
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H L+ + + +LGLLVVDEEQRFGVKQKEKI K +VDVLTLSATPIPRTL+++L+G
Sbjct: 737 HRLVSKDIQFKDLGLLVVDEEQRFGVKQKEKIKGIKKNVDVLTLSATPIPRTLHMSLSGV 796
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP ER P++T++ + + + AI E+ R GQV++V R++ +E ++Q
Sbjct: 797 RDISVIETPPEERYPVQTYVVEQNDQLIRDAILREIGRDGQVYFVYNRVEDIERMAKYVQ 856
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + +AHGQ RQLE+ M F G +L+CT I+E+G+DIQN NTII+ D +
Sbjct: 857 TLVPESKVGVAHGQMAERQLEKEMYDFMSGEYNVLVCTTIIETGMDIQNVNTIIIYDADK 916
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AYL Y +L++ A +RL AL++ ELG GF++A +D+
Sbjct: 917 MGLSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALKDFTELGSGFKIAMRDL 976
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G Q G + ++G DL+ ML E K+ + + P ++ +DI ++ +
Sbjct: 977 EIRGAGNMMGSSQHGHMASIGYDLYCRML-EDTVKILKGEIQKEPIETT-LDIKVDAFIS 1034
Query: 502 SEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
YI E+ ++ + +K AA + I E L +Y K P + L+ Y++ A
Sbjct: 1035 ESYI---EDEIQKIEVYKKIAAIEGIDDYNDIKEELEDRYSKIPEPVYNLMDIAYIKSQA 1091
Query: 561 ADIGITKIYASGKMV----GMKTNMNKKVFKMMIDSMTSEV-----HRNSLTFEGDQIKA 611
I I +I + K + N K +FK ++D + V +F+ IK
Sbjct: 1092 KSIFIEEIKENSKEIIFRFAQDENGYKNIFKTLMDKYKNSVVLKFGTNPYFSFKLKYIKK 1151
Query: 612 ELLLELPRE 620
E LE +E
Sbjct: 1152 ENKLEFLKE 1160
>gi|125975114|ref|YP_001039024.1| transcription-repair coupling factor [Clostridium thermocellum ATCC
27405]
gi|125715339|gb|ABN53831.1| transcription-repair coupling factor [Clostridium thermocellum ATCC
27405]
Length = 1178
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 237/606 (39%), Positives = 374/606 (61%), Gaps = 19/606 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K P+ LSKL T W + + + K +++++ +L+ LY R + + K+ +
Sbjct: 566 SEGKTPK-LSKLGGTD-WAKTRARTKESLKELAQELINLYAQREMAEGHAFGKDTVWQKQ 623
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY+ T DQ + +++RD+ E PMDRL+CGDVG+GKTEVA+RA+F V GKQ
Sbjct: 624 FEDLFPYQETEDQLRCIEEIKRDM-ESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMDGKQ 682
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT VLA+QH++ ER +P I V +LSRF+++AE++ L +K G +++++GT
Sbjct: 683 VAYLVPTTVLAQQHYNTFKERMKDFP-ITVEVLSRFRTQAEQKRILKDVKAGMVDVLIGT 741
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V + +LGLLV+DEEQRFGV KEKI K ++DVLTL+ATPIPRTL+++L G
Sbjct: 742 HRLLQKDVCFKDLGLLVIDEEQRFGVTHKEKIKRMKTNIDVLTLTATPIPRTLHMSLVGI 801
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S I PP ER P++T++ ++ E V AI E+ RGGQVFY+ R++ + + +Q
Sbjct: 802 RDISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNRVRAINQKAAEIQ 861
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P +AIAHGQ +LE M +F G IL+CT I+ESGLD+ N NTIIV+D +
Sbjct: 862 KLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVEDADK 921
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GLAQLYQLRGRVGR+++ A+AY+ Y +LS+ A +RL A++E E G GF++A +D+
Sbjct: 922 MGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAMRDL 981
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
+RG G + G QQ G + +VG D++ ++L E+++++ ++ + + ID+N++ +
Sbjct: 982 QLRGAGNLLGPQQHGHIDSVGYDMYCKLLAEAVNEL-RGIPVTKEDEEISIDVNVSAYID 1040
Query: 502 SEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
++YI ++M + A EQD+ + + L +YG+ P ++ LL+ Y++ +A
Sbjct: 1041 NDYIGDENQKIDMYKKIASINDEQDV---IDAEDELMDRYGEIPQPVKNLLQIAYIKSLA 1097
Query: 561 ADIGITKIYASGKMV----GMKTNMNKKVFKMMIDS-----MTSEVHRNSLTFEGDQIKA 611
G + + V N+N +V ++D + + +R +TF+ +K
Sbjct: 1098 KACGFSSVQEKNDTVIFQYSESKNINFEVLGKLMDKYRRKLLFTASNRPYITFKTTGVKG 1157
Query: 612 ELLLEL 617
E LLE+
Sbjct: 1158 EELLEI 1163
>gi|320537605|ref|ZP_08037541.1| transcription-repair coupling factor [Treponema phagedenis F0421]
gi|320145523|gb|EFW37203.1| transcription-repair coupling factor [Treponema phagedenis F0421]
Length = 1148
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 234/594 (39%), Positives = 365/594 (61%), Gaps = 12/594 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
NE + PR + + +WE RK K K +++ + L++LY R + + P +
Sbjct: 543 NEGEAPRL--DILGSKSWENRKNKVKKSVEDIANKLIDLYSRRKAARGHAFQPDDEWQLA 600
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPYE T DQ +V+ D+ E+ PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 601 FEAAFPYEETDDQLTCVAEVKADM-EKPVPMDRLVCGDVGYGKTEVAMRAAFKAIMGGKQ 659
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L+PT +LA+QHF+ + ERF +P + V +SRF +++E+++ L+ +K+G ++I+VGT
Sbjct: 660 VAFLSPTTILAEQHFETLDERFKNFP-VTVARMSRFITRSEQKKILEQLKNGDIDILVGT 718
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H ++ VV+ +LGL+++DEEQRFGVK KE++ K +VD L LSATPIPRTL+++L
Sbjct: 719 HRIIQKDVVFKDLGLMIIDEEQRFGVKDKERLKQMKTNVDCLALSATPIPRTLHMSLLKI 778
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD SL++TPP R PI+T + F EKV +AI+ E++RGGQVFY+ R++ L+E LQ
Sbjct: 779 RDMSLLTTPPQNRRPIETVIQEFDPEKVAAAIRQEVERGGQVFYLHNRVETLDETARMLQ 838
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P V I AHGQ S +LE+ ++F G +LI T I+E+G+DI NANTII+
Sbjct: 839 NLVPEVLIDSAHGQMNSDELEDIFKRFNMGGFHVLIATTIIENGIDIPNANTIIIDRADM 898
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
+G++QLYQLRGRVGR+DK+A+AYL YP LS+ A++RL + + ELG GF++A KDM
Sbjct: 899 YGVSQLYQLRGRVGRSDKKAYAYLLYPKDRALSEIAMKRLQVISDFTELGSGFKIAMKDM 958
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G +Q+GD+ +VG DL+ +L E++ ++ P + V ++++ +P
Sbjct: 959 EIRGAGNLLGREQSGDIYSVGFDLYLRLLEEAIERL--QNADYEPPQEVLVELDYTGFIP 1016
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI+ E ME+ + AA L + + ++G+ P +E LL ++
Sbjct: 1017 DSYISVPETKMEIYKKI--AAVHTSEGLDRMYAEIIDRFGQPPEEVESLLALAEIKITCN 1074
Query: 562 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLL 615
+ I+ + G V ++ +V ++ ID + + +++ D K +L+
Sbjct: 1075 KLAISSLKERGGRVNIEF---MRVSRISIDKLLRMIKQSAGRVRLDSAKPNVLI 1125
>gi|403047728|ref|ZP_10903186.1| transcription-repair coupling factor [Staphylococcus sp. OJ82]
gi|402762469|gb|EJX16573.1| transcription-repair coupling factor [Staphylococcus sp. OJ82]
Length = 1170
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 234/557 (42%), Positives = 351/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
+ +E K PR L+KL T W++ K K + +++ M +L++LY R Y P
Sbjct: 552 YVASEDKTPR-LNKLG-GTEWKKTKAKVQQSVEDMADELIDLYKEREMSVGYKYGPDTAE 609
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPYE TPDQ K+ ++++D+ E E PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 610 QNEFEIDFPYELTPDQGKSIEEIKQDM-EIERPMDRLLCGDVGYGKTEVAVRAAFKAVME 668
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P I+V L+SRF+S E +E + +K G ++I+
Sbjct: 669 GKQVAFLVPTTILAQQHYETLIERMQDFP-IEVQLISRFRSTKEVKETKEKLKSGFVDIV 727
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I S K +VDVLTL+ATPIPRTL++++
Sbjct: 728 VGTHKLLSKDIHYKDLGLLIVDEEQRFGVRHKERIKSLKTNVDVLTLTATPIPRTLHMSM 787
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 788 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSREGQVFYLYNKVQSIYEKRE 847
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +I IAHGQ LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 848 QLQMLMPEANIGIAHGQMKEGDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIED 907
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +LS+ A +RL A++E ELG GF++A
Sbjct: 908 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLSETAEDRLQAIKEFTELGSGFKIAM 967
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ ++I++NI+
Sbjct: 968 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGVKDEKQDAPEIEIELNIDA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + ++ +E+ + K + LM + L ++ P E LL + ++
Sbjct: 1028 YLPAEYIPNEQSKIEIYKKLRKIETE--AQLMDVKDELIDRFNDYPIEAERLLDMMEIKV 1085
Query: 559 MAADIGITKIYASGKMV 575
A + G+ I GK V
Sbjct: 1086 HALNAGVALIKDVGKKV 1102
>gi|70727507|ref|YP_254423.1| transcription-repair coupling factor [Staphylococcus haemolyticus
JCSC1435]
gi|123748600|sp|Q4L3G0.1|MFD_STAHJ RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|68448233|dbj|BAE05817.1| transcription-repair coupling factor [Staphylococcus haemolyticus
JCSC1435]
Length = 1169
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/557 (40%), Positives = 357/557 (64%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L+ LY R Y ++ A
Sbjct: 551 YVASEDKSPK-LNKLG-GSEWKKTKAKVQQSVEDIADELIALYKEREMSVGYQYGEDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ERE PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEMDFPYELTPDQAKSIDEIKGDM-ERERPMDRLLCGDVGYGKTEVAVRAAFKAVME 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF+S E +E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLIERMQDFP-VQIELISRFRSTKEVKETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTMKTNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ R++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRDGQVFYLYNRVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F G IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPDANIAVAHGQMTERDLEETMLSFINGEFDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY + +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHSANKVLTETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ V++++N++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEEEPDAPEVEMELNLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K ++ L + L ++ P +E LL+ + ++
Sbjct: 1027 YLPAEYIQNEQAKIEIYKKLRKVETEE--QLFDIKDELIDRFNDYPVEVERLLEMVEIKI 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+T I GK +
Sbjct: 1085 HALHAGVTLIKDKGKQI 1101
>gi|289422646|ref|ZP_06424487.1| transcription-repair coupling factor [Peptostreptococcus anaerobius
653-L]
gi|289156946|gb|EFD05570.1| transcription-repair coupling factor [Peptostreptococcus anaerobius
653-L]
Length = 1133
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 225/542 (41%), Positives = 341/542 (62%), Gaps = 9/542 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQKKAF 98
W + K K K I+ M DL+ELY R +K Y K+ EF +FPY+ T DQ KA
Sbjct: 566 WSKAKRKVKKEIEDMTQDLLELYSKRESRKGYKYSKDTIWQTEFEEKFPYQETDDQLKAI 625
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+ ++D+ E + MDRLICGDVG+GKTEVA+RAIF V KQ VL PT +LA+QHF+
Sbjct: 626 KETKKDM-ESQKAMDRLICGDVGYGKTEVAIRAIFKAVMDNKQVAVLVPTTILAQQHFNT 684
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ERF YP I+V +LSRF++ ++ E + K G +++++GTH ++ + LGL+V
Sbjct: 685 FTERFEDYP-IRVEVLSRFKTPKQQREIIADAKKGLVDVLIGTHRIVSKDIAMPRLGLIV 743
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
VDEEQRFGVK KE + ++ VDVLTLSATPIPRTL+++L+G RD S+I PP ER P+
Sbjct: 744 VDEEQRFGVKHKEALKKLRVDVDVLTLSATPIPRTLHMSLSGIRDMSIIEEPPQERYPVM 803
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T+++ + + I EL RGGQVF+V R++G+E +++ P +I +AHG+ S
Sbjct: 804 TYVTEAKESIIQDEIYRELARGGQVFFVYNRVEGIETIASKIKKLVPEANIGVAHGRMTS 863
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
QLE T+ F +L+CT I+E+G+DI NANT+I+ D + GL+QLYQLRGRVGR++
Sbjct: 864 SQLENTVLSFLSKEFDVLVCTTIIETGMDIANANTMIIYDADKMGLSQLYQLRGRVGRSN 923
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
K+ +AYL Y ++S+ + +RL A++E E G GF++A +D+ IRG G + G QQ G +
Sbjct: 924 KQGYAYLMYERNKVISEVSEKRLKAIKEFTEFGSGFKVAMRDLEIRGAGDVMGSQQHGHM 983
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE- 517
+G +L+ +ML E++ K+ V V V+ID+ +N +PS YI +EM +
Sbjct: 984 EVIGYELYVKMLNEAIRKIKGDPVEEVL--DVEIDLTVNAYIPSSYIEDEVTKLEMYKKI 1041
Query: 518 AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGM 577
A +++D++ + E L ++ P + LL Y++ + + I KI +G M+ +
Sbjct: 1042 AAIDSKEDMYDIQ---EELEDRFSDIPKETQTLLNIAYIKSLCKTLKINKIKQTGDMIDL 1098
Query: 578 KT 579
++
Sbjct: 1099 ES 1100
>gi|256003231|ref|ZP_05428223.1| transcription-repair coupling factor [Clostridium thermocellum DSM
2360]
gi|385777600|ref|YP_005686765.1| transcription-repair coupling factor [Clostridium thermocellum DSM
1313]
gi|419722853|ref|ZP_14249990.1| transcription-repair coupling factor [Clostridium thermocellum AD2]
gi|419726353|ref|ZP_14253376.1| transcription-repair coupling factor [Clostridium thermocellum YS]
gi|255992922|gb|EEU03012.1| transcription-repair coupling factor [Clostridium thermocellum DSM
2360]
gi|316939280|gb|ADU73314.1| transcription-repair coupling factor [Clostridium thermocellum DSM
1313]
gi|380770405|gb|EIC04302.1| transcription-repair coupling factor [Clostridium thermocellum YS]
gi|380781233|gb|EIC10894.1| transcription-repair coupling factor [Clostridium thermocellum AD2]
Length = 1178
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 237/606 (39%), Positives = 374/606 (61%), Gaps = 19/606 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K P+ LSKL T W + + + K +++++ +L+ LY R + + K+ +
Sbjct: 566 SEGKTPK-LSKLGGTD-WAKTRARTKESLKELAQELINLYAQREMAEGHAFGKDTVWQKQ 623
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY+ T DQ + +++RD+ E PMDRL+CGDVG+GKTEVA+RA+F V GKQ
Sbjct: 624 FEDLFPYQETEDQLRCIEEIKRDM-ESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMDGKQ 682
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT VLA+QH++ ER +P I V +LSRF+++AE++ L +K G +++++GT
Sbjct: 683 VAYLVPTTVLAQQHYNTFKERMKDFP-ITVEVLSRFRTQAEQKRILKDVKAGMVDVLIGT 741
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V + +LGLLV+DEEQRFGV KEKI K ++DVLTL+ATPIPRTL+++L G
Sbjct: 742 HRLLQKDVCFKDLGLLVIDEEQRFGVTHKEKIKQMKTNIDVLTLTATPIPRTLHMSLVGI 801
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S I PP ER P++T++ ++ E V AI E+ RGGQVFY+ R++ + + +Q
Sbjct: 802 RDISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNRVRAINQKAAEIQ 861
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P +AIAHGQ +LE M +F G IL+CT I+ESGLD+ N NTIIV+D +
Sbjct: 862 KLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVEDADK 921
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GLAQLYQLRGRVGR+++ A+AY+ Y +LS+ A +RL A++E E G GF++A +D+
Sbjct: 922 MGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAMRDL 981
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
+RG G + G QQ G + +VG D++ ++L E+++++ ++ + + ID+N++ +
Sbjct: 982 QLRGAGNLLGPQQHGHIDSVGYDMYCKLLAEAVNEL-RGIPVTKEDEEISIDVNVSAYID 1040
Query: 502 SEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
++YI ++M + A EQD+ + + L +YG+ P ++ LL+ Y++ +A
Sbjct: 1041 NDYIGDENQKIDMYKKIASINDEQDV---IDAEDELMDRYGEIPQPVKNLLQIAYIKSLA 1097
Query: 561 ADIGITKIYASGKMV----GMKTNMNKKVFKMMIDS-----MTSEVHRNSLTFEGDQIKA 611
G + + V N+N +V ++D + + +R +TF+ +K
Sbjct: 1098 KACGFSSVQEKNDTVIFQYSESKNINFEVLGKLMDKYRRKLLFTASNRPYITFKTTGVKG 1157
Query: 612 ELLLEL 617
E LLE+
Sbjct: 1158 EELLEI 1163
>gi|299820651|ref|ZP_07052540.1| transcription-repair coupling factor [Listeria grayi DSM 20601]
gi|299817672|gb|EFI84907.1| transcription-repair coupling factor [Listeria grayi DSM 20601]
Length = 1186
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 247/618 (39%), Positives = 373/618 (60%), Gaps = 26/618 (4%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR L KL T W+R K+K K ++Q + DL++LY R +K + P + E
Sbjct: 566 SEGKAPR-LHKLGGT-EWKRVKSKVKASVQDIADDLIKLYAEREAEKGYAFTPDSEMQRE 623
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 624 FEDAFPYQETDDQIRSIKEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQ 682
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P I+VGLLSRF++K ++ E L+ +K G ++I+VGT
Sbjct: 683 VAFLVPTTILAQQHYETMKERFQGFP-IEVGLLSRFRTKKQQNETLEGLKKGTVDIVVGT 741
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY++LG LVVDEEQRFGV KEKI + + +DVLTL+ATPIPRTL++++ G
Sbjct: 742 HRLLSKDVVYSDLGFLVVDEEQRFGVTHKEKIKTIRAKIDVLTLTATPIPRTLHMSMLGV 801
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T+++ + + AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 802 RDLSVIETPPANRFPVQTYVAERNNVMIREAIERELAREGQVYYLYNRVESIVQKADEIS 861
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 862 ALVPDARVAFAHGQMTETELESVIVSFLEGEYDVLVTTTIIETGVDIPNVNTLFVQDADR 921
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L ++A +RL A++E ELG GF++A +D+
Sbjct: 922 MGLSQLYQLRGRVGRSNRIAYAYFMYQKDKVLREEAEKRLQAIKEFTELGSGFKIAMRDL 981
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPR 499
IRG G I G QQ G + +VG DL+ +ML E++ + E VP +V+ID+ ++
Sbjct: 982 SIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEARQPSEERKERVP--TVEIDLELDAY 1039
Query: 500 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 559
+P YI+ +EM E+D L + L ++G P +E L+ ++
Sbjct: 1040 IPEYYISDGRQKIEMYKRFRSITERD--ELEELQADLIDRFGDYPDEVEYLVTITELKIA 1097
Query: 560 AADIGITKIYASGKMV-------GMKTNMNKKVFKMMIDSMTSEVHRN-SLTFEGDQIKA 611
A +G+ + K V G + KV + + SE RN + EG ++K
Sbjct: 1098 ALIVGVESVKQEPKKVTILLSDKGTQQIQGDKVMQTI-----SEYGRNVGIGMEGTRLK- 1151
Query: 612 ELLLELPREQLLNWIFQC 629
L + + R+Q W+ Q
Sbjct: 1152 -LTMNIQRKQQKEWLEQL 1168
>gi|449115642|ref|ZP_21752102.1| transcription-repair coupling factor [Treponema denticola H-22]
gi|448955128|gb|EMB35895.1| transcription-repair coupling factor [Treponema denticola H-22]
Length = 1155
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 229/520 (44%), Positives = 337/520 (64%), Gaps = 15/520 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQK 95
+ +WE RK K K +++ + L++LY R + K+ F A FPYE T DQ
Sbjct: 562 SKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQKDDEWQTAFEAAFPYEETDDQL 621
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
+V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F V +GKQ L+PT +L +QH
Sbjct: 622 TCIAEVKEDM-EKPVPMDRLICGDVGYGKTEVAMRAAFKAVMSGKQVAFLSPTTILTEQH 680
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
F+ + +RF +P +K+ LSRF K E+++ L+ +K G ++I++GTH ++ VV+ +LG
Sbjct: 681 FETLDKRFKNFP-VKLARLSRFVPKGEQKKVLEKLKKGEVDILIGTHRIIQKDVVFKDLG 739
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
L++VDEEQRFGVK KEK+ K +VD L+LSATPIPRTL+++L RD S+I+TPP R
Sbjct: 740 LMIVDEEQRFGVKDKEKLKQMKHNVDCLSLSATPIPRTLHMSLLKIRDMSVIATPPQNRK 799
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P++T ++ F+ EKV I+ E +RGGQVFY+ R++ L+E + LQ P + I AHGQ
Sbjct: 800 PVETVIAEFNAEKVAEVIRRESERGGQVFYLHNRVESLDETLFMLQSLLPEIMIETAHGQ 859
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
QLEE E+F+ G ++LI T I+E+G+DI NANTII+ +G++QLYQLRGRVG
Sbjct: 860 MSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTIIIDRADMYGVSQLYQLRGRVG 919
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+DK+A+AYL YPD LS+ A++RL + + ELG GF++A KDM IRG G + G +Q+
Sbjct: 920 RSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLLGREQS 979
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ---IDININPRLPSEYINHLENPM 512
GD+ +VG DL+ +L E++ K+ Y+ VQ I++ + +P YI+ E M
Sbjct: 980 GDIYSVGFDLYLRLLDEAVQKLQNQ-----DYEPVQESVIELEYSGFIPDSYISSPETKM 1034
Query: 513 EMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
E+ + A + D+ + ++E L R +G P +E LL
Sbjct: 1035 EVYKKIAAVKVQGDLDRV--YSEILDR-FGPAPSEVESLL 1071
>gi|379794974|ref|YP_005324972.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356871964|emb|CCE58303.1| Transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus MSHR1132]
Length = 1168
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/564 (40%), Positives = 357/564 (63%), Gaps = 17/564 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y P
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKER--EMAEGYQFGPDT 605
Query: 80 AE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136
AE F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 606 AEQTTFELDFPYELTPDQAKSIDEIKEDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAV 664
Query: 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 196
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++
Sbjct: 665 MEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVD 723
Query: 197 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 256
I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++
Sbjct: 724 IVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHM 783
Query: 257 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 316
++ G RD S+I TPP R P++T++ + + A++ EL RGGQVFY+ +++ + E
Sbjct: 784 SMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRGGQVFYLYNKVQSIYEK 843
Query: 317 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 376
+ LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+
Sbjct: 844 REQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLII 903
Query: 377 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 436
+D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++
Sbjct: 904 EDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKI 963
Query: 437 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP---YKSVQID 493
A +D+ IRG G + G+QQ G + VG DL+ +ML E+ V+E I P V++D
Sbjct: 964 AMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEA---VNEKRGIKEPEPDVPEVEVD 1020
Query: 494 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553
+N++ LP+EYI + + +E+ + K + +M + L ++ P +E LL
Sbjct: 1021 LNLDAYLPTEYITNEQAKIEIYKKLRKTETHE--QIMDIKDELIDRFNDYPVEVERLLDI 1078
Query: 554 LYVRRMAADIGITKIYASGKMVGM 577
+ ++ A GIT I GK + +
Sbjct: 1079 VEIKVHALHAGITLIKDKGKTIDI 1102
>gi|449107153|ref|ZP_21743811.1| transcription-repair coupling factor [Treponema denticola ASLM]
gi|451968850|ref|ZP_21922079.1| transcription-repair coupling factor [Treponema denticola US-Trep]
gi|448963191|gb|EMB43872.1| transcription-repair coupling factor [Treponema denticola ASLM]
gi|451702303|gb|EMD56725.1| transcription-repair coupling factor [Treponema denticola US-Trep]
Length = 1155
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/520 (43%), Positives = 337/520 (64%), Gaps = 15/520 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQK 95
+ +WE RK K K +++ + L++LY R + K+ F A FPYE T DQ
Sbjct: 562 SKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQKDDEWQTAFEAAFPYEETDDQL 621
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
+V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F V +GKQ L+PT +L +QH
Sbjct: 622 TCIAEVKEDM-EKPVPMDRLICGDVGYGKTEVAMRAAFKAVMSGKQVAFLSPTTILTEQH 680
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
F+ + +RF +P +K+ LSRF K E+++ L+ +K G ++I++GTH ++ VV+ +LG
Sbjct: 681 FETLDKRFKNFP-VKLARLSRFVPKGEQKKVLEKLKKGEVDILIGTHRIIQKDVVFKDLG 739
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
L++VDEEQRFGVK KE++ K +VD L+LSATPIPRTL+++L RD S+I+TPP R
Sbjct: 740 LMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLHMSLLKIRDMSVIATPPQNRK 799
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P++T ++ F+ EKV I+ E +RGGQVFY+ R++ L+E + LQ P + I AHGQ
Sbjct: 800 PVETVIAEFNAEKVAEVIRRESERGGQVFYLHNRVESLDETLFMLQSLLPEIMIETAHGQ 859
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
QLEE E+F+ G ++LI T I+E+G+DI NANTII+ +G++QLYQLRGRVG
Sbjct: 860 MSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTIIIDRADMYGVSQLYQLRGRVG 919
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+DK+A+AYL YPD LS+ A++RL + + ELG GF++A KDM IRG G + G +Q+
Sbjct: 920 RSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLLGREQS 979
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ---IDININPRLPSEYINHLENPM 512
GD+ +VG DL+ +L E++ K+ Y+ VQ I++ + +P YI+ E M
Sbjct: 980 GDIYSVGFDLYLRLLDEAVQKLQNQ-----DYEPVQESVIELEYSGFIPDSYISSPETKM 1034
Query: 513 EMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
E+ + A + D+ + ++E L R +G P +E LL
Sbjct: 1035 EVYKKIAAVKVQGDLDRV--YSEILDR-FGPAPSEVESLL 1071
>gi|281418467|ref|ZP_06249486.1| transcription-repair coupling factor [Clostridium thermocellum JW20]
gi|281407551|gb|EFB37810.1| transcription-repair coupling factor [Clostridium thermocellum JW20]
Length = 1178
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 237/606 (39%), Positives = 374/606 (61%), Gaps = 19/606 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K P+ LSKL T W + + + K +++++ +L+ LY R + + K+ +
Sbjct: 566 SEGKTPK-LSKLGGTD-WAKTRARTKESLKELAQELINLYAQREMVEGHAFGKDTVWQKQ 623
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY+ T DQ + +++RD+ E PMDRL+CGDVG+GKTEVA+RA+F V GKQ
Sbjct: 624 FEDLFPYQETEDQLRCIEEIKRDM-ESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMDGKQ 682
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT VLA+QH++ ER +P I V +LSRF+++AE++ L +K G +++++GT
Sbjct: 683 VAYLVPTTVLAQQHYNTFKERMKDFP-ITVEVLSRFRTQAEQKRILKDVKAGMVDVLIGT 741
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V + +LGLLV+DEEQRFGV KEKI K ++DVLTL+ATPIPRTL+++L G
Sbjct: 742 HRLLQKDVCFKDLGLLVIDEEQRFGVTHKEKIKQMKTNIDVLTLTATPIPRTLHMSLVGI 801
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S I PP ER P++T++ ++ E V AI E+ RGGQVFY+ R++ + + +Q
Sbjct: 802 RDISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNRVRAINQKAAEIQ 861
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P +AIAHGQ +LE M +F G IL+CT I+ESGLD+ N NTIIV+D +
Sbjct: 862 KLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVEDADK 921
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GLAQLYQLRGRVGR+++ A+AY+ Y +LS+ A +RL A++E E G GF++A +D+
Sbjct: 922 MGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAMRDL 981
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
+RG G + G QQ G + +VG D++ ++L E+++++ ++ + + ID+N++ +
Sbjct: 982 QLRGAGNLLGPQQHGHIDSVGYDMYCKLLAEAVNEL-RGIPVTKEDEEISIDVNVSAYID 1040
Query: 502 SEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
++YI ++M + A EQD+ + + L +YG+ P ++ LL+ Y++ +A
Sbjct: 1041 NDYIGDENQKIDMYKKIASINDEQDV---IDAEDELMDRYGEIPQPVKNLLQIAYIKSLA 1097
Query: 561 ADIGITKIYASGKMV----GMKTNMNKKVFKMMIDS-----MTSEVHRNSLTFEGDQIKA 611
G + + V N+N +V ++D + + +R +TF+ +K
Sbjct: 1098 KACGFSSVQEKNDTVIFQYSESKNINFEVLGKLMDKYRRKLLFTASNRPYITFKTTGVKG 1157
Query: 612 ELLLEL 617
E LLE+
Sbjct: 1158 EELLEI 1163
>gi|449120309|ref|ZP_21756695.1| transcription-repair coupling factor [Treponema denticola H1-T]
gi|449122714|ref|ZP_21759047.1| transcription-repair coupling factor [Treponema denticola MYR-T]
gi|448947704|gb|EMB28548.1| transcription-repair coupling factor [Treponema denticola MYR-T]
gi|448948453|gb|EMB29290.1| transcription-repair coupling factor [Treponema denticola H1-T]
Length = 1155
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/520 (43%), Positives = 337/520 (64%), Gaps = 15/520 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQK 95
+ +WE RK K K +++ + L++LY R + K+ F A FPYE T DQ
Sbjct: 562 SKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQKDDEWQTAFEAAFPYEETDDQL 621
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
+V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F V +GKQ L+PT +L +QH
Sbjct: 622 TCIAEVKEDM-EKPVPMDRLICGDVGYGKTEVAMRAAFKAVMSGKQVAFLSPTTILTEQH 680
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
F+ + +RF +P +K+ LSRF K E+++ L+ +K G ++I++GTH ++ VV+ +LG
Sbjct: 681 FETLDKRFKNFP-VKLARLSRFVPKGEQKKVLEKLKKGEVDILIGTHRIIQKDVVFKDLG 739
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
L++VDEEQRFGVK KE++ K +VD L+LSATPIPRTL+++L RD S+I+TPP R
Sbjct: 740 LMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLHMSLLKIRDMSVIATPPQNRK 799
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P++T ++ F+ EKV I+ E +RGGQVFY+ R++ L+E + LQ P + I AHGQ
Sbjct: 800 PVETVIAEFNAEKVAEVIRRESERGGQVFYLHNRVESLDETLFMLQSLLPEIMIETAHGQ 859
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
QLEE E+F+ G ++LI T I+E+G+DI NANTII+ +G++QLYQLRGRVG
Sbjct: 860 MSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTIIIDRADMYGVSQLYQLRGRVG 919
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+DK+A+AYL YPD LS+ A++RL + + ELG GF++A KDM IRG G + G +Q+
Sbjct: 920 RSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLLGREQS 979
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ---IDININPRLPSEYINHLENPM 512
GD+ +VG DL+ +L E++ K+ Y+ VQ I++ + +P YI+ E M
Sbjct: 980 GDIYSVGFDLYLRLLDEAVQKLQNQ-----DYEPVQESVIELEYSGFIPDSYISSPETKM 1034
Query: 513 EMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
E+ + A + D+ + ++E L R +G P +E LL
Sbjct: 1035 EVYKKIAAVKVQGDLDRV--YSEILDR-FGPAPSEVESLL 1071
>gi|410669120|ref|YP_006921491.1| transcription-repair coupling factor [Thermacetogenium phaeum DSM
12270]
gi|409106867|gb|AFV12992.1| transcription-repair-coupling factor Mfd [Thermacetogenium phaeum DSM
12270]
Length = 1165
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 243/548 (44%), Positives = 340/548 (62%), Gaps = 11/548 (2%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA---EFAA 84
PR LS+L T W R K + K ++++ DL+ LY R + P Y +P EF
Sbjct: 563 PR-LSRLGGTD-WNRLKQRVKKRLRELAEDLIALYSER--SRTPGYAFSPDTVWQREFEE 618
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
FPYE TPDQ +A +V+ D+ E+ PMDRLICGDVGFGKTEVA+RA F V GKQ V
Sbjct: 619 LFPYEETPDQLQAIKEVKADM-EKPRPMDRLICGDVGFGKTEVAIRAAFKAVQDGKQVAV 677
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
L PT VLA+QH+ ERFS+YP I+V +LSRF++ AE++ + + G +++I+GTH L
Sbjct: 678 LVPTTVLAQQHYLTFKERFSRYP-IRVEMLSRFRTPAEQKAIVADLGKGLVDVIIGTHRL 736
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264
L + VV+ +LGLLV+DEEQRFGV KEKI K SVDVLT++ATPIPRTL ++L G RD
Sbjct: 737 LSADVVFKDLGLLVIDEEQRFGVAHKEKIKMLKTSVDVLTMTATPIPRTLQMSLGGVRDL 796
Query: 265 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 324
S+I TPP +RLP++T++ +S + V AI E+ RGGQVFYV R++ + +LQ+
Sbjct: 797 SVIETPPEDRLPVQTYVLEYSPDLVRDAILREIQRGGQVFYVHNRVETIARVAHYLQELV 856
Query: 325 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 384
P +AHGQ +LEE M +F LICT I+ESGLD NANT+IV++ FGL
Sbjct: 857 PEATFRVAHGQMREDELEEVMWEFLNRRFDCLICTTIIESGLDFPNANTLIVENADSFGL 916
Query: 385 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIR 444
AQLYQLRGRVGR+++ A+AY + +LS+QA +RL A++E E G GF+LA +D+ IR
Sbjct: 917 AQLYQLRGRVGRSNRLAYAYFTFRGDKVLSEQAEKRLRAIQEFTEFGSGFKLALRDLEIR 976
Query: 445 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEY 504
G G I G +Q G + VG DL+ +L E++ +V V D+ ++ LP Y
Sbjct: 977 GAGNILGPEQHGHMAAVGFDLYNRLLQEAVQEVKGKPVPERKAAPPLFDLRVDSYLPDSY 1036
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
I +E+ A +D + + E +R ++G+ P L VR A ++G
Sbjct: 1037 IGDPRQKVEIYRRL--ALAEDTAGVEELAEEVRDRFGEMPEPAVNLFDLARVRARARELG 1094
Query: 565 ITKIYASG 572
+ ++ +G
Sbjct: 1095 MREVQHAG 1102
>gi|449126025|ref|ZP_21762319.1| transcription-repair coupling factor [Treponema denticola OTK]
gi|448938739|gb|EMB19666.1| transcription-repair coupling factor [Treponema denticola OTK]
Length = 1155
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/520 (43%), Positives = 337/520 (64%), Gaps = 15/520 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQK 95
+ +WE RK K K +++ + L++LY R + K+ F A FPYE T DQ
Sbjct: 562 SKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQKDDEWQTAFEAAFPYEETDDQL 621
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
+V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F V +GKQ L+PT +L +QH
Sbjct: 622 TCIAEVKEDM-EKPVPMDRLICGDVGYGKTEVAMRAAFKAVMSGKQVAFLSPTTILTEQH 680
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
F+ + +RF +P +K+ LSRF K E+++ L+ +K G ++I++GTH ++ VV+ +LG
Sbjct: 681 FETLDKRFKNFP-VKLARLSRFVPKGEQKKVLEKLKKGEVDILIGTHRIIQKDVVFKDLG 739
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
L++VDEEQRFGVK KE++ K +VD L+LSATPIPRTL+++L RD S+I+TPP R
Sbjct: 740 LMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLHMSLLKIRDMSVIATPPQNRK 799
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P++T ++ F+ EKV I+ E +RGGQVFY+ R++ L+E + LQ P + I AHGQ
Sbjct: 800 PVETVIAEFNAEKVAEVIRRESERGGQVFYLHNRVESLDETLFMLQSLLPEIMIETAHGQ 859
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
QLEE E+F+ G ++LI T I+E+G+DI NANTII+ +G++QLYQLRGRVG
Sbjct: 860 MSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTIIIDRADMYGVSQLYQLRGRVG 919
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+DK+A+AYL YPD LS+ A++RL + + ELG GF++A KDM IRG G + G +Q+
Sbjct: 920 RSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLLGREQS 979
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ---IDININPRLPSEYINHLENPM 512
GD+ +VG DL+ +L E++ K+ Y+ VQ I++ + +P YI+ E M
Sbjct: 980 GDIYSVGFDLYLRLLDEAVQKLQNQ-----DYEPVQESVIELEYSGFIPDSYISSPETKM 1034
Query: 513 EMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
E+ + A + D+ + ++E L R +G P +E LL
Sbjct: 1035 EVYKKIAAVKVQGDLDRV--YSEILDR-FGPAPSEVESLL 1071
>gi|383790666|ref|YP_005475240.1| transcription-repair coupling factor Mfd [Spirochaeta africana DSM
8902]
gi|383107200|gb|AFG37533.1| transcription-repair coupling factor Mfd [Spirochaeta africana DSM
8902]
Length = 1134
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/532 (41%), Positives = 351/532 (65%), Gaps = 8/532 (1%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQFPYEPTPDQKKA 97
+WE RK+K + +++ + L++LY R + + +P + EF A FPYE T DQ +
Sbjct: 542 SWENRKSKVRRSVEDLAERLVQLYSRRKQARGYAFPPDTDWQLEFEASFPYEETLDQLRC 601
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157
+V+ D+ E+ +PMDRL+CGDVGFGKTE+ALRA F V+AGKQ +LAPT +LA+QHF+
Sbjct: 602 IEEVKADM-EQPSPMDRLVCGDVGFGKTEIALRAAFKSVTAGKQVALLAPTTILAEQHFE 660
Query: 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217
+ ER +++P I+ G+LSRF + A++++ + +K G +++++GTH +L V + +LGL+
Sbjct: 661 NLEERLARFP-IRTGMLSRFVTPAQQKKVIAGLKSGEIDLVIGTHRILSRDVEFRDLGLI 719
Query: 218 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 277
VVDEEQRFGVK KE++ K +VD LTLSATPIPRTL+++L RD S++ TPP R+PI
Sbjct: 720 VVDEEQRFGVKHKERLKEMKTTVDSLTLSATPIPRTLHMSLLKIRDMSVLQTPPTNRMPI 779
Query: 278 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 337
+T + F ++ V +AI+ E++RGGQV+++ R++ LE F+++ P V + +AHGQ
Sbjct: 780 ETVIREFDEDIVAAAIRKEIERGGQVYFLHNRVETLEYVRKFIEKLVPEVMVDVAHGQMT 839
Query: 338 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 397
+ QLE+ M +F GA ++L+ T+I+E+G+DI N NTII+ FG++QLYQLRGRVGR+
Sbjct: 840 AHQLEDIMHRFIHGAFQVLVATSIIENGIDIPNVNTIIIDRADNFGISQLYQLRGRVGRS 899
Query: 398 DKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 457
D+ A+AYL YP+ LS+ A++RL + + ELG GF++A KD+ +RG G + G QQ+GD
Sbjct: 900 DRSAYAYLLYPEDRPLSEIAMKRLQVISDHTELGSGFKVAMKDLEVRGAGNLLGPQQSGD 959
Query: 458 VGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE 517
+ +VG DL+ +L E++ ++ + + V +++ +P EYI+ +PME +
Sbjct: 960 ILSVGFDLYLRLLDEAIRRLQSEGDY-IEDQEVYLELEYTGFIPDEYID---DPMEKMEV 1015
Query: 518 AEKAAEQDIWC-LMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+K A + L T L ++G P + LL +R + + I+ +
Sbjct: 1016 YKKIASINTDTELATVTTELEDRFGPLPDEVHSLLSLAEIRIICRRLHISSL 1067
>gi|449102846|ref|ZP_21739593.1| transcription-repair coupling factor [Treponema denticola AL-2]
gi|448965648|gb|EMB46309.1| transcription-repair coupling factor [Treponema denticola AL-2]
Length = 1155
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/520 (43%), Positives = 337/520 (64%), Gaps = 15/520 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQK 95
+ +WE RK K K +++ + L++LY R + K+ F A FPYE T DQ
Sbjct: 562 SKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQKDDEWQTAFEAAFPYEETDDQF 621
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
+V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F V +GKQ L+PT +L +QH
Sbjct: 622 TCIAEVKEDM-EKPVPMDRLICGDVGYGKTEVAMRAAFKAVMSGKQVAFLSPTTILTEQH 680
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
F+ + +RF +P +K+ LSRF K E+++ L+ +K G ++I++GTH ++ VV+ +LG
Sbjct: 681 FETLDKRFKNFP-VKLARLSRFVPKGEQKKVLEKLKKGEVDILIGTHRIIQKDVVFKDLG 739
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
L++VDEEQRFGVK KE++ K +VD L+LSATPIPRTL+++L RD S+I+TPP R
Sbjct: 740 LMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLHMSLLKIRDMSVIATPPQNRK 799
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P++T ++ F+ EKV I+ E +RGGQVFY+ R++ L+E + LQ P + I AHGQ
Sbjct: 800 PVETVIAEFNAEKVAEVIRRESERGGQVFYLHNRVESLDETLFMLQSLLPEIMIETAHGQ 859
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
QLEE E+F+ G ++LI T I+E+G+DI NANTII+ +G++QLYQLRGRVG
Sbjct: 860 MSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTIIIDRADMYGVSQLYQLRGRVG 919
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+DK+A+AYL YPD LS+ A++RL + + ELG GF++A KDM IRG G + G +Q+
Sbjct: 920 RSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLLGREQS 979
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ---IDININPRLPSEYINHLENPM 512
GD+ +VG DL+ +L E++ K+ Y+ VQ I++ + +P YI+ E M
Sbjct: 980 GDIYSVGFDLYLRLLDEAVQKLQNQ-----DYEPVQESVIELEYSGFIPDSYISSPETKM 1034
Query: 513 EMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
E+ + A + D+ + ++E L R +G P +E LL
Sbjct: 1035 EVYKKIAAVKVQGDLDRV--YSEILDR-FGPAPSEVESLL 1071
>gi|42526796|ref|NP_971894.1| transcription-repair coupling factor [Treponema denticola ATCC 35405]
gi|449112139|ref|ZP_21748694.1| transcription-repair coupling factor [Treponema denticola ATCC 33521]
gi|449113057|ref|ZP_21749572.1| transcription-repair coupling factor [Treponema denticola ATCC 35404]
gi|41817111|gb|AAS11805.1| transcription-repair coupling factor [Treponema denticola ATCC 35405]
gi|448956420|gb|EMB37181.1| transcription-repair coupling factor [Treponema denticola ATCC 33521]
gi|448960637|gb|EMB41346.1| transcription-repair coupling factor [Treponema denticola ATCC 35404]
Length = 1155
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/520 (43%), Positives = 337/520 (64%), Gaps = 15/520 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQK 95
+ +WE RK K K +++ + L++LY R + K+ F A FPYE T DQ
Sbjct: 562 SKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQKDDEWQTAFEAAFPYEETDDQL 621
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
+V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F V +GKQ L+PT +L +QH
Sbjct: 622 TCIAEVKEDM-EKPVPMDRLICGDVGYGKTEVAMRAAFKAVMSGKQVAFLSPTTILTEQH 680
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
F+ + +RF +P +K+ LSRF K E+++ L+ +K G ++I++GTH ++ VV+ +LG
Sbjct: 681 FETLDKRFKNFP-VKLARLSRFVPKGEQKKVLEKLKKGEVDILIGTHRIIQKDVVFKDLG 739
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
L++VDEEQRFGVK KE++ K +VD L+LSATPIPRTL+++L RD S+I+TPP R
Sbjct: 740 LMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLHMSLLKIRDMSVIATPPQNRK 799
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P++T ++ F+ EKV I+ E +RGGQVFY+ R++ L+E + LQ P + I AHGQ
Sbjct: 800 PVETVIAEFNAEKVAEVIRRESERGGQVFYLHNRVESLDETLFMLQSLLPEIMIETAHGQ 859
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
QLEE E+F+ G ++LI T I+E+G+DI NANTII+ +G++QLYQLRGRVG
Sbjct: 860 MSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTIIIDRADMYGVSQLYQLRGRVG 919
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+DK+A+AYL YPD LS+ A++RL + + ELG GF++A KDM IRG G + G +Q+
Sbjct: 920 RSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLLGREQS 979
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ---IDININPRLPSEYINHLENPM 512
GD+ +VG DL+ +L E++ K+ Y+ VQ I++ + +P YI+ E M
Sbjct: 980 GDIYSVGFDLYLRLLDEAVQKLKNQ-----DYEPVQESVIELEYSGFIPDSYISSPETKM 1034
Query: 513 EMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
E+ + A + D+ + ++E L R +G P +E LL
Sbjct: 1035 EVYKKIAAVKVQGDLDRV--YSEILDR-FGPAPSEVESLL 1071
>gi|167039252|ref|YP_001662237.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514]
gi|300913892|ref|ZP_07131209.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561]
gi|307725423|ref|YP_003905174.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513]
gi|166853492|gb|ABY91901.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514]
gi|300890577|gb|EFK85722.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561]
gi|307582484|gb|ADN55883.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513]
Length = 1165
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 236/563 (41%), Positives = 355/563 (63%), Gaps = 15/563 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFA 83
T P L+KL + W + K K K A++ + DL++LY R K + P P EF
Sbjct: 560 TDNPPKLNKLG-GSEWLKAKRKAKKAVEDLAKDLIQLYAKRQMVKGHAFSPDTPWQKEFE 618
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
QFPYE T DQ + +++ D+ E++ PMDRL+CGDVG+GKTEVALRA F V+ GKQ
Sbjct: 619 EQFPYEETEDQLRCIKEIKEDM-EKDRPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVA 677
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
L PT +LA QH+ ERF ++P +K+ +LSRF++ E+ + + + G+++IIVGTH
Sbjct: 678 FLCPTTILAYQHYANFIERFKEFP-VKIEMLSRFRTPKEQSKIIKELAEGNIDIIVGTHR 736
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LL + + + +LGLL++DEEQRFGV KEKI K ++DVLTLSATPIPRTL+++L G RD
Sbjct: 737 LLQNDIKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLIGIRD 796
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S++ PP +R P++T++ F++E + AI E+ RGGQV++V R+ G+E+ F++
Sbjct: 797 MSVLENPPEDRFPVETYVVEFNEELIKDAILREIARGGQVYFVYNRVNGIEKMASFVKDL 856
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
PG +A+AHGQ QLE+ M F G +L+ T I+E+GLDI N NTIIV D + G
Sbjct: 857 VPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLG 916
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E E G GF++A +D+ I
Sbjct: 917 LSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMRDLEI 976
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININPRLP 501
RG G + G +Q G + +G DL+ ++L E++ + P + + IDI +N +
Sbjct: 977 RGAGNLLGAEQHGHIDAIGYDLYLKLLEEAIRNLKGEA----PKEEITTTIDIKVNAYID 1032
Query: 502 SEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
S YI +EM + A + +D +++ +E L ++G P +E LL+ Y++ +A
Sbjct: 1033 SSYIEDENLRLEMYKKIASIKSRED---MIEISEELVDRFGDYPKPVEALLEIAYLKAIA 1089
Query: 561 ADIGITKIYASGKMVGMKTN-MN 582
+ + IT+I G V +K N MN
Sbjct: 1090 SQVNITEITEKGNSVILKFNDMN 1112
>gi|384097630|ref|ZP_09998750.1| transcription-repair coupling factor [Imtechella halotolerans K1]
gi|383836512|gb|EID75919.1| transcription-repair coupling factor [Imtechella halotolerans K1]
Length = 1128
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/561 (40%), Positives = 340/561 (60%), Gaps = 16/561 (2%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQ 85
+P + KL + AW+ K K K ++++ +L+ LY R +K + P + E A
Sbjct: 503 KPPKIYKLG-SNAWKALKQKTKTRVKEIAFNLINLYAKRKTEKGYAFGPDSYLQNELEAS 561
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ KA +DV+ D+ E + PMDRL+CGDVGFGKTEVA+RA F V GKQ +L
Sbjct: 562 FLYEDTPDQSKATIDVKADM-ELDRPMDRLVCGDVGFGKTEVAVRAAFKAVDNGKQVAIL 620
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA QHF ER +P + V L+RF++ EK E LD + G ++II+GTH L
Sbjct: 621 VPTTILAFQHFKTFRERLKDFP-VNVEYLNRFRTAKEKRETLDRLAEGKVDIIIGTHQLA 679
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
G +V++ +LGLL+VDEEQ+FGV K+K+ S K ++DVLTL+ATPIPRTL +L RD S
Sbjct: 680 GEKVIFKDLGLLIVDEEQKFGVAVKDKLKSLKENIDVLTLTATPIPRTLQFSLMAARDLS 739
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+TPPP R PI++ + FS+E + A+ YE+ RGGQVF++ R++ ++E +Q+ P
Sbjct: 740 VITTPPPNRYPIESQVIRFSEELIRDAVSYEIQRGGQVFFIHNRVENIKEVAGMIQRLVP 799
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
I I HGQ ++LE+ M F +G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 800 DAKIGIGHGQMDGKKLEQLMLAFMEGHFDVLVATTIIESGLDVPNANTIFINNANNFGLS 859
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P S ++D A +R+ ALE+ +LG GF +A KD+ IRG
Sbjct: 860 DLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKRIQALEQFSDLGSGFNIAMKDLEIRG 919
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS---------VPYKSVQIDINI 496
G + G +Q+G + +G D + ++L E++ ++ E+ V K Q+D +
Sbjct: 920 AGDLLGGEQSGFINEIGFDTYQKILQEAIEELKENEFADLYPTSETDKVYLKDTQLDSDF 979
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
P Y+N + + + NE +D L + L ++G P LL + +
Sbjct: 980 QLLFPDNYVNSVTERLNLYNELSTLTNED--ELQAYEARLIDRFGALPDEASDLLNSVRI 1037
Query: 557 RRMAADIGITKI-YASGKMVG 576
+ +A +G+ +I GKM+G
Sbjct: 1038 KWIATKMGLERIVLKQGKMIG 1058
>gi|449128371|ref|ZP_21764617.1| transcription-repair coupling factor [Treponema denticola SP33]
gi|448940779|gb|EMB21683.1| transcription-repair coupling factor [Treponema denticola SP33]
Length = 1155
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/520 (43%), Positives = 337/520 (64%), Gaps = 15/520 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQK 95
+ +WE RK K K +++ + L++LY R + K+ F A FPYE T DQ
Sbjct: 562 SKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQKDDEWQTAFEAAFPYEETDDQL 621
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
+V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F V +GKQ L+PT +L +QH
Sbjct: 622 TCIAEVKEDM-EKPVPMDRLICGDVGYGKTEVAMRAAFKAVMSGKQVAFLSPTTILTEQH 680
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
F+ + +RF +P +K+ LSRF K E+++ L+ +K G ++I++GTH ++ VV+ +LG
Sbjct: 681 FETLDKRFKNFP-VKLARLSRFVPKGEQKKVLEKLKKGEVDILIGTHRIIQKDVVFKDLG 739
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
L++VDEEQRFGVK KE++ K +VD L+LSATPIPRTL+++L RD S+I+TPP R
Sbjct: 740 LMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLHMSLLKIRDMSVIATPPQNRK 799
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P++T ++ F+ EKV I+ E +RGGQVFY+ R++ L+E + LQ P + I AHGQ
Sbjct: 800 PVETVIAEFNAEKVAQVIRRESERGGQVFYLHNRVESLDETLFMLQSLLPEIMIETAHGQ 859
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
QLEE E+F+ G ++LI T I+E+G+DI NANTII+ +G++QLYQLRGRVG
Sbjct: 860 MSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTIIIDRADMYGVSQLYQLRGRVG 919
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+DK+A+AYL YPD LS+ A++RL + + ELG GF++A KDM IRG G + G +Q+
Sbjct: 920 RSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLLGREQS 979
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ---IDININPRLPSEYINHLENPM 512
GD+ +VG DL+ +L E++ K+ Y+ VQ I++ + +P YI+ E M
Sbjct: 980 GDIYSVGFDLYLRLLDEAVQKLQNQ-----DYEPVQESVIELEYSGFIPDSYISSPETKM 1034
Query: 513 EMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
E+ + A + D+ + ++E L R +G P +E LL
Sbjct: 1035 EVYKKIAAVKVQGDLDRV--YSEILDR-FGPAPSEVESLL 1071
>gi|449109630|ref|ZP_21746264.1| transcription-repair coupling factor [Treponema denticola ATCC 33520]
gi|448958873|gb|EMB39601.1| transcription-repair coupling factor [Treponema denticola ATCC 33520]
Length = 1155
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/520 (43%), Positives = 337/520 (64%), Gaps = 15/520 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQK 95
+ +WE RK K K +++ + L++LY R + K+ F A FPYE T DQ
Sbjct: 562 SKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQKDDEWQTAFEAAFPYEETDDQL 621
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
+V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F V +GKQ L+PT +L +QH
Sbjct: 622 TCIAEVKEDM-EKPVPMDRLICGDVGYGKTEVAMRAAFKAVMSGKQVAFLSPTTILTEQH 680
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
F+ + +RF +P +K+ LSRF K E+++ L+ +K G ++I++GTH ++ VV+ +LG
Sbjct: 681 FETLDKRFKNFP-VKLARLSRFVPKGEQKKVLEKLKKGEVDILIGTHRIIQKDVVFKDLG 739
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
L++VDEEQRFGVK KE++ K +VD L+LSATPIPRTL+++L RD S+I+TPP R
Sbjct: 740 LMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLHMSLLKIRDMSVIATPPQNRK 799
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P++T ++ F+ EKV I+ E +RGGQVFY+ R++ L+E + LQ P + I AHGQ
Sbjct: 800 PVETVIAEFNAEKVAEVIRRESERGGQVFYLHNRVESLDETLFMLQSLLPEIMIETAHGQ 859
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
QLEE E+F+ G ++LI T I+E+G+DI NANTII+ +G++QLYQLRGRVG
Sbjct: 860 MSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTIIIDRADMYGVSQLYQLRGRVG 919
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+DK+A+AYL YPD LS+ A++RL + + ELG GF++A KDM IRG G + G +Q+
Sbjct: 920 RSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLLGREQS 979
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ---IDININPRLPSEYINHLENPM 512
GD+ +VG DL+ +L E++ K+ Y+ VQ I++ + +P YI+ E M
Sbjct: 980 GDIYSVGFDLYLRLLDEAVQKLQNQ-----DYEPVQESVIELEYSGFIPDSYISSPETKM 1034
Query: 513 EMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
E+ + A + D+ + ++E L R +G P +E LL
Sbjct: 1035 EVYKKIAAVKVQGDLDRV--YSEILDR-FGPAPSEVESLL 1071
>gi|449131039|ref|ZP_21767256.1| transcription-repair coupling factor [Treponema denticola SP37]
gi|448940385|gb|EMB21291.1| transcription-repair coupling factor [Treponema denticola SP37]
Length = 1155
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 228/520 (43%), Positives = 337/520 (64%), Gaps = 15/520 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQK 95
+ +WE RK K K +++ + L++LY R + K+ F A FPYE T DQ
Sbjct: 562 SKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQKDDEWQTAFEAAFPYEETDDQL 621
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
+V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F V +GKQ L+PT +L +QH
Sbjct: 622 TCISEVKEDM-EKPVPMDRLICGDVGYGKTEVAMRAAFKAVMSGKQVAFLSPTTILTEQH 680
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
F+ + +RF +P +K+ LSRF K E+++ L+ +K G ++I++GTH ++ VV+ +LG
Sbjct: 681 FETLDKRFKNFP-VKLARLSRFVPKGEQKKVLEKLKKGEVDILIGTHRIIQKDVVFKDLG 739
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
L++VDEEQRFGVK KE++ K +VD L+LSATPIPRTL+++L RD S+I+TPP R
Sbjct: 740 LMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLHMSLLKIRDMSVIATPPQNRK 799
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P++T ++ F+ EKV I+ E +RGGQVFY+ R++ L+E + LQ P + I AHGQ
Sbjct: 800 PVETVIAEFNAEKVAEVIRRESERGGQVFYLHNRVESLDETLFMLQSLLPEIMIETAHGQ 859
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
QLEE E+F+ G ++LI T I+E+G+DI NANTII+ +G++QLYQLRGRVG
Sbjct: 860 MSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTIIIDRADMYGVSQLYQLRGRVG 919
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+DK+A+AYL YPD LS+ A++RL + + ELG GF++A KDM IRG G + G +Q+
Sbjct: 920 RSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLLGREQS 979
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ---IDININPRLPSEYINHLENPM 512
GD+ +VG DL+ +L E++ K+ Y+ VQ I++ + +P YI+ E M
Sbjct: 980 GDIYSVGFDLYLRLLDEAVQKLQNQ-----DYEPVQESVIELEYSGFIPDSYISSPETKM 1034
Query: 513 EMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
E+ + A + D+ + ++E L R +G P +E LL
Sbjct: 1035 EVYKKIAAVKVQGDLDRV--YSEILDR-FGPAPSEVESLL 1071
>gi|451816997|ref|YP_007453198.1| transcription-repair-coupling factor Mfd [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451782976|gb|AGF53944.1| transcription-repair-coupling factor Mfd [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 1166
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 235/580 (40%), Positives = 361/580 (62%), Gaps = 13/580 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K P+ ++KL + W++ K K + +I ++ DL++LY R K + K+ +
Sbjct: 560 SEGKAPK-VNKLG-SAEWQKAKAKARKSINEIAEDLVKLYAMRSTVKGHKFSKDTEWQKQ 617
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F +FP+E TPDQ + +++ D+ E E PMDRL+CGDVG+GKTEVALRA F V GKQ
Sbjct: 618 FEDEFPFEETPDQLTSIEEIKLDM-ESEKPMDRLVCGDVGYGKTEVALRAAFKAVMDGKQ 676
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH+ + RFS +P IK+ ++SRF++ +++E L +K G+L+I++GT
Sbjct: 677 VAILVPTTILAEQHYKNIKNRFSDFP-IKIDMISRFKTTKQQKETLQKVKEGNLDILIGT 735
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H L+ + + +LGLL+VDEEQRFGVKQKEKI K +VDVLTLSATPIPRTL+++L+G
Sbjct: 736 HRLVSKDIQFKDLGLLIVDEEQRFGVKQKEKIKGIKKNVDVLTLSATPIPRTLHMSLSGV 795
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP ER PI+T++ + + + AI E+ R GQV++V R++ +E ++Q
Sbjct: 796 RDISVIETPPEERYPIQTYVVEQNDQLIRDAILREIGRNGQVYFVYNRVEDIERMAKYVQ 855
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + +AHGQ RQLE M F G +L+CT I+E+G+DIQN NTII+ D +
Sbjct: 856 ALVPESKVGVAHGQMAERQLENVMIDFMSGEYNVLVCTTIIETGMDIQNVNTIIIYDADK 915
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AYL Y +L++ A +RL AL++ ELG GF++A +D+
Sbjct: 916 MGLSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALKDFTELGSGFKIAMRDL 975
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G Q G + ++G DL+ ML E K+ + + P ++ +DI ++ +P
Sbjct: 976 EIRGAGNMMGSSQHGHMASIGYDLYCRML-EDTVKLIKGEIQKEPIETT-LDIKVDAFIP 1033
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI +E+ + A + + E L +Y K P + L+ Y++ A
Sbjct: 1034 ESYIEDEIQKIEIYKKI--AVIEGLEDYNDIKEELEDRYSKIPEPVYNLMDIAYIKSQAK 1091
Query: 562 DIGITKIYASGKMVGMKTNMN----KKVFKMMIDSMTSEV 597
I I +I + K + K N K +FK++++ + V
Sbjct: 1092 SIFIEEIKETPKEMLFKFAENESDYKNIFKILMEKYKNSV 1131
>gi|253681221|ref|ZP_04862019.1| transcription-repair coupling factor [Clostridium botulinum D str.
1873]
gi|253562459|gb|EES91910.1| transcription-repair coupling factor [Clostridium botulinum D str.
1873]
Length = 1169
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 237/619 (38%), Positives = 383/619 (61%), Gaps = 27/619 (4%)
Query: 4 YLCNSCTCGSIMFC--------YDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMV 55
YL S T G ++ + +E K P+ ++KL + W + KTK K AI ++
Sbjct: 532 YLELSYTAGDTLYVPVEQLDLVQKYIGSEGKSPK-VNKLG-GSEWIKAKTKVKKAINEIA 589
Query: 56 VDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDR 114
+L++LY R K + K+ +F +FPY+ TPDQ A +++ D+ E MDR
Sbjct: 590 EELVKLYAIRSTLKGHKFNKDTIWQKQFEEEFPYDETPDQLTAIQEIKSDM-ESGKAMDR 648
Query: 115 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 174
L+CGDVG+GKTEVA+RA F V GKQ L PT +LA+QH+ + +RF +P + + ++
Sbjct: 649 LLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAEQHYTNLIQRFCDFP-VNIEMI 707
Query: 175 SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIA 234
SRF++ A+ + L+ ++ G+++I++GTH +L V + +LGLL+VDEEQRFGV KEKI
Sbjct: 708 SRFKTSAQVKSILNEVRVGNVDILIGTHRILQKDVEFKDLGLLIVDEEQRFGVTHKEKIK 767
Query: 235 SFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK 294
+ K +VDVLTL+ATPIPRTL+++LTG RD S+I TPP ER P++T++ F+ + + AI
Sbjct: 768 NLKKNVDVLTLTATPIPRTLHMSLTGIRDISVIETPPEERYPVQTYVVEFNDQLIEDAIS 827
Query: 295 YELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIK 354
ELDR GQV++V R+ ++E +L + FP I IAHGQ R+LE+ M F +
Sbjct: 828 RELDRDGQVYFVYNRVGSIKEMAAYLAKMFPNSKIGIAHGQMPERELEKVMYDFMRKEYD 887
Query: 355 ILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLS 414
IL+CT I+E+GLDIQNANT+I+ D +FGL+QLYQLRGRVGR+++ A+AYL Y +L+
Sbjct: 888 ILVCTTIIETGLDIQNANTMIIYDADRFGLSQLYQLRGRVGRSNRMAYAYLTYKKDKVLT 947
Query: 415 DQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL 474
+ A +RL A+++ ELG GF++A +D+ IRG G + G Q G + +VG DL+ ML +++
Sbjct: 948 EVAEKRLKAIKDFTELGSGFKIAMRDLEIRGAGNLIGAAQHGHMASVGYDLYCRMLEDTI 1007
Query: 475 ----SKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCL 529
++D+ + +D+ ++ +PS YI +E+ + A +EQ +
Sbjct: 1008 KLVRGEIDKEPI------ETTVDLKVDAYIPSNYIKDEVQKIEVYKKIANIDSEQ---GM 1058
Query: 530 MQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMM 589
M+ E L ++ P+S++ L+ Y++ +A +G+ ++ V +K + + + + +
Sbjct: 1059 MEIREELEDRFSDIPFSVDNLINIAYIKTIANKLGVIEVKEKLTEVIIKFSNKEYINQNL 1118
Query: 590 IDSMTSEVHRNSLTFEGDQ 608
+ ++ S+ +N + GD+
Sbjct: 1119 VKAIISKYSKNVMFKLGDE 1137
>gi|297545520|ref|YP_003677822.1| transcription-repair coupling factor [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296843295|gb|ADH61811.1| transcription-repair coupling factor [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 1163
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/580 (41%), Positives = 359/580 (61%), Gaps = 14/580 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFA 83
T P L+KL + W + K K K A++ + DL++LY R K + P P EF
Sbjct: 560 TDNPPKLNKLG-GSEWLKAKRKAKKAVEDLAKDLLQLYAKRQIAKGHAFSPDTPWQREFE 618
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
QFPYE T DQ + +++ D+ E++ PMDRL+CGDVG+GKTEVALRA F V+ GKQ
Sbjct: 619 EQFPYEETEDQLRCIKEIKEDM-EKDKPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVA 677
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
L PT +LA QH+ ERF ++P +K+ +LSRF++ E+ + + + G ++IIVGTH
Sbjct: 678 FLCPTTILAYQHYTNFMERFKEFP-VKIEMLSRFRTPKEQAQIIKGLAEGTIDIIVGTHR 736
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LL + V + +LGLL++DEEQRFGV KEKI K ++DVLTLSATPIPRTL+++L G RD
Sbjct: 737 LLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLIGIRD 796
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S++ PP +R P++T++ F++E + AI E+ RGGQV++V R+ G+E+ ++
Sbjct: 797 MSVLENPPEDRFPVETYVVEFNEELIKDAILREIGRGGQVYFVYNRVNGIEKMASLVKDL 856
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
PG +A+AHGQ QLE+ M F G +L+ T I+E+GLDI N NTIIV D + G
Sbjct: 857 VPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLG 916
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E E G GF++A +D+ I
Sbjct: 917 LSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMRDLEI 976
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININPRLP 501
RG G + G +Q G +G +G DL+ ++L E++ + P + + IDI +N +
Sbjct: 977 RGAGNLLGAEQHGHIGAIGYDLYLKLLEEAIRNLKGEA----PKEEITTTIDIKVNAYID 1032
Query: 502 SEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
S YI + +EM + A + +D +++ +E L ++G P +E LL+ Y++ +A
Sbjct: 1033 SSYIEDENSRLEMYKKIASIESRED---MVEISEELVDRFGDYPKPVEALLEIAYLKAIA 1089
Query: 561 ADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRN 600
+ IT+I G V +K + V +I+ + E N
Sbjct: 1090 SKANITEITEKGNTVILKFKNIESVKMEVIEKIIKEYGGN 1129
>gi|325954433|ref|YP_004238093.1| transcription-repair coupling factor [Weeksella virosa DSM 16922]
gi|323437051|gb|ADX67515.1| transcription-repair coupling factor [Weeksella virosa DSM 16922]
Length = 1114
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 233/574 (40%), Positives = 357/574 (62%), Gaps = 19/574 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
FR + P+ +SKL + AW K K K ++++ DL++LY R QK + P
Sbjct: 481 FRGKDGVEPK-ISKLG-SPAWRNLKNKTKTKVKEIAFDLIKLYAKRRTQKGFAFSPDTYL 538
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ+KA LDV+ D+ E E PMDRL+CGDVGFGKTEVA+RA F
Sbjct: 539 QNELEASFIYEDTPDQEKATLDVKNDM-ESERPMDRLVCGDVGFGKTEVAIRAAFKAAVD 597
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ VL PT +LA QHF ++R ++P +++ L+RF + +K L ++ G ++II
Sbjct: 598 GKQVAVLVPTTILAFQHFKTFTDRLKEFP-VQIEYLNRFTTTKKKNAILADLEAGKVDII 656
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH L+ +V + +LGLL++DEE +FGV K+K+ + + ++D LTL+ATPIPRTL +L
Sbjct: 657 IGTHQLVNPKVKFKDLGLLIIDEEHKFGVSVKDKLKTLRANIDTLTLTATPIPRTLQFSL 716
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
RD S+I TPPP R P++T+L F++E + AI YE+ RGGQ+F++ R++ L+E
Sbjct: 717 MAARDLSVIKTPPPNRQPVETNLIEFNEEAIRDAILYEMQRGGQIFFIHNRVQTLKEIAG 776
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+Q+ P IA HGQ +QLE M F G +LI T I+ESGLD+ NANTI++ D
Sbjct: 777 MVQRLVPDARIATGHGQMDGKQLEAIMLDFIDGQYDVLISTTIIESGLDVPNANTILIND 836
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q FGLA L+Q+RGRVGR++++A YL P S+L+++A +RL A+E+ +LG GF +A
Sbjct: 837 AQNFGLADLHQMRGRVGRSNRKAFCYLIAPPVSVLTNEARKRLQAIEQFSDLGSGFNIAM 896
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD--------EHCVIS--VPY- 487
KD+ IRG G + G +QTG + +G + + ++L E++ ++ EH S + Y
Sbjct: 897 KDLEIRGAGNLLGAEQTGFMMEIGFETYQKILNEAIEELKESDFKELFEHEKTSNFIEYV 956
Query: 488 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 547
K VQ+D ++ +P EY+N++E + + NE A+ + L +F +L ++G P +
Sbjct: 957 KDVQVDTDLEILIPDEYVNNVEERLALYNEL--ASIETAEELSKFENNLIDRFGPIPSPV 1014
Query: 548 EILLKKLYVRRMAADIGITKI-YASGKMVGMKTN 580
E LL+ + ++ ++G+ +I +GK+ N
Sbjct: 1015 ENLLQSIKLKWKGKELGMERIVLKNGKLTAYFVN 1048
>gi|404417269|ref|ZP_10999072.1| transcription-repair coupling factor [Staphylococcus arlettae CVD059]
gi|403490367|gb|EJY95909.1| transcription-repair coupling factor [Staphylococcus arlettae CVD059]
Length = 1170
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/559 (40%), Positives = 356/559 (63%), Gaps = 11/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E K P+ L+KL T W++ K K + +++ + +L+ LY R + Y P
Sbjct: 552 YVASEDKSPK-LNKLG-GTEWKKTKAKVQQSVEDIADELITLYKER--EMSVGYQYGPDT 607
Query: 80 AE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136
AE F FPY+ T DQ K+ ++++D+ E++ PMDRL+CGDVG+GKTEVA+RA F +
Sbjct: 608 AEQNDFELDFPYDLTADQAKSITEIKQDM-EQQRPMDRLLCGDVGYGKTEVAVRAAFKAI 666
Query: 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 196
GKQ L PT +LA+QH++ + ER +P I + L+SRF++ E +E + +K G ++
Sbjct: 667 YEGKQVAFLVPTTILAQQHYETLIERMQDFP-IDIELISRFRTTKEIKETKEGLKSGKVD 725
Query: 197 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 256
I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I S K +VDVLTL+ATPIPRTL++
Sbjct: 726 IVVGTHKLLGKDISYKDLGLLIVDEEQRFGVRHKERIKSLKTNVDVLTLTATPIPRTLHM 785
Query: 257 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 316
++ G RD S+I TPP R P++T++ + + A++ E+ R GQVFY+ +++ + E
Sbjct: 786 SMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALEREISREGQVFYLYNKVQSIYEK 845
Query: 317 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 376
+ LQ P +I +AHGQ R LEETM F +L+ T I+E+G+D+ NANT+I+
Sbjct: 846 REQLQMLLPDANIGVAHGQMTERDLEETMLGFINHEYDVLVTTTIIETGVDVPNANTLII 905
Query: 377 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 436
++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++
Sbjct: 906 EEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLTETAEERLQAIKEFTELGSGFKI 965
Query: 437 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI 496
A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ + V+I++NI
Sbjct: 966 AMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIQPETEEAPEVEIELNI 1025
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
+ LP+EYI + + +E+ + K + L+ + L ++ + P +E LL + +
Sbjct: 1026 DAYLPAEYIQNEQAKIEIYKKLRKIESE--AQLIDVKDELLDRFNEYPIEVERLLDMMEI 1083
Query: 557 RRMAADIGITKIYASGKMV 575
+ A +G+T I GK +
Sbjct: 1084 KVHALHVGVTSIKDKGKHI 1102
>gi|410656908|ref|YP_006909279.1| Transcription-repair coupling factor [Dehalobacter sp. DCA]
gi|410659946|ref|YP_006912317.1| Transcription-repair coupling factor [Dehalobacter sp. CF]
gi|409019263|gb|AFV01294.1| Transcription-repair coupling factor [Dehalobacter sp. DCA]
gi|409022302|gb|AFV04332.1| Transcription-repair coupling factor [Dehalobacter sp. CF]
Length = 1189
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/612 (38%), Positives = 372/612 (60%), Gaps = 10/612 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEF 82
E+ P+ L+KL + W + K + + A+++M ++L+ELY R YP++ EF
Sbjct: 566 ESSTPK-LNKL-NGNEWNKAKARAQGAVKEMAINLLELYAKREGAVGFAYPEDSHWQKEF 623
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
+FPYE TPDQ ++ ++V++D+ + PMDRL+CGDVG+GKTEVALRA F V +GKQ
Sbjct: 624 EDRFPYEETPDQLQSIMEVKKDMM-KSRPMDRLLCGDVGYGKTEVALRAAFKAVISGKQV 682
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
V+ PT +LA+QH++ ERF YP +K+ +LSRF++ E+++ + +K G L+I+VGTH
Sbjct: 683 AVMVPTTILAQQHYNTFRERFMDYP-VKIEMLSRFRTAKEQKQIIQSLKDGSLDIVVGTH 741
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V + +LGLLVVDEEQRFGV KE+I + K +VDVLTLSATPIPRTL+++L G R
Sbjct: 742 RLLSEGVSFKDLGLLVVDEEQRFGVAHKERIKTLKTNVDVLTLSATPIPRTLHMSLVGLR 801
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP +R P++T ++ F+ + V AI+ EL RGGQ F+V R++ L+ + L
Sbjct: 802 DMSVIMTPPEDRFPVQTFVAEFNADLVRDAIRRELYRGGQAFFVHNRVETLDRVVRLLNL 861
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P + HGQ QLE+ M F + ILICT I+E+GLD+ N NT+IV +F
Sbjct: 862 IIPEARCGVVHGQMSETQLEKEMISFLEKEKDILICTTIIETGLDMPNVNTLIVDGADKF 921
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR++++A+AY Y + +L+++A +RL + E E G GF++A +D+
Sbjct: 922 GLSQLYQLRGRVGRSNRKAYAYFLYQPQKILTEEAEKRLTTIREFTEFGSGFKIAMRDLE 981
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G G +Q G + ++G L+ +ML E++ ++ V V IDI + LP
Sbjct: 982 IRGAGNFIGGEQHGHLASIGFSLYVKMLKEAVQQLRGETVEEVAEPV--IDIQVKALLPD 1039
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
EYI + + + ++ L F + L ++G P +E L K + +R A
Sbjct: 1040 EYIVDKQIKATLYQRMLGISSEE--HLSDFLDELVDRFGNPPDEVENLAKIIRIRMKAKQ 1097
Query: 563 IGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQL 622
+G+ ++ + + ++ + ++ + S+ ++ G+Q EL L L R
Sbjct: 1098 LGLEQVVQHKQNISLRFAADPEISGEQLMSIAAKFPYPLSFAAGEQGNLELNLRL-RVSS 1156
Query: 623 LNWIFQCLAELY 634
+ IF+ + +L+
Sbjct: 1157 IEDIFKAIFKLF 1168
>gi|425738706|ref|ZP_18856963.1| transcription-repair coupling factor [Staphylococcus massiliensis
S46]
gi|425478977|gb|EKU46159.1| transcription-repair coupling factor [Staphylococcus massiliensis
S46]
Length = 1170
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 232/557 (41%), Positives = 348/557 (62%), Gaps = 14/557 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE- 81
+E K P+ L KL + W++ K K + +I+ + +L+E+Y R ++ Y P E
Sbjct: 555 SEDKTPK-LYKLG-GSEWKKTKAKAQSSIEDIADELLEIYKER--EQSVGYQFGPDTEEQ 610
Query: 82 --FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 139
F FPYE TPDQ K+ +++ D+ E PMDRL+CGDVG+GKTEVA+RA F V G
Sbjct: 611 QTFEMDFPYELTPDQDKSISEIKGDM-EVNKPMDRLLCGDVGYGKTEVAVRAAFKAVMEG 669
Query: 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 199
KQ L PT +LA+QH++ + ER S YP I + L+SRF++ E + + +K G ++I+V
Sbjct: 670 KQVAFLVPTTILAQQHYETLIERMSDYP-IDIELMSRFRTTKEVNQTKEGLKSGKVDIVV 728
Query: 200 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 259
GTH LLG V Y +LGLL+VDEEQRFGV+ KEKI + K +VDVLTL+ATPIPRTL++++
Sbjct: 729 GTHKLLGKSVQYKDLGLLIVDEEQRFGVRHKEKIKALKANVDVLTLTATPIPRTLHMSML 788
Query: 260 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 319
G RD S+I TPP R P++T++ + + A+ EL R GQVFY+ R++ + E +
Sbjct: 789 GVRDLSVIETPPENRFPVQTYVLEQNANFIKEALLRELSRDGQVFYLYNRVQSIYEKREQ 848
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
LQ P I +AHGQ R LEETM F G IL+ T I+E+G+D+ NANT+I+++
Sbjct: 849 LQMLVPDASIGVAHGQMTERDLEETMLDFINGDYDILVTTTIIETGVDVPNANTLIIEEA 908
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 439
+FGL+QLYQLRGRVGR+ + +AY +P +LS+ A ERL A++E ELG GF++A +
Sbjct: 909 DRFGLSQLYQLRGRVGRSSRIGYAYFLHPQNKVLSETAEERLQAIKEFTELGSGFKIAMR 968
Query: 440 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS-KVDEHCVISVPYKSVQIDININP 498
D+ IRG G + G+QQ G + +VG DL+ +ML E+++ K V P +++++N++
Sbjct: 969 DLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEVEETP--DIEMNLNLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP YI + + +E+ + + I L + L ++G+ P +E LL + ++
Sbjct: 1027 YLPGSYIKNEQAKIEIYKKLRTL--ESIEQLRDVKDELIDRFGEYPVEVERLLDSVEIKI 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I K +
Sbjct: 1085 HAVHSGVLTISDKNKSI 1101
>gi|374294799|ref|YP_005044990.1| transcription-repair coupling factor Mfd [Clostridium clariflavum DSM
19732]
gi|359824293|gb|AEV67066.1| transcription-repair coupling factor Mfd [Clostridium clariflavum DSM
19732]
Length = 1177
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 240/614 (39%), Positives = 371/614 (60%), Gaps = 12/614 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K P+ LSKL T W + K K K +I ++ +L++LY R K + K+ +
Sbjct: 569 SEGKTPK-LSKLGGTD-WLKTKAKTKESIMELAGELIKLYAMRESSKGHAFGKDTIWQKQ 626
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F QFPY+ T DQ + +++RD+ E + PMDRL+CGDVG+GKTEVA+RAIF V GKQ
Sbjct: 627 FEEQFPYQETEDQLRCIEEIKRDM-ESDKPMDRLLCGDVGYGKTEVAIRAIFKAVMDGKQ 685
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT VLA+QH++ ER +P +KV ++SRF++ AE++ L +K G +++++GT
Sbjct: 686 VAYLVPTTVLAQQHYNNFKERMKDFP-VKVEMVSRFRTPAEQKRILRDVKAGLVDVLIGT 744
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VV+ +LGLLV+DEEQRFGV KEK+ + +VDVLTL+ATPIPRTL+++L G
Sbjct: 745 HRLLQKDVVFKDLGLLVIDEEQRFGVMHKEKLKKLRANVDVLTLTATPIPRTLHMSLIGI 804
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
+D S I PP ER P++T++ +++E + AI E+ R GQVFY+ R++ + ++
Sbjct: 805 KDISTIEDPPEERYPVQTYVMEYNEEVIKEAINREMARNGQVFYLYNRVRSINVKAAEIK 864
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P IA+AHGQ +LE+ M +F G IL+CT I+ESG+D+ N NTIIV+D +
Sbjct: 865 KMVPDARIAVAHGQMDETELEDIMFRFINGEYDILVCTVIIESGIDMPNVNTIIVEDSDK 924
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY+ Y +LS+ A +RL A++E E G GF++A +DM
Sbjct: 925 MGLSQLYQLRGRVGRSNRMAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAMRDM 984
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG D++ +L E++S++ V V ID+N++ +
Sbjct: 985 QIRGAGNLLGAQQHGHIDSVGYDMYCRLLAEAISELKGQSVQEEV--EVSIDVNVSAYID 1042
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
S YI+ +EM + A+ QD ++ + L +YG P + L+K +++ +A
Sbjct: 1043 SSYISSENEKIEMYKKI--ASVQDEQDVLDVEDELMDRYGNIPTPVSNLMKIAHIKALAL 1100
Query: 562 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ--IKAELLLELPR 619
G + + + + ++ K + E HR L F + ++ R
Sbjct: 1101 KCGFSSVQEKNGSIIFQY-IDSKYVNFEVIGKIMEKHRRKLLFNASNKPYITYRITDIKR 1159
Query: 620 EQLLNWIFQCLAEL 633
E LL+ I L ++
Sbjct: 1160 ESLLDNITILLQDI 1173
>gi|408491198|ref|YP_006867567.1| transcription-repair coupling factor Mfd [Psychroflexus torquis ATCC
700755]
gi|408468473|gb|AFU68817.1| transcription-repair coupling factor Mfd [Psychroflexus torquis ATCC
700755]
Length = 1121
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/553 (40%), Positives = 338/553 (61%), Gaps = 17/553 (3%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQK 95
+ AW+ K K K ++K+ DL++LY R +K Y P + E A F YE TPDQ
Sbjct: 502 SKAWKSLKNKTKARVKKVAFDLIKLYAKRKLEKGFQYGPDSHLQHELEASFIYEDTPDQG 561
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
A DV+ D+ E+E PMDRL+CGDVGFGKTE+A+RA F V GKQ VL PT +LA QH
Sbjct: 562 IATQDVKSDM-EKEQPMDRLVCGDVGFGKTEIAIRAAFKAVDNGKQVAVLVPTTILAFQH 620
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
+ER S++P + V L+RF++ E+ L+ ++ G ++I++GTH L+ V + NLG
Sbjct: 621 HKTFTERLSEFP-VTVDYLNRFRTTKERRSVLEGLEDGSVDIVIGTHQLVSKAVKFKNLG 679
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL++DEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L RD S I TPPP R
Sbjct: 680 LLIIDEEQKFGVAVKDKLKTIKANVDTLTLTATPIPRTLQFSLMAARDLSTIKTPPPNRY 739
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
PI+TH+ FS++++ A+ YE++RGGQVF++ RI+ + E +Q+ P I I HGQ
Sbjct: 740 PIETHVIRFSEDQIRDAVSYEIERGGQVFFINNRIENINEVAGLIQRLVPDAKIGIGHGQ 799
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
++LE M +F +L+ T I+ESGLD+ NANTI + FG++ L+Q+RGRVG
Sbjct: 800 MEGKKLENLMLQFMNNEFDVLVSTTIIESGLDVTNANTIFINSANNFGMSDLHQMRGRVG 859
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A YL P ++++D A +RL+ALE+ +LG G +A KD+ IRG G + G +Q+
Sbjct: 860 RSNKKAFCYLITPPLTMMTDDAKKRLSALEQFSDLGSGINIAMKDLEIRGAGDLLGGEQS 919
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVP-----------YKSVQIDININPRLPSEY 504
G + ++G D + ++L E++ ++ E+ SV K QID + Y
Sbjct: 920 GFISDIGFDTYQKILNEAIQELKENEFKSVYDEENAEEDQVFVKDAQIDTDFEILFSDNY 979
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
IN ++ + + + ++D L F + L ++G P L+ + ++ +AA+IG
Sbjct: 980 INSIKERLNLYTKLNSIQDED--GLANFEKELIDRFGDLPKEARDLINSVRLKWIAANIG 1037
Query: 565 ITK-IYASGKMVG 576
+ K I GKM+G
Sbjct: 1038 LEKLILKKGKMIG 1050
>gi|350264155|ref|YP_004875462.1| transcription-repair coupling factor [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|349597042|gb|AEP84830.1| transcription-repair coupling factor [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 1177
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/493 (43%), Positives = 327/493 (66%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + E
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPDHEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 616 FESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ ++ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETITERFQDYP-INIGLLSRFRTRKEANETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELETVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + SV +++ +ID+ ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKSVQFET-EIDVELDAYIP 1032
Query: 502 SEYINHLENPMEM 514
YI + ++M
Sbjct: 1033 ETYIQDGKQKIDM 1045
>gi|314937290|ref|ZP_07844632.1| transcription-repair coupling factor [Staphylococcus hominis subsp.
hominis C80]
gi|313654586|gb|EFS18336.1| transcription-repair coupling factor [Staphylococcus hominis subsp.
hominis C80]
Length = 1169
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/560 (40%), Positives = 358/560 (63%), Gaps = 13/560 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E K P+ L+KL + W++ K K + +++ + +L+ LY R Y ++ A
Sbjct: 551 YVASEDKSPK-LNKLG-GSEWKKTKAKVQQSVEDIADELIALYKEREMSVGYQYGEDTAE 608
Query: 80 A-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+F FPYE TPDQ K+ +++ D+ E+E PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QHDFEMDFPYELTPDQAKSIEEIKEDM-EKERPMDRLLCGDVGYGKTEVAVRAAFKAVME 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++II
Sbjct: 668 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLISRFRTAKEVRETKEGLKSGYVDII 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F G IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPEANIAVAHGQMTERDLEETMLSFINGEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
FGL+QLYQLRGRVGR+ + +AY + +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADHFGLSQLYQLRGRVGRSSRIGYAYFLHSTNKVLTETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS--VP-YKSVQIDIN 495
+D+ IRG G + G+QQ G + +VG DL+ +ML E+ V+E I+ VP V+++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEA---VNEKRGITEEVPDAPDVEMELH 1023
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
++ LP+EYI + + +E+ + K ++ L + L ++ P +E LL+ +
Sbjct: 1024 LDAYLPAEYIQNEQAKIEIYKKLRKVENEE--QLFDVKDELLDRFNDYPVEVERLLEMVE 1081
Query: 556 VRRMAADIGITKIYASGKMV 575
++ A G+T I GK +
Sbjct: 1082 IKIHALHAGVTLIKDKGKQI 1101
>gi|328948120|ref|YP_004365457.1| transcription-repair coupling factor [Treponema succinifaciens DSM
2489]
gi|328448444|gb|AEB14160.1| transcription-repair coupling factor [Treponema succinifaciens DSM
2489]
Length = 1246
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/580 (39%), Positives = 356/580 (61%), Gaps = 12/580 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E ++PR L ++ + W RK K + ++++ L++LY R + P+PK+ A
Sbjct: 641 SENEKPR-LDRIG-SKNWSARKAKVQQKVEEIAEKLIDLYSKRQASRGFPFPKDTEWNAA 698
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPYE TPDQ A +++ D+ E+ PMDRL+CGDVG+GKTE+A+RA F V GKQ
Sbjct: 699 FEAAFPYEDTPDQFSATQEIKADM-EKPVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQ 757
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
LAPT +LA+QHF+ ERF +P + + LSRF S E+++ + I G ++II+GT
Sbjct: 758 VAFLAPTTILAEQHFENSQERFKNFP-VTIAQLSRFVSPTEQKKIISKIASGEIDIIIGT 816
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L V++ NLGL+++DEEQRFGVK KEK+ + K ++D L +SATPIPRTL+++L
Sbjct: 817 HRILQKDVIFKNLGLMIIDEEQRFGVKDKEKLKTLKTNIDCLAMSATPIPRTLHMSLLKI 876
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD SL++TPP R PI+T + ++ EKV AI+ E+ RGGQVFY+ R++ LEE L+
Sbjct: 877 RDMSLLTTPPQNRQPIETAIEEYNDEKVARAIRNEVQRGGQVFYLHNRVETLEETRLKLE 936
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + + AHG+ S +L++ +F G IL+ T I+E+G+DI N NTII+
Sbjct: 937 NLVPEMLVETAHGKMTSEELDDIFRRFKMGGFHILVATTIIENGIDIPNVNTIIIDRADM 996
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
+G++QLYQLRGRVGR+D++A+AYLFYP LS+ A++RL + + ELG GF++A KDM
Sbjct: 997 YGVSQLYQLRGRVGRSDRKAYAYLFYPQNKALSEVAMKRLQVISDFTELGSGFKIAMKDM 1056
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G+ Q+G+V VG +++ +L ++ ++ + + P + V +++ +P
Sbjct: 1057 EIRGAGNLLGKDQSGEVYAVGFEMYLTLLNSAIERLS-NSDWTAP-EEVLLELEYTGFIP 1114
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI + ME+ + QD L E L ++G P + LL +R +
Sbjct: 1115 DTYIKDTQTKMELYKKIASVQTQD--SLNSVWEELFDRFGPIPDEVSSLLSLAKIRIICN 1172
Query: 562 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNS 601
+ I+ + +V ++ + KV K+ ID + + +S
Sbjct: 1173 KLSISSLKEKKGIVQVEFS---KVSKVNIDKLLGLIKTSS 1209
>gi|253576880|ref|ZP_04854205.1| transcription-repair coupling factor [Paenibacillus sp. oral taxon
786 str. D14]
gi|251843747|gb|EES71770.1| transcription-repair coupling factor [Paenibacillus sp. oral taxon
786 str. D14]
Length = 1177
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 229/563 (40%), Positives = 348/563 (61%), Gaps = 15/563 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNPAI 79
+E K P+ + KL W R K K + ++Q + DL++LY R Q P Y P
Sbjct: 550 SEDKEPK-IYKLGGN-EWNRVKNKVRSSVQNIADDLIKLYAER--QAAPGYAFEKDTPEQ 605
Query: 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 139
EF A FPYE TPDQ +A +++RD+ E+ PMDRL+CGDVG+GKTEVA+RA F G
Sbjct: 606 QEFEAMFPYEETPDQLRAIEEIKRDM-EQSRPMDRLLCGDVGYGKTEVAIRAAFKAAIEG 664
Query: 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 199
KQ VL PT +LA+QH++ ERF+ YP I + LSRF+S+ E+ E + I+ G ++I++
Sbjct: 665 KQVAVLVPTTILAQQHYETFRERFAGYP-INIQTLSRFRSRKEQNETIKGIRQGTVDIVI 723
Query: 200 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 259
GTH +L +V+ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++
Sbjct: 724 GTHRILSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML 783
Query: 260 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 319
G RD S+I TPP R P++T++ +S+ V AI+ E+ RGGQ++Y+ R++G+ E
Sbjct: 784 GVRDLSVIETPPENRFPVQTYVVEYSQSLVREAIEREMARGGQIYYLYNRVQGIHEMAAQ 843
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
+ P + + HGQ ++LE+T+ F G +L+ T+I+E+G+DI N NT+IV D
Sbjct: 844 ISMLVPEARVVVGHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA 903
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 439
+ GL+QLYQLRGRVGR+++ A+AY Y L++ A +RL +++E ELG GF++A +
Sbjct: 904 DKMGLSQLYQLRGRVGRSNRIAYAYFTYQKDKSLTEVAEKRLQSIKEFTELGSGFKIAMR 963
Query: 440 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP----YKSVQIDIN 495
D+ IRG G + G +Q G + +VG DL+ +ML E + K + P + ID+
Sbjct: 964 DLAIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKITMLGETPPAEATWNTTIDLG 1023
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
I+ LPS+YI +E+ + A+ Q + + + L ++G+ P +++ LL
Sbjct: 1024 IDAYLPSDYIYDSIQKIEIYKKT--ASVQTFEDVAELEDELLDRFGELPDAVQNLLAVAR 1081
Query: 556 VRRMAADIGITKIYASGKMVGMK 578
V+ GI + G+ V +K
Sbjct: 1082 VKLYGKQYGIESMTLRGEEVTIK 1104
>gi|227509305|ref|ZP_03939354.1| transcription-repair coupling factor [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227191235|gb|EEI71302.1| transcription-repair coupling factor [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 1168
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/556 (41%), Positives = 348/556 (62%), Gaps = 9/556 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
+E K+PR ++KL + W++ K K I+ + DL+ELY R +K YP + ++ E
Sbjct: 545 SEDKKPR-INKLG-GSEWQKTKRKVASKIEDIADDLIELYAKRDAEKGYAYPPDDSLQNE 602
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A+FPY TPDQ ++ +++ D+ E PMDRL+ GDVG+GKTEVALRA F V GKQ
Sbjct: 603 FEARFPYTETPDQLRSADEIKHDM-EHNKPMDRLLVGDVGYGKTEVALRAAFKAVEVGKQ 661
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERFS YP I+V +LSRFQ+ A+ +E L+ +K G ++++VGT
Sbjct: 662 VAFLVPTTILAQQHYETMLERFSDYP-IEVRVLSRFQTTAQIKETLEGLKKGTVDVVVGT 720
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V ++NLGLL++DEEQRFGVK KE+I + VDVLTL+ATPIPRTL +++ G
Sbjct: 721 HRLLSKDVKFSNLGLLIIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIPRTLNMSMMGV 780
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI+ E+ RGGQVFY+ R+ +E+ + L
Sbjct: 781 RDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMARGGQVFYLHNRVADIEKTVSQLS 840
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P IA HGQ Q+E+ + F G +L+ T I+E+G+DI N NT+ V++
Sbjct: 841 ELVPDARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADH 900
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG GF++A +D+
Sbjct: 901 MGLSQLYQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELGSGFKIAMRDL 960
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G+QQ+G V +VG DL+ +ML +++SK V+ +V++D + LP
Sbjct: 961 SIRGAGNLLGKQQSGFVDSVGYDLYTQMLSDAVSKKRGKNVVFKTDATVELD--LEAYLP 1018
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
S+YI + +E+ + QD L + T+ L ++G + LLK ++ A
Sbjct: 1019 SDYIQDSQQKIEIYKRIRQIENQD--QLNEVTDDLIDRFGDYNEPVANLLKISEMKMYAD 1076
Query: 562 DIGITKIYASGKMVGM 577
I K++ G V +
Sbjct: 1077 KAMIEKVHQDGPRVTL 1092
>gi|228476216|ref|ZP_04060919.1| transcription-repair coupling factor [Staphylococcus hominis SK119]
gi|228269701|gb|EEK11200.1| transcription-repair coupling factor [Staphylococcus hominis SK119]
Length = 1169
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/560 (40%), Positives = 359/560 (64%), Gaps = 13/560 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E K P+ L+KL + W++ K K + +++ + +L+ LY R Y ++ A
Sbjct: 551 YVASEDKSPK-LNKLG-GSEWKKTKAKVQQSVEDIADELIALYKEREMSVGYQYGEDTAE 608
Query: 80 A-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+F FPYE TPDQ K+ +++ D+ E+E PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QHDFEMDFPYELTPDQAKSIEEIKEDM-EKERPMDRLLCGDVGYGKTEVAVRAAFKAVME 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLISRFRTAKEVRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F G IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPEANIAVAHGQMTERDLEETMLSFINGEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY + +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHSTNKVLTETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS--VP-YKSVQIDIN 495
+D+ IRG G + G+QQ G + +VG DL+ +ML E+ V+E I+ VP V+++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEA---VNEKRGITEEVPDAPDVEMELH 1023
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
++ LP+EYI + + +E+ + K ++ L + L ++ P +E LL+ +
Sbjct: 1024 LDAYLPAEYIQNEQAKIEIYKKLRKVENEE--QLFDVKDELLDRFNDYPVEVERLLEMVE 1081
Query: 556 VRRMAADIGITKIYASGKMV 575
++ A G+T I GK +
Sbjct: 1082 IKIHALHAGVTLIKDKGKQI 1101
>gi|296329557|ref|ZP_06872043.1| transcription-repair coupling factor [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305672754|ref|YP_003864425.1| transcription-repair coupling factor [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296153300|gb|EFG94163.1| transcription-repair coupling factor [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305410997|gb|ADM36115.1| transcription-repair coupling factor [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 1177
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/493 (43%), Positives = 327/493 (66%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + E
Sbjct: 558 SEGKEPK-LYKLGGS-EWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPDHEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 616 FESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ ++ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETITERFQDYP-INIGLLSRFRTRKEANETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELETVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + +V +++ +ID+ ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTVQFET-EIDVELDAYIP 1032
Query: 502 SEYINHLENPMEM 514
YI + ++M
Sbjct: 1033 ETYIQDGKQKIDM 1045
>gi|301067528|ref|YP_003789551.1| transcription-repair coupling factor (superfamily II helicase)
[Lactobacillus casei str. Zhang]
gi|300439935|gb|ADK19701.1| Transcription-repair coupling factor (superfamily II helicase)
[Lactobacillus casei str. Zhang]
Length = 1174
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/535 (40%), Positives = 340/535 (63%), Gaps = 7/535 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ K K I+ + +L++LY R +K + P + +F A+FPY TPDQ ++
Sbjct: 568 WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQHKFEAEFPYPETPDQLRSA 627
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + GKQA +L PT +LA+QHFD
Sbjct: 628 KEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHFDT 686
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+VGTH LL V + +LGLLV
Sbjct: 687 MKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLLV 745
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R PI+
Sbjct: 746 IDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQ 805
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + + AI+ E++RGGQVFY+ R++ +E + L++ P + AHGQ
Sbjct: 806 TFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTE 865
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR+
Sbjct: 866 TQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGRSS 925
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G +
Sbjct: 926 RVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFI 985
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML E+++K + S +ID+ + LP++Y+ +E+
Sbjct: 986 DSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAYLPTDYVADSRQKIELYKRI 1043
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
+A + + +E L ++G P + LL +++R A + + +G+
Sbjct: 1044 READSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFADLAWVNHVTKAGQ 1096
>gi|116495978|ref|YP_807712.1| transcription-repair coupling factor [Lactobacillus casei ATCC 334]
gi|418003322|ref|ZP_12643410.1| transcription-repair coupling factor [Lactobacillus casei UCD174]
gi|116106128|gb|ABJ71270.1| transcription-repair coupling factor [Lactobacillus casei ATCC 334]
gi|410542528|gb|EKQ16973.1| transcription-repair coupling factor [Lactobacillus casei UCD174]
Length = 1174
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/535 (40%), Positives = 340/535 (63%), Gaps = 7/535 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ K K I+ + +L++LY R +K + P + +F A+FPY TPDQ ++
Sbjct: 568 WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQHKFEAEFPYPETPDQLRSA 627
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + GKQA +L PT +LA+QHFD
Sbjct: 628 KEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHFDT 686
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+VGTH LL V + +LGLLV
Sbjct: 687 MKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLLV 745
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R PI+
Sbjct: 746 IDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQ 805
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + + AI+ E++RGGQVFY+ R++ +E + L++ P + AHGQ
Sbjct: 806 TFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTE 865
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR+
Sbjct: 866 TQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGRSS 925
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G +
Sbjct: 926 RVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFI 985
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML E+++K + S +ID+ + LP++Y+ +E+
Sbjct: 986 DSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAYLPTDYVADSRQKIELYKRI 1043
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
+A + + +E L ++G P + LL +++R A + + +G+
Sbjct: 1044 READSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFADLAWVNHVTKAGQ 1096
>gi|220932952|ref|YP_002509860.1| transcription-repair coupling factor [Halothermothrix orenii H 168]
gi|219994262|gb|ACL70865.1| transcription-repair coupling factor [Halothermothrix orenii H 168]
Length = 1170
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 236/553 (42%), Positives = 343/553 (62%), Gaps = 13/553 (2%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQ 85
+P L KL W++ K K K ++++M + L+ELY R K + + EF
Sbjct: 564 KPPKLYKLGGND-WKKVKQKVKESVKEMAIGLLELYAERETIKGYSFSDDTVWQKEFEEA 622
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
FPYE TPDQ KA +V+ D+ E TPMDRL+CGDVG+GKTEVA+RA F V GKQ VL
Sbjct: 623 FPYEETPDQLKAIEEVKNDM-ESATPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQTAVL 681
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA+QH++ SER YP I + ++SRF++ AE+ E L + G ++II+GTH LL
Sbjct: 682 VPTTILAQQHYNTFSERMKNYP-INIEMISRFKTPAEQREVLKKLAAGEVDIIIGTHRLL 740
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
VV+N+LGLL++DEEQRFGV KEKI K +VDVLT++ATPIPRTL++AL G RD S
Sbjct: 741 SRDVVFNDLGLLIIDEEQRFGVSHKEKIKDLKRNVDVLTMTATPIPRTLHMALVGVRDMS 800
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I TPP R PI+T++ F+KE + A++ EL R GQV++V R++ ++E +++ P
Sbjct: 801 VIETPPENRYPIRTYIREFNKELIRDAVRKELGREGQVYFVHNRVEDIQEQATMIKKLVP 860
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
+A+AHGQ +LE M F +L+CT I+E+GLDI N NTIIV Q GLA
Sbjct: 861 ECRVAVAHGQMNEHKLERLMLDFYNHQYDVLVCTTIIETGLDIPNVNTIIVNRADQMGLA 920
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
QLYQLRGRVGR+++ A+AYL Y +L + A +RL A++E LG GF++A +D+ IRG
Sbjct: 921 QLYQLRGRVGRSNRIAYAYLLYEKDRVLPEVAEKRLRAIKEFTNLGSGFKIAMRDLEIRG 980
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEML---FESLSKVDEHCVISVPYKSVQIDININPRLPS 502
G + G +Q G + +VG L+ ++L E L ++ I+ V+I+++I+ LP
Sbjct: 981 AGNLLGPEQHGHIASVGFSLYCKLLEGAVEELKGKEKDKGIT----RVEIELDIDAYLPD 1036
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
EYI +++ + A +D + + L ++G P + LL ++ A+
Sbjct: 1037 EYITDSRQKIDIYKKI--MALKDFEEVEDMIDELIDRFGDPPEPVLNLLGISKLKVKASK 1094
Query: 563 IGITKIYASGKMV 575
+GI KI + K V
Sbjct: 1095 LGIDKISRNKKFV 1107
>gi|418011916|ref|ZP_12651664.1| transcription-repair coupling factor [Lactobacillus casei Lc-10]
gi|410551415|gb|EKQ25478.1| transcription-repair coupling factor [Lactobacillus casei Lc-10]
Length = 1174
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/535 (40%), Positives = 340/535 (63%), Gaps = 7/535 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ K K I+ + +L++LY R +K + P + +F A+FPY TPDQ ++
Sbjct: 568 WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQHKFEAEFPYPETPDQLRSA 627
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + GKQA +L PT +LA+QHFD
Sbjct: 628 KEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHFDT 686
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+VGTH LL V + +LGLLV
Sbjct: 687 MKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLLV 745
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R PI+
Sbjct: 746 IDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQ 805
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + + AI+ E++RGGQVFY+ R++ +E + L++ P + AHGQ
Sbjct: 806 TFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTE 865
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR+
Sbjct: 866 TQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGRSS 925
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G +
Sbjct: 926 RVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFI 985
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML E+++K + S +ID+ + LP++Y+ +E+
Sbjct: 986 DSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAYLPTDYVADSRQKIELYKRI 1043
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
+A + + +E L ++G P + LL +++R A + + +G+
Sbjct: 1044 READSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFADLAWVNHVTKAGQ 1096
>gi|418000181|ref|ZP_12640377.1| transcription-repair coupling factor [Lactobacillus casei T71499]
gi|410537101|gb|EKQ11680.1| transcription-repair coupling factor [Lactobacillus casei T71499]
Length = 1174
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/535 (40%), Positives = 340/535 (63%), Gaps = 7/535 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ K K I+ + +L++LY R +K + P + +F A+FPY TPDQ ++
Sbjct: 568 WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQHKFEAEFPYPETPDQLRSA 627
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + GKQA +L PT +LA+QHFD
Sbjct: 628 KEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHFDT 686
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+VGTH LL V + +LGLLV
Sbjct: 687 MKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLLV 745
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R PI+
Sbjct: 746 IDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQ 805
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + + AI+ E++RGGQVFY+ R++ +E + L++ P + AHGQ
Sbjct: 806 TFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTE 865
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR+
Sbjct: 866 TQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGRSS 925
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G +
Sbjct: 926 RVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFI 985
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML E+++K + S +ID+ + LP++Y+ +E+
Sbjct: 986 DSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAYLPTDYVADSRQKIELYKRI 1043
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
+A + + +E L ++G P + LL +++R A + + +G+
Sbjct: 1044 READSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFADLAWVNHVTKAGQ 1096
>gi|418009048|ref|ZP_12648890.1| transcription-repair coupling factor [Lactobacillus casei UW4]
gi|410544799|gb|EKQ19114.1| transcription-repair coupling factor [Lactobacillus casei UW4]
Length = 1174
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/535 (40%), Positives = 340/535 (63%), Gaps = 7/535 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ K K I+ + +L++LY R +K + P + +F A+FPY TPDQ ++
Sbjct: 568 WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQHKFEAEFPYPETPDQLRSA 627
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + GKQA +L PT +LA+QHFD
Sbjct: 628 KEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHFDT 686
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+VGTH LL V + +LGLLV
Sbjct: 687 MKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLLV 745
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R PI+
Sbjct: 746 IDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQ 805
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + + AI+ E++RGGQVFY+ R++ +E + L++ P + AHGQ
Sbjct: 806 TFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTE 865
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR+
Sbjct: 866 TQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGRSS 925
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G +
Sbjct: 926 RVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFI 985
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML E+++K + S +ID+ + LP++Y+ +E+
Sbjct: 986 DSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAYLPTDYVADSRQKIELYKRI 1043
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
+A + + +E L ++G P + LL +++R A + + +G+
Sbjct: 1044 READSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFADLAWVNHVTKAGQ 1096
>gi|417997275|ref|ZP_12637534.1| transcription-repair coupling factor [Lactobacillus casei M36]
gi|418014193|ref|ZP_12653804.1| transcription-repair coupling factor [Lactobacillus casei Lpc-37]
gi|410533035|gb|EKQ07723.1| transcription-repair coupling factor [Lactobacillus casei M36]
gi|410554370|gb|EKQ28347.1| transcription-repair coupling factor [Lactobacillus casei Lpc-37]
Length = 1174
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/535 (40%), Positives = 340/535 (63%), Gaps = 7/535 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ K K I+ + +L++LY R +K + P + +F A+FPY TPDQ ++
Sbjct: 568 WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQHKFEAEFPYPETPDQLRSA 627
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + GKQA +L PT +LA+QHFD
Sbjct: 628 KEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHFDT 686
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+VGTH LL V + +LGLLV
Sbjct: 687 MKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLLV 745
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R PI+
Sbjct: 746 IDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQ 805
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + + AI+ E++RGGQVFY+ R++ +E + L++ P + AHGQ
Sbjct: 806 TFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTE 865
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR+
Sbjct: 866 TQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGRSS 925
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G +
Sbjct: 926 RVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFI 985
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML E+++K + S +ID+ + LP++Y+ +E+
Sbjct: 986 DSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAYLPTDYVADSRQKIELYKRI 1043
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
+A + + +E L ++G P + LL +++R A + + +G+
Sbjct: 1044 READSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFADLAWVNHVTKAGQ 1096
>gi|417990833|ref|ZP_12631295.1| transcription-repair coupling factor [Lactobacillus casei A2-362]
gi|417994165|ref|ZP_12634499.1| transcription-repair coupling factor [Lactobacillus casei CRF28]
gi|410530481|gb|EKQ05254.1| transcription-repair coupling factor [Lactobacillus casei CRF28]
gi|410533492|gb|EKQ08170.1| transcription-repair coupling factor [Lactobacillus casei A2-362]
Length = 1174
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/535 (40%), Positives = 340/535 (63%), Gaps = 7/535 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ K K I+ + +L++LY R +K + P + +F A+FPY TPDQ ++
Sbjct: 568 WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQHKFEAEFPYPETPDQLRSA 627
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + GKQA +L PT +LA+QHFD
Sbjct: 628 KEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHFDT 686
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+VGTH LL V + +LGLLV
Sbjct: 687 MKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLLV 745
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R PI+
Sbjct: 746 IDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQ 805
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + + AI+ E++RGGQVFY+ R++ +E + L++ P + AHGQ
Sbjct: 806 TFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTE 865
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR+
Sbjct: 866 TQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGRSS 925
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G +
Sbjct: 926 RVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFI 985
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML E+++K + S +ID+ + LP++Y+ +E+
Sbjct: 986 DSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAYLPTDYVADSRQKIELYKRI 1043
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
+A + + +E L ++G P + LL +++R A + + +G+
Sbjct: 1044 READSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFADLAWVNHVTKAGQ 1096
>gi|402570692|ref|YP_006620035.1| transcription-repair coupling factor Mfd [Desulfosporosinus meridiei
DSM 13257]
gi|402251889|gb|AFQ42164.1| transcription-repair coupling factor Mfd [Desulfosporosinus meridiei
DSM 13257]
Length = 1177
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/560 (41%), Positives = 351/560 (62%), Gaps = 14/560 (2%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK-NPAIAEFAAQFPYEPTPDQKK 96
+ W + K K + A+++M +DL++LY R K + + N EF +FPY TPDQ +
Sbjct: 574 SEWYKVKKKTRSAVKEMAIDLVKLYAQREAIKGYAFSQDNVWQNEFEDKFPYVETPDQLQ 633
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
+ DV+ D+ R PMDRL+CGDVG+GKTEVALRA F V KQ VL PT +LA+QHF
Sbjct: 634 SIADVKSDMM-RSRPMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVAVLVPTTILAQQHF 692
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF YP I + +LSRF+S+ E++E + +K G ++IIVGTH +L V +N+LGL
Sbjct: 693 NTFKERFIGYP-ISIEMLSRFRSQKEQKEIIKGLKDGKIDIIVGTHRILSEAVKFNDLGL 751
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV KEK+ + K +VDVLTLSATPIPRTL+++L G RD S+I TPP R P
Sbjct: 752 LVIDEEQRFGVAHKEKLKTLKGNVDVLTLSATPIPRTLHMSLVGVRDMSVIETPPEGRYP 811
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T+++ F + V AI+ E+ RGGQVFYV R++ +++ FL + P +AHGQ
Sbjct: 812 VQTYVTEFRADVVREAIRREIQRGGQVFYVHNRVEDMDQVTRFLSELVPEARFGVAHGQM 871
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
R+LE+ M F + + +L+ T I+E+GLD+ NANT+I+ + FGL+QLYQLRGRVGR
Sbjct: 872 RERELEKVMLDFLEHEMDVLVSTTIIETGLDMPNANTLIIDEADHFGLSQLYQLRGRVGR 931
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
++++A+ YL Y + +L++ A +RLAA+ E E G GF++A +D+ IRG G + G QQ G
Sbjct: 932 SNRKAYTYLLYKPQKVLTEIAEKRLAAIREFTEYGAGFKIAMRDLEIRGAGNLIGAQQHG 991
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ VG +++ +ML E++ ++ V S I++ ++ LP Y+ + +
Sbjct: 992 HLAAVGFEMYSQMLKEAVQELRGEKVEEAIEPS--IELQVDAYLPDTYVADNQTKASLYQ 1049
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVG 576
A +D L + + L ++G P +E L++ + ++ +A + I +I + + V
Sbjct: 1050 RL--AMVRDEGQLSEMVDELVDRFGTPPREVEHLIEIIRIKLLAGSLKIEQIQQAKQNVS 1107
Query: 577 MKTNMNKKVFKMMIDSMTSE 596
++ F ID +T E
Sbjct: 1108 LR-------FLANIDFLTGE 1120
>gi|118444361|ref|YP_877116.1| transcription-repair coupling factor [Clostridium novyi NT]
gi|118134817|gb|ABK61861.1| transcription-repair coupling factor [Clostridium novyi NT]
Length = 1170
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 237/610 (38%), Positives = 378/610 (61%), Gaps = 18/610 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K P+ ++KL + W + K K + AI ++ +L++LY R K + K+ +
Sbjct: 559 SEGKSPK-VNKLG-GSEWTKAKKKVRKAINEIAEELVKLYAIRSTLKGHKFGKDTVWQKQ 616
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F +FPY+ TPDQ A +++ D+ E MDRL+CGDVG+GKTEVA+RA F V GKQ
Sbjct: 617 FEDEFPYDETPDQLTAIQEIKEDM-ESSKAMDRLLCGDVGYGKTEVAIRAAFKSVMDGKQ 675
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH+ + +RF +P +K+ ++SRF++ A+ + L +K G++++++GT
Sbjct: 676 VALLVPTTILAEQHYTNLVKRFCDFP-VKIDMISRFKTSAQVKAILKEVKAGNVDVLIGT 734
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L V + +LGLL+VDEEQRFGV KEKI + K +VDVLTL+ATPIPRTL+++LTG
Sbjct: 735 HRILQKDVEFKDLGLLIVDEEQRFGVTHKEKIKNLKKNVDVLTLTATPIPRTLHMSLTGI 794
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP ER P++T++ F+ + ++ AI E+DRGGQV++V R+ ++E +L
Sbjct: 795 RDISVIETPPEERYPVQTYVVEFNDQLILDAITREMDRGGQVYFVYNRVGSIKEMAAYLA 854
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P + IAHGQ R+LE+ M F + IL+CT I+E+GLDIQNANT+I+ D +
Sbjct: 855 KLVPDAKVGIAHGQMPERELEKVMFDFMKKEYDILVCTTIIETGLDIQNANTMIIYDADK 914
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
FGL+QLYQLRGRVGR ++ A+AYL Y +L++ A +RL A+++ ELG GF++A +D+
Sbjct: 915 FGLSQLYQLRGRVGRTNRMAYAYLTYKKDKVLTEVAEKRLKAIKDFTELGSGFKIAMRDL 974
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G Q G + +VG DL+ ML +++ K+ + + P ++ +D+ ++ +P
Sbjct: 975 EIRGAGNLIGAAQHGHMASVGYDLYCRMLEDTI-KLVKGEIDKEPIETT-VDLKVDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI +E+ + ++ +M E L ++ P S++ L+ Y++ +A
Sbjct: 1033 GNYIKDEVQKIEVYKKIANIDSKE--SMMDIQEELEDRFSDIPPSVDNLINIAYIKTIAN 1090
Query: 562 DIGITKIYASGKMVGMKTN----MNKKVFKMMIDSMTSEV-----HRNSLTFEGDQIKAE 612
+GI ++ V +K +N K+ K ++D + V SL + +IK E
Sbjct: 1091 SLGIVEVKEKPNEVIIKFQNKEYINPKLIKGIMDKYSKNVMFKLGDEPSLGYNTRKIKKE 1150
Query: 613 LLLELPREQL 622
L+ RE L
Sbjct: 1151 ELIMHLREFL 1160
>gi|417981717|ref|ZP_12622381.1| transcription-repair coupling factor [Lactobacillus casei 12A]
gi|417984538|ref|ZP_12625158.1| transcription-repair coupling factor [Lactobacillus casei 21/1]
gi|410521120|gb|EKP96085.1| transcription-repair coupling factor [Lactobacillus casei 12A]
gi|410525096|gb|EKQ00003.1| transcription-repair coupling factor [Lactobacillus casei 21/1]
Length = 1174
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/535 (40%), Positives = 340/535 (63%), Gaps = 7/535 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ K K I+ + +L++LY R +K + P + +F A+FPY TPDQ ++
Sbjct: 568 WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQHKFEAEFPYPETPDQLRSA 627
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + GKQA +L PT +LA+QHFD
Sbjct: 628 KEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHFDT 686
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+VGTH LL V + +LGLLV
Sbjct: 687 MKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLLV 745
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R PI+
Sbjct: 746 IDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQ 805
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + + AI+ E++RGGQVFY+ R++ +E + L++ P + AHGQ
Sbjct: 806 TFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTE 865
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR+
Sbjct: 866 TQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGRSS 925
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G +
Sbjct: 926 RVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFI 985
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML E+++K + S +ID+ + LP++Y+ +E+
Sbjct: 986 DSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAYLPTDYVADSRQKIELYKRI 1043
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
+A + + +E L ++G P + LL +++R A + + +G+
Sbjct: 1044 READSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFADLAWVNHVTKAGQ 1096
>gi|418006194|ref|ZP_12646155.1| transcription-repair coupling factor [Lactobacillus casei UW1]
gi|410544356|gb|EKQ18685.1| transcription-repair coupling factor [Lactobacillus casei UW1]
Length = 1186
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/535 (40%), Positives = 340/535 (63%), Gaps = 7/535 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ K K I+ + +L++LY R +K + P + +F A+FPY TPDQ ++
Sbjct: 568 WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQHKFEAEFPYPETPDQLRSA 627
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + GKQA +L PT +LA+QHFD
Sbjct: 628 KEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHFDT 686
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+VGTH LL V + +LGLLV
Sbjct: 687 MKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLLV 745
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R PI+
Sbjct: 746 IDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQ 805
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + + AI+ E++RGGQVFY+ R++ +E + L++ P + AHGQ
Sbjct: 806 TFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTE 865
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR+
Sbjct: 866 TQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGRSS 925
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G +
Sbjct: 926 RVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFI 985
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML E+++K + S +ID+ + LP++Y+ +E+
Sbjct: 986 DSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAYLPTDYVADSRQKIELYKRI 1043
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
+A + + +E L ++G P + LL +++R A + + +G+
Sbjct: 1044 READSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFADLAWVNHVTKAGQ 1096
>gi|417987792|ref|ZP_12628345.1| transcription-repair coupling factor [Lactobacillus casei 32G]
gi|410522184|gb|EKP97133.1| transcription-repair coupling factor [Lactobacillus casei 32G]
Length = 1174
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/535 (40%), Positives = 340/535 (63%), Gaps = 7/535 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ K K I+ + +L++LY R +K + P + +F A+FPY TPDQ ++
Sbjct: 568 WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQHKFEAEFPYPETPDQLRSA 627
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + GKQA +L PT +LA+QHFD
Sbjct: 628 KEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHFDT 686
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+VGTH LL V + +LGLLV
Sbjct: 687 MKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLLV 745
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R PI+
Sbjct: 746 IDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQ 805
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + + AI+ E++RGGQVFY+ R++ +E + L++ P + AHGQ
Sbjct: 806 TFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTE 865
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR+
Sbjct: 866 TQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGRSS 925
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G +
Sbjct: 926 RVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFI 985
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML E+++K + S +ID+ + LP++Y+ +E+
Sbjct: 986 DSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAYLPTDYVADSRQKIELYKRI 1043
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
+A + + +E L ++G P + LL +++R A + + +G+
Sbjct: 1044 READSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFADLAWVNHVTKAGQ 1096
>gi|239630377|ref|ZP_04673408.1| transcription-repair coupling factor [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|239526660|gb|EEQ65661.1| transcription-repair coupling factor [Lactobacillus paracasei subsp.
paracasei 8700:2]
Length = 1174
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/535 (40%), Positives = 340/535 (63%), Gaps = 7/535 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ K K I+ + +L++LY R +K + P + +F A+FPY TPDQ ++
Sbjct: 568 WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQHKFEAEFPYPETPDQLRSA 627
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + GKQA +L PT +LA+QHFD
Sbjct: 628 KEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHFDT 686
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+VGTH LL V + +LGLLV
Sbjct: 687 MKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLLV 745
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R PI+
Sbjct: 746 IDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQ 805
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + + AI+ E++RGGQVFY+ R++ +E + L++ P + AHGQ
Sbjct: 806 TFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTE 865
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR+
Sbjct: 866 TQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGRSS 925
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G +
Sbjct: 926 RVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFI 985
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML E+++K + S +ID+ + LP++Y+ +E+
Sbjct: 986 DSVGYDLYTQMLQEAVNK--RSGIKSAEKTDAEIDLGLEAYLPTDYVADSRQKIELYKRI 1043
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
+A + + +E L ++G P + LL +++R A + + +G+
Sbjct: 1044 READSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFADLAWVNHVTKAGQ 1096
>gi|429756007|ref|ZP_19288622.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
324 str. F0483]
gi|429172210|gb|EKY13787.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
324 str. F0483]
Length = 1109
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 226/561 (40%), Positives = 344/561 (61%), Gaps = 16/561 (2%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQ 85
+P + KL + AW+ K K K ++++ +L++LY R + K Y + + E A
Sbjct: 489 KPPKIYKLG-SGAWKALKQKTKTRVKEIAFNLIQLYAKRKESKGYAYSHDSYMQNELEAS 547
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V GKQ VL
Sbjct: 548 FLYEDTPDQSKATAEVKADM-ESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVL 606
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT VLA QHF S+R +P +++ L+RF++ EK+ L+ + +G L+II+GTH ++
Sbjct: 607 VPTTVLAFQHFQTFSQRMKDFP-VRIDYLNRFRTAKEKKTILEELANGQLDIIIGTHQIV 665
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L RD S
Sbjct: 666 GEKVAYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLS 725
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+TPPP R PI + + FS+E + I+YE+ RGGQVF++ R++ ++E +Q+ P
Sbjct: 726 VINTPPPNRYPIDSQVVPFSEEIIRDGIRYEIQRGGQVFFMHNRVENIQEVAGMIQRLLP 785
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
IAI HGQ ++LEETM F GA +L+ T I+E+GLD+ NANTI + + FGL+
Sbjct: 786 DARIAIGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNAHNFGLS 845
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG G +A KD+ IRG
Sbjct: 846 DLHQMRGRVGRSNKKAFCYFITPPLVAMSDDARKRIEAIAQFSDLGSGLNIAMKDLEIRG 905
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---------VQIDINI 496
G + G +Q+G + +G + + ++L E++ ++ E+ + + S QID +
Sbjct: 906 AGDLLGGEQSGFINELGFETYQKILQEAIVELKENEFSELYHTSEEDKTYLTDTQIDTDF 965
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
P Y+N + + + NE ++ L Q+ +L ++GK P LL + V
Sbjct: 966 ELLFPDTYVNRVAERLNLYNELSNLPNEE--ALQQYQRNLTDRFGKLPPQAIDLLNSVRV 1023
Query: 557 RRMAADIGITK-IYASGKMVG 576
+ +A +GI K + +GKM G
Sbjct: 1024 KWLATRMGIEKLVMKNGKMTG 1044
>gi|418619039|ref|ZP_13181881.1| transcription-repair coupling factor [Staphylococcus hominis VCU122]
gi|374825745|gb|EHR89668.1| transcription-repair coupling factor [Staphylococcus hominis VCU122]
Length = 1169
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/557 (40%), Positives = 356/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E K P+ L+KL + W++ K K + +++ + +L+ LY R Y ++ A
Sbjct: 551 YVASEDKSPK-LNKLG-GSEWKKTKAKVQQSVEDIADELIALYKEREMSVGYQYGEDTAE 608
Query: 80 A-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+F FPYE TPDQ K+ +++ D+ E+E PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QHDFEMDFPYELTPDQAKSIEEIKEDM-EKERPMDRLLCGDVGYGKTEVAVRAAFKAVME 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLISRFRTAKEVRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F G IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPEANIAVAHGQMTERDLEETMLSFINGEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY + +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHSANKVLTETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ + V+++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGITEEAPDAPDVEMELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K ++ L + L ++ P +E LL+ + ++
Sbjct: 1027 YLPAEYIQNEQAKIEIYKKLRKVENEE--QLFDVKDELLDRFNDYPVEVERLLEMVEIKI 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+T I GK +
Sbjct: 1085 HALHAGVTLIKDKGKQI 1101
>gi|150388007|ref|YP_001318056.1| transcription-repair coupling factor [Alkaliphilus metalliredigens
QYMF]
gi|149947869|gb|ABR46397.1| transcription-repair coupling factor [Alkaliphilus metalliredigens
QYMF]
Length = 1174
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/578 (38%), Positives = 362/578 (62%), Gaps = 12/578 (2%)
Query: 33 KLSDTTAWERRKTKGKV--AIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYE 89
KL+ E KTKGKV AI+ M +L++LY R + K + + +F FPYE
Sbjct: 566 KLNKLGGVEWVKTKGKVKKAIEDMAEELLKLYAERRRNKGHAFGNDGEWQKQFEDLFPYE 625
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ K+ +V+ D+ E+E MDRL+CGDVG+GKTEVA+RA F V KQ L PT
Sbjct: 626 ETPDQLKSIEEVKADM-EQEGAMDRLLCGDVGYGKTEVAIRAGFKAVMDSKQVAFLVPTT 684
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QHF+ +RFS +P + V +LSRF++ A++++ L+ ++ G++++++GTH LL +
Sbjct: 685 ILAQQHFNNFKQRFSGFP-VTVEMLSRFKTPAQQKQVLEGVRTGNVDVLIGTHRLLSKDI 743
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL+VDEEQRFGVK KE++ K S+DVLTL+ATPIPRTL++++ G RD S+I
Sbjct: 744 EFKDLGLLIVDEEQRFGVKHKERMKQMKESIDVLTLTATPIPRTLHMSMVGIRDMSVIED 803
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP ER P++T++ +++ +I AI E+ RGGQ +YV R+ G+ + LQ+ P +
Sbjct: 804 PPEERFPVQTYVIPYNESMIIDAITKEMARGGQTYYVYNRVDGIHQVARKLQELIPEARV 863
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
A+ HGQ R+LE M + G +L+CT I+E+GLDI N NTI++ D + GL+QLYQ
Sbjct: 864 AVGHGQMGERELEMLMMDYLDGVYDVLVCTTIIETGLDISNVNTIMIHDADKLGLSQLYQ 923
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR+ ++ +AYL Y +LS+ A +RL A++E E G GF++A +D+ IRG G +
Sbjct: 924 LRGRVGRSSQQGYAYLMYQRDKILSEVAEKRLKAIKEFTEFGSGFKIAMRDLEIRGAGNL 983
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G QQ G + ++G DL+ ++L E+++++ V Y+ +++N+N +P +I
Sbjct: 984 LGSQQHGHMASIGYDLYIKLLEETMAEMKGEVV--EKYEDTNMELNVNAYIPERFIGSST 1041
Query: 510 NPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+ +E+ + A ++D++ + E + ++G P S+ LL Y++ + I + I
Sbjct: 1042 HKIEIYKKIASIRNQEDLYAI---EEEIEDRFGDIPMSVRNLLMISYIKALGNQIRVQTI 1098
Query: 569 YASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 606
K + ++ ++K+ I S+ + R ++F G
Sbjct: 1099 TQKEKEIRIQFTRSQKLKPENIGSVLHQYPRK-VSFHG 1135
>gi|366087296|ref|ZP_09453781.1| transcription-repair coupling factor [Lactobacillus zeae KCTC 3804]
Length = 1175
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 218/524 (41%), Positives = 336/524 (64%), Gaps = 7/524 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
T W++ K K I+ + +L++LY R +K + P + +F +FPY TPDQ +
Sbjct: 566 TEWQKTKRKVAARIEDIADELIDLYAKREAEKGYAFGPDDDLQQKFEDEFPYPETPDQLR 625
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
+ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F + GKQ +L PT +LA+QHF
Sbjct: 626 SAKEIKRDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQVAILVPTTILAQQHF 684
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
D + ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+VGTH LL V + +LGL
Sbjct: 685 DTMKERFADFP-IKVGLLSRFQTPHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGL 743
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R P
Sbjct: 744 LVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYP 803
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+T + + + AI+ E++RGGQVFY+ R++ +E + L++ P I AHGQ
Sbjct: 804 IQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASIGYAHGQM 863
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR
Sbjct: 864 TETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGR 923
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ + A+AY Y +L+++A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G
Sbjct: 924 SSRVAYAYFMYQPMKVLNEEAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHG 983
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +VG DL+ +ML E+++K + + +ID+ + LP++Y+ +E+
Sbjct: 984 FIDSVGYDLYTQMLQEAVNK--RRGIKTAQKTDAEIDLGLEAYLPTDYVADSRQKIELYK 1041
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
+A + + +E L ++G P + LL +++R A
Sbjct: 1042 RIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFA 1083
>gi|406934956|gb|EKD69066.1| hypothetical protein ACD_47C00275G0003, partial [uncultured
bacterium]
Length = 1113
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 245/617 (39%), Positives = 370/617 (59%), Gaps = 14/617 (2%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQF 86
PR + KL+D++ W+R+K + +I+K+ L+ LY R K + N + +F F
Sbjct: 501 PR-IGKLNDSS-WKRQKATARKSIEKLAAYLVTLYARRSIAKGHQFGLDNDLMRQFEDSF 558
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
Y+ T DQ+ + ++V+ D+ E E PMDRLICGDVGFGKTEVA+RA F GKQ LA
Sbjct: 559 AYKETVDQQNSIVEVKCDM-ESEKPMDRLICGDVGFGKTEVAIRAAFKACMDGKQVAFLA 617
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA QH++ + RFS YP + V LLSRF++K+E++E ++ +K G ++++VGTH ++
Sbjct: 618 PTTILAMQHYNTLISRFSSYP-VSVDLLSRFRTKSEQKETVEKLKEGKVDVVVGTHRIIQ 676
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
+ + +LGLL+VDEEQRFGVK KE++ K VDVLTL+ATPIPRTLY++L G RD S
Sbjct: 677 KDMGFKDLGLLIVDEEQRFGVKHKERLKELKNHVDVLTLTATPIPRTLYMSLVGSRDIST 736
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPP ERLP+KT + +S++ V AI EL R GQV+YV RI + + L PG
Sbjct: 737 INTPPAERLPVKTFVLRYSEDTVKEAITRELLRRGQVYYVHNRIDTINSVVSKLSALVPG 796
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+ AHGQ +QLE+ M F IL+ T I+E+GLDI N NTII++ FGL+Q
Sbjct: 797 ARVRAAHGQMDEKQLEKIMVDFCDREFDILVSTTIIENGLDISNVNTIIIERADTFGLSQ 856
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
LYQLRGRVGRA +A+AY F+P +S+LS A +RL A++E ELG G+++A +D+ IRG
Sbjct: 857 LYQLRGRVGRAKNQAYAYFFFPHESILSHIAKKRLQAMKEFSELGSGYKIAMRDLEIRGA 916
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
G + G +Q G + +G +++ +L E + K+ + +I+IN N LP+ YI
Sbjct: 917 GNLLGHEQHGHICTIGFEMYCRLLEEEIKKIKGESIERKDEFDCEIEINTNAYLPTTYIT 976
Query: 507 HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGIT 566
+++ AA D L + + L ++GK P + L + + ++ + +
Sbjct: 977 STYQKIDVYKRMVAAAGFD--ELAELNDELIDRFGKYPEQVYNLFQIVKIKILGRRLKAL 1034
Query: 567 KIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLL----ELPREQL 622
+ K + +K ++ ++++ + +N +TF D ++ LL +L + L
Sbjct: 1035 SVKEEKKHIIIKFQNAGQIDPSAVETLRRKFGQN-VTF-SDDVEITLLYLTKADLKGDNL 1092
Query: 623 LNWIFQCLAELYASLPA 639
L I L L AS PA
Sbjct: 1093 LQMIISALKILDAS-PA 1108
>gi|227533044|ref|ZP_03963093.1| transcription-repair coupling factor (TRCF) [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|227189445|gb|EEI69512.1| transcription-repair coupling factor (TRCF) [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
Length = 1174
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/535 (40%), Positives = 340/535 (63%), Gaps = 7/535 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ K K I+ + +L++LY R +K + P + +F A+FPY TPDQ ++
Sbjct: 568 WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQHKFEAEFPYPETPDQLRSA 627
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + GKQA +L PT +LA+QHFD
Sbjct: 628 KEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHFDT 686
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+VGTH LL V + +LGLLV
Sbjct: 687 MKERFADFP-IKVGLLSRFQTPHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLLV 745
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R PI+
Sbjct: 746 IDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQ 805
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + + AI+ E++RGGQVFY+ R++ +E + L++ P + AHGQ
Sbjct: 806 TFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTE 865
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR+
Sbjct: 866 TQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGRSS 925
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G +
Sbjct: 926 RVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFI 985
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML E+++K + S +ID+ + LP++Y+ +E+
Sbjct: 986 DSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAYLPTDYVADSRQKIELYKRI 1043
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
+A + + +E L ++G P + LL +++R A + + +G+
Sbjct: 1044 READSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFADLAWVNHVTKAGQ 1096
>gi|323490992|ref|ZP_08096186.1| transcription-repair coupling factor [Planococcus donghaensis MPA1U2]
gi|323395348|gb|EGA88200.1| transcription-repair coupling factor [Planococcus donghaensis MPA1U2]
Length = 1177
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 351/557 (63%), Gaps = 8/557 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
+E K P+ L K+ W++ +TK A+Q + DL++LY R + + + + +
Sbjct: 558 SEEKEPK-LHKMGGA-EWKKTRTKVSAAVQDIADDLIKLYAEREALRGFAFSEEQDMQRQ 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A+FPYE T DQ ++ +V+RD+ E E PMDRLICGDVG+GKTEVA+RA F V GKQ
Sbjct: 616 FEAEFPYEETTDQLRSINEVKRDM-ENERPMDRLICGDVGYGKTEVAIRAAFKAVLDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QHF+ +SERF +YP I VGL+SRF+SK ++ E + +K+G ++I+VGT
Sbjct: 675 VAFLVPTTILAQQHFETMSERFKEYP-ITVGLMSRFRSKKQQTETVKGLKNGSVDIVVGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRILSKDMHYKDLGLLIIDEEQRFGVTHKEKIKQMKTNVDVLTLTATPIPRTLHMSMIGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P+++++ + V AI+ E+ RGGQVFY+ R+ + ++ +Q
Sbjct: 794 RDLSVIETPPANRFPVQSYVMEHNGALVREAIEREMARGGQVFYLYNRVDDMTRKVEEIQ 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
Q P + AHGQ +LE + F G +L+ T I+E+G+DI N NT+IV + +
Sbjct: 854 QLVPEARVGYAHGQMSETELESVILSFLDGDYDVLVTTTIIETGIDIPNVNTLIVYNADR 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+ + A+AY Y +L+D A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSSRVAYAYFMYQRDKVLTDVAEKRLMAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + + V ++I ++++ +P
Sbjct: 974 TIRGAGNLLGSQQHGFIDSVGFDLYSQMLQEAIDE-RQTGVKKEVVPEIEISLDVDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI+ ++M + ++ + + + L ++G P + LL+ ++ A
Sbjct: 1033 DTYISDGYQKIQMYKRVKGIETEE--EMRELQDELIDRFGDMPTETDSLLRIARMKVWAR 1090
Query: 562 DIGITKIYASGKMVGMK 578
++G+ I +GK+V ++
Sbjct: 1091 EVGVESIKQNGKIVSVR 1107
>gi|288554664|ref|YP_003426599.1| transcription-repair coupling factor [Bacillus pseudofirmus OF4]
gi|288545824|gb|ADC49707.1| transcription-repair coupling factor (TRCF) [Bacillus pseudofirmus
OF4]
Length = 1180
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/514 (41%), Positives = 334/514 (64%), Gaps = 6/514 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA-IAEFAAQFPYEPTPDQKKAF 98
W++ K + + +++ + DL++LY R K Y K+ A A+F FPY+ T DQ +A
Sbjct: 575 WKKVKKRVQSSVEDIADDLIKLYAEREASKGYAYSKDGAEQADFEGTFPYQETEDQIRAV 634
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E+E PMDRL+CGDVG+GKTEVA+RA F + GKQ +L PT +LA+QH++
Sbjct: 635 EEIKEDM-EKERPMDRLLCGDVGYGKTEVAIRAAFKAIMDGKQVAILVPTTILAQQHYET 693
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERFS +P I +G+LSRF+S+ E+ E L +K G +++IVGTH LL +V+ +LGLL+
Sbjct: 694 IKERFSDFP-INIGVLSRFRSRKEQTETLKGLKAGSVDLIVGTHRLLSKDIVFKDLGLLI 752
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
VDEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 753 VDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 812
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E + + P ++ AHGQ
Sbjct: 813 TYVVEYNASLIREAIERELTRGGQVYFLYNRVEDIERMTEQISMLVPDAKVSFAHGQMNE 872
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
R+LE M F +G +L+ T I+E+G+DI N NT+I+ D + GL+QLYQ+RGRVGR++
Sbjct: 873 RELESIMLDFLEGNSDVLVTTTIIETGVDIPNVNTLIINDADKMGLSQLYQIRGRVGRSN 932
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A++E ELG GF++A +D+ IRG G + G QQ G +
Sbjct: 933 RVAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNLLGAQQHGFI 992
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML E++ + P++ V++DI ++ +P YI + +EM
Sbjct: 993 ESVGFDLYSQMLKEAIEERKGDKPKEPPFQ-VEMDIKVDAYIPESYIQDAKQKIEMYKRF 1051
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 552
+ + I L + + ++G+ P +E LL+
Sbjct: 1052 KGC--ETIEDLADLKDEMFDRFGEYPKQVEYLLR 1083
>gi|191639457|ref|YP_001988623.1| transcription-repair coupling factor [Lactobacillus casei BL23]
gi|385821223|ref|YP_005857610.1| transcription-repair coupling factor [Lactobacillus casei LC2W]
gi|385824415|ref|YP_005860757.1| transcription-repair coupling factor [Lactobacillus casei BD-II]
gi|409998319|ref|YP_006752720.1| transcription-repair coupling factor [Lactobacillus casei W56]
gi|190713759|emb|CAQ67765.1| Transcription-repair coupling factor (TRCF) [Lactobacillus casei
BL23]
gi|205270976|emb|CAP07849.1| transcriptional-repair coupling factor [Lactobacillus casei BL23]
gi|327383550|gb|AEA55026.1| Transcription-repair coupling factor [Lactobacillus casei LC2W]
gi|327386742|gb|AEA58216.1| Transcription-repair coupling factor [Lactobacillus casei BD-II]
gi|406359331|emb|CCK23601.1| Transcription-repair-coupling factor [Lactobacillus casei W56]
Length = 1174
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/535 (40%), Positives = 339/535 (63%), Gaps = 7/535 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ K K I+ + +L++LY R +K + P + +F A+FPY TPDQ ++
Sbjct: 568 WQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQHKFEAEFPYPETPDQLRSA 627
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + GKQA +L PT +LA+QHFD
Sbjct: 628 KEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYGKQAAILVPTTILAQQHFDT 686
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+VGTH LL V + +LGLLV
Sbjct: 687 MKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLLV 745
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R PI+
Sbjct: 746 IDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQ 805
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + + AI+ E++RGGQVFY+ R++ +E + L++ P + AHGQ
Sbjct: 806 TFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTE 865
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR+
Sbjct: 866 TQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGRSS 925
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A++ ELG GF++A +D+ IRG G + G+QQ G +
Sbjct: 926 RVAYAYFMYQPMKVLNEVAEKRLQAIKNFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFI 985
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML E+++K + S +ID+ + LP++Y+ +E+
Sbjct: 986 DSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAYLPTDYVADSRQKIELYKRI 1043
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
+A + + +E L ++G P + LL +++R A + + +G+
Sbjct: 1044 READSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFADLAWVNHVTKAGQ 1096
>gi|319891456|ref|YP_004148331.1| transcription-repair coupling factor [Staphylococcus pseudintermedius
HKU10-03]
gi|386320203|ref|YP_006016366.1| transcription-repair coupling factor [Staphylococcus pseudintermedius
ED99]
gi|317161152|gb|ADV04695.1| Transcription-repair coupling factor [Staphylococcus pseudintermedius
HKU10-03]
gi|323465374|gb|ADX77527.1| transcription-repair coupling factor [Staphylococcus pseudintermedius
ED99]
Length = 1170
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/558 (40%), Positives = 351/558 (62%), Gaps = 16/558 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE- 81
+E K P+ L KL + W++ K K + +++ + +L+ LY R ++ Y P AE
Sbjct: 556 SEDKSPK-LYKLG-GSEWKKTKAKVQRSVEDIADELIALYKER--EQSVGYQFGPDTAEQ 611
Query: 82 --FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 139
F FPY+ T DQ K+ ++++ D+ E + PMDRL+CGDVG+GKTEVA+RA F V +G
Sbjct: 612 YAFEMDFPYDLTDDQAKSIIEIKNDM-ESQRPMDRLLCGDVGYGKTEVAVRAAFKAVMSG 670
Query: 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 199
KQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETLIERMRDFP-VEIHLMSRFRTPKEVRETKEGLKSGFVDIVV 729
Query: 200 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 259
GTH LLG V Y +LGLL+VDEEQRFGV+ KEKI K +VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHKLLGKTVEYKDLGLLIVDEEQRFGVRHKEKIKQLKANVDVLTLTATPIPRTLHMSML 789
Query: 260 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 319
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ R+ + E +
Sbjct: 790 GVRDLSIIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNRVSSIYEKREQ 849
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
LQ P I +AHGQ R LEETM F G IL+ T I+E+G+D+ NANT+I++D
Sbjct: 850 LQMLMPDASIGVAHGQLPERDLEETMLDFINGEYDILVTTTIIETGVDVPNANTLIIEDA 909
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 439
+FGL+QLYQLRGRVGR+ + +AY + +L++ A ERL A++E ELG GF++A +
Sbjct: 910 DRFGLSQLYQLRGRVGRSSRIGYAYFLHATNRVLNEVAEERLQAIKEFTELGSGFKIAMR 969
Query: 440 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVI--SVPYKSVQIDININ 497
D+ IRG G + G+QQ G + +VG DL+ +ML E+ V+E I P +++D+ ++
Sbjct: 970 DLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEA---VNEKRGIKEETPVPELELDLKLD 1026
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
LP+EYI + + +E+ + A + + LM + L ++ P +E LL + ++
Sbjct: 1027 AYLPAEYIRNEQAKIEIYKKLR--ATESMEQLMDIKDELLDRFNAYPTEVEQLLDSVEIK 1084
Query: 558 RMAADIGITKIYASGKMV 575
+G+ + +GK +
Sbjct: 1085 VHLLHVGVQSVKDTGKTI 1102
>gi|420186402|ref|ZP_14692471.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM040]
gi|394252193|gb|EJD97232.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM040]
Length = 1169
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 226/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A GI I GK +
Sbjct: 1085 HALHAGIELIKDKGKSI 1101
>gi|429765475|ref|ZP_19297767.1| transcription-repair coupling factor [Clostridium celatum DSM 1785]
gi|429186294|gb|EKY27245.1| transcription-repair coupling factor [Clostridium celatum DSM 1785]
Length = 816
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 233/598 (38%), Positives = 366/598 (61%), Gaps = 8/598 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQKK 96
T W++ K K + +I ++ DL++LY R K Y K+ +F +FPYE TPDQ
Sbjct: 218 TEWQKAKAKVRKSINEIAEDLVKLYATRAALKGYKYSKDTEWQKQFEDEFPYEETPDQLS 277
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
+ ++++D+ E + PMDRL+CGDVG+GKTEVA+RA F V GKQ L PT +LA+QH+
Sbjct: 278 SLEEIKKDM-ESDKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQVAFLVPTTILAEQHY 336
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+++RFS +P +K+ ++SRF+S E+ L +K G+++I++GTH L+ + + +LGL
Sbjct: 337 KNLTKRFSDFP-VKIDMISRFRSTKEQRATLKALKEGNVDILIGTHRLVSKDIEFKDLGL 395
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L+VDEEQRFGV QKEKI + K +VDVLTLSATPIPRTL+++LTG RD S+I TPP ER P
Sbjct: 396 LIVDEEQRFGVAQKEKIKNLKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPEERYP 455
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+T++ + + + AI E+ RGGQV++V R++ +E +++++ P + I HGQ
Sbjct: 456 IQTYVVEQNDQLIRDAILREMGRGGQVYFVYNRVESIEGMANYIRELVPECKVGIIHGQM 515
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
++LE M F +L+CT I+E+G+DI N NT+IV + + GL+QLYQLRGRVGR
Sbjct: 516 TEKELETEMMNFMNKEYDVLVCTTIIETGIDIPNVNTMIVNNADKMGLSQLYQLRGRVGR 575
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+++ A+AY Y +L++ A +RL AL++ ELG GF++A +D+ IRG G + G Q G
Sbjct: 576 SNRIAYAYFIYTKDKVLTEIAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNMMGSSQHG 635
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +G DL+ ML E K+ + + P ++ +DI I+ +PS YI +E+
Sbjct: 636 HMAAIGYDLYCRML-EDTVKLIKGEIDKEPIETT-VDIKIDAYIPSSYIQDEIQKIEIYK 693
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVG 576
+ AA + + E L +Y P ++ L+ Y++ +A ++ I +I + K V
Sbjct: 694 KI--AAIESLEEYQDIKEELEDRYSALPEAVYNLMDIAYIKSLAKELLIEEIKETPKEVR 751
Query: 577 MKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD-QIKAELLLELPREQLLNWIFQCLAEL 633
K K F + + + N + + GD A L + +E+ +N+ + L EL
Sbjct: 752 FKFQQGYKDFNNIYKILLKKYKENIILYFGDIPFFAIKLNTIKKEEAINFYKEILKEL 809
>gi|358052308|ref|ZP_09146214.1| transcription-repair coupling factor [Staphylococcus simiae CCM 7213]
gi|357258191|gb|EHJ08342.1| transcription-repair coupling factor [Staphylococcus simiae CCM 7213]
Length = 1168
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/557 (40%), Positives = 353/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL T W++ K K + +++ + +L+ELY R + + ++
Sbjct: 550 YVASEDKTPK-LNKLGGT-EWKKTKAKVQQSVEDIAEELIELYKEREMAEGYQFGEDTTE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKMDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF+S E ++ + IK G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRSAKEIKQTKEGIKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIEYKDLGLLIVDEEQRFGVRHKERIKTMKNNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKETQPDAPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + + ++ L+ + L ++ P +E LL + ++
Sbjct: 1026 YLPTEYITNEQAKIEIYKKLRQIETEE--QLLDIKDELIDRFNDYPIEVERLLDIVEIKI 1083
Query: 559 MAADIGITKIYASGKMV 575
A GIT I GK +
Sbjct: 1084 HALHAGITLIKDKGKTI 1100
>gi|429745651|ref|ZP_19279054.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
380 str. F0488]
gi|429168353|gb|EKY10190.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
380 str. F0488]
Length = 1109
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/561 (40%), Positives = 343/561 (61%), Gaps = 16/561 (2%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQ 85
+P + KL + W+ K K K ++++ +L++LY R + K Y + + E A
Sbjct: 489 KPPKIYKLG-SGVWKALKQKTKTRVKEIAFNLIQLYAKRKESKGYAYSHDSYMQNELEAS 547
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ KA DV+ D+ E PMDRL+CGDVGFGKTEVA+RA F V GKQ VL
Sbjct: 548 FLYEDTPDQSKATADVKADM-ESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVL 606
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT VLA QHF S+R +P +++ L+RF++ EK+ L+ + +G L+II+GTH ++
Sbjct: 607 VPTTVLAFQHFQTFSQRMKDFP-VRIDYLNRFRTAKEKKTILEELANGQLDIIIGTHQIV 665
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L RD S
Sbjct: 666 GEKVAYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLS 725
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+TPPP R PI + + FS+E + I+YE+ RGGQVF++ R++ ++E +Q+ P
Sbjct: 726 VINTPPPNRYPIDSQVVPFSEEIIRDGIRYEIQRGGQVFFMHNRVENIQEVAGMIQRLLP 785
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
IAI HGQ ++LEETM F GA +L+ T I+E+GLD+ NANTI + + FGL+
Sbjct: 786 DARIAIGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNAHNFGLS 845
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG G +A KD+ IRG
Sbjct: 846 DLHQMRGRVGRSNKKAFCYFITPPLVAMSDDARKRIEAIAQFSDLGSGLNIAMKDLEIRG 905
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---------VQIDINI 496
G + G +Q+G + +G + + ++L E++ ++ E+ + + + QID +
Sbjct: 906 AGDLLGGEQSGFINELGFETYQKILQEAIVELKENEFSELYHTAEEDKTYLTDTQIDTDF 965
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
P Y+N + + + NE ++ L Q+ +L ++GK P LL + V
Sbjct: 966 ELLFPDTYVNRVAERLNLYNELSNLPNEE--ALQQYQRNLTDRFGKLPPQAIDLLNSVRV 1023
Query: 557 RRMAADIGITK-IYASGKMVG 576
+ +A +GI K + +GKM G
Sbjct: 1024 KWLATRMGIEKLVMKNGKMTG 1044
>gi|392409977|ref|YP_006446584.1| transcription-repair coupling factor Mfd [Desulfomonile tiedjei DSM
6799]
gi|390623113|gb|AFM24320.1| transcription-repair coupling factor Mfd [Desulfomonile tiedjei DSM
6799]
Length = 1203
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 236/558 (42%), Positives = 343/558 (61%), Gaps = 24/558 (4%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFA 83
++ P + KL W + K + K +I++M +L+E+Y R +R Y P + A F
Sbjct: 575 SEEPPRIDKLG-GKGWVKIKARIKKSIKEMAGELLEIYAKRQVTRRSAYSPPDENFAAFE 633
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A F +E TPDQ +A DV + + + PMDRL+CGDVG+GKTEVALRA F + G+Q
Sbjct: 634 ASFDFEETPDQARAIQDVMESM-DTDMPMDRLVCGDVGYGKTEVALRAAFRAIMDGRQVA 692
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
VL PT VLA+QHFD +RF YP I V +LSRF+S AE++E L ++ G ++++VGTH
Sbjct: 693 VLVPTTVLAQQHFDTFKKRFRGYPFI-VDVLSRFRSNAEQKETLRQVEQGKVDLVVGTHR 751
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LL VV+ +LGLLVVDEEQRFGV KE++ +K VDVLTL+ATPIPRTL L+LTG RD
Sbjct: 752 LLQKDVVFKDLGLLVVDEEQRFGVAHKERVKKYKAHVDVLTLTATPIPRTLNLSLTGIRD 811
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I TPP R I+T++ S+E V A+ EL+RGGQVFYV R++ + LQ+
Sbjct: 812 LSVIETPPTNRQSIRTYVMRQSEEVVREALLKELNRGGQVFYVHNRVQSIARRTAALQKL 871
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P IAHGQ R+LE+ M F G IL+CT+I+ESGLDI ANTI+++ FG
Sbjct: 872 VPEGRFCIAHGQMAERELEQVMVDFLTGKYNILVCTSIIESGLDIPTANTIVIERSDTFG 931
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
LA LYQLRGRVGR+ A+AYL P +++++ A++RL+ ++E LGQGF++A +DM I
Sbjct: 932 LADLYQLRGRVGRSHVRAYAYLLTPPETMITPDAVKRLSVMQEYSSLGQGFRIAMRDMEI 991
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSE 503
RG G I G Q+G V VG +++ ++L +++ ++ S P +I + + +P +
Sbjct: 992 RGAGNILGTSQSGHVSLVGYEMYLDLLEDAIQELKGEE--SAPRIDPEIHLKMEVYIPDD 1049
Query: 504 YINHLENPMEMVNEAEKA--------AEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
Y+ + M + KA E++I+ L YGK P + L++ +
Sbjct: 1050 YVPDTQQRMNLYKRLSKAETNSEIEDTEEEIFDL----------YGKPPIQVHHLIQVMR 1099
Query: 556 VRRMAADIGITKIYASGK 573
+R +I I ++ +G+
Sbjct: 1100 IRLAMKEIRILRLDYNGQ 1117
>gi|227512317|ref|ZP_03942366.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC
11577]
gi|227084492|gb|EEI19804.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC
11577]
Length = 1168
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/556 (41%), Positives = 347/556 (62%), Gaps = 9/556 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
+E K+PR ++KL + W++ K K I+ + DL+ELY R +K YP + ++ E
Sbjct: 545 SEDKKPR-INKLG-GSEWQKTKRKVASKIEDIADDLIELYAKRDAEKGYAYPPDDSLQNE 602
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A+FPY TPDQ ++ +++ D+ E PMDRL+ GDVG+GKTEVALRA F V GKQ
Sbjct: 603 FEARFPYTETPDQLRSADEIKHDM-EHNKPMDRLLVGDVGYGKTEVALRAAFKAVEVGKQ 661
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERFS YP I+V +LSRFQ+ A+ +E L+ +K G ++++VGT
Sbjct: 662 VAFLVPTTILAQQHYETMLERFSDYP-IEVRVLSRFQTTAQIKETLEGLKKGTVDVVVGT 720
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V ++NLGLL++DEEQRFGVK KE+I + VDVLTL+ATPIPRTL +++ G
Sbjct: 721 HRLLSKDVKFSNLGLLIIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIPRTLNMSMMGV 780
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI+ E+ RGGQVFY+ R+ +E+ + L
Sbjct: 781 RDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMARGGQVFYLHNRVADIEKTVSQLS 840
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P IA HGQ Q+E+ + F G +L+ T I+E+G+DI N NT+ V++
Sbjct: 841 ELVPDARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADH 900
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG GF++A +D+
Sbjct: 901 MGLSQLYQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELGSGFKIAMRDL 960
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G+QQ+G V +VG DL+ +ML +++SK V +V++D + LP
Sbjct: 961 SIRGAGNLLGKQQSGFVDSVGYDLYTQMLSDAVSKKRGKNVAFKTDATVELD--LEAYLP 1018
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
S+YI + +E+ + QD L + T+ L ++G + LLK ++ A
Sbjct: 1019 SDYIQDSQQKIEIYKRIRQIENQD--QLNEVTDDLIDRFGDYNEPVANLLKISEMKMYAD 1076
Query: 562 DIGITKIYASGKMVGM 577
I K++ G V +
Sbjct: 1077 KAMIEKVHQDGPRVTL 1092
>gi|57866056|ref|YP_187737.1| transcription-repair coupling factor [Staphylococcus epidermidis
RP62A]
gi|420166934|ref|ZP_14673611.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM088]
gi|420196114|ref|ZP_14701893.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM021]
gi|420215505|ref|ZP_14720771.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH05005]
gi|420218229|ref|ZP_14723326.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH05001]
gi|420221252|ref|ZP_14726203.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH04008]
gi|81819455|sp|Q5HRQ2.1|MFD_STAEQ RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|57636714|gb|AAW53502.1| transcription-repair coupling factor [Staphylococcus epidermidis
RP62A]
gi|394231847|gb|EJD77469.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM088]
gi|394262269|gb|EJE07045.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM021]
gi|394282191|gb|EJE26400.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH05005]
gi|394284606|gb|EJE28711.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH05001]
gi|394284963|gb|EJE29056.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH04008]
Length = 1169
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 355/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>gi|227522403|ref|ZP_03952452.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC
8290]
gi|227090461|gb|EEI25773.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC
8290]
Length = 1168
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/556 (41%), Positives = 347/556 (62%), Gaps = 9/556 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
+E K+PR ++KL + W++ K K I+ + DL+ELY R +K YP + ++ E
Sbjct: 545 SEDKKPR-INKLG-GSEWQKTKRKVASKIEDIADDLIELYAKRDAEKGYAYPPDDSLQNE 602
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A+FPY TPDQ ++ +++ D+ E PMDRL+ GDVG+GKTEVALRA F V GKQ
Sbjct: 603 FEARFPYTETPDQLRSADEIKHDM-EHNKPMDRLLVGDVGYGKTEVALRAAFKAVEVGKQ 661
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERFS YP I+V +LSRFQ+ A+ +E L+ +K G ++++VGT
Sbjct: 662 VAFLVPTTILAQQHYETMLERFSDYP-IEVRVLSRFQTTAQIKETLEGLKKGTVDVVVGT 720
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V ++NLGLL++DEEQRFGVK KE+I + VDVLTL+ATPIPRTL +++ G
Sbjct: 721 HRLLSKDVKFSNLGLLIIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIPRTLNMSMMGV 780
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI+ E+ RGGQVFY+ R+ +E+ + L
Sbjct: 781 RDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMARGGQVFYLHNRVADIEKTVSQLS 840
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P IA HGQ Q+E+ + F G +L+ T I+E+G+DI N NT+ V++
Sbjct: 841 ELVPDARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADH 900
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG GF++A +D+
Sbjct: 901 MGLSQLYQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELGSGFKIAMRDL 960
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G+QQ+G V +VG DL+ +ML +++SK V +V++D + LP
Sbjct: 961 SIRGAGNLLGKQQSGFVDSVGYDLYTQMLSDAVSKKRGKNVAFKTDATVELD--LEAYLP 1018
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
S+YI + +E+ + QD L + T+ L ++G + LLK ++ A
Sbjct: 1019 SDYIQDSQQKIEIYKRIRQIENQD--QLNEVTDDLIDRFGDYNEPVANLLKISEMKMYAD 1076
Query: 562 DIGITKIYASGKMVGM 577
I K++ G V +
Sbjct: 1077 KAMIEKVHQDGPRVTL 1092
>gi|418603847|ref|ZP_13167225.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU041]
gi|418606409|ref|ZP_13169687.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU057]
gi|418610278|ref|ZP_13173394.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU065]
gi|418611284|ref|ZP_13174375.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU117]
gi|418616846|ref|ZP_13179769.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU120]
gi|418623723|ref|ZP_13186424.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU125]
gi|418626901|ref|ZP_13189495.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU126]
gi|418628379|ref|ZP_13190926.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU127]
gi|374404817|gb|EHQ75781.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU065]
gi|374406824|gb|EHQ77704.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU041]
gi|374408047|gb|EHQ78887.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU057]
gi|374820434|gb|EHR84522.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU120]
gi|374823722|gb|EHR87715.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU117]
gi|374829757|gb|EHR93553.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU125]
gi|374831141|gb|EHR94888.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU126]
gi|374837844|gb|EHS01406.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU127]
Length = 1166
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 355/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 548 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 605
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 606 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 664
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 665 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 723
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 724 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 783
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 784 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 843
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 844 QLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 903
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 904 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 963
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 964 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1023
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1024 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1081
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1082 HALHAGVELIKDKGKSI 1098
>gi|420208040|ref|ZP_14713521.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM008]
gi|394274783|gb|EJE19191.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM008]
Length = 1169
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEKSPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>gi|385800628|ref|YP_005837032.1| transcription-repair coupling factor [Halanaerobium praevalens DSM
2228]
gi|309389992|gb|ADO77872.1| transcription-repair coupling factor [Halanaerobium praevalens DSM
2228]
Length = 1160
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 227/533 (42%), Positives = 336/533 (63%), Gaps = 13/533 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQK 95
++ W++ K K + +++KM V L+ELY R +PK+ EF FP+E TPDQK
Sbjct: 567 SSDWKKVKEKVQQSVEKMAVGLLELYAERETLTGYQFPKDDVWQKEFEDSFPFEETPDQK 626
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
KA ++ D+ E PMDRL+CGDVG+GKTEVA+RA F A KQ VL PT +LA+QH
Sbjct: 627 KAISALKSDM-ESIKPMDRLLCGDVGYGKTEVAIRAAFKAALASKQTAVLVPTTILAQQH 685
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
++ SER ++P ++VG+LSRF + AE+ + L + G ++I++GTH LL V++ +LG
Sbjct: 686 YNTFSERIEEFP-VRVGILSRFNTAAEQRKTLKRLIKGEIDILIGTHRLLSKDVIFADLG 744
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL++DEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++AL G RD SLI TPP R
Sbjct: 745 LLIIDEEQRFGVTHKEKLKDLKRNVDVLTLTATPIPRTLHMALVGVRDMSLIETPPENRY 804
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
PI+T + + E + SAI+ EL R GQ+++V R+K +E+ LQ+ P IA+AHGQ
Sbjct: 805 PIRTFIKEDNSELITSAIRRELARNGQIYFVHNRVKDIEKTAGKLQKLMPEAKIAVAHGQ 864
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
++LE+ M F Q IL+CT I+E+GLDI N NTII+ + GL+QLYQLRGRVG
Sbjct: 865 MNEKRLEKIMYDFYQQKFDILVCTTIIETGLDIPNVNTIIINHADRMGLSQLYQLRGRVG 924
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R ++ A+AYL Y +L++ A +RL A++E LG GF++A +D+ IRG G + G +Q+
Sbjct: 925 RTNRIAYAYLLYEKDRILAEVAEKRLEAIKEFSSLGSGFKIAMRDLEIRGAGNLLGPEQS 984
Query: 456 GDVGNVGVDLFFEML---FESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPM 512
G + VG L+ ++L E L + I V++D+ ++ +P EYI + +
Sbjct: 985 GHIAAVGFSLYTKLLEGTIEELKGEQQEKNI-----EVEVDLKLDAYIPDEYIKYEARKI 1039
Query: 513 EMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
E+ + KA + L E + R +G+ P + L+ ++ +AA++ I
Sbjct: 1040 EIYKKI-KAIRNEADALDTIDELIDR-FGEPPLEVMRLINISRLKFLAAELNI 1090
>gi|420223783|ref|ZP_14728672.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH08001]
gi|420231038|ref|ZP_14735714.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH04003]
gi|394286747|gb|EJE30732.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH08001]
gi|394295718|gb|EJE39357.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH04003]
Length = 1169
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 355/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>gi|293366145|ref|ZP_06612832.1| transcription-repair coupling factor [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417658410|ref|ZP_12308041.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU045]
gi|417909714|ref|ZP_12553448.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU037]
gi|291319739|gb|EFE60098.1| transcription-repair coupling factor [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329737888|gb|EGG74116.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU045]
gi|341652648|gb|EGS76432.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU037]
Length = 1166
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 355/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 548 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 605
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 606 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 664
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 665 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 723
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 724 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 783
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 784 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 843
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 844 QLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 903
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 904 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 963
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 964 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1023
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1024 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1081
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1082 HALHAGVELIKDKGKSI 1098
>gi|420226238|ref|ZP_14731059.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH06004]
gi|394292462|gb|EJE36205.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH06004]
Length = 1169
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 355/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>gi|417647520|ref|ZP_12297356.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU144]
gi|329723937|gb|EGG60462.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU144]
Length = 1166
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 226/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 548 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 605
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 606 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 664
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 665 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 723
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 724 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 783
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 784 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 843
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 844 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 903
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 904 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 963
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 964 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1023
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + V+
Sbjct: 1024 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEVKV 1081
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1082 HALHAGVELIKDKGKSI 1098
>gi|305665487|ref|YP_003861774.1| transcription-repair coupling factor [Maribacter sp. HTCC2170]
gi|88710243|gb|EAR02475.1| transcription-repair coupling factor [Maribacter sp. HTCC2170]
Length = 1172
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/553 (40%), Positives = 342/553 (61%), Gaps = 17/553 (3%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQK 95
+ AW++ K K K ++++ DL+++Y R +K Y P + E A F YE TPDQ
Sbjct: 554 SAAWKKLKQKTKSRVKQIAFDLIKVYAKRRLEKGFQYDPDSYLQLELEASFIYEDTPDQG 613
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
KA DV++D+ E E PMDRL+CGDVGFGKTEVA+RA F V GKQ +L PT +LA QH
Sbjct: 614 KATEDVKKDM-ESERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAILVPTTILAYQH 672
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
SER + P + V L+RF++ EK E L+ +++G ++II+GTH L+ V + +LG
Sbjct: 673 HRTFSERLKELP-VSVDYLNRFRTAKEKRETLERLENGKVDIIIGTHQLVNKNVKFKDLG 731
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL+VDEEQ+FGV K+K+ S K +VDVLTL+ATPIPRTL +L RD S+I+TPPP R
Sbjct: 732 LLIVDEEQKFGVSVKDKLKSIKENVDVLTLTATPIPRTLQFSLMAARDLSVINTPPPNRY 791
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
PI++++ F++E + A+ YE+ RGGQ+F++ RI+ ++E LQ+ P I I HGQ
Sbjct: 792 PIESNVIRFNEEIIRDAVSYEIQRGGQIFFIHNRIENIKEVAGMLQRLVPDAKIGIGHGQ 851
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
+ ++LE M F G +L+ T IVESGLD+ NANTI + + FGL+ L+Q+RGRVG
Sbjct: 852 KDGKKLEALMLAFMNGEFDVLVSTTIVESGLDVTNANTIFINNANNFGLSDLHQMRGRVG 911
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A Y P +++++A +R+ ALE+ ELG GF +A KD+ IRG G + G +Q+
Sbjct: 912 RSNKKAFCYFITPPYEVMTNEARKRIQALEQFTELGSGFNIAMKDLEIRGAGDLLGGEQS 971
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVI-----------SVPYKSVQIDININPRLPSEY 504
G + +G D + ++L E++ ++ E+ V K QID + P +Y
Sbjct: 972 GFINEIGFDAYQKILAEAIDELKENEFKELYDEVEGHHEKVFVKETQIDTDFELLFPDDY 1031
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
+N++ + + E +++ L +F L ++G+ P + LL + ++ +A IG
Sbjct: 1032 VNNISERLSLYTELNSIKDEE--ALQKFELELVDRFGELPTPVVDLLNSVRIKWIANTIG 1089
Query: 565 ITKIY-ASGKMVG 576
+ K+ K++G
Sbjct: 1090 LEKVVMKQNKLIG 1102
>gi|428181379|gb|EKX50243.1| hypothetical protein GUITHDRAFT_104057 [Guillardia theta CCMP2712]
Length = 555
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/453 (46%), Positives = 309/453 (68%), Gaps = 3/453 (0%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEP 90
L LS W +RK K K ++K+ D+++L R + KR PY +F FP+EP
Sbjct: 101 LDHLSRPEVWTKRKAKAKRTLKKLAHDVIKLQAVRKQNKREPYKMPGHKTDFDDLFPHEP 160
Query: 91 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 150
T DQ KAF D+E+DL R+ PMDRL+CGDVGFGKTEVA+RA+F VS +QA++LAPT V
Sbjct: 161 TADQLKAFRDIEQDLCSRDIPMDRLVCGDVGFGKTEVAMRALFLCVSQQRQAILLAPTTV 220
Query: 151 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV 210
LA QHF V RF + ++ LL+RF + E L + G ++I+VGTH++L S++
Sbjct: 221 LAIQHFRTVQSRFKSF-GLRPALLNRFVPAKTRRELLQQVADGEVDILVGTHAVLSSKIS 279
Query: 211 YNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTP 270
+ +LGL+V+DEEQRFGV QKEK+ + + +DVLTLSATPIPRTL++A++G RD +++ TP
Sbjct: 280 FRSLGLVVIDEEQRFGVNQKEKLKTLSVGIDVLTLSATPIPRTLHMAMSGLRDMTVMRTP 339
Query: 271 PPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIA 330
P + ++TH++ FS+ ++ A++ ELDR GQ F V+PRI +++ + L + P +
Sbjct: 340 PRSKKEVETHVAKFSERLLLKALQLELDRAGQTFCVVPRIADIDQVVATLYRLAPAARVL 399
Query: 331 IAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 390
+AHG+ + LEE + KF++G +L+CT I+ESGLDI ANTI V + FGL+ LYQL
Sbjct: 400 VAHGEL--KDLEERLIKFSEGGADVLVCTPIIESGLDIHTANTIFVFNSHYFGLSSLYQL 457
Query: 391 RGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIF 450
RGRVGR +AHAY +P S LS ++ +RLAA+ LG G++LA++D+ IRG G++
Sbjct: 458 RGRVGRGSTQAHAYFTFPPDSELSSESQQRLAAITRYTSLGSGYELAQRDLEIRGAGSLL 517
Query: 451 GEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVI 483
G +Q+G+ VGV+L+ +ML E +++++E +I
Sbjct: 518 GAEQSGEANEVGVELYMQMLKEIVAEIEEKAII 550
>gi|326803014|ref|YP_004320832.1| transcription-repair coupling factor [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650035|gb|AEA00218.1| transcription-repair coupling factor [Aerococcus urinae
ACS-120-V-Col10a]
Length = 1183
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 238/622 (38%), Positives = 379/622 (60%), Gaps = 14/622 (2%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E K P+ L+K+ T W++ K + I+ + DL++LY R +K + P N A F
Sbjct: 561 EGKSPK-LNKMG-GTEWQKTKQRVSKKIEDIADDLVDLYAERETRKGYAFSPDNEDQAAF 618
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
+FPY T DQ ++ +++ D+ E+E PMDRL+ GDVGFGKTEVA+RA F + GKQ
Sbjct: 619 EDEFPYPETDDQLRSIKEIKADM-EKEKPMDRLLVGDVGFGKTEVAMRAAFKAMLDGKQV 677
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT VLA+QH++ + ERF YP + LLSRF+S AE++ + +K G + +++GTH
Sbjct: 678 AFLVPTTVLAQQHYETMLERFKDYP-FTIDLLSRFRSPAEQKHVIKGLKEGSVQLVIGTH 736
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL + + +LGLLVVDEEQRFGVK KE++ + + +VDVLTL+ATPIPRTL +++ G R
Sbjct: 737 RLLSKDIKFLDLGLLVVDEEQRFGVKAKERLKALRKNVDVLTLTATPIPRTLNMSMMGVR 796
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T++ + + AI+ EL R GQVFY+ ++ ++E +F+++
Sbjct: 797 DLSVIETPPANRFPVQTYVMEQNYGAIRDAIERELARNGQVFYLFNNVQNIQEKANFIEE 856
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +AIAHGQ ++ QLEE + F G +L+ T I+E+G+D+ N NT++V+D +
Sbjct: 857 LVPKARVAIAHGQMHANQLEEVLMDFLAGDDDVLVTTTIIETGIDMPNVNTLLVEDADRM 916
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+++ A+AY Y PDK+ L++ + +RL AL++ ELG GF++A +D+
Sbjct: 917 GLSTLYQLRGRVGRSNRVAYAYFMYRPDKA-LNEASEKRLTALKDFTELGAGFKIAMRDL 975
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G++Q G V +VG DLF +ML E++ K + P +I+++I+ +P
Sbjct: 976 SIRGAGNLLGQEQHGFVNSVGYDLFQQMLDEAIRK-KQGKAAKRPQSPTEIELHIDAYIP 1034
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
SEYI +E+ +D+ + + L ++G+ P ++ LL ++ A
Sbjct: 1035 SEYIQDENQKVEIYKRINLL--EDVDAMWDLDDELLDRFGEPPVEVQWLLAVGAMKSYAT 1092
Query: 562 DIGITKIYASGK---MVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL-LLEL 617
IG+ KI GK +V K ++ ++ ++ + + DQ+ +L +L
Sbjct: 1093 AIGVEKITRKGKAIELVFTKQQNPSQLTPLIFQALEDIPMKLQIKMANDQLVMQLNTKDL 1152
Query: 618 PREQLLNWIFQCLAELYASLPA 639
Q L+++ Q L +L + A
Sbjct: 1153 STYQWLDYLLQFLTQLSKDIAA 1174
>gi|420164597|ref|ZP_14671324.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM095]
gi|420169409|ref|ZP_14676009.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM087]
gi|394231299|gb|EJD76932.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM087]
gi|394231338|gb|EJD76970.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM095]
Length = 1169
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTTKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>gi|420173838|ref|ZP_14680326.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM067]
gi|420182191|ref|ZP_14688331.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM049]
gi|394239358|gb|EJD84802.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM067]
gi|394250433|gb|EJD95621.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM049]
Length = 1169
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKERSPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>gi|418664884|ref|ZP_13226348.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU081]
gi|420170827|ref|ZP_14677384.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM070]
gi|420210556|ref|ZP_14715980.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM003]
gi|421608971|ref|ZP_16050180.1| transcription-repair coupling factor [Staphylococcus epidermidis
AU12-03]
gi|374409979|gb|EHQ80746.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU081]
gi|394239592|gb|EJD85030.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM070]
gi|394276083|gb|EJE20436.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM003]
gi|406655368|gb|EKC81798.1| transcription-repair coupling factor [Staphylococcus epidermidis
AU12-03]
Length = 1169
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>gi|417912752|ref|ZP_12556435.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU109]
gi|341657117|gb|EGS80813.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU109]
Length = 1166
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 548 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 605
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 606 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 664
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 665 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 723
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 724 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 783
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 784 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 843
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 844 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 903
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 904 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 963
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 964 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1023
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1024 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1081
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1082 HALHAGVELIKDKGKSI 1098
>gi|345867410|ref|ZP_08819421.1| transcription-repair coupling factor [Bizionia argentinensis JUB59]
gi|344048078|gb|EGV43691.1| transcription-repair coupling factor [Bizionia argentinensis JUB59]
Length = 1118
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/564 (39%), Positives = 347/564 (61%), Gaps = 22/564 (3%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQ 85
+P + KL + AW+ K K K ++++ +L+++Y R L++ +P + E A
Sbjct: 496 KPPKVYKLG-SKAWKTLKAKTKSRVKEIAFNLIQVYAKRKLERGYQYHPDSHMQHELEAS 554
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ A DV+ D+ E E PMDRL+CGDVGFGKTEVA+RA F V GKQ +L
Sbjct: 555 FIYEDTPDQSTATADVKADM-ESERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAIL 613
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA QH ER ++P + V L+RF++ EK E L ++ G ++II+GTH L+
Sbjct: 614 VPTTILAYQHSRTFRERLKEFP-VTVDYLNRFRTAKEKRETLANLEAGSVDIIIGTHQLV 672
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
V + +LGLL+VDEEQ+FGV KEK+ + K +VDVLTL+ATPIPRTL +L RD S
Sbjct: 673 NKNVKFKDLGLLIVDEEQKFGVAVKEKLKTLKDNVDVLTLTATPIPRTLQFSLMAARDLS 732
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+TPPP R PI++H+ FS+E + A+ YE+ RGGQVF++ RI+ ++E +Q+ P
Sbjct: 733 VITTPPPNRYPIESHVVRFSEETIRDAVTYEIQRGGQVFFIHNRIENIKEVAGLIQRLVP 792
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
I I HGQ ++LE+ M F G +L+ T IVESGLD+ NANTI + + FGL+
Sbjct: 793 DAKIGIGHGQMEGKKLEQLMLAFINGEFDVLVSTTIVESGLDVPNANTIFINNANNFGLS 852
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P+ S +++ A +R+ ALE+ ELG GF +A KD+ IRG
Sbjct: 853 DLHQMRGRVGRSNKKAFCYFITPEYSAMTEDARKRITALEQFSELGSGFNIAMKDLEIRG 912
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV---------PYKSVQIDINI 496
G + G +Q+G + ++G D + ++L E++ ++ + + K + ID +
Sbjct: 913 AGDLLGGEQSGFINDIGFDTYQKILNEAIDELKQTEFADLYEDDGKEKEYVKDITIDSDF 972
Query: 497 NPRLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553
P +Y+N++ + + +NE + AE L++ +R ++G+ P + LL
Sbjct: 973 ELLFPDDYVNNIAERLNLYTKLNEVKTEAE-----LVKLESEIRDRFGEFPTQVVDLLNS 1027
Query: 554 LYVRRMAADIGITKIY-ASGKMVG 576
+ ++ +A +G+ K+ GK++G
Sbjct: 1028 VRIKWVATKMGLEKVVMKQGKLIG 1051
>gi|398309140|ref|ZP_10512614.1| transcription-repair coupling factor [Bacillus mojavensis RO-H-1]
Length = 1177
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/540 (41%), Positives = 344/540 (63%), Gaps = 12/540 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + E
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPDHEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ ++ERF YP + +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETITERFQDYP-MNIGLLSRFRTRKEANETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELEAVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + + +++ +ID+ ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFET-EIDLELDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK----KLYVR 557
YI + ++M A D +Q + + ++G P +E L K+Y R
Sbjct: 1033 ETYIQDGKQKIDMYKRFRSVAAIDEKNELQ--DEMIDRFGNYPKEVEYLFTVAEMKVYAR 1090
>gi|420233644|ref|ZP_14738251.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH051668]
gi|394299774|gb|EJE43305.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH051668]
Length = 1169
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A+ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALDRELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>gi|282875433|ref|ZP_06284305.1| transcription-repair coupling factor [Staphylococcus epidermidis
SK135]
gi|281295790|gb|EFA88312.1| transcription-repair coupling factor [Staphylococcus epidermidis
SK135]
Length = 1169
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>gi|416128130|ref|ZP_11597195.1| transcription-repair coupling factor [Staphylococcus epidermidis
FRI909]
gi|319399660|gb|EFV87914.1| transcription-repair coupling factor [Staphylococcus epidermidis
FRI909]
Length = 1166
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 548 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 605
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 606 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 664
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 665 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 723
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 724 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 783
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 784 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 843
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 844 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 903
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 904 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 963
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 964 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1023
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1024 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1081
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1082 HALHAGVELIKDKGKSI 1098
>gi|417657893|ref|ZP_12307545.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU028]
gi|419770307|ref|ZP_14296389.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-250]
gi|419772650|ref|ZP_14298679.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-K]
gi|329733010|gb|EGG69349.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU028]
gi|383357352|gb|EID34825.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-250]
gi|383359095|gb|EID36530.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-K]
Length = 1166
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 548 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 605
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 606 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 664
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 665 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 723
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 724 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 783
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 784 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 843
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 844 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 903
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 904 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 963
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 964 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1023
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1024 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1081
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1082 HALHAGVELIKDKGKSI 1098
>gi|418413369|ref|ZP_12986610.1| transcription-repair-coupling factor [Staphylococcus epidermidis
BVS058A4]
gi|410879131|gb|EKS26983.1| transcription-repair-coupling factor [Staphylococcus epidermidis
BVS058A4]
Length = 1169
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>gi|251809809|ref|ZP_04824282.1| transcription-repair coupling factor [Staphylococcus epidermidis
BCM-HMP0060]
gi|251806677|gb|EES59334.1| transcription-repair coupling factor [Staphylococcus epidermidis
BCM-HMP0060]
Length = 1166
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 548 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 605
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 606 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 664
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 665 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 723
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 724 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 783
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 784 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 843
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 844 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 903
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 904 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 963
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 964 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1023
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1024 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1081
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1082 HALHAGVELIKDKGKSI 1098
>gi|218134568|ref|ZP_03463372.1| hypothetical protein BACPEC_02471 [[Bacteroides] pectinophilus ATCC
43243]
gi|217989953|gb|EEC55964.1| transcription-repair coupling factor [[Bacteroides] pectinophilus
ATCC 43243]
Length = 1177
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/549 (41%), Positives = 345/549 (62%), Gaps = 15/549 (2%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
+ ++P+ L+KL+ + W + K+K K A++++ DL+ELY R ++ + ++ EF
Sbjct: 563 DARKPK-LNKLN-SQEWGKTKSKVKTAVEQVAKDLVELYAKRQNEQGFQFGEDTVWQREF 620
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPYE T DQ A D + D+ + MDRLICGDVG+GKTEVA+RA F V GKQ
Sbjct: 621 EEMFPYEETSDQLAAIEDTKHDMQSTKI-MDRLICGDVGYGKTEVAIRAAFKAVQDGKQV 679
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ +R +P +KV +LSRF++ E ++ + ++ G ++I++GTH
Sbjct: 680 AYLVPTTILAQQHFNTFEQRMKDFP-VKVAMLSRFRTPKEIKQTIADLRKGMVDIVIGTH 738
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLL++DEEQRFGV KEKI K +VDVLTLSATPIPRTL+++L G R
Sbjct: 739 RLLSKDVEYKDLGLLIIDEEQRFGVSHKEKIKKLKENVDVLTLSATPIPRTLHMSLVGIR 798
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S++ PP +R+PI+T ++ + E V AI EL RGGQV+YV R++ ++E +QQ
Sbjct: 799 DMSVLEEPPVDRMPIQTFVTEQNDEMVREAINRELARGGQVYYVYNRVRNIDEAASRIQQ 858
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P ++A AHGQ + LE M F G I +L+ T I+E+GLDI N NT+I++D +
Sbjct: 859 LVPDANVAYAHGQMDEKTLEAIMYDFINGDIDVLVSTTIIETGLDISNVNTMIIEDAENL 918
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR+++ A+A+L Y +L + A +RL A+ E ELG GF++A KD+
Sbjct: 919 GLSQLYQLRGRVGRSNRTAYAFLLYRRGKMLKEVAEKRLHAIREFTELGSGFKIAMKDLE 978
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G + GE Q G + VG DL+ +ML E+++++ + +++V +D+N++ +PS
Sbjct: 979 IRGAGNVLGEAQHGHMAAVGYDLYCKMLNEAVNEL-KGISNGADFETV-VDLNVDAFIPS 1036
Query: 503 EYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 559
YI +E+ + E + EQ M + L ++G P+S LL ++ +
Sbjct: 1037 TYIRSEAQKLEIYKRIAAIETSDEQ-----MDMQDELTDRFGDLPHSANNLLTIALIKSV 1091
Query: 560 AADIGITKI 568
A + KI
Sbjct: 1092 AHKADVRKI 1100
>gi|78043233|ref|YP_359072.1| transcription-repair coupling factor [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995348|gb|ABB14247.1| transcription-repair coupling factor [Carboxydothermus
hydrogenoformans Z-2901]
Length = 1160
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/547 (40%), Positives = 351/547 (64%), Gaps = 12/547 (2%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA---EFAA 84
P LS+L + W+R K + K A+++M L+ELY R+ +P + +P EF
Sbjct: 559 PPKLSRLGGSD-WQRVKNRVKAAVREMAEGLLELYAKRMA--KPGFAFSPDTVWQKEFEE 615
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
+FPYE TPDQ KA +V+RD+ E+ MDRL+CGDVG+GKTEVALRA F V GKQ V
Sbjct: 616 RFPYEETPDQLKAIEEVKRDM-EKPKVMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAV 674
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
L PT +LA+QH++ ERFS YP +++ LLSRFQ+ E++E + +K G ++I++GTH L
Sbjct: 675 LTPTTLLAQQHYNTFKERFSGYP-VEIRLLSRFQTAREQKEIIKELKRGKVDIVIGTHRL 733
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264
L V + +LGL++VDEEQRFGV QKE++ +VDVLTL+ATPIPRTL++AL G RD
Sbjct: 734 LQDDVQFYDLGLMIVDEEQRFGVAQKERLKILTETVDVLTLTATPIPRTLHMALMGIRDL 793
Query: 265 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 324
S+++TPP R P++T++ + AI+ EL RGGQVF+V R+ ++E ++Q
Sbjct: 794 SVLNTPPENRFPVQTYVLEEDPFIIRDAIRRELGRGGQVFFVHNRVSDIDEVAAWVQSLV 853
Query: 325 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 384
P +A+AHGQ QLE M +F G +L+ T I+E+G+D+ N NT+I+++ +FGL
Sbjct: 854 PEAKVAVAHGQMKEEQLERVMLEFISGKYDVLVSTTIIETGIDLPNVNTLIIKNADRFGL 913
Query: 385 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIR 444
AQLYQLRGRVGR+++ A+AYL Y +L + A +RLAA++E E G G +LA +D+ IR
Sbjct: 914 AQLYQLRGRVGRSNRIAYAYLMYEKDKVLREAAEKRLAAIKEFTEFGSGLKLAMRDLEIR 973
Query: 445 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEY 504
G G + G +Q G + VG D++ ++L E+++++ ++ Q+++N+ +P Y
Sbjct: 974 GAGNLLGPEQHGHIAAVGFDMYMKLLQETVAELKGQ--VTSEEVEPQLELNLTAYIPESY 1031
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
I + +EM + +++ L + L ++G+ P +E L++ + ++ +A+ +
Sbjct: 1032 IPDEKQKIEMYRRLSRT--RNLEDLEDVVDELIDRFGEIPPEVENLIRLIKIKIVASKLK 1089
Query: 565 ITKIYAS 571
+ I+ +
Sbjct: 1090 VKGIFQT 1096
>gi|300114141|ref|YP_003760716.1| transcription-repair coupling factor [Nitrosococcus watsonii C-113]
gi|299540078|gb|ADJ28395.1| transcription-repair coupling factor [Nitrosococcus watsonii C-113]
Length = 1158
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/564 (39%), Positives = 345/564 (61%), Gaps = 9/564 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK-NPAIAEFAAQFPYE 89
L KL ++ WER K K + ++ + +L+ +Y R +K+PP P + A FA FP+E
Sbjct: 552 LHKLG-SSHWERAKHKARERVRDVAAELLAIYAQRAARKKPPLPTPDSHYAAFARAFPFE 610
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ A V DLT + PMDRL+CGDVGFGKTEVA+RA F V AGKQ VL PT
Sbjct: 611 ETPDQADAIQAVIADLTS-DQPMDRLVCGDVGFGKTEVAMRAAFIVSQAGKQVAVLVPTT 669
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH+ +RF+ +P +V ++SRF S+ E+E ++ I G +I++GTH LL +
Sbjct: 670 LLAQQHYQSFKDRFADWP-ARVEVISRFSSRKEQEAVINRIADGRADIVIGTHKLLQENI 728
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ NLGL+++DEE RFGV+QKE++ + + VD+LTL+ATPIPRTL+++L+ RD S+I+T
Sbjct: 729 HFKNLGLVIIDEEHRFGVRQKERMKALRAEVDILTLTATPIPRTLHMSLSNLRDLSIIAT 788
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP RL IKT + ++ + A+ E+ RGGQV+++ ++ + + +Q FP +
Sbjct: 789 PPARRLAIKTFVRQWNDNLLREALLREIKRGGQVYFLHNEVESINKMAQRIQALFPEAKV 848
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
IAHGQ R+LE+TM F IL+CT I+E+G+DI +ANTII+ + GLAQLYQ
Sbjct: 849 GIAHGQMRERELEQTMLNFYHRRFNILVCTTIIETGIDIPSANTIIIHRADKLGLAQLYQ 908
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR+ A+AYL P +S+++ A++RL A+E ELG GF LA DM IRG G +
Sbjct: 909 LRGRVGRSHHRAYAYLIVPPRSVMTADAVKRLEAIESLEELGAGFTLASHDMEIRGAGEL 968
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV---PYKSVQIDININPRLPSEYIN 506
G+ Q+G + +G DL+ ++L +++ + + + P + ++D++ +P +Y+
Sbjct: 969 LGKDQSGQMQEIGFDLYNDLLERAVNSLKSGQALDLEQPPAQGPEVDLHAPALIPEDYLP 1028
Query: 507 HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGIT 566
+ +V AA +D L + + ++G P + + L +R A ++GI
Sbjct: 1029 DVHT--RLVLYKRIAAAKDHQALRELQVEMIDRFGLLPEATKTLFATHKLRLNANEMGIR 1086
Query: 567 KIYASGKMVGMKTNMNKKVFKMMI 590
KI AS + + KV M+I
Sbjct: 1087 KIEASSQGGRIHFQPEPKVDPMVI 1110
>gi|418324996|ref|ZP_12936207.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU071]
gi|365229058|gb|EHM70226.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU071]
Length = 1166
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 548 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 605
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 606 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 664
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 665 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 723
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 724 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 783
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 784 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 843
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 844 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 903
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 904 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 963
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 964 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1023
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1024 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1081
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1082 HALHAGVELIKDKGKSI 1098
>gi|325286644|ref|YP_004262434.1| transcription-repair coupling factor [Cellulophaga lytica DSM 7489]
gi|324322098|gb|ADY29563.1| transcription-repair coupling factor [Cellulophaga lytica DSM 7489]
Length = 1113
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 227/562 (40%), Positives = 343/562 (61%), Gaps = 17/562 (3%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQ 85
+P + KL + AW++ K K K ++++ DL+++Y +R +K Y P + E A
Sbjct: 491 KPPKIFKLG-SGAWKKLKQKTKTRVKQIAFDLIKVYANRRLKKGFKYAPDSYLQHELEAS 549
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ KA D+++D+ E + PMDRLICGDVGFGKTEVA+RA F V GKQ VL
Sbjct: 550 FIYEDTPDQSKATEDLKKDM-ESDRPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAVL 608
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA QH +ER P + V ++RF++ EK E L+ + G ++II+GTH L+
Sbjct: 609 VPTTILAFQHHKTFAERLKDMP-VTVDYVNRFRTAKEKRETLERLAEGKVDIIIGTHQLV 667
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
VV+ +LGLL+VDEEQ+FGV K+K+ S K +VDVLTL+ATPIPRTL +L RD S
Sbjct: 668 NKNVVFKDLGLLIVDEEQKFGVAVKDKLKSIKENVDVLTLTATPIPRTLQFSLMAARDLS 727
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
I+T PP R PI +H+ F+++ + A+ YE+ RGGQVF++ RI+ ++E LQ+ P
Sbjct: 728 TINTAPPNRYPIDSHVVRFTEDTIRDAVSYEIQRGGQVFFIHNRIENIKEVAGMLQRLVP 787
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
I I HGQ ++LE M F G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 788 DAKIGIGHGQMDGKKLETLMLAFMNGEFDVLVSTTIIESGLDVPNANTIFINNANNFGLS 847
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P +S+ A +R+ ALE+ ELG GF +A KD+ IRG
Sbjct: 848 DLHQMRGRVGRSNKKAFCYFITPPYDSMSNDARKRIQALEQFTELGSGFNIAMKDLEIRG 907
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS----------VPYKSVQIDIN 495
G I G +Q+G + +G D + ++L E++ ++ E+ V K QID +
Sbjct: 908 AGDILGGEQSGFINEIGFDAYQKILAETVEELKENEFKDLYEEVEGKDKVFVKETQIDSD 967
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
P +Y+N++ + + + + ++ L ++ + L ++G+ P +E LL +
Sbjct: 968 FELLFPDDYVNNVTERLNLYTQLNQITTEE--GLAKYEKELVDRFGEIPSPVEDLLNSVR 1025
Query: 556 VRRMAADIGITKIY-ASGKMVG 576
++ +A +G+ KI GKM+G
Sbjct: 1026 IKWIANSLGLEKIVLKKGKMIG 1047
>gi|148262223|ref|YP_001228929.1| transcription-repair coupling factor [Geobacter uraniireducens Rf4]
gi|146395723|gb|ABQ24356.1| transcription-repair coupling factor [Geobacter uraniireducens Rf4]
Length = 1159
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/539 (42%), Positives = 338/539 (62%), Gaps = 11/539 (2%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
WE+ K + + AIQ+M +L+++Y R ++ + P++ EF A F +E TPDQ+
Sbjct: 569 AGWEKTKARARAAIQEMAGELLKIYAARQVEEGHAFSPQDELYQEFEASFAFEETPDQQA 628
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A DV D+ E + PMDRL+CGDVG+GKTEVA+R F V GKQ +L PT +LA+QH
Sbjct: 629 AIEDVLHDM-ESKRPMDRLVCGDVGYGKTEVAMRGAFKAVMDGKQVALLVPTTILAQQHM 687
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ +ERF YP +KV +LSRF+S E++ L+ +K G ++II+GTH LL VV+ +LGL
Sbjct: 688 ETFAERFKAYP-VKVEMLSRFRSAKEQKAILEGVKKGEVDIIIGTHRLLQKDVVFKDLGL 746
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L++DEEQRFGV KE++ F+ VD++TL+ATPIPRTLY++L G RD S+I TPP +RL
Sbjct: 747 LIIDEEQRFGVSHKERLKQFRAVVDIMTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLA 806
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
IKT ++ S E + A+ EL RGGQVF+V R++ + + LQQ P IA+ HGQ
Sbjct: 807 IKTFVARSSDELIREAVLRELRRGGQVFFVHNRVQTIGAMAEHLQQIVPEARIAVGHGQM 866
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
++LE M F G +L+CT I+ESGLDI ANT+IV FGL+QLYQLRGRVGR
Sbjct: 867 DEKELERVMLGFMHGETNLLLCTTIIESGLDIPTANTLIVSRADTFGLSQLYQLRGRVGR 926
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ + A+AYL P + +S A ERL ++E ELG GF++A D+ IRG G + G +Q+G
Sbjct: 927 SKQRAYAYLLIPGEGAISADARERLKIIQELTELGAGFRIATHDLEIRGAGDLLGARQSG 986
Query: 457 DVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPSEYINHLENPMEMV 515
D+ VG +L+ E+L E++ ++ E V +I + I +P +Y+ + +
Sbjct: 987 DIAAVGFELYTELLEEAIRQLKGEELAERV---EPEIKLRIPAFVPEDYVREPNQRLIIY 1043
Query: 516 NEAEKA-AEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
+ +A +E+DI +M L ++GK P + LL+ + +R + + +I GK
Sbjct: 1044 KKLSQATSEEDIGEIMA---ELVDRFGKLPLAATYLLEVMRLRVTLKAMLVKEIEFDGK 1099
>gi|344202966|ref|YP_004788109.1| transcription-repair coupling factor [Muricauda ruestringensis DSM
13258]
gi|343954888|gb|AEM70687.1| transcription-repair coupling factor [Muricauda ruestringensis DSM
13258]
Length = 1152
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 227/562 (40%), Positives = 344/562 (61%), Gaps = 18/562 (3%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQF 86
P + KL + AW++ K K K ++K+ DL+++Y R +K Y P + E A F
Sbjct: 518 PPKIFKLG-SAAWKKLKQKTKARVKKIAFDLIKVYAKRRLEKGFQYAPDSYLQHELEASF 576
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
YE TPDQ+K+ DV++D+ E E PMDRLICGDVGFGKTEVA+RA F V GKQ +L
Sbjct: 577 LYEDTPDQEKSTQDVKKDM-ESERPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAILV 635
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA QH SER + P + V L+RF++ EK E L+ ++ G ++II+GTH L+
Sbjct: 636 PTTILAFQHHRTFSERLKEMP-VTVDYLNRFRTAKEKRETLENLESGKVDIIIGTHQLVN 694
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
V + +LGLL+VDEEQ+FGV KEK+ S K +VDVLTL+ATPIPRTL +L RD S+
Sbjct: 695 KNVKFKDLGLLIVDEEQKFGVSVKEKLRSIKENVDVLTLTATPIPRTLQFSLMAARDLSV 754
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPPP R PI++H+ ++E + A+ YE+ RGGQVF++ RI+ ++E LQ+ P
Sbjct: 755 INTPPPNRYPIESHVIRLNEEIIRDAVSYEIQRGGQVFFIHNRIENIKEVAGMLQRLVPD 814
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
I I HGQ ++LE M F G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 815 AKIGIGHGQMEGKKLENLMLSFMNGEFDVLVSTTIIESGLDVTNANTIFIHNANNFGLSD 874
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+Q+RGRVGR++K+A Y P +++ +A +R+ ALE+ ELG GF +A KD+ IRG
Sbjct: 875 LHQMRGRVGRSNKKAFCYFITPPYEVMTTEARKRIEALEQFTELGSGFNIAMKDLEIRGA 934
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS-----------VPYKSVQIDIN 495
G + G +Q+G + +G + + ++L E++ ++ E+ V K +Q+D +
Sbjct: 935 GDLLGGEQSGFINEIGFETYQKILAEAIDELKENEFKELYEEVEGGKEKVYVKEMQLDTD 994
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
P +YIN++ + + + +++ L +F L ++G+ P + L+ +
Sbjct: 995 FELLFPDDYINNITERLNLYTQLNDVEDEE--GLQKFEAQLVDRFGELPEPVVDLMNSVR 1052
Query: 556 VRRMAADIGITK-IYASGKMVG 576
++ +A IG+ K I GK +G
Sbjct: 1053 IKWIATHIGLEKVIMKKGKFIG 1074
>gi|420212966|ref|ZP_14718308.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM001]
gi|394277468|gb|EJE21791.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM001]
Length = 1169
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPVNKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEKSPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>gi|420198407|ref|ZP_14704119.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM020]
gi|420228656|ref|ZP_14733403.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH05003]
gi|394264486|gb|EJE09170.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM020]
gi|394294540|gb|EJE38217.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH05003]
Length = 1169
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 353/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEKSPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKNELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>gi|289579379|ref|YP_003478006.1| transcription-repair coupling factor [Thermoanaerobacter italicus
Ab9]
gi|289529092|gb|ADD03444.1| transcription-repair coupling factor [Thermoanaerobacter italicus
Ab9]
Length = 1163
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 233/558 (41%), Positives = 349/558 (62%), Gaps = 14/558 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFA 83
T P L+KL + W + K K K A++ + DL++LY R K + P P EF
Sbjct: 560 TDNPPKLNKLG-GSEWLKAKRKAKKAVEDLAKDLIQLYAKRQIAKGHAFSPDTPWQREFE 618
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
QFPYE T DQ + +++ D+ E++ PMDRL+CGDVG+GKTEVALRA F V+ GKQ
Sbjct: 619 EQFPYEETEDQLRCIKEIKEDM-EKDKPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVA 677
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
L PT +LA QH+ ERF ++P +K+ +LSRF++ E+ + + + G ++IIVGTH
Sbjct: 678 FLCPTTILAYQHYTNFMERFKEFP-VKIEMLSRFRTPKEQAQIIKGLAEGTIDIIVGTHR 736
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LL + V + +LGLL++DEEQRFGV KEKI K ++DVLTLSATPIPRTL+++L G RD
Sbjct: 737 LLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLIGIRD 796
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S++ PP +R P++T++ F++E + AI E+ RGGQV++V R+ G+E+ ++
Sbjct: 797 MSVLENPPEDRFPVETYVVEFNEELIKDAILREIGRGGQVYFVYNRVNGIEKMASLVKDL 856
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
PG +A+AHGQ QLE+ M F G +L+ T I+E+GLDI N NTIIV D + G
Sbjct: 857 VPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLG 916
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E E G GF++A +D+ I
Sbjct: 917 LSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMRDLEI 976
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININPRLP 501
RG G + G +Q G +G +G DL+ ++L E++ + P + + IDI +N +
Sbjct: 977 RGAGNLLGAEQHGHIGAIGYDLYLKLLEEAIRNLKGEA----PKEEITTTIDIKVNAYID 1032
Query: 502 SEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
S YI +EM + A + +D +++ +E L ++G +E LL+ Y++ +A
Sbjct: 1033 SSYIEDENLRLEMYKKIASIESRED---MVEISEELVDRFGDYSKPVEALLEIAYLKVIA 1089
Query: 561 ADIGITKIYASGKMVGMK 578
+ IT+I G V +K
Sbjct: 1090 SKANITEITEKGNTVILK 1107
>gi|121535095|ref|ZP_01666912.1| transcription-repair coupling factor [Thermosinus carboxydivorans
Nor1]
gi|121306345|gb|EAX47270.1| transcription-repair coupling factor [Thermosinus carboxydivorans
Nor1]
Length = 1109
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/535 (42%), Positives = 341/535 (63%), Gaps = 10/535 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFPYEPTPDQ 94
T W++ ++ K A+ + +L+ LY R Q P + P P EF FPYE TPDQ
Sbjct: 498 TEWQKATSRAKAAVADLAKELIALYAAR--QVTPGFAFEPDTPWQKEFEEAFPYEETPDQ 555
Query: 95 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 154
+A +++RD+ E PMDRL+CGDVGFGKTEVA+RA F V +GKQ VL PT VLA+Q
Sbjct: 556 LQAISEIKRDM-EAPRPMDRLLCGDVGFGKTEVAIRAAFKAVMSGKQVAVLVPTTVLAQQ 614
Query: 155 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNL 214
H+ S RF+ + + V ++SRF+S E++ L ++ G +++++GTH LL V + +L
Sbjct: 615 HYQTFSSRFAGFGPV-VDVISRFRSPKEQKATLAKVRAGQVDVLIGTHRLLNPDVQFKDL 673
Query: 215 GLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER 274
GLL+VDEEQRFGV QKEK+ ++ ++DVLTLSATPIPRTL+++L G RD S+I TPP ER
Sbjct: 674 GLLIVDEEQRFGVAQKEKLKKWRTNIDVLTLSATPIPRTLHMSLVGARDMSIIETPPEER 733
Query: 275 LPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHG 334
P++T++ + +E V AI+ EL RGGQV++V R++ +++ L + P I +AHG
Sbjct: 734 YPVQTYVVEYHEEVVRDAIRRELRRGGQVYFVYNRVQTIDKMHSRLSEILPDARIGVAHG 793
Query: 335 QQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRV 394
Q +LE M F +G IL+CT+I+ESGLD+ NANTIIV D +FGLAQLYQ+RGRV
Sbjct: 794 QMSEDRLERVMLDFYEGNYDILVCTSIIESGLDVPNANTIIVYDADKFGLAQLYQMRGRV 853
Query: 395 GRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQ 454
GR + A+AY Y +L++ A +RL A++E ELG GF++A +D+ IRG G I G QQ
Sbjct: 854 GRTHRMAYAYFTYQRDKVLTEVAEKRLQAIKEFAELGAGFKIAMRDLEIRGAGNILGPQQ 913
Query: 455 TGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEM 514
G + +VG +++ +L E++ ++ V+ P + V ++ N++ L +YI+ + +E+
Sbjct: 914 HGHILSVGFEMYCRLLDEAVQELRTGKVVQPPPEPV-LEFNVDAYLSGDYISDAMHKIEV 972
Query: 515 VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
AA + + + + L ++G+ P ++ L ++ A +GI I+
Sbjct: 973 YQRI--AAIRTEEHISELVDELIDRFGEPPQPVQNLFMVARIKNYARVLGIRSIF 1025
>gi|418030599|ref|ZP_12669084.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|351471658|gb|EHA31771.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. SC-8]
Length = 1177
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/541 (41%), Positives = 342/541 (63%), Gaps = 12/541 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + E
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPDHEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 616 FESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETIKERFQDYP-INIGLLSRFRTRKEANETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + + +++ +ID+ ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFET-EIDVELDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK----KLYVR 557
YI + ++M A I + + + ++G P +E L K+Y R
Sbjct: 1033 ETYIQDGKQKIDMYKRFRSVA--TIEEKNELQDEMIDRFGNYPKEVEYLFTVAEMKVYAR 1090
Query: 558 R 558
+
Sbjct: 1091 Q 1091
>gi|430757320|ref|YP_007211204.1| Mfd (Mutation frequency decline) protein [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|430021840|gb|AGA22446.1| Mfd (Mutation frequency decline) protein [Bacillus subtilis subsp.
subtilis str. BSP1]
Length = 1177
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/541 (41%), Positives = 342/541 (63%), Gaps = 12/541 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + E
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPDHEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 616 FESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETIKERFQDYP-INIGLLSRFRTRKEANETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + + +++ +ID+ ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFET-EIDVELDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK----KLYVR 557
YI + ++M A I + + + ++G P +E L K+Y R
Sbjct: 1033 ETYIQDGKQKIDMYKRFRSVA--TIEEKNELQDEMIDRFGNYPKEVEYLFTVAEMKVYAR 1090
Query: 558 R 558
+
Sbjct: 1091 Q 1091
>gi|410726038|ref|ZP_11364298.1| transcription-repair coupling factor Mfd [Clostridium sp. Maddingley
MBC34-26]
gi|410601470|gb|EKQ55981.1| transcription-repair coupling factor Mfd [Clostridium sp. Maddingley
MBC34-26]
Length = 1166
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 239/615 (38%), Positives = 379/615 (61%), Gaps = 14/615 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K P+ ++KL + W++ K K + +I ++ DL++LY R K +PK+ +
Sbjct: 560 SEGKSPK-VNKLG-SAEWQKAKAKARKSINEIAEDLVKLYAMRSTVKGHKFPKDTEWQKQ 617
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F +FP+E TPDQ + +++ D+ E + PMDRL+CGDVG+GKTEVALRA F V GKQ
Sbjct: 618 FEDEFPFEETPDQLTSLEEIKYDM-ESDKPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQ 676
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH+ + RFS +P IK+ ++SRF++ +++E L +K G+L+I++GT
Sbjct: 677 VAILVPTTILAEQHYKNIKNRFSDFP-IKIDMVSRFRTAKQQKEILQKVKEGNLDILIGT 735
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H L+ + + +LGLL+VDEEQRFGVKQKE+I K +VDVLTLSATPIPRTL+++L+G
Sbjct: 736 HRLVSKDIQFKDLGLLIVDEEQRFGVKQKEQIKGIKKNVDVLTLSATPIPRTLHMSLSGV 795
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP ER P++T++ + + + AI E+ RGGQV++V R++ +E ++Q
Sbjct: 796 RDISVIETPPEERYPVQTYVVEQNDQLIRDAILREIGRGGQVYFVYNRVEDIERMAKYVQ 855
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + +AHGQ RQLE+ M F +L+CT I+E+G+DIQN NTII+ D +
Sbjct: 856 ALVPESKVGVAHGQMAERQLEKEMYDFMSEEYNVLVCTTIIETGMDIQNVNTIIIYDADK 915
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AYL Y +L++ A +RL AL++ ELG GF++A +D+
Sbjct: 916 MGLSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEIAEKRLKALKDFTELGSGFKIAMRDL 975
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G Q G + ++G DL+ ML E K+ + + P ++ +DI ++ +
Sbjct: 976 EIRGAGNMMGSSQHGHMASIGYDLYCRML-EDTVKLLKGEIQKEPIETT-LDIKVDAFIS 1033
Query: 502 SEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
N++E+ ++ + +K AA + I E L +Y K P + L+ Y++ A
Sbjct: 1034 E---NYIEDEIQKIEVYKKIAAIEGIDDYNDIKEELEDRYSKIPEPVYNLMDIAYIKSQA 1090
Query: 561 ADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNS--LTFEGDQIKAELLLELP 618
I I +I + K + K + +K + + ++NS L F D A L +
Sbjct: 1091 KSIFIEEIKETPKEILFKFAQGESDYKNTFKILMYK-YKNSVVLKFGTDPYFAFKLKHIK 1149
Query: 619 REQLLNWIFQCLAEL 633
+E L ++ + ++
Sbjct: 1150 KENKLEFLKEVFNDI 1164
>gi|16077123|ref|NP_387936.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. 168]
gi|221307865|ref|ZP_03589712.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312187|ref|ZP_03593992.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317120|ref|ZP_03598414.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321383|ref|ZP_03602677.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402774298|ref|YP_006628242.1| transcription-repair coupling factor [Bacillus subtilis QB928]
gi|452912981|ref|ZP_21961609.1| transcription-repair coupling factor [Bacillus subtilis MB73/2]
gi|585481|sp|P37474.1|MFD_BACSU RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|467444|dbj|BAA05290.1| transcription-repair coupling factor [Bacillus subtilis]
gi|2632322|emb|CAB11831.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. 168]
gi|402479484|gb|AFQ55993.1| Transcription-repair coupling factor [Bacillus subtilis QB928]
gi|407955746|dbj|BAM48986.1| transcription-repair coupling factor [Bacillus subtilis BEST7613]
gi|407963017|dbj|BAM56256.1| transcription-repair coupling factor [Bacillus subtilis BEST7003]
gi|452118009|gb|EME08403.1| transcription-repair coupling factor [Bacillus subtilis MB73/2]
Length = 1177
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/541 (41%), Positives = 342/541 (63%), Gaps = 12/541 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + E
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPDHEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 616 FESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETIKERFQDYP-INIGLLSRFRTRKEANETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + + +++ +ID+ ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFET-EIDVELDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK----KLYVR 557
YI + ++M A I + + + ++G P +E L K+Y R
Sbjct: 1033 ETYIQDGKQKIDMYKRFRSVA--TIEEKNELQDEMIDRFGNYPKEVEYLFTVAEMKVYAR 1090
Query: 558 R 558
+
Sbjct: 1091 Q 1091
>gi|428277470|ref|YP_005559205.1| transcription-repair coupling factor [Bacillus subtilis subsp. natto
BEST195]
gi|449092768|ref|YP_007425259.1| transcription-repair coupling factor [Bacillus subtilis XF-1]
gi|291482427|dbj|BAI83502.1| transcription-repair coupling factor [Bacillus subtilis subsp. natto
BEST195]
gi|449026683|gb|AGE61922.1| transcription-repair coupling factor [Bacillus subtilis XF-1]
Length = 1177
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/541 (41%), Positives = 342/541 (63%), Gaps = 12/541 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + E
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPDHEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 616 FESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETIKERFQDYP-INIGLLSRFRTRKEANETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + + +++ +ID+ ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFET-EIDVELDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK----KLYVR 557
YI + ++M A I + + + ++G P +E L K+Y R
Sbjct: 1033 ETYIQDGKQKIDMYKRFRSVA--TIEEKNELQDEMIDRFGNYPKEVEYLFTVAEMKVYAR 1090
Query: 558 R 558
+
Sbjct: 1091 Q 1091
>gi|321313725|ref|YP_004206012.1| transcription-repair coupling factor [Bacillus subtilis BSn5]
gi|320019999|gb|ADV94985.1| transcription-repair coupling factor [Bacillus subtilis BSn5]
Length = 1177
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/541 (41%), Positives = 342/541 (63%), Gaps = 12/541 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + E
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPDHEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 616 FESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETIKERFQDYP-INIGLLSRFRTRKEANETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + + +++ +ID+ ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFET-EIDVELDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK----KLYVR 557
YI + ++M A I + + + ++G P +E L K+Y R
Sbjct: 1033 ETYIQDGKQKIDMYKRFRSVA--TIEEKNELQDEMIDRFGNYPKEVEYLFTVAEMKVYAR 1090
Query: 558 R 558
+
Sbjct: 1091 Q 1091
>gi|319953407|ref|YP_004164674.1| transcription-repair coupling factor [Cellulophaga algicola DSM
14237]
gi|319422067|gb|ADV49176.1| transcription-repair coupling factor [Cellulophaga algicola DSM
14237]
Length = 1125
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 231/563 (41%), Positives = 339/563 (60%), Gaps = 19/563 (3%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQF 86
P + KL + AW++ K K K ++K+ DL+++Y R K Y P E A F
Sbjct: 496 PPKIYKLG-SGAWKKVKEKAKSRVKKIAFDLIQIYAKRRTLKGFQYAPDGYLQHELEASF 554
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
YE TPDQ KA D++RD+ E E PMDRLICGDVGFGKTEVA+RA F V+ GKQ VL
Sbjct: 555 IYEDTPDQSKATEDIKRDM-ESERPMDRLICGDVGFGKTEVAIRAAFKAVANGKQVAVLV 613
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA QH ER P + V L+RF++ EK++ L+ ++ G ++II+GTH L+
Sbjct: 614 PTTILAFQHNRTFKERLKDMP-VTVDYLNRFRTTKEKKDTLERLEAGKVDIIIGTHQLVN 672
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
V + +LGLL+VDEEQ+FGV K+K+ S K +VDVLTL+ATPIPRTL +L RD S+
Sbjct: 673 KNVKFKDLGLLIVDEEQKFGVAVKDKLKSIKENVDVLTLTATPIPRTLQFSLMAARDLSV 732
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+T PP R PI++ + FS+E + A+ YE+ RGGQVF++ R++ ++E +Q+ P
Sbjct: 733 INTAPPNRYPIQSDVIRFSEETIRDAVSYEIQRGGQVFFIHNRVENIKEVAGLIQRLVPD 792
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
I I HGQ ++LE M F G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 793 AKIGIGHGQMEGKKLEILMLAFINGEFDVLVSTTIIESGLDVSNANTIFINNANNFGLSD 852
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+Q+RGRVGR++K+A Y P +++ A +R+ ALE+ ELG GF +A KD+ IRG
Sbjct: 853 LHQMRGRVGRSNKKAFCYFITPPYEVMTSDARKRIEALEQFTELGSGFNIAMKDLEIRGA 912
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDE------------HCVISVPYKSVQIDI 494
G I G +Q+G + ++G D + ++L E++ ++ E H V K QID
Sbjct: 913 GDILGGEQSGFINDIGFDAYQKILAEAVEELKENEFKDLYEEIEGHTHEKVFVKETQIDA 972
Query: 495 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+ P +YIN++ + + +++ L +F L ++G+ P E LL +
Sbjct: 973 DFELLFPDDYINNITERLNLYTALNLITDEE--GLKKFELDLIDRFGELPIEAEDLLNSV 1030
Query: 555 YVRRMAADIGITKIY-ASGKMVG 576
++ +A IG+ KI GKM+G
Sbjct: 1031 RIKWIANAIGLEKIVMKQGKMIG 1053
>gi|392423514|ref|YP_006464508.1| transcription-repair coupling factor Mfd [Desulfosporosinus
acidiphilus SJ4]
gi|391353477|gb|AFM39176.1| transcription-repair coupling factor Mfd [Desulfosporosinus
acidiphilus SJ4]
Length = 1175
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/542 (41%), Positives = 341/542 (62%), Gaps = 7/542 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYEPTPDQKK 96
T W + K+K + A+++M DL++LY R Q P N EF +FPY T DQ +
Sbjct: 573 TEWHKVKSKTRSAVKEMAFDLLKLYAQREATQGYAFAPDNVWQVEFEEKFPYVETDDQLQ 632
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
DV+RD+ PMDRL+CGDVG+GKTEVALRA+F V GKQ L PT +LA+QHF
Sbjct: 633 CIADVKRDMM-LPRPMDRLLCGDVGYGKTEVALRAVFKAVMDGKQVAFLVPTTILAQQHF 691
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ + ERF+ YP I + +LSRF+S E++E + +K G +++IVGTH +L V + +LGL
Sbjct: 692 NTLRERFTGYP-ITIDVLSRFRSSKEQKEIIQGLKEGRIDVIVGTHRILADAVKFKDLGL 750
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L++DEEQRFGV KEK+ + K +VDVLTLSATPIPRTL+++L G RD S+I TPP R P
Sbjct: 751 LIIDEEQRFGVAHKEKLKTIKGNVDVLTLSATPIPRTLHMSLVGVRDMSVIETPPEGRYP 810
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T+++ F + V AI+ E+ RGGQVF+V R++ +++ DFL Q P +AHGQ
Sbjct: 811 VQTYVTEFRPDVVRDAIRREIQRGGQVFFVHNRVEDMDKVTDFLSQLVPEARFGVAHGQM 870
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
LE M F + +L+ T I+E+GLD+ N NT+I+ + + GL+QLYQLRGRVGR
Sbjct: 871 RETMLERVMLDFLEQQTDVLVSTTIIETGLDMPNVNTLIIDEADRMGLSQLYQLRGRVGR 930
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
++++A+AYL Y + +L++ A +RLAA+ E E G GF++A +D+ IRG G + G QQ G
Sbjct: 931 SNRKAYAYLLYKPQKVLTEVAEKRLAAIREFTEFGAGFKIAMRDLEIRGAGNLIGAQQHG 990
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ VG +L+ +ML E++ ++ V S I++ ++ LP Y++ + +
Sbjct: 991 HLAAVGFELYSQMLKEAVLELRGEKVEEAAEPS--IELQVDAFLPDAYVSDKQTKASLYQ 1048
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVG 576
K A + L + + L ++G P +E L++ + ++ +A + I +I + + V
Sbjct: 1049 RLAKVANEA--ELEEMVDELVDRFGTPPREVEHLIQIIRIKLLAGVLRIEQIQQTKQNVS 1106
Query: 577 MK 578
++
Sbjct: 1107 LR 1108
>gi|283768938|ref|ZP_06341847.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus H19]
gi|283461119|gb|EFC08205.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus H19]
Length = 1168
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 226/562 (40%), Positives = 356/562 (63%), Gaps = 13/562 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---VQIDIN 495
+D+ IRG G + G+QQ G + VG DL+ +ML E+ V+E I P V++D+N
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEA---VNEKRGIKEPESDVPEVEVDLN 1022
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
++ LP+EYI + + +E+ + K D ++ + L ++ P + LL +
Sbjct: 1023 LDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVE 1080
Query: 556 VRRMAADIGITKIYASGKMVGM 577
++ A GIT I GK++ +
Sbjct: 1081 IKVHALHSGITLIKDKGKIIDI 1102
>gi|456012106|gb|EMF45823.1| Transcription-repair coupling factor [Planococcus halocryophilus Or1]
Length = 1161
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/557 (40%), Positives = 350/557 (62%), Gaps = 8/557 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
+E K P+ L K+ W++ +TK A+Q + DL++LY R + + + + +
Sbjct: 558 SEEKEPK-LHKMGGA-EWKKTRTKVSAAVQDIADDLIKLYAEREALRGFAFSEEQDMQRQ 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A+FPYE T DQ ++ +V+RD+ E E PMDRLICGDVG+GKTEVA+RA F V GKQ
Sbjct: 616 FEAEFPYEETVDQLRSINEVKRDM-ENERPMDRLICGDVGYGKTEVAIRAGFKAVLDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QHF+ +SERF YP I VGL+SRF+SK ++ E + +K+G ++I+VGT
Sbjct: 675 VAFLVPTTILAQQHFETMSERFKDYP-ITVGLMSRFRSKKQQTETVKGLKNGSVDIVVGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRILSKDMQYKDLGLLIIDEEQRFGVTHKEKIKQMKTNVDVLTLTATPIPRTLHMSMIGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P+++++ + V AI+ E+ RGGQVFY+ R+ + ++ +Q
Sbjct: 794 RDLSVIETPPANRFPVQSYVMEHNGALVREAIEREMARGGQVFYLYNRVDDMTRKVEEIQ 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
Q P + AHGQ +LE + F G +L+ T I+E+G+DI N NT+IV + +
Sbjct: 854 QLVPEARVGYAHGQMSETELESVILSFLDGDYDVLVTTTIIETGIDIPNVNTLIVYNADR 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+ + A+AY Y +L+D A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSSRVAYAYFMYQRDKVLTDVAEKRLMAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + + V ++I ++++ +P
Sbjct: 974 TIRGAGNLLGSQQHGFIDSVGFDLYSQMLQEAIDE-RQTGVKKEVIPEIEISLDVDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI+ ++M + ++ + + + L ++G P + LL+ ++ A
Sbjct: 1033 DAYISDGYQKIQMYKRVKGIETEE--EMRELQDELIDRFGDMPTETDSLLRIARMKVWAR 1090
Query: 562 DIGITKIYASGKMVGMK 578
++G+ + +GK+V ++
Sbjct: 1091 EVGVESLKQNGKLVSVR 1107
>gi|27469198|ref|NP_765835.1| transcription-repair coupling factor [Staphylococcus epidermidis ATCC
12228]
gi|81842450|sp|Q8CMT1.1|MFD_STAES RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|27316747|gb|AAO05922.1|AE016751_217 transcription-repair coupling factor [Staphylococcus epidermidis ATCC
12228]
Length = 1169
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL ++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQTIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>gi|389819104|ref|ZP_10209145.1| transcription-repair coupling factor [Planococcus antarcticus DSM
14505]
gi|388463519|gb|EIM05871.1| transcription-repair coupling factor [Planococcus antarcticus DSM
14505]
Length = 1177
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/561 (40%), Positives = 350/561 (62%), Gaps = 8/561 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
+E K P+ L K+ T W++ +TK A+Q + DL++LY R + + + + +
Sbjct: 558 SEEKEPK-LHKMGGT-EWKKTRTKVSAAVQDIADDLIKLYAEREALRGFAFSEEQDMQRQ 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A+FPYE T DQ ++ +V+RD+ E E PMDRLICGDVG+GKTEVA+R F V GKQ
Sbjct: 616 FEAEFPYEETVDQLRSINEVKRDM-ENERPMDRLICGDVGYGKTEVAIRGAFKAVLDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QHF+ +SERF YP I VGL+SRF+SK ++ E + +K+G +++++GT
Sbjct: 675 VAFLVPTTILAQQHFETMSERFKDYP-ITVGLMSRFRSKKQQTETVKGLKNGSVDVVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRILSKDMQYKDLGLLIIDEEQRFGVTHKEKIKQMKTNVDVLTLTATPIPRTLHMSMMGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P+++++ + V AI+ E+ RGGQVFY+ R+ + ++ +Q
Sbjct: 794 RDLSVIETPPANRFPVQSYVMEHNGALVREAIEREMARGGQVFYLYNRVDDMTRKVEEIQ 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHGQ +LE + F G +L+ T I+E+G+DI N NT+IV + +
Sbjct: 854 SLVPEARVGYAHGQMNETELESVILSFLDGDYDVLVTTTIIETGIDIPNVNTLIVYNADR 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+ + A+AY Y +L+D A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSSRVAYAYFMYQRDKVLTDVAEKRLMAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + + V ++I ++I+ +P
Sbjct: 974 TIRGAGNLLGSQQHGFIDSVGFDLYSQMLQEAIDE-RQSGVKKEVIPEIEISLDIDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
Y++ ++M + ++ +Q + L ++G P + LL+ ++ A
Sbjct: 1033 DSYVSDGYQKIQMYKRVKGVDTEEEMTELQ--DELIDRFGDMPNETDSLLRIARMKVWAR 1090
Query: 562 DIGITKIYASGKMVGMKTNMN 582
IG+ I +GK+V ++ + N
Sbjct: 1091 QIGVESIKQTGKVVTVRLSEN 1111
>gi|365852727|ref|ZP_09393084.1| transcription-repair coupling factor [Lactobacillus parafarraginis
F0439]
gi|363714303|gb|EHL97836.1| transcription-repair coupling factor [Lactobacillus parafarraginis
F0439]
Length = 1177
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 233/559 (41%), Positives = 352/559 (62%), Gaps = 15/559 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVA--IQKMVVDLMELYLHRLKQKRPPYPKNPAI- 79
+E K+PR ++KL E +KTK KVA I+ + DL++LY R +K YPK+ ++
Sbjct: 554 SEDKKPR-INKLG---GGEWQKTKRKVASKIEDIADDLIDLYAKRDAEKGYAYPKDDSLQ 609
Query: 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 139
AEF A+FPY TPDQ ++ +++RD+ E PMDRL+ GDVG+GKTEVALRA F V G
Sbjct: 610 AEFEARFPYTETPDQLRSADEIKRDM-EHPKPMDRLLVGDVGYGKTEVALRAAFKAVEVG 668
Query: 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 199
KQ L PT +LA+QH+D + +RF+ YP I+V +LSRFQ+ A+ E L +K+G ++I+V
Sbjct: 669 KQVAFLVPTTILAQQHYDTMMDRFADYP-IEVRVLSRFQTTAQVRETLAGLKNGTVDIVV 727
Query: 200 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 259
GTH LL V +NNLGLL++DEEQRFGVK KE+I + VDVLTL+ATPIPRTL +++
Sbjct: 728 GTHRLLSKDVQFNNLGLLIIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIPRTLNMSMM 787
Query: 260 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 319
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 788 GVRDLSVIETPPSNRYPIQTYVLEQNAGTIREAITREMARGGQVFYLHNRVEDIEKTVEQ 847
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
+ + P +A HGQ QLE+ + F G +L+ T I+E+G+DI N NT+ V++
Sbjct: 848 ISELVPEARVAYIHGQMTENQLEDILYDFINGEYDVLVTTTIIETGVDIPNVNTLFVENA 907
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 439
GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG GF++A +
Sbjct: 908 DHMGLSQLYQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELGSGFKIAMR 967
Query: 440 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-VQIDININP 498
D+ IRG G + G+QQ G V +VG DL+ +ML ++++K V +K+ I++++
Sbjct: 968 DLSIRGAGNLLGKQQHGFVDSVGYDLYTQMLGDAVAKKRGR---KVAFKTDTTIELDVEA 1024
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LPS YI + +E+ + +D L + + L ++G + LLK ++
Sbjct: 1025 YLPSSYIQDNQQKIEIYKRIRQIENED--QLHEVDDDLIDRFGDYGQPVANLLKIAEMKM 1082
Query: 559 MAADIGITKIYASGKMVGM 577
+ + I KI+ G V +
Sbjct: 1083 YSDESMIDKIHQDGPRVTL 1101
>gi|309790907|ref|ZP_07685449.1| transcription-repair coupling factor [Oscillochloris trichoides DG-6]
gi|308227021|gb|EFO80707.1| transcription-repair coupling factor [Oscillochloris trichoides DG6]
Length = 1171
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/568 (39%), Positives = 344/568 (60%), Gaps = 32/568 (5%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPY 88
TL++L T WER K K + A+Q + DL+ LY R ++ + P N E FPY
Sbjct: 553 TLTRLG-TQDWERAKRKARAAVQDLAQDLLALYAQRQTKRGHAFNPDNEWQRELEGSFPY 611
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
T DQ + +V+ D+ E + PMDRLICGDVGFGKTEVALRA F V GKQ +L PT
Sbjct: 612 IETEDQLRVLAEVKTDM-EHDVPMDRLICGDVGFGKTEVALRAAFKAVQDGKQVALLVPT 670
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
VLA+QHF+ +R + +P +KV +LSRF+S E++ + + G ++II+GTH LL
Sbjct: 671 TVLAQQHFETFKQRMAAFP-VKVEMLSRFRSAKEQDVIMRELLLGRVDIIIGTHRLLSKD 729
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
V++ +LGL++VDEEQRFGV+ KE++ + VDVLTL+ATPIPRTL++A+ G RD S+I
Sbjct: 730 VIFKDLGLVIVDEEQRFGVRHKERLKQLRAEVDVLTLTATPIPRTLHMAMAGIRDLSVID 789
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
TPP +R+P+KT+++ + + + AI EL+R GQV++V R++ + + L+ P +
Sbjct: 790 TPPEDRIPVKTYVTPYDETLIREAILRELERNGQVYFVHNRVQSIYHVANHLRNLVPEAN 849
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
I + HGQ R+LE+ M F +G +L+CT I+ESGLD+ +ANT+I+ D FGLAQLY
Sbjct: 850 IGVGHGQLNERELEQVMIDFFEGRHDVLVCTTIIESGLDVSSANTMIIDDATNFGLAQLY 909
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
QLRGRVGR+ A+AYLFY ++++A +RL A++E ELG GF++A +D+ IRG G
Sbjct: 910 QLRGRVGRSANRAYAYLFYKGDRAMTEEAQQRLEAIQEATELGAGFRVAMRDLEIRGAGN 969
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSK-----------------------VDEHCVISV 485
+ G +Q+G + VG DL+ +L +++ + ++E ++S
Sbjct: 970 LLGAEQSGHIAAVGFDLYSRLLEQAVQQLKQRVDAAQHSSATPPPPPAAPIINEKVLVS- 1028
Query: 486 PYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPY 545
V +D+ + LPS+YI + + + +++ + + L+ ++G P
Sbjct: 1029 --PLVTLDLPLTAYLPSDYIP--DEALRLGVYQRMVGSEELTEVRALRQELQDRFGNPPL 1084
Query: 546 SMEILLKKLYVRRMAADIGITKIYASGK 573
LL L ++ +A G+T + S +
Sbjct: 1085 PALHLLTWLQIKALALQAGVTSVTTSNE 1112
>gi|390953904|ref|YP_006417662.1| transcription-repair coupling factor Mfd [Aequorivita sublithincola
DSM 14238]
gi|390419890|gb|AFL80647.1| transcription-repair coupling factor Mfd [Aequorivita sublithincola
DSM 14238]
Length = 1122
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/572 (39%), Positives = 352/572 (61%), Gaps = 24/572 (4%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
F + + P+ SD AW++ K K K ++++ +L+ELY R K + P +
Sbjct: 495 FNGKDGREPKIYKLGSD--AWKKLKQKTKTRVKEIAFNLIELYAKRRTLKGFAFDPDSYL 552
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
AE + F YE TPDQ A DV++D+ E E PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 553 QAELESSFIYEDTPDQSTATEDVKKDM-ENERPMDRLVCGDVGFGKTEVAIRAAFKAVDN 611
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +L PT +LA QHF +ER S+ P +KV L+RF++ E++ L+ +K+G L+I+
Sbjct: 612 GKQVAILVPTTILAFQHFKTFTERLSEMP-VKVDYLNRFRTTKERKTVLEELKNGRLDIV 670
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH L+ V + +LGLL++DEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L
Sbjct: 671 IGTHQLVSKAVEFKDLGLLIIDEEQKFGVGVKDKLKTIKENVDTLTLTATPIPRTLQFSL 730
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
RD S+I+TPPP R P++TH+ F +E + A++YE+ RGGQVF+V RI+ ++E
Sbjct: 731 MAARDLSVITTPPPNRYPVETHVVRFGEENIRDAVRYEISRGGQVFFVHNRIENIKEVAG 790
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+Q+ P I I HGQ ++LE+ M +F +L+ T I+ESGLD+ NANTI + +
Sbjct: 791 LIQRLVPDAKIGIGHGQMEGKKLEDLMLRFMNNEFDVLVSTTIIESGLDVPNANTIFINN 850
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
FGL+ L+Q+RGRVGR++K+A Y P+ S ++D+A +R+ ALE+ ELG G +A
Sbjct: 851 ANNFGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTDEARKRITALEQFSELGSGINIAM 910
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV------PYKS--- 489
KD+ IRG G + G +Q+G + +G + + ++L E++ ++ + ++ P K+
Sbjct: 911 KDLEIRGAGDLLGGEQSGFINEIGFETYQKILAEAIEELKDKEFKNLYDDTEGPKKNFVK 970
Query: 490 -VQIDININPRLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPY 545
+ ID + EY+N++ + + +NE + E L +F + L ++G+ P
Sbjct: 971 EMTIDTDFELLFSDEYVNNITERLNLYTKLNELKTEVE-----LQKFEKDLLDRFGELPE 1025
Query: 546 SMEILLKKLYVRRMAADIGITK-IYASGKMVG 576
+ LL + ++ +A +G+ + I KMVG
Sbjct: 1026 EAKDLLNSVRIKWIAISMGLERLIMKQKKMVG 1057
>gi|423315787|ref|ZP_17293692.1| transcription-repair coupling factor [Bergeyella zoohelcum ATCC
43767]
gi|405585503|gb|EKB59327.1| transcription-repair coupling factor [Bergeyella zoohelcum ATCC
43767]
Length = 1129
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 226/554 (40%), Positives = 343/554 (61%), Gaps = 21/554 (3%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPY 88
TLSKL + AW+ K K K ++++ DL++LY R K + P E A F Y
Sbjct: 507 TLSKLG-SPAWKNLKQKTKAKVKQIAFDLIKLYAKRKTAKGFAFTPDTYLQNELEASFLY 565
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
E TPDQ+KA DV++D+ E ET MDRL+CGDVGFGKTEVA+RA F V+ GKQ VL PT
Sbjct: 566 EDTPDQEKATADVKKDM-EAETIMDRLVCGDVGFGKTEVAIRAAFKAVTDGKQVAVLVPT 624
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
+LA QH+ ER +P + + L+RF++ +K+E L+ ++ G+L+I++GTH L+ +
Sbjct: 625 TILAFQHYRSFQERLKDFP-VNISYLNRFRTAKQKKETLERLESGNLDIVIGTHQLVSDK 683
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
V + +LGLL++DEE +FGV K+K+ + K ++D LTL+ATPIPRTL +L RD S+I
Sbjct: 684 VKFKDLGLLIIDEEHKFGVSVKDKLKTLKSNIDTLTLTATPIPRTLQFSLMAARDLSVIK 743
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
TPPP R P++T L F++E + AI YE+ R GQV++V RI+ L+E +Q+ P
Sbjct: 744 TPPPNRQPVETQLIGFNEEVIRDAISYEIQRDGQVYFVNNRIENLKEMAGLIQRLVPDAR 803
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+ HGQ ++LEE + F +G +L+ T IVESG+D+ NANTI + D Q+FG+A L+
Sbjct: 804 VITGHGQMDGKELEERILDFMEGKYDVLVSTTIVESGVDVPNANTIFINDAQKFGMADLH 863
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ+A KD+ IRG G
Sbjct: 864 QMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGD 923
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY-------------KSVQIDIN 495
+ G +Q+G + +G + + +++ E+L ++ + K V ID +
Sbjct: 924 LLGGEQSGFINEMGFEAYQKIMQEALEELQHEEDFDTLFEDKEDRKKLFKSTKEVNIDTD 983
Query: 496 INPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+ LP +YI+ +E + + + AE EQD L +F L ++G P LLK +
Sbjct: 984 LELMLPDDYISSIEERLSLYQKLAEIQNEQD---LQRFGNELEDRFGAMPEEAINLLKSV 1040
Query: 555 YVRRMAADIGITKI 568
++ +AA+IG KI
Sbjct: 1041 ELKWLAAEIGFEKI 1054
>gi|392939893|ref|ZP_10305537.1| LOW QUALITY PROTEIN: transcription-repair coupling factor Mfd
[Thermoanaerobacter siderophilus SR4]
gi|392291643|gb|EIW00087.1| LOW QUALITY PROTEIN: transcription-repair coupling factor Mfd
[Thermoanaerobacter siderophilus SR4]
Length = 1169
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 234/558 (41%), Positives = 350/558 (62%), Gaps = 14/558 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFA 83
T P L+KL + W R K K K A+ + DL++LY R K + P P EF
Sbjct: 560 TDNPPKLNKLG-GSEWLRAKRKAKKAVADLAKDLIQLYAKRQMVKGHAFSPDTPWQKEFE 618
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
QFPYE T DQ + +++ D+ E++ PMDRL+CGDVG+GKTEVALRA F V+ GKQ
Sbjct: 619 EQFPYEETEDQLRCIKEIKEDM-EKDRPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVA 677
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
L PT +LA QH+ ERF ++P +K+ +LSRF++ E+ + + + G ++IIVGTH
Sbjct: 678 FLCPTTILAYQHYTNFIERFKEFP-VKIEMLSRFRTPKEQAQIIKGLAEGTIDIIVGTHR 736
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LL + V + +LGLL++DEEQRFGV KEKI K ++DVLTLSATPIPRTL+++L G RD
Sbjct: 737 LLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLIGIRD 796
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S++ PP +R P++T++ F++E + AI E+ RGGQV++V R+ G+E+ ++
Sbjct: 797 MSVLENPPEDRFPVETYVMEFNEELIKDAILREIGRGGQVYFVYNRVNGIEKMASLVKDL 856
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
PG +A+AHGQ QLE+ M F G +L+ T I+E+GLDI N NTIIV D + G
Sbjct: 857 VPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLG 916
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E E G GF++A +D+ I
Sbjct: 917 LSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMRDLEI 976
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININPRLP 501
RG G + G +Q G + +G DL+ ++L E++ + P + + IDI +N +
Sbjct: 977 RGAGNLLGAEQHGHINAIGYDLYLKLLEEAIRNLKGEA----PKEEITTTIDIKVNAYID 1032
Query: 502 SEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
S YI +EM + A + +D +++ +E L ++G P +E LL+ Y++ +A
Sbjct: 1033 SSYIEDENLRLEMYKKIASIESRED---MIEISEELVDRFGDYPKPVEALLEIAYLKAIA 1089
Query: 561 ADIGITKIYASGKMVGMK 578
+ + IT+I G +V +K
Sbjct: 1090 SQLYITEITEKGNVVILK 1107
>gi|420178951|ref|ZP_14685275.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM057]
gi|420181570|ref|ZP_14687767.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM053]
gi|394245639|gb|EJD90919.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM057]
gi|394245822|gb|EJD91094.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM053]
Length = 1169
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPY+ TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYQLTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>gi|420186708|ref|ZP_14692750.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM039]
gi|394258878|gb|EJE03751.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM039]
Length = 1169
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 353/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + ++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVVDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEKSPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>gi|282915821|ref|ZP_06323589.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus D139]
gi|282320312|gb|EFB50654.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus D139]
Length = 1168
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 226/562 (40%), Positives = 356/562 (63%), Gaps = 13/562 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---VQIDIN 495
+D+ IRG G + G+QQ G + VG DL+ +ML E+ V+E I P V++D+N
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEA---VNEKRGIKEPESDVPEVEVDLN 1022
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
++ LP+EYI + + +E+ + K D ++ + L ++ P + LL +
Sbjct: 1023 LDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVE 1080
Query: 556 VRRMAADIGITKIYASGKMVGM 577
++ A GIT I GK++ +
Sbjct: 1081 IKVHALHSGITLIKDKGKIIDI 1102
>gi|15612632|ref|NP_240935.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans
C-125]
gi|10172681|dbj|BAB03788.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans
C-125]
Length = 1181
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/533 (40%), Positives = 337/533 (63%), Gaps = 6/533 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ K + + +++ + DL++LY R K + P P AEF A FPY+ T DQ +A
Sbjct: 574 WKKVKRRVQSSVEDIADDLIKLYAEREASKGFAFAPDGPEQAEFEASFPYQETEDQLRAI 633
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E+E PMDRL+CGDVG+GKTEVA+RA F + GKQ +L PT +LA+QHF+
Sbjct: 634 QEIKEDM-EKERPMDRLLCGDVGYGKTEVAIRAAFKAIMNGKQVAILVPTTILAQQHFET 692
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF+ YP I +G+LSRF+S+ E+ + L +K G ++++VGTH LL V + +LGLL+
Sbjct: 693 IQERFADYP-INIGVLSRFRSRKEQSQTLKGLKAGSVDLVVGTHRLLSKDVQFKDLGLLI 751
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
VDEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 752 VDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 811
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ V AI+ EL RGGQV+++ R++ +E + + P ++ AHGQ
Sbjct: 812 TYVVEYNSPLVREAIERELSRGGQVYFLYNRVENIERMANEISMLVPDARVSFAHGQMKE 871
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+I+ + GL+QLYQ+RGRVGR++
Sbjct: 872 SELESIMLAFLEGESDVLVTTTIIETGVDIPNVNTLIIHGADKMGLSQLYQIRGRVGRSN 931
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G QQ G +
Sbjct: 932 RVAYAYFTYQRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLAIRGAGNLLGAQQHGFI 991
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML E++ K P ++V+ID+ ++ +P YI + +EM
Sbjct: 992 ESVGFDLYSQMLKEAIEKRKGEQPKEEP-RNVEIDVQVDAYIPDSYIQDAKQKIEMYKRF 1050
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYAS 571
+ I + + + ++G+ P + LL+ ++ +A G+ I S
Sbjct: 1051 RGV--ETIEEINDLKDEMFDRFGEYPQEVSDLLQLTTIKIIAYQEGVESIVES 1101
>gi|397904462|ref|ZP_10505373.1| Transcription-repair coupling factor [Caloramator australicus RC3]
gi|397162472|emb|CCJ32707.1| Transcription-repair coupling factor [Caloramator australicus RC3]
Length = 1165
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 222/542 (40%), Positives = 349/542 (64%), Gaps = 8/542 (1%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK-QKRPPYPKNPAIAEFAAQF 86
P ++KL ++ W + K K K ++++M DL++LY R K Q P P +F +F
Sbjct: 563 PPKVNKLG-SSDWIKTKNKVKASLKEMAEDLIKLYAERSKIQGHAFSPDTPWQRQFEDEF 621
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
PY+ T DQ +A +++RD+ E PMDRL+CGDVG+GKTEVA+RA F V GKQ VL
Sbjct: 622 PYQETEDQLRAIEEIKRDM-ESPKPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLV 680
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA+QH++ +RF YP I + ++SRF+++ E++ L + +G+++II+GTH LL
Sbjct: 681 PTTILAEQHYNTFLQRFKGYP-INIDMISRFRNRQEQKRTLKELANGNVDIIIGTHKLLN 739
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
V + +LGLL++DEEQRFGV KEKI + K ++DVLTL+ATPIPRTL+++L G RD S+
Sbjct: 740 KEVKFKDLGLLIIDEEQRFGVSHKEKIKALKKNIDVLTLTATPIPRTLHMSLIGVRDMSI 799
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I TPP +R P++T++ +++ V AI E+ RGGQVF+V R++ + + + + P
Sbjct: 800 IETPPEDRYPVQTYVLEYNEAIVREAILREISRGGQVFFVYNRVETIIDMQREISKLVPE 859
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
I IAHGQ +LE+ + F G +IL+CT I+E+G+D+ N NT+IV D + GL+Q
Sbjct: 860 ARIIIAHGQMNEEELEDAIISFINGDAEILLCTTIIETGIDMPNVNTLIVYDADRMGLSQ 919
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
LYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E E G GF++A +D+ IRG
Sbjct: 920 LYQLRGRVGRSNRIAYAYFTYKKDKVLSEAAEKRLKAIKEFTEFGSGFKIAMRDLEIRGA 979
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
G++FG +Q G + VG D++ ++L E++ ++ + QI++ IN +PSEYI
Sbjct: 980 GSLFGTKQHGHLAAVGYDMYCKLLDEAVRELKGE--VKEEEIETQIELQINAFIPSEYIE 1037
Query: 507 HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGIT 566
+ +E+ + A+ D M + L ++G P ++E L++ Y++ +A + IT
Sbjct: 1038 DEKLKIEVYKKI--ASIFDYESKMDIIDELIDRFGDVPKNVENLIQVAYIKALARKLKIT 1095
Query: 567 KI 568
+
Sbjct: 1096 NV 1097
>gi|417910409|ref|ZP_12554129.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU105]
gi|418620917|ref|ZP_13183710.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU123]
gi|341656183|gb|EGS79905.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU105]
gi|374830961|gb|EHR94714.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU123]
Length = 1166
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 353/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + ++ + +L++LY R Y ++ A
Sbjct: 548 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVVDIADELIDLYKEREMSVGYQYGQDTAE 605
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 606 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 664
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 665 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 723
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 724 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 783
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 784 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 843
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 844 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 903
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 904 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 963
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 964 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEKSPDAPDIEVELHLDA 1023
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1024 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1081
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1082 HALHAGVELIKDKGKSI 1098
>gi|418328257|ref|ZP_12939374.1| transcription-repair coupling factor [Staphylococcus epidermidis
14.1.R1.SE]
gi|418631642|ref|ZP_13194097.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU128]
gi|365232153|gb|EHM73164.1| transcription-repair coupling factor [Staphylococcus epidermidis
14.1.R1.SE]
gi|374834512|gb|EHR98152.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU128]
Length = 1166
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 548 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 605
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ E+ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 606 QSAFEHDFPYELTPDQSKSIDEIKGDM-EKARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 664
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 665 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 723
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 724 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 783
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 784 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 843
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 844 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 903
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 904 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 963
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 964 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1023
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1024 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1081
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1082 HALHAGVELIKDKGKSI 1098
>gi|242241588|ref|ZP_04796033.1| transcription-repair coupling factor [Staphylococcus epidermidis
W23144]
gi|242234969|gb|EES37280.1| transcription-repair coupling factor [Staphylococcus epidermidis
W23144]
Length = 1166
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 548 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 605
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ E+ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 606 QSAFEHDFPYELTPDQSKSIDEIKGDM-EKARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 664
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 665 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 723
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 724 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 783
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 784 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 843
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 844 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 903
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 904 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 963
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 964 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1023
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1024 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1081
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1082 HALHAGVELIKDKGKSI 1098
>gi|73663562|ref|YP_302343.1| transcription-repair coupling factor [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|123761497|sp|Q49V12.1|MFD_STAS1 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|72496077|dbj|BAE19398.1| transcription-repair coupling factor [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 1170
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 234/559 (41%), Positives = 358/559 (64%), Gaps = 11/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E K P+ L+KL T W++ K K + +++ M +L+ELY + ++ Y P
Sbjct: 552 YVASEDKSPK-LNKLG-GTEWKKTKAKVQQSVEDMADELIELY--KAREMSVGYKFGPDT 607
Query: 80 AE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136
AE F FPYE TPDQ K+ ++++D+ E E PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 AEQNDFEIDFPYELTPDQSKSIEEIKQDM-EIERPMDRLLCGDVGYGKTEVAVRAAFKAV 666
Query: 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 196
GKQ L PT +LA+QH++ + ER +P I+V L+SRF++ E +E + +K G ++
Sbjct: 667 MEGKQVAFLVPTTILAQQHYETLIERMQDFP-IEVQLISRFRTTKEVKETKEGLKSGFVD 725
Query: 197 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 256
I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I S K +VDVLTL+ATPIPRTL++
Sbjct: 726 IVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKSLKNNVDVLTLTATPIPRTLHM 785
Query: 257 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 316
++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E
Sbjct: 786 SMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEK 845
Query: 317 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 376
+ LQ P +I +AHGQ R LEETM F I++ T I+E+G+D+ NANT+I+
Sbjct: 846 REQLQMLMPDANIGVAHGQMNERDLEETMLSFINHEYDIIVTTTIIETGVDVPNANTLII 905
Query: 377 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 436
+D +FGL+QLYQLRGRVGR+ + +AY +P +LS+ A +RL A++E ELG GF++
Sbjct: 906 EDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLSETAEDRLQAIKEFTELGSGFKI 965
Query: 437 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI 496
A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ ++I++NI
Sbjct: 966 AMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKAEKQDAPEIEIELNI 1025
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
+ LP+EYI + ++ +E+ + K + LM + L ++ P +E LL+ + +
Sbjct: 1026 DAYLPAEYIPNEQSKIEIYKKLRKIESE--TQLMDVKDELIDRFNDYPIEVERLLEMMEI 1083
Query: 557 RRMAADIGITKIYASGKMV 575
+ A G+T I GK V
Sbjct: 1084 KVHALHAGVTLIKDVGKQV 1102
>gi|402495661|ref|ZP_10842384.1| transcription-repair coupling factor [Aquimarina agarilytica ZC1]
Length = 1120
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 222/551 (40%), Positives = 333/551 (60%), Gaps = 15/551 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQK 95
+ AW+ K K K ++ + +L++LY R QK Y P + E A F YE TPDQ
Sbjct: 509 SKAWKTLKNKTKARVKHIAYNLIQLYAKRRLQKGFQYAPDSYLQHELEASFLYEDTPDQS 568
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
A V+ D+ E E PMDRL+CGDVGFGKTEVA+RA F V GKQ +L PT VLA QH
Sbjct: 569 TATAAVKADM-EGEQPMDRLVCGDVGFGKTEVAVRAAFKAVDNGKQVAILVPTTVLAFQH 627
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
+ SER +P + V L+RF++ +K E L+ + GH++I++GTH L V + +LG
Sbjct: 628 YKTFSERLKDFP-VTVDYLNRFRTAKQKRETLEKLAKGHVDIVIGTHQLASKNVKFKDLG 686
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL++DEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L RD S I+TPPP R
Sbjct: 687 LLIIDEEQKFGVAVKDKLKTIKANVDTLTLTATPIPRTLQFSLMAARDLSTIATPPPNRY 746
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
PI+T + F++E + A+ YE+ RGGQVF++ R++ ++E +Q+ P +A+ HGQ
Sbjct: 747 PIETEVIRFNEETIRDAVSYEIQRGGQVFFIHNRVQNIKEVAGMIQRLVPDAKVAVGHGQ 806
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
+QLE+ M F +GA +L+ T I+ESGLD+ NANTI + + FG++ L+Q+RGRVG
Sbjct: 807 MEGKQLEKLMLDFMEGAFDVLVSTTIIESGLDVSNANTIFINNANNFGISDLHQMRGRVG 866
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A Y P S +++ A +R+ AL + ELG G Q+A KD+ IRG G + G +Q+
Sbjct: 867 RSNKKAFCYFITPPYSAMTEDARKRITALVQFSELGSGIQIAMKDLEIRGAGDLLGGEQS 926
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVIS---------VPYKSVQIDININPRLPSEYIN 506
G + +G D + ++L E++ ++ E+ V K QID + + P +YIN
Sbjct: 927 GFINEIGFDTYQKILNEAIEELKENEFKDLYKDEQKEKVFLKDTQIDTDFSLLFPDDYIN 986
Query: 507 HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGIT 566
+ + + + K ++ L F + L ++G P E LL + ++ MA IG+
Sbjct: 987 SISERLSLYTDLNKLKTEEELVL--FEKDLVDRFGALPAQAEDLLNSVRLKWMATRIGLE 1044
Query: 567 KIY-ASGKMVG 576
KI K++G
Sbjct: 1045 KIVLKQDKLIG 1055
>gi|420174337|ref|ZP_14680789.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM061]
gi|420193855|ref|ZP_14699701.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM023]
gi|394245133|gb|EJD90454.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM061]
gi|394259379|gb|EJE04225.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM023]
Length = 1169
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ E+ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-EKARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>gi|430751825|ref|YP_007214733.1| transcription-repair coupling factor Mfd [Thermobacillus composti
KWC4]
gi|430735790|gb|AGA59735.1| transcription-repair coupling factor Mfd [Thermobacillus composti
KWC4]
Length = 1176
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 233/574 (40%), Positives = 349/574 (60%), Gaps = 19/574 (3%)
Query: 8 SCTCGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK 67
S I + +E K P+ + KL + W R K K + ++Q + DL+ LY R
Sbjct: 531 SVPIDQIDLIQKYVGSEDKEPK-IYKLGGSE-WNRVKNKVRSSVQDIAEDLVRLYAERQS 588
Query: 68 QKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTE 126
+ K+ P EF A FPYE TPDQ +A +++RD+ E PMDRL+CGDVG+GKTE
Sbjct: 589 TPGHAFQKDTPYQQEFEAMFPYEETPDQLRAIEEIKRDM-ESPRPMDRLLCGDVGYGKTE 647
Query: 127 VALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 186
VA+RA F GKQ VL PT +LA+QH++ ERF+ YP V +LSRF+S+ ++ E
Sbjct: 648 VAIRAAFKAAIEGKQVAVLVPTTILAQQHYETFRERFAGYP-FNVQVLSRFRSRKDQTET 706
Query: 187 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 246
+ +K G ++I++GTH LL VV+ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+
Sbjct: 707 IKGLKAGTVDIVIGTHRLLSKDVVFKDLGLLIVDEEQRFGVTHKEKLKRLKTNVDVLTLT 766
Query: 247 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 306
ATPIPRTL++++ G RD SLI TPP R P++T++ +S V AI+ EL RGGQV+Y+
Sbjct: 767 ATPIPRTLHMSMLGVRDLSLIETPPENRFPVQTYVVEYSPSLVREAIERELARGGQVYYL 826
Query: 307 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 366
R++G+ + + + P +A+ HGQ ++LE+T+ F G +L+ T+I+E+G+
Sbjct: 827 YNRVQGIYQMAEQISALVPDARVAVGHGQMSEQELEKTILDFLDGEFDVLVSTSIIETGV 886
Query: 367 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 426
DI N NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL ++ E
Sbjct: 887 DIPNVNTLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYRRDKVLNEAAEKRLQSIRE 946
Query: 427 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP 486
ELG GF++A +D+ IRG G + G +Q G + +VG D++ +ML E ++K + ++ P
Sbjct: 947 FTELGSGFKIAMRDLAIRGAGNLLGAEQHGFIASVGFDMYSQMLAEEIAK-RKASLLGQP 1005
Query: 487 YKSVQ-----IDININPRLPSEYINHLENPMEMVNEA---EKAAEQDIWCLMQFTESLRR 538
V+ ID+ ++ LPSEYI +E+ + + E D E L
Sbjct: 1006 EPEVREVNTAIDLAMDAYLPSEYIYDSMQKIEIYKKVAVIREPEETD-----DLREELVD 1060
Query: 539 QYGKEPYSMEILLKKLYVRRMAADIGITKIYASG 572
++G P ++E LL ++ GI +I G
Sbjct: 1061 RFGDPPEAVENLLAVARLKAYGRRCGIEQITQRG 1094
>gi|418614860|ref|ZP_13177820.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU118]
gi|374818948|gb|EHR83083.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU118]
Length = 1166
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 548 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 605
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ E+ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 606 QSAFEHDFPYELTPDQSKSIDEIKGDM-EKARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 664
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 665 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 723
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 724 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 783
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 784 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 843
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 844 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 903
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 904 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 963
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 964 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1023
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1024 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1081
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1082 HALHAGVELIKDKGKSI 1098
>gi|160878272|ref|YP_001557240.1| transcription-repair coupling factor [Clostridium phytofermentans
ISDg]
gi|160426938|gb|ABX40501.1| transcription-repair coupling factor [Clostridium phytofermentans
ISDg]
Length = 1179
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 228/578 (39%), Positives = 358/578 (61%), Gaps = 8/578 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
+ ++P+ L+KL ++ W+ K K K A++++ +L+ELY R + + ++ EF
Sbjct: 562 DARKPK-LNKL-NSVEWKNTKAKVKGAVKEIAKELVELYATRQAKAGHSFCEDTVWQREF 619
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPYE T DQ +A D +RD+ E + MDRLICGDVG+GKTE+A+RA F +S GKQ
Sbjct: 620 EEMFPYEETDDQLRAIDDTKRDM-ESKKIMDRLICGDVGYGKTEIAIRAAFKAISDGKQV 678
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
+ L PT +LA+QH++ S+R +P I V +L RF++ A++++ L+ +K G L+I++GTH
Sbjct: 679 VFLVPTTILAQQHYNTFSQRMMNFP-ISVDMLCRFKTPAQQKKTLENLKKGQLDILIGTH 737
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
+L + + NLGLL++DEEQRFGV KEKI K +DVLTL+ATPIPRTL+++L G R
Sbjct: 738 RVLSKDIQFKNLGLLIIDEEQRFGVTHKEKIKQMKGDIDVLTLTATPIPRTLHMSLVGIR 797
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S++ PP +RLPI+T + + E + AI EL RGGQV+YV R+ GL+E + + +
Sbjct: 798 DMSVLEEPPVDRLPIQTFVLEHNDEIIREAINRELARGGQVYYVHNRVNGLDEITNTIAR 857
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P ++A AHGQ + QLE+ M +F G I +L+ T I+E+GLDI N NT+I+ + Q
Sbjct: 858 LVPDANVAFAHGQMHEHQLEKIMFEFINGEIDVLVSTTIIETGLDISNVNTMIIDNADQL 917
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR+++ + A+L Y LL + A +RL A++E ELG GF++A +D+
Sbjct: 918 GLSQLYQLRGRVGRSNRTSFAFLMYKRDKLLKEVAEKRLQAIKEFTELGSGFKIAMRDLE 977
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G + G QQ+G + VG DL+ +ML +++ + + + ID++++ +PS
Sbjct: 978 IRGAGNLLGAQQSGHMEAVGYDLYCKMLNDAVKGLKGEISDEDTFDT-SIDMDMDAFIPS 1036
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
YI + ++M ++ + MQ E + ++G P S+ LL ++ MA
Sbjct: 1037 TYIKNEMQKLDMYKRIAGIENEEEFMDMQ--EEMLDRFGDIPTSVNNLLNIALLKSMAHQ 1094
Query: 563 IGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRN 600
+ ++ + G V + K+ MI + +V N
Sbjct: 1095 VYVSNLVQKGTEVKLSMYPKAKIKVEMIPELLLKVGNN 1132
>gi|408673356|ref|YP_006873104.1| transcription-repair coupling factor [Emticicia oligotrophica DSM
17448]
gi|387854980|gb|AFK03077.1| transcription-repair coupling factor [Emticicia oligotrophica DSM
17448]
Length = 1113
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 232/573 (40%), Positives = 348/573 (60%), Gaps = 28/573 (4%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQF 86
P T+SKL + WE +K+K K ++ + +L+ LY R + K+ + AE + F
Sbjct: 496 PPTMSKLG-SGEWENKKSKVKRQVKDIAKELISLYAKRRLAPGFQFSKDGFMQAELESSF 554
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
YE TPDQ KA DV+ D+ E+ PMDRL+CGDVGFGKTE+A+RA F V+ KQ VL
Sbjct: 555 LYEDTPDQAKATADVKDDM-EKPHPMDRLVCGDVGFGKTEIAIRAAFKSVADSKQVAVLV 613
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT VLA QH ER SK+P + + +SRF+S E + L +K G +I+VGTH +L
Sbjct: 614 PTTVLAMQHTRTFKERLSKFP-VNIEEISRFKSAKEISQTLKNVKEGKTDILVGTHRILN 672
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
+ + NLGLL++DEEQ+FGVK K+++ K +VDVLTL+ATPIPRTL+ +L G RD S+
Sbjct: 673 KDIEFKNLGLLIIDEEQKFGVKAKDRLKEIKHNVDVLTLTATPIPRTLHFSLLGARDLSI 732
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
ISTPPP R P+ T + F +E + AI YEL RGGQVF+V R+ +E + + + P
Sbjct: 733 ISTPPPNRQPVTTEVHVFKEEFIRDAISYELKRGGQVFFVHNRVNDIESIANIILRLVPD 792
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
I IAHGQ +LE+ M KF +G IL+ TNI+ESGLDI NANTII+ Q FG++
Sbjct: 793 AKIGIAHGQMDGDKLEKVMMKFIEGDYDILVSTNIIESGLDISNANTIIINQAQNFGMSD 852
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+Q+RGRVGR++++A YL P S+LS + +RL LEE +LG GF+++ +D+ IRG
Sbjct: 853 LHQMRGRVGRSNRKAFCYLLTPPISVLSKDSRKRLQTLEEFSDLGDGFKVSMRDLDIRGA 912
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEH-------------CVISVPYKSVQID 493
G + G +Q+G + ++G + + ++L E++ ++ E+ + +P ++ D
Sbjct: 913 GNLLGAEQSGFINDLGYETYHKILDEAVQELKENEFKDLFMKELGTPLDLKLPDCLIETD 972
Query: 494 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553
+ I +P Y+ ++ + + N+ + ++D L +F +S+ ++G P +E L K
Sbjct: 973 LQI--IIPETYVGNISERLSLYNQLDNIEKED--ELQEFHKSMIDRFGPMPEEVENLFKI 1028
Query: 554 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVF 586
+R A IG K+ +K N+ K F
Sbjct: 1029 ARIRWKAEQIGFEKL-------TLKNNIAKGYF 1054
>gi|443635053|ref|ZP_21119223.1| transcription-repair coupling factor [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443345106|gb|ELS59173.1| transcription-repair coupling factor [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 1177
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/493 (43%), Positives = 325/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + E
Sbjct: 558 SEGKEPK-LYKLGGS-EWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPDHEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 616 FESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETIKERFQDYP-INIGLLSRFRTRKEANETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + + +++ +ID+ ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFET-EIDVELDAYIP 1032
Query: 502 SEYINHLENPMEM 514
YI + ++M
Sbjct: 1033 ETYIQDGKQKIDM 1045
>gi|224369910|ref|YP_002604074.1| hypothetical protein HRM2_28210 [Desulfobacterium autotrophicum HRM2]
gi|223692627|gb|ACN15910.1| Mfd [Desulfobacterium autotrophicum HRM2]
Length = 1165
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 231/543 (42%), Positives = 342/543 (62%), Gaps = 16/543 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQK-----RPPYPKNPAIAEFAAQ 85
L K+ T W++ + K K ++KM +L++LY R K RP + N +F A
Sbjct: 562 LDKIGGKT-WQKSRAKAKKEVEKMAGELLKLYAERRVAKGFAFSRPDHFFN----DFEAS 616
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
FP+E TPDQ KA DV D+ E E PMDRL+CGDVG+GKTEVA+RA F V+ GKQ ++
Sbjct: 617 FPFEETPDQLKAIDDVLVDM-ESERPMDRLVCGDVGYGKTEVAIRATFKAVTDGKQVAIV 675
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA+QH ERF YP I V LSRF++K E+ + + ++ G L++++GTH LL
Sbjct: 676 VPTTILAEQHVHTFRERFGNYP-ITVESLSRFRTKGEQAKIVKDLEQGKLDVVIGTHRLL 734
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
+ + +LGLLV+DEEQRFGVK KE + + SVDVL L+ATPIPRTL+++LTG RD S
Sbjct: 735 QKDIAFKSLGLLVIDEEQRFGVKHKEALKKRRSSVDVLALTATPIPRTLHMSLTGMRDIS 794
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+ISTPP +R PI +++S + AI+ EL+RGGQ+F++ IK + + + L++ P
Sbjct: 795 IISTPPVDRQPIVSYISEYDDAIAAGAIQKELERGGQIFFIHNNIKTIFKTAENLKKLVP 854
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
V IA+AHG+ LE+ M +F I +L+CT IVESGLDI +ANT+I+ FGLA
Sbjct: 855 EVRIAVAHGRLNEASLEKAMLQFINREIDMLVCTTIVESGLDIPSANTMIINRADMFGLA 914
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
Q+YQLRGR+GR +++A+AYLF P++ L+ A +RLAAL E R+LG GFQ+A KD+ IRG
Sbjct: 915 QIYQLRGRIGRGEEQAYAYLFVPEEHRLTRDAQKRLAALMEHRDLGSGFQIAMKDLQIRG 974
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYI 505
G+ G Q+G V VG D+F ++L E+++ + + P + +I++ ++ + EY+
Sbjct: 975 AGSALGGSQSGHVAAVGYDMFLKLLDEAVADLKGQPLTD-PLEP-EINVTLSTFISDEYV 1032
Query: 506 NHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
+E + + + MQ + L ++GK P +L K+ +R + G+
Sbjct: 1033 QSIEQRLTIYRRLSQMTTVKEVAAMQ--QELVDRFGKLPEEAGNMLLKIMLRVLCVKAGV 1090
Query: 566 TKI 568
K+
Sbjct: 1091 KKL 1093
>gi|420200971|ref|ZP_14706608.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM031]
gi|394267353|gb|EJE11949.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM031]
Length = 1169
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/557 (40%), Positives = 353/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ E+ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-EKARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKERLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKYLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>gi|363892230|ref|ZP_09319398.1| transcription-repair coupling factor [Eubacteriaceae bacterium CM2]
gi|361964180|gb|EHL17224.1| transcription-repair coupling factor [Eubacteriaceae bacterium CM2]
Length = 1127
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 226/548 (41%), Positives = 343/548 (62%), Gaps = 7/548 (1%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQFPYEPTPDQK 95
+ W+++K K K A+ ++ L+ELY R QK + K+ EF A FP+E T DQ
Sbjct: 561 SNQWKKQKQKAKKAVDEIAKYLIELYAERENQKGYAFSKDTVWQREFEALFPFEETQDQL 620
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
K+ D++RD+ E PMDRLICGDVG+GKTEVALR IF KQ L PT +LA+QH
Sbjct: 621 KSIKDIKRDM-ENIRPMDRLICGDVGYGKTEVALRGIFKACMDQKQVAFLVPTTILAQQH 679
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
+ +S+RF YP I V +LSRF++K E+E+ ++ IK+G +++++GTH LL V + N+G
Sbjct: 680 YKTLSDRFENYP-INVDVLSRFKTKKEQEKTVEKIKNGEVDVVIGTHRLLSKDVEFKNIG 738
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
+LV+DEEQRFGVK KEKI K ++DVLTL+ATPIPRTL ++L+G RD S++ PP +R
Sbjct: 739 MLVIDEEQRFGVKHKEKIKQMKSNIDVLTLTATPIPRTLNMSLSGIRDMSVLEEPPNDRY 798
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P+ T+++ + ++ AI+ E+ R GQVF+V I+ +++ +F+Q+ P IAIAHGQ
Sbjct: 799 PVITYVTEAREGIILDAIEREMARNGQVFFVYNSIENIDKMYNFIQKLVPSARIAIAHGQ 858
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
+ LE+ M + + +L+CT I+E+G+DI NANTIIV + + GL+QLYQLRGRVG
Sbjct: 859 MSAIALEDIMMDYLEKKYDVLLCTTIIETGMDISNANTIIVYNADKMGLSQLYQLRGRVG 918
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+ ++A+AYL Y +L++ A +RL A+ E E G GF++A D+ IRG G I GE Q
Sbjct: 919 RSSRQAYAYLMYEKDKVLTEIAQKRLKAIREFTEFGSGFRVAMMDLEIRGSGNILGEVQH 978
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMV 515
G + VG DL+ +ML +S +++ V S ++ +N+N +P +YI ME+
Sbjct: 979 GHIEEVGYDLYIKMLNDSFNRLKGKTVEEKV--STEVYLNVNAYIPDDYIEDEIQKMEIY 1036
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 575
+ ++ + +Q + ++ P +E LLK +R + I + KI + +
Sbjct: 1037 KKIASINSKEDYFDIQ--AEIEDRFSDIPQEVENLLKISSIRSLGEKIRVVKISQKNRNI 1094
Query: 576 GMKTNMNK 583
+T K
Sbjct: 1095 VYETKTQK 1102
>gi|374992836|ref|YP_004968335.1| transcription-repair coupling factor Mfd [Desulfosporosinus orientis
DSM 765]
gi|357211202|gb|AET65820.1| transcription-repair coupling factor Mfd [Desulfosporosinus orientis
DSM 765]
Length = 1177
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/542 (40%), Positives = 343/542 (63%), Gaps = 7/542 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLK-QKRPPYPKNPAIAEFAAQFPYEPTPDQKK 96
+ W + K K + A+++M +DL++LY R Q P N EF +FPY TPDQ +
Sbjct: 574 SEWHKVKKKTRSAVKEMAIDLVKLYAKRETIQGYAFSPDNVWQNEFEDKFPYVETPDQLQ 633
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
+ DV+ D+ R PMDRL+CGDVG+GKTEV LRA F V KQ VL PT +LA+QHF
Sbjct: 634 SIQDVKADMM-RARPMDRLLCGDVGYGKTEVVLRAAFKAVMDSKQVAVLVPTTILAQQHF 692
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF+ YP I + +LSRF+S E++E + +K G +++IVGTH +L V + +LGL
Sbjct: 693 NTFKERFTGYP-ITIEMLSRFRSLKEQKEIIQRLKEGKIDVIVGTHRILSEAVKFYDLGL 751
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV KEK+ + K +VDVLTLSATPIPRTL+++L G RD S+I TPP R P
Sbjct: 752 LVIDEEQRFGVAHKEKLKTLKGNVDVLTLSATPIPRTLHMSLVGVRDMSVIETPPEGRYP 811
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T+++ F + V AI+ E+ RGGQVFYV R++ +++ FL + P +AHGQ
Sbjct: 812 VQTYVTEFRPDVVREAIRREIQRGGQVFYVHNRVEDMDQVTRFLSELVPEAKFGVAHGQM 871
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
R+LE+ M F + + +L+ T I+E+GLD+ NANT+I+ + ++GL+QLYQLRGRVGR
Sbjct: 872 RERELEQVMLDFLEHEMDVLVSTTIIETGLDMPNANTLIIDEADRYGLSQLYQLRGRVGR 931
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
++++A+ YL Y + +L++ A +RLAA+ E E G GF++A +D+ IRG G + G QQ G
Sbjct: 932 SNRKAYTYLLYKPQKVLTEIAEKRLAAIREFTEFGAGFKIAMRDLEIRGAGNLIGAQQHG 991
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ VG +++ +ML E++ ++ V V S I++ I+ LP Y+ + +
Sbjct: 992 HLAAVGFEMYSQMLKEAVQEIRGEKVEEVTEPS--IELQIDAFLPDTYVTDSQTKASLYQ 1049
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVG 576
++ L + + L ++G P +E L++ + ++ +A+ + I ++ + V
Sbjct: 1050 RLGNVKNEN--QLSEMVDELVDRFGTPPREVEHLIEIIRLKILASALKIEQVQQVKQNVS 1107
Query: 577 MK 578
++
Sbjct: 1108 LR 1109
>gi|256820721|ref|YP_003142000.1| transcription-repair coupling factor [Capnocytophaga ochracea DSM
7271]
gi|256582304|gb|ACU93439.1| transcription-repair coupling factor [Capnocytophaga ochracea DSM
7271]
Length = 1109
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/561 (39%), Positives = 344/561 (61%), Gaps = 16/561 (2%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQ 85
+P + KL + AW+ K K K ++++ +L++LY R + K Y + + E A
Sbjct: 489 KPPKIYKLG-SGAWKALKQKTKTRVKEIAFNLIQLYAKRKESKGYAYSHDSYMQNELEAS 547
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V GKQ VL
Sbjct: 548 FLYEDTPDQSKATAEVKADM-ESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVL 606
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT VLA QHF S+R +P +++ L+RF++ EK+ L+ + +G L+II+GTH ++
Sbjct: 607 VPTTVLAFQHFQTFSQRMKDFP-VRIDYLNRFRTAKEKKIILEELANGQLDIIIGTHQIV 665
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L RD S
Sbjct: 666 GEKVAYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLS 725
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+TPPP R PI + + FS+E + I+YE+ RGGQVF++ R++ ++E +Q+ P
Sbjct: 726 VINTPPPNRYPIDSQVVPFSEEIIRDGIRYEIQRGGQVFFMHNRVENIQEVAGMIQRLLP 785
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
+AI HGQ ++LEETM F GA +L+ T I+E+GLD+ NANTI + + FGL+
Sbjct: 786 DARVAIGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNAHNFGLS 845
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG G +A KD+ IRG
Sbjct: 846 DLHQMRGRVGRSNKKAFCYFITPPLVAMSDGARKRIEAIAQFSDLGSGLNIAMKDLEIRG 905
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---------VQIDINI 496
G + G +Q+G + +G + + ++L E++ ++ E+ + + + QID +
Sbjct: 906 AGDLLGGEQSGFINELGFETYQKILQEAIVELKENEFSELYHTAEEDKTYLTDTQIDTDF 965
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
P Y+N + + + NE ++ L Q+ +L ++GK P LL + V
Sbjct: 966 ELLFPDTYVNRVAERLNLYNELSNLPNEE--ALQQYQRNLTDRFGKLPPQAIDLLNSVRV 1023
Query: 557 RRMAADIGITK-IYASGKMVG 576
+ +A +GI K + +GKM G
Sbjct: 1024 KWLATRMGIEKLVMKNGKMTG 1044
>gi|114565647|ref|YP_752801.1| transcription-repair coupling factor [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114336582|gb|ABI67430.1| Transcription-repair coupling factor - superfamily II helicase
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 1073
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 233/567 (41%), Positives = 350/567 (61%), Gaps = 12/567 (2%)
Query: 16 FCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-- 73
+ + + K PR L+KL +AWER + K +IQ + DL++LY HR + R Y
Sbjct: 473 LLFKYTSSGDKEPR-LNKLG-GSAWERTRKKVAQSIQDLAEDLLQLYAHR--ESREGYAF 528
Query: 74 -PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 132
P P ++F +FP+ TPDQ KA +V++D+ R PMDRL+CGDVG+GKTEV LRA
Sbjct: 529 SPDTPWQSQFEDEFPFRETPDQLKAINEVKKDMETRR-PMDRLVCGDVGYGKTEVFLRAA 587
Query: 133 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 192
F + GKQ +L PT VLA+QHF +ERF+ YP + + +LSRF+S +E++ ++ ++
Sbjct: 588 FKAIMDGKQVAILVPTTVLAEQHFQTFTERFAAYPAV-IEVLSRFRSNSEQKRIVEDLQK 646
Query: 193 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 252
G ++I++ TH LL V + +LGLLV+DEE RFGV QKEKI + K VDV++LSATPIPR
Sbjct: 647 GVVDIVIATHRLLSRDVKFKDLGLLVIDEEHRFGVAQKEKIKALKELVDVISLSATPIPR 706
Query: 253 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 312
+L++ALTG RD S+I TPPPER PI T++ +++E ++ A+ E++R GQVF+V RI+
Sbjct: 707 SLHMALTGLRDLSVIETPPPERYPITTYVLEYNEEIIVEAVMKEIERQGQVFFVHNRIED 766
Query: 313 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 372
+ + L + FPG+ IA+ HG+ +L M F G ++ +CT I+ESGLD+ N N
Sbjct: 767 IYRVKEQLDELFPGIKIAVGHGRMKEDELSRVMMDFVNGKYQLFLCTTIIESGLDMPNVN 826
Query: 373 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 432
TIIV + + GLAQLYQLRGRVGR+ + A+AYL Y ++S+ + +RL A+ E ELG
Sbjct: 827 TIIVDEADKMGLAQLYQLRGRVGRSHRLAYAYLTYRPDWVISEASQKRLNAIREFNELGS 886
Query: 433 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 492
G ++A +D+ IRG G I G +Q G + VG DL+ +L + ++ V Q+
Sbjct: 887 GMKIALRDLEIRGAGNILGAEQHGYIQAVGFDLYCRLLEQETGRLKGEQVQENRVDP-QL 945
Query: 493 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 552
DI+I+ +P YI + M + A Q+ ++ R +G P ++E L+
Sbjct: 946 DIDIDYYIPESYIPDSGSKMRIYRRLLLAGSQEEVEEIREEIRDR--FGPLPQAVENFLQ 1003
Query: 553 KLYVRRMAADIGITKIYASGKMVGMKT 579
+R +A D I + G+ + ++T
Sbjct: 1004 IAALRLLARDKEIKSLRRKGRQIEIQT 1030
>gi|424740019|ref|ZP_18168431.1| transcription-repair coupling factor [Lysinibacillus fusiformis ZB2]
gi|422946391|gb|EKU40802.1| transcription-repair coupling factor [Lysinibacillus fusiformis ZB2]
Length = 1170
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 228/557 (40%), Positives = 344/557 (61%), Gaps = 8/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
+ +E + P+ L KL W++ K K A+Q + DL++LY R +K + P N
Sbjct: 552 YVASEDREPK-LHKLG-GAEWKKAKAKVSSAVQDIADDLIKLYAKREAEKGHAFTPDNDD 609
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F A FPYE T DQ ++ ++V+RD+ ERE PMDRL+CGDVG+GKTEVA+RA F +
Sbjct: 610 QRNFEAMFPYEETEDQLRSIVEVKRDM-ERERPMDRLVCGDVGYGKTEVAIRAAFKAIQD 668
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ERF + I VGLLSRF+SK E+ L +K G ++I+
Sbjct: 669 GKQVAFLVPTTILAQQHYETIRERFQGFA-INVGLLSRFRSKKEQTATLKGLKEGRVDIV 727
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +L +++ +LGLL+VDEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++
Sbjct: 728 IGTHRILSKDLIFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSM 787
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ S V AI+ E+ RGGQVFY+ R++ + ++
Sbjct: 788 VGVRDLSVIETPPANRFPVQTYVMEHSGALVREAIEREMARGGQVFYLYNRVEDMARRVE 847
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+Q P I AHG+ +LE + F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 848 EIQVLVPEARIGFAHGKMTESELESVILAFLEGDYDVLVTTTIIETGVDIPNVNTLIVHD 907
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+ GLAQLYQLRGRVGR+++ A+AY Y +L+D A +RL A++E ELG GF++A
Sbjct: 908 ADRMGLAQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELGSGFKIAM 967
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG DL+ +ML +++++ + V ++I ++I+
Sbjct: 968 RDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLQDAIAE-RQTGVKKEEKPDIEILLSIDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P YI ++M KA +Q + + E L ++G P E LL+ ++
Sbjct: 1027 YIPDAYIPDGYQKIQMYKRI-KAMDQ-VEEYDEIMEELEDRFGDLPIETERLLRIARMKV 1084
Query: 559 MAADIGITKIYASGKMV 575
G+ + K++
Sbjct: 1085 WGLGAGVVSVKEKQKLI 1101
>gi|402838568|ref|ZP_10887073.1| transcription-repair coupling factor [Eubacteriaceae bacterium OBRC8]
gi|402272782|gb|EJU21998.1| transcription-repair coupling factor [Eubacteriaceae bacterium OBRC8]
Length = 1127
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 226/548 (41%), Positives = 343/548 (62%), Gaps = 7/548 (1%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQFPYEPTPDQK 95
+ W+++K K K A+ ++ L+ELY R QK + K+ EF A FP+E T DQ
Sbjct: 561 SNQWKKQKQKAKKAVDEIAKYLIELYAERENQKGYAFSKDTVWQREFEALFPFEETQDQL 620
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
K+ D++RD+ E PMDRLICGDVG+GKTEVALR IF KQ L PT +LA+QH
Sbjct: 621 KSIKDIKRDM-ENIRPMDRLICGDVGYGKTEVALRGIFKACMDQKQVAFLVPTTILAQQH 679
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
+ +S+RF YP I V +LSRF++K E+E+ ++ IK+G +++++GTH LL V + N+G
Sbjct: 680 YKTLSDRFENYP-INVDVLSRFKTKKEQEKTVEKIKNGEVDVVIGTHRLLSKDVEFKNIG 738
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
+LV+DEEQRFGVK KEKI K ++DVLTL+ATPIPRTL ++L+G RD S++ PP +R
Sbjct: 739 MLVIDEEQRFGVKHKEKIKQMKSNIDVLTLTATPIPRTLNMSLSGIRDMSVLEEPPNDRY 798
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P+ T+++ + ++ AI+ E+ R GQVF+V I+ +++ +F+Q+ P IAIAHGQ
Sbjct: 799 PVITYVTEAREGIILDAIEREMARNGQVFFVYNSIENIDKMYNFIQKLVPSARIAIAHGQ 858
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
+ LE+ M + + +L+CT I+E+G+DI NANTIIV + + GL+QLYQLRGRVG
Sbjct: 859 MSAIALEDIMMDYLEKKYDVLLCTTIIETGMDISNANTIIVYNADKMGLSQLYQLRGRVG 918
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+ ++A+AYL Y +L++ A +RL A+ E E G GF++A D+ IRG G I GE Q
Sbjct: 919 RSSRQAYAYLMYEKDKVLTEIAQKRLKAIREFTEFGSGFRVAMMDLEIRGSGNILGEVQH 978
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMV 515
G + VG DL+ +ML +S +++ V S ++ +N+N +P +YI ME+
Sbjct: 979 GHIEEVGYDLYIKMLNDSFNRLKGKTVEEKV--STEVYLNVNAYIPDDYIEDEIQKMEIY 1036
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 575
+ ++ + +Q + ++ P +E LLK +R + I + KI + +
Sbjct: 1037 KKIASINSKEDYFDIQ--AEIEDRFSDIPQEVENLLKISSIRSLGEKIRVVKISQKNRNI 1094
Query: 576 GMKTNMNK 583
+T K
Sbjct: 1095 VYETKTQK 1102
>gi|418577116|ref|ZP_13141243.1| transcription-repair coupling factor [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379324396|gb|EHY91547.1| transcription-repair coupling factor [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 1170
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 233/559 (41%), Positives = 358/559 (64%), Gaps = 11/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E K P+ L+KL T W++ K K + +++ M +L+ELY + ++ Y P
Sbjct: 552 YVASEDKSPK-LNKLG-GTEWKKTKAKVQQSVEDMADELIELY--KAREMSVGYKFGPDT 607
Query: 80 AE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136
AE F FPYE TPDQ K+ ++++D+ E E PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 AEQNDFEIDFPYELTPDQSKSIEEIKQDM-EIERPMDRLLCGDVGYGKTEVAVRAAFKAV 666
Query: 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 196
GKQ L PT +LA+QH++ + ER +P I+V L+SRF++ E +E + +K G ++
Sbjct: 667 MEGKQVAFLVPTTILAQQHYETLIERMQDFP-IEVQLISRFRTTKEVKETKEGLKSGFVD 725
Query: 197 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 256
I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I S K +VDVLTL+ATPIPRTL++
Sbjct: 726 IVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKSLKNNVDVLTLTATPIPRTLHM 785
Query: 257 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 316
++ G RD S+I TPP R P++T++ + + A++ E+ R GQVFY+ +++ + E
Sbjct: 786 SMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALEREISRDGQVFYLYNKVQSIYEK 845
Query: 317 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 376
+ LQ P +I +AHGQ R LEETM F I++ T I+E+G+D+ NANT+I+
Sbjct: 846 REQLQMLMPDANIGVAHGQMNERDLEETMLSFINHEYDIIVTTTIIETGVDVPNANTLII 905
Query: 377 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 436
+D +FGL+QLYQLRGRVGR+ + +AY +P +LS+ A +RL A++E ELG GF++
Sbjct: 906 EDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLSETAEDRLQAIKEFTELGSGFKI 965
Query: 437 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI 496
A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ ++I++NI
Sbjct: 966 AMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGVKAEKQDAPEIEIELNI 1025
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
+ LP+EYI + ++ +E+ + K + LM + L ++ P +E LL+ + +
Sbjct: 1026 DAYLPAEYIPNEQSKIEIYKKLRKIESE--TQLMDVKDELIDRFNDYPIEVERLLEMMEI 1083
Query: 557 RRMAADIGITKIYASGKMV 575
+ A G+T I GK V
Sbjct: 1084 KVHALHAGVTLIKDVGKQV 1102
>gi|254977126|ref|ZP_05273598.1| transcription-repair coupling factor [Clostridium difficile
QCD-66c26]
gi|255094455|ref|ZP_05323933.1| transcription-repair coupling factor [Clostridium difficile CIP
107932]
gi|255316206|ref|ZP_05357789.1| transcription-repair coupling factor [Clostridium difficile
QCD-76w55]
gi|255518868|ref|ZP_05386544.1| transcription-repair coupling factor [Clostridium difficile
QCD-97b34]
gi|255652047|ref|ZP_05398949.1| transcription-repair coupling factor [Clostridium difficile
QCD-37x79]
gi|260685021|ref|YP_003216306.1| transcription-repair coupling factor [Clostridium difficile CD196]
gi|260688679|ref|YP_003219813.1| transcription-repair coupling factor [Clostridium difficile R20291]
gi|384362695|ref|YP_006200547.1| transcription-repair coupling factor [Clostridium difficile BI1]
gi|260211184|emb|CBA66656.1| transcription-repair coupling factor [Clostridium difficile CD196]
gi|260214696|emb|CBE07346.1| transcription-repair coupling factor [Clostridium difficile R20291]
Length = 1128
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 229/540 (42%), Positives = 340/540 (62%), Gaps = 10/540 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYE 89
L+KL T W + K K K I+ M DL+ELY R K + + K+ P AEF + FPY+
Sbjct: 557 LNKLG-TNEWTKAKAKVKKEIEDMTKDLIELYAKREKIQGYKFSKDTPWQAEFESLFPYQ 615
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
T DQ KA + ++D+ E MDRL+CGDVG+GKTEVA+R+IF KQ VL PT
Sbjct: 616 ETEDQLKAIEETKKDM-ESSKVMDRLVCGDVGYGKTEVAIRSIFKACMDQKQVAVLVPTT 674
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH++ ERF YP ++V +LSRF++ ++++ ++ K G ++I++GTH ++ +
Sbjct: 675 ILAQQHYNTFKERFENYP-LRVEVLSRFKTPKQQKQIIEDAKKGLVDILIGTHRIISKDI 733
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
NLGL+V+DEEQRFGVK KE + K +VDVLTLSATPIPRTL+++L+G RD S+I
Sbjct: 734 NLPNLGLVVIDEEQRFGVKHKEALKKIKSTVDVLTLSATPIPRTLHMSLSGIRDMSVIEE 793
Query: 270 PPPERLPIKTHLSAFSKEKVI-SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
PP ER P+ T+++ SKE VI I+ EL RGGQVF+V R++ +EE +Q+ P
Sbjct: 794 PPQERHPVITYVTE-SKESVIQDEIERELSRGGQVFFVYNRVEHIEEMASMIQKLVPDAR 852
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+A+AHG+ S+ LE + F +L+CT I+E+G+DI NANT+I+ D + GLAQLY
Sbjct: 853 VAVAHGRMTSKSLENIILGFLNKDYDVLVCTTIIETGMDISNANTMIIYDADKMGLAQLY 912
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
QLRGRVGR+ ++ +AYL Y LS+ A +RL A+ E E G GF++A +D+ IRG G
Sbjct: 913 QLRGRVGRSSRQGYAYLLYEKDKTLSEIAEKRLKAIREFTEFGSGFKIAMRDLEIRGAGN 972
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHL 508
I G QQ G + +G DL+ +ML +++ KV + V V+ID+++N +P YI
Sbjct: 973 ILGSQQHGHMAVIGYDLYVKMLNDAIKKVKGEPI--VEEIDVEIDLSVNAYIPDNYIKDE 1030
Query: 509 ENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+EM + A+ ++ ++ E L ++ P ++ LL Y++ + + I KI
Sbjct: 1031 LIKIEMYKKI--ASIENKEDMLDIQEELEDRFSDIPKPVQTLLTIAYIKSLCKILKIEKI 1088
>gi|126701125|ref|YP_001090022.1| transcription-repair coupling factor (TRCF ATP-dependent helicase
mfd) [Clostridium difficile 630]
gi|255102711|ref|ZP_05331688.1| transcription-repair coupling factor [Clostridium difficile
QCD-63q42]
gi|255308532|ref|ZP_05352703.1| transcription-repair coupling factor [Clostridium difficile ATCC
43255]
gi|423080831|ref|ZP_17069448.1| transcription-repair coupling factor [Clostridium difficile
002-P50-2011]
gi|423087232|ref|ZP_17075621.1| transcription-repair coupling factor [Clostridium difficile
050-P50-2011]
gi|423090601|ref|ZP_17078890.1| transcription-repair coupling factor [Clostridium difficile
70-100-2010]
gi|115252562|emb|CAJ70405.1| Transcription-repair coupling factor (TRCF ATP-dependent helicase
mfd) [Clostridium difficile 630]
gi|357545170|gb|EHJ27150.1| transcription-repair coupling factor [Clostridium difficile
050-P50-2011]
gi|357552320|gb|EHJ34094.1| transcription-repair coupling factor [Clostridium difficile
002-P50-2011]
gi|357556305|gb|EHJ37920.1| transcription-repair coupling factor [Clostridium difficile
70-100-2010]
Length = 1128
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 229/540 (42%), Positives = 340/540 (62%), Gaps = 10/540 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYE 89
L+KL T W + K K K I+ M DL+ELY R K + + K+ P AEF + FPY+
Sbjct: 557 LNKLG-TNEWTKAKAKVKKEIEDMTKDLIELYAKREKIQGYKFSKDTPWQAEFESLFPYQ 615
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
T DQ KA + ++D+ E MDRL+CGDVG+GKTEVA+R+IF KQ VL PT
Sbjct: 616 ETEDQLKAIEETKKDM-ESSKVMDRLVCGDVGYGKTEVAIRSIFKACMDQKQVAVLVPTT 674
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH++ ERF YP ++V +LSRF++ ++++ ++ K G ++I++GTH ++ +
Sbjct: 675 ILAQQHYNTFKERFENYP-LRVEVLSRFKTPKQQKQIIEDAKKGLVDILIGTHRIISKDI 733
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
NLGL+V+DEEQRFGVK KE + K +VDVLTLSATPIPRTL+++L+G RD S+I
Sbjct: 734 NLPNLGLVVIDEEQRFGVKHKEALKKIKSTVDVLTLSATPIPRTLHMSLSGIRDMSVIEE 793
Query: 270 PPPERLPIKTHLSAFSKEKVI-SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
PP ER P+ T+++ SKE VI I+ EL RGGQVF+V R++ +EE +Q+ P
Sbjct: 794 PPQERHPVITYVTE-SKESVIQDEIERELSRGGQVFFVYNRVEHIEEMASMIQKLVPDAR 852
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+A+AHG+ S+ LE + F +L+CT I+E+G+DI NANT+I+ D + GLAQLY
Sbjct: 853 VAVAHGRMTSKSLENIILGFLNKDYDVLVCTTIIETGMDISNANTMIIYDADKMGLAQLY 912
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
QLRGRVGR+ ++ +AYL Y LS+ A +RL A+ E E G GF++A +D+ IRG G
Sbjct: 913 QLRGRVGRSSRQGYAYLLYEKDKTLSEIAEKRLKAIREFTEFGSGFKIAMRDLEIRGAGN 972
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHL 508
I G QQ G + +G DL+ +ML +++ KV + V V+ID+++N +P YI
Sbjct: 973 ILGSQQHGHMAVIGYDLYVKMLNDAIKKVKGEPI--VEEIDVEIDLSVNAYIPDNYIKDE 1030
Query: 509 ENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+EM + A+ ++ ++ E L ++ P ++ LL Y++ + + I KI
Sbjct: 1031 LIKIEMYKKI--ASIENKEDMLDIQEELEDRFSDIPKPVQTLLTIAYIKSLCKILKIEKI 1088
>gi|219128770|ref|XP_002184578.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404028|gb|EEC43977.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 942
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 235/551 (42%), Positives = 345/551 (62%), Gaps = 17/551 (3%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN--PAIAEFAAQFPYEPTPDQKK 96
AW + K K + ++ D++ LY R +R P+ + + EF+ F YEPT DQKK
Sbjct: 219 AWSKAKQKVEENTLQLAQDVLALYATRETLQRQPFDPSVEDVVQEFSKSFLYEPTTDQKK 278
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
F ++E D+ R PMDRLICGDVGFGKTEVA+RA+F + G+QA +LAPT VLA QH+
Sbjct: 279 CFEEIENDMVWRSRPMDRLICGDVGFGKTEVAIRALFRSIINGRQAALLAPTGVLAAQHY 338
Query: 157 DVVSERF---SKYPDIKVGLLSRF---QSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV 210
+ +R ++Y +I + LL Q+KA +E + I+ G +IVGTH+LL + +
Sbjct: 339 KNIVKRMGPGTEY-NINIALLRGGMGKQTKAGRELRGE-IEGGKTQLIVGTHALLSNEMK 396
Query: 211 YNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTP 270
+ NLGLLVVDEEQRFGVKQKE++ +DVLTLSATPIPRTL ++L+G RD S I +P
Sbjct: 397 FKNLGLLVVDEEQRFGVKQKERLKLICDGIDVLTLSATPIPRTLQMSLSGIRDTSTIRSP 456
Query: 271 PPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIA 330
PP R P TH+ FS++ V +AI EL RGGQ +YV+PRI L+E +Q FPG+ I
Sbjct: 457 PPMRKPTVTHVQDFSEDIVKTAISTELARGGQCYYVVPRISMLDEAEQTIQSLFPGIRII 516
Query: 331 IAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 390
AHG+ EE + +FA+G +L+ T ++E+G+DI + NTI+VQ+ Q FG++ LYQL
Sbjct: 517 QAHGRMQRNGAEENVAEFAEGNYDVLLATTVIENGVDIPSVNTIVVQNSQAFGMSTLYQL 576
Query: 391 RGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIF 450
RGRVGR+DK+A AY Y ++S +++QA RL A+ E ELG GF +A +D+ IRG G++
Sbjct: 577 RGRVGRSDKQAFAYFLYREES-ITEQAAMRLQAIGELSELGSGFDVANRDLEIRGAGSLL 635
Query: 451 GEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLEN 510
G +Q+G VG DL+ ML +S+ K+ + VP ++ + +P S ++ +E
Sbjct: 636 GTEQSGMAAKVGFDLYMRMLKKSIRKLRGLDLPLVPRTNILFPTDGSPSTFSLPMSFIER 695
Query: 511 PMEMVNEAEKAA-EQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV----RRMAAD-IG 564
E +E KA + L+ T + +YG P +++ LK L++ RR+ D +G
Sbjct: 696 QSERRSEETKARLAESTSALVTLTNEWKSKYGSLPSTLQNQLKTLHLHACTRRLGIDLVG 755
Query: 565 ITKIYASGKMV 575
+ ++ +GK +
Sbjct: 756 LVDVFGNGKRI 766
>gi|354559300|ref|ZP_08978550.1| transcription-repair coupling factor [Desulfitobacterium
metallireducens DSM 15288]
gi|353542889|gb|EHC12349.1| transcription-repair coupling factor [Desulfitobacterium
metallireducens DSM 15288]
Length = 1176
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/524 (42%), Positives = 337/524 (64%), Gaps = 9/524 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ K K K +I++M +DL++LY R + + P N EF +FPYE TPDQ K+
Sbjct: 578 WKKVKNKAKSSIKEMAIDLVKLYAEREAVQGFAFSPDNVWQQEFEEKFPYEETPDQLKSI 637
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+V+ D+ R PMDRL+CGDVG+GKTEVALRA F V KQ VL PT +LA+QHF+
Sbjct: 638 QEVKHDMM-RLRPMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVAVLVPTTILAQQHFNT 696
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
ERF+ YP + + +LSRF++ E++ + +K G+++IIVGTH L+ V + +LGLLV
Sbjct: 697 FRERFTGYP-VTIEMLSRFRTAKEQKVIIQGLKEGNIDIIVGTHRLISDAVKFKDLGLLV 755
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEK+ + K +VDVLTLSATPIPRTL+++L G RD S+I TPP +R P++
Sbjct: 756 IDEEQRFGVTHKEKLKTLKANVDVLTLSATPIPRTLHMSLVGVRDMSVIETPPEDRYPVQ 815
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T+++ F + V AI+ E+ RGGQVF+V R++ +E+ + FL Q P V IAHGQ
Sbjct: 816 TYVAEFRPDLVRDAIRREIQRGGQVFFVHNRVEDMEQVVHFLSQLVPEVRFGIAHGQMSE 875
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
LE+ M F + +L+CT I+E+GLD+ N NT+I+ + + GL QLYQLRGRVGR++
Sbjct: 876 TVLEKEMISFLEHENDVLVCTTIIETGLDMPNVNTLIIDESDRLGLGQLYQLRGRVGRSN 935
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
++A+AY Y + +L++ A +RLAA+ E E G G ++A +D+ IRG G + G QQ G +
Sbjct: 936 RKAYAYFLYKPQKVLTEVAEKRLAAIREFTEFGSGLRIAMRDLEIRGAGNLIGAQQHGQL 995
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE- 517
VG +L+ +ML E++ ++ V S I++ ++ +P EYI + +
Sbjct: 996 AAVGFELYSQMLKEAVLEIKGEKVEDKIEPS--IEVQVDAFIPDEYIADRQVKASLYQRL 1053
Query: 518 AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
+AE++ L + L ++G P +E LLK + ++ +AA
Sbjct: 1054 VMISAEEE---LSDMVDELIDRFGNPPREVENLLKIIRIKWIAA 1094
>gi|429750096|ref|ZP_19283161.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
332 str. F0381]
gi|429166023|gb|EKY08039.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
332 str. F0381]
Length = 1117
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/561 (39%), Positives = 345/561 (61%), Gaps = 16/561 (2%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQ 85
+P + KL + AW+ K K K ++++ +L++LY R + + + + + E A
Sbjct: 497 KPPKIYKLG-SGAWKALKQKTKARVKEIAFNLIQLYAKRKEAQGYAFAHDSYMQHELEAS 555
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V GKQ VL
Sbjct: 556 FLYEDTPDQSKATAEVKADM-ESTKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVL 614
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT VLA QH+ S+R +P +++ L+RF++ EK+ L+ + G L+I++GTH ++
Sbjct: 615 VPTTVLAFQHYQTFSQRMKDFP-VRIDYLNRFRTAKEKKIILEELAKGQLDIVIGTHQIV 673
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L RD S
Sbjct: 674 GEKVQYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLS 733
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+TPPP R PI + + FS+E + I+YE+ RGGQVF++ R++ + E +Q+ P
Sbjct: 734 VINTPPPNRYPIDSQVIPFSEEVIRDGIRYEIQRGGQVFFMHNRVENIREVAGMIQRLLP 793
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
IAI HGQ ++LEETM F +GA +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 794 DARIAIGHGQMEGKKLEETMLAFMEGAYDVLVATTIIESGLDVPNANTIFINNAHNFGLS 853
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG G +A KD+ IRG
Sbjct: 854 DLHQMRGRVGRSNKKAFCYFITPPLIAMSDDARKRIEAIAQFSDLGSGLNIAMKDLEIRG 913
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYK---------SVQIDINI 496
G + G +Q+G + +G D + ++L E+++++ E+ ++ + QID +
Sbjct: 914 AGDLLGGEQSGFINEIGFDTYQKILQEAITELKENEFSALYHTEEENKTYLVDTQIDTDF 973
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
P Y+N + + + NE ++D L ++ +L ++GK P LL + V
Sbjct: 974 ELLFPDTYVNRVAERLNLYNELSNITDED--ALQKYERNLIDRFGKLPPQAIDLLNSVRV 1031
Query: 557 RRMAADIGITK-IYASGKMVG 576
+ +A +GI K + +GKM G
Sbjct: 1032 KWLATRMGIEKLVMKNGKMTG 1052
>gi|421075906|ref|ZP_15536910.1| transcription-repair coupling factor [Pelosinus fermentans JBW45]
gi|392526018|gb|EIW49140.1| transcription-repair coupling factor [Pelosinus fermentans JBW45]
Length = 1089
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 230/618 (37%), Positives = 377/618 (61%), Gaps = 18/618 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E PR L+K+ + W + K K + A+ M +L+E+Y R + P P E
Sbjct: 485 SEGDAPR-LNKMGGSD-WLKAKGKAEKAVADMAKELLEIYAQRKVASGFAFDPDTPWQKE 542
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPYE TPDQ A ++++ D+ E+ PMDRL+CGDVGFGKTEVA+RA + V GKQ
Sbjct: 543 FEDAFPYEETPDQLSAIIEIKGDM-EKSQPMDRLLCGDVGFGKTEVAIRAAYKAVMGGKQ 601
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT VLA+QH+ +S RFS + + V ++SRF++ E+ ++ + G +++++GT
Sbjct: 602 VAILVPTTVLAQQHYQTISARFSGFGPV-VDVISRFRNAREQRATVEALASGQVDVLIGT 660
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L S V++ N+GLL+VDEEQRFGVKQKEK+ + +DVLTLSATPIPRTL+++L G
Sbjct: 661 HRILQSDVIFKNIGLLIVDEEQRFGVKQKEKLKKWSAGIDVLTLSATPIPRTLHMSLVGA 720
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP ER P+++++ +++E + AIK EL RGGQV++V R++ +++ L
Sbjct: 721 RDMSIIETPPEERFPVQSYVVEYNEEVMRDAIKRELKRGGQVYFVYNRVQTIDKMYRRLA 780
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I +AHGQ LE+ M F +G +L+CT+I+E+GLD+ NANTIIV D
Sbjct: 781 EMLPDAKIRVAHGQMPEEMLEQAMLDFYEGTDDVLLCTSIIENGLDVPNANTIIVYDADH 840
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
FGL+QLYQ+RGRVGR+ + A AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 841 FGLSQLYQMRGRVGRSHRMAFAYFTYRQDKVLTEVAEKRLQAIKEFAELGAGFKIAMRDL 900
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG +++ +L E++ ++ + P + V ++ N++ +
Sbjct: 901 EIRGAGNLLGSQQHGHIVSVGFEMYCRLLDEAVQQLKTGQTLETPVEPV-LEFNVDAYIS 959
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
+YI+ + +E+ AA ++ + + L ++G+ P + LL+ + ++ +
Sbjct: 960 GDYISDAMHKIEIYQRI--AACRNEKHISDLVDELIDRFGEPPSCVLNLLEVVKIKNFSR 1017
Query: 562 DIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
IGI + + + K N+ + + ++ + V + EG ++K +++
Sbjct: 1018 AIGIRSVIQQPNYIEVAFIDKPNVKPEQIMALKEAFPARV---MIYPEGIRLKT---VQI 1071
Query: 618 PREQLLNWIFQCLAELYA 635
++LLNW+ + L +
Sbjct: 1072 SNDKLLNWLVKVFTTLVS 1089
>gi|386756634|ref|YP_006229850.1| transcription-repair coupling factor [Bacillus sp. JS]
gi|384929916|gb|AFI26594.1| transcription-repair coupling factor [Bacillus sp. JS]
Length = 1177
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/541 (40%), Positives = 341/541 (63%), Gaps = 12/541 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + E
Sbjct: 558 SEGKEPK-LYKLGGS-EWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPDHEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 616 FESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETIKERFQDYP-INIGLLSRFRTRKEANETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVTYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + + +++ +ID+ ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFET-EIDVELDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK----KLYVR 557
YI + ++M A I + + + ++G P +E L K+Y R
Sbjct: 1033 ETYIQDGKQKIDMYKRFRSVA--TIEEKNELQDEMIDRFGNYPKEVEYLFTVAEMKVYAR 1090
Query: 558 R 558
+
Sbjct: 1091 Q 1091
>gi|333922335|ref|YP_004495915.1| transcription-repair coupling factor [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|333747896|gb|AEF93003.1| transcription-repair coupling factor [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 1169
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 231/546 (42%), Positives = 344/546 (63%), Gaps = 9/546 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E P+ LS+L T W + K K K A++ M +L+ELY R K + P P AEF
Sbjct: 562 EADHPK-LSRLGGTE-WAKAKAKVKEAVRDMAKELLELYAARQTVKGHAFSPDTPWQAEF 619
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
AQFPYE TPDQ +A +V+RD+ E+E PMDRL+CGDVG+GKTEVALRA F V KQ
Sbjct: 620 EAQFPYEETPDQLRAIAEVKRDM-EKERPMDRLLCGDVGYGKTEVALRAAFKAVMDNKQV 678
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
VL PT +LA+QH++ ERF+ YP I++ +LSRF++ E+ + L + G +++++GTH
Sbjct: 679 AVLVPTTILAQQHYNTFRERFANYP-IRIEMLSRFRTPKEQRQVLAGLATGEVDVVIGTH 737
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
L+ V++ +LGLLVVDEEQRFGV KE++ + +VDVLTL+ATPIPRTL+++L G R
Sbjct: 738 RLVQDDVIFKDLGLLVVDEEQRFGVAHKERLKQMRKNVDVLTLTATPIPRTLHMSLVGVR 797
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S++ TPP ER P++T++ + AI+ EL+RGGQV++V R+ L+ +LQ
Sbjct: 798 DTSVLETPPEERFPVQTYVLEEDPTLIREAIRRELNRGGQVYFVHNRVMDLDRLAGWLQD 857
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P IA+AHGQ +LE+ M +F GA +L+CT IVE+GLDI N NT+IV+D F
Sbjct: 858 LVPEARIAVAHGQMKEDELEQIMLEFMDGAYDVLVCTTIVETGLDISNVNTLIVKDADHF 917
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY + +L++ + RL+A+ E E G GF++A +D+
Sbjct: 918 GLSQLYQLRGRVGRTNRLAYAYFLFRRDKVLTEVSERRLSAIREFTEFGSGFKIAMRDLE 977
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G I G +Q G + VG DL+ +L E++ + V P + +++ + +P
Sbjct: 978 IRGAGNILGAEQHGHIAEVGFDLYCRLLEEAVHEARGEKV-EQPVDTA-VELPVEAYIPD 1035
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
+Y+ +E+ A +++ + E L ++G P S++ LLK ++ + +
Sbjct: 1036 QYVPDGNQKVELYRRL--AGMRELSEIADMEEELVDRFGDLPESVQNLLKVTALKILGSQ 1093
Query: 563 IGITKI 568
+ I I
Sbjct: 1094 LKIKSI 1099
>gi|420150504|ref|ZP_14657662.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
335 str. F0486]
gi|394751907|gb|EJF35636.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
335 str. F0486]
Length = 1109
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/561 (39%), Positives = 344/561 (61%), Gaps = 16/561 (2%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQ 85
+P + KL + AW+ K K K ++++ +L++LY R + K Y + + E A
Sbjct: 489 KPPKIYKLG-SGAWKALKQKTKTRVKEIAFNLIQLYAKRKESKGYAYSHDSYMQNELEAS 547
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V GKQ VL
Sbjct: 548 FLYEDTPDQSKATAEVKADM-ESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVL 606
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT VLA QHF S+R +P +++ L+RF++ EK+ L+ + +G L+II+GTH ++
Sbjct: 607 VPTTVLAFQHFQTFSQRMKDFP-VRIDYLNRFRTAKEKKIILEELANGQLDIIIGTHQIV 665
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L RD S
Sbjct: 666 GEKVAYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLS 725
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+++TPPP R PI + + FS+E + I+YE+ RGGQVF++ R++ ++E +Q+ P
Sbjct: 726 VMNTPPPNRYPIDSQVVPFSEEIIRDGIRYEIQRGGQVFFMHNRVENIQEVAGMIQRLLP 785
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
+AI HGQ ++LEETM F GA +L+ T I+E+GLD+ NANTI + + FGL+
Sbjct: 786 DARVAIGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNAHNFGLS 845
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG G +A KD+ IRG
Sbjct: 846 DLHQMRGRVGRSNKKAFCYFITPPLVAMSDDARKRIEAIAQFSDLGSGLNIAMKDLEIRG 905
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---------VQIDINI 496
G + G +Q+G + +G + + ++L E++ ++ E+ + + + QID +
Sbjct: 906 AGDLLGGEQSGFINELGFETYQKILQEAIVELKENEFSELYHTAEEDKTYLTDTQIDTDF 965
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
P Y+N + + + NE ++ L Q+ +L ++GK P LL + V
Sbjct: 966 ELLFPDTYVNRVAERLNLYNELSNLPNEE--ALQQYQRNLTDRFGKLPPQAIDLLNSVRV 1023
Query: 557 RRMAADIGITK-IYASGKMVG 576
+ +A +GI K + +GKM G
Sbjct: 1024 KWIATRMGIEKLVMKNGKMTG 1044
>gi|393780177|ref|ZP_10368397.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
412 str. F0487]
gi|392608819|gb|EIW91653.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
412 str. F0487]
Length = 1109
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/561 (39%), Positives = 343/561 (61%), Gaps = 16/561 (2%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQ 85
+P + KL + AW+ K K K ++++ +L++LY R + K Y + + E A
Sbjct: 489 KPPKIYKLG-SGAWKALKQKTKTRVKEIAFNLIQLYAKRKESKGYAYSHDSYMQNELEAS 547
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V GKQ +L
Sbjct: 548 FLYEDTPDQSKATAEVKADM-ESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAIL 606
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT VLA QHF S+R +P +++ L+RF++ EK+ L+ + G L+II+GTH ++
Sbjct: 607 VPTTVLAFQHFQTFSQRMKDFP-VRIDYLNRFRTAKEKKIILEELAKGQLDIIIGTHQIV 665
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L RD S
Sbjct: 666 GEKVAYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLS 725
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+TPPP R PI + + FS+E + I+YE+ RGGQVF++ R++ ++E +Q+ P
Sbjct: 726 VINTPPPNRYPIDSQVVPFSEEVIRDGIRYEIQRGGQVFFMHNRVENIQEVAGMIQRLLP 785
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
IAI HGQ ++LEETM F GA +L+ T I+E+GLD+ NANTI + + FGL+
Sbjct: 786 DARIAIGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNAHNFGLS 845
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG G +A KD+ IRG
Sbjct: 846 DLHQMRGRVGRSNKKAFCYFITPPLVAMSDDARKRIEAIAQFSDLGSGLNIAMKDLEIRG 905
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---------VQIDINI 496
G + G +Q+G + +G + + ++L E++ ++ E+ + + + QID +
Sbjct: 906 AGDLLGGEQSGFINELGFETYQKILQEAIVELKENEFSELYHTAEEDKTYLTDTQIDTDF 965
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
P Y+N + + + NE ++ L Q+ +L ++GK P LL + V
Sbjct: 966 ELLFPDTYVNRVAERLNLYNELSNLPNEE--ALQQYQRNLTDRFGKLPPQAIDLLNSVRV 1023
Query: 557 RRMAADIGITK-IYASGKMVG 576
+ +A +GI K + +GKM G
Sbjct: 1024 KWIATRMGIEKLVMKNGKMTG 1044
>gi|150014978|ref|YP_001307232.1| transcription-repair coupling factor [Clostridium beijerinckii NCIMB
8052]
gi|149901443|gb|ABR32276.1| transcription-repair coupling factor [Clostridium beijerinckii NCIMB
8052]
Length = 1166
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 232/581 (39%), Positives = 366/581 (62%), Gaps = 15/581 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K P+ ++KL + W++ K K + +I ++ DL++LY R K + K+ +
Sbjct: 560 SEGKSPK-VNKLG-SAEWQKAKAKARKSINEIAEDLVKLYAMRSTVKGHKFSKDTEWQKQ 617
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F +FP+E TPDQ + +++ D+ E + PMDRL+CGDVG+GKTEVA+RA F V GKQ
Sbjct: 618 FEDEFPFEETPDQLTSLEEIKIDM-ESDKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQ 676
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH+ + RFS +P IK+ ++SRF++ +++E L +K G+L+I++GT
Sbjct: 677 VALLVPTTILAEQHYKNIKNRFSDFP-IKIDMVSRFRTAKQQKEILQKVKEGNLDILIGT 735
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H L+ + + +LGLL+VDEEQRFGVKQKEKI K +VDVLTLSATPIPRTL+++L+G
Sbjct: 736 HRLVSKDIQFKDLGLLIVDEEQRFGVKQKEKIKGIKKNVDVLTLSATPIPRTLHMSLSGV 795
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP ER P++T++ + + + AI E+ RGGQV++V R++ +E ++Q
Sbjct: 796 RDISVIETPPEERYPVQTYVVEQNDQLIRDAILREIGRGGQVYFVYNRVEDIERMAKYVQ 855
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + IAHGQ RQLE+ M F +L+CT I+E+G+DIQN NTII+ D +
Sbjct: 856 SLVPESKVGIAHGQMAERQLEKEMFDFMSEEYNVLVCTTIIETGMDIQNVNTIIIYDADK 915
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AYL Y +L++ A +RL AL++ ELG GF++A +D+
Sbjct: 916 MGLSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALKDFTELGSGFKIAMRDL 975
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G Q G + ++G DL+ ML E K+ + + P ++ +DI ++ +
Sbjct: 976 EIRGAGNMMGSSQHGHMASIGYDLYCRML-EDTVKLLKGEIQKEPIETT-LDIKVDAFIS 1033
Query: 502 SEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
N++E+ ++ + +K AA + + E L +Y K P + L+ Y++ A
Sbjct: 1034 E---NYIEDEIQKIEVYKKIAAIEGLDDYSDIKEELEDRYSKIPEPVYNLMDIAYIKSRA 1090
Query: 561 ADIGITKIYASGKMVGMKTNMN----KKVFKMMIDSMTSEV 597
I I +I + K + K + K +FK++++ + V
Sbjct: 1091 KSIFIEEIKETPKELLFKFSQGESEYKNIFKILMEKYKNSV 1131
>gi|379020273|ref|YP_005296935.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M013]
gi|359829582|gb|AEV77560.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M013]
Length = 1168
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/562 (40%), Positives = 358/562 (63%), Gaps = 13/562 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VDEHCVISVPYKSVQIDIN 495
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ + E VP V++D+N
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEQES-EVP--EVEVDLN 1022
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
++ LP+EYI + + +E+ + K D ++ + L ++ P + LL +
Sbjct: 1023 LDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVE 1080
Query: 556 VRRMAADIGITKIYASGKMVGM 577
++ A GIT I GK++ +
Sbjct: 1081 IKVHALHSGITLIKDKGKIIDI 1102
>gi|424768344|ref|ZP_18195629.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CM05]
gi|402348618|gb|EJU83599.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CM05]
gi|408422939|emb|CCJ10350.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ST228]
gi|408424927|emb|CCJ12314.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ST228]
gi|408426916|emb|CCJ14279.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ST228]
gi|408428904|emb|CCJ26069.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ST228]
gi|408430892|emb|CCJ18207.1| Transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus ST228]
gi|408432886|emb|CCJ20171.1| Transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus ST228]
gi|408434875|emb|CCJ22135.1| Transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus ST228]
gi|408436860|emb|CCJ24103.1| Transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus ST228]
Length = 1168
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/559 (39%), Positives = 355/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++G+
Sbjct: 1084 HALHSGITLIKDKGKIIGI 1102
>gi|406672751|ref|ZP_11079976.1| transcription-repair coupling factor [Bergeyella zoohelcum CCUG
30536]
gi|405587295|gb|EKB61023.1| transcription-repair coupling factor [Bergeyella zoohelcum CCUG
30536]
Length = 1129
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/554 (40%), Positives = 344/554 (62%), Gaps = 21/554 (3%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPY 88
TLSKL + AW+ K K K ++++ DL++LY R K + P E A F Y
Sbjct: 507 TLSKLG-SPAWKNLKQKTKAKVKQIAFDLIKLYAKRKTAKGFAFTPDTYLQNELEASFLY 565
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
E TPDQ+KA DV++D+ E ET MDRL+CGDVGFGKTEVA+RA F V+ GKQ VL PT
Sbjct: 566 EDTPDQEKATADVKKDM-EAETIMDRLVCGDVGFGKTEVAIRAAFKAVTDGKQVAVLVPT 624
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
+LA QH+ ER +P + + L+RF++ +K+E L+ ++ G+L+I++GTH L+ +
Sbjct: 625 TILAFQHYRSFQERLKDFP-VNISYLNRFRTAKQKKETLERLESGNLDIVIGTHQLVSDK 683
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
V + +LGLL++DEE +FGV K+K+ + K ++D LTL+ATPIPRTL +L RD S+I
Sbjct: 684 VKFKDLGLLIIDEEHKFGVSVKDKLKTLKSNIDTLTLTATPIPRTLQFSLMAARDLSVIK 743
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
TPPP R P++T L F++E + AI YE+ R GQV+++ RI+ L+E +Q+ P
Sbjct: 744 TPPPNRQPVETQLIGFNEEVIRDAISYEIQRDGQVYFINNRIENLKEIAGLIQRLVPDAR 803
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+ HGQ ++LEE + F +G +L+ T IVESG+D+ NANTI + D Q+FG+A L+
Sbjct: 804 VITGHGQMDGKELEERILDFMEGKYDVLVSTTIVESGVDVPNANTIFINDAQKFGMADLH 863
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ+A KD+ IRG G
Sbjct: 864 QMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGD 923
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY-------------KSVQIDIN 495
+ G +Q+G + +G + + +++ E+L ++ + K V ID +
Sbjct: 924 LLGGEQSGFINEMGFEAYQKIMQEALKELQHEEDFDTLFEDKEDRKKLFKSTKEVNIDTD 983
Query: 496 INPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+ LP +YI+ +E + + + AE +QD L +F L ++G P + LLK +
Sbjct: 984 LELMLPDDYISSIEERLSLYQKLAEIQNKQD---LQRFGNELEDRFGAMPEEVINLLKSV 1040
Query: 555 YVRRMAADIGITKI 568
++ +AA+IG KI
Sbjct: 1041 ELKWLAAEIGFEKI 1054
>gi|374855224|dbj|BAL58086.1| transcription-repair coupling factor [uncultured prokaryote]
Length = 1154
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 236/562 (41%), Positives = 341/562 (60%), Gaps = 11/562 (1%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFA 83
+ RP TL++L T W K + + A+ + DL+ELY R + +P + P E
Sbjct: 532 SDRPPTLTRLG-TGEWAHTKRRVQRAVASIARDLLELYAKRQLARGFAFPPDTPWQLEME 590
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A FPY TPDQ A +V+RD+ E PMDRLICGDVGFGKTEVA+RA F V AGKQ
Sbjct: 591 AAFPYVETPDQLAAIQEVKRDM-ESPRPMDRLICGDVGFGKTEVAIRAAFKAVMAGKQVA 649
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
VL PT VLA+QH ER + +P +++ +LSRF+S+AE+ +D G ++I++GTH
Sbjct: 650 VLVPTTVLAEQHGRTFRERLAGFP-VRIEVLSRFRSEAEQRAIVDATARGEVDILIGTHR 708
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L V + +LGLLVVDEEQRFGV QKE++ + +DVL+LSATPIPRTL ++L+G RD
Sbjct: 709 ILQKDVQFKDLGLLVVDEEQRFGVAQKEQLKKMRTEIDVLSLSATPIPRTLQMSLSGIRD 768
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S I TPP +R P++T+++A+ E V AI EL RGGQV++V R++ + + L+
Sbjct: 769 MSTIMTPPEDRQPVRTYVTAWDDEIVREAIMRELQRGGQVYFVHNRVQSIGRVYERLRAL 828
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P IA+AHGQ QLE M +FA G +L+CT I+ESGLDI N NTIIV + G
Sbjct: 829 VPEARIAVAHGQMPEEQLERVMAEFAAGEHDVLLCTTIIESGLDIPNVNTIIVDQADRLG 888
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
LAQLYQLRGRVGR+D++A+AYL Y LS+ A RL A+ E +ELG G Q+A +D+ I
Sbjct: 889 LAQLYQLRGRVGRSDRQAYAYLLYSSNRALSEAAQRRLEAIFESQELGAGLQIALRDLEI 948
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV-----DEHCVISVPYKSVQIDININP 498
RG G + G +Q+G + VG +L+ ++L E++ + + + S +++ ++
Sbjct: 949 RGAGNLLGTEQSGYIAAVGFELYTKLLAEAVETLRRAYAGQPPLPSPAAPPPVVELPLSA 1008
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P EY+ E + + A + Q E LR ++G P +E LL +R
Sbjct: 1009 YVPEEYVP--EPRLRLAIYQRLAQASTTAAIAQLQEELRDRFGPLPEPVEHLLLLGLIRV 1066
Query: 559 MAADIGITKIYASGKMVGMKTN 580
+A + + A ++V ++
Sbjct: 1067 LAVRANVESVAADEEVVHIRVR 1088
>gi|357014642|ref|ZP_09079641.1| Mfd [Paenibacillus elgii B69]
Length = 1174
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/540 (41%), Positives = 336/540 (62%), Gaps = 13/540 (2%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI---AEFAAQFPYEPTPDQKK 96
W R K+K + ++Q + DL++LY R Q Y N EF FPYE T DQ +
Sbjct: 562 WNRVKSKARASVQDIADDLIKLYAER--QATLGYAFNHDSNYQQEFEGMFPYEETSDQLR 619
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F GKQ VL PT +LA+QH+
Sbjct: 620 AIEEIKKDM-EKPRPMDRLLCGDVGYGKTEVAIRAAFKAAIDGKQVAVLVPTTILAQQHY 678
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERFS YP + +LSRF+SK E+ E + IK+G +++++GTH LL V + +LGL
Sbjct: 679 ETFRERFSGYP-FNIQVLSRFRSKKEQTETMKGIKNGTVDVVIGTHRLLSKDVQFKDLGL 737
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P
Sbjct: 738 LIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFP 797
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T++ +S V AI+ EL R GQV+Y+ R++G+ + D + P + +AHGQ
Sbjct: 798 VQTYVVEYSASLVREAIERELAREGQVYYLFNRVQGITQMADQISMLVPDARVTVAHGQM 857
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
++LE+T+ F G +L+ T+I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR
Sbjct: 858 SEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQLRGRVGR 917
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+ IRG G + G +Q G
Sbjct: 918 SNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHG 977
Query: 457 DVGNVGVDLFFEMLFESLSK----VDEHCVISVPYKSVQIDININPRLPSEYINHLENPM 512
+ +VG DL+ +ML E + K + V S Q+DI ++ +P +YI +
Sbjct: 978 FIASVGFDLYSQMLAEEIQKRKKELGGEAVQETKVWSTQLDIQLDAYIPGDYIYDSVQKI 1037
Query: 513 EMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASG 572
E+ + AA Q + M+ + L ++G P +++ LL ++ A GI I G
Sbjct: 1038 EIYKKV--AAIQSLDEAMELEDELVDRFGDLPDAVQNLLTAARLKVYGALYGIEIISQKG 1095
>gi|375087626|ref|ZP_09733972.1| transcription-repair coupling factor [Dolosigranulum pigrum ATCC
51524]
gi|374563902|gb|EHR35206.1| transcription-repair coupling factor [Dolosigranulum pigrum ATCC
51524]
Length = 1174
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/478 (44%), Positives = 317/478 (66%), Gaps = 5/478 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQKK 96
T+WE+ K K ++ + DL+ELY R +QK YP + A EF A FPY T DQ +
Sbjct: 569 TSWEKTKRKVGSQVEDIADDLIELYAERERQKGYAYPADNAYQKEFEAAFPYSETDDQLR 628
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
+ +++ DL E + PMDRL+ GDVG+GKTEVALRAIF VV GKQA L PT VLA+QH+
Sbjct: 629 SAKEIKEDLQEAK-PMDRLLVGDVGYGKTEVALRAIFKVVQEGKQAAFLVPTTVLAQQHY 687
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ + ERF +P +++G+LSRF+++ E +E + +K G L+++VGTH LL +V+ +LGL
Sbjct: 688 ETMIERFVDFP-VEIGILSRFKTQKEVKETISQLKKGQLDVVVGTHRLLSKDIVFQDLGL 746
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LVVDEEQRFGVK KE++ K VDVLTL+ATPIPRTL++++ G RD S+I TPP R P
Sbjct: 747 LVVDEEQRFGVKHKERLKDMKTQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYP 806
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T++ + + AI+ E+ RGGQ+F++ R+K +E M LQ+ P I+ HGQ
Sbjct: 807 VQTYVMEMNSIVIREAIEREMARGGQIFFLHNRVKTIERRMFELQELVPDARISCIHGQM 866
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE + +F G +++ T I+E+G+D+ N NT+IV+D GL+QLYQLRGRVGR
Sbjct: 867 TETELENRLFEFLSGEYDVIVTTTIIETGVDMPNVNTLIVEDADHMGLSQLYQLRGRVGR 926
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ + A+AY + +L++ + RL A+++ ELG GF++A +D+ IRG G + G+QQ G
Sbjct: 927 SSRVAYAYFMHQPGKVLTEVSESRLQAIKDFTELGSGFKIAMRDLAIRGAGNLLGKQQHG 986
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEM 514
+ VG DL+ +ML E++ + + + +++ID+ IN LPS+YI +E+
Sbjct: 987 FIDAVGFDLYSQMLEEAVERKQNNG--KLKKTTLEIDVAINAYLPSDYIQDERQKIEL 1042
>gi|255657458|ref|ZP_05402867.1| transcription-repair coupling factor [Clostridium difficile
QCD-23m63]
gi|296449053|ref|ZP_06890843.1| transcription-repair coupling factor [Clostridium difficile NAP08]
gi|296879876|ref|ZP_06903849.1| transcription-repair coupling factor [Clostridium difficile NAP07]
gi|296262146|gb|EFH08951.1| transcription-repair coupling factor [Clostridium difficile NAP08]
gi|296429165|gb|EFH15039.1| transcription-repair coupling factor [Clostridium difficile NAP07]
Length = 1128
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 229/540 (42%), Positives = 340/540 (62%), Gaps = 10/540 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYE 89
L+KL T W + K K K I+ M DL+ELY R K + + K+ P AEF + FPY+
Sbjct: 557 LNKLG-TNEWTKAKAKVKKEIEDMTKDLIELYAKREKIQGYKFSKDTPWQAEFESLFPYQ 615
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
T DQ KA + ++D+ E MDRL+CGDVG+GKTEVA+R+IF KQ VL PT
Sbjct: 616 ETEDQLKAIEETKKDM-ESSKVMDRLVCGDVGYGKTEVAIRSIFKACMDQKQVAVLVPTT 674
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH++ ERF YP ++V +LSRF++ ++++ ++ K G ++I++GTH ++ +
Sbjct: 675 ILAQQHYNTFKERFENYP-LRVEVLSRFKTPKQQKQIIEDAKKGLVDILIGTHRIISKDI 733
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
NLGL+V+DEEQRFGVK KE + K +VDVLTLSATPIPRTL+++L+G RD S+I
Sbjct: 734 NLPNLGLVVIDEEQRFGVKHKEALKKIKSTVDVLTLSATPIPRTLHMSLSGIRDMSVIEE 793
Query: 270 PPPERLPIKTHLSAFSKEKVI-SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
PP ER P+ T+++ SKE VI I+ EL RGGQVF+V R++ +EE +Q+ P
Sbjct: 794 PPQERHPVITYVTE-SKESVIQDEIERELSRGGQVFFVYNRVEHIEEMASMIQKLVPDAR 852
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+A+AHG+ S+ LE + F +L+CT I+E+G+DI NANT+I+ D + GLAQLY
Sbjct: 853 VAVAHGRMTSKSLENIILGFLNKDYDVLVCTTIIETGMDISNANTMIIYDADKMGLAQLY 912
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
QLRGRVGR+ ++ +AYL Y LS+ A +RL A+ E E G GF++A +D+ IRG G
Sbjct: 913 QLRGRVGRSSRQGYAYLLYEKDKTLSEIAEKRLKAIREFTEFGSGFKIAMRDLEIRGAGN 972
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHL 508
I G QQ G + +G DL+ +ML +++ KV + V V+ID+++N +P YI
Sbjct: 973 ILGSQQHGHMAVIGYDLYVKMLNDAIKKVKGEPI--VEEIDVEIDLSVNAYIPDNYIKDE 1030
Query: 509 ENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+EM + A+ ++ ++ E L ++ P ++ LL Y++ + + I KI
Sbjct: 1031 LIKIEMYKKI--ASIENKEDMLDIQEELEDRFSDIPKPVQTLLTIAYIKSLCKILKIEKI 1088
>gi|407979088|ref|ZP_11159910.1| transcription-repair coupling factor [Bacillus sp. HYC-10]
gi|407414304|gb|EKF35957.1| transcription-repair coupling factor [Bacillus sp. HYC-10]
Length = 1177
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 226/574 (39%), Positives = 353/574 (61%), Gaps = 19/574 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + +
Sbjct: 558 SEGKEPK-LYKLGGSD-WKRVKKKVESSVQDIADDLIKLYAEREASKGYAFSPDHEMQRQ 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FESAFPYQETEDQIRSIHEIKQDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QHFD + +RF YP +K+ LSRF+++ E E L +K+G +++++GT
Sbjct: 675 VALLVPTTILAQQHFDTIMDRFQDYP-VKIAQLSRFRTRKETTETLKGLKNGTIDMVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL +VY +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDIVYKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P ++ AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDIPNVNTLIVHDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + ++ +ID+ I+ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGDTTAQEKFEP-EIDLQIDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI+ + +EM + A I + E + ++G+ P + L
Sbjct: 1033 DSYISDGKQKIEMYKQFR--AISSIEERKELQEEMIDRFGEYPQEVADLFT--------- 1081
Query: 562 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTS 595
I K+YA + V + M K + ++ +D S
Sbjct: 1082 -IATMKVYAVQERVEL-IKMEKGIVRLTLDEKAS 1113
>gi|402299308|ref|ZP_10818930.1| transcription-repair coupling factor [Bacillus alcalophilus ATCC
27647]
gi|401725512|gb|EJS98790.1| transcription-repair coupling factor [Bacillus alcalophilus ATCC
27647]
Length = 1179
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/533 (40%), Positives = 344/533 (64%), Gaps = 6/533 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAF 98
W++ K K + +++ + DL++LY R K + K+ P AEF A F Y+ T DQ +A
Sbjct: 574 WKKVKKKVQSSVEDIADDLIKLYAEREASKGYAFSKDGPEQAEFEASFQYQETEDQLRAI 633
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E+E PMDRL+CGDVG+GKTEVA+RA F ++ GKQ +L PT +LA+QH++
Sbjct: 634 EEIKEDM-EKERPMDRLLCGDVGYGKTEVAIRAAFKAINDGKQVAILVPTTILAQQHYET 692
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERFS+Y I +G+LSRF+S+ E+ L +K G ++++VGTH LL VV+ +LGLL+
Sbjct: 693 IKERFSEYA-INIGVLSRFRSRKEQTTTLKGLKAGSIDLVVGTHRLLSKDVVFKDLGLLI 751
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
VDEEQRFGV KEKI + K ++DVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 752 VDEEQRFGVTHKEKIKTLKANIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 811
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ + + AI+ EL RGGQ++++ R++ +E + + P ++ AHGQ
Sbjct: 812 TYVVENNAALIREAIERELTRGGQIYFLYNRVEDIERMTEQISNLVPDAKVSYAHGQMNE 871
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
R+LE + F +G +L+ T I+E+G+DI N NT+I+ D + GL+QLYQ+RGRVGR++
Sbjct: 872 RELEGVILDFLEGNSDVLVTTTIIETGVDIPNVNTLIIHDADKMGLSQLYQIRGRVGRSN 931
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G QQ G +
Sbjct: 932 RVAYAYFTYQRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNLLGSQQHGFI 991
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML E++ + P++ V++D+ I+ +P YI + +EM
Sbjct: 992 ESVGFDLYSQMLKEAIEERKGDKPKEKPFR-VELDVKIDAYIPESYIKDAKQKIEMYKRV 1050
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYAS 571
+ E I L + + ++G+ P ++E LL+ + ++ ++ I +I S
Sbjct: 1051 KGIEE--IKELQDLQDEMIDRFGEYPKNVEYLLRLTKIMLLSNELKIEQIVES 1101
>gi|365154885|ref|ZP_09351283.1| transcription-repair coupling factor [Bacillus smithii 7_3_47FAA]
gi|363628996|gb|EHL79689.1| transcription-repair coupling factor [Bacillus smithii 7_3_47FAA]
Length = 1175
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/549 (40%), Positives = 349/549 (63%), Gaps = 12/549 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ + KL + W+R K K + ++Q + DL++LY R K + P E
Sbjct: 559 SEGKEPK-IYKLGGS-EWKRVKKKVQSSVQDIADDLIKLYAEREASKGYAFSPDGDLQRE 616
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ ++ +++RD+ ERE PMDRL+CGDVG+GKTEVALRA F + GKQ
Sbjct: 617 FEAAFPYQETEDQLRSIQEIKRDM-ERERPMDRLLCGDVGYGKTEVALRAAFKAIMDGKQ 675
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +G+LSRF+++ + +E + IK+G ++I+VGT
Sbjct: 676 VAMLVPTTILAQQHYETMKERFRGYP-INIGMLSRFRTRKQIQETIKGIKNGTIDIVVGT 734
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V Y++LGLL+VDEEQRFGV KE+I K +VDVLTL+ATPIPRTL++++ G
Sbjct: 735 HRLLSKDVQYHDLGLLIVDEEQRFGVTHKERIKQLKTNVDVLTLTATPIPRTLHMSMLGV 794
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL R GQVF++ R++ +E + +
Sbjct: 795 RDLSIIETPPENRFPVQTYVMEYNGTVVREAIERELARDGQVFFLYNRVEDIERKAEEIS 854
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHGQ +LE+ + F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 855 LLVPDARVTYAHGQMTESELEDVILSFLEGEYDVLVTTTIIETGVDIPNVNTLIVYDADR 914
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL +++E ELG GF++A +D+
Sbjct: 915 MGLSQLYQLRGRVGRSNRIAYAYFMYRKDKVLSETAEKRLQSIKEFTELGSGFKIAMRDL 974
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS--VQIDININPR 499
IRG G + G QQ G + +VG DL+ +ML E+ ++E I+V K +++++I+
Sbjct: 975 SIRGAGNLLGPQQHGFIDSVGFDLYSQMLKEA---IEERKGITVEEKPPVFEVELDIDAY 1031
Query: 500 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 559
+P YI + +EM A + + + + E + ++G+ P +E L + ++
Sbjct: 1032 IPDAYIPDGQQKIEMYKRFR--ALETLEEVAELQEEMVDRFGEYPKEVEYLFRVAEMKIF 1089
Query: 560 AADIGITKI 568
A D+ + I
Sbjct: 1090 AKDVHLESI 1098
>gi|441496778|ref|ZP_20979005.1| Transcription-repair coupling factor [Fulvivirga imtechensis AK7]
gi|441439642|gb|ELR72957.1| Transcription-repair coupling factor [Fulvivirga imtechensis AK7]
Length = 1122
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 228/558 (40%), Positives = 346/558 (62%), Gaps = 17/558 (3%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQF 86
P +SKL + WE +K + K + + DL+ELY R + + K+ + E + F
Sbjct: 499 PPAISKLG-SPEWENKKKRVKKQVADIAKDLIELYAKRKQAPGYAFTKDSFLQTELESSF 557
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
Y+ TPDQ KA DV+ D+ +++ PMDRL+CGDVGFGKTEVA+RA F V+ KQ VL
Sbjct: 558 IYDDTPDQAKATEDVKEDM-QQQHPMDRLVCGDVGFGKTEVAIRAAFKAVTDNKQVAVLV 616
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA QH+ +R S +P +KV ++RF+S E +E L +K G +I++GTH ++
Sbjct: 617 PTTILAMQHYRTFKDRLSAFP-VKVEYINRFKSAKEIKETLKRVKEGKTDILIGTHRIVS 675
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
V + +LGLL++DEEQ+FGVK KEK+ +++VD LTL+ATPIPRTL+ +L G RD S+
Sbjct: 676 KDVQFKDLGLLIIDEEQKFGVKVKEKLKEMRVNVDALTLTATPIPRTLHFSLMGARDLSI 735
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
ISTPPP R P+ T L F++E + AI +EL RGGQVF+V R+ +E + + + P
Sbjct: 736 ISTPPPNRQPVTTELHTFNEEVIRDAISFELRRGGQVFFVHNRVNDIESVGNIILKLVPD 795
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
I IAHGQ LE+ M KF +G +L+ TNI+ESGLDI NANTII+ FGL+
Sbjct: 796 ARIGIAHGQMEGPVLEKAMLKFIEGEYDVLVSTNIIESGLDIPNANTIIINQAHMFGLSD 855
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+Q+RGRVGR++K+A YL P LS A +RL+ LEE +LG GF++A +D+ IRG
Sbjct: 856 LHQMRGRVGRSNKKAFCYLLTPPTIGLSSDARKRLSTLEEFSDLGDGFKVAMRDLDIRGA 915
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCV-------ISVPYKSVQIDININPR 499
G + G +Q+G + ++G D++ ++L E++ ++ + +S K + D NI
Sbjct: 916 GNLLGAEQSGFISDLGFDMYHKILDEAVQELKQTEFRDLFVKELSEAAKVLVQDCNIETD 975
Query: 500 L----PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
L P EY+ ++ + + ++ + +D L QF SL ++G P S++ L++ +
Sbjct: 976 LEVIIPDEYVANISERLGLYSQLDSIKTED--ELRQFQLSLIDRFGPMPDSVKELIETVR 1033
Query: 556 VRRMAADIGITKIYASGK 573
+R +A ++G K+ G+
Sbjct: 1034 LRWLAEELGFEKLSLKGE 1051
>gi|158321662|ref|YP_001514169.1| transcription-repair coupling factor [Alkaliphilus oremlandii OhILAs]
gi|158141861|gb|ABW20173.1| transcription-repair coupling factor [Alkaliphilus oremlandii OhILAs]
Length = 1174
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/550 (40%), Positives = 353/550 (64%), Gaps = 10/550 (1%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQF 86
P L+KL + W + KTK K AI+ M +L++LY R K K + P + +F F
Sbjct: 564 PPKLNKLG-GSEWAKTKTKVKKAIEDMAGELIKLYAEREKTKGHAFSPDSDWQKQFEELF 622
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
PYE TPDQ + +V++D+ E+E MDRL+CGDVG+GKTEVA+RA F V KQ L
Sbjct: 623 PYEETPDQLRCIEEVKQDM-EKERAMDRLLCGDVGYGKTEVAIRAAFKAVGDSKQVAFLV 681
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA+QH++ +RFS +P I V +LSRF++ +++ ++ I+ G+++I++GTH LL
Sbjct: 682 PTTILAQQHYNTFKQRFSDFP-ITVEMLSRFKNATAQKKIIENIRTGNVDIVIGTHRLLS 740
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
+ Y +LGLL+VDEEQRFGVK KE + K S+DVLTL+ATPIPRTL++++ G RD S+
Sbjct: 741 KDIEYKDLGLLIVDEEQRFGVKHKEALKKLKKSIDVLTLTATPIPRTLHMSMIGIRDMSV 800
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I PP ER P++T++ +S+ V+ AI EL RGGQV+YV R++G+ + + L++ P
Sbjct: 801 IEDPPEERFPVQTYVLGYSESMVVDAISRELARGGQVYYVYNRVQGIHQVANNLKELVPQ 860
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+A+AHGQ R+LE+ M ++ G IL+ T I+E+G+DI N NTII+QD + GL+Q
Sbjct: 861 GRVAVAHGQMSERELEKIMLEYMNGEYDILVSTTIIETGMDISNVNTIIIQDADKLGLSQ 920
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
LYQLRGRVGR+ ++ +AYL Y +LS+ A +RL A++E E G GF++A +D+ IRG
Sbjct: 921 LYQLRGRVGRSYRQGYAYLMYEKDKILSEVAEKRLKAIKEFTEFGSGFKIAMRDLEIRGA 980
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
G + G +Q G + +G DL+ ++L E++ ++ + ++ I++N+N + +YI
Sbjct: 981 GNLLGGEQHGHMAAIGYDLYVKLLEETVGEM--RGEYTEKFEDTTIELNVNAYISEKYIG 1038
Query: 507 HLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
+ + +E+ + A ++D++ + E + ++G P S LL Y++ +A + +
Sbjct: 1039 NPSHKIEIYKKIASIRNKEDMY---RVEEEIEDRFGDIPLSARNLLLISYIKSLAKGLKV 1095
Query: 566 TKIYASGKMV 575
T I K +
Sbjct: 1096 TAITQKDKEI 1105
>gi|323701604|ref|ZP_08113276.1| transcription-repair coupling factor [Desulfotomaculum nigrificans
DSM 574]
gi|323533377|gb|EGB23244.1| transcription-repair coupling factor [Desulfotomaculum nigrificans
DSM 574]
Length = 1169
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 231/546 (42%), Positives = 344/546 (63%), Gaps = 9/546 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E P+ LS+L T W + K K K A++ M +L+ELY R K + P P AEF
Sbjct: 562 EADHPK-LSRLGGTE-WAKAKAKVKEAVRDMAKELLELYAARQTVKGHAFSPDTPWQAEF 619
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
AQFPYE TPDQ +A +V+RD+ E+E PMDRL+CGDVG+GKTEVALRA F V KQ
Sbjct: 620 EAQFPYEETPDQLRAIAEVKRDM-EKERPMDRLLCGDVGYGKTEVALRAAFKAVMDNKQV 678
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
VL PT +LA+QH++ ERF+ YP I++ +LSRF++ E+ + L + G +++++GTH
Sbjct: 679 AVLVPTTILAQQHYNTFRERFANYP-IRIEMLSRFRTPKEQRQVLAGLATGEVDVVIGTH 737
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
L+ V++ +LGLLVVDEEQRFGV KE++ + +VDVLTL+ATPIPRTL+++L G R
Sbjct: 738 RLVQDDVIFKDLGLLVVDEEQRFGVAHKERLKQMRKNVDVLTLTATPIPRTLHMSLVGVR 797
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S++ TPP ER P++T++ + AI+ EL+RGGQV++V R+ L+ +LQ
Sbjct: 798 DTSVLETPPEERFPVQTYVLEEDPTLIREAIRRELNRGGQVYFVHNRVMDLDRLAGWLQD 857
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P IA+AHGQ +LE+ M +F GA +L+CT IVE+GLDI N NT+IV+D F
Sbjct: 858 LVPEARIAVAHGQMKEDELEQIMLEFMDGAYDVLVCTTIVETGLDISNVNTLIVKDADHF 917
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY + +L++ + RL+A+ E E G GF++A +D+
Sbjct: 918 GLSQLYQLRGRVGRTNRLAYAYFLFRRDKVLTEVSERRLSAIREFTEFGSGFKIAMRDLE 977
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G I G +Q G + VG DL+ +L E++ + V P + +++ + +P
Sbjct: 978 IRGAGNILGAEQHGHIAEVGFDLYCRLLEEAVHEARGEKV-EQPVDTA-VELPVEAYIPD 1035
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
+Y+ +E+ A +++ + E L ++G P S++ LLK ++ + +
Sbjct: 1036 QYVPDGNQKVELYRRL--AGMRELSEIADMEEELVDRFGDLPESVQNLLKVTALKILGSQ 1093
Query: 563 IGITKI 568
+ I I
Sbjct: 1094 LKIKSI 1099
>gi|421770635|ref|ZP_16207326.1| Transcription-repair coupling factor [Lactobacillus rhamnosus
LRHMDP2]
gi|421772807|ref|ZP_16209460.1| Transcription-repair coupling factor [Lactobacillus rhamnosus
LRHMDP3]
gi|411181741|gb|EKS48904.1| Transcription-repair coupling factor [Lactobacillus rhamnosus
LRHMDP2]
gi|411183221|gb|EKS50361.1| Transcription-repair coupling factor [Lactobacillus rhamnosus
LRHMDP3]
Length = 1175
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/524 (41%), Positives = 335/524 (63%), Gaps = 7/524 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
T W++ K K I+ + +L++LY R +K + P + +F +FPY TPDQ +
Sbjct: 566 TEWQKTKRKVAARIEDIADELIDLYAKREAEKGYAFGPDDDLQQKFEDEFPYPETPDQLR 625
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
+ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F V GKQ +L PT +LA+QHF
Sbjct: 626 SAKEIKRDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPTTILAQQHF 684
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
D + +RF+ +P +K+GLLSRFQ+ + + + +K+G ++I+VGTH LL V + +LGL
Sbjct: 685 DTMKDRFADFP-VKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDVAFRDLGL 743
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R P
Sbjct: 744 LVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYP 803
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+T + + + AI+ E++RGGQVFY+ R++ +E + L++ P I AHGQ
Sbjct: 804 IQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASIGYAHGQM 863
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR
Sbjct: 864 TETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGR 923
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ + A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G
Sbjct: 924 SSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHG 983
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +VG DL+ +ML E+++K + +V +ID+ + LP++Y+ +E+
Sbjct: 984 FIDSVGYDLYTQMLQEAVNK--RRGLKTVQKTDAEIDLGLEAYLPTDYVADSRQKIELYK 1041
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
+A + + +E L ++G P + LL +++R A
Sbjct: 1042 RIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFA 1083
>gi|418632986|ref|ZP_13195404.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU129]
gi|374840049|gb|EHS03553.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU129]
Length = 1166
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 548 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 605
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ E+ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 606 QSAFEHDFPYELTPDQSKSIDEIKGDM-EKARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 664
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + ++ G+++I+
Sbjct: 665 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLESGYVDIV 723
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 724 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 783
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 784 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 843
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 844 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 903
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 904 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 963
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 964 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1023
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1024 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1081
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1082 HALHAGVELIKDKGKSI 1098
>gi|342214470|ref|ZP_08707162.1| transcription-repair coupling factor [Veillonella sp. oral taxon 780
str. F0422]
gi|341592730|gb|EGS35591.1| transcription-repair coupling factor [Veillonella sp. oral taxon 780
str. F0422]
Length = 1093
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/532 (41%), Positives = 342/532 (64%), Gaps = 9/532 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAF 98
W + K+K + +I + L+ELY R L + P P EF QFPYE T DQ +A
Sbjct: 497 WIKTKSKAQKSIDNLADTLVELYAKRELIEGYAFLPDQPWQREFEDQFPYEETDDQLQAI 556
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ + E PMDRL+CGDVGFGKTEVA+RA+F V +GKQ +L PT VL++QHF
Sbjct: 557 QEIKASM-ELPRPMDRLLCGDVGFGKTEVAMRAMFKAVMSGKQVAMLVPTTVLSEQHFKT 615
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
RFS++ ++V +L+RF+S EK++ + ++ G ++I++GTH+LL ++ + LGLLV
Sbjct: 616 FMYRFSQF-GVRVEVLNRFRSAKEKKDIIKAVQDGQVDILIGTHALLSKKIQFQKLGLLV 674
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
VDEEQRFGV QKEK + ++D+LTLSATPIPRTL+++L G R+ S+I TPP ERLP++
Sbjct: 675 VDEEQRFGVAQKEKWKQWATNIDILTLSATPIPRTLHMSLVGVREMSVIHTPPMERLPVQ 734
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ F + V AI+ EL RGGQV++V +++ + + LQ+A P + IA+AHGQ
Sbjct: 735 TYVVEFDMQVVTEAIRRELQRGGQVYFVYNKVQSIAHMEEQLQRAMPDLRIAVAHGQMAG 794
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+E M+ F +G +L+CT+I+E+GLDI NANTII+ D GL+QLYQ+RGRVGR+
Sbjct: 795 TMMEHVMQDFTEGQYDVLLCTSIIETGLDIPNANTIIIYDADHLGLSQLYQMRGRVGRSS 854
Query: 399 KEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 457
+ A+AY Y PDK +L++ A +RL A++E ELG GF+LA +DM IRG G + G QQ G+
Sbjct: 855 QRAYAYFMYRPDK-VLNESAEKRLKAIQEFTELGAGFKLAMRDMEIRGAGNLLGAQQHGN 913
Query: 458 VGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE 517
+ VG ++ ML E+++K + + P + +D+ I+ + S+YI+ + ++
Sbjct: 914 IAAVGFAMYAAMLEEAIAKAQKKDMPDRPLLAPVVDVGIDAFIDSDYIH---DEARKISV 970
Query: 518 AEKAAEQDIWC-LMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
++ + D L F + L ++G +E L+K ++ A +G+ +
Sbjct: 971 YQRLLQIDTKAGLDDFVDELIDRFGSPTKPVERLIKLAMIKERARALGMKSV 1022
>gi|375148838|ref|YP_005011279.1| transcription-repair coupling factor [Niastella koreensis GR20-10]
gi|361062884|gb|AEW01876.1| transcription-repair coupling factor [Niastella koreensis GR20-10]
Length = 1146
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 241/581 (41%), Positives = 345/581 (59%), Gaps = 24/581 (4%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQK 95
+ AW R K K K ++++ DL+ LY R Q+ + P N E A F YE TPDQ
Sbjct: 529 SDAWNRLKEKTKTKVKEIAFDLITLYAQRKAQQGFQHAPDNYMQTELEASFIYEDTPDQS 588
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
KA DV++D+ E +PMDRL+CGDVGFGKTE+A+RA F GKQA VL PT +LA QH
Sbjct: 589 KATADVKKDM-ESPSPMDRLVCGDVGFGKTEIAIRAAFKSCCDGKQAAVLVPTTILAFQH 647
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
F SER +P + V ++RF+S EK++ L ++ G ++II+GTH+LLG V Y +LG
Sbjct: 648 FKTFSERLKDFP-VTVDYVNRFKSAKEKKDTLKRLEEGKIDIIIGTHALLGKEVKYKDLG 706
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LLVVDEEQ+FGV KEKI + + +VD LTL+ATPIPRTL +L G RD S+++TPPP R
Sbjct: 707 LLVVDEEQKFGVAHKEKIKTLRTNVDCLTLTATPIPRTLQFSLMGARDLSIMNTPPPNRQ 766
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
PI+T + F+ + + AI YE +RGGQVF++ R++GL E +Q P + I AHGQ
Sbjct: 767 PIQTEVQVFNHDFIRDAIYYETERGGQVFFIHNRVQGLSEMAALIQGLCPDLSIGFAHGQ 826
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
LEE + F +LICTNIVESG+DI N NTII+ + FGL+ L+QLRGRVG
Sbjct: 827 LEGHILEERILDFIDKKYDVLICTNIVESGVDIPNVNTIIINNAHHFGLSDLHQLRGRVG 886
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A YL P S L + +RL LE+ ELG GFQ+A +D+ IRG G + G +Q+
Sbjct: 887 RSNKKAFCYLLAPPMSTLPPDSRKRLQTLEQHSELGSGFQIAMRDLDIRGAGNLLGGEQS 946
Query: 456 GDVGNVGVDLFFEMLFESLSKVDE-------HCVISVPYKSVQ---IDININPRLPSEYI 505
G + +G +++ ++L E++ ++ IS VQ ID ++ +P Y+
Sbjct: 947 GFMAEIGFEMYQKVLEEAIKELKRTQFRELFKAEISKQEDYVQDCTIDTDLEILIPDSYV 1006
Query: 506 NHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
+ + + + ++ L F L+ ++G P +E L + VRR+A ++G
Sbjct: 1007 ESITERLTLYTRLDNCDNEE--ELQAFAVELQDRFGPIPQQVEDLFDTVRVRRLAVELGF 1064
Query: 566 TKIYASGKMVGMKTNMNKKVFKMMIDS--MTSEVHRNSLTF 604
K+ +K + K F DS S++ N LTF
Sbjct: 1065 EKML-------LKDDTLKCYFINKADSPYFESDIFHNILTF 1098
>gi|420191279|ref|ZP_14697211.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM037]
gi|420204996|ref|ZP_14710533.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM015]
gi|420236074|ref|ZP_14740604.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH051475]
gi|394257803|gb|EJE02711.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM037]
gi|394271575|gb|EJE16067.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM015]
gi|394301429|gb|EJE44886.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH051475]
Length = 1169
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ E+ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-EKARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + ++ G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLESGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>gi|421729449|ref|ZP_16168581.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
subsp. plantarum M27]
gi|407076693|gb|EKE49674.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
subsp. plantarum M27]
Length = 1177
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/493 (43%), Positives = 326/493 (66%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + +
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYAFSPDHEMQRQ 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FESAFPYQETEDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ ++ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETITERFQDYP-INIGLLSRFRTRKESNETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVDDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + S +++ +IDI ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFET-EIDIELDAYIP 1032
Query: 502 SEYINHLENPMEM 514
YI + ++M
Sbjct: 1033 ENYIQDGKQKIDM 1045
>gi|336171928|ref|YP_004579066.1| transcription-repair coupling factor [Lacinutrix sp. 5H-3-7-4]
gi|334726500|gb|AEH00638.1| transcription-repair coupling factor [Lacinutrix sp. 5H-3-7-4]
Length = 1120
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 228/571 (39%), Positives = 345/571 (60%), Gaps = 16/571 (2%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQ 85
+P + KL + AW+ K K K ++ + +L++LY R +K Y + + E A
Sbjct: 500 KPPKVYKLG-SKAWKTLKQKTKARVKHIAFNLIKLYAKRKLEKGYQYNTDSYLQHELEAS 558
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ KA D++ D+ E E PMDRLICGDVGFGKTEVA+RA F V GKQ VL
Sbjct: 559 FIYEDTPDQIKATADIKADM-ESERPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAVL 617
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA QH SER ++P + V L+RF++ EK E ++ ++ GH++II+GTH L+
Sbjct: 618 VPTTILAFQHHKTFSERLKEFP-VTVDYLNRFRTAKEKRETIEKLEKGHVDIIIGTHQLV 676
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
+V + +LGLL+VDEEQ+FGV KEK+ + K +VDVLTL+ATPIPRTL +L RD S
Sbjct: 677 NKKVKFKDLGLLIVDEEQKFGVAVKEKLKTLKDNVDVLTLTATPIPRTLQFSLMAARDLS 736
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+TPPP R PI++++ F++E + A+ YE+ RGGQ+F++ RI+ ++E LQ+ P
Sbjct: 737 VITTPPPNRFPIESNVIRFNEETIRDAVSYEIQRGGQIFFIHNRIENIKEVAGMLQRLVP 796
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
I I HGQ ++LEE M F G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 797 DAKIGIGHGQLDGKKLEELMLAFINGDFDVLVSTTIIESGLDVPNANTIFINNANNFGLS 856
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P ++ A +R+ ALE+ LG GF +A KD+ IRG
Sbjct: 857 DLHQMRGRVGRSNKKAFCYFITPGYDAMTPDARKRIQALEQFTALGSGFNIAMKDLEIRG 916
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDE--------HCVISVPY-KSVQIDINI 496
G + G +Q+G + +G D + ++L E++ ++ E + Y K + ID +
Sbjct: 917 AGDLLGGEQSGFINEIGFDTYQKILNEAIEELKETEFKDLYSEDINDKEYVKDITIDTDF 976
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
P +YIN++ + + + ++ L +F L ++G+ P + LL + +
Sbjct: 977 ELLFPDDYINNISERLNLYTQLNNFKTEE--ELEKFEIDLIDRFGELPTQVVDLLNSVRL 1034
Query: 557 RRMAADIGITK-IYASGKMVGMKTNMNKKVF 586
+ +A +G+ K I GK+VG N + F
Sbjct: 1035 KWLATKLGLEKVIMKKGKLVGYFINDQQSSF 1065
>gi|302339041|ref|YP_003804247.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM
11293]
gi|301636226|gb|ADK81653.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM
11293]
Length = 1128
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/493 (43%), Positives = 329/493 (66%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
E + PR L KL WE RK + + +++ + L++LY R + + +P++ E
Sbjct: 522 QEGQSPR-LDKLG-GKGWESRKARVRKSVEDLADRLIKLYAKRKEARGFSFPEDTDWQVE 579
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A+FPY+ T DQ + +V+ D+ E + PMDRLICGDVG+GKTEVA+RA F V AGKQ
Sbjct: 580 FEAEFPYQETADQLRCIEEVKADM-ESDRPMDRLICGDVGYGKTEVAMRAAFKAVVAGKQ 638
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
LAPT +LA+QH++ ERF +YP +K+ ++SRF K ++ + L + G +++++GT
Sbjct: 639 VAFLAPTTILAEQHYENFCERFKRYP-VKIDMVSRFVPKKKQHQILSALTEGSVDLLIGT 697
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L V++ NLGL+V+DEEQRFGVK KE++ + SVD L+LSATPIPRTL+++L
Sbjct: 698 HRILQKDVLFKNLGLIVIDEEQRFGVKDKERLKELRTSVDSLSLSATPIPRTLHMSLLKI 757
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD SL++T P R PI+T + F +E V AI+ E+DRGGQVF++ R++ L + FL+
Sbjct: 758 RDISLLTTAPNNRRPIETTIQEFDEELVAKAIRREMDRGGQVFFLHNRVETLPQVRRFLE 817
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P V + IAHGQ S QLE+ M +F G+ ++L+ T I+E+G+DI N NTII+
Sbjct: 818 RLIPEVFVEIAHGQMSSSQLEDIMHRFIHGSFQVLLATTIIENGIDIPNVNTIIIDRADM 877
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
+G++QLYQLRGRVGR+D+ ++AYLFYP++ LS+ A++RL + + ELG GF++A KDM
Sbjct: 878 YGISQLYQLRGRVGRSDRSSYAYLFYPEQRSLSEIAMKRLQIISDYTELGSGFKIAMKDM 937
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
+RG G + G QQ G++ +VG D++ +L E+++++ +P + V ++++ + +P
Sbjct: 938 EVRGAGNLLGRQQHGEILSVGFDMYLRILDEAVAEMSRGDGEEIPVE-VYLELDYSGYIP 996
Query: 502 SEYINHLENPMEM 514
YI ME+
Sbjct: 997 DSYITDPTEKMEV 1009
>gi|335040915|ref|ZP_08534035.1| transcription-repair coupling factor [Caldalkalibacillus thermarum
TA2.A1]
gi|334179219|gb|EGL81864.1| transcription-repair coupling factor [Caldalkalibacillus thermarum
TA2.A1]
Length = 1192
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 222/535 (41%), Positives = 341/535 (63%), Gaps = 14/535 (2%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA---EFAAQFPYEPTPDQKK 96
W+R K++ + ++Q + L++LY R + P Y +P EF A FPYE TPDQK+
Sbjct: 573 WKRVKSRVRSSVQDIAEHLLKLYAKR--EATPGYAFSPDTEIHREFDALFPYEETPDQKR 630
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A +++RD+ E+ PMDRL+CGDVG+GKTEVA+RA F V KQ VL PT +LA+QH+
Sbjct: 631 AIEEIKRDM-EKPRPMDRLLCGDVGYGKTEVAIRAAFKAVMDSKQVAVLVPTTILAQQHY 689
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF +P +++ +LSRF+++ E+ E + IK+G ++II+GTH LL V + +LGL
Sbjct: 690 ETFKERFRDFP-VEIDVLSRFRTRKEQNETVKKIKNGVVDIIIGTHRLLSKDVQFKDLGL 748
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L+VDEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P
Sbjct: 749 LIVDEEQRFGVAHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFP 808
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T++ + V AI+ EL RGGQV++V +++G+E + ++ P +A+AHGQ
Sbjct: 809 VQTYVVEYQGALVREAIERELARGGQVYFVYNQVQGIERKAEEIRALVPDARVAVAHGQM 868
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE M F G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR
Sbjct: 869 KETELEAIMLDFLDGEYDVLVSTTIIETGVDIPNVNTLIVYDADKMGLSQLYQLRGRVGR 928
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+++ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G
Sbjct: 929 SNRTAYAYFTYQRGKVLSEVAEKRLEAIKEFTELGSGFKIAMRDLAIRGAGNLLGAEQHG 988
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +VG DL+ +ML E++ ++ P + +++D++I+ +P +Y+ + +EM
Sbjct: 989 FINSVGFDLYSQMLKEAIEELKGERPQEEPVE-LEMDVHIDAYIPEDYVQDSKQKIEMYK 1047
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK----KLYVRRMAADIGITK 567
+ AA + + + E ++G P + L+K K Y +R D + K
Sbjct: 1048 KV--AAVSTLEDVRKVEEEFMDRFGAPPPPVGRLIKLSKLKAYAKRYKLDTIVLK 1100
>gi|375360746|ref|YP_005128785.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
gi|371566740|emb|CCF03590.1| transcription-repair coupling factor (superfamily II helicase)
[Bacillus amyloliquefaciens subsp. plantarum CAU B946]
Length = 1177
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/493 (43%), Positives = 326/493 (66%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + +
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYAFSPDHEMQRQ 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FESAFPYQETEDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ ++ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETITERFQDYP-INIGLLSRFRTRKESNETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVDDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + S +++ +IDI ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFET-EIDIELDAYIP 1032
Query: 502 SEYINHLENPMEM 514
YI + ++M
Sbjct: 1033 ENYIQDGKQKIDM 1045
>gi|451348555|ref|YP_007447186.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
IT-45]
gi|449852313|gb|AGF29305.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
IT-45]
Length = 1177
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/493 (43%), Positives = 326/493 (66%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + +
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYAFSPDHEMQRQ 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FESAFPYQETEDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ ++ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETITERFQDYP-INIGLLSRFRTRKESNETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVDDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + S +++ +IDI ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFET-EIDIELDAYIP 1032
Query: 502 SEYINHLENPMEM 514
YI + ++M
Sbjct: 1033 ENYIQDGKQKIDM 1045
>gi|315223854|ref|ZP_07865702.1| transcription-repair coupling factor [Capnocytophaga ochracea F0287]
gi|420160030|ref|ZP_14666820.1| transcription-repair coupling factor [Capnocytophaga ochracea str.
Holt 25]
gi|314946184|gb|EFS98185.1| transcription-repair coupling factor [Capnocytophaga ochracea F0287]
gi|394761170|gb|EJF43596.1| transcription-repair coupling factor [Capnocytophaga ochracea str.
Holt 25]
Length = 1109
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/561 (39%), Positives = 344/561 (61%), Gaps = 16/561 (2%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQ 85
+P + KL + AW+ K K K ++++ +L++LY R + K Y + + E A
Sbjct: 489 KPPKIYKLG-SGAWKALKQKTKTRVKEIAFNLIQLYAKRKESKGYAYSHDSYMQNELEAS 547
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V GKQ VL
Sbjct: 548 FLYEDTPDQSKATAEVKADM-ESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVL 606
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT VLA QHF S+R +P +++ L+RF++ EK+ L+ + +G L+II+GTH ++
Sbjct: 607 VPTTVLAFQHFQTFSQRMKDFP-VRIDYLNRFRTAKEKKIILEELANGQLDIIIGTHQIV 665
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L RD S
Sbjct: 666 GEKVAYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLS 725
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+TPPP R PI + + FS+E + I+YE+ RGGQVF++ R++ ++E +Q+ P
Sbjct: 726 VINTPPPNRYPIDSQVVPFSEEIIRDGIRYEIQRGGQVFFMHNRVENIQEVAGMIQRLLP 785
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
IAI HGQ ++LEETM F GA +L+ T I+E+GLD+ NANTI + + FGL+
Sbjct: 786 DARIAIGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNAHNFGLS 845
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A + P +SD A +R+ A+ + +LG G +A KD+ IRG
Sbjct: 846 DLHQMRGRVGRSNKKAFCFFITPPLVAMSDDARKRIEAIAQFSDLGSGLNIAMKDLEIRG 905
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---------VQIDINI 496
G + G +Q+G + +G + + ++L E++ ++ E+ + + + QID +
Sbjct: 906 AGDLLGGEQSGFINELGFETYQKILQEAIVELKENEFSELYHTAEEDKTYLTDTQIDTDF 965
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
P Y+N + + + NE ++ L Q+ +L ++GK P LL + V
Sbjct: 966 ELLFPDTYVNRVAERLNLYNELSNLPNEE--ALQQYQRNLIDRFGKLPPQAIDLLNSVRV 1023
Query: 557 RRMAADIGITK-IYASGKMVG 576
+ +A +GI K + +GKM G
Sbjct: 1024 KWIATRMGIEKLVMKNGKMTG 1044
>gi|418934828|ref|ZP_13488648.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC128]
gi|377769825|gb|EHT93592.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC128]
Length = 1168
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/559 (39%), Positives = 355/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLISRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AYL +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYLLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|354585795|ref|ZP_09004626.1| transcription-repair coupling factor [Paenibacillus lactis 154]
gi|353184120|gb|EHB49648.1| transcription-repair coupling factor [Paenibacillus lactis 154]
Length = 1175
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 229/560 (40%), Positives = 342/560 (61%), Gaps = 15/560 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAI 79
+E K P+ + KL W R K K + ++Q + DL++LY R Q P Y P
Sbjct: 547 SEDKEPK-IYKLG-GNEWTRVKNKVRSSVQDIADDLIKLYAER--QSAPGYGFDKDTPEQ 602
Query: 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 139
EF FPY+ TPDQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F G
Sbjct: 603 QEFEDMFPYDETPDQLRAIAEIKKDM-EQNRPMDRLLCGDVGYGKTEVAVRAAFKAAIEG 661
Query: 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 199
KQ VL PT +LA+QH++ ERF+ YP I + +LSRF+S+ E+ E + +K G ++I++
Sbjct: 662 KQVAVLVPTTILAQQHYETFRERFANYP-INIQVLSRFRSRKEQNETIKKVKQGAVDILI 720
Query: 200 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 259
GTH LL +V+ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++
Sbjct: 721 GTHRLLSQDIVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML 780
Query: 260 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 319
G RD S+I TPP R P++T++ S+ V AI+ EL RGGQV+Y+ R++G+ E
Sbjct: 781 GVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIERELARGGQVYYLYNRVQGIHEMAAQ 840
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
+ P + + HGQ +LE+T+ F G +L+ T+I+E+G+DI N NT+IV D
Sbjct: 841 ISMLVPEARVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA 900
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 439
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E ELG GF++A +
Sbjct: 901 DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR 960
Query: 440 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK--SVQIDIN 495
D+ IRG G + G +Q G + +VG DL+ +ML E + KV + P K + ID+
Sbjct: 961 DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKVSMLGETAAPTKDWNTSIDLG 1020
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
I+ LPS+YI +E+ + D + + L ++G+ P ++ LL
Sbjct: 1021 IDAYLPSDYIYDSIQKIEIYKKVASVTTIDESA--ELEDELLDRFGELPQAVNNLLAVSR 1078
Query: 556 VRRMAADIGITKIYASGKMV 575
++ GI I G V
Sbjct: 1079 LKVYGRTYGIDSITQRGDDV 1098
>gi|374375903|ref|ZP_09633561.1| transcription-repair coupling factor [Niabella soli DSM 19437]
gi|373232743|gb|EHP52538.1| transcription-repair coupling factor [Niabella soli DSM 19437]
Length = 1128
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/543 (40%), Positives = 333/543 (61%), Gaps = 15/543 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQK 95
+ AW R K K K ++++ DL++LY R QK + P N E A F YE TPDQ
Sbjct: 514 SDAWTRLKEKTKTRVKEIAFDLIKLYAQRKAQKGFAHTPDNYLQTELEASFIYEDTPDQS 573
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
KA DV++D+ E E+PMDRL+CGDVGFGKTEVA+RA F GKQA +L PT +LA QH
Sbjct: 574 KASADVKKDM-ESESPMDRLVCGDVGFGKTEVAIRAAFKTCVDGKQAAILVPTTILAFQH 632
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
+ +R ++P + V ++RF+S EK+E L + G ++I+VGTH +LG V + +LG
Sbjct: 633 YKTFKDRLREFP-VTVDFINRFKSSKEKKETLQKLAEGKIDILVGTHGILGKEVKFKDLG 691
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
+LV+DEEQ+FGV KEKI + ++D LTL+ATPIPRTL +L G RD S+I+TPPP R
Sbjct: 692 ILVIDEEQKFGVAHKEKIKVLRSTIDCLTLTATPIPRTLQFSLMGARDLSIINTPPPNRQ 751
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
PI+T + ++++ + AI +E +RGGQVF++ R+ GL E +Q P + I AHGQ
Sbjct: 752 PIQTEVQVYNEDVIRDAIYFETERGGQVFFIHNRVAGLAEMATMIQGLCPDLSIGFAHGQ 811
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
QLEE + F +L+CTNIVESG+DI N NTII+ + FGL+ L+QLRGRVG
Sbjct: 812 MEGHQLEEKILDFIDHRYDVLVCTNIVESGVDIPNVNTIIINNAHHFGLSDLHQLRGRVG 871
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A YL P S L + +RL LE+ ELG GFQ+A +D+ IRG G + G +Q+
Sbjct: 872 RSNKKAFCYLLAPPMSTLPADSRKRLQTLEQHSELGSGFQIAMRDLDIRGAGNLLGGEQS 931
Query: 456 GDVGNVGVDLFFEMLFESLSKV----------DEHCVISVPYKSVQIDININPRLPSEYI 505
G + +G + + ++L E++ ++ DE ID ++ +P +Y+
Sbjct: 932 GFMAEIGFETYQKILDEAIRELKRTQFKELFKDEISKQDDFVSDCTIDTDLEILIPDDYV 991
Query: 506 NHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
+ + + + + ++ ++ +TE L+ ++G P ++ L + + R++A ++G
Sbjct: 992 ESITERLSLYQRLDDSESEEALSVL-YTE-LQDRFGPVPPPVDDLFETIKCRKLAVELGF 1049
Query: 566 TKI 568
K+
Sbjct: 1050 EKM 1052
>gi|258540716|ref|YP_003175215.1| transcription-repair coupling factor [Lactobacillus rhamnosus Lc 705]
gi|385836345|ref|YP_005874120.1| transcription-repair coupling factor [Lactobacillus rhamnosus ATCC
8530]
gi|257152392|emb|CAR91364.1| Transcription-repair coupling factor [Lactobacillus rhamnosus Lc 705]
gi|355395837|gb|AER65267.1| transcription-repair coupling factor [Lactobacillus rhamnosus ATCC
8530]
Length = 1175
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/524 (41%), Positives = 335/524 (63%), Gaps = 7/524 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
T W++ K K I+ + +L++LY R +K + P + +F +FPY TPDQ +
Sbjct: 566 TEWQKTKRKVAARIEDIADELIDLYAKREAEKGYAFGPDDDLQQKFEDEFPYPETPDQLR 625
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
+ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F V GKQ +L PT +LA+QHF
Sbjct: 626 SAKEIKRDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPTTILAQQHF 684
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
D + +RF+ +P +K+GLLSRFQ+ + + + +K+G ++I+VGTH LL V + +LGL
Sbjct: 685 DTMKDRFADFP-VKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDVAFRDLGL 743
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R P
Sbjct: 744 LVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYP 803
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+T + + + AI+ E++RGGQVFY+ R++ +E + L++ P I AHGQ
Sbjct: 804 IQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASIGYAHGQM 863
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR
Sbjct: 864 TETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGR 923
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ + A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G
Sbjct: 924 SSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHG 983
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +VG DL+ +ML E+++K + +V +ID+ + LP++Y+ +E+
Sbjct: 984 FIDSVGYDLYTQMLQEAVNK--RRGLKTVQKTDAEIDLGLEAYLPTDYVADSRQKIELYK 1041
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
+A + + +E L ++G P + LL +++R A
Sbjct: 1042 RIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFA 1083
>gi|423078394|ref|ZP_17067077.1| transcription-repair coupling factor [Lactobacillus rhamnosus ATCC
21052]
gi|357551251|gb|EHJ33045.1| transcription-repair coupling factor [Lactobacillus rhamnosus ATCC
21052]
Length = 1182
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/524 (41%), Positives = 335/524 (63%), Gaps = 7/524 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
T W++ K K I+ + +L++LY R +K + P + +F +FPY TPDQ +
Sbjct: 573 TEWQKTKRKVAARIEDIADELIDLYAKREAEKGYAFGPDDDLQQKFEDEFPYPETPDQLR 632
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
+ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F V GKQ +L PT +LA+QHF
Sbjct: 633 SAKEIKRDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPTTILAQQHF 691
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
D + +RF+ +P +K+GLLSRFQ+ + + + +K+G ++I+VGTH LL V + +LGL
Sbjct: 692 DTMKDRFADFP-VKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDVAFRDLGL 750
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R P
Sbjct: 751 LVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYP 810
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+T + + + AI+ E++RGGQVFY+ R++ +E + L++ P I AHGQ
Sbjct: 811 IQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASIGYAHGQM 870
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR
Sbjct: 871 TETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGR 930
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ + A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G
Sbjct: 931 SSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHG 990
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +VG DL+ +ML E+++K + +V +ID+ + LP++Y+ +E+
Sbjct: 991 FIDSVGYDLYTQMLQEAVNK--RRGLKTVQKTDAEIDLGLEAYLPTDYVADSRQKIELYK 1048
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
+A + + +E L ++G P + LL +++R A
Sbjct: 1049 RIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFA 1090
>gi|332297986|ref|YP_004439908.1| transcription-repair coupling factor [Treponema brennaborense DSM
12168]
gi|332181089|gb|AEE16777.1| transcription-repair coupling factor [Treponema brennaborense DSM
12168]
Length = 1185
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 222/558 (39%), Positives = 351/558 (62%), Gaps = 11/558 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
NE PR L +L + +WE RK K K +++ + L++LY R + P+PK+
Sbjct: 579 NEGCAPR-LDRLG-SKSWENRKNKVKKSVEDIAQKLIDLYSRRKAARGFPFPKDTEWQTA 636
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ +V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F V GKQ
Sbjct: 637 FEAAFPYDETDDQLTVTAEVKADM-EKPVPMDRLICGDVGYGKTEVAMRAAFKAVMGGKQ 695
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
LAPT +LA+QH++ +ERF +P +++ +SRF SKAE++ L+ +K G ++I+VGT
Sbjct: 696 VAFLAPTTILAEQHYETCTERFENFP-VRIAHMSRFVSKAEQKNILEKLKTGGVDILVGT 754
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H ++ V++ LGL+++DEEQRFGVK KE++ K ++D L +SATPIPRTL+++L
Sbjct: 755 HRIIQKDVIFKELGLMIIDEEQRFGVKDKERLKELKTNIDSLAMSATPIPRTLHMSLLKI 814
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD SL++TPP R PI+T + +++ ++V +AI+ E +RGGQVFY+ R++ LEE L+
Sbjct: 815 RDMSLLTTPPQNRQPIETVIDSYNDDRVATAIRREAERGGQVFYLHNRVETLEETRIKLE 874
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
Q P + + AHGQ + +L++ +F G +L+ T I+E+G+DI N NTII+
Sbjct: 875 QLVPEMLVDTAHGQMSAGELDDIFRRFKMGGFHVLVATTIIENGIDIPNVNTIIIDRADM 934
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
+G++QLYQLRGRVGR+D++A+AYL YP+ LS+ A++RL + + ELG GF++A KDM
Sbjct: 935 YGVSQLYQLRGRVGRSDRKAYAYLLYPENKALSEIAMKRLQVISDFTELGSGFKIAMKDM 994
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV-DEHCVISVPYKSVQIDININPRL 500
IRG G + G+ Q+G++ +VG DL+ +L E++ ++ ++H V +++ +
Sbjct: 995 EIRGAGNLLGKDQSGEMYSVGFDLYLRLLEEAVQRLTNDHYEAE---NEVLLELEYTGFI 1051
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI + + ME+ + A +D L + L+ ++G P + LL +R +
Sbjct: 1052 PDSYITNPQTKMEIYKKISGIANRD--ELERMYGELQDRFGPIPDEVSSLLSLAEIRIIC 1109
Query: 561 ADIGITKIYASGKMVGMK 578
+ I + G V ++
Sbjct: 1110 KKLHIATLRERGGKVNIE 1127
>gi|289551698|ref|YP_003472602.1| transcription-repair coupling factor [Staphylococcus lugdunensis
HKU09-01]
gi|289181229|gb|ADC88474.1| Transcription-repair coupling factor [Staphylococcus lugdunensis
HKU09-01]
Length = 1173
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 353/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E K P+ L+KL + W++ K K + +++ + +L+ LY R + ++ A
Sbjct: 551 YVASEDKSPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIALYKEREMSVGYQFGEDTAE 608
Query: 80 AE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ E + PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QQAFELDFPYELTPDQAKSIEEIKADM-ELQKPMDRLLCGDVGYGKTEVAIRAAFKAVME 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E + + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLVSRFRTAKEVRKTKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLSKDIRYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA+AHGQ R LEETM F G IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPEASIAVAHGQMTERDLEETMLSFINGDYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLTETAEDRLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ + V++ +N++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGITEETPDTPEVEMVLNLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K + L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQNEQAKIEIYKKLRKVENE--AQLDHIRDELMDRFNDYPIEVERLLDSVQIKM 1084
Query: 559 MAADIGITKIYASGKMVGM 577
A G+T I GK V +
Sbjct: 1085 HALRAGVTLIKDQGKTVDI 1103
>gi|418071051|ref|ZP_12708325.1| transcription-repair coupling factor [Lactobacillus rhamnosus R0011]
gi|357538545|gb|EHJ22565.1| transcription-repair coupling factor [Lactobacillus rhamnosus R0011]
Length = 1175
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/524 (41%), Positives = 335/524 (63%), Gaps = 7/524 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
T W++ K K I+ + +L++LY R +K + P + +F +FPY TPDQ +
Sbjct: 566 TEWQKTKRKVAARIEDIADELIDLYAKREAEKGYAFGPDDDLQQKFEDEFPYPETPDQLR 625
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
+ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F V GKQ +L PT +LA+QHF
Sbjct: 626 SAKEIKRDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPTTILAQQHF 684
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
D + +RF+ +P +K+GLLSRFQ+ + + + +K+G ++I+VGTH LL V + +LGL
Sbjct: 685 DTMKDRFADFP-VKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDVAFRDLGL 743
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R P
Sbjct: 744 LVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYP 803
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+T + + + AI+ E++RGGQVFY+ R++ +E + L++ P I AHGQ
Sbjct: 804 IQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASIGYAHGQM 863
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR
Sbjct: 864 TETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGR 923
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ + A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G
Sbjct: 924 SSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHG 983
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +VG DL+ +ML E+++K + +V +ID+ + LP++Y+ +E+
Sbjct: 984 FIDSVGYDLYTQMLQEAVNK--RRGLKTVQKTDAEIDLGLEAYLPTDYVADSRQKIELYK 1041
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
+A + + +E L ++G P + LL +++R A
Sbjct: 1042 RIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFA 1083
>gi|381180829|ref|ZP_09889666.1| transcription-repair coupling factor [Treponema saccharophilum DSM
2985]
gi|380767185|gb|EIC01187.1| transcription-repair coupling factor [Treponema saccharophilum DSM
2985]
Length = 1188
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/538 (40%), Positives = 341/538 (63%), Gaps = 7/538 (1%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQKKA 97
+WE RK K K A+++M L+ LY R + + + P + AEF A FPYE TPDQ
Sbjct: 597 SWENRKGKVKKAVEEMAEKLVTLYGKRKVSRGFAFARWPDLEAEFDAAFPYEDTPDQCSV 656
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157
+++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V + KQ LAPT +LA+QHF+
Sbjct: 657 TREIKDDM-ERPVPMDRLLCGDVGYGKTEVAMRAAFKAVLSKKQVAFLAPTTILAEQHFE 715
Query: 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217
ERF+ +P + + LSRF + E++E L + G ++IIVGTH LL VV+ +LGL+
Sbjct: 716 TCVERFANFP-VVIKQLSRFVAPKERKETLAALAAGQVDIIVGTHRLLQKDVVFRDLGLM 774
Query: 218 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 277
++DEEQRFGVK KE++ + + ++D L++SATPIPRTL+++L RD SL++TPP R PI
Sbjct: 775 IIDEEQRFGVKDKERLKTMRTNIDCLSMSATPIPRTLHMSLLKIRDMSLLTTPPQTRKPI 834
Query: 278 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 337
+T + A+ EKV AI+ E++RGGQVF++ R++ L+E +++ P V + AHGQ
Sbjct: 835 ETFVDAYDDEKVARAIRNEVERGGQVFFLHNRVETLQETCRTIERLVPEVLVDFAHGQMS 894
Query: 338 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 397
+ +L++ +F G +L+ T I+E+G+DI N NTII+ +G++QLYQLRGRVGR+
Sbjct: 895 AEELDDIFRRFKMGGFHVLVATTIIENGIDIPNVNTIIIDRADMYGISQLYQLRGRVGRS 954
Query: 398 DKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 457
D++A AYL YP +LS+ A++RL A+ + ELG GF++A KDM IRG G + G Q+GD
Sbjct: 955 DRKAFAYLLYPGNKVLSEVAMKRLQAISDFTELGSGFKIAMKDMEIRGAGNLLGRDQSGD 1014
Query: 458 VGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE 517
V +VG D++ +L ++++++ + + V I++ + +P Y++ ++ ME+ +
Sbjct: 1015 VYSVGFDMYVRLLTDAINRLTKEGYKE--ERDVLIELEYSGFIPDTYVHSVQTKMEIYKK 1072
Query: 518 AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 575
AA Q L + ++G P + L+ VR +A + + + G V
Sbjct: 1073 V--AAVQTKEELAGLCLEIEDRFGPIPDEVYSLMSLAEVRIIARRLSVDSLKEKGGTV 1128
>gi|385785245|ref|YP_005761418.1| putative transcription-repair coupling factor [Staphylococcus
lugdunensis N920143]
gi|418416036|ref|ZP_12989238.1| transcription-repair-coupling factor [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|339895501|emb|CCB54830.1| putative transcription-repair coupling factor [Staphylococcus
lugdunensis N920143]
gi|410872946|gb|EKS20883.1| transcription-repair-coupling factor [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 1173
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 353/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E K P+ L+KL + W++ K K + +++ + +L+ LY R + ++ A
Sbjct: 551 YVASEDKSPK-LNKLG-GSEWKKTKAKVQQSVEDIAEELIALYKEREMSVGYQFGEDTAE 608
Query: 80 AE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ E + PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QQAFELDFPYELTPDQAKSIEEIKADM-ELQKPMDRLLCGDVGYGKTEVAIRAAFKAVME 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E + + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLVSRFRTAKEVRKTKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLSKDIRYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA+AHGQ R LEETM F G IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPEASIAVAHGQMTERDLEETMLSFINGDYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLTETAEDRLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ + V++ +N++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGITEETPDTPEVEMVLNLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K + L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQNEQAKIEIYKKLRKVENE--AQLDHIRDELMDRFNDYPIEVERLLDSVQIKM 1084
Query: 559 MAADIGITKIYASGKMVGM 577
A G+T I GK V +
Sbjct: 1085 HALRAGVTLIKDQGKTVDI 1103
>gi|414154401|ref|ZP_11410720.1| Transcription-repair-coupling factor [Desulfotomaculum hydrothermale
Lam5 = DSM 18033]
gi|411454192|emb|CCO08624.1| Transcription-repair-coupling factor [Desulfotomaculum hydrothermale
Lam5 = DSM 18033]
Length = 1168
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/529 (42%), Positives = 332/529 (62%), Gaps = 9/529 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E P+ LS+L + W + K + K A++ M +L+ELY R + + P P AEF
Sbjct: 561 EADHPK-LSRLGGSE-WAKAKARVKEAVRDMARELLELYAARQTVQGYAFSPDTPWQAEF 618
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
AQFPYE TPDQ +A +V+RD+ E+ PMDRL+CGDVG+GKTEVALRA F V KQ
Sbjct: 619 EAQFPYEETPDQLRAIQEVKRDM-EKPRPMDRLLCGDVGYGKTEVALRAAFKAVMDNKQV 677
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
VL PT +LA+QH++ ERF+ YP +++ +LSRF++ E+ + L + G ++I++GTH
Sbjct: 678 AVLVPTTILAQQHYNTFRERFANYP-VRIEMLSRFRTPKEQRQVLAGLATGEVDIVIGTH 736
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
L+ + + +LGLLVVDEEQRFGV KEK+ + +VDVLTL+ATPIPRTL+++L G R
Sbjct: 737 RLVQDDIYFKDLGLLVVDEEQRFGVMHKEKLKQLRQNVDVLTLTATPIPRTLHMSLVGVR 796
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S++ TPP ER P++T++ + AI+ EL+RGGQV++V R+ L+ +LQ
Sbjct: 797 DTSVLETPPEERFPVQTYVLEEDPVLIREAIRRELNRGGQVYFVHNRVVDLDRLAGWLQG 856
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P + +AHGQ +LE+ M +F GA +L+CT IVE+GLDI N NT+IV+D F
Sbjct: 857 LVPEARLGVAHGQMKEDELEQIMLEFMDGAYDVLVCTTIVETGLDIANVNTLIVKDADHF 916
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GLAQLYQLRGRVGR ++ A+AY + +L++ + RL+A+ E E G G+++A +D+
Sbjct: 917 GLAQLYQLRGRVGRTNRLAYAYFLFRRDKVLTEVSERRLSAIREFTEFGSGYKIAMRDLE 976
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G I G QQ G + VG +++ +L E++ + H V +V++ + +P
Sbjct: 977 IRGAGNILGAQQHGHIAEVGFEMYCRLLEEAIQEARGHKTEQVVDTAVELPVEAY--IPD 1034
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
Y+ +E+ AA Q++ L + L +YG P S+ LL
Sbjct: 1035 TYVPDGNQKVELYRRL--AAMQEVSELADLEDELVDRYGDLPDSVRCLL 1081
>gi|20808914|ref|NP_624085.1| transcription-repair coupling factor [Thermoanaerobacter
tengcongensis MB4]
gi|20517574|gb|AAM25689.1| Transcription-repair coupling factor - superfamily II helicase
[Thermoanaerobacter tengcongensis MB4]
Length = 1169
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 238/584 (40%), Positives = 359/584 (61%), Gaps = 15/584 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFA 83
T P L+KL W R K K K A + + DL+ELY R K + P P EF
Sbjct: 560 TDNPPKLNKLG-GGEWIRAKRKAKKAAEDLAKDLIELYAKRQMAKGHAFSPDTPWQKEFE 618
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
QFPYE T DQ + +++ D+ E++ PMDRL+CGDVG+GKTEVALRA F V+ GKQ
Sbjct: 619 DQFPYEETEDQLRCIKEIKEDM-EKDKPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVA 677
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
L PT +LA QH+ ERF ++P +K+ +LSRF++ E+ + + + G ++I+VGTH
Sbjct: 678 FLCPTTILAYQHYTNFLERFKEFP-VKIEMLSRFRTPKEQAQIIKGLADGTIDIVVGTHR 736
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LL + V + +LGLL++DEEQRFGV KEKI K ++DVLTLSATPIPRTL+++L G RD
Sbjct: 737 LLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLIGIRD 796
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S++ PP +R P++T++ F++E + AI E+ RGGQV++V R++G+E+ +F+++
Sbjct: 797 MSILENPPEDRFPVETYVVEFNEELIKDAILREVGRGGQVYFVYNRVQGIEKMANFIKEL 856
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P IA+AHGQ +LE+ M F +G +L+ T I+E+GLDI N NTIIV D + G
Sbjct: 857 VPNCRIAVAHGQMEENKLEQVMVDFLKGEYDVLVTTTIIETGLDIPNVNTIIVYDADKLG 916
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
LAQLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E E G GF++A +D+ I
Sbjct: 917 LAQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMRDLEI 976
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININPRLP 501
RG G + G +Q G + VG DL+ ++L E++ + P + + ID+ ++ +
Sbjct: 977 RGAGNLLGAEQHGHIDAVGYDLYLKLLEEAIRNLKGEQ----PKEEITTTIDLKVSAYID 1032
Query: 502 SEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
S YI +EM + A + +D +M+ E L ++G P +E LL Y++ +A
Sbjct: 1033 SSYIEDENLRLEMYKKIASIESRED---MMEVAEELIDRFGDYPKPVEALLDIAYIKAVA 1089
Query: 561 ADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTF 604
+ + + +I V +K V ++ M E ++ +LTF
Sbjct: 1090 SKLHMVEISEKSSGVILKFKDKDSVDMETVEKMVRE-YKGNLTF 1132
>gi|199598792|ref|ZP_03212204.1| Transcription-repair coupling factor (superfamily II helicase)
[Lactobacillus rhamnosus HN001]
gi|199590297|gb|EDY98391.1| Transcription-repair coupling factor (superfamily II helicase)
[Lactobacillus rhamnosus HN001]
Length = 1175
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/524 (41%), Positives = 335/524 (63%), Gaps = 7/524 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
T W++ K K I+ + +L++LY R +K + P + +F +FPY TPDQ +
Sbjct: 566 TEWQKTKRKVAARIEDIADELIDLYAKREAEKGYAFGPDDDLQQKFEDEFPYPETPDQLR 625
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
+ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F V GKQ +L PT +LA+QHF
Sbjct: 626 SAKEIKRDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPTTILAQQHF 684
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
D + +RF+ +P +K+GLLSRFQ+ + + + +K+G ++I+VGTH LL V + +LGL
Sbjct: 685 DTMKDRFADFP-VKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDVAFRDLGL 743
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R P
Sbjct: 744 LVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYP 803
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+T + + + AI+ E++RGGQVFY+ R++ +E + L++ P I AHGQ
Sbjct: 804 IQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASIGYAHGQM 863
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR
Sbjct: 864 TETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGR 923
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ + A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G
Sbjct: 924 SSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHG 983
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +VG DL+ +ML E+++K + +V +ID+ + LP++Y+ +E+
Sbjct: 984 FIDSVGYDLYTQMLQEAVNK--RRGLKTVQKTDAEIDLGLEAYLPTDYVADSRQKIELYK 1041
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
+A + + +E L ++G P + LL +++R A
Sbjct: 1042 RIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFA 1083
>gi|229551616|ref|ZP_04440341.1| transcription-repair coupling factor [Lactobacillus rhamnosus LMS2-1]
gi|229315020|gb|EEN80993.1| transcription-repair coupling factor [Lactobacillus rhamnosus LMS2-1]
Length = 1182
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/524 (41%), Positives = 335/524 (63%), Gaps = 7/524 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
T W++ K K I+ + +L++LY R +K + P + +F +FPY TPDQ +
Sbjct: 573 TEWQKTKRKVAARIEDIADELIDLYAKREAEKGYAFGPDDDLQQKFEDEFPYPETPDQLR 632
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
+ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F V GKQ +L PT +LA+QHF
Sbjct: 633 SAKEIKRDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPTTILAQQHF 691
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
D + +RF+ +P +K+GLLSRFQ+ + + + +K+G ++I+VGTH LL V + +LGL
Sbjct: 692 DTMKDRFADFP-VKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDVAFRDLGL 750
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R P
Sbjct: 751 LVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYP 810
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+T + + + AI+ E++RGGQVFY+ R++ +E + L++ P I AHGQ
Sbjct: 811 IQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASIGYAHGQM 870
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR
Sbjct: 871 TETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGR 930
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ + A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G
Sbjct: 931 SSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHG 990
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +VG DL+ +ML E+++K + +V +ID+ + LP++Y+ +E+
Sbjct: 991 FIDSVGYDLYTQMLQEAVNK--RRGLKTVQKTDAEIDLGLEAYLPTDYVADSRQKIELYK 1048
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
+A + + +E L ++G P + LL +++R A
Sbjct: 1049 RIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFA 1090
>gi|347547686|ref|YP_004854014.1| putative transcription-repair coupling factor [Listeria ivanovii
subsp. ivanovii PAM 55]
gi|346980757|emb|CBW84664.1| Putative transcription-repair coupling factor [Listeria ivanovii
subsp. ivanovii PAM 55]
Length = 1179
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 245/627 (39%), Positives = 371/627 (59%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E K PR L+KL T W+R K K + ++Q + DL++LY R +K + P EF
Sbjct: 560 EGKSPR-LNKLG-GTEWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSPDEEMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 618 EDAFPYQETDDQLRSIAEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K G ++I+VGTH
Sbjct: 677 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGVKSGTVDIVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y++LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVEYHDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVETITQKADEISA 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +AIAHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 856 MVPDARVAIAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 1032
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + + ++G+ P +E L ++ A
Sbjct: 1033 PEYYITDGRQKIEMYKRFRNI--EVLNDLEELQSDMIDRFGEYPEEVEYLFTMTELKVHA 1090
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++G IT +++ G++ ++ ++ F MI + EG
Sbjct: 1091 LEVGIESVKQEQNKITILFSESGTAGIRGDIVMQIIGEFGRMI----------GVGMEGA 1140
Query: 608 QIKAELLLELPREQLLNWIFQ--CLAE 632
Q+K + + + + L W++Q LAE
Sbjct: 1141 QLK--ITVNVQNKPLKEWLYQIKSLAE 1165
>gi|188584709|ref|YP_001916254.1| transcription-repair coupling factor [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349396|gb|ACB83666.1| transcription-repair coupling factor [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 1196
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 228/571 (39%), Positives = 353/571 (61%), Gaps = 34/571 (5%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQK 95
++ W++ K + K +++++ DL++LY R +K + ++ P EF FPYE TPDQK
Sbjct: 583 SSEWQKVKQRVKSSVKELAEDLLKLYAERSSRKGYAFSQDTPWQKEFEDYFPYELTPDQK 642
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
KA +++ DL E E PMDRL+CGDVG+GKTEVA+RA F V GKQ VL PT +LA+QH
Sbjct: 643 KAISEIKEDL-ESEQPMDRLLCGDVGYGKTEVAMRAAFKAVMEGKQVCVLVPTTILAQQH 701
Query: 156 FDVVSERFSKYP-DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNL 214
F ERF+ YP DI+V +SRF S+ +++ + +K G+ II+GTH LL V + +L
Sbjct: 702 FQTFKERFAPYPVDIRV--ISRFSSQKDEKLVKEEMKEGNAEIIIGTHKLLNKSVKFRDL 759
Query: 215 GLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER 274
GLL++DEEQRFGV+ KEKI K ++DVLT++ATPIPRTL+++L G RD S+I TPP R
Sbjct: 760 GLLIIDEEQRFGVQHKEKIKMLKKNLDVLTMTATPIPRTLHMSLVGVRDLSVIETPPEGR 819
Query: 275 LPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHG 334
P++T++ S + + A+ E+ R GQV+ V R+KG+ + + P + +AHG
Sbjct: 820 FPVQTYVMEHSPQLIREAVNREISREGQVYVVHNRVKGINKVAKEVADWVPDAKVGVAHG 879
Query: 335 QQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRV 394
Q +QLE M F +G +L+ T+IVE+GLDIQN NTII+ + + GL+Q YQLRGRV
Sbjct: 880 QMPEKQLERVMLDFYEGKYDVLVSTSIVEAGLDIQNVNTIIIYNADRMGLSQPYQLRGRV 939
Query: 395 GRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQ 454
GR+++ A+AYL Y +L+ +A +RL A++E ELG GF+LA +D+ IRG G I G +Q
Sbjct: 940 GRSNRMAYAYLTYQKDKVLTQEAEKRLKAIKEFTELGSGFKLALRDLEIRGAGNILGPEQ 999
Query: 455 TGDVGNVGVDLFFEMLFESLSKV--------------DEHCVISVPYKSVQIDININPRL 500
G + VG D++ +ML +++ ++ D+ + P + V++++NIN L
Sbjct: 1000 HGHIMAVGFDMYTKMLKDAIKEISQESQTQEETTKIQDDKTEVEKP-EEVKVELNINAYL 1058
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTES------LRRQYGKEPYSMEILLKKL 554
P+ YI+ E + + +A + ++E+ L+ ++G P ++ LL
Sbjct: 1059 PTTYISDHEQKITIYKKAR--------SINSYSEANDLETELKDRFGSLPQEVKNLLDIT 1110
Query: 555 YVRRMAADIGITKIYASGKMVGMKTNMNKKV 585
++ +A + GI I G V + + +K+
Sbjct: 1111 RLKVLARETGIISITRQGYWVHLDLDPRQKI 1141
>gi|389571463|ref|ZP_10161558.1| transcription-repair coupling factor [Bacillus sp. M 2-6]
gi|388428863|gb|EIL86653.1| transcription-repair coupling factor [Bacillus sp. M 2-6]
Length = 1177
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/574 (39%), Positives = 352/574 (61%), Gaps = 19/574 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + +
Sbjct: 558 SEGKEPK-LYKLGGSD-WKRVKKKVESSVQDIADDLIKLYAEREASKGYAFSPDHEMQRQ 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FESAFPYQETDDQIRSIHEIKQDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QHFD + +RF YP +K+ LSRF+++ E E L +K+G +++++GT
Sbjct: 675 VALLVPTTILAQQHFDTIMDRFQDYP-VKIAQLSRFRTRKETTETLKGLKNGTIDMVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL +VY +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDIVYKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P ++ AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDIPNVNTLIVHDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + ++ +ID+ I+ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGDTTAQEKFEP-EIDLQIDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI+ + +EM + I + + + ++G+ P + L
Sbjct: 1033 DSYISDGKQKIEMYKQFRAIG--SIEERKELQDEMIDRFGEYPQEVADLFT--------- 1081
Query: 562 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTS 595
I K+YA + V + M K + ++ +D S
Sbjct: 1082 -IATMKVYAVQERVEL-IKMEKGIVRLTLDEKAS 1113
>gi|256419455|ref|YP_003120108.1| transcription-repair coupling factor [Chitinophaga pinensis DSM 2588]
gi|256034363|gb|ACU57907.1| transcription-repair coupling factor [Chitinophaga pinensis DSM 2588]
Length = 1126
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 230/560 (41%), Positives = 337/560 (60%), Gaps = 17/560 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
+ E PR ++KL + AW++ K K K ++ + DL++LY R Q P+ P
Sbjct: 498 YSGKEGVEPR-VNKLG-SDAWDKLKEKAKTQVKDIAKDLIQLYAARKAQTGFPHSPDTYL 555
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ KA DV+RD+ + PMDRL+CGDVGFGKTE+A+RA F +
Sbjct: 556 QTELEASFLYEDTPDQSKATADVKRDM-QSPAPMDRLVCGDVGFGKTEIAVRAAFKSIVD 614
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQA VL PT +LA QH+ S+R +P V L+RF+S EK+E L + G ++II
Sbjct: 615 GKQAAVLVPTTILAFQHYKTFSDRLKDFP-CTVDYLNRFKSAKEKKETLQRLAEGKIDII 673
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH+LL V + +LG++VVDEEQ+FGV KEK+ KI+VD LTL+ATPIPRTL +L
Sbjct: 674 IGTHALLSKDVKFKDLGVMVVDEEQKFGVAAKEKLKQLKINVDTLTLTATPIPRTLQFSL 733
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I+TPPP R PI+T + F + + AI YE +RGGQV++V R+KGL E
Sbjct: 734 MGARDLSVINTPPPNRQPIETEVHVFDHDLIRDAIYYETERGGQVYFVYNRVKGLGEMSS 793
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
++ P + IA AHGQ QLEE + F +L+CTNIVESG+DI NANTII+ +
Sbjct: 794 LIKGLCPDLSIATAHGQMEGHQLEEVILDFIDRKYDVLVCTNIVESGVDIPNANTIIINN 853
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
FGL+ L+QLRGRVGR++K+A YL P S L + +RL LE+ ELG GFQ+A
Sbjct: 854 AHHFGLSDLHQLRGRVGRSNKKAFCYLLAPPISTLPGDSRKRLQTLEQHSELGSGFQIAM 913
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ------- 491
+D+ IRG G + G +Q+G + +G D++ ++L E++ ++ ++ + ++
Sbjct: 914 RDLDIRGAGNLLGGEQSGFMAEIGFDMYQKILDEAIRELKQNEFRDLFKDQLEEKKDFVS 973
Query: 492 ---IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 548
ID ++ +P Y+ ++ + + E + + L F ++ ++G P ++
Sbjct: 974 DCTIDTDLEILIPDSYVESIQERLNLYQELDNITLES--KLQAFEVEMQDRFGPVPEPVK 1031
Query: 549 ILLKKLYVRRMAADIGITKI 568
L + R MA +G K+
Sbjct: 1032 DLFCMIRCRWMAIKLGFEKM 1051
>gi|392959846|ref|ZP_10325323.1| transcription-repair coupling factor [Pelosinus fermentans DSM 17108]
gi|421053486|ref|ZP_15516462.1| transcription-repair coupling factor [Pelosinus fermentans B4]
gi|421059172|ref|ZP_15521794.1| transcription-repair coupling factor [Pelosinus fermentans B3]
gi|421063972|ref|ZP_15525901.1| transcription-repair coupling factor [Pelosinus fermentans A12]
gi|421071155|ref|ZP_15532278.1| transcription-repair coupling factor [Pelosinus fermentans A11]
gi|392441911|gb|EIW19524.1| transcription-repair coupling factor [Pelosinus fermentans B4]
gi|392447502|gb|EIW24743.1| transcription-repair coupling factor [Pelosinus fermentans A11]
gi|392455815|gb|EIW32586.1| transcription-repair coupling factor [Pelosinus fermentans DSM 17108]
gi|392459431|gb|EIW35839.1| transcription-repair coupling factor [Pelosinus fermentans B3]
gi|392461988|gb|EIW38119.1| transcription-repair coupling factor [Pelosinus fermentans A12]
Length = 1089
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 229/616 (37%), Positives = 376/616 (61%), Gaps = 18/616 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E PR L+K+ + W + K K + A+ M +L+E+Y R + P P E
Sbjct: 485 SEGDAPR-LNKMGGSD-WLKAKGKAEKAVADMAKELLEIYAQRKVASGFAFDPDTPWQKE 542
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPYE TPDQ A ++++ D+ E+ PMDRL+CGDVGFGKTEVA+RA + V GKQ
Sbjct: 543 FEDAFPYEETPDQLSAIIEIKSDM-EKSQPMDRLLCGDVGFGKTEVAIRAAYKAVMGGKQ 601
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT VLA+QH+ +S RF+ + + V ++SRF++ E+ ++ + G +++++GT
Sbjct: 602 VAILVPTTVLAQQHYQTISARFAGFGPV-VDVISRFRNAREQRGTIEALVSGQVDVLIGT 660
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L S V++ N+GLL+VDEEQRFGVKQKEK+ + +DVLTLSATPIPRTL+++L G
Sbjct: 661 HRILQSDVIFKNIGLLIVDEEQRFGVKQKEKLKKWSAGIDVLTLSATPIPRTLHMSLVGA 720
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP ER P+++++ +++E + AIK EL RGGQV++V R++ +++ L
Sbjct: 721 RDMSIIETPPEERFPVQSYVVEYNEEVMRDAIKRELKRGGQVYFVYNRVQTIDKMYRRLA 780
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I +AHGQ LE+ M F +G +L+CT+I+E+GLD+ NANTIIV D
Sbjct: 781 EMLPDAKIRVAHGQMPEEMLEQAMLDFYEGTDDVLLCTSIIENGLDVPNANTIIVYDADH 840
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
FGL+QLYQ+RGRVGR+ + A AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 841 FGLSQLYQMRGRVGRSHRMAFAYFTYRQDKVLTEVAEKRLQAIKEFAELGAGFKIAMRDL 900
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG +++ +L E++ ++ + P + V ++ N++ +
Sbjct: 901 EIRGAGNLLGSQQHGHIVSVGFEMYCRLLDEAVQQLKTGRTLEAPVEPV-LEFNVDAYIS 959
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
+YI+ + +E+ AA ++ + + L ++G+ P + LL+ + ++ +
Sbjct: 960 GDYISDAMHKIEIYQRI--AACRNEKHISDLVDELIDRFGEPPGCVLNLLEVVKIKNFSR 1017
Query: 562 DIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 617
IGI + + + K N+ + + ++ + V + EG ++K +++
Sbjct: 1018 AIGIRSVIQQPNYIEVAFIDKPNVKPEQIMALKEAFPARV---MIYPEGIRLKT---VQI 1071
Query: 618 PREQLLNWIFQCLAEL 633
++LLNW+ + L
Sbjct: 1072 SNDKLLNWLVKVFTTL 1087
>gi|225575737|ref|ZP_03784347.1| hypothetical protein RUMHYD_03830, partial [Blautia hydrogenotrophica
DSM 10507]
gi|225037050|gb|EEG47296.1| transcription-repair coupling factor, partial [Blautia
hydrogenotrophica DSM 10507]
Length = 1044
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 236/605 (39%), Positives = 369/605 (60%), Gaps = 11/605 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ E K PR L+KL T W R KT+ K A++ + DL++LY R +++ Y +
Sbjct: 426 YAGQEAKTPR-LNKLG-TQEWNRTKTRVKGAVKDIARDLVKLYATRQEKEGFVYGTDTVW 483
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPYE T DQ +A D +RD+ E MDRLICGDVG+GKTE+ALRA F +
Sbjct: 484 QKEFEEMFPYEETEDQIQAIEDTKRDM-ESTKIMDRLICGDVGYGKTEIALRAAFKAIQE 542
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ + L PT +LA+QH++ +R ++P ++V LL RF++ AE+ + L+ +K G ++++
Sbjct: 543 GKQVVYLVPTTILAQQHYNTFVQRMKEFP-VRVELLCRFRTPAEQRKTLEGLKKGWVDVV 601
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL+++L
Sbjct: 602 IGTHRVLSKDVEYKDLGLLIIDEEQRFGVTHKEKIKKLKNNVDVLTLTATPIPRTLHMSL 661
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S++ PP +R+PI+T++ + +E V A++ EL RGGQV+YV R+ + E
Sbjct: 662 IGIRDMSVLEEPPMDRMPIQTYVMEYDEETVREAVQRELKRGGQVYYVYNRVNDIAEVAS 721
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L Q P V + AHGQ R+LE+ M +F G + +L+ T I+E+GLDI N NT+I+ D
Sbjct: 722 RLSQLLPDVQVGFAHGQMSERELEKVMYEFINGELDVLVSTTIIETGLDISNVNTMIIHD 781
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
++GL+QLYQLRGR+GR+++ A+A+L Y S+L + A +RL+A+ E +LG GF++A
Sbjct: 782 SDRYGLSQLYQLRGRIGRSNRTAYAFLMYRKNSILKETAEKRLSAIREFTDLGSGFKIAM 841
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ +RG G + G QQ G + VG DL+ +ML E++ + V+ +++ ID++++
Sbjct: 842 RDLELRGAGNLLGAQQHGHMQAVGYDLYCKMLNEAVKEAKGITVME-DFETT-IDLSMDA 899
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P+ YI + +++ Q+ + M E L ++G+ P ++ LL ++
Sbjct: 900 FIPNSYIANEFQKLDIYKRIAGIENQEEYEDM--LEELLDRFGEPPKAVMNLLAIATLKA 957
Query: 559 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELP 618
A + +I G V + + K+ I + E R L F ++ K L +L
Sbjct: 958 AAHRAYLREIKQRGAQVKLTLHEEAKIDAAGIPILLKEYGRR-LQFRAEE-KPYFLFDLN 1015
Query: 619 REQLL 623
E +L
Sbjct: 1016 GEGIL 1020
>gi|258446110|ref|ZP_05694271.1| transcription-repair coupling factor [Staphylococcus aureus A6300]
gi|257855087|gb|EEV78029.1| transcription-repair coupling factor [Staphylococcus aureus A6300]
Length = 1168
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTSKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTENAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|257432620|ref|ZP_05608982.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus E1410]
gi|257282485|gb|EEV12618.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus E1410]
Length = 1168
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 355/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P+ +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPENKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|417654388|ref|ZP_12304109.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21193]
gi|329731067|gb|EGG67439.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21193]
Length = 1168
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTSKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|452854118|ref|YP_007495801.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|452078378|emb|CCP20128.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 1177
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/493 (43%), Positives = 325/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + +
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYAFSPDHEMQRQ 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FESAFPYQETEDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETIMERFQDYP-INIGLLSRFRTRKESNETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVDDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + S +++ +IDI ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFET-EIDIELDAYIP 1032
Query: 502 SEYINHLENPMEM 514
YI + ++M
Sbjct: 1033 ENYIQDGKQKIDM 1045
>gi|385267081|ref|ZP_10045168.1| transcription-repair coupling factor [Bacillus sp. 5B6]
gi|385151577|gb|EIF15514.1| transcription-repair coupling factor [Bacillus sp. 5B6]
Length = 1177
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/493 (43%), Positives = 325/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + +
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYAFSPDHEMQRQ 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FESAFPYQETEDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETIMERFQDYP-INIGLLSRFRTRKESNETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVDDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + S +++ +IDI ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFET-EIDIELDAYIP 1032
Query: 502 SEYINHLENPMEM 514
YI + ++M
Sbjct: 1033 ENYIQDGKQKIDM 1045
>gi|384549367|ref|YP_005738619.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302332216|gb|ADL22409.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 1168
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIEEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|435852897|ref|YP_007314216.1| transcription-repair coupling factor Mfd [Halobacteroides halobius
DSM 5150]
gi|433669308|gb|AGB40123.1| transcription-repair coupling factor Mfd [Halobacteroides halobius
DSM 5150]
Length = 1160
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 225/546 (41%), Positives = 346/546 (63%), Gaps = 14/546 (2%)
Query: 36 DTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQ 94
D+ W + K + K ++++M DL+ELY R + K+ +F A FPY+ TPDQ
Sbjct: 565 DSDNWAKAKARVKKSVEEMAEDLLELYAKREMATGYAFSKDTEWQVDFEAAFPYQETPDQ 624
Query: 95 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 154
KA +V+ D+ E E PMDRL+CGDVG+GKTEVA+RA+F V GKQ L PT +LA+Q
Sbjct: 625 LKAIEEVKADM-ESEQPMDRLLCGDVGYGKTEVAIRAMFKAVMDGKQVAFLVPTTILAQQ 683
Query: 155 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNL 214
H++ + +RFS+YP + V +LSRF++ E+++ ++ ++ G +II+GTH LL + +NNL
Sbjct: 684 HWNNLIDRFSEYP-VNVSMLSRFRTAKEQQKIIEDLEAGRTDIIIGTHRLLSQDIKFNNL 742
Query: 215 GLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER 274
GL+VVDEEQRFGV QKEK+ K ++D+LTL+ATPIPRTL+++L G RD S+I T P R
Sbjct: 743 GLVVVDEEQRFGVTQKEKLKGIKENIDILTLTATPIPRTLHMSLVGIRDISVIETAPKNR 802
Query: 275 LPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHG 334
PI+T++ + E V A+ EL+R GQ++ V R+K ++E +Q P +IA+AHG
Sbjct: 803 YPIRTYVGEYKDELVKDALVKELNRDGQIYVVHNRVKDIKEVASQMQSLVPQAEIAVAHG 862
Query: 335 QQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRV 394
Q ++LE M F +G IL+ T I+E+G+DI N NTII+ + GLAQLYQLRGRV
Sbjct: 863 QMNEKRLERLMLDFLEGNFDILVSTTIIETGMDIPNVNTIIINQADKMGLAQLYQLRGRV 922
Query: 395 GRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQ 454
GR+++ A+AYL Y +LS+ A +RL A++E LG GF++A +D+ IRG G I G +Q
Sbjct: 923 GRSNRIAYAYLLYDQGRILSEIAEKRLKAIKEFTSLGSGFKIAMRDLEIRGAGNILGPEQ 982
Query: 455 TGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEM 514
G + VG L+ ++L ++ K+ + V++++ ++ LP++YI + +E+
Sbjct: 983 HGHIEAVGFSLYCKLLETAIKKLQNK---EEAERKVKMELKVDAYLPADYIADSKQKIEV 1039
Query: 515 VNEAEKAAEQDIWCLMQFTE---SLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYAS 571
E + I L + TE L+ ++GK P +++ LLK +R +A + + +I
Sbjct: 1040 YKEI-----KTISTLEEQTELVNQLQDRFGKLPPAVKRLLKLTKLRILARKLLVEEITEK 1094
Query: 572 GKMVGM 577
V +
Sbjct: 1095 NDKVKL 1100
>gi|154684574|ref|YP_001419735.1| hypothetical protein RBAM_000640 [Bacillus amyloliquefaciens FZB42]
gi|394994189|ref|ZP_10386917.1| transcription-repair coupling factor [Bacillus sp. 916]
gi|429503588|ref|YP_007184772.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
subsp. plantarum AS43.3]
gi|154350425|gb|ABS72504.1| Mfd [Bacillus amyloliquefaciens FZB42]
gi|393804965|gb|EJD66356.1| transcription-repair coupling factor [Bacillus sp. 916]
gi|429485178|gb|AFZ89102.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
subsp. plantarum AS43.3]
Length = 1177
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/493 (43%), Positives = 325/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + +
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYAFSPDHEMQRQ 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FESAFPYQETEDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETIMERFQDYP-INIGLLSRFRTRKESNETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVDDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + S +++ +IDI ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFET-EIDIELDAYIP 1032
Query: 502 SEYINHLENPMEM 514
YI + ++M
Sbjct: 1033 ENYIQDGKQKIDM 1045
>gi|302390888|ref|YP_003826708.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM
5501]
gi|302202965|gb|ADL11643.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM
5501]
Length = 1175
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/564 (39%), Positives = 352/564 (62%), Gaps = 20/564 (3%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E +P+ S S+ W R K + K ++Q+M +L+++Y R + + ++ EF
Sbjct: 565 EGNKPKLYSLGSND--WARVKQRVKESVQEMAEELLDIYAEREVKDGYAFSEDTVWQQEF 622
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
+ FPYE TPDQ K +V+ D+ E PMDRL+CGDVG+GKTEVA+RA F V GKQ
Sbjct: 623 ESDFPYEETPDQLKTIEEVKEDM-ESPQPMDRLLCGDVGYGKTEVAIRAAFKAVLDGKQV 681
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
+L PT +LA+QH + +RF YP +KVG+LSRF++ E+++ ++ +K G ++II+GTH
Sbjct: 682 AMLVPTTILAQQHLNTFIDRFEDYP-VKVGMLSRFKTAKEQKKIIEDLKQGIIDIIIGTH 740
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
+L + + +N+LG L+VDEEQRFGVK KE++ K S+DVLTL+ATPIPRTL+++L G R
Sbjct: 741 RILSTDIEFNDLGFLIVDEEQRFGVKHKERLKQIKKSIDVLTLTATPIPRTLHMSLVGVR 800
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D SLI TPP R PI+T++ +S + + AI+ E+DRGGQV++V R+K +++ +++
Sbjct: 801 DMSLIETPPQNRYPIRTYVREYSDDLIREAIRKEIDRGGQVYFVHNRVKNIDKVAAKIKK 860
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P ++ AHGQ +LE+ M F G +L+CT I+E+GLDI N NTI++ + Q
Sbjct: 861 LLPKAEVVTAHGQMSEAKLEKIMLGFLDGEHDVLVCTTIIETGLDIPNVNTILINNADQL 920
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GLAQLYQLRGRVGR ++ A+AYL Y +LS+ A +RL A++E LG GF++A +D+
Sbjct: 921 GLAQLYQLRGRVGRTNRVAYAYLLYQQDQVLSEVAEKRLQAIKEFTNLGSGFKIAMRDLE 980
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G I G +Q G + +G L+ ++L ++++++ + + ID+ ++ +P
Sbjct: 981 IRGAGNILGPKQHGHIEAIGFSLYCKLLEQAVNEL-KGEDDEEEAAEINIDLELDAYIPE 1039
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTE------SLRRQYGKEPYSMEILLKKLYV 556
+YI + +E+ + I +M TE LR ++G P S+ L+ +
Sbjct: 1040 DYIPDSKQKIEIYKK--------ISGIMNLTEVEEVKAELRDRFGAIPQSVLNLVMISKI 1091
Query: 557 RRMAADIGITKIYASGKMVGMKTN 580
+ +A ++ + I + ++ + N
Sbjct: 1092 KVLALNLDVKSIESKDGLIMVNFN 1115
>gi|340357162|ref|ZP_08679787.1| transcription-repair coupling factor [Sporosarcina newyorkensis 2681]
gi|339618571|gb|EGQ23167.1| transcription-repair coupling factor [Sporosarcina newyorkensis 2681]
Length = 1177
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 223/523 (42%), Positives = 335/523 (64%), Gaps = 9/523 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQFPYEPTPDQKKAF 98
W + K K AIQ + DL++LY R +K + ++ + F FPYE T DQ ++
Sbjct: 571 WTKTKRKVTAAIQDIADDLIKLYAKREAEKGFAFSEDDDLQRSFENAFPYEETQDQLQSI 630
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F V+ GKQ L PT +LA+QHF+
Sbjct: 631 EEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAVTNGKQVAFLVPTTILAQQHFET 689
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF+ YP + V +L+RF++K +++E + +K G ++I+VGTH LL VVY +LGLLV
Sbjct: 690 MKERFADYP-VTVSVLNRFRTKKQQDETIKGLKAGTVDIVVGTHRLLSKDVVYQDLGLLV 748
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 749 VDEEQRFGVTHKEKLKQLKTNVDVLTLTATPIPRTLHMSMVGVRDLSVIETPPSNRFPVQ 808
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ + V AI+ E+ RGGQVFY+ R++ ++ ++ ++Q P IA AHG+
Sbjct: 809 TYVMEHNAGLVREAIEREMGRGGQVFYLYNRVEEMDRKVEEIRQLVPEARIASAHGRMGE 868
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
LE + F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 869 AALEAVIMSFLEGEYDVLVTTTIIETGIDIPNVNTLIVHDADRMGLSQLYQLRGRVGRSN 928
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A++Y+ Y +L++ A RL A++E ELG GF++A +D+ IRG G + G QQ G +
Sbjct: 929 RVAYSYMLYQRDKVLTEVAENRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGSQQHGFI 988
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ ++L E++ + + ++ + V+I + IN LP YI ++M
Sbjct: 989 DSVGFDLYSQLLQEAIEE-RQTGIVKEEKQDVEISLPINAYLPETYIQDGYQKIQMYKRV 1047
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
KA E + L E + R +G P ++LL+ V RM A
Sbjct: 1048 -KAIESNEDYLELVDEMIDR-FGDMPLEADLLLR---VGRMKA 1085
>gi|422417701|ref|ZP_16494656.1| transcription-repair coupling factor, partial [Listeria seeligeri
FSL N1-067]
gi|313635134|gb|EFS01462.1| transcription-repair coupling factor [Listeria seeligeri FSL
N1-067]
Length = 746
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 245/620 (39%), Positives = 368/620 (59%), Gaps = 25/620 (4%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + P EF
Sbjct: 128 EGKSPR-LNKLG-GAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSPDEEMQREF 185
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 186 EDAFPYQETDDQLRSIAEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 244
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K G ++I+VGTH
Sbjct: 245 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKSGTVDIVVGTH 303
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y++LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 304 RLLSKDVEYHDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 363
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 364 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVETITQKADEISA 423
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +AIAHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 424 MVPDARVAIAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 483
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 484 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 543
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 544 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 600
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTE---SLRRQYGKEPYSMEILLKKLYVR 557
P YI +EM ++I L F E + ++G+ P +E L ++
Sbjct: 601 PEYYITDGRQKIEMYKRF-----RNIEGLNDFEELQSDMIDRFGEYPEEVEYLFTMTELK 655
Query: 558 RMAADIGITKIYASGKMVGM--KTNMNKKVFKMMIDSMTSEVHRN-SLTFEGDQIKAELL 614
A ++GI + + M + + ++ + E R + EG Q+K +
Sbjct: 656 VHALEVGIESVKQEQNKITMLFSESGTASIRGDVVMQIIGEFGRMVGVGMEGTQLK--IT 713
Query: 615 LELPREQLLNWIFQC--LAE 632
+ + + L W++Q LAE
Sbjct: 714 INVQNKPLKEWLYQVKSLAE 733
>gi|311070702|ref|YP_003975625.1| transcription-repair coupling factor [Bacillus atrophaeus 1942]
gi|419823434|ref|ZP_14346981.1| transcription-repair coupling factor [Bacillus atrophaeus C89]
gi|310871219|gb|ADP34694.1| transcription-repair coupling factor [Bacillus atrophaeus 1942]
gi|388472407|gb|EIM09183.1| transcription-repair coupling factor [Bacillus atrophaeus C89]
Length = 1177
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/493 (43%), Positives = 325/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + E
Sbjct: 558 SEGKEPK-LYKLGGS-EWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPDHEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FESAFPYQETEDQLRSINEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP + VGLLSRF+++ E E + +K+G +++++GT
Sbjct: 675 VALLVPTTILAQQHYETIMERFQDYP-LTVGLLSRFRTRKEANETIKGLKNGTVDMVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVDDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + S +++ +ID+ ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGDTSKSEQFET-EIDVELDAYIP 1032
Query: 502 SEYINHLENPMEM 514
YI + ++M
Sbjct: 1033 ETYIQDGKQKIDM 1045
>gi|329925538|ref|ZP_08280412.1| transcription-repair coupling factor [Paenibacillus sp. HGF5]
gi|328939821|gb|EGG36161.1| transcription-repair coupling factor [Paenibacillus sp. HGF5]
Length = 1175
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/543 (41%), Positives = 336/543 (61%), Gaps = 13/543 (2%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFPYEPTPDQKK 96
W R K K + ++Q + DL++LY R Q P Y EF FPY+ TPDQ +
Sbjct: 562 WTRVKNKVRSSVQDIADDLIKLYAER--QSAPGYGFEKDTSEQQEFEDMFPYDETPDQLR 619
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F GKQ VL PT +LA+QH+
Sbjct: 620 AITEIKKDM-EQNRPMDRLLCGDVGYGKTEVAVRAAFKAAIEGKQVAVLVPTTILAQQHY 678
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF+ YP I + +LSRF+S+ E+ E + +K G ++I++GTH LL +V+ +LGL
Sbjct: 679 ETFRERFANYP-INIQVLSRFRSRKEQNETIKKVKQGSVDILIGTHRLLSQDIVFKDLGL 737
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P
Sbjct: 738 LIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFP 797
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T++ S+ V AI+ EL RGGQV+Y+ R++G++E + P + + HGQ
Sbjct: 798 VQTYVVEHSQTLVREAIERELARGGQVYYLYNRVQGIQEMAAQISMLVPEARVGVGHGQM 857
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE+T+ F G +L+ T+I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR
Sbjct: 858 SETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQLRGRVGR 917
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+++ A+AY Y +L++ A +RL +++E ELG GF++A +D+ IRG G + G +Q G
Sbjct: 918 SNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHG 977
Query: 457 DVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK--SVQIDININPRLPSEYINHLENPM 512
+ +VG DL+ +ML E + KV S+P K + ID+ I+ LPS+YI +
Sbjct: 978 FIASVGFDLYSQMLAEEIQKRKVSMLGEPSLPSKDWNTSIDLGIDAYLPSDYIYDSIQKI 1037
Query: 513 EMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASG 572
E+ + + D + + L ++G+ P ++ LL ++ GI I G
Sbjct: 1038 EIYKKVAVVSSIDESA--ELEDELLDRFGELPLAVSNLLAVSRLKVYGRTYGIDSITQRG 1095
Query: 573 KMV 575
V
Sbjct: 1096 DDV 1098
>gi|333977675|ref|YP_004515620.1| transcription-repair coupling factor [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333821156|gb|AEG13819.1| transcription-repair coupling factor [Desulfotomaculum kuznetsovii
DSM 6115]
Length = 1179
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 231/552 (41%), Positives = 340/552 (61%), Gaps = 17/552 (3%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIA 80
E + PR LS+L W R K + K A+++M +L+ LY R Q P + P P
Sbjct: 564 EAETPR-LSRLGGAE-WSRVKGRVKEAVREMAQELLALYAAR--QALPGHAFSPDTPWQQ 619
Query: 81 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 140
EF A FPY+ TPDQ +A +V+ D+ ER PMDRL+CGDVG+GKTEVALRA F V GK
Sbjct: 620 EFEATFPYQETPDQLRAIQEVKADM-ERPRPMDRLLCGDVGYGKTEVALRAAFKAVMDGK 678
Query: 141 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 200
Q VL PT +LA+QH++ ERF+ +P + + +LSRF++ E+ + L + G ++I++G
Sbjct: 679 QVAVLVPTTILAQQHYNTFRERFAGFP-VTIEVLSRFRTPKEQRQVLAGLASGQVDIVIG 737
Query: 201 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 260
TH L+ VV+ +LGLLVVDEEQRFGV KEK+ K VDVLTL+ATPIPRTL+++L G
Sbjct: 738 THRLVQDDVVFKDLGLLVVDEEQRFGVAHKEKLKRLKQDVDVLTLTATPIPRTLHMSLVG 797
Query: 261 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 320
RD SL+ TPP R P++T++ + AI+ E+ RGGQV++V R+ L++ +L
Sbjct: 798 VRDTSLLETPPENRFPVQTYVLEEDPVLIREAIRREMGRGGQVYFVHNRVMDLDQVAAWL 857
Query: 321 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 380
Q P IA+AHGQ +LE+ M F GA +L+CT I+ESGLDI N NT+IV+D
Sbjct: 858 QGLVPEARIAVAHGQMKEEELEQIMLDFMDGAYDVLVCTTIIESGLDIPNVNTLIVKDAN 917
Query: 381 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKD 440
FGLAQLYQLRGRVGR+++ A+AY + +L++ A +RLAA+ E E G G+++A +D
Sbjct: 918 NFGLAQLYQLRGRVGRSNRLAYAYFTFRRDRVLNEMAEKRLAAIREFTEFGSGYKIAMRD 977
Query: 441 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ--IDININP 498
+ IRG G + G +Q G + VG DL+ +L E++ + P K V+ I++ +
Sbjct: 978 LEIRGAGNLLGAEQHGHIAAVGFDLYCRLLEEAVREARGEA----PEKVVETSIELPVEA 1033
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P Y+ + +++ ++ + + + L ++G P + LL +R
Sbjct: 1034 YIPDTYVRDADQKVDLYRRLAVVRREE--QVSELEDELVDRFGDPPQPVCTLLTVARLRA 1091
Query: 559 MAADIGITKIYA 570
+A+ +GI I A
Sbjct: 1092 LASSLGIKSITA 1103
>gi|402814489|ref|ZP_10864083.1| transcription-repair-coupling factor Mfd [Paenibacillus alvei DSM 29]
gi|402508336|gb|EJW18857.1| transcription-repair-coupling factor Mfd [Paenibacillus alvei DSM 29]
Length = 1176
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/566 (39%), Positives = 352/566 (62%), Gaps = 11/566 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
+ +E K P+ + KL T W + K K + +++ + DL++LY R + K+ P
Sbjct: 546 YVSSEEKEPK-IYKLGGTE-WTKVKNKVRSSVKDIADDLIKLYAARQASSGYAFEKDTPE 603
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY+ T DQ +A ++++D+ E+ +PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 604 QREFEDMFPYDETRDQLRAIEEIKQDM-EKPSPMDRLLCGDVGYGKTEVAVRAAFKAAIE 662
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +L PT +LA+QH++ ERF+ YP + +LSRF+S+ E+ E + +K G ++II
Sbjct: 663 GKQVAILVPTTILAQQHYETFRERFADYP-FNIQVLSRFRSRKEQNESMKGLKSGVVDII 721
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL VV+ +LGLL+VDEEQRFGV KEK+ K++VDVLTL+ATPIPRTL++++
Sbjct: 722 IGTHRLLSQDVVFKDLGLLIVDEEQRFGVTHKEKLKKLKMNVDVLTLTATPIPRTLHMSM 781
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ +S V AI+ EL RGGQV+++ R++G+ + D
Sbjct: 782 LGVRDLSVIETPPENRFPVQTYVLEYSDNLVREAIERELARGGQVYFLFNRVQGIHQMAD 841
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
++ P + ++HGQ +LE+T+ F G +L+ T+I+E+G+DI N NT+IV D
Sbjct: 842 HIKMLVPDARVTVSHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHD 901
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A
Sbjct: 902 ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLNEVAEKRLQAIKEFTELGSGFKIAM 961
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISVPYKSVQIDI 494
+D+ IRG G + G +Q G + +VG DL+ +ML + ++K +D + + ID+
Sbjct: 962 RDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLADEVNKRKAEIDGVAIEDQQELTTLIDL 1021
Query: 495 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
N++ LP YI +E+ + A D + + + L ++G+ P ++ LL
Sbjct: 1022 NVDAYLPPNYIYDSIQKIEIYKKVAGLATLD--EVEELRDELIDRFGEPPLAVLQLLAVA 1079
Query: 555 YVRRMAADIGITKIYASGKMVGMKTN 580
++ A G I G MV +K +
Sbjct: 1080 RLKLYAKQYGWESIVQRGDMVTIKVH 1105
>gi|384263686|ref|YP_005419393.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387896581|ref|YP_006326877.1| transcription-repair coupling factor [Bacillus amyloliquefaciens Y2]
gi|380497039|emb|CCG48077.1| transcription-repair coupling factor (superfamily II helicase)
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387170691|gb|AFJ60152.1| transcription-repair coupling factor (superfamily II helicase)
[Bacillus amyloliquefaciens Y2]
Length = 1177
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/493 (43%), Positives = 325/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + +
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYAFSPDHEMQRQ 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FESAFPYQETEDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETIMERFQDYP-INIGLLSRFRTRKESNETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVDDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + S +++ +IDI ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFET-EIDIELDAYIP 1032
Query: 502 SEYINHLENPMEM 514
YI + ++M
Sbjct: 1033 ENYIQDGKQKIDM 1045
>gi|148266962|ref|YP_001245905.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus JH9]
gi|150393008|ref|YP_001315683.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus JH1]
gi|257794256|ref|ZP_05643235.1| transcription-repair coupling factor [Staphylococcus aureus A9781]
gi|258420806|ref|ZP_05683742.1| transcription-repair coupling factor [Staphylococcus aureus A9719]
gi|258448018|ref|ZP_05696148.1| transcription-repair coupling factor [Staphylococcus aureus A6224]
gi|258453836|ref|ZP_05701809.1| transcription-repair coupling factor [Staphylococcus aureus A5937]
gi|295407393|ref|ZP_06817190.1| transcription-repair coupling factor [Staphylococcus aureus A8819]
gi|297246473|ref|ZP_06930313.1| transcription-repair coupling factor [Staphylococcus aureus A8796]
gi|384863831|ref|YP_005749190.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|387149663|ref|YP_005741227.1| Transcription-repair coupling factor [Staphylococcus aureus 04-02981]
gi|415694303|ref|ZP_11455829.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CGS03]
gi|417652217|ref|ZP_12301968.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21172]
gi|418423672|ref|ZP_12996821.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS1]
gi|418426616|ref|ZP_12999644.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS2]
gi|418432437|ref|ZP_13005239.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS4]
gi|418436153|ref|ZP_13007971.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS5]
gi|418439048|ref|ZP_13010772.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS6]
gi|418442031|ref|ZP_13013650.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS7]
gi|418448098|ref|ZP_13019506.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS9]
gi|418450924|ref|ZP_13022267.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS10]
gi|418453941|ref|ZP_13025215.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS11a]
gi|418456845|ref|ZP_13028061.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS11b]
gi|418638217|ref|ZP_13200519.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-3]
gi|418653633|ref|ZP_13215569.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-99]
gi|418878794|ref|ZP_13433027.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1165]
gi|418880207|ref|ZP_13434428.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1213]
gi|418883135|ref|ZP_13437336.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1769]
gi|418893960|ref|ZP_13448062.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1057]
gi|418919317|ref|ZP_13473264.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC348]
gi|418930529|ref|ZP_13484378.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1750]
gi|419784372|ref|ZP_14310141.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-M]
gi|147740031|gb|ABQ48329.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus JH9]
gi|149945460|gb|ABR51396.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus JH1]
gi|257788228|gb|EEV26568.1| transcription-repair coupling factor [Staphylococcus aureus A9781]
gi|257843198|gb|EEV67611.1| transcription-repair coupling factor [Staphylococcus aureus A9719]
gi|257858708|gb|EEV81581.1| transcription-repair coupling factor [Staphylococcus aureus A6224]
gi|257864007|gb|EEV86762.1| transcription-repair coupling factor [Staphylococcus aureus A5937]
gi|285816202|gb|ADC36689.1| Transcription-repair coupling factor [Staphylococcus aureus 04-02981]
gi|294967750|gb|EFG43782.1| transcription-repair coupling factor [Staphylococcus aureus A8819]
gi|297176660|gb|EFH35922.1| transcription-repair coupling factor [Staphylococcus aureus A8796]
gi|312828998|emb|CBX33840.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315128631|gb|EFT84634.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CGS03]
gi|329725040|gb|EGG61535.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21172]
gi|375018481|gb|EHS12059.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-99]
gi|375022920|gb|EHS16387.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-3]
gi|377693300|gb|EHT17673.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1165]
gi|377700075|gb|EHT24420.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1057]
gi|377716787|gb|EHT40968.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1769]
gi|377716866|gb|EHT41045.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1750]
gi|377733052|gb|EHT57099.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1213]
gi|377767529|gb|EHT91324.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC348]
gi|383364118|gb|EID41438.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-M]
gi|387721216|gb|EIK09096.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS2]
gi|387722608|gb|EIK10397.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS1]
gi|387727661|gb|EIK15168.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS4]
gi|387729600|gb|EIK17031.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS5]
gi|387731696|gb|EIK18962.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS6]
gi|387739763|gb|EIK26751.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS9]
gi|387740022|gb|EIK26995.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS7]
gi|387747063|gb|EIK33778.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS10]
gi|387748400|gb|EIK35083.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS11a]
gi|387749227|gb|EIK35867.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS11b]
Length = 1168
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTENAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|82750210|ref|YP_415951.1| transcription-repair coupling factor [Staphylococcus aureus RF122]
gi|123768536|sp|Q2YVY2.1|MFD_STAAB RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|82655741|emb|CAI80140.1| transcription-repair coupling factor [Staphylococcus aureus RF122]
Length = 1168
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|363893676|ref|ZP_09320771.1| transcription-repair coupling factor [Eubacteriaceae bacterium
ACC19a]
gi|361963478|gb|EHL16550.1| transcription-repair coupling factor [Eubacteriaceae bacterium
ACC19a]
Length = 1086
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 223/540 (41%), Positives = 340/540 (62%), Gaps = 7/540 (1%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQFPYEPTPDQK 95
++ W+++K K K A+ ++ L+ELY R QK + K+ EF A FP+E T DQ
Sbjct: 520 SSQWKKQKQKAKKAVDEIAKYLIELYAQRENQKGYAFSKDTVWQREFEALFPFEETQDQL 579
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
K+ D+++D+ E PMDRLICGDVG+GKTEVALR IF KQ L PT +LA+QH
Sbjct: 580 KSIKDIKKDM-ENIKPMDRLICGDVGYGKTEVALRGIFKACMDQKQVAFLVPTTILAQQH 638
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
+ +S+RF YP I V +LSRF++K E+E ++ +K+G +++I+GTH LL V + ++G
Sbjct: 639 YKTLSDRFENYP-INVDVLSRFKTKKEQEITIEKVKNGEVDVIIGTHRLLSKDVEFKDIG 697
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
+LV+DEEQRFGVK KEKI K ++DVLTL+ATPIPRTL ++L+G RD S++ PP +R
Sbjct: 698 MLVIDEEQRFGVKHKEKIKQIKSNIDVLTLTATPIPRTLNMSLSGIRDMSVLEEPPNDRY 757
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
PI T+++ + ++ AI+ E+ R GQVF+V ++ +++ +F+Q+ P IAIAHGQ
Sbjct: 758 PIITYVTEAREGIILDAIEREIARNGQVFFVYNSVENIDKMYNFIQKLVPSARIAIAHGQ 817
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
+ LE+ M + + +L+CT I+E+G+DI NANTIIV + + GL+QLYQLRGRVG
Sbjct: 818 MSAIALEDIMMDYLEKKYDVLLCTTIIETGMDISNANTIIVYNADKMGLSQLYQLRGRVG 877
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+ ++A+AYL Y +L++ A +RL A+ E E G GF++A D+ IRG G I GE Q
Sbjct: 878 RSSRQAYAYLMYEKDKVLTEIAQKRLKAIREFTEFGSGFRVAMMDLEIRGSGNILGEVQH 937
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMV 515
G + VG DL+ +ML +S +++ V S ++ +N+N +P YI +E+
Sbjct: 938 GHIEEVGYDLYIKMLNDSFNRLKGKTVEEKV--STEVYLNVNAYIPDNYIEDEIQKIEIY 995
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 575
+ ++ + +Q + ++ P +E LLK +R + IGI KI + +
Sbjct: 996 KKIASINSKEDYFDIQ--AEIEDRFSNIPQEVENLLKISSIRSLGEKIGIEKISQKNRTI 1053
>gi|452991353|emb|CCQ97341.1| Transcription-repair-coupling factor [Clostridium ultunense Esp]
Length = 1180
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 219/553 (39%), Positives = 347/553 (62%), Gaps = 9/553 (1%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQ 85
+P+ ++KLS + W R K + K A++ M DL+ELY R K + K+ ++F
Sbjct: 574 KPK-VNKLS-SLEWSRTKQRAKKAVEDMAKDLLELYAKRESLKGFSFSKDTVWQSQFEDL 631
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
FPYE T Q K+ D++RD+ E+ PMDRL+CGDVG+GKTEVALRA F + GKQ L
Sbjct: 632 FPYEETEGQIKSIEDIKRDM-EKGKPMDRLLCGDVGYGKTEVALRAAFKAIMDGKQVAFL 690
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA+QH++ + ERFS +P IK +LSRF++ E+++ +D I+ G ++I+VGTH LL
Sbjct: 691 VPTTILAQQHYNTIMERFSTFP-IKAAMLSRFRTVKEQKDTIDGIRKGTIDIVVGTHRLL 749
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
V++ +LGLL+VDEEQRFGVK KE + K +VDVLTL+ATPIPRTL+++L G RD S
Sbjct: 750 SKDVIFKDLGLLIVDEEQRFGVKHKETLKKLKENVDVLTLTATPIPRTLHMSLIGIRDMS 809
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I PP ER P++T++ F+++ + AI E++RGGQV++V R++ +++ L++ P
Sbjct: 810 VIDEPPEERYPVQTYVVEFNEQMIREAILKEMERGGQVYFVYNRVETIDKMAVQLKKLVP 869
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
I + HGQ R+LE+ M F +L+CT I+E+GLDI N NTII+ D + GL+
Sbjct: 870 EASITVGHGQMSERELEKVMMDFISNEYHVLVCTTIIETGLDIPNVNTIIIYDADKMGLS 929
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
QLYQL+GRVGR +K A+AY Y +L++ A +RL A+++ E G G+++A +D+ IRG
Sbjct: 930 QLYQLKGRVGRTNKVAYAYFTYEKNKVLTEVAEKRLRAIKDFTEFGSGYKIAMRDLEIRG 989
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYI 505
G + G +Q G + +G DL+ + L +++ K+ + ID+ I+ + S+YI
Sbjct: 990 AGNLLGVEQHGHIEAIGYDLYVKFLNQTIKKIKGEDFEEIV--DTTIDLAIDGYISSKYI 1047
Query: 506 NHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
E +E+ + +++ + + + L ++G P + L+ Y++ A+ I
Sbjct: 1048 EDEEQKIEIYKKIAAIVDEEDYN--ELLDELIDRFGDIPKEVNNLMDISYIKNNASLYHI 1105
Query: 566 TKIYASGKMVGMK 578
I S ++ ++
Sbjct: 1106 KNISQSENIITLE 1118
>gi|134297990|ref|YP_001111486.1| transcription-repair coupling factor [Desulfotomaculum reducens MI-1]
gi|134050690|gb|ABO48661.1| transcription-repair coupling factor [Desulfotomaculum reducens MI-1]
Length = 1169
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 230/549 (41%), Positives = 338/549 (61%), Gaps = 9/549 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEF 82
E+ P+ LS+L T W + K K + A++ M +L+ LY R + + K+ P AEF
Sbjct: 562 ESDHPK-LSRLGGTE-WSKAKAKVREAVKDMADELLALYASRQTVRGHAFSKDMPWQAEF 619
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
A FPYE TPDQ +A +V++D+ E+ PMDRL+CGDVG+GKTEVALRA F V KQ
Sbjct: 620 EALFPYEETPDQLRAIGEVKQDM-EKVRPMDRLLCGDVGYGKTEVALRAAFKAVMDNKQV 678
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
VL PT +LA+QH++ ERF+ YP I++ +LSRF++ E+ + L + G ++I+VGTH
Sbjct: 679 AVLVPTTILAQQHYNTFRERFANYP-IRIEMLSRFRTAKEQRQVLAGLATGEVDIVVGTH 737
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
L+ + +V+ +LGLLVVDEEQRFGV KE++ + +VDVLTLSATPIPRTL+++L G R
Sbjct: 738 RLVQNDIVFKDLGLLVVDEEQRFGVSHKERLKQIRKNVDVLTLSATPIPRTLHMSLVGVR 797
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D SL+ TPP ER P++T++ + AIK EL+RGGQV++V R+ L+ +LQ
Sbjct: 798 DTSLLETPPEERFPVQTYVLEEDPVLIREAIKRELNRGGQVYFVHNRVMDLDRLAGWLQN 857
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P I +AHGQ +LE+ M +F G +L+CT IVE+GLDI N NT+IV+D F
Sbjct: 858 LVPEARIGMAHGQMKEDELEQIMIEFMDGEYDVLVCTTIVETGLDISNVNTLIVKDADHF 917
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY + +L++ + RL+A+ E E G G+++A +D+
Sbjct: 918 GLSQLYQLRGRVGRTNRLAYAYFLFRRDKVLTEISERRLSAIREFTEFGSGYKIAMRDLE 977
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G I G QQ G + VG DL+ +L E++ + ++I + +P
Sbjct: 978 IRGAGNILGAQQHGHIAEVGFDLYCRLLEEAVQEA--RGEKVEEVVETSVEIPVEAYVPD 1035
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
Y+ +E+ AA +D+ + E L +YG P S+ LL+ ++ M
Sbjct: 1036 TYVPDGNQKVELYRRL--AAMRDLVEISDLEEELVDRYGDLPESVRCLLQVTKLKIMGRG 1093
Query: 563 IGITKIYAS 571
+ + I S
Sbjct: 1094 LKVKSISRS 1102
>gi|406668956|ref|ZP_11076245.1| transcription-repair coupling factor [Facklamia ignava CCUG 37419]
gi|405584853|gb|EKB58719.1| transcription-repair coupling factor [Facklamia ignava CCUG 37419]
Length = 1173
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/549 (40%), Positives = 351/549 (63%), Gaps = 9/549 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAE 81
+E+ P+ L+KL T W++ K + + ++ + +L++LY R +++ + ++ P +
Sbjct: 552 SESTTPK-LNKLG-GTEWKKTKARVQSQVEDIADELIQLYAQREQERGFAFAQDTPEQYK 609
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ ++++D+ E + PMDRL+ GDVG+GKTEVALRAIF V GKQ
Sbjct: 610 FEDDFPYPETEDQLRSIQEIKQDM-ESDRPMDRLLVGDVGYGKTEVALRAIFKAVMDGKQ 668
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT VLA+QH+ + ERF+ +P +VGLLSRF SKA+++E +D +K G ++I+VGT
Sbjct: 669 VAFLVPTTVLAQQHYHTIIERFADWP-FEVGLLSRFVSKAKQQETIDGLKTGAISIVVGT 727
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L VV+N+LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 728 HRILSKDVVFNDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMIGV 787
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD SLI TPP R P++T++ + + SAI+ E+ RGGQVFY+ R+ ++ +Q
Sbjct: 788 RDLSLIETPPNNRYPVQTYVMERNNGVIKSAIEREMARGGQVFYLYNRVASIDRKAQEIQ 847
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +AI+HGQ QLE + F +G +L+ T I+E+G+DI NANT+ V D +
Sbjct: 848 DLVPEARVAISHGQMSEAQLENVLLDFIEGVYDVLVTTTIIETGIDIPNANTLFVDDADR 907
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR + A+AYLFY LS+ + +RL A+ E ELG GF+LA +D+
Sbjct: 908 MGLSTLYQLRGRVGRTHRLAYAYLFYEPFKQLSEISEKRLNAIREFTELGSGFKLAMRDL 967
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV--DEHCVISVPYKSVQIDININPR 499
IRG G + G+QQ+G + +VG +L+ +ML +++ + ++ P ++ ++
Sbjct: 968 SIRGAGNLLGQQQSGFIDSVGYELYTQMLQQAIKRKRGGSSQLVDRPTSTLDWQFEMDAY 1027
Query: 500 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 559
+PS+YI+ + + ++ Q+ + +Q + L +YG+ P + L+ ++
Sbjct: 1028 IPSDYISDERQKVGIYKLVQRIDSQEAYVQLQ--DELIDRYGEFPDPVSNLVDFALIKYY 1085
Query: 560 AADIGITKI 568
A +IGIT+I
Sbjct: 1086 ALEIGITQI 1094
>gi|42525214|ref|NP_970594.1| transcription-repair coupling factor [Bdellovibrio bacteriovorus
HD100]
gi|39577425|emb|CAE81248.1| transcription-repair coupling factor [Bdellovibrio bacteriovorus
HD100]
Length = 1172
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 339/561 (60%), Gaps = 15/561 (2%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQFPYEPTPDQKK 96
TAWE+ K K K ++ + DL+ LY R + RP + K + F FPYE T DQ +
Sbjct: 582 TAWEKTKAKVKSHVRDIAADLLTLYAKRAEMHRPAFVIKEDEVLMFENGFPYEETDDQLR 641
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A D+ +DL + PMDRL+CGDVGFGKTEVA+RA F + A KQ VLAPT VL QHF
Sbjct: 642 AINDIRKDLKSTK-PMDRLVCGDVGFGKTEVAMRAAFFAIQARKQVAVLAPTTVLTFQHF 700
Query: 157 DVVSERFSKYP-DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
+ +RF +P DI+V L+RF + AE ++ L +K G +++IVGTH LLGS + Y +LG
Sbjct: 701 ETFKKRFEGWPVDIRV--LNRFVTPAEVKKTLQDLKDGKVDLIVGTHKLLGSSIAYKDLG 758
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL++DEEQ+FGV KEKI K SVD LTLSATPIPRTL +AL G RD SLI+T P +RL
Sbjct: 759 LLIIDEEQKFGVTHKEKIKKIKTSVDTLTLSATPIPRTLNMALVGIRDLSLINTAPVDRL 818
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P +T ++ F E + AI E+ RGGQV+++ RI+ + +D ++Q P I +AHGQ
Sbjct: 819 PTRTFVTKFDPETIRKAITAEISRGGQVYFIHNRIESIYGLVDEIRQIVPEARIRVAHGQ 878
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
+LE+ M F I +L+CT IVESG+D+ ANT+ + FGL+QLYQLRGRVG
Sbjct: 879 MEEHELEKAMLAFFHHEIDVLVCTAIVESGMDVPRANTMFIDTAHLFGLSQLYQLRGRVG 938
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+ A+ YL P L + ERL ++E LG G ++A+ D+ +RG G I GE+Q+
Sbjct: 939 RSKTRAYCYLMMPRNHKLDKEQQERLKIIQENTALGSGIKIAQYDLELRGSGNILGEEQS 998
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMV 515
G V +VG +++ ++L E+L++ V + ++++ I +P YI + +
Sbjct: 999 GHVNSVGYEMYMDLLNEALAEAKGESVEDMDLDP-ELNLKIPALIPDAYIKDIRIRLGYY 1057
Query: 516 NE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM 574
A+ + +D L + E LR Q+G P L+ + +RR ++G+ I A K
Sbjct: 1058 KALADITSNED---LDRIEEELRDQFGPIPEQTVNLMGLMLIRRQCKELGVRDISAGLKS 1114
Query: 575 VGM----KTNMN-KKVFKMMI 590
+ + KT ++ +KV ++ I
Sbjct: 1115 ISLIFTEKTKLSPEKVIQLAI 1135
>gi|373251530|ref|ZP_09539648.1| transcription-repair coupling factor [Nesterenkonia sp. F]
Length = 1204
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 235/621 (37%), Positives = 361/621 (58%), Gaps = 33/621 (5%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPY 88
+LSK+ + W + K K + A++++ +L+ LY R+ + + P P AE FP+
Sbjct: 593 SLSKMGGSD-WAQTKKKARKAVREIAGELIRLYAARMASRGHAFAPDTPWQAELEDAFPH 651
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
TPDQ DV+RD+ ERE PMDRLI GDVG+GKTE+A+RA F V GKQ +L PT
Sbjct: 652 PETPDQLTTIDDVKRDM-EREIPMDRLISGDVGYGKTEIAVRAAFKAVQDGKQVSLLVPT 710
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
+LA QH++ +ERF+ +P + V LSRFQ+ E E LD + G +++++GTH LL S
Sbjct: 711 TLLASQHYETFTERFAGFP-VTVRALSRFQTAKESREVLDGVHSGEIDVVIGTHRLLSSE 769
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
V + +LGL+++DEEQRFGV+ KE + + +VDVL +SATPIPRTL +++ G R+ S ++
Sbjct: 770 VKFKDLGLVIIDEEQRFGVEHKEALKKLRTNVDVLAMSATPIPRTLEMSMAGIRETSTLA 829
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
TPP ER P+ T++ F+ ++V +AI+ EL R GQVF+V R+ +EE +++ P
Sbjct: 830 TPPEERHPVLTYVGPFTDKQVSAAIRRELMREGQVFFVHNRVSSIEETAAKVRELVPEAR 889
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+ +AHGQ +LE+ ++ F + +L+ T I+E+GLDI NANT+IV +GL+QL+
Sbjct: 890 VEVAHGQMSESRLEQIIQDFWEKRFDVLVSTTIIETGLDISNANTLIVDRASTYGLSQLH 949
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
QLRGRVGR+ + A+AY YP + L + ALERL A+ ELG G QLA KD+ IRG G
Sbjct: 950 QLRGRVGRSRERAYAYFLYPAEKPLGEVALERLKAVAANNELGAGLQLAMKDLEIRGAGN 1009
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHL 508
+ G +Q+G + VG DL+ ++ E+++ D V+I++ ++ LP +Y
Sbjct: 1010 LLGGEQSGHIAGVGFDLYLRLVGEAVA--DYRGEAEERTTEVKIELPVDAHLPEDYAPGE 1067
Query: 509 ENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+E + AA+ D + + R +YG+ P ++ L++ +R A IGI I
Sbjct: 1068 RLRLEGYRKL-AAADTD-EAIEEVVTEWRDRYGEPPQAVANLVEVARLRNRARAIGIDDI 1125
Query: 569 YASGKMVGMK-TNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLL------------ 615
GK + + +M +D M + G QIK+ L
Sbjct: 1126 GTQGKFIRFAPVEELPESRQMRLDRM----------YPGSQIKSSLKAVLIPKPTTGGIS 1175
Query: 616 --ELPREQLLNWIFQCLAELY 634
EL +LL+W+ Q L ++
Sbjct: 1176 GRELADAELLSWLDQVLTAIF 1196
>gi|261403915|ref|YP_003240156.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10]
gi|261280378|gb|ACX62349.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10]
Length = 1175
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 228/560 (40%), Positives = 344/560 (61%), Gaps = 15/560 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAI 79
+E K P+ + KL W R K K + ++Q + DL++LY R Q P Y
Sbjct: 547 SEDKEPK-VYKLG-GNEWTRVKNKVRSSVQDIADDLIKLYAER--QSAPGYGFEKDTSEQ 602
Query: 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 139
EF FPY+ TPDQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F G
Sbjct: 603 QEFEDMFPYDETPDQLRAITEIKKDM-EQNRPMDRLLCGDVGYGKTEVAVRAAFKAAIEG 661
Query: 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 199
KQ VL PT +LA+QH++ ERF+ YP I + +LSRF+S+ E+ E + +K G ++I++
Sbjct: 662 KQVAVLVPTTILAQQHYETFRERFANYP-INIQVLSRFRSRKEQNETIKKVKQGSVDILI 720
Query: 200 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 259
GTH LL +V+ +LGLL+VDEEQRFGV KEK+ K ++DVLTL+ATPIPRTL++++
Sbjct: 721 GTHRLLSQDIVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNIDVLTLTATPIPRTLHMSML 780
Query: 260 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 319
G RD S+I TPP R P++T++ S+ V AI+ EL RGGQV+Y+ R++G++E
Sbjct: 781 GVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIERELARGGQVYYLYNRVQGIQEMAAQ 840
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
+ P + + HGQ +LE+T+ F G +L+ T+I+E+G+DI N NT+IV D
Sbjct: 841 ISMLVPEARVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA 900
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 439
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E ELG GF++A +
Sbjct: 901 DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR 960
Query: 440 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK--SVQIDIN 495
D+ IRG G + G +Q G + +VG DL+ +ML E + KV S+P K + ID+
Sbjct: 961 DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKVSMLGEPSLPSKDWNTSIDLG 1020
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
I+ LPS+YI +E+ + + D + + L ++G+ P ++ LL
Sbjct: 1021 IDAYLPSDYIYDSIQKIEIYKKVAVVSSIDESA--ELEDELLDRFGELPLAVSNLLAVSR 1078
Query: 556 VRRMAADIGITKIYASGKMV 575
++ GI I G V
Sbjct: 1079 LKVYGRTYGIDSITQRGDDV 1098
>gi|163753497|ref|ZP_02160621.1| transcription-repair coupling factor [Kordia algicida OT-1]
gi|161327229|gb|EDP98554.1| transcription-repair coupling factor [Kordia algicida OT-1]
Length = 1095
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 232/571 (40%), Positives = 340/571 (59%), Gaps = 21/571 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
F + K P+ + KL + AW++ K K K ++ + +L+ELY R QK Y P
Sbjct: 468 FNGKDGKAPK-IYKLG-SGAWKKLKQKTKARVKHIAYNLIELYAKRRMQKGIQYGPDTHL 525
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ KA DV+ D+ E E PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 526 QHELEASFIYEDTPDQSKATQDVKADM-ESERPMDRLVCGDVGFGKTEVAIRAAFKAVDN 584
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +L PT +LA QHF SER + P I + L+RF+S ++ E L ++ G ++I+
Sbjct: 585 GKQVAILVPTTILAFQHFKTFSERLKEMP-ITIDYLNRFRSTKQRNEVLKGLEDGSVDIV 643
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH L+ V + +LGLL+VDEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L
Sbjct: 644 IGTHQLVNKAVKFKDLGLLIVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSL 703
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
RD S+I+TPPP R PI+TH+ F +E + A+ YE+ RGGQVF++ RI+ ++E
Sbjct: 704 MAARDLSVITTPPPNRYPIETHVIRFQEETIRDAVSYEIQRGGQVFFIHNRIENIKEVAG 763
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+Q+ P I I HGQ ++LE+ M F G +L+ T I+ESGLD+ NANTI + +
Sbjct: 764 MIQRLVPDAKIGIGHGQMEGKKLEKLMLAFMNGEFDVLVSTTIIESGLDVPNANTIFINN 823
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
FGL+ L+Q+RGRVGR++K+A Y P S+++ A +R+ AL + LG GF +A
Sbjct: 824 ANNFGLSDLHQMRGRVGRSNKKAFCYFITPPDSVMTQDARKRINALVQFSTLGSGFNIAM 883
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVI-----------SVPY 487
KD+ IRG G + G +Q+G + +G D + ++L E++ ++ E+ V
Sbjct: 884 KDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNETIEELKENEFKELYEEQESKKEKVFL 943
Query: 488 KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYS 546
K QID + P YIN + + + N+ +E E+D L + L ++G P
Sbjct: 944 KETQIDTDFELLFPDAYINTVSERLVLYNKLSELKTEED---LQTYENELVDRFGPLPEP 1000
Query: 547 MEILLKKLYVRRMAADIGITK-IYASGKMVG 576
LL + ++ +A +G+ K I GK+VG
Sbjct: 1001 AVDLLDSVRIKWLATKLGLEKIIMKKGKLVG 1031
>gi|418950486|ref|ZP_13502659.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-160]
gi|375376908|gb|EHS80411.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-160]
Length = 1168
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|315660330|ref|ZP_07913183.1| transcription-repair coupling factor [Staphylococcus lugdunensis
M23590]
gi|315494619|gb|EFU82961.1| transcription-repair coupling factor [Staphylococcus lugdunensis
M23590]
Length = 1173
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 353/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E K P+ L+KL + W++ K K + +++ + +L+ LY R + ++ A
Sbjct: 551 YVASEDKSPK-LNKLG-GSEWKKTKAKVQQSVEDIAEELIALYKEREMSVGYQFGEDTAE 608
Query: 80 AE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ E + PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QQAFELDFPYELTPDQAKSIEEIKADM-ELQKPMDRLLCGDVGYGKTEVAIRAAFKAVME 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E + + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLVSRFRTAKEVRKTKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLSKDIRYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA+AHGQ R LEETM F G IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPEASIAVAHGQMTERDLEETMLSFINGDYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ + V++ +N++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGITEETPDTPEVEMVLNLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K + L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQNEQAKIEIYKKLRKVENE--AQLDDIRDELMDRFNDYPIEVERLLDSVQIKI 1084
Query: 559 MAADIGITKIYASGKMVGM 577
A G+T I GK V +
Sbjct: 1085 HALRAGVTLIKDQGKTVDI 1103
>gi|169825685|ref|YP_001695843.1| transcription-repair coupling factor [Lysinibacillus sphaericus
C3-41]
gi|168990173|gb|ACA37713.1| Transcription-repair coupling factor [Lysinibacillus sphaericus
C3-41]
Length = 1169
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/557 (40%), Positives = 343/557 (61%), Gaps = 8/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
+ +E + P+ L KL W++ K K A+Q + DL++LY R +K + P N
Sbjct: 552 YVASEDREPK-LHKLG-GAEWKKAKAKVSSAVQDIADDLIKLYAKREAEKGHAFTPDNDD 609
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F A F YE T DQ ++ ++V+RD+ ERE PMDRL+CGDVG+GKTEVA+RA F +
Sbjct: 610 QRNFEAMFAYEETEDQLRSIVEVKRDM-ERERPMDRLVCGDVGYGKTEVAIRAAFKAIQD 668
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ERF + I VGLLSRF+SK E+ L +K G ++I+
Sbjct: 669 GKQVAFLVPTTILAQQHYETIRERFQDFA-INVGLLSRFRSKKEQTATLKGLKEGQVDIV 727
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +L +++ +LGLL+VDEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++
Sbjct: 728 IGTHRILSKDLIFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSM 787
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ S V AI+ E+ RGGQVFY+ R++ + ++
Sbjct: 788 VGVRDLSVIETPPANRFPVQTYVMEHSGALVREAIEREMARGGQVFYLYNRVEDMARKVE 847
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+Q P I AHG+ +LE + F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 848 EIQVLVPEARIGHAHGKMSETELESVILSFLEGDYDVLVTTTIIETGVDIPNVNTLIVHD 907
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+ GLAQLYQLRGRVGR+++ A+AY Y +L+D A +RL A++E ELG GF++A
Sbjct: 908 ADRMGLAQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELGSGFKIAM 967
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG DL+ +ML E++++ + V ++I ++++
Sbjct: 968 RDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLQEAIAE-RQTGVKKEEKPEIEILLSVDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P YI ++M KA +Q + + E L ++G P E LL+ ++
Sbjct: 1027 YIPDVYIPDGYQKIQMYKRI-KAMDQ-VEEYGEIMEELEDRFGDLPIETERLLRVARMKV 1084
Query: 559 MAADIGITKIYASGKMV 575
G+ + K++
Sbjct: 1085 WGLGAGVISVKEKQKLI 1101
>gi|157690837|ref|YP_001485299.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032]
gi|157679595|gb|ABV60739.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032]
Length = 1177
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/493 (42%), Positives = 324/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + +
Sbjct: 558 SEGKEPK-LYKLGGSD-WKRVKKKVESSVQDIADDLIKLYAEREASKGYAFSPDHEMQRQ 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FESAFPYQETDDQIRSIHEIKQDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QHFD + +RF YP +K+ LSRF+++ E E L +K+G +++++GT
Sbjct: 675 VALLVPTTILAQQHFDTIMDRFQDYP-VKIAQLSRFRTRKETTETLKGLKNGTIDMVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL +VY +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDIVYKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P ++ AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDIPNVNTLIVHDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + ++ +ID+ I+ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGDTTAQDKFEP-EIDLQIDAYIP 1032
Query: 502 SEYINHLENPMEM 514
YI+ + +EM
Sbjct: 1033 DTYISDGKQKIEM 1045
>gi|194018017|ref|ZP_03056624.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061]
gi|194010354|gb|EDW19929.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061]
Length = 1177
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/493 (42%), Positives = 324/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + +
Sbjct: 558 SEGKEPK-LYKLGGSD-WKRVKKKVESSVQDIADDLIKLYAEREASKGYAFSPDHEMQHQ 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FESAFPYQETDDQIRSIHEIKQDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QHFD + +RF YP +K+ LSRF+++ E E L +K+G +++++GT
Sbjct: 675 VALLVPTTILAQQHFDTIMDRFQDYP-VKIAQLSRFRTRKETTETLKGLKNGTIDMVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL +VY +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDIVYKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P ++ AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDIPNVNTLIVHDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + ++ +ID+ I+ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGDTTAQDKFEP-EIDLQIDAYIP 1032
Query: 502 SEYINHLENPMEM 514
YI+ + +EM
Sbjct: 1033 DTYISDGKQKIEM 1045
>gi|381186662|ref|ZP_09894232.1| transcription-repair coupling factor [Flavobacterium frigoris PS1]
gi|379651506|gb|EIA10071.1| transcription-repair coupling factor [Flavobacterium frigoris PS1]
Length = 1102
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 225/562 (40%), Positives = 334/562 (59%), Gaps = 18/562 (3%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQF 86
P + KL + AW+ K K K ++ + +L++LY R K + P + E + F
Sbjct: 478 PPKIYKLG-SNAWKVLKQKTKARVKHVAFNLIQLYAKRRLDKGFQFAPDSYLQNELESSF 536
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
YE TPDQ K+ +V+ D+ E + PMDRL+CGDVGFGKTEVA+RA F V KQ +L
Sbjct: 537 IYEDTPDQTKSTQEVKADM-ESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDNSKQVAILV 595
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA QH+ +ER P + +G L+RF+S +K E L ++ G L+I++GTH L+
Sbjct: 596 PTTILAYQHYRTFTERLKDMP-VSIGYLNRFRSAKQKSETLKLLAEGKLDIVIGTHQLVN 654
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
VV+ +LGLL+VDEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L RD S+
Sbjct: 655 KNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIPRTLQFSLMAARDLSV 714
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPPP R PI+T++ FS+E + AI YE+ R GQVF++ RI+ ++E +Q+ P
Sbjct: 715 ITTPPPNRYPIETNVVGFSEELIRDAISYEIQRNGQVFFINNRIENIKEVAGMIQRLVPN 774
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+ I HGQ ++LEE M F G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 775 ARVGIGHGQMEGKKLEELMLAFMNGEFDVLVATTIIESGLDVPNANTIFINNANNFGLSD 834
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+Q+RGRVGR++K+A Y P S ++D A +R+ ALE+ ELG GF +A KD+ IRG
Sbjct: 835 LHQMRGRVGRSNKKAFCYFICPPYSAMTDDARKRIQALEQFSELGSGFNIAMKDLEIRGA 894
Query: 447 GTIFGEQQTGDVGNVGVDLFFEML-----------FESLSKVDEHCVISVPYKSVQIDIN 495
G + G +Q+G + +G D + ++L F+ L V+ K +QID +
Sbjct: 895 GDLLGGEQSGFINEIGFDTYQKILNEAIDELKENEFKDLYPVENDLETKEYVKDLQIDTD 954
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
EYIN++ + + NE +D L Q + L ++G P L+ +
Sbjct: 955 FELLFSDEYINNVSERLSLYNELGAVKNEDELQLFQ--KKLIDRFGPMPPRAIALMNSIR 1012
Query: 556 VRRMAADIGITK-IYASGKMVG 576
++ +A+ +GI K + GKMVG
Sbjct: 1013 IKWVASRVGIEKLVMKQGKMVG 1034
>gi|383451801|ref|YP_005358522.1| transcription-repair coupling factor [Flavobacterium indicum
GPTSA100-9]
gi|380503423|emb|CCG54465.1| Transcription-repair coupling factor [Flavobacterium indicum
GPTSA100-9]
Length = 1117
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/565 (39%), Positives = 343/565 (60%), Gaps = 24/565 (4%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQF 86
P + KL + AW+ K K K ++ + +L++LY R K + P E + F
Sbjct: 498 PPKIYKLG-SNAWKALKQKTKARVKHIAFNLIQLYAKRRLDKGYAFGPDTYMQKELESSF 556
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
YE TPDQ KA DV+ D+ E + PMDRL+CGDVGFGKTEVA+RA F V GKQ +L
Sbjct: 557 IYEDTPDQVKATHDVKMDM-ESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAILV 615
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA QH+ SER P + V L+RF++ +K E L ++ G ++I++GTH L+
Sbjct: 616 PTTILAYQHYRTFSERLKDLP-VTVSYLNRFRTAKQKAETLKGLEEGKIDIVIGTHQLVN 674
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
V + +LGLL++DEEQ+FGV K+K+ + ++D LTL+ATPIPRTL +L RD S+
Sbjct: 675 KNVKFRDLGLLIIDEEQKFGVNVKDKLKTIATNIDTLTLTATPIPRTLQFSLMAARDLSV 734
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPPP R P++T++ F++E + A+ YE++RGGQV+++ RI+ ++E +Q+ P
Sbjct: 735 ITTPPPNRYPVETNVIRFNEEAIRDAVSYEIERGGQVYFINNRIENIKEVAGMIQRLVPN 794
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+ + HGQ ++LEE M F +G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 795 AKVGVGHGQMDGKKLEELMLAFMEGEFDVLVATTIIESGLDVPNANTIFINNANNFGLSD 854
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+Q+RGRVGR++K+A Y P S ++D+A +R+ ALE+ ELG GF +A KD+ IRG
Sbjct: 855 LHQMRGRVGRSNKKAFCYFITPPYSAMTDEARKRIQALEQFSELGSGFNIAMKDLEIRGA 914
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKV----------DEHCVISVPY-KSVQIDIN 495
G + G +Q+G + +G D + +++ E++ ++ +E+ + + Y K +QID +
Sbjct: 915 GDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYEEENDIETKEYIKDIQIDTD 974
Query: 496 INPRLPSEYINHLENPMEMVNE---AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 552
P EYIN++ + + NE + AE D + + L ++G P LL
Sbjct: 975 FELLFPDEYINNITERLNLYNELSTIKSEAELDAY-----EQRLIDRFGPLPKPAIALLN 1029
Query: 553 KLYVRRMAADIGITK-IYASGKMVG 576
+ ++ A +GI K I+ GKM+G
Sbjct: 1030 SVRIKWKATQLGIEKLIFKQGKMIG 1054
>gi|386728259|ref|YP_006194642.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 71193]
gi|418310667|ref|ZP_12922202.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21331]
gi|418980448|ref|ZP_13528229.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus DR10]
gi|365236188|gb|EHM77088.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21331]
gi|379991773|gb|EIA13237.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus DR10]
gi|384229552|gb|AFH68799.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 71193]
Length = 1168
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|387601857|ref|YP_005733378.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ST398]
gi|404477886|ref|YP_006709316.1| transcription-repair coupling factor [Staphylococcus aureus
08BA02176]
gi|283469795|emb|CAQ49006.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ST398]
gi|404439375|gb|AFR72568.1| putative transcription-repair coupling factor [Staphylococcus aureus
08BA02176]
Length = 1168
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|269202123|ref|YP_003281392.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ED98]
gi|296276156|ref|ZP_06858663.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MR1]
gi|262074413|gb|ACY10386.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ED98]
Length = 1168
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|448745283|ref|ZP_21727143.1| transcription-repair coupling factor [Staphylococcus aureus KT/Y21]
gi|445561405|gb|ELY17609.1| transcription-repair coupling factor [Staphylococcus aureus KT/Y21]
Length = 1168
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|363890537|ref|ZP_09317864.1| transcription-repair coupling factor [Eubacteriaceae bacterium CM5]
gi|361964913|gb|EHL17913.1| transcription-repair coupling factor [Eubacteriaceae bacterium CM5]
Length = 1127
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/540 (41%), Positives = 339/540 (62%), Gaps = 7/540 (1%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQFPYEPTPDQK 95
+ W+++K K K A+ ++ L+ELY R QK + K+ EF A FP+E T DQ
Sbjct: 561 SNQWKKQKQKAKKAVDEIAKYLIELYAERENQKGYAFSKDTVWQREFEALFPFEETQDQL 620
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
K+ D++RD+ E PMDRLICGDVG+GKTEVALR IF KQ L PT +LA+QH
Sbjct: 621 KSIKDIKRDM-ENIRPMDRLICGDVGYGKTEVALRGIFKACMDQKQVAFLVPTTILAQQH 679
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
+ +S+RF YP I V +LSRF++K E+E ++ +K+G +++I+GTH LL V + ++G
Sbjct: 680 YKTLSDRFENYP-INVDVLSRFKTKKEQEITIEKVKNGEVDVIIGTHRLLSKDVEFKDIG 738
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
+LV+DEEQRFGVK KEKI K ++DVLTL+ATPIPRTL ++L+G RD S++ PP +R
Sbjct: 739 MLVIDEEQRFGVKHKEKIKQIKSNIDVLTLTATPIPRTLNMSLSGIRDMSVLEEPPNDRY 798
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
PI T+++ + ++ AI+ E+ R GQVF+V ++ +++ +F+Q+ P IAIAHGQ
Sbjct: 799 PIITYVTEAREGIILDAIEREIARNGQVFFVYNSVENIDKMYNFIQKLVPSARIAIAHGQ 858
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
+ LE+ M + + +L+CT I+E+G+DI NANTIIV + + GL+QLYQLRGRVG
Sbjct: 859 MSAIALEDIMMDYLEKKYDVLLCTTIIETGMDISNANTIIVYNADKMGLSQLYQLRGRVG 918
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+ ++A+AYL Y +L++ A +RL A+ E E G GF++A D+ IRG G I GE Q
Sbjct: 919 RSSRQAYAYLMYEKDKVLTEIAQKRLKAIREFTEFGSGFRVAMMDLEIRGSGNILGEVQH 978
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMV 515
G + VG DL+ +ML +S +++ V S ++ +N+N +P YI +E+
Sbjct: 979 GHIEEVGYDLYIKMLNDSFNRLKGKTVEEKV--STEVYLNVNAYIPDNYIEDEIQKIEIY 1036
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 575
+ ++ + +Q + ++ P +E LLK +R + IGI KI + +
Sbjct: 1037 KKIASINSKEDYFDIQ--AEIEDRFSNIPQEVENLLKISSIRSLGEKIGIEKISQKNRTI 1094
>gi|418561460|ref|ZP_13125950.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21262]
gi|371977538|gb|EHO94805.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21262]
Length = 1168
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|417900633|ref|ZP_12544514.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21266]
gi|341847465|gb|EGS88645.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21266]
Length = 1168
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|15923493|ref|NP_371027.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Mu50]
gi|15926180|ref|NP_373713.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus N315]
gi|156978831|ref|YP_001441090.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Mu3]
gi|253315228|ref|ZP_04838441.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|255005296|ref|ZP_05143897.2| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|282895111|ref|ZP_06303331.1| transcription-repair coupling factor [Staphylococcus aureus A8117]
gi|417800581|ref|ZP_12447696.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21318]
gi|417892289|ref|ZP_12536340.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21201]
gi|418429542|ref|ZP_13002476.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS3a]
gi|418567846|ref|ZP_13132209.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21272]
gi|418662415|ref|ZP_13223965.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-122]
gi|418885796|ref|ZP_13439947.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1150]
gi|418914966|ref|ZP_13468935.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|443636492|ref|ZP_21120599.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21236]
gi|81832560|sp|Q7A7B2.1|MFD_STAAN RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|81855990|sp|Q99WA0.1|MFD_STAAM RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|13700393|dbj|BAB41691.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus N315]
gi|14246271|dbj|BAB56665.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Mu50]
gi|156720966|dbj|BAF77383.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Mu3]
gi|282762529|gb|EFC02669.1| transcription-repair coupling factor [Staphylococcus aureus A8117]
gi|334277853|gb|EGL96070.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21318]
gi|341857910|gb|EGS98717.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21201]
gi|371981517|gb|EHO98691.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21272]
gi|375036466|gb|EHS29537.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-122]
gi|377727608|gb|EHT51713.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1150]
gi|377755318|gb|EHT79219.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|387721177|gb|EIK09058.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS3a]
gi|443407668|gb|ELS66213.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21236]
Length = 1168
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|258429620|ref|ZP_05688294.1| transcription-repair-coupling factor [Staphylococcus aureus A9299]
gi|257849679|gb|EEV73646.1| transcription-repair-coupling factor [Staphylococcus aureus A9299]
Length = 1168
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|387779641|ref|YP_005754439.1| putative transcription-repair coupling factor [Staphylococcus aureus
subsp. aureus LGA251]
gi|344176743|emb|CCC87205.1| putative transcription-repair coupling factor [Staphylococcus aureus
subsp. aureus LGA251]
Length = 1168
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|21282187|ref|NP_645275.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MW2]
gi|49485367|ref|YP_042588.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MSSA476]
gi|297207394|ref|ZP_06923833.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300910353|ref|ZP_07127806.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus TCH70]
gi|418988923|ref|ZP_13536593.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1835]
gi|448741241|ref|ZP_21723209.1| transcription-repair coupling factor [Staphylococcus aureus
KT/314250]
gi|81827911|sp|Q6GBY5.1|MFD_STAAS RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|81847858|sp|Q8NXZ6.1|MFD_STAAW RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|21203623|dbj|BAB94323.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MW2]
gi|49243810|emb|CAG42235.1| putative transcription-repair coupling factor [Staphylococcus aureus
subsp. aureus MSSA476]
gi|296887957|gb|EFH26851.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300888342|gb|EFK83529.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus TCH70]
gi|377716817|gb|EHT40997.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1835]
gi|445548033|gb|ELY16291.1| transcription-repair coupling factor [Staphylococcus aureus
KT/314250]
Length = 1168
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|418658062|ref|ZP_13219807.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-111]
gi|375039367|gb|EHS32297.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-111]
Length = 1168
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|87160796|ref|YP_493190.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88194263|ref|YP_499055.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|161508743|ref|YP_001574402.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253735238|ref|ZP_04869403.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus TCH130]
gi|258452816|ref|ZP_05700811.1| transcription-repair coupling factor [Staphylococcus aureus A5948]
gi|262049988|ref|ZP_06022847.1| transcription-repair coupling factor [Staphylococcus aureus D30]
gi|282925578|ref|ZP_06333231.1| transcription-repair coupling factor [Staphylococcus aureus A9765]
gi|284023512|ref|ZP_06377910.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 132]
gi|294850363|ref|ZP_06791096.1| transcription-repair coupling factor [Staphylococcus aureus A9754]
gi|379013784|ref|YP_005290020.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus VC40]
gi|385780768|ref|YP_005756939.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 11819-97]
gi|415689615|ref|ZP_11452874.1| transcription-repair coupling factor helicase [Staphylococcus aureus
subsp. aureus CGS01]
gi|417648727|ref|ZP_12298546.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21189]
gi|417899059|ref|ZP_12542970.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21259]
gi|418284537|ref|ZP_12897255.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21209]
gi|418316058|ref|ZP_12927504.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21340]
gi|418318408|ref|ZP_12929811.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21232]
gi|418573289|ref|ZP_13137488.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21333]
gi|418580102|ref|ZP_13144191.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1114]
gi|418599415|ref|ZP_13162900.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21343]
gi|418642091|ref|ZP_13204291.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-24]
gi|418648486|ref|ZP_13210529.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-88]
gi|418651212|ref|ZP_13213221.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-91]
gi|418902762|ref|ZP_13456804.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1770]
gi|418907112|ref|ZP_13461132.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|418911170|ref|ZP_13465154.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG547]
gi|418924727|ref|ZP_13478631.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG2018]
gi|418927816|ref|ZP_13481703.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1612]
gi|419774449|ref|ZP_14300416.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CO-23]
gi|421150865|ref|ZP_15610517.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|422742502|ref|ZP_16796506.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MRSA177]
gi|422747255|ref|ZP_16801173.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MRSA131]
gi|440736500|ref|ZP_20916099.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443638618|ref|ZP_21122656.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21196]
gi|123098062|sp|Q2G0R8.1|MFD_STAA8 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|123722412|sp|Q2FJD8.1|MFD_STAA3 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|87126770|gb|ABD21284.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87201821|gb|ABD29631.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|160367552|gb|ABX28523.1| transcription-repair coupling factor helicase [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|253726798|gb|EES95527.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus TCH130]
gi|257859502|gb|EEV82355.1| transcription-repair coupling factor [Staphylococcus aureus A5948]
gi|259161923|gb|EEW46506.1| transcription-repair coupling factor [Staphylococcus aureus D30]
gi|282592482|gb|EFB97494.1| transcription-repair coupling factor [Staphylococcus aureus A9765]
gi|294822787|gb|EFG39223.1| transcription-repair coupling factor [Staphylococcus aureus A9754]
gi|315196186|gb|EFU26542.1| transcription-repair coupling factor helicase [Staphylococcus aureus
subsp. aureus CGS01]
gi|320139410|gb|EFW31288.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320144187|gb|EFW35955.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329729764|gb|EGG66161.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21189]
gi|341846797|gb|EGS87987.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21259]
gi|364521757|gb|AEW64507.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 11819-97]
gi|365173197|gb|EHM63781.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21209]
gi|365242028|gb|EHM82756.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21340]
gi|365243025|gb|EHM83717.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21232]
gi|371982612|gb|EHO99762.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21333]
gi|374362481|gb|AEZ36586.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus VC40]
gi|374396944|gb|EHQ68163.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21343]
gi|375017622|gb|EHS11230.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-24]
gi|375026111|gb|EHS19499.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-88]
gi|375026222|gb|EHS19606.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-91]
gi|377693072|gb|EHT17448.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1114]
gi|377725361|gb|EHT49475.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG547]
gi|377739144|gb|EHT63151.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1612]
gi|377743399|gb|EHT67381.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1770]
gi|377747029|gb|EHT70997.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG2018]
gi|377761344|gb|EHT85218.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|383971725|gb|EID87790.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CO-23]
gi|394329085|gb|EJE55208.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|436429600|gb|ELP26966.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443408939|gb|ELS67447.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21196]
Length = 1168
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|418644621|ref|ZP_13206762.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-55]
gi|375025140|gb|EHS18548.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-55]
Length = 1168
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|386830146|ref|YP_006236800.1| putative transcription-repair coupling factor [Staphylococcus aureus
subsp. aureus HO 5096 0412]
gi|417798431|ref|ZP_12445598.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21310]
gi|418657223|ref|ZP_13218999.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-105]
gi|334275950|gb|EGL94223.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21310]
gi|375031226|gb|EHS24513.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-105]
gi|385195538|emb|CCG15147.1| putative transcription-repair coupling factor [Staphylococcus aureus
subsp. aureus HO 5096 0412]
Length = 1168
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|49482730|ref|YP_039954.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MRSA252]
gi|295427037|ref|ZP_06819674.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|418581174|ref|ZP_13145258.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1605]
gi|418891068|ref|ZP_13445187.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1176]
gi|418896885|ref|ZP_13450959.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|418901567|ref|ZP_13455617.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1214]
gi|418908253|ref|ZP_13462262.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG149]
gi|418917794|ref|ZP_13471751.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1267]
gi|418922132|ref|ZP_13476050.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1233]
gi|418982902|ref|ZP_13530608.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1242]
gi|418985000|ref|ZP_13532691.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1500]
gi|81828081|sp|Q6GJG8.1|MFD_STAAR RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|49240859|emb|CAG39526.1| putative transcription-repair coupling factor [Staphylococcus aureus
subsp. aureus MRSA252]
gi|295129040|gb|EFG58669.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|377700659|gb|EHT24994.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1214]
gi|377703412|gb|EHT27727.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1242]
gi|377708214|gb|EHT32504.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1500]
gi|377712218|gb|EHT36439.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1605]
gi|377733142|gb|EHT57188.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1176]
gi|377736312|gb|EHT60338.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1233]
gi|377749429|gb|EHT73378.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1267]
gi|377757054|gb|EHT80949.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG149]
gi|377762372|gb|EHT86237.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC341D]
Length = 1168
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|417797763|ref|ZP_12444955.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21305]
gi|334266234|gb|EGL84717.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21305]
Length = 1168
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|418312101|ref|ZP_12923612.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21334]
gi|365238776|gb|EHM79605.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21334]
Length = 1172
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|258424461|ref|ZP_05687340.1| transcription-repair coupling factor [Staphylococcus aureus A9635]
gi|417891608|ref|ZP_12535669.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21200]
gi|418281815|ref|ZP_12894614.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21202]
gi|418307986|ref|ZP_12919656.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21194]
gi|418888402|ref|ZP_13442540.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1524]
gi|418993215|ref|ZP_13540855.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG290]
gi|257845330|gb|EEV69365.1| transcription-repair coupling factor [Staphylococcus aureus A9635]
gi|341851835|gb|EGS92742.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21200]
gi|365172195|gb|EHM62923.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21202]
gi|365242702|gb|EHM83403.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21194]
gi|377747275|gb|EHT71240.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG290]
gi|377755246|gb|EHT79149.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1524]
Length = 1168
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|257424615|ref|ZP_05601043.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257427281|ref|ZP_05603682.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257429918|ref|ZP_05606304.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus 68-397]
gi|257435524|ref|ZP_05611574.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M876]
gi|282903089|ref|ZP_06310981.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus C160]
gi|282904878|ref|ZP_06312738.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282907825|ref|ZP_06315663.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282910141|ref|ZP_06317947.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282913331|ref|ZP_06321122.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M899]
gi|282918284|ref|ZP_06326024.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus C427]
gi|282923035|ref|ZP_06330721.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus C101]
gi|283957293|ref|ZP_06374751.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus A017934/97]
gi|293500380|ref|ZP_06666232.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 58-424]
gi|293509318|ref|ZP_06668034.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M809]
gi|293515907|ref|ZP_06670597.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M1015]
gi|297591586|ref|ZP_06950223.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MN8]
gi|384865902|ref|YP_005746098.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus TCH60]
gi|417888539|ref|ZP_12532647.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21195]
gi|418565540|ref|ZP_13129940.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21264]
gi|418596758|ref|ZP_13160310.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21342]
gi|418601103|ref|ZP_13164546.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21345]
gi|257272642|gb|EEV04762.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257275932|gb|EEV07400.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257279434|gb|EEV10029.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus 68-397]
gi|257285161|gb|EEV15278.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M876]
gi|282314554|gb|EFB44941.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus C101]
gi|282317850|gb|EFB48219.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus C427]
gi|282322802|gb|EFB53122.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M899]
gi|282325989|gb|EFB56295.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282328301|gb|EFB58576.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282331995|gb|EFB61504.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282596515|gb|EFC01475.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus C160]
gi|283791217|gb|EFC30027.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus A017934/97]
gi|290921315|gb|EFD98373.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M1015]
gi|291096340|gb|EFE26600.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 58-424]
gi|291467863|gb|EFF10373.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M809]
gi|297575455|gb|EFH94172.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MN8]
gi|312436407|gb|ADQ75478.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus TCH60]
gi|341855034|gb|EGS95892.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21195]
gi|371973192|gb|EHO90551.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21264]
gi|374396698|gb|EHQ67925.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21342]
gi|374399848|gb|EHQ70981.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21345]
Length = 1168
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|56961865|ref|YP_173587.1| transcription-repair coupling factor [Bacillus clausii KSM-K16]
gi|56908099|dbj|BAD62626.1| transcription-repair coupling factor [Bacillus clausii KSM-K16]
Length = 1180
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/599 (37%), Positives = 366/599 (61%), Gaps = 10/599 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAF 98
W++ K K + +++ + DL++LY R + + P AEF + FPY+ T DQ +A
Sbjct: 574 WKKVKKKVQTSVEDIADDLIKLYAEREASVGHRFSSDGPEQAEFESSFPYQETEDQLRAI 633
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E++ PMDRL+CGDVG+GKTEVA+RA F + GKQ +L PT +LA+QHF+
Sbjct: 634 KEIKEDM-EKQRPMDRLLCGDVGYGKTEVAIRAAFKAIMDGKQVAILVPTTILAQQHFET 692
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+S+RFS +P I VG+LSRF+S+ E+ E L +K G ++++VGTH LL V + +LGLL+
Sbjct: 693 ISDRFSDFP-ITVGVLSRFRSRKEQTEVLKGLKAGSVDLVVGTHRLLSKDVQFRDLGLLI 751
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
VDEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 752 VDEEQRFGVTHKEKIKRMKANIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 811
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ F+ V AI+ EL RGGQV+ + R++ +E + + P ++ AHGQ
Sbjct: 812 TYVVEFNPAIVREAIERELSRGGQVYVLYNRVEDIERMTEQISTLVPDARVSYAHGQMNE 871
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
R+LE + F +G +L+ T I+E+G+DI N NT+IV + + GL+QLYQ+RGRVGR++
Sbjct: 872 RELESIILDFLEGESDVLVTTTIIETGVDIPNVNTLIVCNADKMGLSQLYQIRGRVGRSN 931
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A++Y Y +L++ A +RL A++E ELG GF++A +D+ IRG G + G QQ G +
Sbjct: 932 RVAYSYFTYQPDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNLLGSQQHGFI 991
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML E++ + P+K+ ++++NI+ +P YI + +EM
Sbjct: 992 DSVGFDLYSQMLKEAIEERKGEKPKEPPFKA-ELNVNIDAYIPERYIPDAKQKIEMYKRF 1050
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGM- 577
+ + + + + L ++G+ P + L + ++ +A + KI V +
Sbjct: 1051 KGV--ETLEEIADLQDELVDRFGEYPKQVAYLFEMTKIKLIADQEKVEKITEGKDAVTIL 1108
Query: 578 --KTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL-LLELPREQLLNWIFQCLAEL 633
+ N+ ++D+ S+ +G+QIK + +L E LL +I + L L
Sbjct: 1109 LTEETTNRIHVATLVDAAQKIGRDVSIGSQGNQIKLVIKTKQLSDETLLAYIIELLEAL 1167
>gi|395802774|ref|ZP_10482026.1| transcription-repair coupling factor [Flavobacterium sp. F52]
gi|395435215|gb|EJG01157.1| transcription-repair coupling factor [Flavobacterium sp. F52]
Length = 1121
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/562 (39%), Positives = 342/562 (60%), Gaps = 18/562 (3%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQF 86
P + KL + AW+ K K K ++ + +L++LY R +K + P + E + F
Sbjct: 500 PPKIYKLG-SNAWKVLKQKTKARVKHIAFNLIQLYAKRRLEKGFQFAPDSYLQNELESSF 558
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
YE TPDQ K+ +V+ D+ E + PMDRL+CGDVGFGKTEVA+RA F V KQ VL
Sbjct: 559 IYEDTPDQMKSTAEVKADM-ESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDNSKQVAVLV 617
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA QH+ SER P + +G L+RF++ +K + L + G L+I++GTH L+
Sbjct: 618 PTTILAYQHYRTFSERLKDMP-VSIGYLNRFRTAKQKAQTLKDLAEGKLDIVIGTHQLVN 676
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
VV+ +LGLL+VDEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L RD S+
Sbjct: 677 KNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIPRTLQFSLMAARDLSV 736
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPPP R PI+T++ F++E + AI YE+ R GQVF++ RI+ ++E +Q+ P
Sbjct: 737 ITTPPPNRYPIETNVVGFNEEIIRDAISYEIQRNGQVFFINNRIENIKEVAGMIQRLVPN 796
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+ I HGQ +LEE M F G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 797 ARVGIGHGQMDGAKLEELMLGFMNGDFDVLVATTIIESGLDVPNANTIFINNANNFGLSD 856
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+Q+RGRVGR++K+A Y P S +++ A +R+ ALE+ ELG GF +A KD+ IRG
Sbjct: 857 LHQMRGRVGRSNKKAFCYFICPPYSSMTEDARKRIQALEQFSELGSGFNIAMKDLEIRGA 916
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKV----------DEHCVISVPY-KSVQIDIN 495
G + G +Q+G + +G D + +++ E++ ++ +E+ + + Y K +QID +
Sbjct: 917 GDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKELYPEENDIDTKEYVKDIQIDAD 976
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
P EYIN++ + + NE +A +D L +F + L ++G P LL +
Sbjct: 977 FELLFPDEYINNVSERLVLYNEL--SAIKDEAGLQEFEKKLIDRFGPLPKQAVALLNSIR 1034
Query: 556 VRRMAADIGITK-IYASGKMVG 576
++ +A +GI K + GKM+G
Sbjct: 1035 IKWIATKVGIEKLVLKQGKMIG 1056
>gi|57650044|ref|YP_185435.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus COL]
gi|151220678|ref|YP_001331500.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. Newman]
gi|418571163|ref|ZP_13135406.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21283]
gi|440707769|ref|ZP_20888454.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21282]
gi|81859647|sp|Q5HIH2.1|MFD_STAAC RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|57284230|gb|AAW36324.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus COL]
gi|150373478|dbj|BAF66738.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. Newman]
gi|371981182|gb|EHO98367.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21283]
gi|436505623|gb|ELP41511.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21282]
Length = 1168
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|417903856|ref|ZP_12547690.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21269]
gi|341848904|gb|EGS90060.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21269]
Length = 1168
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|384546782|ref|YP_005736035.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ED133]
gi|298693833|gb|ADI97055.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ED133]
Length = 1168
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|404372897|ref|ZP_10978178.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA]
gi|226914272|gb|EEH99473.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA]
Length = 1169
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 239/615 (38%), Positives = 377/615 (61%), Gaps = 24/615 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K P+ ++KL + W + K K K +I ++ DL++LY R K + K+ +
Sbjct: 561 SEGKTPK-VNKLG-SNEWNKAKAKVKKSINEIAEDLVKLYATRATLKGYKFRKDTEWQKQ 618
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F +FP+E TPDQ + +++ D+ E + PMDRL+CGDVG+GKTEVA+RA F V GKQ
Sbjct: 619 FEDEFPFEETPDQLTSLEEIKHDM-ETDKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQ 677
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH+ +++RFS +P +K+ ++SRF+S E++ L +K G+++I++GT
Sbjct: 678 VAFLVPTTILAEQHYKNMTKRFSDFP-VKIDMISRFRSAKEQKATLQAVKEGNVDILIGT 736
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H L+ +V+ +LGLL++DEEQRFGV QKEKI K +VDVLTLSATPIPRTL+++LTG
Sbjct: 737 HRLVSKDIVFKDLGLLIIDEEQRFGVAQKEKIKGLKKNVDVLTLSATPIPRTLHMSLTGA 796
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP ER PI+T++ + + V AI E++R GQV+YV R++ +E +++
Sbjct: 797 RDISVIETPPEERYPIQTYVVEQNDQLVRDAILREVNRSGQVYYVYNRVESIEGMAKYIR 856
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P + I HGQ RQLE+ M F IL+CT I+E+G+DI N NT+I+ D +
Sbjct: 857 ELVPECKVGIIHGQMTERQLEKEMVSFMNKDYDILVCTTIIETGIDIPNVNTMIIHDSDK 916
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL AL++ ELG GF++A +D+
Sbjct: 917 MGLSQLYQLRGRVGRSNRIAYAYFMYTKDKILTEVAEKRLKALKDFTELGSGFKIAMRDL 976
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G Q G + +G DL+ ML +++ K+ + + P ++ +DI ++ +P
Sbjct: 977 EIRGAGNMMGSAQHGHMAAIGYDLYCRMLEDTI-KIIKGEIEKEPIETT-VDIKVDAYIP 1034
Query: 502 SEYINHLENPMEMVNEAEKAAEQD-IWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
YI E+ ++ + +K A D + M L +Y + P + L+ Y++ A
Sbjct: 1035 GTYI---EDEIQKIEIYKKIAAIDGLEDYMDIKSELEDRYSEIPDPVYNLMDIAYIKSKA 1091
Query: 561 ADIGITKIYASGKMV------GMKTNMNKKVFKMMIDSMTSEV-----HRNSLTFEGDQI 609
I I +I + K V G+K N+N ++K ++++ +V + +I
Sbjct: 1092 KLISIEEIKETPKEVKFIFADGIK-NLN-SIYKYLLENYKDKVFLMFGEKPYFAVRSSEI 1149
Query: 610 KAELLLELPREQLLN 624
K E +L +E L N
Sbjct: 1150 KKETILGFYKEILEN 1164
>gi|148381479|ref|YP_001256020.1| transcription-repair coupling factor [Clostridium botulinum A str.
ATCC 3502]
gi|153934098|ref|YP_001385854.1| transcription-repair coupling factor [Clostridium botulinum A str.
ATCC 19397]
gi|153937373|ref|YP_001389261.1| transcription-repair coupling factor [Clostridium botulinum A str.
Hall]
gi|148290963|emb|CAL85099.1| transcription-repair coupling factor [Clostridium botulinum A str.
ATCC 3502]
gi|152930142|gb|ABS35642.1| transcription-repair coupling factor [Clostridium botulinum A str.
ATCC 19397]
gi|152933287|gb|ABS38786.1| transcription-repair coupling factor [Clostridium botulinum A str.
Hall]
Length = 1168
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 230/614 (37%), Positives = 373/614 (60%), Gaps = 26/614 (4%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K+P+ +SKL ++ W + K K K +I+++ DL++LY R K Y + +
Sbjct: 559 SEGKKPK-VSKLG-SSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGYKYSDDTVWQKQ 616
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F +FPYE TPDQ A D++RD+ E PMDRL+CGDVG+GKTEVA+RA F V GKQ
Sbjct: 617 FEEEFPYEETPDQLLAIEDIKRDM-ESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQ 675
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ +RFS +P I V ++SRF++ +E++ + IK G+++I++GT
Sbjct: 676 VAFLVPTTILAQQHYNNFKQRFSDFP-ITVDVISRFRTLSEQKATIKSIKEGNVDILIGT 734
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + + +LGLL++DEEQRFGVK KEK+ + K +VDVLTLSATPIPRTL+++L G
Sbjct: 735 HRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGV 794
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP ER P++T++ ++ + + +I E+ RGGQ+++V R++ + E ++
Sbjct: 795 RDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVYNRVESIHEMASYIS 854
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P + IAHGQ ++LE + F + ILI T I+E+G+DI+N NT+I+ D +
Sbjct: 855 KLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADK 914
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A+++ ELG GF++A KD+
Sbjct: 915 MGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALKDL 974
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDININ 497
IRG G + G Q G + ++G DL+ ML +++ +D+ V +++ I+
Sbjct: 975 EIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPV------ETSVELKID 1028
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+P+ YI +E+ + ++ + M E L ++ P S+ L+ Y+R
Sbjct: 1029 AYIPNTYIKDETQKIEVYKKIASIDSKEEF--MDIEEELEDRFSDIPISVYNLMNISYIR 1086
Query: 558 RMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV-----HRNSLTFEGDQ 608
+ + I +I V K+++ +K+ K+++D + EV + ++ +
Sbjct: 1087 SLGKKVDIEEIKEISNEVVFQFEDKSSLREKIVKIIMDKYSKEVAFKLNEKPAIGYNIKN 1146
Query: 609 IKAELLLELPREQL 622
IK E LL + R L
Sbjct: 1147 IKKEQLLPIIRNFL 1160
>gi|385808601|ref|YP_005844997.1| transcription-repair coupling factor [Ignavibacterium album JCM
16511]
gi|383800649|gb|AFH47729.1| Transcription-repair coupling factor [Ignavibacterium album JCM
16511]
Length = 1126
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/466 (45%), Positives = 312/466 (66%), Gaps = 4/466 (0%)
Query: 13 SIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 72
S++ Y +E K TLSKL T W+ K + K I++ +L+ELY R K
Sbjct: 475 SLVKKYSAGDSEGKLQPTLSKLG-TPEWQNTKARAKRKIKEAARELIELYARRKASKGFS 533
Query: 73 YPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 131
+ + E A F YE TPDQ +A ++++D+ + E PMDRL+CGDVGFGKTEVA+RA
Sbjct: 534 FSDDTIWQKELEASFFYEDTPDQARATEEIKQDM-QSENPMDRLVCGDVGFGKTEVAVRA 592
Query: 132 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 191
F V GKQ VL PT +LA+QHF+ S+R S++P +++ +LSRFQSKA+++E + +++
Sbjct: 593 AFKAVQDGKQVAVLVPTTILAEQHFNTFSDRLSQFP-VRIAVLSRFQSKAKQKEIVQLLE 651
Query: 192 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 251
G ++II+GTH LL V + +LGLL++DEE RFGV KEK+ ++++D LTL+ATPIP
Sbjct: 652 EGKIDIIIGTHRLLSKDVKFKDLGLLIIDEEHRFGVTAKEKLRQIRVNIDTLTLTATPIP 711
Query: 252 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 311
RTL L+L G RD S+I+TPPP R PI T +S F+ +K+ I E+ R GQV++V R++
Sbjct: 712 RTLNLSLLGARDLSIIATPPPNRQPIYTSVSVFNIQKIREWILREVSRNGQVYFVHDRVQ 771
Query: 312 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 371
+ + ++LQ+ P + I IAHGQ +LEE + F +LI T I+ESG+DI N
Sbjct: 772 SIGKLAEYLQRNIPEIKIGIAHGQLTPSKLEEVIHNFLNKKFDVLISTKIIESGIDIPNV 831
Query: 372 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 431
NTIIV +FGLA+L+QLRGRVGR+D++A+AY P + ++ +AL RL A+EE E+G
Sbjct: 832 NTIIVNRADRFGLAELHQLRGRVGRSDRQAYAYFIVPSLTGITKKALRRLQAIEEFTEIG 891
Query: 432 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV 477
GF L+ +D+ IRG G + G++QTG + +G DL+ +++ E++ ++
Sbjct: 892 SGFNLSMRDLEIRGAGNLLGKEQTGFIDEIGFDLYIKLINEAVEEL 937
>gi|416842436|ref|ZP_11905017.1| transcription-repair coupling factor [Staphylococcus aureus O11]
gi|416847784|ref|ZP_11907368.1| transcription-repair coupling factor [Staphylococcus aureus O46]
gi|323438735|gb|EGA96475.1| transcription-repair coupling factor [Staphylococcus aureus O11]
gi|323442053|gb|EGA99688.1| transcription-repair coupling factor [Staphylococcus aureus O46]
Length = 1168
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|300774874|ref|ZP_07084737.1| transcription-repair coupling factor [Chryseobacterium gleum ATCC
35910]
gi|300506689|gb|EFK37824.1| transcription-repair coupling factor [Chryseobacterium gleum ATCC
35910]
Length = 1122
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/557 (40%), Positives = 341/557 (61%), Gaps = 21/557 (3%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQ 85
R LSKL T W+ K K K ++++ DL++LY R K Y P + E A
Sbjct: 496 REVVLSKLGSPT-WKSLKQKTKAKVKQIAFDLIKLYAQRKTAKGFAYTPDSYLQNELEAS 554
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ+KA +DV+RD+ E +T MDRL+CGDVGFGKTEVA+RA F + GKQ VL
Sbjct: 555 FIYEDTPDQEKATIDVKRDM-EADTVMDRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVL 613
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA QH+ ER +P + V ++RF++ +K E L+ +K+G ++II+GTH L+
Sbjct: 614 VPTTILAFQHYRSFKERLKDFP-VNVAYVNRFRTAKQKSETLEALKNGKVDIIIGTHQLV 672
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
S V + +LGLL++DEE +FGV K+K+ + K +VD LTL+ATPIPRTL +L RD S
Sbjct: 673 SSSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKNNVDTLTLTATPIPRTLQFSLMAARDLS 732
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I TPPP R P++T L F++E + A+ YEL R GQV+++ RI+ L++ +Q+ P
Sbjct: 733 VIKTPPPNRQPVETQLIGFNEETLRDAVSYELQRDGQVYFINNRIENLKDIAGLIQRLVP 792
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
+ HGQ +QLE+ + F +G +L+ T IVESG+D+ NANTI + D Q+FG+A
Sbjct: 793 DARVITGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANTIFINDAQRFGMA 852
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ+A KD+ IRG
Sbjct: 853 DLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRG 912
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY-------------KSVQI 492
G + G +Q+G + +G + + +++ E+L ++ + + K V I
Sbjct: 913 AGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDADFENLFENEEDRQKLFKSVKDVNI 972
Query: 493 DININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
D ++ LP YI++ E + + + AE E D L QF L ++G P LL
Sbjct: 973 DTDLELMLPDSYISNTEERLLLYQKIAEINNEAD---LHQFELELIDRFGPLPKEAINLL 1029
Query: 552 KKLYVRRMAADIGITKI 568
K + ++ +AA+IG KI
Sbjct: 1030 KSVSLKWLAAEIGFEKI 1046
>gi|298207099|ref|YP_003715278.1| transcription-repair coupling factor [Croceibacter atlanticus
HTCC2559]
gi|83849733|gb|EAP87601.1| transcription-repair coupling factor [Croceibacter atlanticus
HTCC2559]
Length = 1126
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/561 (40%), Positives = 340/561 (60%), Gaps = 15/561 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQK 95
+ AW++ K K K ++++ +L++LY R +K + P E + F YE TPDQ
Sbjct: 504 SQAWKKLKQKTKSKVKEIAFNLIKLYAKRRLEKGFAFGPDTTMQLELESSFIYEDTPDQS 563
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
A DV++D+ E E PMDRL+CGDVGFGKTE+A+RA F V GKQ VL PT +LA QH
Sbjct: 564 SATEDVKKDM-ENERPMDRLVCGDVGFGKTEIAIRAAFKAVDNGKQVAVLVPTTILAFQH 622
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
SER +P + V L+RF+S E+ E + ++ G ++II+GTH L+ V + +LG
Sbjct: 623 HKTFSERLKDFP-VTVEYLNRFRSAKERRETIADLEAGKVDIIIGTHQLVNKTVKFKDLG 681
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL+VDEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L RD S I+TPPP R
Sbjct: 682 LLIVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLSTITTPPPNRY 741
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P++T++ FS+E + A++YE+ RGGQV++V RI+ ++E +Q+ P I I HGQ
Sbjct: 742 PVETNVIRFSEESIRDAVQYEIQRGGQVYFVHNRIENIKEVAGMIQRVVPDAKIGIGHGQ 801
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
++LE+ M F G +L+ T I+ESGLD+ NANTI + + FGL+ L+Q+RGRVG
Sbjct: 802 MEGKKLEQLMLSFMNGDFDVLVSTTIIESGLDVPNANTIFINNANNFGLSDLHQMRGRVG 861
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A Y P S ++D A +R+ ALE+ +LG GF +A KD+ IRG G + G +Q+
Sbjct: 862 RSNKKAFCYFITPPYSAMTDDARKRITALEQFSDLGSGFNIAMKDLEIRGAGDLLGGEQS 921
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVIS---------VPYKSVQIDININPRLPSEYIN 506
G + +G D + ++L E++ ++ E V K ID +I+ P +YIN
Sbjct: 922 GFINEIGFDTYQKILNEAIEELKETEFKDLYDTKEEDRVFLKDTTIDTDISLLFPDDYIN 981
Query: 507 HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGIT 566
++ + + E +E+ L + + L ++G+ P E LL + V+ +A +GI
Sbjct: 982 NISERLNLYTELNSISEEK--ELEAYEKRLLDRFGELPQQAEDLLNSVRVKWIATQVGIE 1039
Query: 567 K-IYASGKMVGMKTNMNKKVF 586
K I GKM+G N + F
Sbjct: 1040 KLILKQGKMIGYFINDQQSPF 1060
>gi|258407227|ref|ZP_05680372.1| transcription-repair coupling factor [Staphylococcus aureus A9763]
gi|257841185|gb|EEV65634.1| transcription-repair coupling factor [Staphylococcus aureus A9763]
Length = 1168
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQVLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTENAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|403386101|ref|ZP_10928158.1| transcription-repair coupling factor [Kurthia sp. JC30]
Length = 1174
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 239/636 (37%), Positives = 376/636 (59%), Gaps = 34/636 (5%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K L KL T W++ K K A+Q + DL++LY R +K + P +
Sbjct: 554 SEDKSSPKLHKLGGT-EWQKTKRKVSSAVQDIADDLIKLYAKREAEKGYAFSPDGDEMRN 612
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPYE T DQ + +V+ D+ ERE PMDRL+CGDVG+GKTEVA+RA + + GKQ
Sbjct: 613 FEMNFPYEETEDQLRTIREVKADM-ERERPMDRLVCGDVGYGKTEVAIRAAYKAILDGKQ 671
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QHF+ + ERF + + VG+LSRF+++ ++ E L +K G ++I+VGT
Sbjct: 672 VAFLVPTTILAQQHFETLQERFQE-EGVNVGMLSRFRTRKQQTETLKGLKDGTVDIVVGT 730
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V+YN+LGLL+VDEEQRFGV KEKI + + +VDVLTL+ATPIPRTL++++ G
Sbjct: 731 HRLLSKDVIYNDLGLLIVDEEQRFGVTHKEKIKTLRANVDVLTLTATPIPRTLHMSMVGV 790
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ + V AI+ E+ RGGQVFY+ R++ + ++ +Q
Sbjct: 791 RDLSVIETPPANRFPVQTYVMEHNGALVREAIEREMSRGGQVFYLHNRVEDMAREVEKIQ 850
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P I AHG+ +LE + F +G +L+ T I+E+G+D+ NANT+IV +
Sbjct: 851 MLVPEARIGHAHGKMTESELESMVYGFLEGEYDVLVTTTIIETGVDMPNANTLIVNNADH 910
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ + +RL A++E ELG GF++A +D+
Sbjct: 911 MGLSQLYQLRGRVGRSNRVAYAYFMYQRDKVLTEVSEQRLQAIKEFTELGSGFKIAMRDL 970
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPR 499
IRG G + G QQ G + +VG DL+ +ML E++ ++ + ++ +I + +
Sbjct: 971 SIRGAGNLLGSQQHGFIDSVGFDLYSQMLEEAVKERQIAKGEEVAPIMPDPEIMLPYDAY 1030
Query: 500 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 559
+P +YI ++M + Q+++ + E + ++G P E L++ +R
Sbjct: 1031 IPDQYIPDGYQKIQMYKRIKAIDSQEMYD--EIIEEMHDRFGDMPQETERLMRIALMRAT 1088
Query: 560 AADIGITKIYASGKMVGMK-----TNMNKKVFKMMIDSM--------TSEVHRNSLTFEG 606
A +G+ I K+V ++ +NM K++ DSM T E ++ +LT +
Sbjct: 1089 AMKVGVESIKEKNKIVRIQFSDIGSNMVDGA-KIVSDSMQFGRAVGFTFENNKLALTLDE 1147
Query: 607 DQIKAELLLELPREQLLNWIFQCLAELYASLPALIK 642
++ +LP F L +L A LP+ +K
Sbjct: 1148 RKVSG----DLP--------FNVLEKLMAGLPSALK 1171
>gi|426405728|ref|YP_007024699.1| transcription-repair coupling factor [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425862396|gb|AFY03432.1| transcription-repair coupling factor [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 1172
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 235/563 (41%), Positives = 337/563 (59%), Gaps = 19/563 (3%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQFPYEPTPDQKK 96
TAWE+ K K K ++ + DL+ LY R + RP + K + F FPYE T DQ +
Sbjct: 582 TAWEKTKAKVKSHVRDIAADLLALYAKRAEMHRPAFVIKEDEVLMFDNGFPYEETDDQLR 641
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A D+ +DL + PMDRL+CGDVGFGKTEVA+RA F + A KQ VLAPT VL QHF
Sbjct: 642 AINDIRKDLKSTK-PMDRLVCGDVGFGKTEVAMRAAFFAIQARKQVAVLAPTTVLTFQHF 700
Query: 157 DVVSERFSKYP-DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
+ +RF +P DI+V L+RF + AE ++ L +K G +++IVGTH LLGS + Y +LG
Sbjct: 701 ETFKKRFEGWPVDIRV--LNRFVTPAEVKKTLQDLKDGKVDLIVGTHKLLGSSIAYKDLG 758
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL++DEEQ+FGV KEKI K SVD LTLSATPIPRTL +AL G RD SLI+T P +RL
Sbjct: 759 LLIIDEEQKFGVTHKEKIKKIKTSVDTLTLSATPIPRTLNMALVGIRDLSLINTAPVDRL 818
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P +T ++ F E + A+ E+ RGGQV+++ RI+ + +D L+Q P I +AHGQ
Sbjct: 819 PTRTFVTKFDAETIRKAVTAEISRGGQVYFIHNRIESIYGLVDELRQIVPEARIRVAHGQ 878
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
+LE+ M F I +L+CT IVESG+D+ ANT+ + FGL+QLYQLRGRVG
Sbjct: 879 MEEHELEKAMLAFFHHEIDVLVCTAIVESGMDVPRANTMFIDTAHLFGLSQLYQLRGRVG 938
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+ A+ YL P L + ERL ++E LG G ++A+ D+ +RG G I GE+Q+
Sbjct: 939 RSKTRAYCYLMMPRNHKLDKEQQERLKIIQENTALGSGIKIAQYDLELRGSGNILGEEQS 998
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMV 515
G V +VG +++ ++L E+L++ V + ++++ I +P YI + +
Sbjct: 999 GHVNSVGYEMYMDLLNEALAEAKGESVEDMDLDP-ELNLKIPALIPDAYIKDIR-----I 1052
Query: 516 NEAEKAAEQDIWC---LMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASG 572
A DI L + E LR Q+G P L+ + +RR ++G+ I A
Sbjct: 1053 RLGYYKALADITSNEELDRIEEELRDQFGPIPEQTVNLMGLMLIRRQCKELGVRDISAGL 1112
Query: 573 KMVGM----KTNMN-KKVFKMMI 590
K + + KT ++ +KV ++ I
Sbjct: 1113 KSISLIFTEKTKLSPEKVIQLAI 1135
>gi|308171946|ref|YP_003918651.1| transcription-repair coupling factor [Bacillus amyloliquefaciens DSM
7]
gi|384162461|ref|YP_005543840.1| transcription-repair coupling factor [Bacillus amyloliquefaciens LL3]
gi|307604810|emb|CBI41181.1| transcription-repair coupling factor [Bacillus amyloliquefaciens DSM
7]
gi|328910016|gb|AEB61612.1| transcription-repair coupling factor [Bacillus amyloliquefaciens LL3]
Length = 1177
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/493 (43%), Positives = 323/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + +
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYAFSPDHEMQRQ 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FEAAFPYQETDDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETIMERFQDYP-INIGLLSRFRTRKESNETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVDDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + + + +IDI ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEE-RKGDTPKIEQFETEIDIELDAYIP 1032
Query: 502 SEYINHLENPMEM 514
YI + ++M
Sbjct: 1033 ENYIQDGKQKIDM 1045
>gi|332878210|ref|ZP_08445938.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332683822|gb|EGJ56691.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 1104
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/562 (39%), Positives = 345/562 (61%), Gaps = 18/562 (3%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQ 85
+P + KL + AW+ K K K ++++ +L++LY R + + + + + E A
Sbjct: 484 KPPKIYKLG-SGAWKALKQKTKARVKEIAFNLIQLYAKRKEAQGYAFAHDSYMQNELEAS 542
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V GKQ VL
Sbjct: 543 FLYEDTPDQSKATAEVKADM-ESAKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVL 601
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT VLA QH+ S+R +P +++ L+RF++ EK+ L+ + G L+I++GTH ++
Sbjct: 602 VPTTVLAFQHYQTFSQRMKDFP-VRIDYLNRFRTAKEKKIILEELAKGQLDIVIGTHQIV 660
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L RD S
Sbjct: 661 GEKVQYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLS 720
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+TPPP R PI + + FS+E + I+YE+ RGGQVF++ R++ ++E +Q+ P
Sbjct: 721 VINTPPPNRYPIDSQVIPFSEEVIRDGIRYEIQRGGQVFFMHNRVENIQEVAGMIQRLLP 780
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
IAI HGQ ++LEETM F +GA +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 781 DARIAIGHGQMDGKKLEETMLAFMEGAYDVLVATTIIESGLDVPNANTIFINNAHNFGLS 840
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG G +A KD+ IRG
Sbjct: 841 DLHQMRGRVGRSNKKAFCYFITPPLIAMSDDARKRIEAIAQFSDLGSGLNIAMKDLEIRG 900
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS----------VQIDIN 495
G + G +Q+G + +G D + ++L E+++++ E+ S Y++ QID +
Sbjct: 901 AGDLLGGEQSGFINEIGFDTYQKILQEAITELKENE-FSELYRTAEEDKTYLTDTQIDTD 959
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
P Y+N + + + NE ++ L + +L ++GK P LL +
Sbjct: 960 FELLFPDTYVNRVAERLNLYNELSNLTNEE--ALQVYQRNLIDRFGKLPPQAIDLLNSVR 1017
Query: 556 VRRMAADIGITK-IYASGKMVG 576
V+ +A +GI K + +GKM G
Sbjct: 1018 VKWLATRMGIEKLVMKNGKMTG 1039
>gi|153940210|ref|YP_001392893.1| transcription-repair coupling factor [Clostridium botulinum F str.
Langeland]
gi|384463853|ref|YP_005676448.1| transcription-repair coupling factor [Clostridium botulinum F str.
230613]
gi|152936106|gb|ABS41604.1| transcription-repair coupling factor [Clostridium botulinum F str.
Langeland]
gi|295320870|gb|ADG01248.1| transcription-repair coupling factor [Clostridium botulinum F str.
230613]
Length = 1168
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 231/619 (37%), Positives = 376/619 (60%), Gaps = 29/619 (4%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K+P+ +SKL ++ W + K K K +I+++ DL++LY R K Y + +
Sbjct: 559 SEGKKPK-VSKLG-SSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGYKYSDDTVWQKQ 616
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F +FPYE TPDQ A D++RD+ E PMDRL+CGDVG+GKTEVA+RA F V GKQ
Sbjct: 617 FEEEFPYEETPDQLLAIEDIKRDM-ESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQ 675
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ +RFS +P I V ++SRF++ +E++ + IK G+++I++GT
Sbjct: 676 VAFLVPTTILAQQHYNNFKQRFSDFP-ITVDVISRFRTLSEQKATIKSIKEGNVDILIGT 734
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + + +LGLL++DEEQRFGVK KEK+ + K +VDVLTLSATPIPRTL+++L G
Sbjct: 735 HRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGV 794
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP ER P++T++ ++ + + +I E+ RGGQ+++V R++ + E ++
Sbjct: 795 RDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVYNRVESIHEMASYIS 854
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P + IAHGQ ++LE + F + ILI T I+E+G+DI+N NT+I+ D +
Sbjct: 855 KLVPEGRVQIAHGQMKEKELEHVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADK 914
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A+++ ELG GF++A KD+
Sbjct: 915 MGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALKDL 974
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDININ 497
IRG G + G Q G + ++G DL+ ML +++ +D+ V +++ I+
Sbjct: 975 EIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPV------ETSVELKID 1028
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+P+ YI +E+ + ++ + M E L ++ P S+ L+ Y+R
Sbjct: 1029 AYIPNTYIKDETQKIEVYKKIASIDSKEEF--MDIEEELEDRFSDIPISVYNLMNISYIR 1086
Query: 558 RMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV-----HRNSLTFEGDQ 608
+ + I +I V K+++ +K+ K+++D + EV + ++ +
Sbjct: 1087 SLGKKVDIEEIKEISNEVVFQFEDKSSLREKIVKIIMDKYSKEVAFKLNEKPAIGYNIKN 1146
Query: 609 IKAELLLELPR---EQLLN 624
IK E LL + R E ++N
Sbjct: 1147 IKKEQLLPIIRNFLEHIVN 1165
>gi|384157668|ref|YP_005539741.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
TA208]
gi|384166683|ref|YP_005548061.1| transcription-repair coupling factor [Bacillus amyloliquefaciens XH7]
gi|328551756|gb|AEB22248.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
TA208]
gi|341825962|gb|AEK87213.1| transcription-repair coupling factor [Bacillus amyloliquefaciens XH7]
Length = 1177
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/493 (43%), Positives = 323/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + +
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYAFSPDHEMQRQ 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FEAAFPYQETDDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETIMERFQDYP-INIGLLSRFRTRKESNETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVDDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + + + +IDI ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEE-RKGDTPKIEQFETEIDIELDAYIP 1032
Query: 502 SEYINHLENPMEM 514
YI + ++M
Sbjct: 1033 ENYIQDGKQKIDM 1045
>gi|392958404|ref|ZP_10323916.1| transcription-repair coupling factor [Bacillus macauensis ZFHKF-1]
gi|391875574|gb|EIT84182.1| transcription-repair coupling factor [Bacillus macauensis ZFHKF-1]
Length = 1177
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/562 (40%), Positives = 350/562 (62%), Gaps = 14/562 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
F +E K P+ + + W++ K+K + ++Q + DL++LY R + K+ A
Sbjct: 554 FVGSEAKEPKIYALGGND--WKKVKSKVQSSVQDIADDLIKLYAEREASVGYGFNKDGAE 611
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF + FPY+ T DQ +A ++++D+ ER PMDRL+CGDVG+GKTEVA+RA F +
Sbjct: 612 QQEFESSFPYQETEDQLRAIDEIKKDM-ERSRPMDRLLCGDVGYGKTEVAIRAAFKAIMD 670
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ ERF+ +P I +G LSRF+S+ E+ E L +K G ++I
Sbjct: 671 GKQVAFLVPTTILAQQHYETFRERFADFP-ITIGSLSRFRSRKEQNEVLKGLKKGTVDIA 729
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL V Y++LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++
Sbjct: 730 IGTHRLLSKDVEYHDLGLLIIDEEQRFGVSHKEKIKRLKSNVDVLTLTATPIPRTLHMSM 789
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + V AI+ EL RGGQV+++ R++ +E +
Sbjct: 790 LGVRDLSVIETPPENRFPVQTYVVEYGASLVREAIERELGRGGQVYFLYNRVESIERMAE 849
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+ P V +A AHGQ +LE M F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 850 QIASLIPDVKVAAAHGQMSENELEGVMLDFLEGNTDVLVSTTIIETGVDIPNVNTLIVYD 909
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A
Sbjct: 910 ADKMGLSQLYQLRGRVGRSNRVAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAM 969
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---VQIDIN 495
+D+ IRG G + G QQ G + +VG DL+ +ML E++ E P K+ ++++I
Sbjct: 970 RDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLQEAI----EERKGDAPKKAAVIIEMNIE 1025
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
++ +PS YI + ++M + + A + + + +SL ++G P +E LL
Sbjct: 1026 VDAYIPSTYIEDSKQKIDMYKQFK--AVSSLKDVDELHDSLIDRFGDYPVEVECLLLIAR 1083
Query: 556 VRRMAADIGITKIYASGKMVGM 577
++ +A + +I G +V M
Sbjct: 1084 IKELAKREHVDRIDQKGDIVTM 1105
>gi|429753012|ref|ZP_19285841.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
326 str. F0382]
gi|429175309|gb|EKY16757.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
326 str. F0382]
Length = 1110
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/561 (39%), Positives = 343/561 (61%), Gaps = 16/561 (2%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQ 85
+P + KL + AW+ K K K ++++ +L++LY R + + + + + E A
Sbjct: 490 KPPKIYKLG-SGAWKALKQKTKARVKEIAFNLIQLYAKRKEAQGFAFAHDSYMQNELEAS 548
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V GKQ VL
Sbjct: 549 FLYEDTPDQSKATAEVKADM-ESSKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVL 607
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT VLA QHF S+R +P +++ L+RF++ EK+ L+ + G L+II+GTH ++
Sbjct: 608 VPTTVLAFQHFQTFSQRMKDFP-VRIDYLNRFRTAKEKKIILEELAKGQLDIIIGTHQIV 666
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L RD S
Sbjct: 667 GEKVTYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLS 726
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+TPPP R PI + + F++E + I+YE+ RGGQVF++ R++ ++E +Q+ P
Sbjct: 727 VINTPPPNRYPIDSQVVPFNEEVIRDGIRYEIQRGGQVFFMHNRVENIQEVAGMIQRLLP 786
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
IAI HGQ ++LEETM F +G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 787 DARIAIGHGQMDGKKLEETMLAFMEGRYDVLVATTIIESGLDVPNANTIFINNAHNFGLS 846
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG G +A KD+ IRG
Sbjct: 847 DLHQMRGRVGRSNKKAFCYFITPPLIAMSDDARKRIEAIAQFSDLGSGLNIAMKDLEIRG 906
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---------VQIDINI 496
G + G +Q+G + +G D + ++L E+++++ E+ + + + QID +
Sbjct: 907 AGDLLGGEQSGFINEIGFDTYQKILQEAITELKENEFSELYHTAEEDKTYLTDTQIDTDF 966
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
P Y+N + + + NE ++ L + +L ++GK P LL + V
Sbjct: 967 ELLFPDTYVNRVAERLNLYNELSNLPNEE--ALQVYERNLIDRFGKLPPQAIDLLNSVRV 1024
Query: 557 RRMAADIGITK-IYASGKMVG 576
+ +A +GI K + +GKM G
Sbjct: 1025 KWLATRMGIEKLVMKNGKMTG 1045
>gi|417896626|ref|ZP_12540571.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21235]
gi|341840466|gb|EGS81970.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21235]
Length = 708
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 90 YVASEDKTPK-LNKLG-GSEWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 147
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 148 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 206
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 207 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 265
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 266 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 325
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 326 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 385
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 386 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 445
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 446 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 505
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 506 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 565
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 566 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 623
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 624 HALHSGITLIKDKGKIIDI 642
>gi|403382800|ref|ZP_10924857.1| hypothetical protein PJC66_23572 [Paenibacillus sp. JC66]
Length = 1173
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/505 (42%), Positives = 326/505 (64%), Gaps = 13/505 (2%)
Query: 8 SCTCGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK 67
S I + E K P+ + KL T W R K K + +++ + +L++LY R
Sbjct: 531 SVPIDQIDLIQKYVGAEEKEPK-VYKLG-GTEWNRVKGKVRTSVKDIADELIQLYAAR-- 586
Query: 68 QKRPPYP---KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGK 124
Q P YP P EF FPY+ TPDQ +A ++++D+ E+ PMDRL+CGDVG+GK
Sbjct: 587 QSTPGYPFTKDTPYQQEFEGLFPYDETPDQLRAIEEIKKDM-EKAYPMDRLLCGDVGYGK 645
Query: 125 TEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKE 184
TEVA+RA F GKQ VL PT +LA+QH++ ERFS YP + +LSRF+S+ E+
Sbjct: 646 TEVAIRAAFKAAIDGKQVAVLVPTTILAQQHYETFKERFSDYP-FNIQVLSRFRSRKEQN 704
Query: 185 EHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLT 244
E + IK+G ++I++GTH +L + V + +LGLL+VDEEQRFGV KEK+ K +VDVLT
Sbjct: 705 EAIKGIKNGSVDIVIGTHRILSADVQFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLT 764
Query: 245 LSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVF 304
L+ATPIPRTL++++ G RD S+I TPP R P++T++ S+ + AI+ EL R GQV+
Sbjct: 765 LTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHSQVLIREAIERELSREGQVY 824
Query: 305 YVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 364
Y+ R++G+++ + + P +A+AHGQ ++LE T+ F G +L+ T+I+E+
Sbjct: 825 YLYNRVQGIQQMAEQISMLVPEARVAVAHGQMSEQELERTILDFLDGEYDVLVSTSIIET 884
Query: 365 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAAL 424
G+DI N NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A+
Sbjct: 885 GVDIPNVNTLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLSEVAEKRLQAI 944
Query: 425 EECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHC--- 481
+E ELG GF++A +D+ IRG G + G +Q G + +VG DL+ +ML E ++K +
Sbjct: 945 KEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIAKKKKEMGGE 1004
Query: 482 -VISVPYKSVQIDININPRLPSEYI 505
V + ++D++++ LPS+YI
Sbjct: 1005 PVEQAEQWNTKLDLHLDAYLPSDYI 1029
>gi|403238488|ref|ZP_10917074.1| transcription-repair coupling factor [Bacillus sp. 10403023]
Length = 1178
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/549 (40%), Positives = 343/549 (62%), Gaps = 12/549 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ + KL T W+R K K + ++Q + DL++LY R K + P E
Sbjct: 559 SEGKEPK-IYKLGGTD-WKRVKKKVESSVQDIADDLIKLYAEREASKGFAFSPDGEMQRE 616
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 617 FEALFPYQETEDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIMDGKQ 675
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF ++P I +GLLSRF+SK ++ E + +K G ++++VGT
Sbjct: 676 VAILVPTTILAQQHYETIRERFQEFP-ISIGLLSRFRSKKQQTEVMKGLKSGTIDMVVGT 734
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL + Y +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++ G
Sbjct: 735 HRLLSKDITYKDLGLLIIDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMLGV 794
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ E + AI+ E+ R GQV+++ R++ +E + +
Sbjct: 795 RDLSVIETPPENRFPVQTYVVEYNGELIREAIEREMARDGQVYFLYNRVEDIERKAEEIS 854
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P IA AHG+ +LE + F G +L+ T I+E+G+DI N NT+IVQD +
Sbjct: 855 MLVPDARIAYAHGKMSENELESVILNFLDGQYDVLVTTTIIETGVDIPNVNTLIVQDADR 914
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 915 MGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEVAEKRLQAIKEFTELGSGFKIAMRDL 974
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV--DEHCVISVPYKSVQIDININPR 499
IRG G I G QQ G + +VG DL+ +ML E++ + D V V +V+ID+ ++
Sbjct: 975 SIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEERMGDTAAVKQV---NVEIDVEVDAY 1031
Query: 500 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 559
+P YI ++M + + + E + ++G+ P + L K ++
Sbjct: 1032 IPDAYIADGRQKIDMYKRFRGITTME--DIEELQEEMIDRFGEYPEEVNYLFKIAKIKVY 1089
Query: 560 AADIGITKI 568
A G+ I
Sbjct: 1090 ALAEGVISI 1098
>gi|253730971|ref|ZP_04865136.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253725283|gb|EES94012.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus USA300_TCH959]
Length = 1168
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALYSGITLIKDKGKIIDI 1102
>gi|222100017|ref|YP_002534585.1| Transcription-repair coupling factor [Thermotoga neapolitana DSM
4359]
gi|221572407|gb|ACM23219.1| Transcription-repair coupling factor [Thermotoga neapolitana DSM
4359]
Length = 895
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 234/553 (42%), Positives = 358/553 (64%), Gaps = 14/553 (2%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE-FAAQFPYEPTPDQKKAF 98
W+R K + I+K V +L+ELYL R + + P +P + E FA FPY TPDQ+K
Sbjct: 321 WKRTLKKVREDIEKRVRELVELYLKREEVRGTLLPGDPELEEKFAETFPYIETPDQQKCI 380
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+V DL+ E PMDRL+CGD G GKTEVALRA F V +GKQ VL PT VLA+QH++
Sbjct: 381 EEVLTDLSS-EKPMDRLLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVLARQHYEN 439
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
ER + ++V LL ++ E++E L+ +K G +++++GTH+LL RV +++LGL++
Sbjct: 440 FKERLEPF-GVRVELLDSSRTLRERKEILEGLKKGEIDVVIGTHALLNERVEFSDLGLVI 498
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQ+FGV+QKEK ++SV+VL+LSATPIPRTL++AL+G +D S+I+ PPP R P+
Sbjct: 499 IDEEQKFGVEQKEKFKKMRLSVNVLSLSATPIPRTLHMALSGMKDLSVINAPPPGRKPVH 558
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
+++ +++E V A+ E++RGGQV YV R++ L E ++ L++ FP + IA+AHG+
Sbjct: 559 VYIAEYNEELVKGAVVREVNRGGQVIYVHNRVEELPEVLENLKRMFPELRIAMAHGKMSR 618
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
R +E+ + +F G I +L+CT I+E+G+DI NANT+IV D ++GLAQLYQLRGRVGR+D
Sbjct: 619 RVMEKVVHEFYSGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLAQLYQLRGRVGRSD 678
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A AY YP + ALERL L+ G G Q+A KDM +RG G + G +Q G++
Sbjct: 679 RRAFAYFLYPKG--VPKSALERLRVLKAHTGPGSGLQIAMKDMEMRGIGDVLGLEQHGNI 736
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR---LPSEYINHLENPMEMV 515
++G+ L+ E+L E+++KV + V +VQI+I P +P +YI+ NP+E +
Sbjct: 737 ISIGLKLYNEILRETVTKVKKKRVERK--HTVQIEIENPPGRFFIPEDYIS---NPVERL 791
Query: 516 NEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM 574
+ A+ + + + E +R ++G+ P +++LL +R A+ +GI KI M
Sbjct: 792 RMYRRLASASEEGEIEEILEEMRDRFGEPPEEVKLLLDYFRIRIRASKLGIRKIRFDHFM 851
Query: 575 VGMKTNMNKKVFK 587
V + N + K
Sbjct: 852 VELLPGKNSPLLK 864
>gi|452972536|gb|EME72366.1| transcription-repair coupling factor [Bacillus sonorensis L12]
Length = 1177
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 228/577 (39%), Positives = 354/577 (61%), Gaps = 25/577 (4%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + E
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVESSVQDIADDLIKLYAEREASKGYAFSPDHEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ ++ ++++D+ E+E PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FEAAFPYQETEDQLRSIQEIKKDM-EKERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETIQERFQDYP-INIGLLSRFRTRKEATETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKRIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E + +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKAEEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVYDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + + V +ID+ ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAI-EARKGDAPQVERFEPEIDLELDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAA---EQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
Y+ + ++M A E+D + + + ++G+ P +E L
Sbjct: 1033 QTYVTDGKQKIDMYKRFRSVATIEEKD-----ELQDEMIDRFGEYPKEVEYLFA------ 1081
Query: 559 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTS 595
I K+YA + V + +K ++ ID S
Sbjct: 1082 ----IAEMKVYAIKERVEL-IKQDKDAVRLTIDEKAS 1113
>gi|424866640|ref|ZP_18290472.1| Transcription-repair coupling factor [Leptospirillum sp. Group II
'C75']
gi|124516600|gb|EAY58108.1| transcription-repair coupling factor [Leptospirillum rubarum]
gi|387222729|gb|EIJ77148.1| Transcription-repair coupling factor [Leptospirillum sp. Group II
'C75']
Length = 1153
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/489 (45%), Positives = 313/489 (64%), Gaps = 5/489 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+R E P TL ++ T W R + K + I+K+ DL++LY R + + +
Sbjct: 535 YRGPEGSAP-TLDRIGGQT-WNRTRQKVRKEIEKISQDLVDLYARRKTVSGHSFSADLLL 592
Query: 80 A-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY+ TPDQ+ A+ V D+ E TPMDRLI GDVGFGKTE+A+RA F V+
Sbjct: 593 VREFENSFPYDLTPDQEDAWRAVSEDM-EAPTPMDRLILGDVGFGKTEIAMRAAFKAVAD 651
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G Q +L PT +LAKQH++ +RFS +P +++G +SR S+AE + G ++I+
Sbjct: 652 GYQVALLVPTTLLAKQHYESFLDRFSGFP-VRIGHISRMVSQAEIRATRKKLSLGEIDIL 710
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GT +L+ + NLGLL++DEEQRFGV QKEK+ S SVDVLTLSATPIPRTL ++L
Sbjct: 711 IGTTALISKETTFRNLGLLIIDEEQRFGVGQKEKLKSRYTSVDVLTLSATPIPRTLQMSL 770
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R S I TPPP R PI+T + F + ++ AI EL R GQVF++ R++ + +
Sbjct: 771 SGLRGISFIMTPPPGRKPIRTAILTFDRHRIHEAIDRELARDGQVFFIHNRVQTISRMVH 830
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+L + FPGV I +AHGQ ++EE MEKF Q +IL+ T IVESGLDI ANTIIV
Sbjct: 831 YLAKLFPGVPIGMAHGQMEDSRMEEVMEKFIQRHYRILVSTAIVESGLDIPAANTIIVNR 890
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
FG+++LYQ+RGRVGR+ ++A+AY P +S L+D A +RL L++ LG G+Q+A
Sbjct: 891 ADMFGISELYQIRGRVGRSGQQAYAYFLIPSESGLTDTARKRLKTLQDNTSLGSGYQIAM 950
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G++ G QQTG + VG+DL+ EM+ E++ E + + + V+ID+
Sbjct: 951 RDMEIRGAGSLLGHQQTGHIALVGLDLYLEMVEEAIQSRIEPEAVPLAREEVRIDLGRES 1010
Query: 499 RLPSEYINH 507
R P +YI H
Sbjct: 1011 RFPEDYIEH 1019
>gi|146298962|ref|YP_001193553.1| transcription-repair coupling factor [Flavobacterium johnsoniae
UW101]
gi|146153380|gb|ABQ04234.1| transcription-repair coupling factor [Flavobacterium johnsoniae
UW101]
Length = 1121
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/562 (39%), Positives = 340/562 (60%), Gaps = 18/562 (3%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQF 86
P + KL + AW+ K K K ++ + +L++LY R +K + P + E + F
Sbjct: 500 PPKIYKLG-SNAWKVLKQKTKARVKHIAFNLIQLYAKRRLEKGFQFAPDSYLQNELESSF 558
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
YE TPDQ K+ +V+ D+ E + PMDRL+CGDVGFGKTEVA+RA F V KQ VL
Sbjct: 559 IYEDTPDQMKSTQEVKADM-ESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDNSKQVAVLV 617
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA QH+ SER P + +G L+RF++ +K + L + G L+I++GTH L+
Sbjct: 618 PTTILAYQHYRTFSERLKDMP-VSIGYLNRFRTAKQKTQTLKDLAEGKLDIVIGTHQLVN 676
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
VV+ +LGLL+VDEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L RD S+
Sbjct: 677 KNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIPRTLQFSLMAARDLSV 736
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPPP R PI+T++ F++E + AI YE+ R GQVF++ RI+ ++E +Q+ P
Sbjct: 737 ITTPPPNRYPIETNVVGFNEEIIRDAISYEIQRNGQVFFINNRIENIKEVAGMIQRLVPN 796
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+ I HGQ +LEE M F G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 797 ARVGIGHGQMDGAKLEELMLGFMNGDFDVLVATTIIESGLDVPNANTIFINNANNFGLSD 856
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+Q+RGRVGR++K+A Y P S +++ A +R+ ALE+ ELG GF +A KD+ IRG
Sbjct: 857 LHQMRGRVGRSNKKAFCYFICPPYSSMTEDARKRIQALEQFSELGSGFNIAMKDLEIRGA 916
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKV----------DEHCVISVPY-KSVQIDIN 495
G + G +Q+G + +G D + +++ E++ ++ +E+ + + Y K +QID +
Sbjct: 917 GDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYPEENDIDTKEYVKDIQIDAD 976
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
P EYIN++ + + NE A +D L +F L ++G P LL +
Sbjct: 977 FELLFPDEYINNVSERLVLYNEL--GAIKDEAGLQEFERKLIDRFGPLPKQATALLNSIR 1034
Query: 556 VRRMAADIGITK-IYASGKMVG 576
++ +A +GI K + GKM+G
Sbjct: 1035 IKWIATKVGIEKLVLKQGKMIG 1056
>gi|374596374|ref|ZP_09669378.1| transcription-repair coupling factor [Gillisia limnaea DSM 15749]
gi|373871013|gb|EHQ03011.1| transcription-repair coupling factor [Gillisia limnaea DSM 15749]
Length = 1135
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 241/637 (37%), Positives = 364/637 (57%), Gaps = 36/637 (5%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQ 85
+P + KL + AW+ K K K ++ + +L+ELY R QK + P + E A
Sbjct: 502 KPPKIYKLG-SNAWKNLKEKTKSRVKHIAYNLIELYAKRRLQKGFAFGPDSYLQHELEAS 560
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ A V+ D+ E E PMDRL+CGDVGFGKTEVA+RA F V GKQ VL
Sbjct: 561 FIYEDTPDQTTATAAVKEDM-ETERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVL 619
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA QH +ER +P + V L+RF++ E+ E L ++ G ++II+GTH L+
Sbjct: 620 VPTTILAFQHHKTFTERLKDFP-VTVDYLNRFRTAKERRETLADLESGRVDIIIGTHQLV 678
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
V + +LGLL+VDEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L RD S
Sbjct: 679 SKAVKFKDLGLLIVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLS 738
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
I+T PP R PI+T + F++E + AI YE+ RGGQVF++ RI+ ++E +Q+ P
Sbjct: 739 TITTAPPNRYPIETQVVRFTEETIRDAISYEIQRGGQVFFIHNRIENIKEVAGMIQRLVP 798
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
+ I HGQ ++LE M F G +L+ T IVESGLD+ NANTI + + FGL+
Sbjct: 799 DAKVGIGHGQMEGKKLENLMLAFMNGEFDVLVSTTIVESGLDVTNANTIFINNANNFGLS 858
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P S ++D A +R+ ALE+ ELG GF +A KD+ IRG
Sbjct: 859 DLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKRITALEQFSELGSGFNIAMKDLEIRG 918
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-----------VQIDI 494
G + G +Q+G + +G D + ++L E++ ++ E+ + +K+ QID
Sbjct: 919 AGDLLGGEQSGFINEIGFDTYQKILNEAIEELKENEFKVLYHKNEDIESKTFVKDTQIDA 978
Query: 495 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+ P +YIN++ + + E ++ L +F L ++G+ P LL +
Sbjct: 979 DFELLFPDDYINNISERLNLYTELNGVKTEE--ELQKFEAKLVDRFGELPTQAADLLNSV 1036
Query: 555 YVRRMAADIGITK-IYASGKMVG----------MKTNMNKKVFKMMIDSMTSEVHRNSLT 603
++ +A+ IG+ K I GK++G +T KV + + + H +S T
Sbjct: 1037 RIKWIASHIGLEKIIMKQGKLIGYFIADQQSGFYQTQAFTKVLQYV------QTHSHSCT 1090
Query: 604 FEGDQIKAELLLELPREQL--LNWIFQCLAELYASLP 638
+ + +A L L L E++ ++ + L L LP
Sbjct: 1091 MKEKKTRAGLRLLLTFEKITSIDRALKVLEPLKVPLP 1127
>gi|289433569|ref|YP_003463441.1| transcription-repair coupling factor [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|289169813|emb|CBH26351.1| transcription-repair coupling factor [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 1178
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 232/551 (42%), Positives = 341/551 (61%), Gaps = 18/551 (3%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + P EF
Sbjct: 560 EGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSPDEEMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 618 EDAFPYQETDDQLRSIAEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K G ++I+VGTH
Sbjct: 677 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKSGTVDIVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y++LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVEYHDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVETITQKADEISA 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +AIAHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 856 MVPDARVAIAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 1032
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTE---SLRRQYGKEPYSMEILLKKLYVR 557
P YI +EM ++I L F E + ++G+ P +E L ++
Sbjct: 1033 PEYYITDGRQKIEMYKRF-----RNIEGLNDFEELQSDMIDRFGEYPEEVEYLFTMTELK 1087
Query: 558 RMAADIGITKI 568
A ++GI +
Sbjct: 1088 VHALEVGIESV 1098
>gi|345858302|ref|ZP_08810699.1| transcription-repair coupling factor [Desulfosporosinus sp. OT]
gi|344328618|gb|EGW39999.1| transcription-repair coupling factor [Desulfosporosinus sp. OT]
Length = 1191
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/538 (42%), Positives = 336/538 (62%), Gaps = 19/538 (3%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLK-QKRPPYPKNPAIAEFAAQFPYEPTPDQKK 96
T W + K+K + A++ M +DL++LY R Q N EF +FPY TPDQ +
Sbjct: 589 TEWHKVKSKTRSAVKDMAIDLVKLYAQREAIQGYAFSSDNVWQNEFEEKFPYAETPDQLQ 648
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
+ DV+ D+ R PMDRL+CGDVG+GKTEVALRA F V+ KQ VL PT +LA+QHF
Sbjct: 649 SIADVKADMM-RSRPMDRLLCGDVGYGKTEVALRAAFKAVTDSKQVAVLVPTTILAQQHF 707
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF YP I + +LSRF+S E++E L +K G +++IVGTH +L V + +LGL
Sbjct: 708 NTFKERFIGYP-ITIEMLSRFRSPKEQKEILQGLKDGRIDVIVGTHRILAEAVKFKDLGL 766
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGV KEK+ + K +VDVLTLSATPIPRTL+++L G RD S+I TPP R P
Sbjct: 767 LVIDEEQRFGVAHKEKLKTLKGNVDVLTLSATPIPRTLHMSLVGVRDMSVIETPPEGRYP 826
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T+++ F E V AI+ E+ RGGQVFYV R++ +++ +L Q P +AHGQ
Sbjct: 827 VQTYVTEFRPEVVRDAIRREIQRGGQVFYVHNRVEDMDQVTQYLSQLVPEARFGVAHGQM 886
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
LE M F + + +L+ T I+E+GLD+ N NT+I+ + +FGL+QLYQLRGRVGR
Sbjct: 887 REMALERVMLAFLEQEMDVLVSTTIIETGLDMPNVNTLIIDEADRFGLSQLYQLRGRVGR 946
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
++++A AYL Y + +L++ A +RL+A+ E E G GF++A +D+ IRG G + G QQ G
Sbjct: 947 SNRKAFAYLLYKPQKVLTEIAEKRLSAIREFTEFGAGFKIAMRDLEIRGAGNLIGAQQHG 1006
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYI------NHLEN 510
+ VG +L+ +ML E++ ++ V V S I++ ++ LP Y+ L
Sbjct: 1007 HLAAVGFELYSQMLKEAVQELRGETVEEVIEPS--IELQVDAFLPDPYVVDRQTKASLYQ 1064
Query: 511 PMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+ MV + E+ E + L ++G +E L++ + ++ +A+ + I +I
Sbjct: 1065 RLAMVRDEEQLGE--------MVDELVDRFGTPTREVEHLIEIIRIKLLASTLKIEQI 1114
>gi|331268338|ref|YP_004394830.1| transcription-repair coupling factor [Clostridium botulinum
BKT015925]
gi|329124888|gb|AEB74833.1| transcription-repair coupling factor [Clostridium botulinum
BKT015925]
Length = 1169
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 233/618 (37%), Positives = 380/618 (61%), Gaps = 25/618 (4%)
Query: 4 YLCNSCTCGSIMFC--------YDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMV 55
YL S T G ++ + +E K P+ ++KL + W + KTK K AI ++
Sbjct: 532 YLELSYTAGDTLYVPVEQLDLVQKYIGSEGKSPK-VNKLG-GSEWTKAKTKVKKAINEIA 589
Query: 56 VDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDR 114
+L++LY R K + K+ +F +FPY+ TPDQ A +++ D+ E MDR
Sbjct: 590 EELVKLYAIRSTLKGHKFNKDTIWQKQFEEEFPYDETPDQLTAIQEIKADM-ESGKAMDR 648
Query: 115 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 174
L+CGDVG+GKTEVA+RA F V GKQ L PT +LA+QH+ + +RF +P I + ++
Sbjct: 649 LLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAEQHYTNLVQRFCDFP-INIEMI 707
Query: 175 SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIA 234
SRF++ A+ + L+ +K G++++++GTH +L V + +LGLL+VDEEQRFGV KEKI
Sbjct: 708 SRFKTSAQVKNILNEVKLGNVDVLIGTHRILQKDVAFKDLGLLIVDEEQRFGVTHKEKIK 767
Query: 235 SFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK 294
+ K +VDVLTL+ATPIPRTL+++LTG RD S+I TPP ER P++T++ F+ + + AI
Sbjct: 768 NLKKNVDVLTLTATPIPRTLHMSLTGIRDISVIETPPEERYPVQTYVVEFNDQLIEDAIA 827
Query: 295 YELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIK 354
ELDR GQV++V R+ ++E +L + FP + IAHGQ R+LE+ M F +
Sbjct: 828 RELDRDGQVYFVYNRVGSIKEMAAYLAKMFPDSKVGIAHGQMPERELEKVMYDFMKKEYD 887
Query: 355 ILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLS 414
IL+CT I+E+GLDIQNANT+I+ D +FGL+QLYQLRGRVGR ++ A+AYL Y +L+
Sbjct: 888 ILVCTTIIETGLDIQNANTMIIYDSDKFGLSQLYQLRGRVGRTNRMAYAYLTYKKDKVLT 947
Query: 415 DQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL 474
+ A +RL A+++ ELG GF++A +D+ IRG G + G Q G + +VG DL+ ML +++
Sbjct: 948 EVAEKRLKAIKDFTELGSGFKIAMRDLEIRGAGNLIGAAQHGHMASVGYDLYCRMLEDTI 1007
Query: 475 ----SKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLM 530
++D+ + +D+ ++ +PS YI +E+ + ++ ++
Sbjct: 1008 KLVRGEIDKEPI------ETTVDLKVDAYIPSNYIRDEVQKIEVYKKIANIDSEE--SMI 1059
Query: 531 QFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMI 590
+ E L ++ P S++ L+ Y++ +A ++G+ ++ V +K + + + + ++
Sbjct: 1060 EIQEELEDRFSDIPSSVDNLINIAYIKTIANNLGVIEVKEKPTEVIVKFSNKEYINQNLV 1119
Query: 591 DSMTSEVHRNSLTFEGDQ 608
++ S+ +N + GD+
Sbjct: 1120 KAIMSKYSKNVMFKLGDE 1137
>gi|403670113|ref|ZP_10935279.1| transcription-repair coupling factor [Kurthia sp. JC8E]
Length = 1172
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 240/628 (38%), Positives = 375/628 (59%), Gaps = 21/628 (3%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E K+P+ L KL T W++ K K A+Q + DL++LY R + Y P + + +F
Sbjct: 555 EDKKPK-LHKLGGT-EWQKTKRKVSSAVQDIADDLIKLYAKREAEVGFAYSPDSDEMRQF 612
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPYE T DQ + +V+ D+ ER PMDRL+CGDVG+GKTEVA+RA + + GKQ
Sbjct: 613 ELAFPYEETDDQLRTIREVKADM-ERARPMDRLVCGDVGYGKTEVAIRAAYKAILDGKQV 671
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF + + VG+LSRF+++ ++ E + +K G ++I+VGTH
Sbjct: 672 AFLVPTTILAQQHFETLQERFQDFA-VNVGMLSRFRTRKQQNETIKGLKEGTVDIVVGTH 730
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V+Y +LGLL+VDEEQRFGV KE+I + + +VDVLTL+ATPIPRTL++++ G R
Sbjct: 731 RLLSKDVIYQDLGLLIVDEEQRFGVTHKERIKTLRTNVDVLTLTATPIPRTLHMSMVGVR 790
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T++ ++ V AI+ E+ RGGQVFY+ R+ + ++ +Q
Sbjct: 791 DLSVIETPPANRFPVQTYVMEYNGALVREAIEREMARGGQVFYLHNRVDDMAREVEKIQA 850
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P + AHG+ R+LE + F +G +L+ T I+E+G+DI NANT+IV +
Sbjct: 851 LVPEARVGHAHGKMTERELESMVYGFLEGEYDVLVTTTIIETGVDIPNANTLIVNNADHM 910
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR+++ A+AY Y +L++ + +RL A++E ELG GF++A +D+
Sbjct: 911 GLSQLYQLRGRVGRSNRVAYAYFMYKIDKVLTEVSEQRLQAIKEFTELGSGFKIAMRDLS 970
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI--NPRL 500
IRG G + G QQ G + +VG DL+ +ML E++ + V K + +I + + +
Sbjct: 971 IRGAGNLLGAQQHGFIDSVGFDLYSQMLEEAVKERQAESKGEVVVKEIDPEIVLPYDAYI 1030
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P EYI ++M + ++++ M + L ++G P E L++ +R A
Sbjct: 1031 PDEYIPDGYQKIQMYKRIKAIDGEEMYTEM--LDELHDRFGDMPSETERLMRIALMRAYA 1088
Query: 561 ADIGITKIYASGKMVGM---KTNMNK-KVFKMMIDSMTSEVHRN-SLTFEGDQIKAELLL 615
+G+ I K+V + K N+ K++ DSM + R +EG+Q L L
Sbjct: 1089 IQVGVESIKEKNKIVRIQFSKEGTNQIDGAKIVSDSM--QFGRAVGFLYEGNQ----LAL 1142
Query: 616 ELPREQLLNWI-FQCLAELYASLPALIK 642
+ ++ + F L +L SLP +K
Sbjct: 1143 TVDERKITGLLPFDLLEKLMKSLPDALK 1170
>gi|365875985|ref|ZP_09415510.1| transcription-repair coupling factor [Elizabethkingia anophelis Ag1]
gi|442588572|ref|ZP_21007383.1| transcription-repair coupling factor [Elizabethkingia anophelis R26]
gi|365756497|gb|EHM98411.1| transcription-repair coupling factor [Elizabethkingia anophelis Ag1]
gi|442561806|gb|ELR79030.1| transcription-repair coupling factor [Elizabethkingia anophelis R26]
Length = 1118
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/554 (40%), Positives = 337/554 (60%), Gaps = 24/554 (4%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYE 89
LSKL ++AW+ K K K ++++ DL++LY R K Y P E A F YE
Sbjct: 499 LSKLG-SSAWKSLKQKTKARVKQIAFDLIKLYAQRKSAKGFAYSPDGYMQNELEASFIYE 557
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ+KA +DV+ D+ + +T MDRLICGDVGFGKTEVA+RA F GKQ +L PT
Sbjct: 558 DTPDQEKATMDVKADM-QADTVMDRLICGDVGFGKTEVAIRAAFKAAVDGKQVALLVPTT 616
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA QH+ ER +P ++V L+RF++ +K+E L+ + G ++I++GTH L+G+ V
Sbjct: 617 ILAFQHYRSFKERLKDFP-VEVSYLNRFRTAKQKKETLEGLASGKIDIVIGTHQLVGASV 675
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL++DEE +FGV K+K+ + K ++D LTL+ATPIPRTL +L RD S+I T
Sbjct: 676 KFKDLGLLIIDEEHKFGVAIKDKLKTMKTNIDTLTLTATPIPRTLQFSLMAARDLSVIKT 735
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PPP R P+ T L F++E + AI YEL R GQV+++ RI+ L+E +Q+ P +
Sbjct: 736 PPPNRQPVDTKLVGFNEEILRDAISYELQRDGQVYFINNRIENLKEIAGLIQRLVPDARV 795
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
HGQ +QLE M F +G +L+ T IVESGLD+ NANTI + D Q+FG+A L+Q
Sbjct: 796 ITGHGQMDGKQLEANMMDFMEGKYDVLVSTTIVESGLDVPNANTIFINDAQRFGMADLHQ 855
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
+RGRVGR++++A YL P L+S + +RL A+E+ +LG GF +A KD+ IRG G +
Sbjct: 856 MRGRVGRSNRKAFCYLITPPMDLVSSDSRKRLEAIEQFSDLGSGFHIAMKDLEIRGAGDL 915
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKV------------DEHCVISVPYKSVQIDININ 497
G Q+G + +G D + +++ E+L ++ +E + K V ID ++
Sbjct: 916 LGGDQSGFINEMGFDTYQKIMQEALEELKDEDMEGLFQNEEERKKLFNSVKDVNIDTDLE 975
Query: 498 PRLPSEYINHLENPM---EMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
LP +Y+N E + + + + A E L +F L+ ++G P LLK +
Sbjct: 976 LMLPDDYVNSTEERLLLYQKLADVRNATE-----LNRFEYELKDRFGALPKEAINLLKSI 1030
Query: 555 YVRRMAADIGITKI 568
++ +AADIG KI
Sbjct: 1031 ELKWLAADIGFDKI 1044
>gi|170756439|ref|YP_001783179.1| transcription-repair coupling factor [Clostridium botulinum B1 str.
Okra]
gi|429246984|ref|ZP_19210264.1| transcription-repair coupling factor [Clostridium botulinum
CFSAN001628]
gi|169121651|gb|ACA45487.1| transcription-repair coupling factor [Clostridium botulinum B1 str.
Okra]
gi|428755990|gb|EKX78581.1| transcription-repair coupling factor [Clostridium botulinum
CFSAN001628]
Length = 1168
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 230/614 (37%), Positives = 373/614 (60%), Gaps = 26/614 (4%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K+P+ +SKL ++ W + K K K +I+++ DL++LY R K Y + +
Sbjct: 559 SEGKKPK-VSKLG-SSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGYKYSDDTVWQKQ 616
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F +FPYE TPDQ A D++RD+ E PMDRL+CGDVG+GKTEVA+RA F V GKQ
Sbjct: 617 FEEEFPYEETPDQLLAIEDIKRDM-ESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQ 675
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ +RFS +P I V ++SRF++ +E++ + IK G+++I++GT
Sbjct: 676 VAFLVPTTILAQQHYNNFKQRFSDFP-ITVDVISRFRTLSEQKATIKSIKEGNVDILIGT 734
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + + +LGLL++DEEQRFGVK KEK+ + K +VDVLTLSATPIPRTL+++L G
Sbjct: 735 HRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGV 794
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP ER P++T++ ++ + + +I E+ RGGQ+++V R++ + E ++
Sbjct: 795 RDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVYNRVESIHEMASYIS 854
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P + IAHGQ ++LE + F + ILI T I+E+G+DI+N NT+I+ D +
Sbjct: 855 KLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADK 914
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A+++ ELG GF++A KD+
Sbjct: 915 MGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALKDL 974
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDININ 497
IRG G + G Q G + ++G DL+ ML +++ +D+ V +++ I+
Sbjct: 975 EIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPV------ETSVELKID 1028
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+P+ YI +E+ + ++ + M E L ++ P S+ L+ Y+R
Sbjct: 1029 AYIPNTYIKDETQKIEVYKKIASIDSKEEF--MDIEEELEDRFSDIPISVYNLMNISYIR 1086
Query: 558 RMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV-----HRNSLTFEGDQ 608
+ + I +I V K+++ +K+ K+++D + EV + ++ +
Sbjct: 1087 SLGKKLDIEEIKEISNEVVFQFEDKSSLREKIVKIIMDKYSKEVAFKLNEKPAIGYNIKN 1146
Query: 609 IKAELLLELPREQL 622
IK E LL + R L
Sbjct: 1147 IKKEQLLPIIRNFL 1160
>gi|408419796|ref|YP_006761210.1| transcription-repair-coupling factor Mfd [Desulfobacula toluolica
Tol2]
gi|405107009|emb|CCK80506.1| Mfd: transcription-repair-coupling factor [Desulfobacula toluolica
Tol2]
Length = 1164
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/546 (41%), Positives = 336/546 (61%), Gaps = 15/546 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHR-----LKQKRPPYPKNPAIAEFAAQFPYEPT 91
+ AW + K K K ++K+ DL+ LY R RP N +F A FPYE T
Sbjct: 571 SKAWIKSKAKAKEEVEKLAADLLNLYAKRKVNNGFSFSRPDNYYN----DFEAAFPYEET 626
Query: 92 PDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 151
DQ KA DV D+ E E PMDRL+CGDVG+GKTEVA+RA F V+ KQ V+ PT +L
Sbjct: 627 RDQLKAIDDVHLDM-ESEIPMDRLVCGDVGYGKTEVAIRAAFKAVNDAKQVAVVVPTTIL 685
Query: 152 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVY 211
A+QH ERF++YP + + LSRF+++ E+ + I+ G ++I++GTH LL + +
Sbjct: 686 AEQHLSTFRERFAQYP-VHIECLSRFRTRKEQARIIKAIRSGLVDIVIGTHRLLQKDIDF 744
Query: 212 NNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPP 271
+LGLLV+DEEQRFGVK KE + + SVDVL L+ATPIPRTL+++LTG RD S+I+TPP
Sbjct: 745 KSLGLLVIDEEQRFGVKHKEALKKKRSSVDVLALTATPIPRTLHMSLTGMRDISVITTPP 804
Query: 272 PERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAI 331
+R PI +++S + V A+K EL R GQ+F+V IK + + L++ P IA+
Sbjct: 805 ADRQPIISYISKYEDPIVKDAVKRELSRNGQIFFVHNNIKTIFKVSQNLEKLVPEARIAV 864
Query: 332 AHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLR 391
AHG+ +LE+ M KF I +L+CT I+ESGLDI +ANT+I+ + FGL+Q+YQLR
Sbjct: 865 AHGRLSETELEKVMLKFVNLEIDVLVCTTIIESGLDIPSANTMIINKAEHFGLSQIYQLR 924
Query: 392 GRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFG 451
GR+GR D +A+AYLF D+S L+ A +RLAAL E ++LG GFQ+A KD+ IRG GT G
Sbjct: 925 GRIGRGDHQAYAYLFVSDESRLTKDAKKRLAALMEYKDLGSGFQIAMKDLQIRGAGTALG 984
Query: 452 EQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENP 511
Q+G + VG D+F ++L +++ + I P + +I+ +++ P +YI +E
Sbjct: 985 ASQSGHIAAVGYDMFLKLLDQAVHDLKGEDNIE-PLEP-EINASMSSGFPDDYIESVEQR 1042
Query: 512 MEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYAS 571
+ + + + + + L +YGK P E +L K+ +R G+ ++ S
Sbjct: 1043 LTVYRRLSRITM--VSDISDMKKELTDRYGKLPKEAENMLLKIMLRVYCIKAGVQRLDIS 1100
Query: 572 GKMVGM 577
++ +
Sbjct: 1101 PNILTL 1106
>gi|225028227|ref|ZP_03717419.1| hypothetical protein EUBHAL_02499 [Eubacterium hallii DSM 3353]
gi|224954539|gb|EEG35748.1| transcription-repair coupling factor [Eubacterium hallii DSM 3353]
Length = 1187
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 242/616 (39%), Positives = 359/616 (58%), Gaps = 14/616 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
N + R L+KL T WE+ K++ + +Q DL++LY R ++ Y K+ E
Sbjct: 574 NLSARKPKLNKLGGT-EWEKTKSRVRSQVQIAAQDLVKLYAERQAKEGYAYGKDTVWQKE 632
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPYE T DQ A D +RD+ E MDRLICGDVG+GKTEVA+RA F V KQ
Sbjct: 633 FEELFPYEETEDQLSAIEDTKRDM-ESHRIMDRLICGDVGYGKTEVAIRAAFKAVMDSKQ 691
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+ L PT +LA+QH++ ER YP +++ +LSRF + E++ D +K+G ++I++GT
Sbjct: 692 VVYLVPTTILAQQHYNSFKERMEHYP-VEIAMLSRFCTPKEQKRIFDGLKNGTIDIVIGT 750
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + Y NLGLL++DEEQRFGVKQKEKI K VDVL LSATPIPRTL+++L G
Sbjct: 751 HKVLSKNIKYKNLGLLIIDEEQRFGVKQKEKIKQLKKDVDVLALSATPIPRTLHMSLAGI 810
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S++ PP +R I+T++ +++E V AI+ EL RGGQV+YV R+ ++E LQ
Sbjct: 811 RDMSVLEVPPVDRRAIQTYVMEYNEELVREAIERELGRGGQVYYVYNRVNNIDEVAAGLQ 870
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P + AHGQ RQLE M F I +L+ T I+E+GLDI N NT+I+QD Q
Sbjct: 871 RLLPNATVEYAHGQMGERQLETIMSGFINKEIDVLVSTTIIETGLDIPNVNTMIIQDAQL 930
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
FGL+QLYQLRGRVGR+++ A+A+L Y S+L ++A +RL A+ E +LG GF++A +D+
Sbjct: 931 FGLSQLYQLRGRVGRSNRTAYAFLMYRRNSILKEEAEKRLKAIREFTDLGSGFKIAMRDL 990
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL--SKVDEHCVISVPYKSVQIDININPR 499
IRG G + G +Q+G + +VG DL+ +ML E++ K ++ V + + ID++I+
Sbjct: 991 EIRGAGNLLGAEQSGHMESVGYDLYCKMLNEAVLTMKGEQQEVDTF---TTSIDLSIDAY 1047
Query: 500 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 559
+P YI + Q+ M E + +YG P + L+ +R
Sbjct: 1048 IPETYIKSESEKLSWYKRIATIETQEESEDM--IEEMTDRYGDTPAPLIRLMDVALLREE 1105
Query: 560 AADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTF--EGDQIKAELLLEL 617
A + I G + N KV ID + +RN + E + + +
Sbjct: 1106 AHQAWLLSIEQKGSKILFTMNPRAKVRVEEIDGFLKQ-YRNKMKIKPEANPVFVFESTGI 1164
Query: 618 PREQLLNWIFQCLAEL 633
P++ LL + + + E+
Sbjct: 1165 PKKDLLAKVREIIGEI 1180
>gi|218777910|ref|YP_002429228.1| transcription-repair coupling factor [Desulfatibacillum alkenivorans
AK-01]
gi|218759294|gb|ACL01760.1| transcription-repair coupling factor [Desulfatibacillum alkenivorans
AK-01]
Length = 1179
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 220/539 (40%), Positives = 339/539 (62%), Gaps = 13/539 (2%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELY-LHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKA 97
AWE+ K++ K +++K+ +L++LY + ++KQ P + AEF A F YE TPDQ KA
Sbjct: 586 AWEKVKSRVKKSVEKIAGELLKLYAVRKVKQGYAFSPTDSYFAEFEANFEYEETPDQAKA 645
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157
DV D+ R PMDRLICGDVG+GKTEVALRA F VS KQ + PT +L++QH+
Sbjct: 646 INDVLADMENRR-PMDRLICGDVGYGKTEVALRASFKAVSDSKQTAFVTPTTILSEQHYR 704
Query: 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217
+R+ YP +K+ L+RF+ AEK+E L +++G ++I++GTHS+L V + +L L+
Sbjct: 705 TFLKRYEGYP-VKIACLNRFRKAAEKKEILKGLENGDIDIVIGTHSVLQKSVQFKDLRLV 763
Query: 218 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 277
++DEEQRFGVK KE + + +VDVL L+ATPIPRTL++++ G RD ++I+TPP +R PI
Sbjct: 764 IIDEEQRFGVKHKETLKKIRATVDVLALTATPIPRTLHMSMVGIRDITVINTPPEQRRPI 823
Query: 278 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 337
T++S F + AI+ EL R GQVF+V R++ ++ L++ P + +AHGQ
Sbjct: 824 TTYVSKFDEVIAAEAIRAELARKGQVFFVHNRVQSIDAMAGRLKRLVPEARVGVAHGQMS 883
Query: 338 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 397
LE+ M KF I +L+CT I+ESGLDI ANTI++ FGLAQ+YQLRGRVGR
Sbjct: 884 ETMLEKVMIKFVNHEIDLLVCTAIIESGLDIPAANTILINRADMFGLAQIYQLRGRVGRG 943
Query: 398 DKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 457
D +A+AYLF PD+S+L+ A RL L E +LG GF +A D+ IRG GTI G Q+G
Sbjct: 944 DDQAYAYLFIPDESVLTRDAQRRLKVLMEHSDLGAGFAIAMSDLQIRGGGTILGSAQSGQ 1003
Query: 458 VGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPM---EM 514
+ VG +++ +++ ++ ++ S P +I+++ + +P YI ++ +
Sbjct: 1004 IAAVGYEMYLQLMETAIGQLKGEG--SAPPLDPEINVDFSAFIPEWYIPDVDQRLLAYRR 1061
Query: 515 VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
++ EK ++ + F++ ++ ++GK P L K+ + + D G+ K+ +GK
Sbjct: 1062 LSRMEKVSD-----VGAFSKEMQDRFGKVPQETNQLFFKIMFKILCRDAGVKKMDMAGK 1115
>gi|418635176|ref|ZP_13197560.1| transcription-repair coupling factor [Staphylococcus lugdunensis
VCU139]
gi|374842125|gb|EHS05572.1| transcription-repair coupling factor [Staphylococcus lugdunensis
VCU139]
Length = 1173
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 352/559 (62%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E K P+ L+KL + W++ K K + +++ + +L+ LY R + ++ A
Sbjct: 551 YVASEDKSPK-LNKLG-GSEWKKTKAKVQQSVEDIAEELIALYKEREMSVGYQFGEDTAE 608
Query: 80 AE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ E + PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QQAFELDFPYELTPDQAKSIEEIKADM-ELQKPMDRLLCGDVGYGKTEVAIRAAFKAVME 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E + + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLVSRFRTAKEVRKTKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLSKDIRYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA+AHGQ R LEETM F G IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPEASIAVAHGQMTERDLEETMLSFINGDYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLTETAEDRLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ + V + +N++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGITEETQDTPEVGMVLNLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K + L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQNEQAKIEIYKKLRKVENE--AQLDDIRDELMDRFNDYPIEVERLLDSVQIKI 1084
Query: 559 MAADIGITKIYASGKMVGM 577
A G+T I GK V +
Sbjct: 1085 HALRAGVTLIKDQGKTVDI 1103
>gi|336112720|ref|YP_004567487.1| transcription-repair coupling factor [Bacillus coagulans 2-6]
gi|335366150|gb|AEH52101.1| transcription-repair coupling factor [Bacillus coagulans 2-6]
Length = 1178
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 229/611 (37%), Positives = 372/611 (60%), Gaps = 12/611 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + +IQ + DL++LY R + + P E
Sbjct: 555 SEGKEPK-LYKLG-GSEWKRVKRKVQSSIQDIADDLVKLYAEREASRGFAFSPDGDMQRE 612
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ ++ +++RD+ E+E PMDRL+CGDVG+GKTEVA+RA F V GKQ
Sbjct: 613 FEAAFPYKETEDQLRSIQEIKRDM-EKEKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQ 671
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QHF+ V+ERF YP IKVGLLSRF+++ E+ E + +++G +++++GT
Sbjct: 672 VAMLVPTTILAQQHFETVTERFHGYP-IKVGLLSRFRTRKEQNETIKGLRNGTIDMVIGT 730
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL + + +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 731 HRLLSKDIQFRDLGLLIIDEEQRFGVSHKEKIKKLKTNVDVLTLTATPIPRTLHMSMVGV 790
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ + V AI+ EL R GQV+++ RI+ +E + +
Sbjct: 791 RDLSVIETPPENRFPVQTYVLEYNDQMVREAIERELARDGQVYFLYNRIEDIERKAEEIA 850
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P +A AHG+ QLE + F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 851 RLVPDARVAYAHGRMTESQLETVILGFLEGEYDVLVTTTIIETGVDIPNVNTLIVNDADR 910
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ + +RL A++E ELG GF++A +D+
Sbjct: 911 MGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLAEASEKRLQAIKEFTELGSGFKIAMRDL 970
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ ++++ I+ +P
Sbjct: 971 SIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEARKGTDGEEEKLPPFEVELEIDAYIP 1030
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI +EM + + + + E + ++G+ P + L ++ A
Sbjct: 1031 DAYIKDGYQKIEMYKRFRGI--ETLEDVEELKEEMIDRFGEYPQQVSDLFTIAEMKVYAK 1088
Query: 562 DIGITKIYASGKMVG--MKTNMNKKVFKMMIDSMTSEVHRNS-LTFEGDQIKAELLLELP 618
+ ++ I + +++ M +K+V + + + R++ EG+Q+K + L++
Sbjct: 1089 EAMLSSIKQNKQLITILMSEKGSKQVNGPKVVDIVRKYGRSAGFGMEGNQLK--ITLDIK 1146
Query: 619 REQLLNWIFQC 629
+ + W++ C
Sbjct: 1147 KSKGHEWLYTC 1157
>gi|404498387|ref|YP_006722493.1| transcription-repair coupling factor [Geobacter metallireducens
GS-15]
gi|418067074|ref|ZP_12704426.1| transcription-repair coupling factor [Geobacter metallireducens RCH3]
gi|78195985|gb|ABB33752.1| transcription-repair coupling factor [Geobacter metallireducens
GS-15]
gi|373559435|gb|EHP85732.1| transcription-repair coupling factor [Geobacter metallireducens RCH3]
Length = 1158
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/526 (43%), Positives = 327/526 (62%), Gaps = 17/526 (3%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYEPTPDQKK 96
T+WE+ K K + A+Q+M +L+++Y R L + P + EF A F YE T DQ
Sbjct: 568 TSWEKAKGKARAAVQEMAGELLQIYAARQLHEGHAFSPPDDLYREFEASFAYEETSDQMS 627
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A +DV D+T + PMDRL+CGDVG+GKTEVA+R F V GKQ VL PT VLA+QH
Sbjct: 628 AIMDVIGDMTSAK-PMDRLVCGDVGYGKTEVAMRGAFKAVMDGKQVAVLVPTTVLAQQHL 686
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ R YP + V +LSRF++ E++E L+ +K G +++I+GTH LL S V + +LGL
Sbjct: 687 ETFKARLGAYP-VTVEMLSRFRTPKEQKEILEKVKKGAIDVIIGTHRLLQSDVTFKDLGL 745
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L+VDEEQRFGV KEK+ +K VD+LTL+ATPIPRTLY+++ G RD S+I TPP +RL
Sbjct: 746 LIVDEEQRFGVTHKEKLKKYKAVVDILTLTATPIPRTLYMSMMGIRDLSIIDTPPVDRLA 805
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
+KT ++ S + + A+ EL RGGQ+F+V R++ + + L++ P IA+ HGQ
Sbjct: 806 VKTFVARSSDDLIREAVMRELRRGGQIFFVHNRVQSIMNWAEHLRRIVPEAKIAVGHGQM 865
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE+ M F G +L+CT I+ESGLDI NANT+I+ FGLAQLYQLRGRVGR
Sbjct: 866 DEGELEKVMLGFMHGETNLLLCTTIIESGLDIPNANTLIIDRADTFGLAQLYQLRGRVGR 925
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ + A+AYL P + +S A ERL ++E ELG GF+LA D+ IRG G I G +Q+G
Sbjct: 926 SKQRAYAYLLIPGEGAISSDARERLKIIQELTELGAGFRLATHDLEIRGAGDILGAKQSG 985
Query: 457 DVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRLPSEYINHLENPM-- 512
++ VG DL+ E+L E++ K +E P +I++ I +P +Y+ +
Sbjct: 986 NIAAVGFDLYTELLEEAIQNLKGEERLERVEP----EINLRIPAFVPEDYVREPNQRLII 1041
Query: 513 -EMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+ + +AE E D + L ++GK P + LL+ + +R
Sbjct: 1042 YKKLTQAESEEEVD-----EVMAELVDRFGKLPLAATYLLEVMKLR 1082
>gi|373495519|ref|ZP_09586102.1| transcription-repair coupling factor [Eubacterium infirmum F0142]
gi|371964656|gb|EHO82167.1| transcription-repair coupling factor [Eubacterium infirmum F0142]
Length = 1144
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/547 (40%), Positives = 346/547 (63%), Gaps = 8/547 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYE 89
+SKLS W+ KTK ++AI +M +L++LY R K + K+ EF A F Y+
Sbjct: 534 VSKLS-GDEWKVAKTKARLAIAEMTDELIKLYADRKASKGFAFSKDTVWQKEFEAYFNYQ 592
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
T DQ + +++RD+ E E PMDRL+CGDVG+GKTEVA RAIF +S GKQA +L PT
Sbjct: 593 ETDDQLTSIDEIKRDM-ESELPMDRLLCGDVGYGKTEVAARAIFKCISEGKQAAMLVPTT 651
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA QH++ + ERFS +P + +LSRF+S ++++ +D +K G ++ ++GTH LL +
Sbjct: 652 ILANQHYNSLKERFSNFP-FTIDMLSRFRSDEQQDKIVDGLKKGRIDFVIGTHRLLSDDI 710
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
Y +LGLLV+DEEQRFGV KEK+ K ++DVLTLSATPIPRTL ++LTG +D SLI+
Sbjct: 711 KYKDLGLLVIDEEQRFGVAHKEKLKKLKSNIDVLTLSATPIPRTLNMSLTGIKDMSLITE 770
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP +R P++T++ + I ELDR GQV+ V R+KG+ + +Q +I
Sbjct: 771 PPGDRYPVQTYVLEQDDIVMREIITRELDRDGQVYIVFNRVKGINRLAEKIQSLVSDAEI 830
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+ HGQ + LE M++F G +L+ T I+ESG+DI NANTIIV D + GLAQLYQ
Sbjct: 831 VVGHGQMNEKSLESVMQRFISGDADVLVATTIIESGIDIPNANTIIVIDADKCGLAQLYQ 890
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR DK A+AYL Y +L++ A +RL A++E E G GF++A +D+ IRG G +
Sbjct: 891 LRGRVGRTDKIAYAYLMYQKNKVLTEVAEKRLKAIKEFTEFGSGFKVAMRDLEIRGAGNV 950
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G +Q+G + N+G +L+ +++ +++ + V P + + I++++ +P+ YI++
Sbjct: 951 LGAEQSGHMMNIGYELYCKLVDDAVRRAKGENVPE-PAEEINIELDVAANIPNWYIDNET 1009
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
++M + + ++ + + L ++G P L+ +R ++ ++G++ I+
Sbjct: 1010 LKLQMYKKIATVSTRE--DSEEIIDELLDRFGDLPRETLNLIAVSMIRALSGNVGVSNIH 1067
Query: 570 A-SGKMV 575
+GK+V
Sbjct: 1068 EQAGKVV 1074
>gi|304405853|ref|ZP_07387511.1| transcription-repair coupling factor [Paenibacillus curdlanolyticus
YK9]
gi|304345096|gb|EFM10932.1| transcription-repair coupling factor [Paenibacillus curdlanolyticus
YK9]
Length = 1177
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/536 (41%), Positives = 339/536 (63%), Gaps = 13/536 (2%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNPAIAEFAAQFPYEPTPDQKK 96
W R KTK + +++ + +L++LY R Q P + P EF A FPY+ T DQ +
Sbjct: 561 WARVKTKVRSSVKDIADELIKLYADR--QASPGFAFGQDTPYQQEFEAMFPYDETRDQLR 618
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A +++ D+ E PMDRL+CGDVG+GKTEVA+RA F GKQ +L PT +LA+QHF
Sbjct: 619 AIGEIKADM-EMSRPMDRLLCGDVGYGKTEVAVRAAFKAAIEGKQVAILVPTTILAQQHF 677
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERFS YP V +LSRF+S+ E+ E + IK G ++I++GTH LL VV+ +LGL
Sbjct: 678 ETFRERFSGYP-FNVQVLSRFRSRKEQNETMKGIKAGTVDIVIGTHRLLSQDVVFKDLGL 736
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P
Sbjct: 737 LIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFP 796
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T++ +S V +++ EL RGGQV+Y+ R++G+ + D ++ P +A+ HGQ
Sbjct: 797 VQTYVLEYSAALVRESVERELARGGQVYYLYNRVQGIHQMADQIKALVPDARVAVGHGQM 856
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
++LE+T+ F G +L+ T+I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR
Sbjct: 857 SEQELEKTILDFLDGESDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQLRGRVGR 916
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+++ A+AY Y +L++ A +RL +++E ELG GF++A +D+ IRG G + G +Q G
Sbjct: 917 SNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLAIRGAGNLLGAEQHG 976
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYK----SVQIDININPRLPSEYINHLENPM 512
+ +VG DL+ +ML + ++ + P + + ID++++ LPS+YI +
Sbjct: 977 FIASVGFDLYSQMLADEVAARKAQLDGAAPVEERKVATVIDLSLDAYLPSDYIYDSIQKI 1036
Query: 513 EMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
E+ + AA + I + L ++G P ++E LL ++ A+ GI +I
Sbjct: 1037 EIYKKV--AAIRQIEETEDLRDELVDRFGDLPLAVENLLAVARLKAYGAEYGIEQI 1090
>gi|354807947|ref|ZP_09041396.1| transcription-repair coupling factor [Lactobacillus curvatus CRL 705]
gi|354513568|gb|EHE85566.1| transcription-repair coupling factor [Lactobacillus curvatus CRL 705]
Length = 1174
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 234/627 (37%), Positives = 379/627 (60%), Gaps = 25/627 (3%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEF 82
E K P+ ++KL W++ K+K I+ + DL+ELY R +K +PK+ + AEF
Sbjct: 554 EAKTPK-INKLGGG-EWQKTKSKVSAKIEDIADDLIELYAQREAEKGFAFPKDDQLQAEF 611
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
QFPY T DQ ++ +++ D+ ER PMDRL+ GDVGFGKTEVALRA F V AGKQ
Sbjct: 612 EGQFPYPETDDQLRSTAEIKHDM-ERVRPMDRLLVGDVGFGKTEVALRAAFKAVEAGKQV 670
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QH++ + RF+ + +++GLLSRF+++ E L + G ++I++GTH
Sbjct: 671 AFLVPTTILAQQHYENMLTRFADFA-VEIGLLSRFKTRKEVTATLKGLAEGKVDIVIGTH 729
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL + + +LGLL+VDEEQRFGVK KE++ K VDVLTL+ATPIPRTL++++ G R
Sbjct: 730 RLLSQDIKFKDLGLLIVDEEQRFGVKHKERLKQLKAQVDVLTLTATPIPRTLHMSMLGVR 789
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R PI+T++ + + AI+ EL+R GQVFY+ R+ +E +D +Q
Sbjct: 790 DLSVIETPPTNRYPIQTYVMEQNAGAMREAIERELERNGQVFYLHNRVSDIERTVDEIQA 849
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P + AHGQ QLE + F QG +L+ T I+E+G+D+ N NT+IV+D +
Sbjct: 850 LVPEATVGFAHGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNVNTMIVEDADHY 909
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGR+GR+ + A+ Y Y +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 910 GLSQLYQLRGRIGRSSRIAYGYFMYKPDKVLTEVSEKRLQAIKDFTELGSGFKIAMRDLS 969
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G + G+QQ G + +VG DL+ +ML E+++K V++ + +ID+ + LP
Sbjct: 970 IRGAGNLLGKQQHGFIDSVGFDLYSQMLGEAVAKKQGKQVVA--KTNAEIDLKLEAYLPD 1027
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
YIN +E+ + + + +Q L ++G P + LL ++ A D
Sbjct: 1028 AYINDQRQKIEIYKRIRQMDSEAAFDEIQ--ADLIDRFGDYPDQVANLLAIGQLKMNADD 1085
Query: 563 IGITKIYASGKMV-------GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLL 615
I I + +++ G + +++F +++++ + ++ FE +Q+ +L++
Sbjct: 1086 ALIETIKQTKEIIQVTLSAKGSRLVSGEQIF----EALSTTRLKATVGFEQEQLSVKLVI 1141
Query: 616 ELPREQLLNWIFQCLAELYASLPALIK 642
+ P+ Q +W L+E+ + +L+K
Sbjct: 1142 Q-PKMQPADW----LSEVATFVTSLLK 1163
>gi|289450268|ref|YP_003474746.1| transcription-repair coupling factor [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184815|gb|ADC91240.1| transcription-repair coupling factor [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 1241
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 236/592 (39%), Positives = 352/592 (59%), Gaps = 16/592 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
+E + P+ LS+L T W++ K K + +++K+ DL++LY R K K +P E
Sbjct: 617 SEQQNPK-LSRLGGTD-WQKLKNKARDSVKKLAFDLVKLYAERRKIKGYKFPPETTWERE 674
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
FA FP+E T DQ + +V D+ E + MDRL+CGDVGFGKTEVA RA+F V GKQ
Sbjct: 675 FAESFPFEETDDQLRCIKEVSADM-ESDKVMDRLLCGDVGFGKTEVAFRALFKAVMGGKQ 733
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
A +LAPT VLA+QH++ R + +P I+VGLLSRF + A + + L + G++++++GT
Sbjct: 734 AALLAPTTVLAQQHYENFMNRINGFP-IRVGLLSRFANDAMQHKTLSGLATGNIDVVIGT 792
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V + LGLL++DEEQRFGV+ KEK+ VDVLTLSATPIPRTL++AL+G
Sbjct: 793 HRLLSKDVKFKKLGLLIIDEEQRFGVEHKEKLKVNYQGVDVLTLSATPIPRTLHMALSGI 852
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I P +R + T++ + VI AI E R GQVFY+ G++ ++ LQ
Sbjct: 853 RDISVIEEAPLDRRSVLTYVMEYDPAIVIDAINREFSRHGQVFYLYNNTAGIDAKVNELQ 912
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+A PG IA HG+ +QLE+ + F G IL+CT I+ESG+D+ N NT+IV++ +
Sbjct: 913 EALPGARIAAGHGKMSEKQLEQVINDFYAGETDILVCTTIIESGIDMPNVNTLIVENADR 972
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GLAQLYQLRGRVGR+ ++A+AY+ Y +L++ A +RL A+ + ELG GF++A KD+
Sbjct: 973 LGLAQLYQLRGRVGRSGRQAYAYITYRRDKVLTEVAEKRLTAIRDFTELGSGFKIAMKDL 1032
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHC--------VISVPYKSVQID 493
+RG G I G +Q G + VG D++ ML E ++K + S+P +D
Sbjct: 1033 EVRGAGNILGGEQHGQMAAVGYDMYCRMLDEEIAKAETELNGEAGSKPKNSLPAVETIVD 1092
Query: 494 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553
I ++ LP E+I M+M A E D + L ++G+ P + +L
Sbjct: 1093 IPVDAYLPREFIADEGQRMDMYKRL-TAIESD-RDYHDVIDELLDRFGELPPEVTVLAAI 1150
Query: 554 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDS-MTSEVHRNSLTF 604
Y+R MA+ GI ++ + M+ +KV +I + M + + + F
Sbjct: 1151 SYIRHMASKAGIERVSRQDDRIIMRLPAGQKVNMPLIAAIMAQQSYSGEMNF 1202
>gi|399030726|ref|ZP_10731057.1| transcription-repair coupling factor Mfd [Flavobacterium sp. CF136]
gi|398071125|gb|EJL62395.1| transcription-repair coupling factor Mfd [Flavobacterium sp. CF136]
Length = 1120
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/562 (39%), Positives = 341/562 (60%), Gaps = 18/562 (3%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQF 86
P + KL + AW+ K K K ++ + +L++LY R +K + P + E + F
Sbjct: 500 PPKIYKLG-SNAWKILKQKTKARVKHIAFNLIQLYAKRRLEKGFQFAPDSYLQNELESSF 558
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
YE TPDQ K+ +V+ D+ E + PMDRL+CGDVGFGKTEVA+RA F V KQ VL
Sbjct: 559 IYEDTPDQTKSTQEVKADM-ESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDNSKQVAVLV 617
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA QH+ +ER P + VG L+RF++ +K + L + G L+I++GTH L+
Sbjct: 618 PTTILAYQHYRTFTERLKDMP-VSVGYLNRFRTAKQKAQTLKDLAEGKLDIVIGTHQLVN 676
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
VV+ +LGLL+VDEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L RD S+
Sbjct: 677 KNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIPRTLQFSLMAARDLSV 736
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPPP R PI+T++ +F++E + AI YE+ R GQVF++ RI+ ++E +Q+ P
Sbjct: 737 ITTPPPNRYPIETNVVSFNEEIIRDAISYEIQRNGQVFFINNRIENIKEVAGMIQRLVPN 796
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+ I HGQ +LEE M F G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 797 ARVGIGHGQMEGAKLEELMLGFMNGDFDVLVATTIIESGLDVPNANTIFINNANNFGLSD 856
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+Q+RGRVGR++K+A Y P S +++ A +R+ ALE+ ELG GF +A KD+ IRG
Sbjct: 857 LHQMRGRVGRSNKKAFCYFICPPYSSMTEDARKRIQALEQFSELGSGFNIAMKDLEIRGA 916
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKV----------DEHCVISVPY-KSVQIDIN 495
G + G +Q+G + +G D + +++ E++ ++ +E+ + + Y K +QID +
Sbjct: 917 GDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYPEENNIDTKEYVKDLQIDAD 976
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
P EYIN++ + + NE A +D L +F L ++G P LL +
Sbjct: 977 FELLFPDEYINNVSERLVLYNEL--GAIKDEAGLQEFERKLIDRFGPLPKQATALLNSIR 1034
Query: 556 VRRMAADIGITK-IYASGKMVG 576
++ +A +GI K + GKM+G
Sbjct: 1035 IKWIATRVGIEKLVLKQGKMIG 1056
>gi|46580312|ref|YP_011120.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449729|gb|AAS96379.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
Hildenborough]
Length = 1160
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 241/546 (44%), Positives = 338/546 (61%), Gaps = 21/546 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
F+ + +P +L +L AW+ K K + AI+K+ DL+E+Y +R K Y P
Sbjct: 544 FKGADDTKP-SLDRLG-GGAWQSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPIGEL 601
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF A F +E TPDQ +A DV D+ ++ PMDRL+CGDVGFGKTEVALRA F S
Sbjct: 602 YREFEASFGFEETPDQARAIQDVLEDM-DKPVPMDRLVCGDVGFGKTEVALRAAFRAASE 660
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G+Q +L PT VLA+QH+ R + +P + VG+LSRF SK ++ E L GH++I+
Sbjct: 661 GRQVALLCPTTVLAEQHYQTFRSRLAGFP-VNVGMLSRFVSKQKQTEVLAAAAKGHVDIL 719
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL V NLGLLV+DEEQRFGV+ KEK+ F+ +VD LTL+ATPIPRTL L++
Sbjct: 720 IGTHRLLSDDVRLPNLGLLVLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLSM 779
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ S+I T PPER P+ T L + S ++ E+ R GQVF+V R++GLE +
Sbjct: 780 SGIRELSVIETAPPERKPVATALIERDDAALKSILEREIAREGQVFWVHNRVQGLERTTE 839
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
++++ P + +AHGQ R LEETM +F G + +L+CT IVESGLD ANT+IV
Sbjct: 840 YVRKLVPDARVGMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVDQ 899
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q FGL QLYQLRGRVGR+D++A+A PD LSD A ER+ + + LG GFQ+A
Sbjct: 900 AQMFGLGQLYQLRGRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVAM 959
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ- 497
+D+ IRG G I GE Q+G + VG++LF EML E+++++ P +SV+ ++NI
Sbjct: 960 EDLRIRGAGNILGEAQSGHMTRVGLELFLEMLEEAVTRLKGDP----PRESVETELNIGI 1015
Query: 498 -PRLPSEYINHLENPME----MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 552
+P YI + + + + + AA+QDI M R +YG P +E L
Sbjct: 1016 PAHIPEGYIEDARDRLRFYKALSSATDAAAQQDIEMEM------RDRYGVFPPELETFLA 1069
Query: 553 KLYVRR 558
L ++R
Sbjct: 1070 LLVLKR 1075
>gi|120602306|ref|YP_966706.1| transcription-repair coupling factor [Desulfovibrio vulgaris DP4]
gi|387153261|ref|YP_005702197.1| transcription-repair coupling factor [Desulfovibrio vulgaris RCH1]
gi|120562535|gb|ABM28279.1| transcription-repair coupling factor [Desulfovibrio vulgaris DP4]
gi|311233705|gb|ADP86559.1| transcription-repair coupling factor [Desulfovibrio vulgaris RCH1]
Length = 1159
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 241/546 (44%), Positives = 338/546 (61%), Gaps = 21/546 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
F+ + +P +L +L AW+ K K + AI+K+ DL+E+Y +R K Y P
Sbjct: 543 FKGADDTKP-SLDRLG-GGAWQSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPIGEL 600
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF A F +E TPDQ +A DV D+ ++ PMDRL+CGDVGFGKTEVALRA F S
Sbjct: 601 YREFEASFGFEETPDQARAIQDVLEDM-DKPVPMDRLVCGDVGFGKTEVALRAAFRAASE 659
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G+Q +L PT VLA+QH+ R + +P + VG+LSRF SK ++ E L GH++I+
Sbjct: 660 GRQVALLCPTTVLAEQHYQTFRSRLAGFP-VNVGMLSRFVSKQKQTEVLAAAAKGHVDIL 718
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL V NLGLLV+DEEQRFGV+ KEK+ F+ +VD LTL+ATPIPRTL L++
Sbjct: 719 IGTHRLLSDDVRLPNLGLLVLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLSM 778
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R+ S+I T PPER P+ T L + S ++ E+ R GQVF+V R++GLE +
Sbjct: 779 SGIRELSVIETAPPERKPVATALIERDDAALKSILEREIAREGQVFWVHNRVQGLERTTE 838
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
++++ P + +AHGQ R LEETM +F G + +L+CT IVESGLD ANT+IV
Sbjct: 839 YVRKLVPDARVGMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVDQ 898
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q FGL QLYQLRGRVGR+D++A+A PD LSD A ER+ + + LG GFQ+A
Sbjct: 899 AQMFGLGQLYQLRGRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVAM 958
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ- 497
+D+ IRG G I GE Q+G + VG++LF EML E+++++ P +SV+ ++NI
Sbjct: 959 EDLRIRGAGNILGEAQSGHMTRVGLELFLEMLEEAVTRLKGDP----PRESVETELNIGI 1014
Query: 498 -PRLPSEYINHLENPME----MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 552
+P YI + + + + + AA+QDI M R +YG P +E L
Sbjct: 1015 PAHIPEGYIEDARDRLRFYKALSSATDAAAQQDIEMEM------RDRYGVFPPELETFLA 1068
Query: 553 KLYVRR 558
L ++R
Sbjct: 1069 LLVLKR 1074
>gi|126653275|ref|ZP_01725386.1| transcription-repair coupling factor [Bacillus sp. B14905]
gi|126589949|gb|EAZ84078.1| transcription-repair coupling factor [Bacillus sp. B14905]
Length = 1169
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/557 (40%), Positives = 342/557 (61%), Gaps = 8/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
+ +E + P+ L KL W++ K K A+Q + DL++LY R +K + P N
Sbjct: 552 YVASEDREPK-LHKLG-GAEWKKAKAKVSSAVQDIADDLIKLYAKREAEKGYAFTPDNDD 609
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F A F YE T DQ ++ ++V+RD+ ERE PMDRL+CGDVG+GKTEVA+RA F +
Sbjct: 610 QRNFEAMFAYEETEDQLRSIVEVKRDM-ERERPMDRLVCGDVGYGKTEVAIRAAFKAIQD 668
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ERF + I VGLLSRF+SK E+ L +K G ++I+
Sbjct: 669 GKQVAFLVPTTILAQQHYETIRERFQDFA-INVGLLSRFRSKKEQTATLKGLKEGQVDIV 727
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +L +++ +LGLL+VDEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++
Sbjct: 728 IGTHRILSKDLLFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSM 787
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ S V AI+ E+ RGGQVFY+ R++ + ++
Sbjct: 788 VGVRDLSVIETPPANRFPVQTYVMEHSGALVREAIEREMARGGQVFYLYNRVEDMARKVE 847
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+Q P I AHG+ +LE + F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 848 EIQVLVPEARIGHAHGKMSESELESVILSFLEGDYDVLVTTTIIETGVDIPNVNTLIVHD 907
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+ GLAQLYQLRGRVGR+++ A+AY Y +L+D A +RL A++E ELG GF++A
Sbjct: 908 ADRMGLAQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELGSGFKIAM 967
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG DL+ +ML E++ + + V ++I ++++
Sbjct: 968 RDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLQEAIEE-RQTGVKKEEKPEIEILLSVDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P YI ++M KA +Q + + E L ++G P E LL+ ++
Sbjct: 1027 YIPDAYIPDGYQKIQMYKRI-KAMDQ-VEEYGEIMEELEDRFGDLPIETERLLRVARMKV 1084
Query: 559 MAADIGITKIYASGKMV 575
G+ + K++
Sbjct: 1085 WGLGAGVVSVKDKQKLI 1101
>gi|410479942|ref|YP_006767579.1| transcription-repair coupling factor [Leptospirillum ferriphilum
ML-04]
gi|406775194|gb|AFS54619.1| transcription-repair coupling factor [Leptospirillum ferriphilum
ML-04]
Length = 1153
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/489 (45%), Positives = 313/489 (64%), Gaps = 5/489 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+R E P TL ++ T W R + K + I+K+ DL++LY R + + +
Sbjct: 535 YRGPEGSAP-TLDRIGGQT-WNRTRQKVRKEIEKISQDLVDLYARRKTVSGHSFSADLLL 592
Query: 80 A-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY+ TPDQ+ A+ V D+ E TPMDRLI GDVGFGKTE+A+RA F V+
Sbjct: 593 VREFENSFPYDLTPDQEDAWRAVSEDM-EAPTPMDRLILGDVGFGKTEIAMRAAFKAVAD 651
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G Q +L PT +LAKQH++ +RFS +P +++G +SR S+AE + G ++I+
Sbjct: 652 GYQVALLVPTTLLAKQHYESFLDRFSGFP-VRIGHISRMVSQAEIRATRRKLSLGEIDIL 710
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GT +L+ + NLGLL++DEEQRFGV QKEK+ S SVDVLTLSATPIPRTL ++L
Sbjct: 711 IGTTALISKETTFRNLGLLIIDEEQRFGVGQKEKLKSRYTSVDVLTLSATPIPRTLQMSL 770
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R S I TPPP R PI+T + F + ++ AI EL R GQVF++ R++ + +
Sbjct: 771 SGLRGISFIMTPPPGRKPIRTAILTFDRHRIHEAIDRELARDGQVFFIHNRVQTISRMVH 830
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+L + FPGV I +AHGQ ++EE MEKF Q +IL+ T IVESGLDI ANTIIV
Sbjct: 831 YLAKLFPGVPIGMAHGQMEDSRMEEVMEKFIQRHYRILVSTAIVESGLDIPAANTIIVNR 890
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
FG+++LYQ+RGRVGR+ ++A+AY P +S L+D A +RL L++ LG G+Q+A
Sbjct: 891 ADMFGISELYQIRGRVGRSGQQAYAYFLIPSESGLTDTARKRLKTLQDNTSLGSGYQIAM 950
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G++ G QQTG + VG+DL+ EM+ E++ E + + + V+ID+
Sbjct: 951 RDMEIRGAGSLLGHQQTGHIALVGLDLYLEMVEEAIQSRIEPEAVPLAREEVRIDLGRES 1010
Query: 499 RLPSEYINH 507
R P +YI H
Sbjct: 1011 RFPEDYIEH 1019
>gi|86135186|ref|ZP_01053768.1| transcription-repair coupling factor [Polaribacter sp. MED152]
gi|85822049|gb|EAQ43196.1| transcription-repair coupling factor [Polaribacter sp. MED152]
Length = 1110
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/565 (40%), Positives = 341/565 (60%), Gaps = 23/565 (4%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQ 85
+P + KL + AW++ K K K ++ + +L++LY R QK + P E
Sbjct: 491 KPPKIYKLG-SGAWKKIKQKTKARVKHIAFNLIQLYAKRKLQKGFAFGPDTHIQHELEGS 549
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ A DV+RD+ E++ PMDRL+CGDVGFGKTEVA+RA F V GKQ +L
Sbjct: 550 FMYEDTPDQYSATQDVKRDM-EKDQPMDRLVCGDVGFGKTEVAVRAAFKAVDNGKQVAIL 608
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA QH+ SER +P IK+ L+RF++ +K ++ + G ++II+GTH L
Sbjct: 609 VPTTILAFQHYQTFSERLKDFP-IKIDYLNRFRTAKQKTAAINGVNDGSVDIIIGTHQLT 667
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
R+ + +LGLL++DEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L RD S
Sbjct: 668 NQRIKFKDLGLLIIDEEQKFGVAVKDKLKTLKENVDTLTLTATPIPRTLQFSLMAARDLS 727
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I TPPP R PI++++ FS+E + AI YE+ RGGQVF++ RI ++E LQ+ P
Sbjct: 728 VIKTPPPNRHPIESNVIRFSEETIRDAISYEISRGGQVFFIHNRIDNIKEVAGLLQRLVP 787
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
I I HGQ ++LEE M F G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 788 SAKIGIGHGQMEGKKLEELMFGFMNGEFDVLVSTTIIESGLDVPNANTIFINNANNFGLS 847
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P +++D A +R+ AL +LG G +A KD+ IRG
Sbjct: 848 DLHQMRGRVGRSNKKAFCYFITPPYHMMTDDARKRIEALVLFSDLGSGINIAMKDLEIRG 907
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVI-------SVP---YKSVQIDIN 495
G + G +Q+G + ++G D + ++L E++ ++ E+ S P K VQID +
Sbjct: 908 AGDLLGGEQSGFINDIGFDTYQKILKEAIEELKENEFAELYPTDNSKPKEYVKEVQIDTD 967
Query: 496 INPRLPSEYINHLENPMEMVNE---AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 552
P +YIN + + + N+ EK E L+ F + ++G+ P +E LL
Sbjct: 968 FEILFPDDYINSITERLALYNKLGTLEKEEE-----LLVFESEIIDRFGEIPTQVEDLLN 1022
Query: 553 KLYVRRMAADIGITK-IYASGKMVG 576
+ ++ +A ++G+ K I ++VG
Sbjct: 1023 SVRIKWLAKELGLEKVILKQKRLVG 1047
>gi|374711149|ref|ZP_09715583.1| transcription-repair coupling factor [Sporolactobacillus inulinus
CASD]
Length = 1184
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 225/556 (40%), Positives = 343/556 (61%), Gaps = 14/556 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
+E K P+ S + W++ K K + +IQ + DL++LY R K + K+ A +
Sbjct: 561 SEGKEPKIYS--LGGSEWKKVKNKARSSIQDIADDLIKLYAKREASKGYAFSKDGAEQHD 618
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ +A +++RD+ E+E PMDRL+CGDVG+GKTEVALRA F ++ GKQ
Sbjct: 619 FDAAFPYQETVDQLQAIEEIKRDM-EKEKPMDRLLCGDVGYGKTEVALRAAFKAIADGKQ 677
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QHF+ SERF +P + +GLLSRF+S+ E+ E L +K+G +++++GT
Sbjct: 678 VAFLVPTTILAQQHFETASERFEDFP-VTIGLLSRFRSRKEQMETLKGLKNGTVDLVIGT 736
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V Y +LGLL+VDEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++ G
Sbjct: 737 HRLLSKDVQYKDLGLLIVDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMLGV 796
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T + ++ + AI+ E+ RGGQV+++ R++ ++ + +
Sbjct: 797 RDLSIIETPPENRFPVQTFVMEYNAALIREAIEREMARGGQVYFLYNRVETIQRMAEMIS 856
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHGQ +LE M F G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 857 NLVPDASVTFAHGQMKESELESAMIDFLDGNADVLVSTTIIETGVDIPNVNTLIVYDADR 916
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y ++++ A +RL A++E ELG GF++A +D+
Sbjct: 917 MGLSQLYQLRGRVGRSNRVAYAYFTYQRDKVMNEVAEKRLQAIKEFTELGSGFKIAMRDL 976
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDININ 497
IRG G + G QQ G + +VG DL+ +ML +++ SK P K V I+++ +
Sbjct: 977 SIRGAGNLLGAQQHGFIDSVGFDLYSQMLQDAIAERSSKDKTQTTAPRPPK-VTIEMDTD 1035
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
+P Y+N ++M + A QDI + + + ++G P + L K +
Sbjct: 1036 AYIPDAYLNDSLQKIDMYKRFKSAESLQDI---AELRDEMIDRFGDYPREVADLFKVAEM 1092
Query: 557 RRMAADIGITKIYASG 572
R A + I +I G
Sbjct: 1093 RVRANTLMIEEIKQQG 1108
>gi|258509516|ref|YP_003172267.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG]
gi|385829139|ref|YP_005866911.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG]
gi|257149443|emb|CAR88416.1| Transcription-repair coupling factor [Lactobacillus rhamnosus GG]
gi|259650784|dbj|BAI42946.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG]
Length = 1175
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/524 (41%), Positives = 334/524 (63%), Gaps = 7/524 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
T W++ K I+ + +L++LY R +K + P + +F +FPY TPDQ +
Sbjct: 566 TEWQKTKRIVAARIEDIADELIDLYAKREAEKGYAFGPDDDLQQKFEDEFPYPETPDQLR 625
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
+ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F V GKQ +L PT +LA+QHF
Sbjct: 626 SAKEIKRDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPTTILAQQHF 684
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
D + +RF+ +P +K+GLLSRFQ+ + + + +K+G ++I+VGTH LL V + +LGL
Sbjct: 685 DTMKDRFADFP-VKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDVAFRDLGL 743
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++ G RD S+I TPP R P
Sbjct: 744 LVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYP 803
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+T + + + AI+ E++RGGQVFY+ R++ +E + L++ P I AHGQ
Sbjct: 804 IQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASIGYAHGQM 863
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
QLE + F GA +L+ T I+E+G+D+ NANT+I+++ +GL+QLYQLRGR+GR
Sbjct: 864 TETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGR 923
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ + A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG G + G+QQ G
Sbjct: 924 SSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHG 983
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +VG DL+ +ML E+++K + +V +ID+ + LP++Y+ +E+
Sbjct: 984 FIDSVGYDLYTQMLQEAVNK--RRGLKTVQKTDAEIDLGLEAYLPTDYVADSRQKIELYK 1041
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
+A + + +E L ++G P + LL +++R A
Sbjct: 1042 RIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRFA 1083
>gi|393198754|ref|YP_006460596.1| transcription-repair coupling factor [Solibacillus silvestris
StLB046]
gi|327438085|dbj|BAK14450.1| transcription-repair coupling factor [Solibacillus silvestris
StLB046]
Length = 1170
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/559 (40%), Positives = 346/559 (61%), Gaps = 8/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
+ P+ K P+ L KL T W++ K A+Q + DL++LY R +K + P +
Sbjct: 552 YVPSGEKEPK-LHKLGGT-EWKKTHKKVSNAVQDIADDLIKLYAKREAEKGYAFSPDSDE 609
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F A FPYE T DQ + +V++D+ ERE PMDRL+CGDVG+GKTEVA+RA F +
Sbjct: 610 QRGFEAAFPYEETEDQLRTIAEVKKDM-ERERPMDRLVCGDVGYGKTEVAIRAAFKAILD 668
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ +S+RF Y I VGLLSRF+SK ++ E L +K G ++I+
Sbjct: 669 GKQVAFLVPTTILAQQHYETISKRFEDYA-INVGLLSRFRSKKQQTETLKGLKEGTVDIV 727
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +L VVY +LGLL+VDEEQRFGV KEKI + +VDVLTL+ATPIPRTL++++
Sbjct: 728 IGTHRILSKDVVYQDLGLLIVDEEQRFGVTHKEKIKQLRTNVDVLTLTATPIPRTLHMSM 787
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + V AI+ E+ RGGQVFY+ R++ + ++
Sbjct: 788 VGVRDLSVIETPPQNRFPVQTYVMEHNGALVREAIEREMARGGQVFYLYNRVEDITRRVE 847
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+Q P +A AHG+ +LE + F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 848 EIQMLVPDARVAFAHGKMTEAKLESVILSFIEGEYDVLVTTTIIETGVDIPNVNTLIVHD 907
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A
Sbjct: 908 ADRMGLSQLYQLRGRVGRSNRIAYAYFMYERDKVLTEVAEQRLQAVKEFTELGSGFKIAM 967
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + ++G DL+ +ML E++ + V + V+I ++++
Sbjct: 968 RDLSIRGAGNLLGAQQHGFIDSIGFDLYSQMLEEAVEE-RRTGVKREEKQDVEIMLHVDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P YI ++M KA E I + + L+ ++G P E L++ ++
Sbjct: 1027 YIPDAYIPDGYQKIQMYKRI-KAMEH-IEDYSEIIDELQDRFGDLPVETERLMRVARMKV 1084
Query: 559 MAADIGITKIYASGKMVGM 577
A + + I ++V +
Sbjct: 1085 WAKEANVLSIKEKQQVVSI 1103
>gi|213962106|ref|ZP_03390370.1| transcription-repair coupling factor [Capnocytophaga sputigena Capno]
gi|213955112|gb|EEB66430.1| transcription-repair coupling factor [Capnocytophaga sputigena Capno]
Length = 1110
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/561 (39%), Positives = 343/561 (61%), Gaps = 16/561 (2%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQ 85
+P + KL + AW+ K K K ++++ +L++LY R + + + + + E A
Sbjct: 490 KPPKIYKLG-SGAWKALKQKTKARVKEIAFNLIQLYAKRKEAQGFAFAHDSYMQNELEAS 548
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V GKQ VL
Sbjct: 549 FLYEDTPDQSKATAEVKADM-ESSKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVL 607
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT VLA QHF S+R +P +++ L+RF++ EK+ L+ + G L+II+GTH ++
Sbjct: 608 VPTTVLAFQHFQTFSQRMKDFP-VRIDYLNRFRTAKEKKIILEELAKGQLDIIIGTHQIV 666
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L RD S
Sbjct: 667 GEKVTYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLS 726
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+TPPP R PI + + F++E + I+YE+ RGGQVF++ R++ ++E +Q+ P
Sbjct: 727 VINTPPPNRYPIDSQVVPFNEEVIRDGIRYEIQRGGQVFFMHNRVENIQEVAGMIQRLLP 786
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
IAI HGQ ++LEETM F +G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 787 DARIAIGHGQMDGKKLEETMLAFMEGRYDVLVATTIIESGLDVPNANTIFINNAHNFGLS 846
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG G +A KD+ IRG
Sbjct: 847 DLHQMRGRVGRSNKKAFCYFITPPLIAMSDDARKRIEAIAQFSDLGSGLNIAMKDLEIRG 906
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---------VQIDINI 496
G + G +Q+G + +G D + ++L E+++++ E+ + + + QID +
Sbjct: 907 AGDLLGGEQSGFINEIGFDTYQKILQEAITELKENEFSELYHTAEEDKTYLTDTQIDTDF 966
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
P Y+N + + + NE ++ L + +L ++GK P LL + V
Sbjct: 967 ELLFPDTYVNRVAERLNLYNELSNLPNEE--ALQVYERNLIDRFGKLPPQAIDLLNSVRV 1024
Query: 557 RRMAADIGITK-IYASGKMVG 576
+ +A +GI K + +GKM G
Sbjct: 1025 KWLATRMGIEKLVMKNGKMTG 1045
>gi|440785116|ref|ZP_20962066.1| transcription-repair coupling factor [Clostridium pasteurianum DSM
525]
gi|440218488|gb|ELP57708.1| transcription-repair coupling factor [Clostridium pasteurianum DSM
525]
Length = 1171
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 225/588 (38%), Positives = 363/588 (61%), Gaps = 10/588 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQKKAF 98
W + K K + +I ++ +L++LY R K Y + +F +FPY+ TPDQ A
Sbjct: 576 WSKAKNKVRKSINEIAEELVKLYAIRSTLKGYTYSNDTVWQKQFEDEFPYDETPDQLSAI 635
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
D+++D+ E MDRL+CGDVG+GKTEVA+R F V GKQ L PT +LA+QH+
Sbjct: 636 EDIKQDM-EVGKVMDRLLCGDVGYGKTEVAVRIAFKAVMDGKQVAFLVPTTILAEQHYTN 694
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+RFS +P +K+ ++SRF++ A+++ + +K G+++I++GTH +L V + +LGLL+
Sbjct: 695 FKKRFSDFP-VKIDMISRFRTSAQQKSTIKALKEGNVDILIGTHRILQKDVQFKDLGLLI 753
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
VDEEQRFGV KEKI + K ++DVLTL+ATPIPRTL+++LTG RD S++ TPP ER P++
Sbjct: 754 VDEEQRFGVTHKEKIKNLKKNIDVLTLTATPIPRTLHMSLTGVRDISVMETPPEERYPVQ 813
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + + AI EL+RGGQVF+V R++ + + L + P IA+AHGQ
Sbjct: 814 TYVVEYNDQLIRDAIMRELNRGGQVFFVYNRVETINDMAGTLAKLLPEAKIAVAHGQMTE 873
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
R+LE M F IL+CT I+E+G+DIQN NT+I+ D + GL+QLYQLRGRVGR +
Sbjct: 874 RELETEMLGFMNKEYDILLCTTIIETGIDIQNVNTMIIYDADRMGLSQLYQLRGRVGRTN 933
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A++E ELG GF++A +D+ IRG G + G Q G +
Sbjct: 934 RMAYAYFTYRKDKVLTEVAEKRLKAIKEFTELGSGFKIAMRDLEIRGAGNMMGSAQHGHM 993
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
++G DL+ ML +++ + + + P ++ IDI ++ +P+ YI + +E+ +
Sbjct: 994 ASIGYDLYCRMLEDAIKQY-KGDIEKEPIETF-IDIKVDAYIPNSYIKNEIQKIEIYKKI 1051
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMK 578
+D + +Q E L +Y P S+ L+ Y++ +A +G+ I + +K
Sbjct: 1052 ASIESKDEFLDIQ--EELEDRYSDIPPSVSNLMHIAYIKSLARQLGVIDIKDKKDFINVK 1109
Query: 579 TNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL--LLELPREQLLN 624
N ++ ++ ++ + ++ S+ F+ D + L L RE+LLN
Sbjct: 1110 FNDKDRITDCLVKNLIKDYNK-SIIFKVDDKPMIIYNLKNLKREELLN 1156
>gi|315644370|ref|ZP_07897510.1| transcription-repair coupling factor [Paenibacillus vortex V453]
gi|315280247|gb|EFU43539.1| transcription-repair coupling factor [Paenibacillus vortex V453]
Length = 1175
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 228/560 (40%), Positives = 344/560 (61%), Gaps = 15/560 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAI 79
+E K P+ + KL W R K K + ++Q + DL++LY R Q P Y
Sbjct: 547 SEDKEPK-VYKLG-GNEWTRVKNKVRSSVQDIADDLIKLYAER--QSAPGYGFEKDTSEQ 602
Query: 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 139
EF FPY+ TPDQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F G
Sbjct: 603 QEFEDMFPYDETPDQLRAITEIKKDM-EQNRPMDRLLCGDVGYGKTEVAVRAAFKSAIEG 661
Query: 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 199
KQ VL PT +LA+QH++ ERF+ YP I + +LSRF+S+ E+ E + +K G ++I++
Sbjct: 662 KQVAVLVPTTILAQQHYETFRERFANYP-INIQVLSRFRSRKEQNETIKKVKQGSVDILI 720
Query: 200 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 259
GTH LL +V+ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++
Sbjct: 721 GTHRLLSQDIVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML 780
Query: 260 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 319
G RD S+I TPP R P++T++ S+ V AI+ EL RGGQV+Y+ R++G++E
Sbjct: 781 GVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIERELARGGQVYYLYNRVQGIQEMAAQ 840
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
+ P + + HGQ +LE+T+ F G +L+ T+I+E+G+DI N NT+IV D
Sbjct: 841 ISMLVPEARVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA 900
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 439
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E ELG GF++A +
Sbjct: 901 DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR 960
Query: 440 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK--SVQIDIN 495
D+ IRG G + G +Q G + +VG DL+ +ML E + KV ++P K + ID+
Sbjct: 961 DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKVSMLGEPALPTKDWNTSIDLG 1020
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
I+ LPS+YI +E+ + + D + + L ++G+ P ++ LL
Sbjct: 1021 IDAYLPSDYIYDSIQKIEIYKKVAVVSSIDESA--ELEDELLDRFGELPLAVSNLLAVSR 1078
Query: 556 VRRMAADIGITKIYASGKMV 575
++ GI I G V
Sbjct: 1079 LKVYGHTYGIDSIIQRGDDV 1098
>gi|386819022|ref|ZP_10106238.1| transcription-repair coupling factor Mfd [Joostella marina DSM 19592]
gi|386424128|gb|EIJ37958.1| transcription-repair coupling factor Mfd [Joostella marina DSM 19592]
Length = 1126
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/562 (40%), Positives = 342/562 (60%), Gaps = 17/562 (3%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQ 85
+P + KL + AW+ K K K ++++ +L++LY R +K Y P + E A
Sbjct: 500 KPPKIYKLG-SAAWKNLKKKTKSKVKEIAFNLIKLYAKRKTEKGFQYGPDSYLQNELEAS 558
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ A DV+RD+ E E PMDRL+CGDVGFGKTEVA+RA F V GKQ +L
Sbjct: 559 FLYEDTPDQSTATEDVKRDM-ENEQPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAIL 617
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA QH SER S P + + L+RF++ EK + L+ ++ G ++II+GTH L+
Sbjct: 618 VPTTILAFQHHKTFSERLSDMP-VTIDYLNRFRTAKEKRDTLERLEEGKVDIIIGTHQLV 676
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
V + +LGLL+VDEEQ+FGV K+K+ + K +VDVLTL+ATPIPRTL +L RD S
Sbjct: 677 NKNVKFKDLGLLIVDEEQKFGVAVKDKLKTIKENVDVLTLTATPIPRTLQFSLMAARDLS 736
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+TPPP R PI++++ ++E + A+ YE+ RGGQ+F++ RI+ ++E +Q+ P
Sbjct: 737 VITTPPPNRYPIESNVIQLNEEIIRDAVSYEIQRGGQIFFIHNRIENIKEVAGMVQRLVP 796
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
I I HGQ ++LE+ M F G +L+ T+I+ESGLD+ NANTI + + FGL+
Sbjct: 797 DAKIGIGHGQMDGKKLEQLMLSFMNGDFDVLVATSIIESGLDVPNANTIFINNANNFGLS 856
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P S ++D A +R+ ALE+ ELG GF +A KD+ IRG
Sbjct: 857 DLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKRIQALEQFTELGSGFNIAMKDLEIRG 916
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS----------VPYKSVQIDIN 495
G I G +Q+G + +G D + ++L E++ ++ E+ V K QID +
Sbjct: 917 AGDILGGEQSGFMNEIGFDTYQKILQEAIEELKENEFADLYETPKNEDKVYVKDTQIDTD 976
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
P +YIN + + + NE ++ L + L ++G+ P LL +
Sbjct: 977 FQLLFPDDYINAITERLNLYNELSTIKTEEALTL--YETRLIDRFGELPEEATDLLNSVR 1034
Query: 556 VRRMAADIGITK-IYASGKMVG 576
++ +A ++G+ + I GKMVG
Sbjct: 1035 IKWIATELGLERIILKQGKMVG 1056
>gi|328956088|ref|YP_004373421.1| transcription-repair coupling factor [Coriobacterium glomerans PW2]
gi|328456412|gb|AEB07606.1| transcription-repair coupling factor [Coriobacterium glomerans PW2]
Length = 1187
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/576 (38%), Positives = 356/576 (61%), Gaps = 8/576 (1%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQF 86
PR L++L +T W R + + + +++ DL++LY R + P PA E F
Sbjct: 571 PR-LTRL-NTADWSRATVRARNSAKRLAFDLVDLYTRRSTVAGHAFAPDTPAQLEMEQAF 628
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
PYEPT DQ +A D++ D+ E PMDRL+CGDVGFGKTEVALRA F V G Q MVL
Sbjct: 629 PYEPTRDQIEAIGDIKADM-EAPKPMDRLLCGDVGFGKTEVALRAAFKCVDNGYQVMVLC 687
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA+QH++ + ERF+ + DI+V +LSRF++ +E L G ++++VGTH LL
Sbjct: 688 PTTILAQQHYETLFERFAPF-DIEVEVLSRFRTPSELSAALAGFSDGSVDVLVGTHRLLS 746
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
S V ++LGL+++DEEQRFGV+ KE++ + + +DVLTLSATPIPRT+ +A++G RD SL
Sbjct: 747 SDVNPHSLGLVIIDEEQRFGVQHKEQLKNLREQIDVLTLSATPIPRTMQMAMSGVRDMSL 806
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPP R P+ H+ + + V +AI++EL R GQV+YV R+K +E+ +D + +A P
Sbjct: 807 ITTPPCGRRPVTVHVGEYDPDTVSAAIRFELAREGQVYYVSNRVKTIEDAIDRVHEAAPE 866
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+ +AHG+ SR++EETM F I +L+ T I+ESG+D + NT+I++D Q+ GLAQ
Sbjct: 867 ARVGVAHGKMSSREVEETMIDFTAHRIDVLVATTIIESGIDNPHTNTLIIEDAQRLGLAQ 926
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
LYQL+GRVGR+ +A AY +P + L+ +A ERL AL E +ELG G ++A +D+ IRG
Sbjct: 927 LYQLKGRVGRSASQAFAYFMFPGEQPLTQEATERLCALSEFQELGSGMRIAMRDLEIRGA 986
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
G++ G +Q G++ NVG DLF +ML +++++ + V I++ + L Y+
Sbjct: 987 GSLVGAEQHGNLSNVGFDLFTQMLGQAVAEARGEGASEMSESGVTINLPADFFLDEAYLR 1046
Query: 507 HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGIT 566
++ + + + AA D+ + + + G+ P + L + +R A +G+
Sbjct: 1047 DVDRRVLLYRKLAAAA--DLRTVDEAQQECEADNGELPLAGRNLFDRARLRIRADRLGLE 1104
Query: 567 KI-YASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNS 601
+ A+G++ ++ + + + + + V+ S
Sbjct: 1105 SVSLAAGRLTFTGIDVRAPIAAALRERLGAIVYPKS 1140
>gi|167747443|ref|ZP_02419570.1| hypothetical protein ANACAC_02163 [Anaerostipes caccae DSM 14662]
gi|317471172|ref|ZP_07930543.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA]
gi|167652805|gb|EDR96934.1| transcription-repair coupling factor [Anaerostipes caccae DSM 14662]
gi|316901387|gb|EFV23330.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA]
Length = 1175
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 228/556 (41%), Positives = 343/556 (61%), Gaps = 8/556 (1%)
Query: 26 KRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAA 84
K+PR L+KL W++ + K +++ +L+ELY R ++ Y K+ EF
Sbjct: 566 KKPR-LNKLG-GNEWKKTTKRVKGQVRETAKELVELYAVRQAKEGYVYDKDTVWQREFEE 623
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
FPYE T DQ A DV+RD+ E MDRLICGDVG+GKTEVA+RA F V+ GKQ
Sbjct: 624 MFPYEETQDQLNAIEDVKRDM-ESTKIMDRLICGDVGYGKTEVAIRAAFKAVTNGKQVAY 682
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
L PT +LA+QH++ ERF YP + V ++SRF + E++E ++ +K G +++++GTH L
Sbjct: 683 LVPTTILAQQHYNTFCERFQNYP-MTVRVMSRFCTPREQKETMEGLKKGIVDVVIGTHRL 741
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264
L V Y +LGLL++DEEQRFGV KEKI + K VDVL+LSATPIPRTL+++L G RD
Sbjct: 742 LSKDVKYKDLGLLIIDEEQRFGVGHKEKIKTMKKDVDVLSLSATPIPRTLHMSLIGIRDM 801
Query: 265 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 324
S++ PP +R I+T++ +++E V A+ E+ RGGQV+YV R+ + E LQ+
Sbjct: 802 SILEEPPHDRRAIQTYVMEYNEELVKEAVHREMTRGGQVYYVYNRVNNIAEITSELQKLL 861
Query: 325 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 384
P +A AHGQ R+LE M +F + I +L+ T I+E+GLDI N NT+I+ D Q GL
Sbjct: 862 PNAKVAFAHGQMRERELENIMMQFMEKEIDVLVSTTIIETGLDIPNVNTMIIHDANQLGL 921
Query: 385 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIR 444
+QLYQLRGRVGR+++ A A+L Y +LL + A +RL A+ E +LG G+++A +D+ IR
Sbjct: 922 SQLYQLRGRVGRSNRNAFAFLMYKRDTLLKETAEKRLQAIREFTDLGSGYKIAMRDLEIR 981
Query: 445 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEY 504
G G + GE+Q+G + VG DL+ +ML +++ ++ + + +D+NI+ LPS Y
Sbjct: 982 GAGNLLGEEQSGHMEAVGYDLYCKMLNDAVLRLKGELSEDTDFDTT-LDLNIDAFLPSAY 1040
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
I + +E+ +D MQ + L ++G P ++ LL ++ MA
Sbjct: 1041 IRNEVEKLELYKRISAIETKDELEDMQ--DELLDRFGDLPAAVVNLLHIALLKSMAHHAY 1098
Query: 565 ITKIYASGKMVGMKTN 580
+T + G+ V + N
Sbjct: 1099 MTDVKQKGEKVSFEMN 1114
>gi|334338786|ref|YP_004543766.1| transcription-repair coupling factor [Desulfotomaculum ruminis DSM
2154]
gi|334090140|gb|AEG58480.1| transcription-repair coupling factor [Desulfotomaculum ruminis DSM
2154]
Length = 1169
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/540 (41%), Positives = 331/540 (61%), Gaps = 9/540 (1%)
Query: 14 IMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 73
+ F + E P+ LS+L T W + K K + A++ M +L+ELY R K +
Sbjct: 552 VGFLQKYLGAEADHPK-LSRLG-GTEWSKAKAKVREAVRDMAQELLELYASRQTVKGYRF 609
Query: 74 -PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 132
P P AEF + FPYE TPDQ +A +V+RD+ E++ PMDRL+CGDVG+GKTEVALRA
Sbjct: 610 LPDTPWQAEFESLFPYEETPDQVRAISEVKRDM-EKDRPMDRLLCGDVGYGKTEVALRAA 668
Query: 133 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 192
F V KQ VL PT +LA+QH++ ERF+ YP +++ +LSRF++ E+ L +
Sbjct: 669 FKAVMDNKQVAVLVPTTILAQQHYNTFRERFANYP-VRIEMLSRFRTLKEQRLILAGLAT 727
Query: 193 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 252
++I++GTH L+ +++ +LGLLVVDEEQRFGV KE++ + +VDVLTL+ATPIPR
Sbjct: 728 REVDIVIGTHRLVQEDILFKDLGLLVVDEEQRFGVGHKERLKRLRKNVDVLTLTATPIPR 787
Query: 253 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 312
TL+++L G RD SL+ TPP ER P++T++ + AI+ EL+RGGQV++V R+
Sbjct: 788 TLHMSLVGVRDTSLLETPPEERFPVQTYVLEEDPALIREAIRRELNRGGQVYFVHNRVVD 847
Query: 313 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 372
L+ +LQ P IA+AHGQ +LE+ M +F +L+CT IVE+GLDI N N
Sbjct: 848 LDRVAGWLQDLVPEARIAVAHGQMKEDELEQVMLEFMDNTYDVLVCTTIVETGLDISNVN 907
Query: 373 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 432
T+IV+D FGLAQLYQLRGRVGR ++ A+AY + +L++ + RL+A+ E E G
Sbjct: 908 TLIVKDADHFGLAQLYQLRGRVGRTNRLAYAYFLFRRDKVLTEISERRLSAIREFTEFGS 967
Query: 433 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 492
GF++A +D+ IRG G I G +Q G + VG DL+ +L E++ + + P I
Sbjct: 968 GFKIAMRDLEIRGAGNILGAEQHGHIAEVGFDLYCRLLEEAVQEARGEK--TEPVIDTVI 1025
Query: 493 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 552
++ + +P Y+ +E+ AE + E L +YG P S++ LLK
Sbjct: 1026 ELPVEAYIPDAYVPDTNQKVELYRRLAALAEAS--EVEDLHEELVDRYGDLPESVQCLLK 1083
>gi|390933858|ref|YP_006391363.1| transcription-repair coupling factor [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389569359|gb|AFK85764.1| transcription-repair coupling factor [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 1166
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 229/582 (39%), Positives = 361/582 (62%), Gaps = 11/582 (1%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQ 85
+P L+KL ++ W + K + K A++ + DL++LY R K + K+ P +F +
Sbjct: 561 KPPKLNKLG-SSDWSKLKKRAKKAVEDIAKDLIKLYAKRQTMKGYAFSKDTPWQKDFEER 619
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
FPYE T DQ + ++++D+ E + PMDRL+CGDVG+GKTEVALRA F V+ GKQ L
Sbjct: 620 FPYEETEDQLRCIEEIKKDM-ESDKPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVAFL 678
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA+QH++ +RF +P +K+ +LSRF+S E+ + + M+ G ++I+VGTH +L
Sbjct: 679 CPTTILAEQHYNNFVQRFKDFP-VKIEMLSRFRSNKEQSQIIKMVADGTVDILVGTHKIL 737
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
+ V + +LGLL++DEEQRFGVK KEKI K ++DVL+LSATPIPRTL+++L G RD S
Sbjct: 738 QNDVKFKDLGLLIIDEEQRFGVKHKEKIKKLKENIDVLSLSATPIPRTLHMSLVGIRDMS 797
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
++ PP +R P++T++ F+++ + AI EL RGGQV++V RI G+E L++ P
Sbjct: 798 VLENPPEDRYPVQTYVVEFNEDLIRDAILRELGRGGQVYFVYNRIDGIERMASILKELVP 857
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
IA+AHGQ +LE+ M F IL+CT I+E+GLDI N NTIIV D + GL+
Sbjct: 858 EARIAVAHGQMDEGRLEDIMIGFLNREYDILVCTTIIETGLDIPNVNTIIVYDSDKMGLS 917
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
QLYQLRGRVGR+++ A+AY Y ++++ A +RL A++E E G GF++A +D+ IRG
Sbjct: 918 QLYQLRGRVGRSNRLAYAYFTYRKDKVITEVAEKRLEAIKEFTEFGSGFKIAMRDLEIRG 977
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYI 505
G + G +Q G + VG D++ +L E++ + P + IDI ++ + EYI
Sbjct: 978 AGNLLGAEQHGHIDAVGYDMYLRLLDEAIKNLKGISEEDKP--NTAIDIKVSAYIDKEYI 1035
Query: 506 NHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
+EM + E+D+ + + L ++ + P ++E L+ Y++ +A D
Sbjct: 1036 EDENQRLEMYKKISSIENEKDVEDI---KDELIDRFKEYPKAVEALIDVAYLKALARDAN 1092
Query: 565 ITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 606
I +I G + +K NK + ++D++ +E + + F G
Sbjct: 1093 ILEITERGNSIILKFKDNKSINSRIVDALVNE-FKGKIMFSG 1133
>gi|387819820|ref|YP_005680167.1| transcription-repair coupling factor [Clostridium botulinum H04402
065]
gi|322807864|emb|CBZ05439.1| transcription-repair coupling factor [Clostridium botulinum H04402
065]
Length = 1168
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 229/614 (37%), Positives = 373/614 (60%), Gaps = 26/614 (4%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K+P+ +SKL ++ W + K K K +I+++ DL++LY R K Y + +
Sbjct: 559 SEGKKPK-VSKLG-SSEWTKTKNKVKKSIEEIAEDLVKLYAIRASLKGYKYSDDTVWQKQ 616
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F +FPYE TPDQ A D+++D+ E PMDRL+CGDVG+GKTEVA+RA F V GKQ
Sbjct: 617 FEEEFPYEETPDQLLAIEDIKKDM-ESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQ 675
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ +RFS +P I V ++SRF++ +E++ + IK G+++I++GT
Sbjct: 676 VAFLVPTTILAQQHYNNFKQRFSDFP-ITVDVISRFRTLSEQKATIKSIKEGNVDILIGT 734
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + + +LGLL++DEEQRFGVK KEK+ + K +VDVLTLSATPIPRTL+++L G
Sbjct: 735 HRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGV 794
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP ER P++T++ ++ + + +I E+ RGGQ+++V R++ + E ++
Sbjct: 795 RDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVYNRVESIHEMASYIS 854
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P + IAHGQ ++LE + F + ILI T I+E+G+DI+N NT+I+ D +
Sbjct: 855 KLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADK 914
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A+++ ELG GF++A KD+
Sbjct: 915 MGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALKDL 974
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDININ 497
IRG G + G Q G + ++G DL+ ML +++ +D+ V +++ I+
Sbjct: 975 EIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPV------ETSVELKID 1028
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+P+ YI +E+ + ++ + M E L ++ P S+ L+ Y+R
Sbjct: 1029 AYIPNTYIKDETQKIEVYKKIASIDSKEEF--MDIEEELEDRFSDIPISVYNLMNISYIR 1086
Query: 558 RMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV-----HRNSLTFEGDQ 608
+ + I +I V K+++ +K+ K+++D + EV + ++ +
Sbjct: 1087 SLGKKVDIEEIKEISNEVVFQFEDKSSLREKIVKIIMDKYSKEVAFKLNEKPAIGYNIKN 1146
Query: 609 IKAELLLELPREQL 622
IK E LL + R L
Sbjct: 1147 IKKEQLLPIIRNFL 1160
>gi|192358851|ref|YP_001982241.1| transcription-repair coupling factor [Cellvibrio japonicus Ueda107]
gi|190685016|gb|ACE82694.1| transcription-repair coupling protein Mfd [Cellvibrio japonicus
Ueda107]
Length = 1184
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/541 (39%), Positives = 337/541 (62%), Gaps = 8/541 (1%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK-NPAIAEFAAQFPYEPTPDQK 95
+ +W++ K K I+ +L+E+Y R +K +P A A F+A FP+E TPDQ+
Sbjct: 585 SESWQKAKRKAAEQIRDTAAELLEVYARRAARKGFAFPDPQTAYAAFSASFPFEETPDQQ 644
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
+A V +D+ + PMDRL+CGDVGFGKTEVA+RA F AGKQ +LAPT +LA+QH
Sbjct: 645 RAIEAVVKDMLSPK-PMDRLVCGDVGFGKTEVAMRAAFVASHAGKQVAILAPTTLLAQQH 703
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
++ + +RF+++P I + +LSRF++ E + L+ + G ++IIVGTH LL + + NLG
Sbjct: 704 YESLKDRFAEWP-ITIEVLSRFRTTKEVNQVLERLAEGKVDIIVGTHKLLQPDIKFKNLG 762
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL++DEE RFGV+QKE+I + + +D+LTL+ATPIPRTL +++ G RD S+I+TPP RL
Sbjct: 763 LLIIDEEHRFGVRQKEQIKALRAEIDILTLTATPIPRTLNMSMAGIRDLSIIATPPARRL 822
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
+KT + + + + AI E+ RGGQV+Y+ + +E+ LQ+ P IA+ HGQ
Sbjct: 823 SVKTFVRTYDEAVIKEAILREILRGGQVYYLHNEVDTIEKVARELQELIPEARIAVGHGQ 882
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
R LE M F I++CT I+E+G+DI +ANTII+ +FGLAQL+QLRGRVG
Sbjct: 883 MRERDLERVMSDFYHKRFNIMVCTTIIETGIDIPSANTIIINRADKFGLAQLHQLRGRVG 942
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+ +A+AYL P++ ++D A++RL A+ +LG GF LA DM IRG G + GE+Q+
Sbjct: 943 RSHHQAYAYLLTPERRAMTDDAVKRLEAISAAEDLGAGFTLATYDMEIRGAGELLGEEQS 1002
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVPY---KSVQIDININPRLPSEYINHLENPM 512
G + +G L+ EML ++ + + + +S+ I++ I +PS+Y+ + +
Sbjct: 1003 GQIQTIGFSLYMEMLDRAVKAIRQGKQADIEQALKESIDINLRIPALIPSDYLPDVH--L 1060
Query: 513 EMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASG 572
+V A ++ L + ++G P +++ L + ++ A +GITKI A+
Sbjct: 1061 RLVMYKRLANAENAESLRDLQVEMIDRFGLLPDAVKNLFRVTQIKITAEQLGITKIEANS 1120
Query: 573 K 573
+
Sbjct: 1121 R 1121
>gi|418320541|ref|ZP_12931898.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus VCU006]
gi|418874519|ref|ZP_13428786.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC93]
gi|365227032|gb|EHM68239.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus VCU006]
gi|377772266|gb|EHT96017.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC93]
Length = 1168
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/559 (39%), Positives = 353/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTVE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|350566030|ref|ZP_08934739.1| transcription-repair coupling factor [Peptoniphilus indolicus ATCC
29427]
gi|348663181|gb|EGY79785.1| transcription-repair coupling factor [Peptoniphilus indolicus ATCC
29427]
Length = 1155
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 229/558 (41%), Positives = 345/558 (61%), Gaps = 11/558 (1%)
Query: 17 CYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 76
Y + + +P+ ++KL ++ W R K K + I+ + DL+ LY R K K + ++
Sbjct: 540 IYKYVVGDGTKPK-INKL-NSVEWSRTKQKVRKNIEDLADDLINLYATREKIKGYKFSED 597
Query: 77 PAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135
+EF F YE T Q + ++++D+ E E PMDRL+C DVG+GKTEVALRA F
Sbjct: 598 TQWQSEFEDAFIYEETEGQTSSIAEIKKDM-ESERPMDRLLCADVGYGKTEVALRAAFKA 656
Query: 136 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 195
+ KQ L PT +LA+QH++ + ERF +P +K+ LLSRF+S+A+ ++ L+ +K G +
Sbjct: 657 IMDSKQVAFLVPTTILAEQHYNTIVERFRDFP-VKIALLSRFRSRAQIKKDLEDLKDGFV 715
Query: 196 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 255
+I+VGTH LL V + +LGLL++DEEQRFGV+ KEK+ + K +VD LTL+ATPIPRTL
Sbjct: 716 DIVVGTHRLLSEDVKFKDLGLLIIDEEQRFGVRHKEKLKTLKKNVDTLTLTATPIPRTLQ 775
Query: 256 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 315
+++ G RD S+I PP ER P++T++ + V AI E++RGGQVFYV R++ +E
Sbjct: 776 MSMIGIRDMSVIDEPPEERFPVQTYVLEHNPLMVREAIIKEIERGGQVFYVTNRVQEMEL 835
Query: 316 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 375
M L+ P +AHGQ R+LE+T F +G +LI + I+E+GLD+QNANTII
Sbjct: 836 KMAELKDLVPEASFTMAHGQMSERELEKTFVDFIKGEYDVLIASTIIETGLDVQNANTII 895
Query: 376 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 435
V + + GL+QLYQLRGRVGR+++ A+AY Y L++ A +RL +++E E G G++
Sbjct: 896 VTEANRLGLSQLYQLRGRVGRSNRIAYAYFTYEKDVSLTEVATKRLKSIKEFTEFGSGYK 955
Query: 436 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDIN 495
LA KD+ IRG G+I G +Q+G V ++G DL+ + L E+++K V V + Q+DI
Sbjct: 956 LALKDLEIRGSGSILGSRQSGHVNSIGYDLYIKYLKEAVAKKRGEEVEEV--EDTQVDIK 1013
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQ-FTESLRRQYGKEPYSMEILLKKL 554
+N +P YI E +E+ +K A D Q + L +Y P + L+
Sbjct: 1014 VNSFIPHNYIMDNEQRLEIY---KKIAMIDSETEYQDLVDELIDRYSDVPEEVSNLMDIS 1070
Query: 555 YVRRMAADIGITKIYASG 572
+R A + GIT + SG
Sbjct: 1071 LIRNKARESGITSVMQSG 1088
>gi|386346936|ref|YP_006045185.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
6578]
gi|339411903|gb|AEJ61468.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
6578]
Length = 1127
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/451 (45%), Positives = 310/451 (68%), Gaps = 5/451 (1%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQF 86
PR L KL +++W++RK + K +++ + L+ +Y R +P + EF A+F
Sbjct: 527 PR-LDKLG-SSSWQKRKERVKKSVEDLAKRLLAIYSRRKLAHGFAFPPDTEWQMEFEARF 584
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
P+E T DQ + +V+RD+ E PMDRL+CGDVGFGKTE+ALRA F V+AGKQ +LA
Sbjct: 585 PFEETEDQLRCIEEVKRDM-ESPRPMDRLVCGDVGFGKTEIALRAAFKAVTAGKQVAILA 643
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +L +QH++ ER +P ++ +LSRF E++E L ++ G ++I++GTH +L
Sbjct: 644 PTTILVEQHYETFQERLEGFP-VRAAMLSRFVPVPEQKEILKALREGKIDILIGTHRILQ 702
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
VV+ +LGLLV+DEEQRFGVK KE++ K SVD LTL+ATPIPRTL+++L RD SL
Sbjct: 703 KDVVFKDLGLLVIDEEQRFGVKDKERLKELKASVDCLTLTATPIPRTLHMSLLKIRDISL 762
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
+ TPP ER PI+TH+ FS+E + AI+ E++RGGQVFY+ R++ L + F+++ P
Sbjct: 763 LETPPRERRPIETHILEFSEEVIARAIRREVERGGQVFYLHNRVETLPQVKTFIERLVPE 822
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
V + +AHG+ S QLEE M +F G +L+ T I+E+G++I NANTII+ +G+AQ
Sbjct: 823 VMVEVAHGKMSSHQLEEIMHRFIHGGFHVLVSTTIIENGINIPNANTIIIDRADMYGIAQ 882
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
LYQLRGRVGR+D+ A+AYLFYP + +S+ A +RL + + ELG GF++A KD+ +RG
Sbjct: 883 LYQLRGRVGRSDRTAYAYLFYPAQREISELAAKRLQVIADHTELGAGFKVALKDLEVRGA 942
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKV 477
G + G +Q+GD+ +VG D++ +L E++ ++
Sbjct: 943 GNLLGREQSGDIHSVGFDMYLRLLDEAIREL 973
>gi|189501723|ref|YP_001957440.1| hypothetical protein Aasi_0272 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497164|gb|ACE05711.1| hypothetical protein Aasi_0272 [Candidatus Amoebophilus asiaticus
5a2]
Length = 1123
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 230/551 (41%), Positives = 343/551 (62%), Gaps = 17/551 (3%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPY 88
T+SKL + AWE++K+K K +Q + +L++LY R + K+ + AE + F Y
Sbjct: 503 TMSKLG-SGAWEQKKSKVKHKVQVIAKELIQLYSKRKYAPGFAFSKDTFLQAEMESSFIY 561
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
E TPDQ A DV++D+ E PMDRL+CGDVGFGKTEVA+RA F V KQ VL PT
Sbjct: 562 EDTPDQASATADVKKDM-EAPHPMDRLVCGDVGFGKTEVAIRAAFKAVYDRKQVAVLVPT 620
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
+LA QH++ R S +P + V ++RF+SK E + + G ++I++GTH++LG
Sbjct: 621 TILALQHYESFKNRLSNFP-VDVKYVNRFKSKQEIKRIQEAAAQGKIDILIGTHTILGKA 679
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
+ +LGLLVVDEEQ+FGVK K++I FK++VDVLTL+ATPIPRTL+ +L G RD S+I+
Sbjct: 680 FEFKDLGLLVVDEEQKFGVKAKDRIKEFKVNVDVLTLTATPIPRTLHFSLMGARDLSIIA 739
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
TPP R P++T + F K+ V AI YE+ RGGQVF+V RI ++E + L + P
Sbjct: 740 TPPSNRQPVQTSIHTFDKKIVQDAIHYEVQRGGQVFFVHNRINNIQEVANMLYKLVPEYR 799
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
I IAHGQ QLE+ M F G IL+ TNI+ESGLDI NANTII+ D FGL+ L+
Sbjct: 800 IGIAHGQMDGDQLEKKMLTFIAGGYDILVSTNIIESGLDIPNANTIIINDSHMFGLSDLH 859
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
Q+RGRVGR++K+A YL P S L+++A +RL+ LEE ELG GF++A +D+ IRG G
Sbjct: 860 QMRGRVGRSNKKAFCYLIAPPNSSLTEEARKRLSTLEEFTELGDGFKVAMRDLDIRGAGN 919
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV-------QIDININPRL- 500
+ G +Q+G + +VG + + ++L E++ ++ E + + + ID + L
Sbjct: 920 LLGAEQSGFIADVGFEAYCKILDEAVQELKESEFKELFAEELARKGQLSNIDCTLETDLE 979
Query: 501 ---PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
P+ Y+N+ + + + + + L F ++ ++G P S++ L+K + +R
Sbjct: 980 LLIPTSYVNNDTERLRLYTKLDNIENEK--GLENFQVEIQDRFGALPTSVQELIKAVKLR 1037
Query: 558 RMAADIGITKI 568
+A + + KI
Sbjct: 1038 WVAKKLCLQKI 1048
>gi|255025717|ref|ZP_05297703.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J2-003]
Length = 626
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 240/627 (38%), Positives = 369/627 (58%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 7 EGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 64
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 65 EEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 123
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K+G ++++VGTH
Sbjct: 124 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTH 182
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 183 RLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 242
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 243 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 302
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 303 MVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 362
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 363 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 422
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 423 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 479
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 480 PEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHA 537
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++G IT +++ G++ ++ ++ F M+ + EG
Sbjct: 538 LEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----------GVGMEGT 587
Query: 608 QIKAELLLELPREQLLNWIFQ--CLAE 632
Q+K + + + + L W++Q LAE
Sbjct: 588 QLK--ITINVQNKPLKEWLYQVKSLAE 612
>gi|340618092|ref|YP_004736545.1| transcription-repair coupling factor [Zobellia galactanivorans]
gi|339732889|emb|CAZ96264.1| Transcription-repair coupling factor [Zobellia galactanivorans]
Length = 1134
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/553 (39%), Positives = 336/553 (60%), Gaps = 17/553 (3%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQK 95
+ AW++ K K K ++K+ DL+++Y R +K Y P + E A F YE TPDQ
Sbjct: 515 SAAWKKLKQKTKSRVKKIAFDLIKIYAKRRLEKGFQYAPDSYLQTELEASFIYEDTPDQS 574
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
KA D+++D+ E E PMDRLICGDVGFGKTEVA+RA F V GKQ VL PT +LA QH
Sbjct: 575 KATEDLKKDM-ESERPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQH 633
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
SER + P + V L+RF++ E++E L ++ G ++II+GTH L+ V + +LG
Sbjct: 634 HRTFSERLKEMP-VSVDYLNRFRTAKERKETLAKLESGQVDIIIGTHQLVNKNVKFKDLG 692
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL+VDEEQ+FGV K+K+ S K +VDVLTL+ATPIPRTL +L RD S+I T PP R
Sbjct: 693 LLIVDEEQKFGVAVKDKLKSIKENVDVLTLTATPIPRTLQFSLMAARDLSVIKTAPPNRY 752
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
PI++ + F +E + AI+YE++RGGQ+F++ RI+ ++E +Q+ P + I HGQ
Sbjct: 753 PIESRVIRFGEEVIRDAIRYEIERGGQIFFIHNRIENIKEVAGMIQRLVPDAKVGIGHGQ 812
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
++LE M F G +L+ T I+ESGLD+ NANTI + + FGL+ L+Q+RGRVG
Sbjct: 813 MDGKKLENLMLSFMNGEFDVLVSTTIIESGLDVTNANTIFINNANNFGLSDLHQMRGRVG 872
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A Y P ++ +A +R+ AL + ELG GF +A KD+ IRG G + G +Q+
Sbjct: 873 RSNKKAFCYFITPPYESMTPEARKRIEALAQFTELGSGFNIAMKDLEIRGAGDLLGGEQS 932
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVIS-----------VPYKSVQIDININPRLPSEY 504
G + +G + + ++L E++ ++ E+ V K Q+D + P +Y
Sbjct: 933 GFINEIGFETYQKILAEAIDELKENEFKDLYEEVEGHQQKVFVKETQLDSDFQLLFPDDY 992
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
IN++ + + + +++ L +F L ++G+ P E LL + ++ +A IG
Sbjct: 993 INNITERLTLYTDLNDIKDEE--NLQKFEAQLVDRFGELPTEAEDLLNSVRIKWIANSIG 1050
Query: 565 ITKIY-ASGKMVG 576
I K+ GK++G
Sbjct: 1051 IEKVVMKKGKLIG 1063
>gi|164688875|ref|ZP_02212903.1| hypothetical protein CLOBAR_02523 [Clostridium bartlettii DSM 16795]
gi|164602079|gb|EDQ95544.1| transcription-repair coupling factor [Clostridium bartlettii DSM
16795]
Length = 1131
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 228/540 (42%), Positives = 337/540 (62%), Gaps = 10/540 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYE 89
L+KL T W + K K K I+ M DL+ELY R + K + K+ EF + FPYE
Sbjct: 558 LNKLG-TNEWTKAKAKVKREIEDMTKDLVELYAKREQIKGYKFSKDTVWQKEFESMFPYE 616
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
T DQ KA + ++D+ E MDRLICGDVG+GKTEVA+RA F KQ +L PT
Sbjct: 617 ETEDQLKAIKETKKDM-ESSKVMDRLICGDVGYGKTEVAIRAAFKACMDQKQVAILVPTT 675
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH++ +RF+ YP I+V +LSRF++ ++ E ++ + G ++I++GTH ++ +
Sbjct: 676 ILAQQHYNTFKQRFANYP-IRVEVLSRFKTAKQQREIINDARKGLVDILIGTHRIISDDI 734
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
NLGL+V+DEEQRFGVK KE + K +VDVLTLSATPIPRTL+++L+G RD S+I
Sbjct: 735 NLPNLGLVVIDEEQRFGVKHKESLKKIKNTVDVLTLSATPIPRTLHMSLSGIRDMSVIEE 794
Query: 270 PPPERLPIKTHLSAFSKEKVI-SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
PP ER P+ T++ A +KE +I I+ E+ RGGQVF+V R++ +EE +Q+ P
Sbjct: 795 PPQERHPVITYV-AEAKESIIQDEIEREIARGGQVFFVYNRVEHIEEMASMVQRLVPEAK 853
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+A+AHG+ S+ LE + F +L+CT IVE+G+DI NANT+I+ D + GLAQLY
Sbjct: 854 VAVAHGRMTSKTLENIILGFLNKEYDVLVCTTIVETGMDISNANTMIIYDADKMGLAQLY 913
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
QLRGRVGR+ ++ +AYL Y +LS+ A +RL A+ E E G GF++A +D+ IRG G
Sbjct: 914 QLRGRVGRSSRQGYAYLMYEKDKVLSEVAEKRLKAIREFTEFGSGFKIAMRDLEIRGAGN 973
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHL 508
I G QQ G + +G DL+ +ML E++ KV V+I++ +N +P+ YI
Sbjct: 974 ILGSQQHGHMAVIGYDLYVKMLNEAIKKV--KGEDIEEEIDVEINLAVNAYIPNSYIPEE 1031
Query: 509 ENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+ +EM + +D + + TE L ++ P S++ LL Y++ M + I K+
Sbjct: 1032 LDKIEMYKKIASIENKD--DMKEVTEELIDRFSDVPRSVQTLLSIAYIKSMCKKLKIEKV 1089
>gi|374599502|ref|ZP_09672504.1| transcription-repair coupling factor [Myroides odoratus DSM 2801]
gi|423324650|ref|ZP_17302491.1| transcription-repair coupling factor [Myroides odoratimimus CIP
103059]
gi|373910972|gb|EHQ42821.1| transcription-repair coupling factor [Myroides odoratus DSM 2801]
gi|404607907|gb|EKB07398.1| transcription-repair coupling factor [Myroides odoratimimus CIP
103059]
Length = 1119
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/552 (39%), Positives = 340/552 (61%), Gaps = 17/552 (3%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR-PPYPKNPAIAEFAAQFPYEPTPDQK 95
++AW+ KTK K ++ + +L++LY R QK P + E + F YE TPDQ
Sbjct: 504 SSAWKNLKTKTKARVKNIAFNLIQLYAKRRTQKGFACAPDSYLQHELESSFIYEDTPDQL 563
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
KA +V+ D+ E + PMDRL+CGDVGFGKTEVA+RA F +V GKQ +L PT +LA QH
Sbjct: 564 KATQEVKADM-ELDRPMDRLVCGDVGFGKTEVAIRAAFKMVDNGKQVAILVPTTILAFQH 622
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
F SER P ++V ++RF++ +K + L ++ G ++II+GTH L+ V++ +LG
Sbjct: 623 FKTFSERLKDMP-VRVSYINRFRTAKQKSDILRDLEAGQIDIIIGTHQLVNKNVIFKDLG 681
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL++DEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L RD S+I+TPPP R
Sbjct: 682 LLIIDEEQKFGVAVKDKLKTISENVDTLTLTATPIPRTLQFSLMAARDLSVITTPPPNRY 741
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
PI+T++ F++E + A+ YEL+RGGQV+++ RI+ + E +Q+ P + + HGQ
Sbjct: 742 PIETNVVGFNEEIIRDAVAYELERGGQVYFINNRIENIREVAGMIQRLVPDAKVGVGHGQ 801
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
++LEE M F G +L+ T I+ESGLD+ NANTI++ + FGL+ L+Q+RGRVG
Sbjct: 802 MDGKKLEELMLAFMDGEFDVLVATTIIESGLDVPNANTILINNANNFGLSDLHQMRGRVG 861
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A Y P S ++++A +R+ ALE+ +LG GF +A KD+ IRG G I G +Q+
Sbjct: 862 RSNKKAFCYFICPPYSAMTEEARKRIQALEQFSDLGSGFNIAMKDLEIRGAGDILGGEQS 921
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVIS-----------VPYKSVQIDININPRLPSEY 504
G + +G + + +++ E++ ++ E+ V + QID + P EY
Sbjct: 922 GFINEIGFETYQKIMQEAIEELKENEFKDLYLEDKKEENKVFVRDCQIDTDFEILFPDEY 981
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
+N++ + + NE A + + L + + L ++G P LL L ++ A+++G
Sbjct: 982 VNNISERLNLYNELSTIATEPV--LKAYEQRLIDRFGPLPRQAVALLDSLRIKWHASNLG 1039
Query: 565 ITK-IYASGKMV 575
I K I GKM+
Sbjct: 1040 IEKVILKQGKMI 1051
>gi|221142305|ref|ZP_03566798.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|304380521|ref|ZP_07363197.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|384861165|ref|YP_005743885.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|384869087|ref|YP_005751801.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus T0131]
gi|387142191|ref|YP_005730584.1| putative transcription-repair coupling factor [Staphylococcus aureus
subsp. aureus TW20]
gi|418276826|ref|ZP_12891641.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21178]
gi|418946686|ref|ZP_13499101.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-157]
gi|418952828|ref|ZP_13504842.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-189]
gi|424784355|ref|ZP_18211166.1| Transcription-repair coupling factor [Staphylococcus aureus CN79]
gi|269940074|emb|CBI48450.1| putative transcription-repair coupling factor [Staphylococcus aureus
subsp. aureus TW20]
gi|302750394|gb|ADL64571.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304340925|gb|EFM06849.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|329313222|gb|AEB87635.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus T0131]
gi|365174004|gb|EHM64405.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21178]
gi|375376188|gb|EHS79733.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-189]
gi|375377614|gb|EHS81067.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-157]
gi|421957273|gb|EKU09596.1| Transcription-repair coupling factor [Staphylococcus aureus CN79]
Length = 1168
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/559 (39%), Positives = 353/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQV Y+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVLYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|429762585|ref|ZP_19294973.1| transcription-repair coupling factor [Anaerostipes hadrus DSM 3319]
gi|429181405|gb|EKY22568.1| transcription-repair coupling factor [Anaerostipes hadrus DSM 3319]
Length = 1173
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 229/582 (39%), Positives = 355/582 (60%), Gaps = 9/582 (1%)
Query: 26 KRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAA 84
++P+ L KL W++ KT+ K ++ + +L++LY R ++ Y K+ EF
Sbjct: 565 RKPK-LHKLG-GNEWKKTKTRVKGQVKDIAEELVQLYALRQAKEGYVYDKDSVWQKEFEE 622
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
FPY+ T DQ A D +RD+ E + MDRLICGDVG+GKTEVA+RA F V GKQ
Sbjct: 623 LFPYDETQDQLNAIDDTKRDM-ESKKIMDRLICGDVGYGKTEVAIRAAFKAVDNGKQVAY 681
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
L PT +LA+QH++ ++RF YP I V ++SRF + E++E ++ +K+G +++++GTH L
Sbjct: 682 LVPTTILAQQHYNTFAQRFHDYP-ITVRMMSRFCTAKEQKETIEGLKNGTVDVVIGTHRL 740
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264
L + Y NLGLLV+DEEQRFGV KEKI + K VDVL+LSATPIPRTL+++L G RD
Sbjct: 741 LSKDMQYKNLGLLVIDEEQRFGVTHKEKIKTMKKDVDVLSLSATPIPRTLHMSLIGIRDM 800
Query: 265 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 324
S++ PP +R I+T++ +++E V A+ E+ RGGQV+YV R+ + E LQ+
Sbjct: 801 SVLEEPPHDRRAIQTYVMEYNEELVKEAVYREMTRGGQVYYVYNRVNNIAEVTAELQRLL 860
Query: 325 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 384
P +A AHGQ R+LEE M F I +L+ T I+E+GLDI N NT+I+ D Q GL
Sbjct: 861 PDAKVAFAHGQMKERELEEIMMGFMNHEIDVLVSTTIIETGLDIPNVNTMIIHDANQLGL 920
Query: 385 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIR 444
+QLYQLRGRVGR+++ A A+L Y +LL + A +RL A+ E +LG G+++A +D+ IR
Sbjct: 921 SQLYQLRGRVGRSNRNAFAFLMYKKNTLLKETAEKRLQAIREFTDLGSGYKIAMRDLEIR 980
Query: 445 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEY 504
G G + G+ Q+G + VG DL+ +ML E++ ++ + + +D++IN +PS Y
Sbjct: 981 GAGNLLGQAQSGHMEAVGYDLYCKMLNEAVLRLKGELKDEDEFDTT-LDLDINAFIPSTY 1039
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
+ + +E+ +D + T+ L ++G+ P ++ LL Y++ +A
Sbjct: 1040 VYNEYQKLELYKRISSIESED--EMEDMTDELIDRFGEMPKAVHNLLYVAYLKSLAHHAY 1097
Query: 565 ITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 606
+T + G+ V + + V I ++ E R L+F+
Sbjct: 1098 MTDVKQKGEKVSFEMKPDAAVDVEKIPAILEEYKR-ELSFQA 1138
>gi|418445156|ref|ZP_13016650.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS8]
gi|387738610|gb|EIK25642.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS8]
Length = 1168
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/559 (39%), Positives = 353/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTENAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHSFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|116871596|ref|YP_848377.1| transcription-repair coupling factor [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116740474|emb|CAK19594.1| transcription-repair coupling factor [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 1179
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 239/622 (38%), Positives = 366/622 (58%), Gaps = 37/622 (5%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 560 EGKTPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 618 EEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K+G ++I+VGTH
Sbjct: 677 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDIVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLLVVDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVEYQDLGLLVVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 856 MVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 1032
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 1033 PEYYITDGRQKIEMYKRFRNI--ESLNDLEDLQSDMIDRFGEYPEEVEYLFTMTELKVHA 1090
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++G IT +++ G++ ++ ++ F M+ + EG
Sbjct: 1091 LEVGIESVKQEQNKITMLFSESGTAGIRGDVVMQIIGEFGRMV----------GVGMEGT 1140
Query: 608 QIKAELLLELPREQLLNWIFQC 629
Q+K + + + + L W++Q
Sbjct: 1141 QLK--ITINVQNKPLKEWLYQV 1160
>gi|423328429|ref|ZP_17306236.1| transcription-repair coupling factor [Myroides odoratimimus CCUG
3837]
gi|404604865|gb|EKB04481.1| transcription-repair coupling factor [Myroides odoratimimus CCUG
3837]
Length = 1120
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/552 (39%), Positives = 338/552 (61%), Gaps = 17/552 (3%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR-PPYPKNPAIAEFAAQFPYEPTPDQK 95
+ AW+ K K K ++ + +L++LY R QK P + E + F YE TPDQ
Sbjct: 504 SAAWKTLKNKTKARVKHIAFNLIQLYAKRRLQKGFQCAPDSYLQHELESSFIYEDTPDQL 563
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
KA +V+ D+ E+E PMDRL+CGDVGFGKTEVA+RA F +V GKQ +L PT +LA QH
Sbjct: 564 KATQEVKADM-EQERPMDRLVCGDVGFGKTEVAIRAAFKMVDNGKQVAILVPTTILAFQH 622
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
+ +ER P ++V ++RF++ +K E L ++ G ++I++GTH L+ +V+ +LG
Sbjct: 623 YQTFTERLKDMP-VRVSYINRFRTAKQKAEILKDLEAGKIDILIGTHQLVNKGIVFKDLG 681
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL++DEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L RD S+ISTPPP R
Sbjct: 682 LLIIDEEQKFGVAVKDKLKTISENVDTLTLTATPIPRTLQFSLMAARDLSVISTPPPNRY 741
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
PI+T++ F++E + A+ YE++RGGQV+++ RI+ + E +Q+ P + I HGQ
Sbjct: 742 PIETNVVGFNEEVIRDAVSYEIERGGQVYFINNRIENIREVAGMIQRLVPDAKVGIGHGQ 801
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
++LEE M F G +L+ T I+ESGLD+ NANTI++ + FGL+ L+Q+RGRVG
Sbjct: 802 MDGKKLEELMLAFMNGEFDVLVATTIIESGLDVPNANTILINNANNFGLSDLHQMRGRVG 861
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A Y P S+++++A +R+ ALE+ +LG G +A KD+ IRG G I G +Q+
Sbjct: 862 RSNKKAFCYFICPPYSVMTEEARKRIQALEQFSDLGSGLNIAMKDLEIRGAGDILGGEQS 921
Query: 456 GDVGNVGVDLFFEML-----------FESLSKVDEHCVISVPYKSVQIDININPRLPSEY 504
G + +G + + +++ F+ L + + V K QID + P EY
Sbjct: 922 GFINEIGFETYQKIMQEAIEELKANEFKDLYEEENKEENKVFVKDTQIDTDFEILFPDEY 981
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
IN++ + + NE +++ L Q+ + L ++G P LL L ++ AA++G
Sbjct: 982 INNITERLNLYNELSLITNEEV--LQQYEQRLIDRFGALPRQAIALLNSLRIKWHAANMG 1039
Query: 565 ITKIY-ASGKMV 575
I KI GKM+
Sbjct: 1040 IEKIVMKQGKMI 1051
>gi|297243627|ref|ZP_06927558.1| transcription-repair coupling factor [Gardnerella vaginalis AMD]
gi|296888378|gb|EFH27119.1| transcription-repair coupling factor [Gardnerella vaginalis AMD]
Length = 1202
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/546 (40%), Positives = 337/546 (61%), Gaps = 8/546 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYE 89
L+KL + W + K K K + ++ +L++LY R + + + K+ P E FPY+
Sbjct: 600 LNKLGGSD-WAQTKAKAKKHVHEIAENLIKLYSARQQSRGFAFSKDTPWQKELEDAFPYQ 658
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
T DQ +V+ D+ E+ PMDRLICGDVGFGKTE+ALRA F V KQ +VL PT
Sbjct: 659 ETADQLTTIDEVKADM-EKPIPMDRLICGDVGFGKTEIALRAAFKAVQDSKQVVVLVPTT 717
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+L +QH++ + RF +P +KV +SRFQ+ E EE L ++ G +++++GTH LL +
Sbjct: 718 LLVQQHYETFTNRFEGFP-VKVAAMSRFQTSKEIEETLAGLQDGSIDVVIGTHKLLNPSI 776
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGL+++DEEQRFGV+ KE + + + +VDVL+LSATPIPRTL +A+TG R+ S ++T
Sbjct: 777 KFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLAT 836
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP +RLP+ T++ A+ +V + IK EL RGGQVFYV R++ + +Q+ P V +
Sbjct: 837 PPEDRLPVLTYVGAYDNSQVAACIKRELLRGGQVFYVHNRVEDISSVASKIQELVPDVRV 896
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
AIAHG+ +QL+ + F I +L+CT I+E+GLDI NANT+IV +FGL+QL+Q
Sbjct: 897 AIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 956
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR + A+AY Y ++ Q+ +RL+ + + LG GF +A KD+ +RG G +
Sbjct: 957 LRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQHTALGSGFDVAMKDLELRGTGNL 1016
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G++Q+G + VG DL+ M+ E++ K E V V ID+ + LP +YI
Sbjct: 1017 LGDEQSGHIEGVGFDLYVRMVSEAVEKYKEPE--RVEPVCVTIDLPVEASLPVDYI--AS 1072
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
+ + + + AA +D L + + L ++G P E L +R A +IGIT+I
Sbjct: 1073 DKLRLEAYRKLAAAKDNSDLRELHDELLDRFGNPPEEFESLCDVARLRFKAREIGITQIS 1132
Query: 570 ASGKMV 575
+ GK V
Sbjct: 1133 SQGKSV 1138
>gi|415709825|ref|ZP_11463404.1| transcription-repair coupling factor [Gardnerella vaginalis 6420B]
gi|388055827|gb|EIK78712.1| transcription-repair coupling factor [Gardnerella vaginalis 6420B]
Length = 1202
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/546 (40%), Positives = 337/546 (61%), Gaps = 8/546 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYE 89
L+KL + W + K K K + ++ +L++LY R + + + K+ P E FPY+
Sbjct: 600 LNKLGGSD-WAQTKAKAKKHVHEIAENLIKLYSARQQSRGFAFSKDTPWQKELEDAFPYQ 658
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
T DQ +V+ D+ E+ PMDRLICGDVGFGKTE+ALRA F V KQ +VL PT
Sbjct: 659 ETADQLTTIDEVKADM-EKPIPMDRLICGDVGFGKTEIALRAAFKAVQDSKQVVVLVPTT 717
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+L +QH++ + RF +P +KV +SRFQ+ E EE L ++ G +++++GTH LL +
Sbjct: 718 LLVQQHYETFTNRFEGFP-VKVAAMSRFQTSKEIEETLAGLQDGSIDVVIGTHKLLNPSI 776
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGL+++DEEQRFGV+ KE + + + +VDVL+LSATPIPRTL +A+TG R+ S ++T
Sbjct: 777 KFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLAT 836
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP +RLP+ T++ A+ +V + IK EL RGGQVFYV R++ + +Q+ P V +
Sbjct: 837 PPEDRLPVLTYVGAYDNSQVAACIKRELLRGGQVFYVHNRVEDISSVASKIQELVPDVRV 896
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
AIAHG+ +QL+ + F I +L+CT I+E+GLDI NANT+IV +FGL+QL+Q
Sbjct: 897 AIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 956
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR + A+AY Y ++ Q+ +RL+ + + LG GF +A KD+ +RG G +
Sbjct: 957 LRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQHTALGSGFDVAMKDLELRGTGNL 1016
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G++Q+G + VG DL+ M+ E++ K E V V ID+ + LP +YI
Sbjct: 1017 LGDEQSGHIEGVGFDLYVRMVSEAVEKYKEPE--RVEPVCVTIDLPVEASLPVDYI--AS 1072
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
+ + + + AA +D L + + L ++G P E L +R A +IGIT+I
Sbjct: 1073 DKLRLEAYRKLAAAKDNSDLRELHDELLDRFGNPPEEFESLCDVARLRFKAREIGITQIS 1132
Query: 570 ASGKMV 575
+ GK V
Sbjct: 1133 SQGKSV 1138
>gi|423100943|ref|ZP_17088647.1| transcription-repair coupling factor [Listeria innocua ATCC 33091]
gi|370792479|gb|EHN60346.1| transcription-repair coupling factor [Listeria innocua ATCC 33091]
Length = 1179
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 241/627 (38%), Positives = 369/627 (58%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 560 EGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 618 EEAFPYQETDDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QH++ + ERF +P I++GLLSRF++K ++ E L +K+G ++I+VGTH
Sbjct: 677 AFLVPTTILAQQHYETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDIVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLLVVDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVEYQDLGLLVVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 856 MVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 1032
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 1033 PEYYITDGRQKIEMYKRFRNI--ESLLDLEDLQSDMIDRFGEYPEEVEYLFTMTELKVHA 1090
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++G IT +++ G++ ++ ++ F M+ + EG
Sbjct: 1091 LEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----------GVGMEGT 1140
Query: 608 QIKAELLLELPREQLLNWIFQC--LAE 632
Q+K + + + + L W++Q LAE
Sbjct: 1141 QLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|283783133|ref|YP_003373887.1| transcription-repair coupling factor [Gardnerella vaginalis 409-05]
gi|283441749|gb|ADB14215.1| transcription-repair coupling factor [Gardnerella vaginalis 409-05]
Length = 1202
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/546 (40%), Positives = 336/546 (61%), Gaps = 8/546 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYE 89
L+KL + W + K K K + ++ +L++LY R + + + K+ P E FPY+
Sbjct: 600 LNKLGGSD-WAQTKAKAKKHVHEIAENLIKLYSARQQSRGFAFSKDTPWQKELEDAFPYQ 658
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
T DQ +V+ D+ E PMDRLICGDVGFGKTE+ALRA F V KQ +VL PT
Sbjct: 659 ETADQLTTIDEVKADM-ENPIPMDRLICGDVGFGKTEIALRAAFKAVQDSKQVVVLVPTT 717
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+L +QH++ + RF +P +KV +SRFQ+ E EE L ++ G +++++GTH LL +
Sbjct: 718 LLVQQHYETFTNRFEGFP-VKVAAMSRFQTSKEIEETLAGLQDGSIDVVIGTHKLLNPSI 776
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGL+++DEEQRFGV+ KE + + + +VDVL+LSATPIPRTL +A+TG R+ S ++T
Sbjct: 777 KFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLAT 836
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP +RLP+ T++ A+ +V + IK EL RGGQVFYV R++ + +Q+ P V +
Sbjct: 837 PPEDRLPVLTYVGAYDNSQVAACIKRELLRGGQVFYVHNRVEDISSVASKIQELVPDVRV 896
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
AIAHG+ +QL+ + F I +L+CT I+E+GLDI NANT+IV +FGL+QL+Q
Sbjct: 897 AIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 956
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR + A+AY Y ++ Q+ +RL+ + + LG GF +A KD+ +RG G +
Sbjct: 957 LRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQHTALGSGFDVAMKDLELRGTGNL 1016
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G++Q+G + VG DL+ M+ E++ K E V V ID+ + LP +YI
Sbjct: 1017 LGDEQSGHIEGVGFDLYVRMVSEAVEKYKEPE--RVEPVCVTIDLPVEASLPVDYI--AS 1072
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
+ + + + AA +D L + + L ++G P E L +R A +IGIT+I
Sbjct: 1073 DKLRLEAYRKLAAAKDNSDLQELHDELLDRFGNPPEEFESLCDVARLRFKAREIGITQIS 1132
Query: 570 ASGKMV 575
+ GK V
Sbjct: 1133 SQGKSV 1138
>gi|258612325|ref|ZP_05711832.1| transcription-repair coupling factor [Listeria monocytogenes F6900]
gi|258610889|gb|EEW23497.1| transcription-repair coupling factor [Listeria monocytogenes F6900]
Length = 709
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/627 (38%), Positives = 369/627 (58%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 90 EGKSPR-LNKLG-GAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 147
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 148 EEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 206
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K+G ++++VGTH
Sbjct: 207 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTH 265
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 266 RLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 325
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 326 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 385
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 386 MVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 445
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 446 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 505
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 506 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 562
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 563 PEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHA 620
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++G IT +++ G++ ++ ++ F M+ + EG
Sbjct: 621 LEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----------GVGMEGT 670
Query: 608 QIKAELLLELPREQLLNWIFQC--LAE 632
Q+K + + + + L W++Q LAE
Sbjct: 671 QLK--ITINVQNKPLKEWLYQVKSLAE 695
>gi|366090577|ref|ZP_09456943.1| transcription-repair coupling factor [Lactobacillus acidipiscis KCTC
13900]
Length = 1176
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 233/573 (40%), Positives = 350/573 (61%), Gaps = 30/573 (5%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
+E K P ++KL + W + K + I+ + DL++LY R +K + K+ + E
Sbjct: 554 SEAKTPH-INKLG-GSEWTKTKKRVAGKIEDIADDLVDLYAKREAEKGFAFSKDTSYQRE 611
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY TPDQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVA+RA F + GKQ
Sbjct: 612 FEDAFPYTETPDQLRSADEIKRDM-EKEKPMDRLLIGDVGYGKTEVAMRAAFKAIQDGKQ 670
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
LAPT VLA+QH++ + ERF+ +P +++GLLSRF +K + + + + G +I+VGT
Sbjct: 671 VAFLAPTTVLAQQHYETLGERFTGFP-VEIGLLSRFVTKKQSDLTIKDAREGMCDILVGT 729
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V + +LGLL+VDEEQRFGVK KEK+ K +VDVLTL+ATPIPRTL +++ G
Sbjct: 730 HRLLSKDVKFADLGLLIVDEEQRFGVKHKEKLKQLKTNVDVLTLTATPIPRTLNMSMLGV 789
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I T P R PI+T++ + V+ AI+ E+ RGGQVFY+ R+ +E+ D LQ
Sbjct: 790 RDLSVIETAPMNRYPIQTYVMEQNYGVVVDAIRREMSRGGQVFYLHNRVMDIEKVADELQ 849
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P IA HGQ Q+E + F G +L+ T I+E+G+DI NANT+ V++ +
Sbjct: 850 ALVPDARIAYIHGQMSENQMERILYNFINGEYDVLVTTTIIETGVDIPNANTLFVENADR 909
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GLAQLYQLRGRVGR+ + A++Y Y +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 910 MGLAQLYQLRGRVGRSSRVAYSYFMYQQDKILNEVSEKRLEAIKDFTELGSGFKIAMRDL 969
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS-----KVDEHCVISVPYKSVQIDINI 496
IRG G I G+QQ G + +VG DL+ +ML ES++ KV E +I++++
Sbjct: 970 SIRGAGNILGKQQHGFIDSVGYDLYTQMLSESVARKRGKKVQEKT-------DTEINLDV 1022
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
LP YI +E+ + +D + +Q + L ++G+ P + ILL
Sbjct: 1023 EAYLPGTYIEDPRQKIEIYKRVRQLQSKDEYLEVQ--DDLIDRFGEYPVEVAILL----- 1075
Query: 557 RRMAADIGITKIYASGKMV-GMKTNMNKKVFKM 588
DIG+ K+YA MV +K N K V ++
Sbjct: 1076 -----DIGLLKMYADQAMVDSIKQNGKKIVIEL 1103
>gi|16799323|ref|NP_469591.1| transcription-repair coupling factor [Listeria innocua Clip11262]
gi|16412675|emb|CAC95479.1| transcription-repair coupling factor [Listeria innocua Clip11262]
Length = 1179
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 241/627 (38%), Positives = 369/627 (58%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 560 EGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 618 EEAFPYQETDDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QH++ + ERF +P I++GLLSRF++K ++ E L +K+G ++I+VGTH
Sbjct: 677 AFLVPTTILAQQHYETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDIVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLLVVDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVEYQDLGLLVVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 856 MVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 1032
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 1033 PEYYITDGRQKIEMYKRFRNI--ESLLDLEDLQSDMIDRFGEYPEEVEYLFTMTELKVHA 1090
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++G IT +++ G++ ++ ++ F M+ + EG
Sbjct: 1091 LEVGIESVEQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----------GVGMEGT 1140
Query: 608 QIKAELLLELPREQLLNWIFQC--LAE 632
Q+K + + + + L W++Q LAE
Sbjct: 1141 QLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|406667822|ref|ZP_11075574.1| Transcription-repair-coupling factor [Bacillus isronensis B3W22]
gi|405384337|gb|EKB43784.1| Transcription-repair-coupling factor [Bacillus isronensis B3W22]
Length = 1170
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 227/559 (40%), Positives = 346/559 (61%), Gaps = 8/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
+ P+ K P+ L KL T W++ K A+Q + DL++LY R +K + P +
Sbjct: 552 YVPSGEKEPK-LHKLGGT-EWKKTHKKVSNAVQDIADDLIKLYAKREAEKGYAFSPDSDE 609
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F A FPYE T DQ + +V++D+ ERE PMDRL+CGDVG+GKTEVA+RA F +
Sbjct: 610 QRGFEAAFPYEETEDQLRTIAEVKKDM-ERERPMDRLVCGDVGYGKTEVAIRAAFKAILD 668
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ +S+RF Y I VGLLSRF+SK ++ E L +K G ++I+
Sbjct: 669 GKQVAFLVPTTILAQQHYETISKRFEDYA-INVGLLSRFRSKKQQTETLKGLKEGTVDIV 727
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +L VVY +LGLL+VDEEQRFGV KEKI + +VDVLTL+ATPIPRTL++++
Sbjct: 728 IGTHRILSKDVVYQDLGLLIVDEEQRFGVTHKEKIKQLRTNVDVLTLTATPIPRTLHMSM 787
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + V AI+ E+ RGGQVFY+ R++ + ++
Sbjct: 788 VGVRDLSVIETPPQNRFPVQTYVMEHNGALVREAIEREMARGGQVFYLYNRVEDITRRVE 847
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+Q P +A AHG+ +LE + F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 848 EIQMLVPDARVAFAHGKMTEAKLESVILSFIEGEYDVLVTTTIIETGVDIPNVNTLIVHD 907
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A
Sbjct: 908 ADRMGLSQLYQLRGRVGRSNRIAYAYFMYERDKVLTEVAEQRLQAVKEFTELGSGFKIAM 967
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + ++G DL+ +ML E++ + V + V+I ++++
Sbjct: 968 RDLSIRGAGNLLGAQQHGFIDSIGFDLYSQMLEEAVEE-RRTGVKREEKQDVEIMLHVDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P YI ++M KA E+ I + L+ ++G P E L++ ++
Sbjct: 1027 YIPDAYIPDGYQKIQMYKRI-KAMER-IEDYSGIIDELQDRFGDLPVETERLMRVARMKV 1084
Query: 559 MAADIGITKIYASGKMVGM 577
A + + I ++V +
Sbjct: 1085 WAKEANVLSIKEKQQVVSI 1103
>gi|403389192|ref|ZP_10931249.1| transcription-repair coupling factor [Clostridium sp. JC122]
Length = 1174
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/538 (40%), Positives = 349/538 (64%), Gaps = 8/538 (1%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQF 86
P ++KL + W + KTK K +I+ + DL++LY R + K + K+ +F +F
Sbjct: 567 PPKVNKLG-GSEWIKAKTKVKKSIEDIAEDLVKLYATRAQIKGHKFGKDTVWQKQFEDEF 625
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
P++ TPDQ + D+++D+ E + PMDRL+CGDVG+GKTEVALRA F V GKQ L
Sbjct: 626 PFQETPDQLTSIEDIKKDM-ESDKPMDRLLCGDVGYGKTEVALRAAFKCVMEGKQVAFLV 684
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA+QH+ + +RFS +P +KV ++SRF++ + +E L +K G+++I+VGTH LL
Sbjct: 685 PTTILAQQHYKNMVKRFSDFP-LKVDMVSRFRTSGQIKETLKKLKEGNVDILVGTHRLLQ 743
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
V + +LGLL+VDEEQRFGV KEKI + K +V+VLTLSATPIPRTL+++LTG RD S+
Sbjct: 744 KDVQFKDLGLLIVDEEQRFGVTHKEKIKNLKKNVEVLTLSATPIPRTLHMSLTGVRDISV 803
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I TPP +R P++T++ F+++ + AI EL+R GQ+ +V R++ +++ +LQ+ P
Sbjct: 804 IETPPEDRYPVQTYVVEFNEQLIRDAIMRELNRDGQILFVYNRVETIKDMAAYLQKLVPE 863
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
I I HGQ ++LE+ + F +L+CT I+E+G+DIQNANT+I+ D + GL+Q
Sbjct: 864 ARIGIGHGQMTEKELEKVILDFTDYKYDMLVCTTIIETGIDIQNANTMIIYDADRMGLSQ 923
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
LYQLRGRVGR+++ A+AY Y +L++ A +RL A+++ ELG GF++A +D+ IRG
Sbjct: 924 LYQLRGRVGRSNRIAYAYFTYTKDKVLTEVAEKRLKAIKDFTELGSGFKIAMRDLEIRGA 983
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
G I G Q G + VG DL+ ML +S+ K+ + + + P ++ +D+ I+ +PS YI
Sbjct: 984 GNIMGSSQHGHMAVVGYDLYCRMLEDSI-KLIKGDIENEPIETT-VDLKIDAFIPSNYIV 1041
Query: 507 HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
+E+ + D +M+ E + ++ P ++ L+ Y++ +A ++G
Sbjct: 1042 DETQKIEVYKKIASIDSYD--YMMELQEEIEDRFSDIPPTVYNLMNIAYLKFLAKEVG 1097
>gi|307718846|ref|YP_003874378.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
6192]
gi|306532571|gb|ADN02105.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
6192]
Length = 1127
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 236/604 (39%), Positives = 370/604 (61%), Gaps = 24/604 (3%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQF 86
PR L KL +++W++RK + K +++ + L+ +Y R +P + EF A+F
Sbjct: 527 PR-LDKLG-SSSWQKRKERVKKSVEDLAKRLLAIYSRRKLAHGFAFPPDTEWQMEFEARF 584
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
P+E T DQ + +V+RD+ E PMDRL+CGDVGFGKTE+ALRA F V+AGKQ +LA
Sbjct: 585 PFEETEDQLRCIEEVKRDM-ESPRPMDRLVCGDVGFGKTEIALRAAFKAVTAGKQVAILA 643
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +L +QH++ ER +P ++ +LSRF E+ E L ++ G ++I++GTH +L
Sbjct: 644 PTTILVEQHYETFQERLEGFP-VRAAMLSRFVPVPEQREILKDLREGKVDILIGTHRILQ 702
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
VV+ +LGLLV+DEEQRFGVK KE++ K SVD LTL+ATPIPRTL+++L RD SL
Sbjct: 703 KDVVFKDLGLLVIDEEQRFGVKDKERLKELKASVDCLTLTATPIPRTLHMSLLKIRDISL 762
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
+ TPP ER PI+TH+ FS+E + AI+ E++RGGQVFY+ R++ L + F+++ P
Sbjct: 763 LETPPRERRPIETHILEFSEEIIARAIRREVERGGQVFYLHNRVETLPQVKTFIERLVPE 822
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
V + +AHG+ S QLEE M +F G +L+ T I+E+G++I NANTII+ +G+AQ
Sbjct: 823 VMVEVAHGKMSSHQLEEIMHRFIHGGFHVLVSTTIIENGINIPNANTIIIDRADMYGIAQ 882
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
LYQLRGRVGR+D+ A+AYLFYP + +S+ A +RL + + ELG GF++A KD+ +RG
Sbjct: 883 LYQLRGRVGRSDRTAYAYLFYPAQREISELAAKRLQVIADHTELGAGFKVALKDLEVRGA 942
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
G + G +Q+GD+ +VG D++ +L E++ ++++ + V +++ +P YI
Sbjct: 943 GNLLGREQSGDIHSVGFDMYLRLLDEAIRELEQKEERPE--EEVYLELEYTGFIPDSYIQ 1000
Query: 507 HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEP---------YSMEILLKKLYVR 557
+ M + + ++ +Q E L +YG P ++IL KKL +R
Sbjct: 1001 EPQEKMVVYKKIVSVRTEEDLAAVQ--EELEDRYGPLPPEVASLLGIAELQILAKKLAIR 1058
Query: 558 RMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHR-NSLTFEGDQI----KAE 612
+ G ++ GK+ + + ++ + + + HR + L GD + KAE
Sbjct: 1059 AIRERKGEVEV-EFGKVSLLSPDKVLRLIREGKGRIRLDAHRPHVLRLTGDSVGLKEKAE 1117
Query: 613 LLLE 616
L++
Sbjct: 1118 YLVQ 1121
>gi|415883948|ref|ZP_11545977.1| transcription-repair coupling factor [Bacillus methanolicus MGA3]
gi|387591743|gb|EIJ84060.1| transcription-repair coupling factor [Bacillus methanolicus MGA3]
Length = 1176
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/547 (40%), Positives = 344/547 (62%), Gaps = 14/547 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ + KL + W+R K K K ++Q + DL++LY R + + P E
Sbjct: 558 SEGKEPK-IYKLGGSD-WKRVKNKVKSSVQNIADDLIKLYAEREAARGYAFSPDGEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ ++ +++RD+ ERE PMDRL+CGDVG+GKTEVALRA F ++ GKQ
Sbjct: 616 FEAAFPYQETEDQLRSIHEIKRDM-ERERPMDRLLCGDVGYGKTEVALRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF YP IK+GLLSRF+++ ++ E L +K G ++I+VGT
Sbjct: 675 VAFLVPTTILAQQHYETMKERFQDYP-IKIGLLSRFRTRKQQTETLKGLKDGTIDIVVGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VV+ +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVFRDLGLLIIDEEQRFGVAHKEKIKQLKTNIDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E + +
Sbjct: 794 RDLSVIETPPENRFPVQTYVLEYNGGLVKEAIERELARGGQVYFLYNRVEDIERKAEEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDARVVYAHGKMSENELESVMLTFIEGEADVLVSTTIIETGVDIPNVNTLIVYDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-VQIDININPRL 500
IRG G + G +Q G + +VG DL+ +ML E++ + + P ++ ++ID+ ++ +
Sbjct: 974 SIRGAGNLLGAEQHGFIDSVGFDLYSQMLKEAIEERKGNN--EQPKRTQLEIDLEVDAYI 1031
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEP----YSMEILLKKLYV 556
P YI +EM + D + + E + ++G+ P Y +I K+Y
Sbjct: 1032 PDSYIADGHQKIEMYKRFRAISSLD--DIEELQEEMIDRFGEYPDEVAYLFQIAEMKVYG 1089
Query: 557 RRMAADI 563
+ +I
Sbjct: 1090 QLAGVEI 1096
>gi|170759697|ref|YP_001788879.1| transcription-repair coupling factor [Clostridium botulinum A3 str.
Loch Maree]
gi|169406686|gb|ACA55097.1| transcription-repair coupling factor [Clostridium botulinum A3 str.
Loch Maree]
Length = 1168
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 229/614 (37%), Positives = 373/614 (60%), Gaps = 26/614 (4%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K+P+ ++KL ++ W + K K K +I+++ DL++LY R K Y + +
Sbjct: 559 SEGKKPK-VNKLG-SSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGYKYSDDTVWQKQ 616
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F +FPYE TPDQ A D++RD+ E PMDRL+CGDVG+GKTEVA+RA F V GKQ
Sbjct: 617 FEEEFPYEETPDQLLAIEDIKRDM-ESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQ 675
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ +RFS +P I V ++SRF++ +E++ + IK G+++I++GT
Sbjct: 676 VAFLVPTTILAQQHYNNFKQRFSDFP-ITVDVISRFRTLSEQKATIKSIKEGNVDILIGT 734
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + + +LGLL++DEEQRFGVK KEK+ + K +VDVLTLSATPIPRTL+++L G
Sbjct: 735 HRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGV 794
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP ER P++T++ ++ + + +I E+ RGGQ+++V R++ + E ++
Sbjct: 795 RDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVYNRVESIHEMASYIS 854
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P + IAHGQ ++LE + F + ILI T I+E+G+DI+N NT+I+ D +
Sbjct: 855 KLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADK 914
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A+++ ELG GF++A KD+
Sbjct: 915 MGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALKDL 974
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDININ 497
IRG G + G Q G + ++G DL+ ML +++ +D+ V +++ I+
Sbjct: 975 EIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPV------ETSVELKID 1028
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+P+ YI +E+ + ++ + M E L ++ P S+ L+ Y+R
Sbjct: 1029 AYIPNTYIKDETQKIEVYKKIASIDSKEEF--MDIEEELEDRFSDIPISVYNLMNISYIR 1086
Query: 558 RMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV-----HRNSLTFEGDQ 608
+ + I +I V K+++ +K+ K+++D + EV + ++ +
Sbjct: 1087 SLGKKLDIEEIKEISNEVVFQFEDKSSLREKIVKIIMDKYSKEVAFKLNEKPAIGYNIKN 1146
Query: 609 IKAELLLELPREQL 622
IK E LL + R L
Sbjct: 1147 IKKEQLLPIIRNFL 1160
>gi|418559593|ref|ZP_13124131.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21252]
gi|371974613|gb|EHO91933.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21252]
Length = 1168
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/559 (39%), Positives = 353/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHSFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>gi|23097518|ref|NP_690984.1| transcription-repair coupling factor [Oceanobacillus iheyensis
HTE831]
gi|22775741|dbj|BAC12019.1| transcription-repair coupling factor (TRCF) [Oceanobacillus iheyensis
HTE831]
Length = 1173
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/629 (37%), Positives = 374/629 (59%), Gaps = 23/629 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPA 78
F +E K P+ L KL T W + K K + +++ + DL++LY R KQ P +
Sbjct: 555 FVGSEAKEPK-LYKLG-GTEWTKVKRKVQSSVEDIADDLIKLYAEREAKQGYAFSPDSEL 612
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF A FPY+ T DQ + +++ D+ E+E PMDRL+CGDVG+GKTEVA+RA F +S
Sbjct: 613 QHEFEASFPYQETDDQLRCIQEIKEDM-EKERPMDRLLCGDVGYGKTEVAIRAAFKAISD 671
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF++K ++ E +K G+++++
Sbjct: 672 GKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTKKQQTETTKGLKSGNVDVV 730
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH +L V Y +LGLL+VDEEQRFGVK KEKI K +VDVLTL+ATPIPRTL++++
Sbjct: 731 VGTHRILSKDVEYKDLGLLIVDEEQRFGVKHKEKIKQLKTNVDVLTLTATPIPRTLHMSM 790
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T+++ ++ + AI+ E+ RGGQVF++ R++ +++
Sbjct: 791 LGVRDLSVIETPPENRFPIQTYVTEYNPIFMREAIEREMGRGGQVFFLYNRVESIDKIAR 850
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L P IA+AHGQ +LE + F +G IL+ T I+E+G+DI N NT+IV
Sbjct: 851 DLGMLVPEAKIAVAHGQMNESELENVIFSFLEGEFDILVSTTIIETGVDIPNVNTLIVNH 910
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A
Sbjct: 911 ADYMGLSQLYQLRGRVGRSNRVAYAYFTYQKDKVLTEVAEKRLQAIKEFTELGSGFKIAM 970
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDINI 496
+D+ IRG G + G QQ G + +VG D++ +ML +++ K + P++ ++ + +
Sbjct: 971 RDLSIRGTGNLLGSQQHGFIDSVGFDMYSQMLKDAIDARKAGKEIEEITPFEP-ELSLKL 1029
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
+ +P EY+ + +E+ + + Q+ + + L ++G P +E L
Sbjct: 1030 DAYIPDEYLEDEKQKIEIYKQFQTLDSQE--AIGDLKDELIDRFGDYPQEVEHLFT---- 1083
Query: 557 RRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLE 616
+ K+YA + V KK+ ++ +S + E+ + L ++ ++ L
Sbjct: 1084 ------VSEMKMYAKTQRVESILETPKKIEMLIDESRSQEIDGSKLFALANEYGRDIGLG 1137
Query: 617 LPREQL---LNWIFQCLAELYASLPALIK 642
++L + W + Y ++ + IK
Sbjct: 1138 TDNQKLKIGIKWSKDSKYKRYETVTSFIK 1166
>gi|333896011|ref|YP_004469885.1| transcription-repair coupling factor [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111276|gb|AEF16213.1| transcription-repair coupling factor [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 1166
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 230/582 (39%), Positives = 361/582 (62%), Gaps = 11/582 (1%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQ 85
+P L+KL ++ W + K + K A++ + DL++LY R K + K+ P +F +
Sbjct: 561 KPPKLNKLG-SSDWSKLKKRAKKAVEDIAKDLIKLYAKRQTMKGYAFSKDTPWQKDFEEK 619
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
FPYE T DQ + ++++D+ E + PMDRL+CGDVG+GKTEVALRA F V+ GKQ L
Sbjct: 620 FPYEETEDQLRCIEEIKKDM-ESDKPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVAFL 678
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA+QH++ +RF +P +K+ +LSRF+S E+ + + M+ G ++I+VGTH +L
Sbjct: 679 CPTTILAEQHYNNFVQRFKDFP-VKIEMLSRFRSNKEQSQIIKMVADGTVDILVGTHKIL 737
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
+ V + +LGLL++DEEQRFGVK KEKI K ++DVL+LSATPIPRTL+++L G RD S
Sbjct: 738 QNDVKFKDLGLLIIDEEQRFGVKHKEKIKKLKENIDVLSLSATPIPRTLHMSLIGIRDMS 797
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
++ PP +R P++T++ F+++ + AI EL RGGQV++V RI G+E L++ P
Sbjct: 798 VLENPPEDRYPVQTYVVEFNEDLIRDAILRELGRGGQVYFVYNRIDGIERIASILKELVP 857
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
IA+AHGQ +LE+ M F IL+CT I+E+GLDI N NTIIV D + GL+
Sbjct: 858 EARIAVAHGQMDEGKLEDIMIGFLNREYDILVCTTIIETGLDIPNVNTIIVYDSDKMGLS 917
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
QLYQLRGRVGR+++ A+AY Y ++S+ A +RL A++E E G GF++A +D+ IRG
Sbjct: 918 QLYQLRGRVGRSNRLAYAYFTYRKDKVISEVAEKRLEAIKEFTEFGSGFKIAMRDLEIRG 977
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYI 505
G + G +Q G + VG D++ +L E++ + P + IDI ++ + EYI
Sbjct: 978 AGNLLGAEQHGHIDAVGYDMYLRLLDEAIKNLKGVSEEDKP--NTAIDIKVSAYIDKEYI 1035
Query: 506 NHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
+E+ + E+D+ + + L ++ + P ++E L+ Y++ +A D
Sbjct: 1036 EDENQRLEIYKKISSIENEKDVEDI---KDELIDRFKEYPKAVEALIDVAYLKALARDAN 1092
Query: 565 ITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 606
I +I G V +K NK + ++D++ +E + + F G
Sbjct: 1093 ILEITERGNSVILKFKDNKSINSSIVDALVNE-FKGKIMFSG 1133
>gi|47096207|ref|ZP_00233806.1| transcription-repair coupling factor [Listeria monocytogenes str.
1/2a F6854]
gi|254913931|ref|ZP_05263943.1| transcription-repair coupling factor [Listeria monocytogenes J2818]
gi|386045852|ref|YP_005964184.1| transcription-repair coupling factor [Listeria monocytogenes J0161]
gi|386052491|ref|YP_005970049.1| transcription-repair coupling factor [Listeria monocytogenes Finland
1998]
gi|404412314|ref|YP_006697901.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC7179]
gi|47015455|gb|EAL06389.1| transcription-repair coupling factor [Listeria monocytogenes str.
1/2a F6854]
gi|293591949|gb|EFG00284.1| transcription-repair coupling factor [Listeria monocytogenes J2818]
gi|345532843|gb|AEO02284.1| transcription-repair coupling factor [Listeria monocytogenes J0161]
gi|346645142|gb|AEO37767.1| transcription-repair coupling factor [Listeria monocytogenes Finland
1998]
gi|404238013|emb|CBY59414.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC7179]
Length = 1179
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/627 (38%), Positives = 369/627 (58%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 560 EGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 618 EEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K+G ++++VGTH
Sbjct: 677 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 856 MVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 1032
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 1033 PEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHA 1090
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++G IT +++ G++ ++ ++ F M+ + EG
Sbjct: 1091 LEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----------GVGMEGT 1140
Query: 608 QIKAELLLELPREQLLNWIFQC--LAE 632
Q+K + + + + L W++Q LAE
Sbjct: 1141 QLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|16802260|ref|NP_463745.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e]
gi|284803047|ref|YP_003414912.1| transcription-repair coupling factor [Listeria monocytogenes 08-5578]
gi|284996188|ref|YP_003417956.1| transcription-repair coupling factor [Listeria monocytogenes 08-5923]
gi|386049143|ref|YP_005967134.1| transcription-repair coupling factor [Listeria monocytogenes FSL
R2-561]
gi|405757201|ref|YP_006686477.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2479]
gi|16409579|emb|CAD00741.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e]
gi|284058609|gb|ADB69550.1| transcription-repair coupling factor [Listeria monocytogenes 08-5578]
gi|284061655|gb|ADB72594.1| transcription-repair coupling factor [Listeria monocytogenes 08-5923]
gi|346422989|gb|AEO24514.1| transcription-repair coupling factor [Listeria monocytogenes FSL
R2-561]
gi|404235083|emb|CBY56485.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2479]
Length = 1179
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/627 (38%), Positives = 369/627 (58%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 560 EGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 618 EEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K+G ++++VGTH
Sbjct: 677 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 856 MVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 1032
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 1033 PEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVRA 1090
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++G IT +++ G++ ++ ++ F M+ + EG
Sbjct: 1091 LEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----------GVGMEGT 1140
Query: 608 QIKAELLLELPREQLLNWIFQC--LAE 632
Q+K + + + + L W++Q LAE
Sbjct: 1141 QLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|219850580|ref|YP_002465013.1| transcription-repair coupling factor [Chloroflexus aggregans DSM
9485]
gi|219544839|gb|ACL26577.1| transcription-repair coupling factor [Chloroflexus aggregans DSM
9485]
Length = 1182
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/462 (46%), Positives = 304/462 (65%), Gaps = 12/462 (2%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAA 84
P TL++L T WER K K + A+Q++ +L+ LY R Q +P + P N E A
Sbjct: 552 PPTLTRLG-TQDWERTKRKVRAAVQELAEELLHLYAQR--QLKPGFAFSPDNEWQRELEA 608
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
FPY T DQ +A +V+ D+ ER PMDRL+CGDVGFGKTEVALRA F V GKQ +
Sbjct: 609 SFPYLETDDQLRAIAEVKADM-ERPIPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAI 667
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
L PT VLA+QHFD +R + +P + V +LSRF+S E++ + + G ++II+GTH L
Sbjct: 668 LVPTTVLAQQHFDTFRKRMAAFP-VTVEMLSRFRSPKEQDGIVRDLARGKIDIIIGTHRL 726
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264
L + VV+ +LGL++VDEEQRFGV+ KE++ + VDVLTL+ATPIPRTL++AL+G RD
Sbjct: 727 LSNDVVFRDLGLVIVDEEQRFGVRHKERLKQLRAEVDVLTLTATPIPRTLHMALSGIRDL 786
Query: 265 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 324
S+I+TPP +RLPIKT++ + I+ EL+R GQV++V R++ + + L++
Sbjct: 787 SVINTPPEDRLPIKTYVVPADDHLIQEVIRRELEREGQVYFVHNRVQSIYHVAERLRRLV 846
Query: 325 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 384
P IA+ HGQ R LE M F +G +L+CT I+ESGLD+ NANTII+ D +GL
Sbjct: 847 PEARIAVGHGQLAERNLERVMMDFFEGRYDVLVCTTIIESGLDVPNANTIIIDDATHYGL 906
Query: 385 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIR 444
AQLYQLRGRVGR A+AYL Y + ++ A +RL A++E ELG GF++A +D+ IR
Sbjct: 907 AQLYQLRGRVGRGATRAYAYLLYNPAAPMTSDARQRLEAIQEATELGAGFRVAMRDLEIR 966
Query: 445 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCV 482
G G + G +Q+G + VG DL+ +L +++ + VDE V
Sbjct: 967 GAGNLLGSEQSGHIAAVGFDLYSRLLEQAVQQLKRDVDELTV 1008
>gi|260060951|ref|YP_003194031.1| transcription-repair coupling factor [Robiginitalea biformata
HTCC2501]
gi|88785083|gb|EAR16252.1| transcription-repair coupling factor [Robiginitalea biformata
HTCC2501]
Length = 1121
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/553 (40%), Positives = 336/553 (60%), Gaps = 18/553 (3%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYL-HRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQK 95
+ AW++ K K K ++K+ DL+++Y R+K+ P + E A F YE TPDQ
Sbjct: 503 SAAWKKLKAKTKSRVKKIAFDLIQVYAKRRMKKGFSHAPDSYLQHELEASFVYEDTPDQS 562
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
A V+ D+ E E PMDRLICGDVGFGKTEVA+RA F V GKQ VL PT +LA QH
Sbjct: 563 TATEAVKADM-ESERPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQH 621
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
F ER ++ P + V L+RF+S E+ L+ +K G L+I++GTH L+G +V + +LG
Sbjct: 622 FRTFGERLAEMP-VTVDYLNRFRSAKERRTLLENLKSGKLDIVIGTHQLVGKQVEFKDLG 680
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL+VDEEQ+FGV K+K+ S K +DVLTL+ATPIPRTL +L RD S+I+TPPP R
Sbjct: 681 LLIVDEEQKFGVSVKDKLKSLKEHIDVLTLTATPIPRTLQFSLMAARDLSVINTPPPNRY 740
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
PI++ + F +E + AI+YE+ RGGQVF+V RI+ + E +Q+ P + I HGQ
Sbjct: 741 PIESRVVRFGEEVIRDAIRYEIQRGGQVFFVHNRIENIAEVAGLIQRLVPDARVGIGHGQ 800
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
++LE+ M F G +L+ T I+ESGLD+ NANTI++ + FGL+ L+Q+RGRVG
Sbjct: 801 MEGKKLEKLMLDFMNGEFDVLVSTTIIESGLDVTNANTILINNANNFGLSDLHQMRGRVG 860
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A Y P +++ +A +R+ ALE+ ELG GF +A KD+ IRG G + G +Q+
Sbjct: 861 RSNKKAFCYFITPPYHVMTAEARKRMEALEQYTELGSGFNIAMKDLEIRGAGDLLGGEQS 920
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISV----------PYKSVQIDININPRLPSEYI 505
G + +G + + ++L E++ ++ ++ + + QID + P +YI
Sbjct: 921 GFINEIGFETYQKILAEAIDELKDNEFKDLYRETEGPRQQYVRDCQIDTDFELLFPDDYI 980
Query: 506 NHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
N + + + E + E+D L F L ++G P LL+ + ++ MA +G
Sbjct: 981 NSVSERLSLYTELNDTDNEED---LAAFRRKLEDRFGPLPEPASDLLESVRLKWMATALG 1037
Query: 565 ITKIY-ASGKMVG 576
+ KI GK++G
Sbjct: 1038 LEKIVMKKGKLIG 1050
>gi|399888052|ref|ZP_10773929.1| transcription-repair coupling factor [Clostridium arbusti SL206]
Length = 1172
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 225/593 (37%), Positives = 359/593 (60%), Gaps = 8/593 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQKKAF 98
W + K K K +I ++ +L++LY R Y K+ +F +FPY+ TPDQ A
Sbjct: 576 WNKAKNKVKKSINEIAEELVKLYAIRSTLNGYTYSKDTVWQKQFEEEFPYDETPDQISAI 635
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
D++ D+ E MDRLICGDVG+GKTEVA+R F V GKQ L PT +LA+QH+
Sbjct: 636 EDIKNDM-EIGKVMDRLICGDVGYGKTEVAIRTAFKAVMDGKQVAFLVPTTILAEQHYTN 694
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ +RF +P + V ++SRF++ A+++ + +K G+++I++GTH +L V++ +LGLL+
Sbjct: 695 LKKRFFDFP-VTVDMISRFRTSAQQKATIKSLKEGNIDILIGTHRILQKDVLFKDLGLLI 753
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
VDEEQRFGV KEKI + K ++DVLTL+ATPIPRTL+++LTG RD S++ TPP ER P++
Sbjct: 754 VDEEQRFGVTHKEKIKNLKRNIDVLTLTATPIPRTLHMSLTGVRDISVMETPPEERYPVQ 813
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + + A+ EL+RGGQVF+V R++ +++ L + P +A+AHGQ
Sbjct: 814 TYVVEYNDQLIRDAVMRELNRGGQVFFVYNRVETIKDMASKLSKLIPEAKVAVAHGQMTE 873
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
RQLE M F IL+CT I+E+G+DIQN NT+++ D + GL+QLYQLRGRVGR +
Sbjct: 874 RQLETEMFAFMNKEYDILLCTTIIETGIDIQNVNTMVIYDADKMGLSQLYQLRGRVGRTN 933
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A++E ELG GF++A +D+ IRG G + G Q G +
Sbjct: 934 RMAYAYFTYRKDKMLTEVAEKRLKAIKEFTELGSGFKIAMRDLEIRGAGNMMGSAQHGHM 993
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+G DL+ ML +++ + + + P ++ I++ ++ +PS YI + +E+ +
Sbjct: 994 AAIGYDLYCRMLEDAIKQY-KGDIEKEPIET-SIELKVDAYIPSSYIENEVQKIEIYKKI 1051
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMK 578
+D + +Q E L +Y P S+ L+ Y++ +A IGI + + + K
Sbjct: 1052 ASIESRDEFTDIQ--EELEDRYSNIPISVANLMDIAYIKSLARQIGIVDVRDRIESINFK 1109
Query: 579 TNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ-IKAELLLELPREQLLNWIFQCL 630
++ +I + R + D+ I L +L RE LLN + + L
Sbjct: 1110 FEDKDRITDKLIQGLIKNYKRRIVFKSEDKPIIVYNLRDLKRENLLNDLIELL 1162
>gi|52078550|ref|YP_077341.1| transcription-repair coupling factor [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|404487420|ref|YP_006711526.1| transcription-repair coupling factor [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52001761|gb|AAU21703.1| transcription-repair coupling factor [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52346414|gb|AAU39048.1| transcription-repair-coupling factor Mfd [Bacillus licheniformis DSM
13 = ATCC 14580]
Length = 1177
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 226/574 (39%), Positives = 351/574 (61%), Gaps = 19/574 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + E
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVESSVQDIADDLIKLYAEREASKGYAFSPDHEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ ++ +++RD+ E+E PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FEAAFPYQETEDQLRSIHEIKRDM-EKERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VAILVPTTILAQQHYETILERFQDYP-INIGLLSRFRTRKEANETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKRIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E + +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKAEEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVTYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + ++ +ID+ ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEARKGDAPQAEKFEP-EIDLELDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
Y+ + ++M A I + + + ++G+ P +E L
Sbjct: 1033 QTYVTDGKQKIDMYKRFR--AISTIEEKSELQDEMIDRFGEYPKEVEYLFA--------- 1081
Query: 562 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTS 595
I K+YA + V + +K ++ ID S
Sbjct: 1082 -IAEAKVYAIKERVEL-IKQDKDAVRLTIDEKAS 1113
>gi|168181008|ref|ZP_02615672.1| transcription-repair coupling factor [Clostridium botulinum NCTC
2916]
gi|226950995|ref|YP_002806086.1| transcription-repair coupling factor [Clostridium botulinum A2 str.
Kyoto]
gi|421834408|ref|ZP_16269459.1| transcription-repair coupling factor [Clostridium botulinum
CFSAN001627]
gi|182668078|gb|EDT80057.1| transcription-repair coupling factor [Clostridium botulinum NCTC
2916]
gi|226842319|gb|ACO84985.1| transcription-repair coupling factor [Clostridium botulinum A2 str.
Kyoto]
gi|409744195|gb|EKN42856.1| transcription-repair coupling factor [Clostridium botulinum
CFSAN001627]
Length = 1168
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 229/614 (37%), Positives = 371/614 (60%), Gaps = 26/614 (4%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K+P+ +SKL ++ W + K K K +I+++ DL++LY R K Y + +
Sbjct: 559 SEGKKPK-VSKLG-SSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGYKYSDDTVWQKQ 616
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F +FPYE TPDQ A D++RD+ E PMDRL+CGDVG+GKTEVA+RA F V GKQ
Sbjct: 617 FEEEFPYEETPDQLLAIEDIKRDM-ESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQ 675
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ +RF +P I V ++SRF++ +E++ + IK G+++I++GT
Sbjct: 676 VAFLVPTTILAQQHYNNFKQRFWDFP-ITVDVISRFRTLSEQKATIKSIKEGNVDILIGT 734
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + + +LGLL++DEEQRFGVK KEK+ + K +VDVLTLSATPIPRTL+++L G
Sbjct: 735 HRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGV 794
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP ER P++T++ ++ + + +I E+ RGGQ+++V R++ + E ++
Sbjct: 795 RDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVYNRVESIHEMASYIS 854
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P + IAHGQ ++LE + F + ILI T I+E+G+DI+N NT+I+ D +
Sbjct: 855 KLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADK 914
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A+++ ELG GF++A KD+
Sbjct: 915 MGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALKDL 974
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDININ 497
IRG G + G Q G + ++G DL+ ML +++ +D+ V +++ I+
Sbjct: 975 EIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPV------ETSVELKID 1028
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+P+ YI +E+ + ++ M E L ++ P S+ L+ Y+R
Sbjct: 1029 AYIPNTYIKDETQKIEVYKKIASIDSKE--EFMDIEEELEDRFSDIPISVYNLMNISYIR 1086
Query: 558 RMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV-----HRNSLTFEGDQ 608
+ + I +I V K+++ +K+ K+++D + EV + ++ +
Sbjct: 1087 SLGKKVDIEEIKEISNEVVFQFEDKSSLREKIVKIIMDKYSKEVAFKLNEKPAIGYNIKN 1146
Query: 609 IKAELLLELPREQL 622
IK E LL + R L
Sbjct: 1147 IKKEQLLPIMRNFL 1160
>gi|386042551|ref|YP_005961356.1| transcription-repair coupling factor [Listeria monocytogenes 10403S]
gi|345535785|gb|AEO05225.1| transcription-repair coupling factor [Listeria monocytogenes 10403S]
Length = 1179
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/627 (38%), Positives = 369/627 (58%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 560 EGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 618 EEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K+G ++++VGTH
Sbjct: 677 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 856 MVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 1032
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 1033 PEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHA 1090
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++G IT +++ G++ ++ ++ F M+ + EG
Sbjct: 1091 LEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----------GVGMEGT 1140
Query: 608 QIKAELLLELPREQLLNWIFQC--LAE 632
Q+K + + + + L W++Q LAE
Sbjct: 1141 QLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|269926461|ref|YP_003323084.1| transcription-repair coupling factor [Thermobaculum terrenum ATCC
BAA-798]
gi|269790121|gb|ACZ42262.1| transcription-repair coupling factor [Thermobaculum terrenum ATCC
BAA-798]
Length = 1150
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 232/551 (42%), Positives = 341/551 (61%), Gaps = 7/551 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYE 89
LS+L T W R K + K A ++ +L++LY R K + P N EF + FPY
Sbjct: 543 LSRLG-TADWARTKRRAKKAADQLAKELLQLYAAREIAKGHSFSPDNELHKEFESAFPYV 601
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
T DQ A DV+ D+ E PMDRLICGDVG+GKTEVALRA F V+ GKQ VL PT
Sbjct: 602 ETDDQLAAIEDVKADM-ESPKPMDRLICGDVGYGKTEVALRAAFKAVADGKQVAVLVPTT 660
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
VLA QH++ RF+ + I+V +LSR ++K E+++ L+ ++ G+++I++GTH++L V
Sbjct: 661 VLALQHYETFRSRFNPF-GIRVEMLSRLRTKKERDQVLEDLQKGNVDIVIGTHTILQKNV 719
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
V+ +LGL++VDEEQRFGVK KE + + VDVLTL+ATPIPRTL +AL+G RD S+I T
Sbjct: 720 VFKDLGLVIVDEEQRFGVKHKETLKQIRTQVDVLTLTATPIPRTLQMALSGVRDMSVIET 779
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
P +RLP+ T++ + + +I EL+RGGQVFYV R++ + + LQ+ P I
Sbjct: 780 APEDRLPVYTYIVPKNDSIIRDSIIRELERGGQVFYVHNRVQDIYKVAHKLQEMVPEARI 839
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+AHGQ +QLE+ M F +L+CT I+ESGLDI NANT+IV D GLAQLYQ
Sbjct: 840 TVAHGQMPEQQLEQVMLDFMHHHYDVLVCTTIIESGLDIPNANTLIVDDATHMGLAQLYQ 899
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR+ A+AYL Y + +++ A +RL A+ E +LG GF++A KD+ IRG G
Sbjct: 900 LRGRVGRSSNRAYAYLMYRPDARMTEDAQKRLEAISEATQLGAGFRVAMKDLEIRGAGNF 959
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G +Q+G V +G++L+ +M+ ++ ++ IS P +V ID+ I +P Y++ +
Sbjct: 960 LGPEQSGHVYAIGLELYTQMIERAVQELRTGQPISEP-PAVTIDLPIPALIPEHYVSDRD 1018
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
+ + A+ L +R ++G P L+K + ++ +AA G+T I
Sbjct: 1019 TRIRLYRRL--ASTSTARELRSMESEMRDRFGPLPEEAINLIKLIDLKIVAAKAGVTAIR 1076
Query: 570 ASGKMVGMKTN 580
A+ V +KT+
Sbjct: 1077 AADNEVIIKTD 1087
>gi|404409447|ref|YP_006695035.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC5850]
gi|404229273|emb|CBY50677.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC5850]
Length = 1179
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/627 (38%), Positives = 369/627 (58%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 560 EGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 618 EEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K+G ++++VGTH
Sbjct: 677 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 856 MVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 1032
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 1033 PEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHA 1090
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++G IT +++ G++ ++ ++ F M+ + EG
Sbjct: 1091 LEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----------GVGMEGT 1140
Query: 608 QIKAELLLELPREQLLNWIFQC--LAE 632
Q+K + + + + L W++Q LAE
Sbjct: 1141 QLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|298253895|ref|ZP_06977482.1| transcription-repair coupling factor [Gardnerella vaginalis 5-1]
gi|297532038|gb|EFH71013.1| transcription-repair coupling factor [Gardnerella vaginalis 5-1]
Length = 1202
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/546 (40%), Positives = 336/546 (61%), Gaps = 8/546 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYE 89
L+KL + W + K K K + ++ +L++LY R + + + K+ P E FPY+
Sbjct: 600 LNKLGGSD-WAQTKAKAKKHVHEIAENLIKLYSARQQSRGFAFSKDTPWQKELEDAFPYQ 658
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
T DQ +V+ D+ E PMDRLICGDVGFGKTE+ALRA F V KQ +VL PT
Sbjct: 659 ETADQLTTIDEVKADM-ENPIPMDRLICGDVGFGKTEIALRAAFKAVQDSKQVVVLVPTT 717
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+L +QH++ + RF +P +KV +SRFQ+ E EE L ++ G +++++GTH LL +
Sbjct: 718 LLVQQHYETFTNRFEGFP-VKVAAMSRFQTSKEIEETLAGLQDGSIDVVIGTHKLLNPSI 776
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGL+++DEEQRFGV+ KE + + + +VDVL+LSATPIPRTL +A+TG R+ S ++T
Sbjct: 777 KFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLAT 836
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP +RLP+ T++ A+ +V + IK EL RGGQVFYV R++ + +Q+ P V +
Sbjct: 837 PPEDRLPVLTYVGAYDNSQVAACIKRELLRGGQVFYVHNRVEDISSVASKIQELVPDVRV 896
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
AIAHG+ +QL+ + F I +L+CT I+E+GLDI NANT+IV +FGL+QL+Q
Sbjct: 897 AIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQ 956
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR + A+AY Y ++ Q+ +RL+ + + LG GF +A KD+ +RG G +
Sbjct: 957 LRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQHTALGSGFDVAMKDLELRGTGNL 1016
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G++Q+G + VG DL+ M+ E++ K E V V ID+ + LP +YI
Sbjct: 1017 LGDEQSGHIEGVGFDLYVRMVSEAVEKYKEPE--RVEPVCVTIDLPVEASLPVDYI--AS 1072
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
+ + + + AA +D L + + L ++G P E L +R A +IGIT+I
Sbjct: 1073 DKLRLEAYRKLAAAKDNSDLRELHDELLDRFGNPPEEFESLCDVARLRFKAREIGITQIS 1132
Query: 570 ASGKMV 575
+ GK V
Sbjct: 1133 SQGKSV 1138
>gi|255520464|ref|ZP_05387701.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J1-175]
gi|405754296|ref|YP_006677760.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2540]
gi|404223496|emb|CBY74858.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2540]
Length = 1179
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/627 (38%), Positives = 369/627 (58%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 560 EGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 618 EEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K+G ++++VGTH
Sbjct: 677 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 856 MVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIESKKPKEEQKQIVP---VEIDIQADAYI 1032
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 1033 PEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHA 1090
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++G IT +++ G++ ++ ++ F M+ + EG
Sbjct: 1091 LEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----------GVGMEGT 1140
Query: 608 QIKAELLLELPREQLLNWIFQC--LAE 632
Q+K + + + + L W++Q LAE
Sbjct: 1141 QLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|319648579|ref|ZP_08002793.1| mfd protein [Bacillus sp. BT1B_CT2]
gi|423680448|ref|ZP_17655287.1| transcription-repair coupling factor [Bacillus licheniformis WX-02]
gi|317389346|gb|EFV70159.1| mfd protein [Bacillus sp. BT1B_CT2]
gi|383441554|gb|EID49263.1| transcription-repair coupling factor [Bacillus licheniformis WX-02]
Length = 1177
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 226/574 (39%), Positives = 351/574 (61%), Gaps = 19/574 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + E
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVESSVQDIADDLIKLYAEREASKGYAFSPDHEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ ++ +++RD+ E+E PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FEAAFPYQETEDQLRSIHEIKRDM-EKERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VAILVPTTILAQQHYETILERFQDYP-INIGLLSRFRTRKEANETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKRIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E + +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKAEEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVTYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + ++ +ID+ ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEARKGDAPQAEKFEP-EIDLELDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
Y+ + ++M A I + + + ++G+ P +E L
Sbjct: 1033 QTYVTDGKQKIDMYKRFR--AISTIEEKSELQDEMIDRFGEYPKEVEYLFA--------- 1081
Query: 562 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTS 595
I K+YA + V + +K ++ ID S
Sbjct: 1082 -IAEAKVYAIKERVEL-IKQDKDAVRLTIDEKAS 1113
>gi|46906446|ref|YP_012835.1| transcription-repair coupling factor [Listeria monocytogenes serotype
4b str. F2365]
gi|226222843|ref|YP_002756950.1| transcription-repair coupling factor [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|254825872|ref|ZP_05230873.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J1-194]
gi|254854444|ref|ZP_05243792.1| transcription-repair coupling factor [Listeria monocytogenes FSL
R2-503]
gi|254933054|ref|ZP_05266413.1| transcription-repair coupling factor [Listeria monocytogenes HPB2262]
gi|300766347|ref|ZP_07076306.1| transcription-repair coupling factor [Listeria monocytogenes FSL
N1-017]
gi|386730979|ref|YP_006204475.1| transcription-repair coupling factor [Listeria monocytogenes
07PF0776]
gi|404279764|ref|YP_006680662.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2755]
gi|404285581|ref|YP_006692167.1| transcription-repair coupling factor [Listeria monocytogenes serotype
7 str. SLCC2482]
gi|405748556|ref|YP_006672022.1| transcription-repair coupling factor [Listeria monocytogenes ATCC
19117]
gi|405751430|ref|YP_006674895.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2378]
gi|406702986|ref|YP_006753340.1| transcription-repair coupling factor [Listeria monocytogenes L312]
gi|424713078|ref|YP_007013793.1| Transcription-repair-coupling factor [Listeria monocytogenes serotype
4b str. LL195]
gi|424821943|ref|ZP_18246956.1| Transcription-repair-coupling factor [Listeria monocytogenes str.
Scott A]
gi|46879710|gb|AAT03012.1| transcription-repair coupling factor [Listeria monocytogenes serotype
4b str. F2365]
gi|225875305|emb|CAS04002.1| transcription-repair coupling factor [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|258607844|gb|EEW20452.1| transcription-repair coupling factor [Listeria monocytogenes FSL
R2-503]
gi|293584612|gb|EFF96644.1| transcription-repair coupling factor [Listeria monocytogenes HPB2262]
gi|293595111|gb|EFG02872.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J1-194]
gi|300512946|gb|EFK40034.1| transcription-repair coupling factor [Listeria monocytogenes FSL
N1-017]
gi|332310623|gb|EGJ23718.1| Transcription-repair-coupling factor [Listeria monocytogenes str.
Scott A]
gi|384389737|gb|AFH78807.1| transcription-repair coupling factor [Listeria monocytogenes
07PF0776]
gi|404217756|emb|CBY69120.1| transcription-repair coupling factor [Listeria monocytogenes ATCC
19117]
gi|404220630|emb|CBY71993.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2378]
gi|404226399|emb|CBY47804.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2755]
gi|404244510|emb|CBY02735.1| transcription-repair coupling factor [Listeria monocytogenes serotype
7 str. SLCC2482]
gi|406360016|emb|CBY66289.1| transcription-repair coupling factor [Listeria monocytogenes L312]
gi|424012262|emb|CCO62802.1| Transcription-repair-coupling factor [Listeria monocytogenes serotype
4b str. LL195]
Length = 1179
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/627 (38%), Positives = 369/627 (58%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 560 EGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 618 EEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K+G ++++VGTH
Sbjct: 677 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 856 MVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 1032
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 1033 PEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHA 1090
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++G IT +++ G++ ++ ++ F M+ + EG
Sbjct: 1091 LEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----------GVGMEGT 1140
Query: 608 QIKAELLLELPREQLLNWIFQC--LAE 632
Q+K + + + + L W++Q LAE
Sbjct: 1141 QLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|373109172|ref|ZP_09523451.1| transcription-repair coupling factor [Myroides odoratimimus CCUG
10230]
gi|423129160|ref|ZP_17116835.1| transcription-repair coupling factor [Myroides odoratimimus CCUG
12901]
gi|371645170|gb|EHO10696.1| transcription-repair coupling factor [Myroides odoratimimus CCUG
10230]
gi|371649536|gb|EHO15014.1| transcription-repair coupling factor [Myroides odoratimimus CCUG
12901]
Length = 1120
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/552 (39%), Positives = 337/552 (61%), Gaps = 17/552 (3%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR-PPYPKNPAIAEFAAQFPYEPTPDQK 95
+ AW+ K K K ++ + +L++LY R QK P + E + F YE TPDQ
Sbjct: 504 SAAWKTLKNKTKARVKHIAFNLIQLYAKRRLQKGFQCAPDSYLQHELESSFIYEDTPDQL 563
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
KA +V+ D+ E+E PMDRL+CGDVGFGKTEVA+RA F +V GKQ +L PT +LA QH
Sbjct: 564 KATQEVKADM-EQERPMDRLVCGDVGFGKTEVAIRAAFKMVDNGKQVAILVPTTILAFQH 622
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
+ +ER P ++V ++RF++ +K E L ++ G ++I++GTH L+ +V+ +LG
Sbjct: 623 YQTFTERLKDMP-VRVSYINRFRTAKQKAEILKDLEAGKIDILIGTHQLVNKGIVFKDLG 681
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL++DEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L RD S+ISTPPP R
Sbjct: 682 LLIIDEEQKFGVAVKDKLKTISENVDTLTLTATPIPRTLQFSLMAARDLSVISTPPPNRY 741
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
PI+T++ F++E + A+ YE++RGGQV+++ RI+ + E +Q+ P + I HGQ
Sbjct: 742 PIETNVVGFNEEVIRDAVSYEIERGGQVYFINNRIENIREVAGMIQRLVPDAKVGIGHGQ 801
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
++LEE M F G +L+ T I+ESGLD+ NANTI++ + FGL+ L+Q+RGRVG
Sbjct: 802 MDGKKLEELMLAFMNGEFDVLVATTIIESGLDVPNANTILINNANNFGLSDLHQMRGRVG 861
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A Y P S ++++A +R+ ALE+ +LG G +A KD+ IRG G I G +Q+
Sbjct: 862 RSNKKAFCYFICPPYSAMTEEARKRIQALEQFSDLGSGLNIAMKDLEIRGAGDILGGEQS 921
Query: 456 GDVGNVGVDLFFEML-----------FESLSKVDEHCVISVPYKSVQIDININPRLPSEY 504
G + +G + + +++ F+ L + + V K QID + P EY
Sbjct: 922 GFINEIGFETYQKIMQEAIEELKANEFKDLYEEENKEENKVFVKDTQIDTDFEILFPDEY 981
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
IN++ + + NE +++ L Q+ + L ++G P LL L ++ AA++G
Sbjct: 982 INNITERLNLYNELSLITNEEV--LQQYEQRLIDRFGALPRQAIALLNSLRIKWHAANMG 1039
Query: 565 ITKIY-ASGKMV 575
I KI GKM+
Sbjct: 1040 IEKIVMKQGKMI 1051
>gi|404282645|ref|YP_006683542.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2372]
gi|404232147|emb|CBY53550.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2372]
Length = 1179
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/627 (38%), Positives = 369/627 (58%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 560 EGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 618 EEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K+G ++++VGTH
Sbjct: 677 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 856 MVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 1032
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 1033 PEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVRA 1090
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++G IT +++ G++ ++ ++ F M+ + EG
Sbjct: 1091 LEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----------GVGMEGT 1140
Query: 608 QIKAELLLELPREQLLNWIFQC--LAE 632
Q+K + + + + L W++Q LAE
Sbjct: 1141 QLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|254829305|ref|ZP_05233992.1| transcription-repair coupling factor [Listeria monocytogenes FSL
N3-165]
gi|258601718|gb|EEW15043.1| transcription-repair coupling factor [Listeria monocytogenes FSL
N3-165]
Length = 1179
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/627 (38%), Positives = 369/627 (58%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 560 EGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 618 EEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K+G ++++VGTH
Sbjct: 677 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 856 MVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 1032
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 1033 PEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHA 1090
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++G IT +++ G++ ++ ++ F M+ + EG
Sbjct: 1091 LEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----------GVGMEGT 1140
Query: 608 QIKAELLLELPREQLLNWIFQC--LAE 632
Q+K + + + + L W++Q LAE
Sbjct: 1141 QLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|392375575|ref|YP_003207408.1| transcription-repair-coupling factor (TRCF) (ATP-dependent helicase
mfd) [Candidatus Methylomirabilis oxyfera]
gi|258593268|emb|CBE69607.1| Transcription-repair-coupling factor (TRCF) (ATP-dependent helicase
mfd) [Candidatus Methylomirabilis oxyfera]
Length = 1152
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 237/550 (43%), Positives = 330/550 (60%), Gaps = 10/550 (1%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR--LKQKRPPYPKNPAIAEFAAQ 85
P TL +L + +W + K + K ++++M +L+ LY R +K P P P EF A
Sbjct: 534 PPTLDRLG-SASWAKAKERVKASVREMAQELLALYASRQVIKGHALP-PDTPWQREFEAG 591
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
FPYE TPDQ +A DV+ D+ ER+ PMDRLICGDVG+GKTEVA+RA F + GKQ VL
Sbjct: 592 FPYEETPDQLQAIADVKADM-ERDRPMDRLICGDVGYGKTEVAMRAAFKTIIGGKQVAVL 650
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT VLA QHF SERF +P KV +LSRF+S+ E+ E L + G ++I++GTH LL
Sbjct: 651 VPTTVLALQHFQTFSERFGGFP-AKVEMLSRFRSRKEQSEVLRGVGEGVVDIVIGTHRLL 709
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
V + +LGLLVVDEE RFGV KE++ + VDVLTL+ATPIPRTL++++ G RD S
Sbjct: 710 QKDVRFRDLGLLVVDEEHRFGVAAKERMKQLRRQVDVLTLTATPIPRTLHMSMLGVRDIS 769
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
I T P RL IKT ++ F + AI++ELDRGGQVF+V R++ ++ ++Q P
Sbjct: 770 TIETAPDNRLSIKTTVARFDPALIKEAIEHELDRGGQVFFVHNRVESIQGVARLIKQLVP 829
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
+A+AHG+ +LE M F G +L+CT I+ESGLD+ ANTII+ GLA
Sbjct: 830 EARLAVAHGELPEERLERIMCDFYDGTFNVLLCTTIIESGLDVSAANTIIIDRADALGLA 889
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
QLYQLRGRVGR A+AYL P + LS+ A +RL + E ELG GF++A +D+ IRG
Sbjct: 890 QLYQLRGRVGRDKHRAYAYLLVPKDAALSETAKKRLQVIAELTELGSGFKVAARDLEIRG 949
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYI 505
G + G +Q G + VG+DL+ L ES K + ++ P + V I + LP YI
Sbjct: 950 TGNLLGPEQHGQIAAVGIDLYCR-LIESTVKELKGQAVAEPVEPV-IRLEAEGYLPEIYI 1007
Query: 506 NHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
+++ AA + + E L ++G+ P E LL + +R +A + I
Sbjct: 1008 EDSNVRLQLYKRL--AAFSGLSEVSALREELVDRFGEPPPETERLLTAMALRILARTLHI 1065
Query: 566 TKIYASGKMV 575
+ GK +
Sbjct: 1066 REAVVVGKTI 1075
>gi|163848640|ref|YP_001636684.1| transcription-repair coupling factor [Chloroflexus aurantiacus
J-10-fl]
gi|222526576|ref|YP_002571047.1| transcription-repair coupling factor [Chloroflexus sp. Y-400-fl]
gi|163669929|gb|ABY36295.1| transcription-repair coupling factor [Chloroflexus aurantiacus
J-10-fl]
gi|222450455|gb|ACM54721.1| transcription-repair coupling factor [Chloroflexus sp. Y-400-fl]
Length = 1185
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 237/576 (41%), Positives = 339/576 (58%), Gaps = 34/576 (5%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQF 86
P TL++L T WER K K + A+Q + +L+ LY R LK P N E A F
Sbjct: 553 PPTLTRLG-TQDWERTKRKVRAAVQDLAEELLRLYAQRQLKSGYAFSPDNEWQRELEASF 611
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
PY T DQ +A +V+ D+ E+ TPMDRL+CGDVGFGKTEVALRA F V GKQ +L
Sbjct: 612 PYLETDDQLRAIAEVKADM-EKPTPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAILV 670
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT VLA+QHFD +R + +P + V +LSRF+S E++ + + G ++II+GTH LL
Sbjct: 671 PTTVLAQQHFDTFRKRMAAFP-VTVEMLSRFRSPKEQDAIIRDLARGKIDIIIGTHRLLS 729
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
+ VV+ NLGL+++DEEQRFGV+ KE++ + VDVLTL+ATPIPRTL++AL G RD S+
Sbjct: 730 NDVVFRNLGLVIIDEEQRFGVRHKERLKLMRTEVDVLTLTATPIPRTLHMALAGIRDLSV 789
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I TPP +R+PIKT++ + I+ EL+R GQV+ V R++ + + L++ P
Sbjct: 790 IDTPPEDRIPIKTYVVPTDDHLIQEVIRRELEREGQVYVVHNRVQSIYHVAERLRRLVPE 849
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
IA+ HGQ R+LE+ M F +G +L+CT I+ESGLD+ NANTII+ D +GLAQ
Sbjct: 850 ARIAVGHGQLAERELEQVMIDFFEGRYDVLVCTTIIESGLDVPNANTIIIDDATNYGLAQ 909
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
LYQLRGRVGR A+AYL Y ++++ A RL A++E ELG GF++A +D+ IRG
Sbjct: 910 LYQLRGRVGRGATRAYAYLLYNAARVMTNDARLRLEAIQEATELGAGFRIAMRDLEIRGA 969
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKV------------DEHCVISVPYKS----- 489
G + G +Q+G + VG DL+ +L +++ K+ D +V +S
Sbjct: 970 GNLLGAEQSGHIAAVGFDLYSRLLEQAVRKLKQDVDELAETATDSSVTPAVMAESLRAPN 1029
Query: 490 ----------VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQD-IWCLMQFTESLRR 538
V ID+ + LP +YI+ + + A D + L Q E + R
Sbjct: 1030 VSERVLVAPLVTIDLPLTAYLPPDYISDETVRLAVYQRMVDATTLDEVRGLRQ--ELIDR 1087
Query: 539 QYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM 574
G P + L+ L +R +A G+ I G +
Sbjct: 1088 FGGPLPEPVLHLILWLQIRLLALQAGVASITTEGDV 1123
>gi|346311312|ref|ZP_08853319.1| hypothetical protein HMPREF9452_01188 [Collinsella tanakaei YIT
12063]
gi|345901142|gb|EGX70950.1| hypothetical protein HMPREF9452_01188 [Collinsella tanakaei YIT
12063]
Length = 1209
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/560 (40%), Positives = 351/560 (62%), Gaps = 8/560 (1%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQF 86
PR L++L +T W R K + + +K+ DL++LY R + P P E F
Sbjct: 592 PR-LTRL-NTADWTRATNKARKSAKKLAFDLVDLYTRRSSITGYSFGPDTPDQIEMEESF 649
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
PYEPT DQ A D++ D+ E PMDRL+CGDVGFGKTEVALRA F V G+Q MVL
Sbjct: 650 PYEPTHDQLDAIADIKGDM-ESSKPMDRLLCGDVGFGKTEVALRAAFKCVDGGRQVMVLC 708
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA+QH++ ERF+ + ++V +LSRF++ A++ L G ++++VGTH LL
Sbjct: 709 PTTILAQQHYETFFERFAPF-GVEVEVLSRFRTAAQQRRALAAFAEGKVDVLVGTHRLLS 767
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
+ V NNLGL+++DEEQRFGV+ KE++ + + +DVLTLSATPIPRT+ +A++G RD SL
Sbjct: 768 ADVNPNNLGLVIIDEEQRFGVQHKEQLKNLREQIDVLTLSATPIPRTMQMAISGVRDMSL 827
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPP R P+ H+ + + V +AI+ ELDRGGQV+YV R+K +++ ++ + + P
Sbjct: 828 ITTPPTGRRPVIVHVGEYDPDVVSAAIRLELDRGGQVYYVSNRVKTIDDAVERVHEVVPE 887
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+ +AHG+ R++E+ M +FA G I +L+ T I+ESG+D ++NT+I++D Q+ GLAQ
Sbjct: 888 ARVGVAHGKMSPREVEDVMVQFATGKIDVLVATTIIESGIDNPHSNTLIIEDSQRLGLAQ 947
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
LYQL+GRVGR+ +A+AY +P + L+++A ERL AL E ++LG G ++A +D+ IRG
Sbjct: 948 LYQLKGRVGRSATQAYAYFMFPGELPLTEEATERLMALSEFQDLGSGMRIAMRDLEIRGA 1007
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
G++ G +Q G++ +VG DLF +ML +++++ V V I++ + L EY+
Sbjct: 1008 GSLVGAEQHGNLSSVGFDLFTQMLGQAVAEARGESGADVEESGVTINLPADFFLSEEYLP 1067
Query: 507 HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGIT 566
++ + + AA D+ + E +G+ P + L + +R A +G+
Sbjct: 1068 AVDQRVLVYRRL--AAADDLASVDAVQEDCENSHGELPRAAANLFDRARIRIRAERLGLE 1125
Query: 567 KI-YASGKMVGMKTNMNKKV 585
I G++V ++ K V
Sbjct: 1126 SISLTQGRLVFQGVDVPKNV 1145
>gi|423132820|ref|ZP_17120467.1| transcription-repair coupling factor [Myroides odoratimimus CIP
101113]
gi|371649577|gb|EHO15054.1| transcription-repair coupling factor [Myroides odoratimimus CIP
101113]
Length = 1120
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/552 (39%), Positives = 337/552 (61%), Gaps = 17/552 (3%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR-PPYPKNPAIAEFAAQFPYEPTPDQK 95
+ AW+ K K K ++ + +L++LY R QK P + E + F YE TPDQ
Sbjct: 504 SAAWKTLKNKTKARVKHIAFNLIQLYAKRRLQKGFQCAPDSYLQHELESSFIYEDTPDQL 563
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
KA +V+ D+ E+E PMDRL+CGDVGFGKTEVA+RA F +V GKQ +L PT +LA QH
Sbjct: 564 KATQEVKADM-EQERPMDRLVCGDVGFGKTEVAIRAAFKMVDNGKQVAILVPTTILAFQH 622
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
+ +ER P ++V ++RF++ +K E L ++ G ++I++GTH L+ +V+ +LG
Sbjct: 623 YQTFTERLKDMP-VRVSYINRFRTAKQKAEILKELEAGKIDILIGTHQLVNKGIVFKDLG 681
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL++DEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L RD S+ISTPPP R
Sbjct: 682 LLIIDEEQKFGVAVKDKLKTISENVDTLTLTATPIPRTLQFSLMAARDLSVISTPPPNRY 741
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
PI+T++ F++E + A+ YE++RGGQV+++ RI+ + E +Q+ P + I HGQ
Sbjct: 742 PIETNVVGFNEEVIRDAVSYEIERGGQVYFINNRIENIREVAGMIQRLVPDAKVGIGHGQ 801
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
++LEE M F G +L+ T I+ESGLD+ NANTI++ + FGL+ L+Q+RGRVG
Sbjct: 802 MDGKKLEELMLAFMNGEFDVLVATTIIESGLDVPNANTILINNANNFGLSDLHQMRGRVG 861
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A Y P S ++++A +R+ ALE+ +LG G +A KD+ IRG G I G +Q+
Sbjct: 862 RSNKKAFCYFICPPYSAMTEEARKRIQALEQFSDLGSGLNIAMKDLEIRGAGDILGGEQS 921
Query: 456 GDVGNVGVDLFFEML-----------FESLSKVDEHCVISVPYKSVQIDININPRLPSEY 504
G + +G + + +++ F+ L + + V K QID + P EY
Sbjct: 922 GFINEIGFETYQKIMQEAIEELKANEFKDLYEEENKEENKVFVKDTQIDTDFEILFPDEY 981
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
IN++ + + NE +++ L Q+ + L ++G P LL L ++ AA++G
Sbjct: 982 INNITERLNLYNELSLITNEEV--LQQYEQRLIDRFGALPRQAIALLNSLRIKWHAANMG 1039
Query: 565 ITKIY-ASGKMV 575
I KI GKM+
Sbjct: 1040 IEKIVMKQGKMI 1051
>gi|347751665|ref|YP_004859230.1| transcription-repair coupling factor [Bacillus coagulans 36D1]
gi|347584183|gb|AEP00450.1| transcription-repair coupling factor [Bacillus coagulans 36D1]
Length = 1179
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 228/611 (37%), Positives = 371/611 (60%), Gaps = 12/611 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + +IQ + DL++LY R K + P E
Sbjct: 556 SEGKEPK-LYKLG-GSEWKRVKRKVQSSIQDIADDLVKLYAEREASKGFAFSPDGDMQRE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ ++ +++RD+ E+E PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 614 FEAAFPYKETEDQLRSIQEIKRDM-EKEKPMDRLLCGDVGYGKTEVAIRAAFKAMMDGKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QHF+ V+ERF YP IKVGLLSRF+++ E+ E + +++G +++++GT
Sbjct: 673 VAMLVPTTILAQQHFETVTERFHGYP-IKVGLLSRFRTRKEQNETIKGLRNGTIDMVIGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL + +++LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRLLSKDIQFHDLGLLIIDEEQRFGVSHKEKIKKLKTNVDVLTLTATPIPRTLHMSMVGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ + V AI+ EL R GQV+++ RI+ +E + +
Sbjct: 792 RDLSVIETPPENRFPVQTYVLEYNDQMVREAIERELARDGQVYFLYNRIEDIERKAEEIA 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P +A AHG+ QLE + F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 852 RLVPDARVAYAHGRMTESQLESVIFGFLEGEYDVLVTTTIIETGVDIPNVNTLIVNDADR 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ + +RL A++E ELG GF++A +D+
Sbjct: 912 MGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLAEASEKRLQAIKEFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ ++++ I+ +P
Sbjct: 972 SIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEARKGADGEEEKLPPFEVELEIDAYIP 1031
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI +EM + + + + + ++G P + L ++ A
Sbjct: 1032 DAYIKDGYQKIEMYKRFRGI--ETLEDIEELKVEMIDRFGDYPQQVSDLFTIAEMKVYAK 1089
Query: 562 DIGITKIYASGKMVG--MKTNMNKKVFKMMIDSMTSEVHRNS-LTFEGDQIKAELLLELP 618
+ ++ I + +++ M +K+V + + + R++ EG+Q+K + L++
Sbjct: 1090 EAMLSSIKQNKQLITILMSEKGSKQVNGPKVVDIVRQYGRSAGFGMEGNQLK--ITLDIK 1147
Query: 619 REQLLNWIFQC 629
+ + W++ C
Sbjct: 1148 KSKGHEWLYTC 1158
>gi|168183619|ref|ZP_02618283.1| transcription-repair coupling factor [Clostridium botulinum Bf]
gi|237797000|ref|YP_002864552.1| transcription-repair coupling factor [Clostridium botulinum Ba4 str.
657]
gi|182673263|gb|EDT85224.1| transcription-repair coupling factor [Clostridium botulinum Bf]
gi|229263299|gb|ACQ54332.1| transcription-repair coupling factor [Clostridium botulinum Ba4 str.
657]
Length = 1168
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/584 (38%), Positives = 361/584 (61%), Gaps = 21/584 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K+P+ ++KL ++ W + K K K +I+++ DL++LY R K Y + +
Sbjct: 559 SEGKKPK-VNKLG-SSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGYKYSDDTVWQKQ 616
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F +FPYE TPDQ A D++RD+ E PMDRL+CGDVG+GKTEVA+RA F V GKQ
Sbjct: 617 FEEEFPYEETPDQLLAIEDIKRDM-ESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQ 675
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ +RFS +P I V ++SRF++ +E++ + IK G+++I++GT
Sbjct: 676 VAFLVPTTILAQQHYNNFKQRFSDFP-ITVDVISRFRTLSEQKATIKSIKEGNVDILIGT 734
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + + +LGLL++DEEQRFGVK KEK+ + K +VDVLTLSATPIPRTL+++L G
Sbjct: 735 HRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGV 794
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP ER P++T++ ++ + + +I E+ RGGQ+++V R++ + E ++
Sbjct: 795 RDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVYNRVESIHEMASYIS 854
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P + IAHGQ ++LE + F + ILI T I+E+G+DI+N NT+I+ D +
Sbjct: 855 KLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADK 914
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A+++ ELG GF++A KD+
Sbjct: 915 MGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALKDL 974
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDININ 497
IRG G + G Q G + ++G DL+ ML +++ +D+ V +++ I+
Sbjct: 975 EIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPV------ETSVELKID 1028
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+P+ YI +E+ + ++ + M E L ++ P S+ L+ Y+R
Sbjct: 1029 AYIPNTYIKDETQKIEVYKKIASIDSKEEF--MDVEEELEDRFSDIPISVYNLMNISYIR 1086
Query: 558 RMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV 597
+ + I +I V K+++ +K+ K+++D + EV
Sbjct: 1087 SLGKKLDIEEIKEISNEVVFQFEDKSSLKEKIVKLIMDKYSKEV 1130
>gi|217965700|ref|YP_002351378.1| transcription-repair coupling factor [Listeria monocytogenes HCC23]
gi|386006943|ref|YP_005925221.1| transcription-repair coupling factor [Listeria monocytogenes L99]
gi|386025523|ref|YP_005946299.1| transcription-repair coupling factor [Listeria monocytogenes M7]
gi|217334970|gb|ACK40764.1| transcription-repair coupling factor [Listeria monocytogenes HCC23]
gi|307569753|emb|CAR82932.1| transcription-repair coupling factor [Listeria monocytogenes L99]
gi|336022104|gb|AEH91241.1| transcription-repair coupling factor (superfamily II helicase)
[Listeria monocytogenes M7]
Length = 1179
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/627 (38%), Positives = 369/627 (58%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 560 EGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 618 EEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K+G ++++VGTH
Sbjct: 677 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 856 MVPDARVATAHGQMGESELEAVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 1032
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 1033 PEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHA 1090
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++G IT +++ G++ ++ ++ F M+ + EG
Sbjct: 1091 LEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----------GVGMEGT 1140
Query: 608 QIKAELLLELPREQLLNWIFQC--LAE 632
Q+K + + + + L W++Q LAE
Sbjct: 1141 QLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|4090863|gb|AAC98900.1| transcription-repair coupling factor [Listeria monocytogenes]
Length = 1190
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/627 (38%), Positives = 369/627 (58%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 571 EGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 628
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 629 EEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 687
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K+G ++++VGTH
Sbjct: 688 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTH 746
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 747 RLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 806
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 807 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 866
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 867 MVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 926
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 927 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 986
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 987 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 1043
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 1044 PEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHA 1101
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++G IT +++ G++ ++ ++ F M+ + EG
Sbjct: 1102 LEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----------GVGMEGT 1151
Query: 608 QIKAELLLELPREQLLNWIFQC--LAE 632
Q+K + + + + L W++Q LAE
Sbjct: 1152 QLK--ITINVQNKPLKEWLYQVKSLAE 1176
>gi|118578938|ref|YP_900188.1| transcription-repair coupling factor [Pelobacter propionicus DSM
2379]
gi|118501648|gb|ABK98130.1| transcription-repair coupling factor [Pelobacter propionicus DSM
2379]
Length = 1177
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 227/544 (41%), Positives = 339/544 (62%), Gaps = 19/544 (3%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPY 88
+L KL + WE+ K K + AI+++ +L+E+Y R + + P + EF A F +
Sbjct: 571 SLDKLGGVS-WEKSKGKARKAIEELAGELLEIYAKRQICEGFSFSPPDEMYREFEASFAW 629
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
E TPDQ A DV D+ + PMDRL+CGDVG+GKTEVALR F GKQ VL PT
Sbjct: 630 EETPDQLSAINDVLADM-QHSRPMDRLVCGDVGYGKTEVALRGAFKAALDGKQVGVLVPT 688
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
+LA+QHF+ ER +YP ++V LSRF++ E++ L+ +K G ++I++GTH LL
Sbjct: 689 TILAQQHFETFHERLKEYP-VRVEALSRFRTPKEQKAILERLKKGEIDIVIGTHRLLQKD 747
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
V + +LGLL++DEEQRFGVK KE++ +F+ VDV+TL+ATPIPRTLY+++ G RD S+I
Sbjct: 748 VAFKDLGLLIIDEEQRFGVKDKERLKAFRAVVDVMTLTATPIPRTLYMSMMGIRDLSIID 807
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
TPP +RL +KT ++ FS+E V AI EL RGGQVF+V R++ + + + + P
Sbjct: 808 TPPVDRLAVKTIVARFSEELVREAIMRELRRGGQVFFVHNRVQTIAKRAELIAALVPEAK 867
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
IA+ HGQ ++LE+ M F G +LICT I+ESGLDI NANT+IV +FGL+QLY
Sbjct: 868 IAVGHGQMGEQELEKVMLGFMHGETNLLICTTIIESGLDIPNANTLIVDHADRFGLSQLY 927
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
QLRGRVGR+ + +AYL P + L+ A ERL L++ ELG GF++A DM IRG G
Sbjct: 928 QLRGRVGRSSQRGYAYLLIPGEGSLTSDARERLKILQDISELGAGFRIATHDMEIRGAGD 987
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHL 508
+ G +Q+G V +G +L+ +ML E++ ++ +I +I++ + +P Y+
Sbjct: 988 MLGSRQSGTVIEIGFELYNQMLEETICRMRGEEMIE--QVEPEINLKVPAFIPETYVRDT 1045
Query: 509 ENPMEMVNEAEKA-AEQDIWCLMQFTESLRRQYGKEPYS---------MEILLKKLYVRR 558
+ + + +A +E+D+ + + ++GK P + + I+LKKL VR+
Sbjct: 1046 GQRLVIYKKLTQAESEEDV---LDVQNEVSDRFGKYPLATAYLFETMKLRIMLKKLLVRQ 1102
Query: 559 MAAD 562
+ D
Sbjct: 1103 IDYD 1106
>gi|332981377|ref|YP_004462818.1| transcription-repair coupling factor [Mahella australiensis 50-1 BON]
gi|332699055|gb|AEE95996.1| transcription-repair coupling factor [Mahella australiensis 50-1 BON]
Length = 1159
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 225/548 (41%), Positives = 344/548 (62%), Gaps = 13/548 (2%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQF 86
PR LSKL + W + K K + +++KM +L++LY R K + P A+ F
Sbjct: 552 PR-LSKLG-GSEWSKTKAKVRESVRKMAGELLKLYASRYTTKGHAFSPDTVWQAQLEESF 609
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
PY+ TPDQ +A +++ D+ E + PMDRL+CGDVG+GKTEVALRA F V GKQ VL
Sbjct: 610 PYQETPDQLQAIEEIKADM-ESDKPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVLV 668
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT VLA+QH++ + R + +P IKV ++SRF+S E+++ + +K G ++II+GTH+LL
Sbjct: 669 PTTVLAQQHYNTFTNRLAGFP-IKVDVISRFRSVQEQKDIVKGLKSGDIDIIIGTHALLS 727
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
S V +++LGLL+VDEEQRFGV KE I FK +VDVLTL+ATPIPRTL+++L+G RD S+
Sbjct: 728 SNVKFHDLGLLIVDEEQRFGVSHKEAIKRFKNNVDVLTLTATPIPRTLHMSLSGIRDISI 787
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I TPP +R P++T++ + + + AI EL RGGQV++V RI ++ L + P
Sbjct: 788 IETPPEDRYPVQTYVVEYDENIIRDAILKELGRGGQVYFVYNRINSIDVMAIHLHELVPE 847
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
IA+AHG+ +LE M F G +L+CT I+E+GLDI N NT+IV D FGLAQ
Sbjct: 848 ARIAVAHGRMGDDKLERVMMDFMDGYYDVLLCTTIIETGLDIPNVNTLIVYDADHFGLAQ 907
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
LYQLRGRVGR+++ A+AY Y +L+++A +RL A+ E E G GF++A +D+ IRG
Sbjct: 908 LYQLRGRVGRSNRLAYAYFTYKKDRVLTEEAEKRLHAITEFTEFGSGFKIALRDLEIRGA 967
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININPRLPSEY 504
G + G +Q G + VG D++ ++L E+++++ P + + I+I ++ +P +Y
Sbjct: 968 GNLLGAEQHGHMAAVGYDMYCKLLEEAIAQLKGET----PEEEIDTSIEIKLDAYIPDDY 1023
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
+ +E+ ++ + ++ R +G P S+ LL ++++ ++ IG
Sbjct: 1024 VPSEAQRIEIYKRIMSISDIEEEYDVEEEIEDR--FGDIPQSVRNLLSIMHIKLLSKKIG 1081
Query: 565 ITKIYASG 572
I I G
Sbjct: 1082 IVSIEQKG 1089
>gi|290894278|ref|ZP_06557245.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J2-071]
gi|404406667|ref|YP_006689382.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2376]
gi|290556162|gb|EFD89709.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J2-071]
gi|404240816|emb|CBY62216.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2376]
Length = 1179
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/627 (38%), Positives = 369/627 (58%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 560 EGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 618 EEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K+G ++++VGTH
Sbjct: 677 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 856 MVPDARVATAHGQMGESELEAVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 1032
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 1033 PEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHA 1090
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++G IT +++ G++ ++ ++ F M+ + EG
Sbjct: 1091 LEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----------GVGMEGT 1140
Query: 608 QIKAELLLELPREQLLNWIFQC--LAE 632
Q+K + + + + L W++Q LAE
Sbjct: 1141 QLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|392404549|ref|YP_006441161.1| transcription-repair coupling factor [Turneriella parva DSM 21527]
gi|390612503|gb|AFM13655.1| transcription-repair coupling factor [Turneriella parva DSM 21527]
Length = 1124
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 239/622 (38%), Positives = 368/622 (59%), Gaps = 11/622 (1%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFA 83
T+ PR L L ++W + + + K + + +L+ELY HR+ QK +P + + +F
Sbjct: 507 TENPR-LDHLGKKSSWAKTRARVKRLVDSIAEELLELYAHRVNQKGFAFPPDSSFQHDFE 565
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A FP+ T Q + ++ D+ E E PMDRL+CGDVGFGKTEVA+RA F AGKQ
Sbjct: 566 AAFPFTETEHQLETIYAIKADM-ESEKPMDRLVCGDVGFGKTEVAIRAAFKAAMAGKQVA 624
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
VL PT +LA QH+ S+RF+ YP +++ +SRF+S +E E + G ++II+GTH+
Sbjct: 625 VLCPTTILAFQHYRSFSKRFADYP-VRIDYISRFRSPSEVAEIKARLADGKIDIIIGTHA 683
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
L V Y +LGL+++DEEQRFGV KEK+ + ++D L L+ATPIPRTL+++L+G RD
Sbjct: 684 LFADDVRYKSLGLMIIDEEQRFGVTHKEKLRQMRTNLDCLALTATPIPRTLHMSLSGIRD 743
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I TPP +R I+TH+ A ++E + A K+EL+RGGQV+ + ++K +EE L+
Sbjct: 744 LSIIETPPADRRKIETHVIAENEELLRLAFKHELERGGQVYVLHNKVKTIEEQAIRLRAL 803
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P IA+ HGQ +EE M F Q A IL+ T I+ESG+DI N NT+IV +FG
Sbjct: 804 APQARIAVLHGQMPETAIEEVMVDFYQHAYDILVSTTIIESGIDIPNCNTLIVLGAHEFG 863
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSL--LSDQALERLAALEECRELGQGFQLAEKDM 441
L+QLYQL+GRVGR+D++A+AY FYP ++ LS A RL L E +LG GF++A KD+
Sbjct: 864 LSQLYQLKGRVGRSDRQAYAYFFYPSPTMHTLSGDAERRLEVLAEYDDLGSGFRIAMKDL 923
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G++Q+G++ +G +L+ +ML + ++++ V + + S I + + P
Sbjct: 924 EIRGAGNLLGKEQSGEIMEIGFELYSQMLNDKVNELKGKAVANDDFTSA-IMLPCDWYFP 982
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
EYI ME AA D + + E+L +YGK P ++E++L +R++A
Sbjct: 983 DEYIADTRAKMEFYKSLSAAAGLDEF--HEIREALVDRYGKPPETVELMLLLEEIRQLAY 1040
Query: 562 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQ 621
+ + ++ S K +KT F + D ++L ++K L P+
Sbjct: 1041 MLRLERVAISPKTDDLKTPSEMPYFIVAPDHRLDMAKVSALLTRDKRVK--LDTADPKRI 1098
Query: 622 LLNWIFQCLAELYASLPALIKY 643
L+ Q + L A++KY
Sbjct: 1099 NLDIPQQPQLAFFRELSAILKY 1120
>gi|336394542|ref|ZP_08575941.1| transcription-repair coupling factor [Lactobacillus farciminis KCTC
3681]
Length = 1174
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/492 (42%), Positives = 327/492 (66%), Gaps = 7/492 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K P+ ++KL W++ K K + I+ + DL++LY R +K +PK+ ++ +F
Sbjct: 554 EGKSPK-INKLG-GNEWQKTKRKVQSNIEDIADDLIDLYAKREAEKGFAFPKDDSMQHDF 611
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY TPDQ ++ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F V AGKQ
Sbjct: 612 DNAFPYPETPDQLRSIDEIKRDM-EKPHPMDRLLVGDVGFGKTEVALRAAFKAVEAGKQV 670
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
+ LAPT +L +QH++ + ERF +P + +G+LSRFQ++ + +E ++ + G L+I+VGTH
Sbjct: 671 VFLAPTTLLVQQHYETMKERFEGFP-VNIGILSRFQTRKQSKETIEQLADGQLDIVVGTH 729
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V ++++GLL++DEEQRFGVK KEKI K +VDVLTL+ATPIPRTL +++ G R
Sbjct: 730 RLLSKDVKFSDIGLLIIDEEQRFGVKHKEKIKQLKANVDVLTLTATPIPRTLNMSMLGVR 789
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D SLI T P R P++T++ + E + AIK E+ RGGQVFY+ R++ +++ + LQ
Sbjct: 790 DLSLIETAPSNRYPVQTYVMEQNYEVIAGAIKREMARGGQVFYLHNRVEDMDQVAEQLQA 849
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P IA AHG+ Q+E + + G +L+ T I+E+G+D+ N NT+IV++ ++
Sbjct: 850 LVPDARIATAHGRMNETQMEGVIADYLNGEYDVLVTTTIIETGVDMPNTNTLIVENADRY 909
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQ+RGRVGR+ + A+AYL Y +L++ +RL A++ ELG GF++A +D+
Sbjct: 910 GLSQLYQIRGRVGRSSRVAYAYLMYRPNKVLTEVGEQRLEAIKNFTELGSGFKIAMRDLS 969
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G + G+QQ G + +VG DL+ +ML ++++K H + ++++++ LP+
Sbjct: 970 IRGAGNLLGKQQHGFIDSVGFDLYTQMLNDAVAKKRGHT--KAEKTNSEVNLSLEAYLPN 1027
Query: 503 EYINHLENPMEM 514
+YI+ +E+
Sbjct: 1028 DYISDQRQKVEL 1039
>gi|146296229|ref|YP_001180000.1| transcription-repair coupling factor [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409805|gb|ABP66809.1| transcription-repair coupling factor [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 1143
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 229/542 (42%), Positives = 348/542 (64%), Gaps = 13/542 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYE 89
LSKL T W+++K K + +++ + D++ELY R LK+ P EF +FPY
Sbjct: 547 LSKLG-TLEWQKQKQKVRKSLEVVAKDIVELYAKRQLKKGFKFSPDTIWQKEFEEKFPYT 605
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
T Q +A ++++D+ E E PMDR++CGDVG+GKTEVA+RA F V KQ VL PT
Sbjct: 606 ETEGQLQAIEEIKKDM-ESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTT 664
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH+ +R +P I + +LSR +S++++++ L +K G ++II+GTH LL + V
Sbjct: 665 ILAQQHYMTFVQRMKDFP-ITIEVLSRLKSESQQKKILKALKDGTIDIIIGTHRLLSNDV 723
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL++DEE +FGV+ KEKI K +VDVLTL+ATPIPRTL +AL G RD S+I
Sbjct: 724 KFKDLGLLIIDEEHKFGVEHKEKIKKLKENVDVLTLTATPIPRTLNMALLGIRDLSIIED 783
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP +R P++T + ++++ + AI E+ RGGQVFY+ R+K +EE ++ LQ A G DI
Sbjct: 784 PPEDRFPVQTFVMEYNEKVIKEAILKEVSRGGQVFYLYNRVKDIEEVVNRLQ-ALLGEDI 842
Query: 330 AIA--HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 387
IA HGQ RQLEE + F G +L+CT I+ESG+D+ N NT+IV+D + GLAQL
Sbjct: 843 KIAYAHGQMDERQLEEVLIDFINGKYDVLVCTTIIESGVDMPNVNTLIVEDADRLGLAQL 902
Query: 388 YQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFG 447
YQLRGRVGR++K A+AY + +LS++A +RL+A++E ELG GF++A +D+ IRG G
Sbjct: 903 YQLRGRVGRSNKLAYAYFTFRKDKVLSEEAAKRLSAIKEFTELGSGFKIAMRDLEIRGAG 962
Query: 448 TIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINH 507
+I G+ Q G + VG D++ +L E + ++ + P QIDI +N + SEYI+
Sbjct: 963 SIVGKLQHGHINAVGYDMYIRLLSEEIRRLKGEEI--QPEIEPQIDIRVNAYISSEYID- 1019
Query: 508 LENPMEMVNEAEKAAEQDI-WCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGIT 566
+ E +N +K + D + + + L ++G P ++ L+K Y++ + +GI
Sbjct: 1020 --DDKERINMYKKISSIDTKEDVQEIYDELIDRFGDIPKEVDNLIKIAYIKFLCKRLGIL 1077
Query: 567 KI 568
I
Sbjct: 1078 SI 1079
>gi|347536875|ref|YP_004844300.1| transcription-repair coupling factor [Flavobacterium branchiophilum
FL-15]
gi|345530033|emb|CCB70063.1| Transcription-repair coupling factor [Flavobacterium branchiophilum
FL-15]
Length = 1116
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/560 (39%), Positives = 336/560 (60%), Gaps = 17/560 (3%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYL-HRLKQKRPPYPKNPAIAEFAAQF 86
P + KL + AW+ K K K ++ + +L++LY RL + P + AE + F
Sbjct: 498 PPKIYKLG-SNAWKLLKQKTKARVKHIAFNLIQLYAKRRLDKGFQCAPDSYLQAELESSF 556
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
YE TPDQ K+ +++ D+ E ++PMDRL+CGDVGFGKTEVA+RA F V KQ VL
Sbjct: 557 IYEDTPDQLKSTQEIKADM-ESDSPMDRLVCGDVGFGKTEVAIRAAFKAVDNSKQVAVLV 615
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA QH+ SER P + VG L+RF++ +K E L + G L+I++GTH L+
Sbjct: 616 PTTILAYQHYRTFSERLKDMP-VSVGYLNRFRTAKQKAETLKQLAEGKLDIVIGTHQLVN 674
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
VV+ +LGLL+VDEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L RD S+
Sbjct: 675 KNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIPRTLQFSLMAARDLSV 734
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
ISTPPP R PI++ + FS+E + AI +E+ R GQV+++ RI+ ++E +Q+ P
Sbjct: 735 ISTPPPNRYPIESQVVGFSEETIRDAISFEIQRNGQVYFINNRIENIKEVAGMIQRLVPD 794
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+ I HGQ +LEE M F G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 795 AKVGIGHGQMDGSKLEELMLAFMNGDFDVLVATTIIESGLDVPNANTIFINNAHHFGLSD 854
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+Q+RGRVGR++K+A Y P S ++D+A +R+ ALE+ ELG GF +A KD+ IRG
Sbjct: 855 LHQMRGRVGRSNKKAFCYFICPPYSAMTDEARKRIQALEQFSELGSGFNIAMKDLEIRGA 914
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS----------VPYKSVQIDINI 496
G + G +Q+G + +G D + +++ E++ ++ E+ V K + +D +
Sbjct: 915 GDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYENEDKPEKVYVKDLHLDTDF 974
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
P +YIN++ + + NE + +D L + + L ++G P LL + +
Sbjct: 975 ELLFPDDYINNISERLNLYNEL--SLIKDDLTLENYQQKLIDRFGPLPKQAVSLLNSIKI 1032
Query: 557 RRMAADIGITK-IYASGKMV 575
+ +A +GI K + GKM+
Sbjct: 1033 KWIATQLGIEKLVMKQGKMI 1052
>gi|342733110|ref|YP_004771949.1| transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384456478|ref|YP_005669076.1| transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417968852|ref|ZP_12609829.1| Transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-co]
gi|418015484|ref|ZP_12655049.1| transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418373369|ref|ZP_12965458.1| Transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330565|dbj|BAK57207.1| transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345505819|gb|EGX28113.1| transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984824|dbj|BAK80500.1| transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380338857|gb|EIA27696.1| Transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-co]
gi|380341205|gb|EIA29698.1| Transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 1169
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 229/554 (41%), Positives = 350/554 (63%), Gaps = 11/554 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEF 82
E K P+ ++KL + W + KTK + +I ++ +L++LY R K Y K+ ++F
Sbjct: 559 EGKSPK-VNKLG-GSEWIKIKTKTRRSIDEIAYNLVKLYAKRNILKGYAYSKDSTWQSQF 616
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
+FPY TPDQ A D+++D+ E + PMDRL+CGDVG+GKTEVALRA+F V +Q
Sbjct: 617 EQEFPYVETPDQLLAIEDIKKDM-ESDKPMDRLLCGDVGYGKTEVALRAMFKAVVDKRQV 675
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
+ L PT +LA QH++ + +RF +P V +LSRF++ +++E L +K G ++IIVGTH
Sbjct: 676 VFLVPTTILADQHYNNIKKRFEGFP-FNVDVLSRFRTTKQQKETLSKLKLGEIDIIVGTH 734
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V + NLGLL++DEEQRFGVK KEKI K S+DVL+LSATPIPRTL++++ G R
Sbjct: 735 RLLSKDVQFKNLGLLIIDEEQRFGVKHKEKIKEMKESIDVLSLSATPIPRTLHMSMVGVR 794
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP +R P++T + +S + V AI E+ R GQ F++ ++ +++ +LQ
Sbjct: 795 DISVIDTPPEDRYPVQTFVVEYSDQLVRGAIMKEISRCGQGFFLYNSVENIDKMNIYLQN 854
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P ++ HGQ R++E+ + KF I L+CT I+E+G+DI+NANTII+ + +F
Sbjct: 855 LVPECRFSVIHGQMGEREIEDILIKFLNKDIDFLVCTTIIETGIDIKNANTIIIHNADKF 914
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR++K A+AYL Y +LS+ A +RL L++ ELG GF++A KD+
Sbjct: 915 GLSQLYQLRGRVGRSNKVAYAYLTYKKDRVLSEVAEKRLKTLKDFTELGSGFKVAMKDLE 974
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G + GE Q G + VG DL+ +ML E K+ + V V +V +DI I+ +
Sbjct: 975 IRGSGNLIGESQHGQMSVVGYDLYCKML-EDAIKMLQGEVTCVEVNTV-VDIKIDVYIKD 1032
Query: 503 EYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI E+ M+ + +K + +D + E L ++ P+ ++ L+K Y+R +
Sbjct: 1033 NYI---EDEMQKLEIYKKISCIEDKKDISYIKEELMDRFSVIPFEIDNLIKISYIRALGK 1089
Query: 562 DIGITKIYASGKMV 575
+G ++I G +
Sbjct: 1090 KLGFSQIKEIGDKI 1103
>gi|409122172|ref|ZP_11221567.1| transcription-repair coupling factor [Gillisia sp. CBA3202]
Length = 1134
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/563 (39%), Positives = 335/563 (59%), Gaps = 18/563 (3%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQ 85
+P + KL + AW+ K K K ++ + +L+ELY R Q+ Y P + E A
Sbjct: 502 KPPKIYKLG-SNAWKNLKQKTKARVKHIAYNLIELYAKRRTQEGFQYGPDSYLQLELEAS 560
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ A DV+ D+ E PMDRL+CGDVGFGKTEVA+RA F V GKQ VL
Sbjct: 561 FLYEDTPDQSTATADVKADM-ESLRPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVL 619
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA QH +ER +P + V L+RF++ E+ E L+ ++ G ++II+GTH L+
Sbjct: 620 VPTTILAFQHHKTFTERLKDFP-VTVDYLNRFRTAKERRETLEDLEKGKVDIIIGTHQLV 678
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
V + +LGLL+VDEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L RD S
Sbjct: 679 NKAVKFKDLGLLIVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLS 738
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
I+TPPP R PI+T++ F +E + AI YE+ RGGQVF++ RI+ ++E +Q+ P
Sbjct: 739 TITTPPPNRYPIETNVIRFGEETIRDAISYEIQRGGQVFFIHNRIENIKEVAGMIQRLVP 798
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
+ + HGQ ++LE+ M F G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 799 DAKVGVGHGQMEGKKLEKLMLSFMNGEFDVLVSTTIIESGLDVTNANTIFINNANNFGLS 858
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P S ++D A +R+ ALE+ ELG G +A KD+ IRG
Sbjct: 859 DLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKRITALEQFSELGSGINIAMKDLEIRG 918
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEH-----------CVISVPYKSVQIDI 494
G + G +Q+G + +G D + ++L E++ ++ E+ V K QID
Sbjct: 919 AGDLLGGEQSGFMNEIGFDTYQKILNEAIEELKENEFKDLYEDTEDIEDKVYVKDTQIDT 978
Query: 495 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+ P +YIN++ + + + ++ L +F L ++G+ P LL +
Sbjct: 979 DFELLFPDDYINNITERLNLYTQLNNIKTEE--ELQKFEADLEDRFGELPIQAIDLLNSV 1036
Query: 555 YVRRMAADIGITK-IYASGKMVG 576
++ +++ IG+ K I GK +G
Sbjct: 1037 RIKWISSHIGLEKVILKHGKFIG 1059
>gi|436833850|ref|YP_007319066.1| transcription-repair coupling factor [Fibrella aestuarina BUZ 2]
gi|384065263|emb|CCG98473.1| transcription-repair coupling factor [Fibrella aestuarina BUZ 2]
Length = 1161
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/554 (39%), Positives = 340/554 (61%), Gaps = 20/554 (3%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI---AEFAA 84
P T+SKL + WE +K+K + ++ + +L+ LY R + P + +P AE +
Sbjct: 541 PPTMSKLG-SQEWELKKSKVRKQVKDIARELITLYAKR--RNAPGFRYSPDSFLQAELES 597
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
F YE TPDQ KA DV+ D+ ER PMDRL+CGDVGFGKTEVA+RA F V+ KQ V
Sbjct: 598 SFIYEDTPDQAKATADVKTDM-ERPHPMDRLVCGDVGFGKTEVAIRAAFKAVTDNKQVAV 656
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
L PT +LA QH++ +R +++P +KVG ++RF+S A+ +E L G L I++GTH +
Sbjct: 657 LVPTTILAMQHYNTFKDRLAQFP-VKVGYINRFKSAAQIKETLRQAASGELGILIGTHRI 715
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264
+ + + +LGLL++DEEQ+FGVK K+++ ++ VDVLTL+ATPIPRTL+ +L G RD
Sbjct: 716 VNKDIKFKDLGLLIIDEEQKFGVKTKDRLKEMRVEVDVLTLTATPIPRTLHFSLMGARDL 775
Query: 265 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 324
S+I+TPPP R P+ T + AFS + A+ YEL RGGQVF V R+ +E + + +
Sbjct: 776 SVIATPPPNRQPVTTEIHAFSDTILRDAVSYELKRGGQVFMVHNRVSDIESIGNKIMRLV 835
Query: 325 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 384
P I IAHGQ +LE+ M +F +G +L+ TNI+ESGLDI NANTII+ FGL
Sbjct: 836 PDARIGIAHGQMEGDRLEKVMTRFIEGETDVLVSTNIIESGLDIPNANTIIINQAHNFGL 895
Query: 385 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIR 444
+ L+Q+RGRVGR++K+A YL P S+L+ A +RL LE+ +LG+GF++A +D+ IR
Sbjct: 896 SDLHQMRGRVGRSNKKAFCYLLTPPASVLTSDARKRLQTLEDFSDLGEGFKIAMRDLDIR 955
Query: 445 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEH----------CVISVPYKSVQIDI 494
G G + G +Q+G V ++G +++ ++L ES+ ++ E V I+
Sbjct: 956 GAGNLLGAEQSGFVNDLGYEMYHQILDESVQELRETEFKELFQETPDVFKPMLPDTVIET 1015
Query: 495 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
++ +P Y+ ++ + + + +D L F + + ++G P ++ L K +
Sbjct: 1016 DLEVLIPETYVTNISERLSLYTRLDNI--KDKAELQAFKKEVADRFGPPPAGVDNLFKMV 1073
Query: 555 YVRRMAADIGITKI 568
VR A ++ + K+
Sbjct: 1074 AVRWKAEELHLEKL 1087
>gi|422811093|ref|ZP_16859504.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J1-208]
gi|378751298|gb|EHY61889.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J1-208]
Length = 1179
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/627 (38%), Positives = 369/627 (58%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 560 EGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 618 EEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K+G ++++VGTH
Sbjct: 677 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 856 MVPDARVATAHGQMGESELEAVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 1032
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 1033 PEYYITDGRQKIEMYKRFRNI--ETLNELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHA 1090
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++G IT +++ G++ ++ ++ F M+ + EG
Sbjct: 1091 LEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----------GVGMEGT 1140
Query: 608 QIKAELLLELPREQLLNWIFQC--LAE 632
Q+K + + + + L W++Q LAE
Sbjct: 1141 QLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|257417623|ref|ZP_05594617.1| transcription-repair coupling factor [Enterococcus faecalis ARO1/DG]
gi|257159451|gb|EEU89411.1| transcription-repair coupling factor [Enterococcus faecalis ARO1/DG]
Length = 1179
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/509 (42%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 553 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 610
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 611 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 669
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 670 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 728
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLLV+DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRLLSQDINFSDLGLLVIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 788
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 789 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 848
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 849 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 908
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 968
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1028 YIPGTYITDERQKIEIYKRIRQLENMDMY 1056
>gi|421512582|ref|ZP_15959385.1| Transcription-repair coupling factor [Enterococcus faecalis ATCC
29212]
gi|401674270|gb|EJS80625.1| Transcription-repair coupling factor [Enterococcus faecalis ATCC
29212]
Length = 1179
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 553 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 610
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 611 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 669
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 670 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 728
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 788
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 789 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 848
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 849 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 908
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 968
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1028 YIPGTYITDERQKIEIYKRIRQLENMDMY 1056
>gi|167766179|ref|ZP_02438232.1| hypothetical protein CLOSS21_00673 [Clostridium sp. SS2/1]
gi|167712259|gb|EDS22838.1| transcription-repair coupling factor [Clostridium sp. SS2/1]
Length = 1173
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/554 (40%), Positives = 344/554 (62%), Gaps = 8/554 (1%)
Query: 26 KRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAA 84
++P+ L KL W++ KT+ K ++ + +L++LY R ++ Y K+ EF
Sbjct: 565 RKPK-LHKLG-GNEWKKTKTRVKGQVKDIAEELVQLYALRQAKEGYVYDKDTVWQKEFEE 622
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
FPY+ T DQ A D +RD+ E + MDRLICGDVG+GKTEVA+RA F V GKQ
Sbjct: 623 LFPYDETQDQLNAIDDTKRDM-ESKKIMDRLICGDVGYGKTEVAIRAAFKAVDNGKQVAY 681
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
L PT +LA+QH++ ++RF YP I V ++SRF + E++E ++ +K+G +++++GTH L
Sbjct: 682 LVPTTILAQQHYNTFAQRFHDYP-ITVRMMSRFCTAKEQKETIEGLKNGTVDVVIGTHRL 740
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264
L + Y NLGLLV+DEEQRFGV KEKI + K VDVL+LSATPIPRTL+++L G RD
Sbjct: 741 LSKDMQYKNLGLLVIDEEQRFGVTHKEKIKTMKKDVDVLSLSATPIPRTLHMSLIGIRDM 800
Query: 265 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 324
S++ PP +R I+T++ +++E V A+ E+ RGGQV+YV R+ + E LQ+
Sbjct: 801 SVLEEPPHDRRAIQTYVMEYNEELVKEAVYREMTRGGQVYYVYNRVNNIAEVTAELQRLL 860
Query: 325 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 384
P +A AHGQ R+LEE M F I +L+ T I+E+GLDI N NT+I+ D Q GL
Sbjct: 861 PDAKVAFAHGQMKERELEEIMMGFMNHEIDVLVSTTIIETGLDIPNVNTMIIHDANQLGL 920
Query: 385 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIR 444
+QLYQLRGRVGR+++ A A+L Y +LL + A +RL A+ E +LG G+++A +D+ IR
Sbjct: 921 SQLYQLRGRVGRSNRNAFAFLMYKKNTLLKETAEKRLQAIREFTDLGSGYKIAMRDLEIR 980
Query: 445 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEY 504
G G + G+ Q+G + VG DL+ +ML E++ ++ + + +D++IN +PS Y
Sbjct: 981 GAGNLLGQAQSGHMEAVGYDLYCKMLNEAVLRLKGELKDEDEFDTT-LDLDINAFIPSTY 1039
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
+ + +E+ +D + T+ L ++G+ P ++ LL Y++ +A
Sbjct: 1040 VYNEYQKLELYKRISSIESKD--EMEDMTDELIDRFGEMPKAVYNLLYVAYLKSLAHHAY 1097
Query: 565 ITKIYASGKMVGMK 578
+T + G+ V +
Sbjct: 1098 MTDVKQKGEKVSFE 1111
>gi|294496926|ref|YP_003560626.1| transcription-repair coupling factor [Bacillus megaterium QM B1551]
gi|294346863|gb|ADE67192.1| transcription-repair coupling factor [Bacillus megaterium QM B1551]
Length = 1176
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/587 (37%), Positives = 361/587 (61%), Gaps = 18/587 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ + KL W++ K K + ++Q + DL++LY R K + P E
Sbjct: 558 SEGKEPK-VYKLGGND-WKKVKRKVESSVQDIADDLIKLYAEREASKGYAFSPDGDLQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY+ T DQ ++ ++++D+ E E PMDRL+CGDVG+GKTEVA+RA F V+ GKQ
Sbjct: 616 FETAFPYQETEDQLRSVQEIKKDM-EHERPMDRLLCGDVGYGKTEVAIRAAFKAVTDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+S+ +++E + +K+G +++++GT
Sbjct: 675 VAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRSRKQQQETIKGLKNGTVDVVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V+Y +LGLLV+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVIYKDLGLLVIDEEQRFGVTHKEKIKQMKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL R GQV+++ R++ +E + +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPVLVREAIERELARDGQVYFLYNRVEDIERKAEEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHG+ +LE + F +G +++ T I+E+G+DI N NT+IV + +
Sbjct: 854 MLVPDARVTYAHGKMNETELEAVILSFLEGEYDVIVSTTIIETGVDIPNVNTLIVNNADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYHKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + SV + +V+++++++ +P
Sbjct: 974 SIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGSDGESVKF-NVEMNLDLDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
+YI +EM + + + + + + ++G+ P +E L K
Sbjct: 1033 DQYITDGRLKIEMYKRFRGI--EGLEDIQELQDEMIDRFGEYPAEVEYLFK--------- 1081
Query: 562 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 608
+ TK+YA+ +V +++ ++ + +S V L GDQ
Sbjct: 1082 -VAETKVYATQNLVESILQSKQEISILLSEEASSTVDGQKLFMLGDQ 1127
>gi|374605016|ref|ZP_09677961.1| transcription-repair coupling factor [Paenibacillus dendritiformis
C454]
gi|374389401|gb|EHQ60778.1| transcription-repair coupling factor [Paenibacillus dendritiformis
C454]
Length = 1176
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/578 (38%), Positives = 351/578 (60%), Gaps = 11/578 (1%)
Query: 8 SCTCGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK 67
S + + +E K P+ + KL T W + K K + +++ + DL++LY R
Sbjct: 534 SVPVDQLHLIQRYVSSEEKEPK-IYKLGGTE-WTKVKNKVRSSVKDIADDLIKLYAARQA 591
Query: 68 QKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTE 126
+ K+ P EF FPYE T DQ +A +++++D+ E PMDRL+CGDVG+GKTE
Sbjct: 592 SSGYAFDKDTPEQQEFEDLFPYEETRDQLRAIVEIKKDM-ELPRPMDRLLCGDVGYGKTE 650
Query: 127 VALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 186
VA+RA F GKQ +L PT +LA+QH++ ERF+ YP + ++SRF+S+ ++ E
Sbjct: 651 VAVRAAFKAAIEGKQVAILVPTTILAQQHYETFRERFADYP-FNIQVMSRFRSRKDQNET 709
Query: 187 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 246
+ +K G +++++GTH LL VV+ LGLL+VDEEQRFGV KEK+ K +VDVLTL+
Sbjct: 710 IKGLKTGVVDVVIGTHRLLSQDVVFKELGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLT 769
Query: 247 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 306
ATPIPRTL++++ G RD S+I TPP R P++T++ +S V AI+ EL R GQV+++
Sbjct: 770 ATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEYSDSLVREAIERELSRDGQVYFL 829
Query: 307 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 366
R++G+ + D ++ P +A++HGQ +LE+T+ F G +L+ T+I+E+G+
Sbjct: 830 FNRVQGIHQMADHIKMLVPEAKVAVSHGQMSETELEKTILDFLDGEYDVLVSTSIIETGV 889
Query: 367 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 426
DI N NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E
Sbjct: 890 DIPNVNTLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLNEVAEKRLQAIKE 949
Query: 427 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCV 482
ELG GF++A +D+ IRG G + G +Q G + +VG DL+ +ML + ++K +D +
Sbjct: 950 FTELGSGFKIAMRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLADEINKRKAELDGVAI 1009
Query: 483 ISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGK 542
S ID+NI+ LP YI +E+ + A + + + + L ++G+
Sbjct: 1010 RDQQELSTLIDLNIDAYLPPNYIYDSIQKIEIYKKV--AGLASLEEVEELRDELIDRFGE 1067
Query: 543 EPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTN 580
P ++ LL ++ A G+ I G V MK +
Sbjct: 1068 PPLAVLQLLAVARLKLHAKQYGLESIVQRGDTVTMKVH 1105
>gi|256762052|ref|ZP_05502632.1| transcription-repair coupling factor [Enterococcus faecalis T3]
gi|256683303|gb|EEU22998.1| transcription-repair coupling factor [Enterococcus faecalis T3]
Length = 1179
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 553 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 610
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 611 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 669
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 670 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 728
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 788
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 789 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 848
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 849 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 908
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 968
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1028 YIPGTYITDERQKIEIYKRIRQLENMDMY 1056
>gi|257084193|ref|ZP_05578554.1| transcription-repair coupling factor [Enterococcus faecalis Fly1]
gi|256992223|gb|EEU79525.1| transcription-repair coupling factor [Enterococcus faecalis Fly1]
Length = 1179
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 553 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 610
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 611 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 669
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 670 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 728
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 788
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 789 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 848
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 849 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 908
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 968
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1028 YIPGTYITDERQKIEIYKRIRQLENMDMY 1056
>gi|430362592|ref|ZP_19427136.1| transcription-repair coupling factor [Enterococcus faecalis OG1X]
gi|430368663|ref|ZP_19428344.1| transcription-repair coupling factor [Enterococcus faecalis M7]
gi|429512106|gb|ELA01725.1| transcription-repair coupling factor [Enterococcus faecalis OG1X]
gi|429516107|gb|ELA05602.1| transcription-repair coupling factor [Enterococcus faecalis M7]
Length = 1179
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 553 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 610
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 611 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 669
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 670 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 728
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 788
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 789 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 848
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 849 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 908
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 968
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1028 YIPGTYITDERQKIEIYKRIRQLENMDMY 1056
>gi|257088697|ref|ZP_05583058.1| transcription-repair coupling factor [Enterococcus faecalis CH188]
gi|397698779|ref|YP_006536567.1| transcription-repair coupling factor [Enterococcus faecalis D32]
gi|256997509|gb|EEU84029.1| transcription-repair coupling factor [Enterococcus faecalis CH188]
gi|397335418|gb|AFO43090.1| transcription-repair coupling factor [Enterococcus faecalis D32]
Length = 1179
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 553 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 610
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 611 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 669
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 670 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 728
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 788
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 789 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 848
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 849 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 908
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 968
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1028 YIPGTYITDERQKIEIYKRIRQLENMDMY 1056
>gi|256964180|ref|ZP_05568351.1| transcription-repair coupling factor [Enterococcus faecalis HIP11704]
gi|256954676|gb|EEU71308.1| transcription-repair coupling factor [Enterococcus faecalis HIP11704]
Length = 1179
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 553 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 610
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 611 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 669
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 670 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 728
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 788
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 789 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 848
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 849 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 908
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 968
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1028 YIPGTYITDERQKIEIYKRIRQLENMDMY 1056
>gi|255971757|ref|ZP_05422343.1| transcription-repair coupling factor [Enterococcus faecalis T1]
gi|257421547|ref|ZP_05598537.1| transcription-repair coupling factor [Enterococcus faecalis X98]
gi|384517337|ref|YP_005704642.1| transcription-repair coupling factor [Enterococcus faecalis 62]
gi|255962775|gb|EET95251.1| transcription-repair coupling factor [Enterococcus faecalis T1]
gi|257163371|gb|EEU93331.1| transcription-repair coupling factor [Enterococcus faecalis X98]
gi|323479470|gb|ADX78909.1| transcription-repair coupling factor [Enterococcus faecalis 62]
Length = 1179
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 553 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 610
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 611 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 669
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 670 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 728
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 788
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 789 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 848
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 849 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 908
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 968
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1028 YIPGTYITDERQKIEIYKRIRQLENMDMY 1056
>gi|257088020|ref|ZP_05582381.1| transcription-repair coupling factor [Enterococcus faecalis D6]
gi|256996050|gb|EEU83352.1| transcription-repair coupling factor [Enterococcus faecalis D6]
Length = 1179
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/533 (40%), Positives = 337/533 (63%), Gaps = 8/533 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 553 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 610
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 611 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 669
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 670 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 728
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 788
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 789 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 848
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 849 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 908
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 968
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
+P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1028 YIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1078
>gi|256855211|ref|ZP_05560572.1| transcription-repair coupling factor [Enterococcus faecalis T8]
gi|256709724|gb|EEU24771.1| transcription-repair coupling factor [Enterococcus faecalis T8]
Length = 1179
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 553 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 610
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 611 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 669
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 670 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 728
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 788
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 789 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 848
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 849 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 908
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 968
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1028 YIPGTYITDERQKIEIYKRIRQLENMDMY 1056
>gi|416111695|ref|ZP_11592792.1| transcription-repair coupling factor [Riemerella anatipestifer RA-YM]
gi|315022463|gb|EFT35490.1| transcription-repair coupling factor [Riemerella anatipestifer RA-YM]
Length = 1096
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/554 (40%), Positives = 335/554 (60%), Gaps = 21/554 (3%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPY 88
TLSK+ + +W+ K K K ++++ DL++LY R K Y P E A F Y
Sbjct: 475 TLSKIG-SPSWKNLKNKTKAKVKQIAFDLIKLYAKRKTAKGFAYTPDTYLQNELEASFLY 533
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
E TPDQ+KA LDV+RD+ E +T MDRL+CGDVGFGKTEVA+RA F + GKQ VL PT
Sbjct: 534 EDTPDQEKATLDVKRDM-EADTIMDRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVLVPT 592
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
+LA QH+ +ER +P + + L+RF++ +K E L+ + G ++II+GTH L +
Sbjct: 593 TILAFQHYRSFAERLKDFP-VNISYLNRFRTAKQKRETLEKLAEGKIDIIIGTHQLASDK 651
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
V + +LGLL++DEE +FGV K+K+ + K ++D LTL+ATPIPRTL +L RD S+I
Sbjct: 652 VKFKDLGLLIIDEEHKFGVSVKDKLKTLKANIDTLTLTATPIPRTLQFSLMAARDLSVIK 711
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
TPPP R P++T L F +E + AI YEL R GQV+++ RI L++ +Q+ P
Sbjct: 712 TPPPNRQPVETQLIGFDEEIIRDAISYELQRDGQVYFINNRIDNLKDIAGMIQRLVPDAR 771
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+ HGQ +QLEE + F +G +L+ T IVESG+D+ NANTI + D Q+FG+A ++
Sbjct: 772 VITGHGQMDGKQLEENILDFMEGRYDVLVSTTIVESGVDVPNANTIFINDAQRFGMADVH 831
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ+A KD+ IRG G
Sbjct: 832 QMRGRVGRSNRKAFCYLITPPFDMVTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGD 891
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY-------------KSVQIDIN 495
+ G +Q+G + +G + + +++ ESL ++ + K V ID +
Sbjct: 892 LLGAEQSGFINEMGFETYQKIMQESLEELQNDAEFESLFENEADRKKLFKSSKDVNIDTD 951
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+ LP Y++ E E +N +K AE + L +F L ++G P LLK +
Sbjct: 952 LELMLPDSYVSSTE---ERLNLYQKLAEINNKEELKRFEAELEDRFGSLPEEAINLLKSV 1008
Query: 555 YVRRMAADIGITKI 568
++ +AA IG KI
Sbjct: 1009 ELKWLAAAIGFEKI 1022
>gi|257078484|ref|ZP_05572845.1| transcription-repair coupling factor [Enterococcus faecalis JH1]
gi|256986514|gb|EEU73816.1| transcription-repair coupling factor [Enterococcus faecalis JH1]
Length = 1179
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 553 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 610
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 611 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 669
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 670 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 728
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 788
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 789 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 848
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 849 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 908
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 968
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1028 YIPGTYITDERQKIEIYKRIRQLENMDMY 1056
>gi|255974757|ref|ZP_05425343.1| transcription-repair coupling factor [Enterococcus faecalis T2]
gi|255967629|gb|EET98251.1| transcription-repair coupling factor [Enterococcus faecalis T2]
Length = 1179
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 553 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 610
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 611 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 669
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 670 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 728
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 788
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 789 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 848
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 849 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 908
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 968
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1028 YIPGTYITDERQKIEIYKRIRQLENMDMY 1056
>gi|256956814|ref|ZP_05560985.1| transcription-repair coupling factor [Enterococcus faecalis DS5]
gi|256960620|ref|ZP_05564791.1| transcription-repair coupling factor [Enterococcus faecalis Merz96]
gi|257081545|ref|ZP_05575906.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol]
gi|294779317|ref|ZP_06744720.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1]
gi|300861968|ref|ZP_07108048.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD
Ef11]
gi|428765878|ref|YP_007151989.1| transcription-repair-coupling factor [Enterococcus faecalis str.
Symbioflor 1]
gi|256947310|gb|EEU63942.1| transcription-repair coupling factor [Enterococcus faecalis DS5]
gi|256951116|gb|EEU67748.1| transcription-repair coupling factor [Enterococcus faecalis Merz96]
gi|256989575|gb|EEU76877.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol]
gi|294453603|gb|EFG22002.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1]
gi|300848493|gb|EFK76250.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD
Ef11]
gi|427184051|emb|CCO71275.1| transcription-repair-coupling factor [Enterococcus faecalis str.
Symbioflor 1]
Length = 1179
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 553 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 610
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 611 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 669
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 670 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 728
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 788
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 789 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 848
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 849 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 908
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 968
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1028 YIPGTYITDERQKIEIYKRIRQLENMDMY 1056
>gi|384049326|ref|YP_005497343.1| transcription-repair coupling factor (Helicase, mfd) [Bacillus
megaterium WSH-002]
gi|345447017|gb|AEN92034.1| Transcription-repair coupling factor (Helicase, mfd) [Bacillus
megaterium WSH-002]
Length = 1176
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/588 (38%), Positives = 362/588 (61%), Gaps = 20/588 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ + KL W++ K K + ++Q + DL++LY R K + P E
Sbjct: 558 SEGKEPK-VYKLGGND-WKKVKRKVESSVQDIADDLIKLYAEREASKGYAFSPDGDLQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY+ T DQ ++ ++++D+ E E PMDRL+CGDVG+GKTEVA+RA F V+ GKQ
Sbjct: 616 FETAFPYQETEDQLRSVQEIKKDM-EHERPMDRLLCGDVGYGKTEVAIRAAFKAVTDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+S+ +++E + +K+G +++++GT
Sbjct: 675 VAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRSRKQQQETIKGLKNGTVDVVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V+Y +LGLLV+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVIYKDLGLLVIDEEQRFGVTHKEKIKQMKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL R GQV+++ R++ +E + +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPVLVREAIERELARDGQVYFLYNRVEDIERKAEEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHG+ +LE + F +G +++ T I+E+G+DI N NT+IV + +
Sbjct: 854 MLVPDARVTYAHGKMNETELEAVILSFLEGEYDVIVSTTIIETGVDIPNVNTLIVNNADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYHKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + SV + +V+++++++ +P
Sbjct: 974 SIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGSDGESVKF-NVEMNLDLDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
+YI +EM A +DI + + + ++G+ P +E L K
Sbjct: 1033 DQYITDGRLKIEMYKRFRGIEALEDI---QELQDEMIDRFGEYPAEVEYLFK-------- 1081
Query: 561 ADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 608
+ TK+YA+ +V +++ ++ + +S + L GDQ
Sbjct: 1082 --VAETKVYATQNLVESILQSKQEISILLSEEASSTIDGQKLFMLGDQ 1127
>gi|257418651|ref|ZP_05595645.1| transcription-repair coupling factor [Enterococcus faecalis T11]
gi|257160479|gb|EEU90439.1| transcription-repair coupling factor [Enterococcus faecalis T11]
Length = 1179
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/533 (40%), Positives = 337/533 (63%), Gaps = 8/533 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 553 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 610
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 611 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 669
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 670 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 728
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 788
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 789 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 848
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 849 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 908
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 968
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
+P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1028 YIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1078
>gi|312904634|ref|ZP_07763789.1| transcription-repair coupling factor [Enterococcus faecalis TX0635]
gi|422687624|ref|ZP_16745800.1| transcription-repair coupling factor [Enterococcus faecalis TX0630]
gi|422733279|ref|ZP_16789600.1| transcription-repair coupling factor [Enterococcus faecalis TX0645]
gi|310631986|gb|EFQ15269.1| transcription-repair coupling factor [Enterococcus faecalis TX0635]
gi|315160777|gb|EFU04794.1| transcription-repair coupling factor [Enterococcus faecalis TX0645]
gi|315579376|gb|EFU91567.1| transcription-repair coupling factor [Enterococcus faecalis TX0630]
Length = 1189
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 563 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 620
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 621 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 680 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 739 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 799 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 859 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 919 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 979 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1037
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1038 YIPGTYITDERQKIEIYKRIRQLENMDMY 1066
>gi|222056789|ref|YP_002539151.1| transcription-repair coupling factor [Geobacter daltonii FRC-32]
gi|221566078|gb|ACM22050.1| transcription-repair coupling factor [Geobacter daltonii FRC-32]
Length = 1169
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 225/539 (41%), Positives = 336/539 (62%), Gaps = 11/539 (2%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
WE+ K K + AIQ+M +L+++Y R ++ + P + EF A F YE TPDQ+
Sbjct: 579 AGWEKTKAKARAAIQEMAGELLKIYAARQVEEGHAFSPPDELYQEFEAAFAYEETPDQQA 638
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A DV D+ E + PMDRLICGDVG+GKTEVALR F V GKQ VL PT VLA+QH
Sbjct: 639 AIEDVLLDM-ESKKPMDRLICGDVGYGKTEVALRGAFKAVMDGKQVAVLVPTTVLAQQHL 697
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ S R YP +KV +LSRF++ E++E ++ +K+G +++++GTH LL +V+ +LGL
Sbjct: 698 ETFSARLKSYP-VKVEMLSRFRTPKEQKEIIEGVKNGTVDVVIGTHRLLQKDIVFKDLGL 756
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L++DEEQRFGV KE++ ++ VD++TL+ATPIPRTLY++L G RD S+I TPP +RL
Sbjct: 757 LIIDEEQRFGVTHKERLKKYRAVVDIMTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLA 816
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
IKT ++ S + + A+ EL RGGQ+F+V R++ + + LQ+ P IA+ HGQ
Sbjct: 817 IKTFVARTSDDLIREAVLRELRRGGQIFFVHNRVQTIGAMAEHLQRIVPEAKIAVGHGQM 876
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
++LE M F G +L+CT I+ESGLDI ANT+IV FGL+QLYQLRGRVGR
Sbjct: 877 EEKELERVMLSFMHGESNLLLCTTIIESGLDIPTANTLIVNRADTFGLSQLYQLRGRVGR 936
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ + A+AYL P + +S A ERL ++E ELG GF++A D+ IRG G + G +Q+G
Sbjct: 937 SKQRAYAYLLIPGEGAISADARERLKIIQELTELGAGFRIATHDLEIRGAGDLLGARQSG 996
Query: 457 DVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPSEYINHLENPMEMV 515
D+ VG +L+ E+L E++ ++ E V +I + I +P +Y+ + +
Sbjct: 997 DIAAVGFELYTELLEEAIRQLKGEELAERV---EPEIKLRIPAFIPEDYVREPNQRLIIY 1053
Query: 516 NEAEKA-AEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
+A +E+D+ +M L ++GK P + L++ + +R + + +I GK
Sbjct: 1054 KRLTQATSEEDVAEIMG---ELVDRFGKLPLAALYLVEVMKLRVALKAMLVKEIEFDGK 1109
>gi|307276446|ref|ZP_07557569.1| transcription-repair coupling factor [Enterococcus faecalis TX2134]
gi|306506926|gb|EFM76073.1| transcription-repair coupling factor [Enterococcus faecalis TX2134]
Length = 1189
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 563 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 620
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 621 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 680 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 739 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 799 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 859 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 919 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 979 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1037
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1038 YIPGTYITDERQKIEIYKRIRQLENMDMY 1066
>gi|81429216|ref|YP_396217.1| transcription-repair coupling factor [Lactobacillus sakei subsp.
sakei 23K]
gi|78610859|emb|CAI55911.1| Transcription-repair coupling factor (TRCF) [Lactobacillus sakei
subsp. sakei 23K]
Length = 1173
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 228/611 (37%), Positives = 372/611 (60%), Gaps = 21/611 (3%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEF 82
E+K P+ ++KL W++ K+K I+ + DL+ELY R +K +PK+ + A+F
Sbjct: 556 ESKTPK-INKLGGA-EWQKTKSKVSAKIEDIADDLIELYAQREAEKGYAFPKDDQLQADF 613
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
QF Y T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F V+AGKQ
Sbjct: 614 ENQFAYPETDDQLRSTAEIKHDM-EKVRPMDRLLVGDVGFGKTEVALRAAFKAVAAGKQV 672
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QH++ + RF+ +P +++GLLSRF+++ E L ++ G ++I++GTH
Sbjct: 673 AFLVPTTILAQQHYENMLARFADFP-VELGLLSRFKTRKEVTATLKGLEKGQVDIVIGTH 731
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL VV+ +LGLL+VDEEQRFGVK KE++ K VDVLTL+ATPIPRTL++++ G R
Sbjct: 732 RLLSKDVVFKDLGLLIVDEEQRFGVKHKERLKQLKAQVDVLTLTATPIPRTLHMSMLGVR 791
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R PI+T++ + + AI+ EL+R GQVFY+ R+ +E+ +D +Q
Sbjct: 792 DLSVIETPPTNRYPIQTYVMEQNAGAMREAIERELERNGQVFYLHNRVSDIEQTVDEIQA 851
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P + AHGQ QLE + F QG +L+ T I+E+G+D+ N NT+IV+D +
Sbjct: 852 LVPEATVGYAHGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNVNTMIVEDADHY 911
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGR+GR+ + A+ Y Y +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 GLSQLYQLRGRIGRSSRVAYGYFMYKPDKVLTEVSEKRLQAIKDFTELGSGFKIAMRDLS 971
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G + G+QQ G + +VG DL+ +ML E+++K V + + +ID+ + LP
Sbjct: 972 IRGAGNLLGKQQHGFIDSVGFDLYSQMLSEAVAKKQGKKVAA--KTNAEIDLKLEAYLPD 1029
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
+YIN +E+ + + + +Q L ++G P + LL ++ A D
Sbjct: 1030 DYINDQRQKIEIYKRIRQMDTEAAFTEIQ--SDLIDRFGDYPVQVAHLLTIGQLKMNADD 1087
Query: 563 IGITKIYASGKMV-------GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLL 615
I I + G + +++F +++++ + ++ FE +++ L++
Sbjct: 1088 ALIETIKQVKDKIQVVLSPKGSRLVSGEQIF----EALSATRLKATVGFEQEKLSVTLII 1143
Query: 616 ELPREQLLNWI 626
+ P+ + +W+
Sbjct: 1144 Q-PKMKTGDWL 1153
>gi|422698801|ref|ZP_16756686.1| transcription-repair coupling factor [Enterococcus faecalis TX1346]
gi|315172643|gb|EFU16660.1| transcription-repair coupling factor [Enterococcus faecalis TX1346]
Length = 1189
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 563 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 620
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 621 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 680 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 739 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 799 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 859 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 919 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 979 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1037
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1038 YIPGTYITDERQKIEIYKRIRQLENMDMY 1066
>gi|422867415|ref|ZP_16914000.1| TRCF domain protein, partial [Enterococcus faecalis TX1467]
gi|329577423|gb|EGG58873.1| TRCF domain protein [Enterococcus faecalis TX1467]
Length = 637
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 11 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 68
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 69 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 127
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 128 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 186
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 187 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 246
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 247 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 306
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 307 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 366
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 367 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 426
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 427 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 485
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 486 YIPGTYITDERQKIEIYKRIRQLENMDMY 514
>gi|408410493|ref|ZP_11181704.1| Transcription-repair coupling factor [Lactobacillus sp. 66c]
gi|408410714|ref|ZP_11181916.1| Transcription-repair coupling factor [Lactobacillus sp. 66c]
gi|407875115|emb|CCK83722.1| Transcription-repair coupling factor [Lactobacillus sp. 66c]
gi|407875336|emb|CCK83510.1| Transcription-repair coupling factor [Lactobacillus sp. 66c]
Length = 1157
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/531 (41%), Positives = 334/531 (62%), Gaps = 11/531 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P ++KL + W + K K + ++ + DL++LY R +K + P P A
Sbjct: 542 SEGKTPH-INKLG-GSEWAKTKRKVQARVEDIADDLIDLYSKRESEKGYAFSPDGPDQAA 599
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPYEPT DQ +A +++ D+ E+ PMDRL+ GDVGFGKTEVA+RA F + GKQ
Sbjct: 600 FEAAFPYEPTADQLRASAEIKADM-EKPKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQ 658
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH+ + +RF +P ++V +LSRFQ+K+E +E + +K G ++++VGT
Sbjct: 659 VAFLVPTTILAQQHYQTIKDRFRDFP-VEVAVLSRFQTKSESKEITEGLKDGSIDLVVGT 717
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V + +LGLL++DEEQRFGVK KEK+ K ++DVLTL+ATPIPRTL++++ G
Sbjct: 718 HRLLSKDVKFKDLGLLIIDEEQRFGVKHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGI 777
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S++ TPP R PI+T++ V A + E+ RGGQVFY+ R+ +EE + L+
Sbjct: 778 RDLSVMETPPKNRYPIQTYVLEQLPATVKEACQREMQRGGQVFYLHNRVGDIEETVGRLE 837
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
Q P IA AHGQ QLE+ + +F G IL+ T I+E+G+D+ N NT+IV+D
Sbjct: 838 QLLPNARIAFAHGQMGEGQLEDILARFLAGDYDILVTTTIIETGIDMPNVNTLIVEDADH 897
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
+GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG GF++A +D+
Sbjct: 898 YGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDL 957
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML +++ K +V + ++D+ + +P
Sbjct: 958 SIRGAGNMLGAQQHGFIDSVGYDLYSQMLADAIKK--RQGKKTVVKSNAEVDLGLEAYIP 1015
Query: 502 SEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
YI E +E + + +EQD L + L ++G P ++E LL
Sbjct: 1016 DSYIADQEQKIEFYKKIKAINSEQD---LEDVEDELLDRFGDYPEAVENLL 1063
>gi|422702615|ref|ZP_16760444.1| transcription-repair coupling factor [Enterococcus faecalis TX1302]
gi|315165851|gb|EFU09868.1| transcription-repair coupling factor [Enterococcus faecalis TX1302]
Length = 1189
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 563 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 620
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 621 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 680 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 739 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 799 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 859 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 919 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 979 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1037
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1038 YIPGTYITDERQKIEIYKRIRQLENMDMY 1066
>gi|293382707|ref|ZP_06628632.1| transcription-repair coupling factor [Enterococcus faecalis R712]
gi|293388111|ref|ZP_06632638.1| transcription-repair coupling factor [Enterococcus faecalis S613]
gi|307268510|ref|ZP_07549885.1| transcription-repair coupling factor [Enterococcus faecalis TX4248]
gi|312908603|ref|ZP_07767545.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
512]
gi|312909249|ref|ZP_07768106.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
516]
gi|422695394|ref|ZP_16753380.1| transcription-repair coupling factor [Enterococcus faecalis TX4244]
gi|422708808|ref|ZP_16766329.1| transcription-repair coupling factor [Enterococcus faecalis TX0027]
gi|422719761|ref|ZP_16776385.1| transcription-repair coupling factor [Enterococcus faecalis TX0017]
gi|291079867|gb|EFE17231.1| transcription-repair coupling factor [Enterococcus faecalis R712]
gi|291082487|gb|EFE19450.1| transcription-repair coupling factor [Enterococcus faecalis S613]
gi|306515171|gb|EFM83711.1| transcription-repair coupling factor [Enterococcus faecalis TX4248]
gi|310625390|gb|EFQ08673.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
512]
gi|311290491|gb|EFQ69047.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
516]
gi|315032977|gb|EFT44909.1| transcription-repair coupling factor [Enterococcus faecalis TX0017]
gi|315036610|gb|EFT48542.1| transcription-repair coupling factor [Enterococcus faecalis TX0027]
gi|315147120|gb|EFT91136.1| transcription-repair coupling factor [Enterococcus faecalis TX4244]
Length = 1189
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/533 (40%), Positives = 337/533 (63%), Gaps = 8/533 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 563 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 620
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 621 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 680 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 739 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 799 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 859 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 919 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 979 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1037
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
+P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1038 YIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|409351253|ref|ZP_11234046.1| Transcription-repair coupling factor [Lactobacillus equicursoris CIP
110162]
gi|407876865|emb|CCK86104.1| Transcription-repair coupling factor [Lactobacillus equicursoris CIP
110162]
Length = 1157
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/531 (41%), Positives = 334/531 (62%), Gaps = 11/531 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P ++KL + W + K K + ++ + DL++LY R +K + P P A
Sbjct: 542 SEGKTPH-INKLG-GSEWAKTKRKVQARVEDIADDLIDLYSKRESEKGYAFSPDGPDQAA 599
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPYEPT DQ +A +++ D+ E+ PMDRL+ GDVGFGKTEVA+RA F + GKQ
Sbjct: 600 FEAAFPYEPTADQLRASAEIKADM-EKPKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQ 658
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH+ + +RF +P ++V +LSRFQ+K+E +E + +K G ++++VGT
Sbjct: 659 VAFLVPTTILAQQHYQTIKDRFRDFP-VEVAVLSRFQTKSESKEITEGLKDGSIDLVVGT 717
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V + +LGLL++DEEQRFGVK KEK+ K ++DVLTL+ATPIPRTL++++ G
Sbjct: 718 HRLLSKDVKFKDLGLLIIDEEQRFGVKHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGI 777
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S++ TPP R PI+T++ V A + E+ RGGQVFY+ R+ +EE + L+
Sbjct: 778 RDLSVMETPPKNRYPIQTYVLEQLPATVKEACQREMQRGGQVFYLHNRVGDIEETVGRLE 837
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
Q P IA AHGQ QLE+ + +F G IL+ T I+E+G+D+ N NT+IV+D
Sbjct: 838 QLLPNARIAFAHGQMGEGQLEDILARFLAGDYDILVTTTIIETGIDMPNVNTLIVEDADH 897
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
+GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG GF++A +D+
Sbjct: 898 YGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDL 957
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML +++ K +V + ++D+ + +P
Sbjct: 958 SIRGAGNMLGAQQHGFIDSVGYDLYSQMLADAIKK--RQGKKTVVKSNAEVDLGLEAYIP 1015
Query: 502 SEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
YI E +E + + +EQD L + L ++G P ++E LL
Sbjct: 1016 DSYIADQEQKIEFYKKIKAINSEQD---LEDVEDELLDRFGDYPEAVENLL 1063
>gi|307274221|ref|ZP_07555429.1| transcription-repair coupling factor [Enterococcus faecalis TX0855]
gi|422728433|ref|ZP_16784851.1| transcription-repair coupling factor [Enterococcus faecalis TX0012]
gi|306509183|gb|EFM78245.1| transcription-repair coupling factor [Enterococcus faecalis TX0855]
gi|315151127|gb|EFT95143.1| transcription-repair coupling factor [Enterococcus faecalis TX0012]
Length = 1189
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/533 (40%), Positives = 337/533 (63%), Gaps = 8/533 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 563 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 620
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 621 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 680 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 739 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 799 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 859 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 919 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 979 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1037
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
+P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1038 YIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|386774080|ref|ZP_10096458.1| transcription-repair coupling factor Mfd [Brachybacterium
paraconglomeratum LC44]
Length = 1227
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 219/539 (40%), Positives = 337/539 (62%), Gaps = 11/539 (2%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFPYEPTPDQKK 96
W + K+K + AI+++ +L+ LY R Q P + P P E F + TPDQ
Sbjct: 611 WAKTKSKARKAIREIADELVRLYSAR--QSAPGHAFGPDTPWQRELEDSFEFVETPDQLS 668
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
DV++D+ E+ PMDRLI GDVG+GKTE+A+RA F V GKQ VLAPT +LA+QH
Sbjct: 669 TIEDVKKDM-EKPVPMDRLILGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLLAQQHL 727
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
D SER++ +P + V LSRFQS A+ E ++ ++ G ++I++GTH LL V + +LGL
Sbjct: 728 DTFSERYTGFP-VTVKGLSRFQSAADSEATVEGLREGSVDIVIGTHRLLTGNVRFKDLGL 786
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L++DEEQRFGV+ KE + + + +VDVL++SATPIPRTL +A+TG R+ S+++TPP ER P
Sbjct: 787 LIIDEEQRFGVEHKETLKALRTNVDVLSMSATPIPRTLEMAVTGIREMSILATPPEERHP 846
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
+ T++ A ++ +AI+ EL R GQVFY+ R++ ++ L++ P +A+AHG+
Sbjct: 847 VLTYVGADEDRQIAAAIRRELLREGQVFYIHNRVEDIDRVAAHLRELVPDARVAVAHGKM 906
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
QLE + F + +L+CT IVE+GLDI NANT+IV++ +FGL+QL+QLRGRVGR
Sbjct: 907 NEHQLERVIVDFWERDFDVLVCTTIVETGLDIANANTLIVENADRFGLSQLHQLRGRVGR 966
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ + A+AY Y L++ A +RL L +LG G Q+A KD+ IRG G + G +Q+G
Sbjct: 967 SSERAYAYFLYNAGKPLTETAHDRLTTLATNTDLGAGMQVAMKDLEIRGAGNLLGGEQSG 1026
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ VG DL+ M+ E+++ S P K +++++ ++ +P +YI +E
Sbjct: 1027 HIAGVGFDLYVRMVGEAVAAFRGEA--SAPEKEIRVELPLDAHVPHDYIGSERLRLEAY- 1083
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 575
A+ +A +++ + Q L +YG P +E+LL R A G+ ++ A GKM+
Sbjct: 1084 -AKLSAVREVSEIEQVRAELADRYGPLPAPVEVLLDVARFRIDARAAGVDEVQAQGKMI 1141
>gi|422738809|ref|ZP_16793996.1| transcription-repair coupling factor [Enterococcus faecalis TX2141]
gi|315145387|gb|EFT89403.1| transcription-repair coupling factor [Enterococcus faecalis TX2141]
Length = 1189
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 563 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 620
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 621 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 680 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 739 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 799 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 859 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 919 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 979 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1037
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1038 YIPGTYITDERQKIEIYKRIRQLENMDMY 1066
>gi|307278656|ref|ZP_07559726.1| transcription-repair coupling factor [Enterococcus faecalis TX0860]
gi|306504716|gb|EFM73916.1| transcription-repair coupling factor [Enterococcus faecalis TX0860]
Length = 1189
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 563 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 620
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 621 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 680 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 739 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 799 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 859 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 919 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 979 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1037
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1038 YIPGTYITDERQKIEIYKRIRQLENMDMY 1066
>gi|384512165|ref|YP_005707258.1| transcription-repair coupling factor [Enterococcus faecalis OG1RF]
gi|327534054|gb|AEA92888.1| transcription-repair coupling factor [Enterococcus faecalis OG1RF]
Length = 1189
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 563 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 620
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 621 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 680 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 739 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 799 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 859 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 919 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 979 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1037
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1038 YIPGTYITDERQKIEIYKRIRQLENMDMY 1066
>gi|229550502|ref|ZP_04439227.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
29200]
gi|307286964|ref|ZP_07567039.1| transcription-repair coupling factor [Enterococcus faecalis TX0109]
gi|307290197|ref|ZP_07570115.1| transcription-repair coupling factor [Enterococcus faecalis TX0411]
gi|422686433|ref|ZP_16744630.1| transcription-repair coupling factor [Enterococcus faecalis TX4000]
gi|422700060|ref|ZP_16757916.1| transcription-repair coupling factor [Enterococcus faecalis TX1342]
gi|422735114|ref|ZP_16791394.1| transcription-repair coupling factor [Enterococcus faecalis TX1341]
gi|229304359|gb|EEN70355.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
29200]
gi|306498753|gb|EFM68252.1| transcription-repair coupling factor [Enterococcus faecalis TX0411]
gi|306501910|gb|EFM71199.1| transcription-repair coupling factor [Enterococcus faecalis TX0109]
gi|315028825|gb|EFT40757.1| transcription-repair coupling factor [Enterococcus faecalis TX4000]
gi|315168150|gb|EFU12167.1| transcription-repair coupling factor [Enterococcus faecalis TX1341]
gi|315171410|gb|EFU15427.1| transcription-repair coupling factor [Enterococcus faecalis TX1342]
Length = 1189
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 563 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 620
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 621 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 680 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 739 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 799 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 859 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 919 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 979 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1037
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1038 YIPGTYITDERQKIEIYKRIRQLENMDMY 1066
>gi|227520043|ref|ZP_03950092.1| transcription-repair coupling factor [Enterococcus faecalis TX0104]
gi|424678904|ref|ZP_18115742.1| transcription-repair coupling factor [Enterococcus faecalis ERV103]
gi|424679717|ref|ZP_18116531.1| transcription-repair coupling factor [Enterococcus faecalis ERV116]
gi|424684124|ref|ZP_18120850.1| transcription-repair coupling factor [Enterococcus faecalis ERV129]
gi|424688435|ref|ZP_18125041.1| transcription-repair coupling factor [Enterococcus faecalis ERV25]
gi|424691551|ref|ZP_18128074.1| transcription-repair coupling factor [Enterococcus faecalis ERV31]
gi|424695121|ref|ZP_18131505.1| transcription-repair coupling factor [Enterococcus faecalis ERV37]
gi|424696489|ref|ZP_18132834.1| transcription-repair coupling factor [Enterococcus faecalis ERV41]
gi|424701879|ref|ZP_18138045.1| transcription-repair coupling factor [Enterococcus faecalis ERV62]
gi|424704935|ref|ZP_18141021.1| transcription-repair coupling factor [Enterococcus faecalis ERV63]
gi|424706360|ref|ZP_18142367.1| transcription-repair coupling factor [Enterococcus faecalis ERV65]
gi|424719051|ref|ZP_18148279.1| transcription-repair coupling factor [Enterococcus faecalis ERV68]
gi|424719971|ref|ZP_18149097.1| transcription-repair coupling factor [Enterococcus faecalis ERV72]
gi|424733455|ref|ZP_18162015.1| transcription-repair coupling factor [Enterococcus faecalis ERV81]
gi|424735225|ref|ZP_18163695.1| transcription-repair coupling factor [Enterococcus faecalis ERV85]
gi|424754569|ref|ZP_18182478.1| transcription-repair coupling factor [Enterococcus faecalis ERV93]
gi|227072591|gb|EEI10554.1| transcription-repair coupling factor [Enterococcus faecalis TX0104]
gi|402350607|gb|EJU85509.1| transcription-repair coupling factor [Enterococcus faecalis ERV103]
gi|402355672|gb|EJU90434.1| transcription-repair coupling factor [Enterococcus faecalis ERV116]
gi|402360879|gb|EJU95473.1| transcription-repair coupling factor [Enterococcus faecalis ERV25]
gi|402362106|gb|EJU96646.1| transcription-repair coupling factor [Enterococcus faecalis ERV31]
gi|402362681|gb|EJU97199.1| transcription-repair coupling factor [Enterococcus faecalis ERV129]
gi|402368968|gb|EJV03267.1| transcription-repair coupling factor [Enterococcus faecalis ERV37]
gi|402370843|gb|EJV05032.1| transcription-repair coupling factor [Enterococcus faecalis ERV62]
gi|402377531|gb|EJV11429.1| transcription-repair coupling factor [Enterococcus faecalis ERV41]
gi|402380127|gb|EJV13896.1| transcription-repair coupling factor [Enterococcus faecalis ERV68]
gi|402380545|gb|EJV14295.1| transcription-repair coupling factor [Enterococcus faecalis ERV63]
gi|402388168|gb|EJV21617.1| transcription-repair coupling factor [Enterococcus faecalis ERV65]
gi|402391823|gb|EJV25103.1| transcription-repair coupling factor [Enterococcus faecalis ERV81]
gi|402394934|gb|EJV28081.1| transcription-repair coupling factor [Enterococcus faecalis ERV72]
gi|402403018|gb|EJV35710.1| transcription-repair coupling factor [Enterococcus faecalis ERV93]
gi|402404115|gb|EJV36746.1| transcription-repair coupling factor [Enterococcus faecalis ERV85]
Length = 1189
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 563 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 620
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 621 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 680 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 739 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 799 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 859 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 919 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 979 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1037
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1038 YIPGTYITDERQKIEIYKRIRQLENMDMY 1066
>gi|418990393|ref|ZP_13538055.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1096]
gi|377723822|gb|EHT47944.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1096]
Length = 1168
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 219/548 (39%), Positives = 348/548 (63%), Gaps = 7/548 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTENAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGIT 566
A GIT
Sbjct: 1084 HALHSGIT 1091
>gi|238917833|ref|YP_002931350.1| transcription-repair coupling factor [Eubacterium eligens ATCC 27750]
gi|238873193|gb|ACR72903.1| transcription-repair coupling factor (superfamily II helicase)
[Eubacterium eligens ATCC 27750]
Length = 1206
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/547 (40%), Positives = 336/547 (61%), Gaps = 15/547 (2%)
Query: 26 KRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA---EF 82
K+P+ L+K+ + W + K+K A++++ DL+ELY R Q+ Y P EF
Sbjct: 586 KKPK-LNKIG-GSEWGKTKSKVHSAVEEVAKDLVELYATR--QRIEGYQFGPDTVWQQEF 641
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPYE T DQ A D + D+ R MDRLICGDVG+GKTE+A+RA F V GKQ
Sbjct: 642 EEMFPYEETTDQLNAIEDTKHDMESRRV-MDRLICGDVGYGKTEIAIRAAFKAVQEGKQV 700
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT VLA QHF +R +P + V LS F++ A+ +E ++ +K G ++I++GTH
Sbjct: 701 AYLVPTTVLASQHFTTFEQRMKDFP-VTVAQLSSFRTSAQNKETIEELKKGMVDIVIGTH 759
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL VV+ +LGLL++DEEQRFGV KEKI K +VDVLTLSATPIPRTL+++L G R
Sbjct: 760 RLLSKDVVFKDLGLLIIDEEQRFGVTHKEKIKKLKNNVDVLTLSATPIPRTLHMSLAGIR 819
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S++ PP +R+PI+T ++ + E + AI EL R GQV+YV R++ ++E +Q+
Sbjct: 820 DMSVLEEPPVDRVPIQTFVTEHNDEMIREAITRELARNGQVYYVYNRVRSIDEAAAHIQE 879
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P ++A AHGQ R+LE+ M F G I +L+ T I+E+G+DI N NT+I++D +F
Sbjct: 880 LVPDANVAYAHGQMAKRELEKIMCDFVNGEIDVLVSTTIIETGMDISNCNTMIIEDADRF 939
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR+ + A+A+L Y +L++ A +RL+ + E + G GF++A KD+
Sbjct: 940 GLSQLYQLRGRVGRSSRTAYAFLLYRRDKVLTEVAEKRLSVIREFADFGSGFKIAMKDLE 999
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYK-SVQIDININPRLP 501
IRG G + G Q G + VG DL+ +ML ++++ + I Y+ ID++++ +P
Sbjct: 1000 IRGAGNVLGNSQHGHMAAVGYDLYCKMLNQAVNNLKG---IKNEYEFETTIDVDVDAYIP 1056
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
+ YI +++ AA +++ L + L +YG P + LL ++ A
Sbjct: 1057 ATYIKSEYQKLDIYKRI--AALENMDELSDMRDELSDRYGSVPSCADNLLMIALIKSKAH 1114
Query: 562 DIGITKI 568
+G+ +I
Sbjct: 1115 KLGMIEI 1121
>gi|379724734|ref|YP_005316865.1| hypothetical protein PM3016_7139 [Paenibacillus mucilaginosus 3016]
gi|378573406|gb|AFC33716.1| Mfd [Paenibacillus mucilaginosus 3016]
Length = 1174
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 225/556 (40%), Positives = 341/556 (61%), Gaps = 15/556 (2%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI---A 80
E K P+ + KL T W R K+K + ++Q + DL++LY R Q Y N
Sbjct: 548 EGKEPK-IYKLGGTD-WNRVKSKARASVQDIADDLIKLYAER--QATVGYAFNGDSNYQQ 603
Query: 81 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 140
EF FPYE T DQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F GK
Sbjct: 604 EFEGMFPYEETTDQLRAIEEIKKDM-EKPRPMDRLLCGDVGYGKTEVAIRAAFKAAIDGK 662
Query: 141 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 200
Q VL PT +LA+QH++ ERFS YP + +LSRF+SK E+ + + +K G +++++G
Sbjct: 663 QVAVLVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRSKKEQTDTMKGVKAGTVDVVIG 721
Query: 201 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 260
TH LL V + +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++ G
Sbjct: 722 THRLLSKDVQFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSMLG 781
Query: 261 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 320
RD S+I TPP R P++T++ +S V AI+ EL R GQV+Y+ R++G+ + + +
Sbjct: 782 VRDLSVIETPPENRFPVQTYVVEYSTNLVREAIERELAREGQVYYLYNRVQGITQMAEQI 841
Query: 321 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 380
P + +AHGQ ++LE+T+ F G +L+ T+I+E+G+DI N NT++V D
Sbjct: 842 TALVPEARVTVAHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLVVHDAD 901
Query: 381 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKD 440
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D
Sbjct: 902 KMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRD 961
Query: 441 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISVPYKSVQIDINI 496
+ IRG G + G +Q+G + +VG DL+ +ML E +SK + V S Q+DI +
Sbjct: 962 LSIRGAGNLLGAEQSGFIASVGFDLYSQMLGEEISKRKKEMGGEAVQETKAWSTQLDIQL 1021
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
+ +P +YI +E+ + A Q + + + L ++G P ++ LL +
Sbjct: 1022 DAYIPGDYIYDSVQKIEIYKKV--AGIQTLEEAAELHDELVDRFGDLPEAVHNLLLAARL 1079
Query: 557 RRMAADIGITKIYASG 572
+ A I I G
Sbjct: 1080 KVYGAQYAIETISQKG 1095
>gi|424835858|ref|ZP_18260517.1| transcription-repair coupling factor [Clostridium sporogenes PA 3679]
gi|365977728|gb|EHN13826.1| transcription-repair coupling factor [Clostridium sporogenes PA 3679]
Length = 1168
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/614 (36%), Positives = 373/614 (60%), Gaps = 26/614 (4%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K+P+ ++KL ++ W + K K K +I+++ DL++LY R K Y + +
Sbjct: 559 SEGKKPK-VNKLG-SSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGYKYSDDTVWQKQ 616
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F +FPYE TPDQ A D++RD+ E PMDRL+CGDVG+GKTEVA+RA F V GKQ
Sbjct: 617 FEEEFPYEETPDQVLAIEDIKRDM-ESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQ 675
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ +RFS +P + V ++SRF++ +E+ + IK G+++I++GT
Sbjct: 676 VAFLVPTTILAQQHYNNFKQRFSDFP-VTVDVISRFRTLSEQRATIKSIKEGNVDILIGT 734
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + + +LGLL++DEEQRFGVK KEK+ + K +VDVLTLSATPIPRTL+++L G
Sbjct: 735 HRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGV 794
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP ER P++T++ ++ + + +I E+ RGGQ+++V R++ + E ++
Sbjct: 795 RDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVYNRVESIHEMASYIS 854
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P + IAHGQ ++LE + F + IL+ T I+E+G+DI+N NT+I+ D +
Sbjct: 855 KLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILVATTIIETGMDIKNVNTMIIYDADK 914
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A+++ ELG GF++A KD+
Sbjct: 915 MGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALKDL 974
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDININ 497
IRG G + G Q G + ++G DL+ ML +++ +D+ V +++ I+
Sbjct: 975 EIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPV------ETSVELKID 1028
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+P+ YI +E+ + ++ + M E L ++ P S+ L+ Y+R
Sbjct: 1029 AYIPNTYIKDETQKIEVYKKIASIDSKEEF--MDIEEELEDRFSDIPISVYNLMNISYIR 1086
Query: 558 RMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV-----HRNSLTFEGDQ 608
+ + + +I V K+++ +K+ K+++D + EV + ++ +
Sbjct: 1087 SLGKKLDVEEIKEISNEVVFQFQDKSSLKEKIVKIIMDKYSKEVAFKLNEKPAIGYSIKN 1146
Query: 609 IKAELLLELPREQL 622
IK E +L + ++ L
Sbjct: 1147 IKKEQVLSVIKDFL 1160
>gi|83588954|ref|YP_428963.1| transcription-repair coupling factor [Moorella thermoacetica ATCC
39073]
gi|83571868|gb|ABC18420.1| transcription-repair coupling factor [Moorella thermoacetica ATCC
39073]
Length = 1183
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 228/549 (41%), Positives = 336/549 (61%), Gaps = 23/549 (4%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFPYEPTPDQKK 96
W + K++ + A+Q+M +L++LY R + P + P P EF FPY TPDQ +
Sbjct: 577 WNKVKSRVQEAVQEMAQELLDLYARR--EAIPGHAFGPDTPWQREFEEAFPYTETPDQLR 634
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A +V+ D+ E+ PMDRL+CGDVG+GKTEVA+RA F V G Q VL PT +LA+QH+
Sbjct: 635 AIAEVKADM-EKPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGMQVAVLVPTTILAQQHY 693
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ RF+ +P +K+ +LSRF S E++ ++ +K G ++I++GTH LL S V + NLGL
Sbjct: 694 ETFKARFAPFP-VKIAVLSRFCSPREQKVVVEALKRGEVDIVIGTHRLLSSDVNFKNLGL 752
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
+++DEEQRFGV KEK+ + SVDVLT++ATPIPRTL+++L G RD S+I TPP +R P
Sbjct: 753 VIIDEEQRFGVAHKEKLKQLRYSVDVLTMTATPIPRTLHMSLAGVRDMSMIETPPEDRFP 812
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T++ ++ E V AI+ ELDRGGQVF V R++ ++ +QQ P + I HGQ
Sbjct: 813 VQTYVVEYNPELVREAIRRELDRGGQVFIVHNRVQDIDRFAYHIQQLVPEARVGIGHGQM 872
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE M F G +L+ T IVE+GLDIQNANT+IV + FGLAQLYQLRGRVGR
Sbjct: 873 GEEELENVMLDFISGRYDVLVSTTIVENGLDIQNANTLIVDESDNFGLAQLYQLRGRVGR 932
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
++ A+AY Y +L + A +RLAA+ E G G+++A +D+ IRG G G +Q G
Sbjct: 933 TNRLAYAYFTYRPDKVLGEIAEKRLAAIREFTAFGSGYKIALRDLQIRGAGNFLGPEQHG 992
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPY------KSVQIDININPRLPSEYINHLEN 510
+ VG DL+ ++L E++ K+ E VP ++ I+++++ L YI
Sbjct: 993 HMVAVGFDLYCQLLEEAVRKLKEQRGEGVPRPALAEPQATPIELSVDTFLGDNYIPEATL 1052
Query: 511 PME----MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGIT 566
ME ++N + AA +DI M+ +YG P LL VR +A ++G+
Sbjct: 1053 KMELYHRLMNAGDLAAVEDIAAEME------DRYGPPPPEARNLLALTRVRILAREVGVI 1106
Query: 567 KIYASGKMV 575
+ + V
Sbjct: 1107 SVNQKNREV 1115
>gi|424755707|ref|ZP_18183568.1| transcription-repair coupling factor [Enterococcus faecalis R508]
gi|402408992|gb|EJV41438.1| transcription-repair coupling factor [Enterococcus faecalis R508]
Length = 1189
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 563 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 620
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 621 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 680 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 739 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 799 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 859 ELQALVPDARIAYAHGQMTEIQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 919 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 979 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1037
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1038 YIPGTYITDERQKIEIYKRIRQLENMDMY 1066
>gi|386727488|ref|YP_006193814.1| hypothetical protein B2K_36010 [Paenibacillus mucilaginosus K02]
gi|384094613|gb|AFH66049.1| Mfd [Paenibacillus mucilaginosus K02]
Length = 1174
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 225/556 (40%), Positives = 341/556 (61%), Gaps = 15/556 (2%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI---A 80
E K P+ + KL T W R K+K + ++Q + DL++LY R Q Y N
Sbjct: 548 EGKEPK-IYKLGGTD-WNRVKSKARASVQDIADDLIKLYAER--QATVGYAFNGDSNYQQ 603
Query: 81 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 140
EF FPYE T DQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F GK
Sbjct: 604 EFEGMFPYEETTDQLRAIEEIKKDM-EKPRPMDRLLCGDVGYGKTEVAIRAAFKAAIDGK 662
Query: 141 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 200
Q VL PT +LA+QH++ ERFS YP + +LSRF+SK E+ + + +K G +++++G
Sbjct: 663 QVAVLVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRSKKEQTDTMKGVKAGTVDVVIG 721
Query: 201 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 260
TH LL V + +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++ G
Sbjct: 722 THRLLSKDVQFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSMLG 781
Query: 261 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 320
RD S+I TPP R P++T++ +S V AI+ EL R GQV+Y+ R++G+ + + +
Sbjct: 782 VRDLSVIETPPENRFPVQTYVVEYSTNLVREAIERELAREGQVYYLYNRVQGITQMAEQI 841
Query: 321 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 380
P + +AHGQ ++LE+T+ F G +L+ T+I+E+G+DI N NT++V D
Sbjct: 842 TALVPEARVTVAHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLVVHDAD 901
Query: 381 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKD 440
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D
Sbjct: 902 KMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRD 961
Query: 441 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISVPYKSVQIDINI 496
+ IRG G + G +Q+G + +VG DL+ +ML E +SK + V S Q+DI +
Sbjct: 962 LSIRGAGNLLGAEQSGFIASVGFDLYSQMLGEEISKRKKEMGGEAVQETKAWSTQLDIQL 1021
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
+ +P +YI +E+ + A Q + + + L ++G P ++ LL +
Sbjct: 1022 DAYIPGDYIYDSVQKIEIYKKV--AGIQTLEEAAELHDELVDRFGDLPEAVHNLLLAARL 1079
Query: 557 RRMAADIGITKIYASG 572
+ A I I G
Sbjct: 1080 KVYGAQYAIETISQKG 1095
>gi|325288390|ref|YP_004264571.1| transcription-repair coupling factor [Syntrophobotulus glycolicus DSM
8271]
gi|324963791|gb|ADY54570.1| transcription-repair coupling factor [Syntrophobotulus glycolicus DSM
8271]
Length = 1182
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/556 (39%), Positives = 346/556 (62%), Gaps = 8/556 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEF 82
+ R L+KL + W + K++ + A+++M +DL+ELY R K + N EF
Sbjct: 560 DADRAPKLNKL-NGNEWNKAKSRVRSAVKEMAIDLIELYAKRESSKGYVFSADNHWQKEF 618
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
+FPYE T DQ ++ ++++D+ + + MDRL+CGDVG+GKTEVA+RA F V+ GKQ
Sbjct: 619 EDKFPYEETADQLQSIQEIKKDMMKSKV-MDRLLCGDVGYGKTEVAMRAAFKAVADGKQV 677
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
+L PT +LA+QH+ ERF YP +K+ ++SRF++ E+++ + +K G ++II+GTH
Sbjct: 678 AILVPTTILAQQHYTTFQERFMDYP-VKIEMISRFRTAKEQKQIIRGLKDGTIDIIIGTH 736
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
L+ + + +LGLLVVDEEQRFGV KEKI + K +VDVLTLSATPIPRTL ++L G R
Sbjct: 737 KLVSEGIDFKDLGLLVVDEEQRFGVTHKEKIKALKTNVDVLTLSATPIPRTLQMSLVGLR 796
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+ISTPP +R P++T ++ F+ + V A++ E+ RGGQVFYV RI+ L+ + L+
Sbjct: 797 DMSVISTPPDDRYPVQTFVAEFNPDMVRDAVRREIHRGGQVFYVHNRIESLDRVLRMLKS 856
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P + HGQ QLE M F + ILICT I+E+GLD+ N NT+IV + +F
Sbjct: 857 LVPEAKCGVVHGQMNETQLENEMISFLEKEKDILICTTIIETGLDMANVNTLIVDEADRF 916
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR++++A+AY Y +L+++A +RL+ + E E G GF++A +D+
Sbjct: 917 GLSQLYQLRGRVGRSNRKAYAYFLYQPSKILTEEAEKRLSTIREFTEFGSGFKVAMRDLE 976
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G++ G +Q G + VG +L+ ML E++ ++ S IDI I LP
Sbjct: 977 IRGAGSLIGGEQHGHLAAVGFNLYVRMLKEAIQELRGEETEEQMEPS--IDIQIKALLPD 1034
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
EYI + + + ++ + + + L ++G P +E L++ + +R A
Sbjct: 1035 EYIIDKQAKATLYQRMIGISGEE--EMSEMLDELVDRFGTPPQEVENLMEIIRIRYRAKT 1092
Query: 563 IGITKIYASGKMVGMK 578
+ I +I S + + ++
Sbjct: 1093 LKIDQIVQSRQEITLR 1108
>gi|422723127|ref|ZP_16779665.1| transcription-repair coupling factor [Enterococcus faecalis TX2137]
gi|424671697|ref|ZP_18108688.1| transcription-repair coupling factor [Enterococcus faecalis 599]
gi|315026785|gb|EFT38717.1| transcription-repair coupling factor [Enterococcus faecalis TX2137]
gi|402357965|gb|EJU92653.1| transcription-repair coupling factor [Enterococcus faecalis 599]
Length = 1189
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 563 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 620
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 621 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 680 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 739 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 799 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 859 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 919 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 979 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1037
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1038 YIPGTYITDERQKIEIYKRIRQLENMDMY 1066
>gi|150024302|ref|YP_001295128.1| transcription-repair coupling factor [Flavobacterium psychrophilum
JIP02/86]
gi|149770843|emb|CAL42308.1| Transcription-repair coupling factor [Flavobacterium psychrophilum
JIP02/86]
Length = 1117
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/561 (39%), Positives = 338/561 (60%), Gaps = 18/561 (3%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQF 86
P + KL + AW+ K K K ++ + +L++LY R K + P + E + F
Sbjct: 498 PPKIYKLG-SGAWKALKQKTKARVKHIAFNLIQLYAKRRLDKGFAFAPDSYLQHELESSF 556
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
YE TPDQ K+ +V+ D+ E + PMDRL+CGDVGFGKTEVA+RA F V GKQ +L
Sbjct: 557 IYEDTPDQLKSTQEVKADM-ESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAILV 615
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA QH+ +ER P + + L+RF++ +K E L ++ G ++I++GTH L+
Sbjct: 616 PTTILAYQHYRTFTERLKDMP-VTINYLNRFKTAKQKAETLKDLEAGKVDIVIGTHQLVS 674
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
V++ +LGLL+VDEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L RD S+
Sbjct: 675 KNVIFKDLGLLIVDEEQKFGVNVKDKLKTITQNVDTLTLTATPIPRTLQFSLMAARDLSV 734
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPPP R PI+TH+ F++E + AI +E++RGGQVF++ RI+ ++E +Q+ P
Sbjct: 735 ITTPPPNRYPIETHVVGFNEETIRDAISFEIERGGQVFFINNRIENIKEVAGMIQRLVPD 794
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+ I HGQ ++LEE M F +G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 795 AKVGIGHGQMDGKKLEELMLAFMEGEFDVLVATTIIESGLDVPNANTIFINNANNFGLSD 854
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+Q+RGRVGR++K+A Y P S++++ A +R+ ALE+ ELG G +A KD+ IRG
Sbjct: 855 LHQMRGRVGRSNKKAFCYFICPPYSVMTEDARKRIQALEQFSELGSGLNIAMKDLEIRGA 914
Query: 447 GTIFGEQQTGDVGNVGVDLFFEML-----------FESLSKVDEHCVISVPYKSVQIDIN 495
G + G +Q+G + +G D + +++ F+ L + D V K +QID +
Sbjct: 915 GDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYENDNETVEKEYVKDLQIDSD 974
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
P +YIN + + + N E++ L+++ + L ++G P LL L
Sbjct: 975 FELLFPDDYINSVTERLALYNALAIIKEEN--GLLEYEKQLIDRFGPLPKQAIALLNSLR 1032
Query: 556 VRRMAADIGITK-IYASGKMV 575
++ +A IG+ K I GKMV
Sbjct: 1033 IKWIATQIGVEKLILKQGKMV 1053
>gi|312901071|ref|ZP_07760360.1| transcription-repair coupling factor [Enterococcus faecalis TX0470]
gi|311291817|gb|EFQ70373.1| transcription-repair coupling factor [Enterococcus faecalis TX0470]
Length = 1189
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/533 (40%), Positives = 337/533 (63%), Gaps = 8/533 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 563 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 620
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 621 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 680 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 739 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 799 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 859 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 919 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 979 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1037
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
+P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1038 YIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|422726415|ref|ZP_16782862.1| transcription-repair coupling factor [Enterococcus faecalis TX0312]
gi|315158594|gb|EFU02611.1| transcription-repair coupling factor [Enterococcus faecalis TX0312]
Length = 1189
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 563 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 620
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 621 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 680 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 739 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 799 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 859 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 919 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 979 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1037
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1038 YIPGTYITDERQKIEIYKRIRQLENMDMY 1066
>gi|308271395|emb|CBX28003.1| hypothetical protein N47_G33270 [uncultured Desulfobacterium sp.]
Length = 1171
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/535 (41%), Positives = 328/535 (61%), Gaps = 15/535 (2%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHR-----LKQKRPPYPKNPAIAEFAAQFPYEPTPD 93
AW+R K + K + +K+ +L++LY R K+P + +F A+F YE TPD
Sbjct: 576 AWDRVKERAKKSAEKIAGELLKLYATRKVNEGFAHKKP----DSYFKDFEAEFSYEETPD 631
Query: 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 153
Q A DV D+ E TPMDRL+CGDVG+GKTEVALRA F ++ KQ VL PT VLA+
Sbjct: 632 QLSAIDDVMSDM-ENNTPMDRLVCGDVGYGKTEVALRASFLAINCAKQVAVLVPTTVLAE 690
Query: 154 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNN 213
QHF RF KYP + + LSRF+S E++ + I G +I++GTH LL V++ +
Sbjct: 691 QHFSTFKARFEKYP-VNIECLSRFRSIKEQKRIISDISSGKADIVIGTHRLLQKDVIFKD 749
Query: 214 LGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE 273
LGL+V+DEE RFGVK KEK+ + +VDVL L+ATPIPRTL+++LTG RD S+ISTPP
Sbjct: 750 LGLIVLDEEHRFGVKHKEKLKKLRNNVDVLALTATPIPRTLHMSLTGIRDISVISTPPEH 809
Query: 274 RLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAH 333
R I T++S F + + A++ EL R GQ+++V I +++ + L + P + I I H
Sbjct: 810 RQSIITYVSEFDEALIAEAVRKELARKGQIYFVHNNIFTIDKIANKLHELIPEIKIGIGH 869
Query: 334 GQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGR 393
G+ +LE M KF I +L+CT I+ESGLDI +ANTII+ +FGLAQ+YQLRGR
Sbjct: 870 GRLSENELESVMLKFVNKDIDMLVCTTIIESGLDIPSANTIIINRADRFGLAQIYQLRGR 929
Query: 394 VGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQ 453
VGR+D++A+AYLF P S+L A +RL L E +LG GFQ+A D+ IRG GTI G
Sbjct: 930 VGRSDEQAYAYLFIPKDSILGKDAQKRLKVLMEHSDLGSGFQIAMSDLRIRGGGTILGAS 989
Query: 454 QTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
Q+G + +G ++F +++ E++ ++ V + +I+I+++ L Y++ ++ +
Sbjct: 990 QSGHIAAIGYEMFLKLMEEAVCELKGEPVNKII--EPEINISMSAYLSELYVSDIDQRLT 1047
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+ E ++ + F L ++G P LL K+ R +A GI ++
Sbjct: 1048 AYRRLSRMTE--LYEVSDFKAELEDRFGPLPKEASNLLVKIMFRILAQKSGIQRL 1100
>gi|229546913|ref|ZP_04435638.1| transcription-repair coupling factor [Enterococcus faecalis TX1322]
gi|312952657|ref|ZP_07771521.1| transcription-repair coupling factor [Enterococcus faecalis TX0102]
gi|422691668|ref|ZP_16749697.1| transcription-repair coupling factor [Enterococcus faecalis TX0031]
gi|422706366|ref|ZP_16764067.1| transcription-repair coupling factor [Enterococcus faecalis TX0043]
gi|229307841|gb|EEN73828.1| transcription-repair coupling factor [Enterococcus faecalis TX1322]
gi|310629445|gb|EFQ12728.1| transcription-repair coupling factor [Enterococcus faecalis TX0102]
gi|315153559|gb|EFT97575.1| transcription-repair coupling factor [Enterococcus faecalis TX0031]
gi|315156261|gb|EFU00278.1| transcription-repair coupling factor [Enterococcus faecalis TX0043]
Length = 1189
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 563 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 620
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 621 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 680 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 739 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 799 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 859 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 919 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 979 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1037
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1038 YIPGTYITDERQKIEIYKRIRQLENMDMY 1066
>gi|110803113|ref|YP_699740.1| transcription-repair coupling factor [Clostridium perfringens SM101]
gi|110683614|gb|ABG86984.1| transcription-repair coupling factor [Clostridium perfringens SM101]
Length = 1162
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/572 (38%), Positives = 356/572 (62%), Gaps = 12/572 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYE 89
+SKL W++ K K + +I + DL++LY R K + K+ +F +FPYE
Sbjct: 560 ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQWQKQFEDEFPYE 618
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V GKQ L PT
Sbjct: 619 ETPDQLAAIEDIKSDM-ESNKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTT 677
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH+ + RF+ +P I + ++SRF++K ++ E L +K G+++I++GTH L+ +
Sbjct: 678 ILAEQHYKNMKRRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDI 736
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++LTG RD S+I T
Sbjct: 737 QFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIET 796
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP R PI+T++ + + + AI E++RGGQV++V R++ ++E +++Q+ P
Sbjct: 797 PPENRYPIQTYVVEQNDQLIRDAILREINRGGQVYFVHNRVESIQEVANYIQELVPECKA 856
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+ HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D + GL+QLYQ
Sbjct: 857 TVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQLYQ 916
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A +D+ IRG G +
Sbjct: 917 LRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNM 976
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++ +PS YI
Sbjct: 977 MGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDAFIPSSYIKDEI 1034
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
+E+ + ++ + ++ E L ++ P ++ L+ Y++ A + I +I
Sbjct: 1035 QKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKSKAKLLNIEEIK 1092
Query: 570 ASGK----MVGMKTNMNKKVFKMMIDSMTSEV 597
+ + + +K++FK++++ ++
Sbjct: 1093 EKNEDIIFIFESRERTDKRIFKILLEEYKDDI 1124
>gi|337751796|ref|YP_004645958.1| hypothetical protein KNP414_07598 [Paenibacillus mucilaginosus
KNP414]
gi|336302985|gb|AEI46088.1| Mfd [Paenibacillus mucilaginosus KNP414]
Length = 1174
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 225/556 (40%), Positives = 341/556 (61%), Gaps = 15/556 (2%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI---A 80
E K P+ + KL T W R K+K + ++Q + DL++LY R Q Y N
Sbjct: 548 EGKEPK-IYKLGGTD-WNRVKSKARASVQDIADDLIKLYAER--QATVGYAFNGDSNYQQ 603
Query: 81 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 140
EF FPYE T DQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F GK
Sbjct: 604 EFEGMFPYEETTDQLRAIEEIKKDM-EKPRPMDRLLCGDVGYGKTEVAIRAAFKAAIDGK 662
Query: 141 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 200
Q VL PT +LA+QH++ ERFS YP + +LSRF+SK E+ + + +K G +++++G
Sbjct: 663 QVAVLVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRSKKEQTDTMKGVKAGTVDVVIG 721
Query: 201 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 260
TH LL V + +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++ G
Sbjct: 722 THRLLSKDVQFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSMLG 781
Query: 261 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 320
RD S+I TPP R P++T++ +S V AI+ EL R GQV+Y+ R++G+ + + +
Sbjct: 782 VRDLSVIETPPENRFPVQTYVVEYSTNLVREAIERELAREGQVYYLYNRVQGITQMAEQI 841
Query: 321 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 380
P + +AHGQ ++LE+T+ F G +L+ T+I+E+G+DI N NT++V D
Sbjct: 842 TALVPEARVTVAHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLVVHDAD 901
Query: 381 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKD 440
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D
Sbjct: 902 KMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRD 961
Query: 441 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISVPYKSVQIDINI 496
+ IRG G + G +Q+G + +VG DL+ +ML E +SK + V S Q+DI +
Sbjct: 962 LSIRGAGNLLGAEQSGFIASVGFDLYSQMLGEEISKRKKEMGGEAVQETKAWSTQLDIQL 1021
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
+ +P +YI +E+ + A Q + + + L ++G P ++ LL +
Sbjct: 1022 DAYIPGDYIYDSVQKIEIYKKV--AGIQTLEEAAELHDELVDRFGDLPEAVHNLLLAARL 1079
Query: 557 RRMAADIGITKIYASG 572
+ A I I G
Sbjct: 1080 KVYGAQYAIETISQKG 1095
>gi|386320880|ref|YP_006017042.1| Transcription-repair coupling factor (superfamily II helicase)
[Riemerella anatipestifer RA-GD]
gi|325335423|gb|ADZ11697.1| Transcription-repair coupling factor (superfamily II helicase)
[Riemerella anatipestifer RA-GD]
Length = 1097
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/554 (40%), Positives = 335/554 (60%), Gaps = 21/554 (3%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPY 88
TLSK+ + +W+ K K K ++++ DL++LY R K Y P E A F Y
Sbjct: 498 TLSKIG-SPSWKNLKNKTKAKVKQIAFDLIKLYAKRKTAKGFAYTPDTYLQNELEASFLY 556
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
E TPDQ+KA LDV+RD+ E +T MDRL+CGDVGFGKTEVA+RA F + GKQ VL PT
Sbjct: 557 EDTPDQEKATLDVKRDM-EADTIMDRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVLVPT 615
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
+LA QH+ +ER +P + + L+RF++ +K E L+ + G ++II+GTH L +
Sbjct: 616 TILAFQHYRSFAERLKDFP-VNISYLNRFRTAKQKRETLEKLAEGKIDIIIGTHQLASDK 674
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
V + +LGLL++DEE +FGV K+K+ + K ++D LTL+ATPIPRTL +L RD S+I
Sbjct: 675 VKFKDLGLLIIDEEHKFGVSVKDKLKTLKANIDTLTLTATPIPRTLQFSLMAARDLSVIK 734
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
TPPP R P++T L F +E + AI YEL R GQV+++ RI L++ +Q+ P
Sbjct: 735 TPPPNRQPVETQLIGFDEEIIRDAISYELQRDGQVYFINNRIDNLKDIAGMIQRLVPDAR 794
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+ HGQ +QLEE + F +G +L+ T IVESG+D+ NANTI + D Q+FG+A ++
Sbjct: 795 VITGHGQMDGKQLEENILDFMEGRYDVLVSTTIVESGVDVPNANTIFINDAQRFGMADVH 854
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ+A KD+ IRG G
Sbjct: 855 QMRGRVGRSNRKAFCYLITPPFDMVTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGD 914
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY-------------KSVQIDIN 495
+ G +Q+G + +G + + +++ ESL ++ + K V ID +
Sbjct: 915 LLGAEQSGFINEMGFETYQKIMQESLEELQNDAEFESLFENEADRKKLFKSSKDVNIDTD 974
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+ LP Y++ E E +N +K AE + L +F L ++G P LLK +
Sbjct: 975 LELMLPDSYVSSTE---ERLNLYQKLAEINNKEELKRFEAELEDRFGSLPEEAINLLKSV 1031
Query: 555 YVRRMAADIGITKI 568
++ +AA IG KI
Sbjct: 1032 ELKWLAAAIGFEKI 1045
>gi|442315628|ref|YP_007356931.1| Transcription-repair coupling factor (superfamily II helicase)
[Riemerella anatipestifer RA-CH-2]
gi|441484551|gb|AGC41237.1| Transcription-repair coupling factor (superfamily II helicase)
[Riemerella anatipestifer RA-CH-2]
Length = 1119
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/554 (40%), Positives = 335/554 (60%), Gaps = 21/554 (3%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPY 88
TLSK+ + +W+ K K K ++++ DL++LY R K Y P E A F Y
Sbjct: 498 TLSKIG-SPSWKNLKNKTKAKVKQIAFDLIKLYAKRKTAKGFAYTPDTYLQNELEASFLY 556
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
E TPDQ+KA LDV+RD+ E +T MDRL+CGDVGFGKTEVA+RA F + GKQ VL PT
Sbjct: 557 EDTPDQEKATLDVKRDM-EADTIMDRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVLVPT 615
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
+LA QH+ +ER +P + + L+RF++ +K E L+ + G ++II+GTH L +
Sbjct: 616 TILAFQHYRSFAERLKDFP-VNISYLNRFRTAKQKRETLEKLAEGKIDIIIGTHQLASDK 674
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
V + +LGLL++DEE +FGV K+K+ + K ++D LTL+ATPIPRTL +L RD S+I
Sbjct: 675 VKFKDLGLLIIDEEHKFGVSVKDKLKTLKANIDTLTLTATPIPRTLQFSLMAARDLSVIK 734
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
TPPP R P++T L F +E + AI YEL R GQV+++ RI L++ +Q+ P
Sbjct: 735 TPPPNRQPVETQLIGFDEEIIRDAISYELQRDGQVYFINNRIDNLKDIAGMIQRLVPDAR 794
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+ HGQ +QLEE + F +G +L+ T IVESG+D+ NANTI + D Q+FG+A ++
Sbjct: 795 VITGHGQMDGKQLEENILDFMEGRYDVLVSTTIVESGVDVPNANTIFINDAQRFGMADVH 854
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ+A KD+ IRG G
Sbjct: 855 QMRGRVGRSNRKAFCYLITPPFDMVTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGD 914
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY-------------KSVQIDIN 495
+ G +Q+G + +G + + +++ ESL ++ + K V ID +
Sbjct: 915 LLGAEQSGFINEMGFETYQKIMQESLEELQNDAEFESLFENEADRKKLFKSSKDVNIDTD 974
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+ LP Y++ E E +N +K AE + L +F L ++G P LLK +
Sbjct: 975 LELMLPDSYVSSTE---ERLNLYQKLAEINNKEELKRFEAELEDRFGSLPEEAINLLKSV 1031
Query: 555 YVRRMAADIGITKI 568
++ +AA IG KI
Sbjct: 1032 ELKWLAAAIGFEKI 1045
>gi|3511015|gb|AAD03810.1| transcription-repair coupling factor [Lactobacillus sakei]
Length = 1045
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/492 (42%), Positives = 323/492 (65%), Gaps = 7/492 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEF 82
E+K P+ ++KL W++ K+K I+ + DL+ELY R +K +PK+ + A+F
Sbjct: 556 ESKTPK-INKLGGA-EWQKTKSKVSAKIEDIADDLIELYAQREAEKGYAFPKDDQLQADF 613
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
QF Y T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F V+AGKQ
Sbjct: 614 ENQFAYPETDDQLRSTAEIKHDM-EKVRPMDRLLVGDVGFGKTEVALRAAFKAVAAGKQV 672
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QH++ + RF+ +P +++GLLSRF+++ E L ++ G ++I++GTH
Sbjct: 673 AFLVPTTILAQQHYENMLARFADFP-VELGLLSRFKTRKEVTATLKGLEKGQVDIVIGTH 731
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL VV+ +LGLL+VDEEQRFGVK KE++ K VDVLTL+ATPIPRTL++++ G R
Sbjct: 732 RLLSKDVVFKDLGLLIVDEEQRFGVKHKERLKQLKAQVDVLTLTATPIPRTLHMSMLGVR 791
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R PI+T++ + + AI+ EL+R GQVFY+ R+ +E+ +D +Q
Sbjct: 792 DLSVIETPPTNRYPIQTYVMEQNAGAMREAIERELERNGQVFYLHNRVSDIEQTVDEIQA 851
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P + AHGQ QLE + F QG +L+ T I+E+G+D+ N NT+IV+D +
Sbjct: 852 LVPEATVGYAHGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNVNTMIVEDADHY 911
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGR+GR+ + A+ Y Y +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 GLSQLYQLRGRIGRSSRVAYGYFMYKPDKVLTEVSEKRLQAIKDFTELGSGFKIAMRDLS 971
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G + G+QQ G + +VG DL+ +ML E+++K V + + +ID+ + LP
Sbjct: 972 IRGAGNLLGKQQHGFIDSVGFDLYSQMLSEAVAKKQGKKVAA--KTNAEIDLKLEAYLPD 1029
Query: 503 EYINHLENPMEM 514
+YIN +E+
Sbjct: 1030 DYINDQRQKIEI 1041
>gi|402310378|ref|ZP_10829344.1| transcription-repair coupling factor [Eubacterium sp. AS15]
gi|400368830|gb|EJP21837.1| transcription-repair coupling factor [Eubacterium sp. AS15]
Length = 1128
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 226/561 (40%), Positives = 355/561 (63%), Gaps = 20/561 (3%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQFPY 88
+L+KL ++ W+++K K K A++++ L++LY R QK + K+ EF + F +
Sbjct: 556 SLTKLG-SSQWKKQKAKAKKAVEEIARYLVDLYAQRENQKGYAFSKDTVWQREFESLFAF 614
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
E T DQ ++ +V++D+ E PMDRL+CGDVG+GKTEVA+R IF KQ L PT
Sbjct: 615 EETQDQIRSIKEVKKDM-ENIKPMDRLLCGDVGYGKTEVAIRGIFKACMDSKQVAFLVPT 673
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
+LA+QH+ VSERF +P +KV +LSRF+++ E+ E L+ +K G +++I+GTH +L
Sbjct: 674 TILAQQHYKTVSERFENFP-LKVEVLSRFKTRKEQNEILEKLKLGEVDVIIGTHRILSKD 732
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
VV+ +LGLLV+DEEQRFGVK KEKI S K ++DVLTL+ATPIPRTL ++L+G RD S++
Sbjct: 733 VVFKDLGLLVIDEEQRFGVKDKEKIKSLKTNIDVLTLTATPIPRTLNMSLSGIRDMSVLE 792
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
PP +RL + T+++ + ++ AI+ E+ RGGQVF+V ++ +++ +++ P V
Sbjct: 793 EPPNDRLSVITYVTEAREGIIMDAIEREISRGGQVFFVYNSVEDIDKMATNIKKLVPNVR 852
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+A+AHGQ LE+ M + + +L+CT I+E+G+DI NANTIIV + + GL+QLY
Sbjct: 853 LAVAHGQMQPTVLEDIMMDYLEKKYDLLLCTTIIETGMDISNANTIIVYNADKMGLSQLY 912
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
QLRGRVGR+ ++A+AYL Y +L++ A +RL A+ + E G GF++A D+ +RG G
Sbjct: 913 QLRGRVGRSSRQAYAYLMYEKDKVLTEIAQKRLKAIRDFTEFGSGFKVAMMDLELRGSGN 972
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKV-----DEHCVISVPYKSVQIDININPRLPSE 503
+ GE Q+G + VG DL+ +ML +S +++ DE + V I +N +P
Sbjct: 973 LLGETQSGHIEEVGYDLYIKMLNDSFNRLKGNIQDEKVMTEVY-------ITVNAYIPDT 1025
Query: 504 YINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
YI ME+ + A ++E+D + + E ++ P+ +E LLK +R
Sbjct: 1026 YIEDEMQKMEIYKKIASISSEEDYFDVQAEIED---RFSDIPFQVENLLKIATIRSYGEK 1082
Query: 563 IGITKIYASGKMVGMKTNMNK 583
IGI KI K+V +++ +K
Sbjct: 1083 IGIEKITQKNKIVIYESSKDK 1103
>gi|355574949|ref|ZP_09044585.1| transcription-repair coupling factor [Olsenella sp. oral taxon 809
str. F0356]
gi|354818425|gb|EHF02917.1| transcription-repair coupling factor [Olsenella sp. oral taxon 809
str. F0356]
Length = 1154
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 225/551 (40%), Positives = 345/551 (62%), Gaps = 11/551 (1%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQF 86
PR L++L +T W R K + + +K+ DL++LY R + + P PA + A F
Sbjct: 555 PR-LTRL-NTADWSRATGKARRSAKKLAFDLVDLYTRRSAVRGHAFAPDGPAQQDMEASF 612
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
PY+ TPDQ A D++ D+ E PMDRL+CGDVGFGKTEVALRA F +Q MVL
Sbjct: 613 PYDVTPDQASAIADIKADM-ESTQPMDRLLCGDVGFGKTEVALRAAFKCCQDDRQVMVLC 671
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA+QHF+ RFS + D+ V +LSRF + A++ + L+ G +++++GTH LL
Sbjct: 672 PTTILAQQHFETFFARFSPF-DLSVRVLSRFVTPAQQRQALEGFAEGTVDVLIGTHRLLS 730
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
+ V ++LGL+++DEEQRFGV+ KE++ + + VDVLTLSATPIPRT+ +A++G RD SL
Sbjct: 731 ADVNPHDLGLVIIDEEQRFGVQHKEQLKNMREQVDVLTLSATPIPRTMQMAMSGVRDMSL 790
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I TPPP RLP+K + + + V AI+ EL+R GQV+YV R+ +E+ + +Q+A P
Sbjct: 791 ILTPPPGRLPVKVTVGEWDPDVVSDAIRGELERKGQVYYVSNRVTTIEDAVARVQEAAPE 850
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+ +AHGQ + Q+E+ M +F++ I +L+ T I+ESG+D + NT+I++D Q+ GLAQ
Sbjct: 851 ARVGVAHGQMSAAQVEDVMMEFSEREIDVLVATTIIESGIDNPHTNTLIIEDSQRLGLAQ 910
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
LYQL+GRVGR +A+AY +P + L+ +A +RL A+ E ++LG G ++A +D+ IRG
Sbjct: 911 LYQLKGRVGRGHVQAYAYFMFPGEMPLTPEATDRLTAINEYQDLGSGMRIAMRDLEIRGA 970
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
G++ G +Q G++ +VG DLF +ML E++S+ V V I++ + L EY+
Sbjct: 971 GSLMGGEQHGNLSSVGFDLFTQMLGEAVSEARGEAA-DVSQAEVNINLPADFYLAEEYLP 1029
Query: 507 HLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
++ + AAE D+ L Q L +G P + L + VR +G+
Sbjct: 1030 EVDRRVLAYRRLAVAAELADVDALQQ---ELEEDHGALPLAGRNLFDRARVRIRCQRLGV 1086
Query: 566 TKI-YASGKMV 575
T I A+G++
Sbjct: 1087 TSISLANGRIT 1097
>gi|29374898|ref|NP_814051.1| transcription-repair coupling factor [Enterococcus faecalis V583]
gi|227555903|ref|ZP_03985950.1| transcription-repair coupling factor [Enterococcus faecalis HH22]
gi|422712941|ref|ZP_16769701.1| transcription-repair coupling factor [Enterococcus faecalis TX0309A]
gi|422718241|ref|ZP_16774912.1| transcription-repair coupling factor [Enterococcus faecalis TX0309B]
gi|29342356|gb|AAO80122.1| transcription-repair coupling factor [Enterococcus faecalis V583]
gi|227174960|gb|EEI55932.1| transcription-repair coupling factor [Enterococcus faecalis HH22]
gi|315573564|gb|EFU85755.1| transcription-repair coupling factor [Enterococcus faecalis TX0309B]
gi|315582088|gb|EFU94279.1| transcription-repair coupling factor [Enterococcus faecalis TX0309A]
Length = 1189
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 563 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 620
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 621 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 680 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 739 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 799 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 859 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 919 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 979 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1037
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1038 YIPGTYITDERQKIEIYKRIRQLENMDMY 1066
>gi|163786687|ref|ZP_02181135.1| transcription-repair coupling factor [Flavobacteriales bacterium
ALC-1]
gi|159878547|gb|EDP72603.1| transcription-repair coupling factor [Flavobacteriales bacterium
ALC-1]
Length = 1096
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/552 (39%), Positives = 335/552 (60%), Gaps = 15/552 (2%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQ 85
+P + KL + AW+ K K K ++++ +L++LY R +K Y P + E A
Sbjct: 478 KPPKIYKLG-SKAWKTLKQKTKSRVKEIAFNLIKLYAKRKLKKGFQYAPDSYMQHELEAS 536
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ + D++ D+ E E PMDRL+CGDVGFGKTEVA+RA F V GKQ VL
Sbjct: 537 FVYEDTPDQITSTADIKADM-ESERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVL 595
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA QH ER +P + V ++RF++ EK E L+ ++ G ++II+GTH L
Sbjct: 596 VPTTILAYQHSRTFKERLKDFP-VTVDYVNRFRTAKEKRETLEGLEKGRVDIIIGTHQLA 654
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
V + +LGLL+VDEEQ+FGV KEK+ + K +VDVLTL+ATPIPRTL +L RD S
Sbjct: 655 NKNVKFKDLGLLIVDEEQKFGVAVKEKLKTIKENVDVLTLTATPIPRTLQFSLMAARDLS 714
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+T PP R PI++H+ F++E + A+ YE+ RGGQVF++ RI+ ++E +Q+ P
Sbjct: 715 VITTAPPNRYPIESHVIRFAEETIRDAVSYEIQRGGQVFFIHNRIENIKEVAGMIQRLVP 774
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
I I HGQ ++LE M F G +L+ T IVESGLD+ NANTI + + FGL+
Sbjct: 775 DAKIGIGHGQLDGKKLEHLMLSFMNGEFDVLVSTTIVESGLDVPNANTIFINNANNFGLS 834
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P+ S ++ A +R+ ALE+ ELG GF +A KD+ IRG
Sbjct: 835 DLHQMRGRVGRSNKKAFCYFITPEYSAMTTDARKRITALEQFTELGSGFNIAMKDLEIRG 894
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV---------PYKSVQIDINI 496
G + G +Q+G + ++G D + ++L E++ ++ E + K + ID +
Sbjct: 895 AGDLLGGEQSGFINDIGFDTYQKILNEAIEELKESEFADLYKDDGKPKQYVKDITIDTDF 954
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
P +Y+N++ + + + ++D + + TE + R +G+ P + LL + +
Sbjct: 955 ELLFPDDYVNNITERLNLYTKLNAIKDEDALAIFE-TEIIDR-FGELPTQVSDLLDSVRL 1012
Query: 557 RRMAADIGITKI 568
+ +A IGI K+
Sbjct: 1013 KWIATKIGIEKL 1024
>gi|89100521|ref|ZP_01173382.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911]
gi|89084787|gb|EAR63927.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911]
Length = 1179
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/495 (42%), Positives = 323/495 (65%), Gaps = 10/495 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ + KL W+R K K + ++Q + DL++LY R K + P E
Sbjct: 559 SEGKEPK-IYKLGGND-WKRVKKKVESSVQDIADDLIKLYAEREASKGYAFSPDGDMQRE 616
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY+ T DQ ++ +++ D+ E+E PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 617 FELSFPYQETEDQLRSIHEIKLDM-EKERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 675
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH+ + ERF +YP +++GLLSRF++K ++ E + +K+G ++I+VGT
Sbjct: 676 VAILVPTTILAQQHYQTMRERFQEYP-VEIGLLSRFRTKKQQTETVKGLKNGTVDIVVGT 734
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL ++Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 735 HRLLSKEIIYKDLGLLIIDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSMLGV 794
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ E+ RGGQV+++ R++ +E + +
Sbjct: 795 RDLSVIETPPENRFPVQTYVMEYNGGLVREAIEREMARGGQVYFLYNRVEDIERKAEEIS 854
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHGQ +LE M F G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 855 MLVPDAKVVAAHGQMTENELESVMLSFLGGEADVLVSTTIIETGVDIPNVNTLIVFDADR 914
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 915 MGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 974
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYK--SVQIDININPR 499
IRG G + G QQ G + +VG DL+ +ML E++ + E+ YK S++ID+ I+
Sbjct: 975 SIRGAGNLLGSQQHGFIDSVGFDLYSQMLKEAIEERKEN---PETYKKPSLEIDLEIDAY 1031
Query: 500 LPSEYINHLENPMEM 514
+P Y+ +EM
Sbjct: 1032 IPDAYLADGNQKIEM 1046
>gi|372222686|ref|ZP_09501107.1| transcription-repair coupling factor [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 1120
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/557 (40%), Positives = 336/557 (60%), Gaps = 24/557 (4%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQK 95
+ AW++ K K K ++ + +L++LY R +K Y P + E A F YE TPDQ
Sbjct: 506 SAAWKKLKQKTKSRVKHIAFNLIKLYAKRRTEKGFQYAPDSYLQHELEASFIYEDTPDQA 565
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
KA D ++D+ E E PMDRLICGDVGFGKTEVA+RA F V GKQ VL PT +LA QH
Sbjct: 566 KATEDFKKDM-ESERPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQH 624
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
+R ++P + + L+RF++ EK++ L+ ++ G ++II+GTH L+ V + +LG
Sbjct: 625 AKTFRKRLEEFP-VTIDYLNRFRTTKEKKDVLERLEAGQVDIIIGTHQLVNKNVKFKDLG 683
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL+VDEEQ+FGV K+K+ + K +VDVLTL+ATPIPRTL +L RD S+I+TPPP R
Sbjct: 684 LLIVDEEQKFGVAVKDKLKAIKENVDVLTLTATPIPRTLQFSLMAARDLSVITTPPPNRY 743
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
PI++ + ++E + A+ YE+ RGGQVF++ RI+ ++E LQ+ P I I HGQ
Sbjct: 744 PIESRVIGLNEEVIRDAVSYEISRGGQVFFIHNRIENIKEVAGMLQRLVPDAKIGIGHGQ 803
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
++LEE M F G +L+ T I+ESGLD+ NANTI + + FGL+ L+Q+RGRVG
Sbjct: 804 MDGKKLEELMISFMNGEFDVLVSTTIIESGLDVPNANTIFIHNANNFGLSDLHQMRGRVG 863
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A Y P ++ +A +R+ ALE+ +LG GF +A KD+ IRG G + G +Q+
Sbjct: 864 RSNKKAFCYFITPPYESMTPEARKRIEALEQFTDLGSGFNIAMKDLEIRGAGDLLGGEQS 923
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCV------------ISVPYKSVQIDININPRLPSE 503
G + +G + + ++L E++ ++ E+ V K +D + P E
Sbjct: 924 GFINEIGFETYQKILSEAIDELKENEFKELYNEVEGNDRKKVYVKETTLDTDFQLLFPDE 983
Query: 504 YINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
YIN++ + + +NE E L QF + L+ ++G+ P LL + V+ +A
Sbjct: 984 YINNITERLNLYTKLNETTNETE-----LQQFEQQLKDRFGELPDEAVDLLNSVRVKWIA 1038
Query: 561 ADIGITKIY-ASGKMVG 576
IG+ K+ GK VG
Sbjct: 1039 NKIGLEKVVMKKGKFVG 1055
>gi|169830290|ref|YP_001716272.1| transcription-repair coupling factor [Candidatus Desulforudis
audaxviator MP104C]
gi|169637134|gb|ACA58640.1| transcription-repair coupling factor [Candidatus Desulforudis
audaxviator MP104C]
Length = 1176
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 231/553 (41%), Positives = 343/553 (62%), Gaps = 13/553 (2%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIA 80
E + PR S+L + W R K + + A+++M +L++LY R Q P Y NP
Sbjct: 560 EGETPRC-SRLGGSE-WARSKKRVREAVREMAQELLKLYAAR--QSLPGYRFPADNPWQR 615
Query: 81 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 140
EF FP+E TPDQ KA + V++D+ ER PMDRL+CGDVG+GKTEVA+RA+F V+ GK
Sbjct: 616 EFELAFPFEETPDQLKAIMQVKKDM-ERPRPMDRLLCGDVGYGKTEVAMRAVFKAVTDGK 674
Query: 141 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 200
QA VL PT VLA+QH ERF+ YP + + +LSRF+S E+++ L + G ++I++G
Sbjct: 675 QAAVLVPTTVLAQQHLQTFRERFNGYP-VVIEMLSRFRSVREQKQVLADLAAGKVDIVIG 733
Query: 201 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 260
TH L+ V + +LGL+VVDEEQRFGV KEK+ +VDV+TL+ATPIPRTLY++L G
Sbjct: 734 THRLVQDDVQFADLGLIVVDEEQRFGVLHKEKLKLRHPNVDVITLTATPIPRTLYMSLVG 793
Query: 261 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 320
RD SL+ TPP +R P++T + + A+ EL RGGQV++V R+ L+ +L
Sbjct: 794 IRDTSLLETPPLDRFPVQTFVVEEDPVLIREAVGRELARGGQVYFVHNRVFELDRVAGWL 853
Query: 321 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 380
Q+ P IA+AHGQ QLE+ M F GA +L+CT I+E+GLDI N NT++V++
Sbjct: 854 QELVPEARIAVAHGQMREDQLEQVMLDFVAGAYDVLVCTTIIETGLDITNVNTLVVKEAD 913
Query: 381 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKD 440
Q GLAQLYQLRGRVGR+++ A+AY + LL + A +RL A+ + + G GF+LA++D
Sbjct: 914 QLGLAQLYQLRGRVGRSNRLAYAYFTFRRDRLLGEAAEKRLRAIRDFTDFGSGFRLAKRD 973
Query: 441 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 500
+ IRG G + G +Q G++ VG +++ +L ES+ ++ +++V +++ + L
Sbjct: 974 LEIRGAGNLLGTEQHGNISVVGFEMYCRLLEESVRELKGEAPPE-EFETV-VEVPVTAFL 1031
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P +YI E ++ + + Q + + E LR ++G P +E LL +R MA
Sbjct: 1032 PDDYIPDPEQKVQFYHLLARV--QQVEDVDHVAEELRDRFGSPPAPVENLLAIARIRAMA 1089
Query: 561 ADIGITKIYASGK 573
I I G+
Sbjct: 1090 KGFRIKSINGQGR 1102
>gi|383763136|ref|YP_005442118.1| transcription-repair coupling factor [Caldilinea aerophila DSM 14535
= NBRC 104270]
gi|381383404|dbj|BAM00221.1| transcription-repair coupling factor [Caldilinea aerophila DSM 14535
= NBRC 104270]
Length = 1262
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/452 (47%), Positives = 304/452 (67%), Gaps = 5/452 (1%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQF 86
P +++L T W+ K + + A+ ++ DL++LY R R PY P +P E A F
Sbjct: 591 PPVINRLG-TADWQIVKERARRAVAEIADDLLKLYAERELVIRDPYSPDSPWQEEMEAAF 649
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
PY+ T DQ A V+RD+ E E PMDRLICGDVG+GKTEVA+RA F ++ GKQ LA
Sbjct: 650 PYQETEDQLMAVEAVKRDM-ESERPMDRLICGDVGYGKTEVAIRAAFKAINDGKQVAFLA 708
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT VLA+QH+ +S R +++P ++V +LSRF++ A++++ L+ ++ G ++I+VGTH LL
Sbjct: 709 PTTVLAQQHYRTISNRLARFP-VRVEMLSRFRTPAQQQKVLEGLRTGAVDIVVGTHRLLS 767
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
V + +LGLL++DEEQRFGV QKE+I + +DVLTLSATPIPRTL+++L+G RD S
Sbjct: 768 QDVEFKDLGLLIIDEEQRFGVAQKEQIKQLRTQIDVLTLSATPIPRTLHMSLSGIRDMST 827
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPP ER PI T L+ + V AI+ EL+R GQVF V R++ + + +Q+ P
Sbjct: 828 INTPPKERQPIHTVLAEYDDVLVKQAIQRELNRKGQVFVVNDRVRDIYRLAERIQRLVPE 887
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+A+ HGQ R+LEE M +FA+G I +L+ T I+E+GLDI NANTII+ FGLAQ
Sbjct: 888 AVVAVGHGQMPERELEEVMMRFAEGEIDVLVATTIIENGLDIPNANTIIINRADHFGLAQ 947
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA-LEECRELGQGFQLAEKDMGIRG 445
LYQLRGRVGR+ + H YL Y +LS A RL A LE ELG GF++A +D+ IRG
Sbjct: 948 LYQLRGRVGRSTRRGHCYLLYEKHKVLSYDARRRLEAILESSEELGAGFRIAMRDLEIRG 1007
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV 477
G I G +Q+G + ++G DL+ +L +++++
Sbjct: 1008 AGDILGARQSGHIDSIGFDLYTRLLAQAINEA 1039
>gi|47093156|ref|ZP_00230931.1| transcription-repair coupling factor [Listeria monocytogenes str. 4b
H7858]
gi|47018463|gb|EAL09221.1| transcription-repair coupling factor [Listeria monocytogenes serotype
4b str. H7858]
Length = 1179
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 239/627 (38%), Positives = 368/627 (58%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 560 EGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 618 EEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K+G ++++VGTH
Sbjct: 677 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 856 MVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 1032
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 1033 PEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHA 1090
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++ IT +++ G++ ++ ++ F M+ + EG
Sbjct: 1091 LEVSIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----------GVGMEGT 1140
Query: 608 QIKAELLLELPREQLLNWIFQC--LAE 632
Q+K + + + + L W++Q LAE
Sbjct: 1141 QLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|417314259|ref|ZP_12100964.1| transcription-repair coupling factor [Listeria monocytogenes J1816]
gi|328467970|gb|EGF38997.1| transcription-repair coupling factor [Listeria monocytogenes J1816]
Length = 1179
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 239/627 (38%), Positives = 368/627 (58%), Gaps = 39/627 (6%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K PR L+KL W+R K K + ++Q + DL++LY R +K + + + EF
Sbjct: 560 EGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALRA F + GKQ
Sbjct: 618 EEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +K+G ++++VGTH
Sbjct: 677 AFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISA 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQD +
Sbjct: 856 MVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G QQ G + +VG DL+ +ML E++ K E VP V+IDI + +
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP---VEIDIQADAYI 1032
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + + L + ++G+ P +E L ++ A
Sbjct: 1033 PEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHA 1090
Query: 561 ADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGD 607
++ IT +++ G++ ++ ++ F M+ + EG
Sbjct: 1091 LEVSIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----------GVGMEGT 1140
Query: 608 QIKAELLLELPREQLLNWIFQC--LAE 632
Q+K + + + + L W++Q LAE
Sbjct: 1141 QLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|374321394|ref|YP_005074523.1| transcription-repair coupling factor [Paenibacillus terrae HPL-003]
gi|357200403|gb|AET58300.1| transcription-repair coupling factor (TRCF) [Paenibacillus terrae
HPL-003]
Length = 1175
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 227/564 (40%), Positives = 349/564 (61%), Gaps = 27/564 (4%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNPAI 79
+E K P+ + KL W R K+K + ++Q + DL++LY R Q P + +P
Sbjct: 547 SEDKEPK-IYKLG-GNEWTRVKSKVRSSVQDIADDLIKLYAER--QSAPGFAFEKDSPEQ 602
Query: 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 139
EF FPYE T DQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F G
Sbjct: 603 QEFEDMFPYEETRDQIRAIEEIKKDM-EQSRPMDRLLCGDVGYGKTEVAIRAAFKSAIEG 661
Query: 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 199
KQ VL PT +LA+QH++ ERFS YP + +LSRF+S+ E+ E + ++ G ++I++
Sbjct: 662 KQVAVLVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRSRKEQNETIKGVRQGTVDIVI 720
Query: 200 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 259
GTH LL +V+ +LG+L+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++
Sbjct: 721 GTHRLLSQDLVFKDLGMLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML 780
Query: 260 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 319
G RD S+I TPP R P++T++ S+ V AI+ E+ RGGQV+Y+ R++G++E
Sbjct: 781 GVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIEREMARGGQVYYLYNRVQGIQEMAAE 840
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
+ P + + HGQ +LE+T+ F G +L+ T+I+E+G+DI N NT+IV D
Sbjct: 841 INALVPDAKVGVGHGQMSESELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA 900
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 439
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E ELG GF++A +
Sbjct: 901 DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR 960
Query: 440 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCV----ISVPYKSVQIDIN 495
D+ IRG G + G +Q G + +VG DL+ +ML E ++K + +S S ID+
Sbjct: 961 DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVSVLGEEDLSNRNWSTSIDLG 1020
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
++ LP +YI +E+ + AA M+ + L ++G P E +L L
Sbjct: 1021 VDAYLPGDYIYDSIQKIEIYKKV--AAVSTFDEAMELEDELVDRFGDLP---EAVLHLLA 1075
Query: 556 VRRMAADIGITKIYASGKMVGMKT 579
V R+ K+Y G+M G+++
Sbjct: 1076 VARL-------KVY--GRMYGIES 1090
>gi|210623288|ref|ZP_03293705.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275]
gi|210153689|gb|EEA84695.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275]
Length = 1147
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/544 (40%), Positives = 343/544 (63%), Gaps = 16/544 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYE 89
LS+L T W + K K + I+ M +L+ LY R K K + K+ EF +FPY+
Sbjct: 559 LSRLG-TQEWTKAKAKVRKEIEDMTEELINLYAKREKIKGYKFSKDTVWQKEFEDKFPYQ 617
Query: 90 PTPDQKKAFLDVERDLTERETP--MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147
T DQ KA D ++D+ E+P MDRLICGDVG+GKTEVA+RA F GKQ VL P
Sbjct: 618 ETDDQLKAIKDTKKDM---ESPRVMDRLICGDVGYGKTEVAIRAAFKACMDGKQVAVLVP 674
Query: 148 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS 207
T +LA+QH++ SERF+ YP I+V +LSRF++ ++++ ++ K G +++++GTH ++
Sbjct: 675 TTILAQQHYNTFSERFADYP-IRVEVLSRFKTPKQQKKIIEDAKKGMVDVLIGTHRIISK 733
Query: 208 RVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI 267
+ LGL+V+DEEQRFGVK KE + K +VDVLTLSATPIPRTL+++L+G RD ++I
Sbjct: 734 DIELPKLGLVVIDEEQRFGVKHKETLKKVKNTVDVLTLSATPIPRTLHMSLSGIRDMTVI 793
Query: 268 STPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGV 327
PP ER P+ T+++ + I+ E+ RGGQVF+V R++G+E D +++ P
Sbjct: 794 EEPPQERHPVITYVTEARDSIIQDEIEKEISRGGQVFFVYNRVEGIEGIADKVRKLVPDA 853
Query: 328 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 387
+A+AHG+ S+ LE+ + F Q +L+CT I+E+G+DI NANT+I+ D + GLAQL
Sbjct: 854 RVAVAHGRMSSKTLEDIIIAFMQKEFDVLVCTTIIETGMDIANANTMIIYDADKMGLAQL 913
Query: 388 YQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFG 447
YQLRGRVGR+ ++ +A+L Y LS+ A +RL A++E E G GF++A +D+ IRG G
Sbjct: 914 YQLRGRVGRSTRQGYAFLMYERNKSLSEIAEKRLKAIKEFTEFGSGFKIAMRDLEIRGAG 973
Query: 448 TIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPSEYIN 506
+ G QQ G + +G DL+ +ML E++ K+ E ++ V V+ID+ ++ +P YI
Sbjct: 974 DVLGAQQHGHMAVIGYDLYVKMLNEAIRKIKGEPEIVEV---DVEIDLPVDAYIPDRYIE 1030
Query: 507 HLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
+EM + A +++D++ + E L ++ P + LL Y++ + + I
Sbjct: 1031 DEMAKIEMYKKIASIDSKEDMY---EVQEELEDRFSDIPRPTQTLLSIAYIKSLCKKLKI 1087
Query: 566 TKIY 569
K+Y
Sbjct: 1088 EKVY 1091
>gi|347754139|ref|YP_004861703.1| transcription-repair coupling factor [Candidatus Chloracidobacterium
thermophilum B]
gi|347586657|gb|AEP11187.1| transcription-repair coupling factor (mfd) [Candidatus
Chloracidobacterium thermophilum B]
Length = 1221
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 237/587 (40%), Positives = 345/587 (58%), Gaps = 13/587 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPA 78
F ET PR L KL + AW + K + K A++ M +L+ LY R L Q P P P
Sbjct: 610 FSSAETSTPR-LDKLGGS-AWAKTKARAKRAMRDMTEELLRLYAERQLVQGVPCAPDTPW 667
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPYE T DQ A D++RDL E PMDRL+CGDVGFGKTEVA+RA F VV
Sbjct: 668 QQEFEDAFPYELTRDQATALADIKRDL-ESPVPMDRLLCGDVGFGKTEVAMRAAFKVVME 726
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
+Q VL+PT VLA QH ERF+ +P + + ++SRF++ E + L G ++I+
Sbjct: 727 NRQVAVLSPTTVLAFQHTKTFRERFASFP-VTIEMVSRFRTAKEIADVLARTARGEVDIL 785
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL V + +LGL+++DEEQRFGV KEK+ + VDVLTLSATPIPRTL LAL
Sbjct: 786 IGTHRLLSKDVTFKHLGLVIIDEEQRFGVAHKEKLKQLRRKVDVLTLSATPIPRTLNLAL 845
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP +RLPI T ++ FS+ + SAI+ EL RGGQVF+V R++ + +
Sbjct: 846 AGLRDMSVIETPPRDRLPIHTVVAQFSENVIRSAIETELARGGQVFFVHNRVESIFTIAE 905
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+Q+ P I + HGQ ++LE M +F + +L+ T I+E+G+DI ANTI++
Sbjct: 906 LIQRLAPAARIGVGHGQMGEKELEAVMMRFVNHELDVLVSTTIIENGIDIPLANTIVINH 965
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q+GLAQLYQLRGRVGR+++ A AYL P ++ LS A +RLAA+ E +LG GF++A
Sbjct: 966 ADQYGLAQLYQLRGRVGRSNRRAFAYLLIPPETELSSVARQRLAAIREFSDLGSGFRIAA 1025
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI-- 496
D+ +RG G + G QQ+G + ++G DL+ +L E++ ++ + + +Q IN+
Sbjct: 1026 LDLELRGAGNLLGGQQSGHLDSIGFDLYCRLLDETVRELRGMPI----EEDIQTAINLRM 1081
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
+ R+P YI + + ++ D L + L +YG P + L + +
Sbjct: 1082 DIRIPETYIADVGQRLRTYKRI--SSAADDAALEALGQELDDRYGPRPPQVIALFEYARL 1139
Query: 557 RRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLT 603
R A+ +GI + G + ++ + + + +EV LT
Sbjct: 1140 RHRASALGILSLDWDGSTLSVRFADKPHIDVAALTRLVAEVPGARLT 1186
>gi|225181416|ref|ZP_03734859.1| transcription-repair coupling factor [Dethiobacter alkaliphilus AHT
1]
gi|225167814|gb|EEG76622.1| transcription-repair coupling factor [Dethiobacter alkaliphilus AHT
1]
Length = 1177
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 230/548 (41%), Positives = 350/548 (63%), Gaps = 13/548 (2%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E K+P+ +S L W R K + + ++Q++ +L+ LY R + + P + +F
Sbjct: 563 EGKKPK-MSALGGGE-WSRVKARVQASVQELAKELLALYAARETEPGHAFSPDHSWQKDF 620
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
A FPYE TPDQ +A +V++D+ E+ T DRL+CGDVG+GKTEVALR F V KQA
Sbjct: 621 EAAFPYEETPDQLQAIAEVKQDM-EKSTVTDRLLCGDVGYGKTEVALRGAFKAVMDDKQA 679
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT VLA+QH+ ER +P + VG+LSRFQS AE++E + +K G ++++VGTH
Sbjct: 680 AFLVPTTVLAQQHYHNFVERLEGFP-VNVGILSRFQSPAEQKETIKGLKEGTIDLVVGTH 738
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
+L + + +LG LVVDEEQRFGV+ KE+I K ++DVLT++ATPIPRTL+++L G R
Sbjct: 739 RILSKDIRFRDLGFLVVDEEQRFGVRHKERIKMLKKNLDVLTMTATPIPRTLHMSLVGVR 798
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP +R PI+T++ +S + A+ EL+RGGQV++V R++ + LQ+
Sbjct: 799 DMSVIETPPEDRYPIQTYVLEYSDALIREAVMRELNRGGQVYFVHNRVQSINRWAAKLQE 858
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P V +A+AHGQ +LE+ M F +G +L+ T IVE+GLDI N NTII+QD +F
Sbjct: 859 LMPEVRLAVAHGQMPEDRLEKVMMGFLEGEYDVLLSTTIVEAGLDIPNVNTIIIQDADKF 918
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GLAQLYQLRGRVGR+++ A+AYL Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 919 GLAQLYQLRGRVGRSNRIAYAYLTYQKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLE 978
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRL 500
IRG G I G +Q G + VG DL+ ++L +++ K E P +I+I + L
Sbjct: 979 IRGAGNILGPEQHGFMMAVGFDLYVKLLEDAIRTYKGQEEDTRQEP----RIEIQADAYL 1034
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P+ YI+ + ++V + AA + + +++ E L +YG P + E LL +V+ +A
Sbjct: 1035 PASYIS--DARQKIVFYQKVAAVESVEQVLEAKEELCDRYGPLPAAAENLLNVAHVKLLA 1092
Query: 561 ADIGITKI 568
++ ++ +
Sbjct: 1093 RELYVSSV 1100
>gi|319654942|ref|ZP_08009016.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2]
gi|317393367|gb|EFV74131.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2]
Length = 1179
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/494 (42%), Positives = 322/494 (65%), Gaps = 6/494 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ + KL W+R K K + ++Q + DL++LY R K + P E
Sbjct: 557 SEAKEPK-IYKLGGND-WKRVKKKVQSSVQDIADDLIKLYAEREASKGYAFSPDGDMQRE 614
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 615 FEAAFPYQETEDQIRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 673
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I++GLLSRF+SK ++ E L +K G ++++VGT
Sbjct: 674 VAILVPTTILAQQHYETMRERFQDYP-IEIGLLSRFRSKKQQTETLKGLKAGTIDVVVGT 732
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + Y LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 733 HRILSKDIQYRELGLLIIDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSMLGV 792
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL R GQV+++ R++ +E + +
Sbjct: 793 RDLSVIETPPENRFPVQTYVMEYNGALVREAIERELARDGQVYFLYNRVEDIERKAEEIS 852
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 853 MLVPDARVTYAHGKMTENELESVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVHDADK 912
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 913 MGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 972
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL-SKVDEHCVISVPYKSVQIDININPRL 500
IRG G + G +Q G + +VG DL+ +ML E++ + D+ + ++ID++++ +
Sbjct: 973 SIRGAGNLLGAEQHGFIDSVGFDLYSQMLKEAIEERKDKLDGVEAKPAKIEIDLDVDAYI 1032
Query: 501 PSEYINHLENPMEM 514
P Y++ +EM
Sbjct: 1033 PDFYLSDGHQKIEM 1046
>gi|295702293|ref|YP_003595368.1| transcription-repair coupling factor [Bacillus megaterium DSM 319]
gi|294799952|gb|ADF37018.1| transcription-repair coupling factor [Bacillus megaterium DSM 319]
Length = 1176
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 225/588 (38%), Positives = 361/588 (61%), Gaps = 20/588 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ + KL W++ K K + ++Q + DL++LY R K + P E
Sbjct: 558 SEGKEPK-VYKLGGND-WKKVKRKVESSVQDIADDLIKLYAEREASKGYAFSPDGDLQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY+ T DQ ++ ++++D+ E E PMDRL+CGDVG+GKTEVA+RA F V+ GKQ
Sbjct: 616 FETAFPYQETEDQLRSVQEIKKDM-EHERPMDRLLCGDVGYGKTEVAIRAAFKAVTDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+S+ +++E + +K+G +++++GT
Sbjct: 675 VAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRSRKQQQETIKGLKNGTVDVVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V+Y +LGLLV+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVIYKDLGLLVIDEEQRFGVTHKEKIKQMKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL R GQV+++ R++ +E + +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPVLVREAIERELARDGQVYFLYNRVEDIERKAEEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHG+ +LE + F +G +++ T I+E+G+DI N NT+IV + +
Sbjct: 854 MLVPDARVTYAHGKMNETELEAVILSFLEGEYDVIVSTTIIETGVDIPNVNTLIVNNADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYHKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + SV + +V+++++++ +P
Sbjct: 974 SIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGSDGESVKF-NVEMNLDLDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
+YI +EM A +DI + + + ++G+ P +E L K
Sbjct: 1033 DQYITDGRLKIEMYKRFRGIEALEDI---QELQDEMIDRFGEYPAEVEYLFK-------- 1081
Query: 561 ADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 608
+ TK+YA +V +++ ++ + +S V L GDQ
Sbjct: 1082 --VAETKVYAMQNLVESILQSKQEISILLSEEASSTVDGQKLFMLGDQ 1127
>gi|417965986|ref|ZP_12607437.1| Transcription-repair coupling factor, partial [Candidatus
Arthromitus sp. SFB-4]
gi|380335402|gb|EIA25601.1| Transcription-repair coupling factor, partial [Candidatus
Arthromitus sp. SFB-4]
Length = 584
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 226/553 (40%), Positives = 349/553 (63%), Gaps = 9/553 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEF 82
E K P+ ++KL + W + KTK + +I ++ +L++LY R K Y K+ ++F
Sbjct: 15 EGKSPK-VNKLG-GSEWIKIKTKTRRSIDEIAYNLVKLYAKRNILKGYAYSKDSTWQSQF 72
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
+FPY TPDQ A D+++D+ E + PMDRL+CGDVG+GKTEVALRA+F V +Q
Sbjct: 73 EQEFPYVETPDQLLAIEDIKKDM-ESDKPMDRLLCGDVGYGKTEVALRAMFKAVVDKRQV 131
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
+ L PT +LA QH++ + +RF +P V +LSRF++ +++E L +K G ++IIVGTH
Sbjct: 132 VFLVPTTILADQHYNNIKKRFEGFP-FNVDVLSRFRTTKQQKETLSKLKLGEIDIIVGTH 190
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V + NLGLL++DEEQRFGVK KEKI K S+DVL+LSATPIPRTL++++ G R
Sbjct: 191 RLLSKDVQFKNLGLLIIDEEQRFGVKHKEKIKEMKESIDVLSLSATPIPRTLHMSMVGVR 250
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP +R P++T + +S + V AI E+ R GQ F++ ++ +++ +LQ
Sbjct: 251 DISVIDTPPEDRYPVQTFVVEYSDQLVRGAIMKEISRCGQGFFLYNSVENIDKMNIYLQN 310
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P ++ HGQ R++E+ + KF I L+CT I+E+G+DI+NANTII+ + +F
Sbjct: 311 LVPECRFSVIHGQMGEREIEDILIKFLNKDIDFLVCTTIIETGIDIKNANTIIIHNADKF 370
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR++K A+AYL Y +LS+ A +RL L++ ELG GF++A KD+
Sbjct: 371 GLSQLYQLRGRVGRSNKVAYAYLTYKKDRVLSEVAEKRLKTLKDFTELGSGFKVAMKDLE 430
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G + GE Q G + VG DL+ +ML +++ K+ + V V +V +DI I+ +
Sbjct: 431 IRGSGNLIGESQHGQMSVVGYDLYCKMLEDAI-KMLQGEVTCVEVNTV-VDIKIDVYIKD 488
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
YI +E+ + + +D + E L ++ P+ ++ L+K Y+R +
Sbjct: 489 NYIEDEMQKLEIYKKI--SCIEDKKDISYIKEELMDRFSVIPFEIDNLIKISYIRALGKK 546
Query: 563 IGITKIYASGKMV 575
+G ++I G +
Sbjct: 547 LGFSQIKEIGDKI 559
>gi|306820709|ref|ZP_07454337.1| transcription-repair coupling factor [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551319|gb|EFM39282.1| transcription-repair coupling factor [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 701
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 225/560 (40%), Positives = 356/560 (63%), Gaps = 18/560 (3%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQFPY 88
+L+KL ++ W+++K K K A++++ L++LY R QK + K+ EF + F +
Sbjct: 129 SLTKLG-SSQWKKQKAKAKKAVEEIARYLVDLYAQRENQKGYAFSKDTVWQREFESLFAF 187
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
E T DQ ++ +V++D+ E PMDRL+CGDVG+GKTEVA+R IF KQ L PT
Sbjct: 188 EETQDQIRSIKEVKKDM-ENIKPMDRLLCGDVGYGKTEVAIRGIFKACMDSKQVAFLVPT 246
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
+LA+QH+ VSERF +P +KV +LSRF+++ E+ E L+ +K G +++I+GTH +L
Sbjct: 247 TILAQQHYKTVSERFENFP-LKVEVLSRFKTRKEQNEILEKLKLGEVDVIIGTHRILSKD 305
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
V++ +LGLLV+DEEQRFGVK KEKI S K ++DVLTL+ATPIPRTL ++L+G RD S++
Sbjct: 306 VIFKDLGLLVIDEEQRFGVKDKEKIKSLKTNIDVLTLTATPIPRTLNMSLSGIRDMSVLE 365
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
PP +RL + T+++ + ++ AI+ E+ RGGQVF+V ++ +++ +++ P V
Sbjct: 366 EPPNDRLSVITYVTEAREGIIMDAIEREISRGGQVFFVYNSVEDIDKMSANIKKLVPNVR 425
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+A+AHGQ LE+ M + + +L+CT I+E+G+DI NANTIIV + + GL+QLY
Sbjct: 426 LAVAHGQMQPTVLEDIMMDYLEKKYDLLLCTTIIETGMDISNANTIIVYNADKMGLSQLY 485
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
QLRGRVGR+ ++A+AYL Y +L++ A +RL A+ + E G GF++A D+ +RG G
Sbjct: 486 QLRGRVGRSSRQAYAYLMYEKDKVLTEIAQKRLKAIRDFTEFGSGFKVAMMDLELRGSGN 545
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISVPYKSVQIDININPRLPSEY 504
+ GE Q+G + VG DL+ +ML +S ++ + E V++ Y I +N +P Y
Sbjct: 546 LLGETQSGHIEEVGYDLYIKMLNDSFNRLKGNIQEEKVMTEVY------IKVNAYIPDTY 599
Query: 505 INHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADI 563
I ME+ + A ++E+D + + E ++ P+ +E LLK +R I
Sbjct: 600 IEDEMQKMEIYKKIASISSEEDYFDVQAEIED---RFSDIPFQVENLLKIATIRSYGEKI 656
Query: 564 GITKIYASGKMVGMKTNMNK 583
GI KI K+V +++ +K
Sbjct: 657 GIEKITQKNKIVIYESSKDK 676
>gi|403743477|ref|ZP_10953061.1| transcription-repair coupling factor [Alicyclobacillus hesperidum
URH17-3-68]
gi|403122721|gb|EJY56920.1| transcription-repair coupling factor [Alicyclobacillus hesperidum
URH17-3-68]
Length = 1176
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/542 (39%), Positives = 334/542 (61%), Gaps = 11/542 (2%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFPYEPTPDQKK 96
W++ K + ++ + DL++LY R + P + P P +F FPYE TPDQ +
Sbjct: 569 WQKVKNRVSKTVKDIAADLVKLYAQR--EATPGHAFSPDTPWQVDFENMFPYEETPDQLR 626
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A D++RD+ ER PMDRL+CGDVG+GKTEVA+RA F V GKQ VL PT VLA+QH+
Sbjct: 627 AIADIKRDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAVLVPTTVLAQQHY 685
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF+ +P + + +LSRF+S+ + + + +K G +++++GTH LL + + +LGL
Sbjct: 686 ETFKERFAGFP-VTIDMLSRFRSRKDSQACIKGLKDGTVDVVIGTHRLLQKSIQFKDLGL 744
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L+VDEEQRFGV KE++ + +VD LTL+ATPIPRTL++++ G RD S+I TPP R P
Sbjct: 745 LIVDEEQRFGVTHKERLKQLRANVDCLTLTATPIPRTLHMSMMGVRDLSVIETPPENRFP 804
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T++ +++ + A++ EL RGGQV++V ++ + + +Q+ P + +AHGQ
Sbjct: 805 VQTYVVEYNEGLIREALERELGRGGQVYFVYNQVHNIHRMAERVQEMAPDARVTVAHGQM 864
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE M F +G I IL+ T I+E+GLDI N NT+IV D +FGL+QLYQLRGRVGR
Sbjct: 865 QEAELERVMLDFLEGEIDILVTTTIIETGLDISNVNTLIVYDADKFGLSQLYQLRGRVGR 924
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+++ A+AY Y +L++ A +RL+A++E ELG GF++A +D+ IRG G + G +Q G
Sbjct: 925 SNRIAYAYFTYQRDKVLTEVAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHG 984
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +VG D++ EML +++ ++ V S ID+ + +P YI+ + M
Sbjct: 985 FINSVGFDMYTEMLAQAVRELRGEQVEQGVEPS--IDLPVEAYIPDTYISDSAQKIAMYK 1042
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVG 576
A Q + E L +YG P + LL ++ +AA G+ +I G
Sbjct: 1043 RFR--AVQTLMEADDLEEELEDRYGDLPTEVRNLLNVTRLKSLAASAGVDQISVHGAETA 1100
Query: 577 MK 578
++
Sbjct: 1101 IR 1102
>gi|433653906|ref|YP_007297614.1| transcription-repair coupling factor Mfd [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292095|gb|AGB17917.1| transcription-repair coupling factor Mfd [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 1166
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 232/582 (39%), Positives = 360/582 (61%), Gaps = 11/582 (1%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQ 85
+P L+KL W + K K K A++ + DL++LY R K + K+ P +F +
Sbjct: 561 KPPKLNKLG-GNEWSKLKKKAKKAVEDLAKDLIKLYAKRQTMKGYAFSKDTPWQKDFEER 619
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
FPYE T DQ + +++RD+ E + PMDRL+CGDVG+GKTEVALRA F V+ GKQ L
Sbjct: 620 FPYEETEDQLRCIEEIKRDM-ESDKPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVAFL 678
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA+QH++ +RF +P +K+ +LSRF+S E+ + + + G ++I+VGTH +L
Sbjct: 679 CPTTILAEQHYNNFVQRFKDFP-VKIEMLSRFRSYKEQSQIIKSLAEGTIDILVGTHKIL 737
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
+ V + +LGLL++DEEQRFGVK KEKI K ++DVL+LSATPIPRTL+++L G RD S
Sbjct: 738 QNDVKFKDLGLLIIDEEQRFGVKHKEKIKKLKENIDVLSLSATPIPRTLHMSLIGIRDMS 797
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I PP +R P++T++ F++E + AI EL RGGQV++V RI G+E +++ P
Sbjct: 798 VIENPPEDRYPVQTYVVEFNEELIRDAILRELGRGGQVYFVYNRINGIERMASIIKELVP 857
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
+A+AHGQ +LE M F G IL+CT I+E+GLDI N NTIIV D + GL+
Sbjct: 858 SARVAVAHGQMDEGKLENIMIGFLNGDYDILVCTTIIETGLDIPNVNTIIVYDSDKMGLS 917
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
QLYQLRGRVGR+++ A+AY Y ++++ A +RL A++E E G GF++A +D+ IRG
Sbjct: 918 QLYQLRGRVGRSNRLAYAYFTYRKDKVITEVAEKRLEAIKEFTEFGSGFKIAMRDLEIRG 977
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYI 505
G + G +Q G + +G D++ +L E++ + P + IDI ++ + EYI
Sbjct: 978 AGNLLGAEQHGHIDAIGYDMYLRLLDEAIKGLKGEVEDEKP--NTTIDIKVSAYIDKEYI 1035
Query: 506 NHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
+EM + E+D+ + + L ++ + P ++E L+ Y++ +A D+
Sbjct: 1036 EDENQRLEMYKKISSIENEKDVEDI---KDELIDRFKEYPKAVESLIDVAYLKALARDVN 1092
Query: 565 ITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 606
IT+I G + +K +K + ++DS+ +E R + F G
Sbjct: 1093 ITEIAEKGASIILKFKDSKSINSGIVDSLVNE-FRGRIMFSG 1133
>gi|417966137|ref|ZP_12607546.1| Transcription-repair coupling factor, partial [Candidatus
Arthromitus sp. SFB-5]
gi|380343384|gb|EIA31764.1| Transcription-repair coupling factor, partial [Candidatus
Arthromitus sp. SFB-5]
Length = 693
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 227/553 (41%), Positives = 347/553 (62%), Gaps = 9/553 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEF 82
E K P+ ++KL + W + KTK + +I ++ +L++LY R K Y K+ ++F
Sbjct: 83 EGKSPK-VNKLG-GSEWIKIKTKTRRSIDEIAYNLVKLYAKRNILKGYAYSKDSTWQSQF 140
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
+FPY TPDQ A D+++D+ E + PMDRL+CGDVG+GKTEVALRA+F V +Q
Sbjct: 141 EQEFPYVETPDQLLAIEDIKKDM-ESDKPMDRLLCGDVGYGKTEVALRAMFKAVVDKRQV 199
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
+ L PT +LA QH++ + +RF +P V +LSRF++ +++E L +K G ++IIVGTH
Sbjct: 200 VFLVPTTILADQHYNNIKKRFEGFP-FNVDVLSRFRTTKQQKETLSKLKLGEIDIIVGTH 258
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V + NLGLL++DEEQRFGVK KEKI K S+DVL+LSATPIPRTL++++ G R
Sbjct: 259 RLLSKDVQFKNLGLLIIDEEQRFGVKHKEKIKEMKESIDVLSLSATPIPRTLHMSMVGVR 318
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP +R P++T + +S + V AI E+ R GQ F++ ++ +++ +LQ
Sbjct: 319 DISVIDTPPEDRYPVQTFVVEYSDQLVRGAIMKEISRCGQGFFLYNSVENIDKMNIYLQN 378
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P ++ HGQ R++E+ + KF I L+CT I+E+G+DI+NANTII+ + +F
Sbjct: 379 LVPECRFSVIHGQMGEREIEDILIKFLNKDIDFLVCTTIIETGIDIKNANTIIIHNADKF 438
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR++K A+AYL Y +LS+ A +RL L++ ELG GF++A KD+
Sbjct: 439 GLSQLYQLRGRVGRSNKVAYAYLTYKKDRVLSEVAEKRLKTLKDFTELGSGFKVAMKDLE 498
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G + GE Q G + VG DL+ +ML E K+ + V V +V +DI I+ +
Sbjct: 499 IRGSGNLIGESQHGQMSVVGYDLYCKML-EDAIKMLQGEVTCVEVNTV-VDIKIDVYIKD 556
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
YI +E+ + + +D + E L ++ P+ ++ L+K Y+R +
Sbjct: 557 NYIEDEMQKLEIYKKI--SCIEDKKDISYIKEELMDRFSVIPFEIDNLIKISYIRALGKK 614
Query: 563 IGITKIYASGKMV 575
+G ++I G +
Sbjct: 615 LGFSQIKEIGDKI 627
>gi|424722744|ref|ZP_18151769.1| transcription-repair coupling factor [Enterococcus faecalis ERV73]
gi|402400926|gb|EJV33731.1| transcription-repair coupling factor [Enterococcus faecalis ERV73]
Length = 1189
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/509 (41%), Positives = 327/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 563 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 620
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 621 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 680 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 739 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 799 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE ++ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 859 ELQALVPDARIAYAHGQMTEVQLENSLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 919 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 979 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1037
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1038 YIPGTYITDERQKIEIYKRIRQLENMDMY 1066
>gi|384916040|ref|ZP_10016240.1| Transcription-repair coupling factor mfd (Superfamily II helicase)
[Methylacidiphilum fumariolicum SolV]
gi|384526568|emb|CCG92111.1| Transcription-repair coupling factor mfd (Superfamily II helicase)
[Methylacidiphilum fumariolicum SolV]
Length = 1055
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 238/560 (42%), Positives = 343/560 (61%), Gaps = 27/560 (4%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP-----PYPKNPAI 79
TK+ L L T R + K+A +K V DL E L ++ +R +PK+
Sbjct: 462 TKKQPKLDSLGGT-----RWLRAKIATEKAVSDLAERML-KINAEREVLEGFSFPKDDHW 515
Query: 80 A-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF F YE T DQ KA + +RD+ E + PMDRLICGDVGFGKTEVA+RAIF V
Sbjct: 516 QREFEESFIYEETADQLKAIEETKRDM-ESKRPMDRLICGDVGFGKTEVAIRAIFKAVMG 574
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQA +LAPT VLAKQHF +SERF+ YP I+ LL R +E++E L +K+G ++++
Sbjct: 575 GKQAALLAPTTVLAKQHFQTLSERFADYP-IQTALLCRLIKNSEEKEILAGLKNGSIDVV 633
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + V + +LGL+V+DEEQRFGV QKEK +DVL+LSATPIPRTLYLAL
Sbjct: 634 IGTHRLLSADVAFKDLGLIVIDEEQRFGVLQKEKWKDTFRLIDVLSLSATPIPRTLYLAL 693
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD SLI TPPP R PI+T +SA+ + + AI+ EL+RGGQV+++ RI+ +E+
Sbjct: 694 AGARDMSLIETPPPNRYPIETIVSAYDERIIRQAIERELNRGGQVYFLHNRIRTIEKVAS 753
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
++ P V IAI HG+ +LEE ME F G I +L+ T+I+E+GLDI NANTII+
Sbjct: 754 RIKSLLPSVKIAIGHGRMKKSELEEVMESFVNGQIDVLLATSIIENGLDIPNANTIIIDR 813
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
FGLA LYQLRGRVGR++++A+AYL P + A +R+ A++E +LG GFQ+A
Sbjct: 814 ADLFGLADLYQLRGRVGRSNQKAYAYLLLPRDLFIQADAKKRIKAMQEHSQLGVGFQIAL 873
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G Q+G + +VG +L+ ++L +++ ++ + ++ V +D + P
Sbjct: 874 RDLEIRGAGNLLGTSQSGHIASVGFELYCKLLKKAVQRLQGKEIDTLTDCKVSLDF-LLP 932
Query: 499 R----------LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 548
+P Y+ E ++ + +A I L + + + ++G P +E
Sbjct: 933 EPGGGRHALAFIPFTYMERREERLQAYRQLAEAL--SIGELEEIKKGWKDRFGAWPEPVE 990
Query: 549 ILLKKLYVRRMAADIGITKI 568
L +R + A GI +I
Sbjct: 991 NLFSITEIRLIGAAKGIERI 1010
>gi|373464510|ref|ZP_09556047.1| transcription-repair coupling factor [Lactobacillus kisonensis
F0435]
gi|371762365|gb|EHO50899.1| transcription-repair coupling factor [Lactobacillus kisonensis
F0435]
Length = 771
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 235/621 (37%), Positives = 374/621 (60%), Gaps = 21/621 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVA--IQKMVVDLMELYLHRLKQKRPPYPKNP 77
+ +E K PR ++KL E KTK KVA I+ + +L++LY R +K +P +
Sbjct: 145 YVSSEDKHPR-INKLG---GGEWAKTKRKVASKIEDIADELIDLYAKRGSEKGYAFPPDD 200
Query: 78 AI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136
++ AEF A FPY TPDQ ++ +++RD+ ER+ PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 201 SLQAEFEASFPYTETPDQLRSATEIKRDM-ERQHPMDRLLVGDVGYGKTEVALRAAFKTI 259
Query: 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 196
GKQ L PT +LA+QH++ + +RFS YP I V +LSRFQ+KA+ +E L +K+G ++
Sbjct: 260 EVGKQVAFLVPTTILAQQHYETMLDRFSDYP-ITVRVLSRFQTKAQVKETLAGLKNGTVD 318
Query: 197 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 256
++VGTH LL V +N+LGLL++DEEQRFGVK KE+I + VDVLTL+ATPIPRTL +
Sbjct: 319 VVVGTHRLLSKDVHFNDLGLLIIDEEQRFGVKHKERIKEMRSDVDVLTLTATPIPRTLNM 378
Query: 257 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 316
++ G RD S+I TPP R PI+T++ + + AI+ E+ RGGQVFY+ R++ +E
Sbjct: 379 SMMGVRDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMARGGQVFYLHNRVEDIERT 438
Query: 317 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 376
++ + P + HGQ Q+E+ + F G +L+ T I+E+G+DI N NT+ V
Sbjct: 439 VEQISALVPSARVGYIHGQMSENQMEDILYDFINGEYDVLVTTTIIETGVDIPNVNTLFV 498
Query: 377 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 436
++ + GL+QLYQLRGR+GR+ + A++Y Y +L++ +RL A+ + ELG GF++
Sbjct: 499 ENADRMGLSQLYQLRGRIGRSSRVAYSYFMYQPNKVLTEIGEKRLEAIRDFTELGSGFKI 558
Query: 437 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-VQIDIN 495
A +D+ IRG G + G+QQ G V +VG DL+ +ML ++++K YK+ I+++
Sbjct: 559 AMRDLSIRGAGNLLGKQQHGFVDSVGYDLYTQMLSDAVAKKRGK---DFEYKTDATIELD 615
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
+ LPS+YI + +E+ + QD L + + L ++G S+ LL
Sbjct: 616 LEAYLPSDYIQDNQQKIEIYKRIRQIENQD--QLTEVKDDLIDRFGDYGDSVANLLDIAE 673
Query: 556 VRRMAADIGITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGDQIKAE 612
++ A + KI+ V M + K ++++++ R ++ E + +
Sbjct: 674 LKMYADYALVAKIHQQAPKVTMTFSSRANAEFESKELLEAISKTKFRATINTENETYLIQ 733
Query: 613 LLLELPREQLLNWIFQCLAEL 633
L ++ + +W+ Q +A L
Sbjct: 734 LTVQ---PNMKSWLHQLVALL 751
>gi|377831056|ref|ZP_09814044.1| transcription-repair coupling factor [Lactobacillus mucosae LM1]
gi|377555153|gb|EHT16844.1| transcription-repair coupling factor [Lactobacillus mucosae LM1]
Length = 1192
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/485 (41%), Positives = 318/485 (65%), Gaps = 5/485 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE-FAAQFPYEPTPDQKK 96
T W + K + ++ + +L++LY R +K +PK+ + E F A+FPY+ TPDQ +
Sbjct: 568 TEWAKTKARVAARVEDIADELVDLYAARETEKGYAFPKDDYLQEKFEAEFPYQETPDQLR 627
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
+ +++ D+ E E PMDRL+ GDVG+GKTEVALRA+F V GKQ L PT +LA+QH+
Sbjct: 628 SIKEIKADM-ESERPMDRLLVGDVGYGKTEVALRAVFKAVLGGKQVAFLVPTTILAQQHY 686
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
D + RF +P I++ ++SRF++ + +E +K+G ++++VGTH LL V +N+LGL
Sbjct: 687 DTMKSRFEGFP-IEIAMMSRFRTPKQLKETEAGLKNGKIDVVVGTHRLLSKDVQFNDLGL 745
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LV+DEEQRFGVK KE++ K ++DVLTL+ATPIPRTL++++ G RD S+I TPP +R P
Sbjct: 746 LVIDEEQRFGVKHKERLKQLKNNIDVLTLTATPIPRTLHMSMMGVRDLSVIETPPADRYP 805
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+T++ ++ + I EL RGGQV+Y+ R+ +E + LQ+ P I HG+
Sbjct: 806 IQTYVMEQNQAAIRDGILRELQRGGQVYYLHNRVNDIERTVAELQELVPEARIGYIHGKM 865
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
QLE + F QG +L+ T+I+E+G+DI N NT+ V++ + GL+QLYQ+RGR+GR
Sbjct: 866 TEAQLEGVLYDFIQGEDDVLVTTSIIETGVDIANVNTLFVENADRMGLSQLYQIRGRIGR 925
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+++ A+AY Y +L++ +RLAA+ + ELG GF++A +D+ IRG G + G+QQ G
Sbjct: 926 SNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDLAIRGAGNLLGKQQHG 985
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +VG DL+ EML E+++K + + P + +IDIN+ LP EY++ + +
Sbjct: 986 FIDSVGYDLYAEMLSEAVAK--KRGQVKKPIANTEIDINVEAYLPDEYVSDSRQKIALYK 1043
Query: 517 EAEKA 521
+ +A
Sbjct: 1044 QVRQA 1048
>gi|187777479|ref|ZP_02993952.1| hypothetical protein CLOSPO_01047 [Clostridium sporogenes ATCC 15579]
gi|187774407|gb|EDU38209.1| transcription-repair coupling factor [Clostridium sporogenes ATCC
15579]
Length = 1172
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/620 (36%), Positives = 377/620 (60%), Gaps = 27/620 (4%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K+P+ ++KL ++ W + K K K +I+++ DL++LY R K Y + +
Sbjct: 563 SEGKKPK-VNKLG-SSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGYKYSDDTVWQKQ 620
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F +FPYE TPDQ A D++RD+ E PMDRL+CGDVG+GKTEVA+RA F V GKQ
Sbjct: 621 FEEEFPYEETPDQVLAIEDIKRDM-ESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQ 679
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ +RFS +P + V ++SRF++ +E++ + IK G+++I++GT
Sbjct: 680 VAFLVPTTILAQQHYNNFKQRFSDFP-VTVDVISRFRTLSEQKATIKSIKEGNVDILIGT 738
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + + +LGLL++DEEQRFGVK KEK+ + K +VDVLTLSATPIPRTL+++L G
Sbjct: 739 HRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLVGV 798
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP ER P++T++ ++ + + +I E+ RGGQ+++V R++ + E ++
Sbjct: 799 RDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVYNRVESIHEMASYIS 858
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P + IAHGQ ++LE + F + IL+ T I+E+G+DI+N NT+I+ D +
Sbjct: 859 KLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILVATTIIETGMDIKNVNTMIIYDADK 918
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A+++ ELG GF++A KD+
Sbjct: 919 MGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALKDL 978
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDININ 497
IRG G + G Q G + ++G DL+ ML +++ +D+ V +++ I+
Sbjct: 979 EIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPV------ETSVELKID 1032
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+P+ YI +E+ + ++ + M E L ++ P S+ L+ Y+R
Sbjct: 1033 AYIPNTYIKDETQKIEVYKKIASIDSKEEF--MDIEEELEDRFSDIPISVYNLMNISYIR 1090
Query: 558 RMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV-----HRNSLTFEGDQ 608
+ + + +I V K+++ +K+ K+++D + +V + ++ +
Sbjct: 1091 SLGKKLDVEEIKEISNEVVFQFEDKSSLKEKIVKIIMDKYSKQVAFKLSEKPAIGYSIKN 1150
Query: 609 IKAELLLELPREQLLNWIFQ 628
IK E +L + ++ L +I +
Sbjct: 1151 IKKEQVLSVIKD-FLEYIVE 1169
>gi|433445435|ref|ZP_20409842.1| transcription-repair coupling factor [Anoxybacillus flavithermus
TNO-09.006]
gi|432001083|gb|ELK21968.1| transcription-repair coupling factor [Anoxybacillus flavithermus
TNO-09.006]
Length = 1170
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/493 (43%), Positives = 324/493 (65%), Gaps = 7/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ + KL T W++ K K + ++Q + DLM+LY R K + P N E
Sbjct: 558 SEGKEPK-IYKLGGT-EWKKVKKKVESSVQDIAEDLMKLYAEREASKGYAFSPDNEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ ++ +++RD+ E E PMDRL+CGDVG+GKTEVALRA F + GKQ
Sbjct: 616 FEAAFPYQETEDQLRSIREIKRDM-ESERPMDRLLCGDVGYGKTEVALRAAFKAIMDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ V ERF YP I VGLLSRF++K ++ E + +K G +++++GT
Sbjct: 675 VAFLVPTTILAQQHYETVRERFQGYP-INVGLLSRFRTKKQQTETIQGLKDGTIDMVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V + +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL+++L G
Sbjct: 734 HRLLSKDVSFKDLGLLIIDEEQRFGVAHKEKIKQLKTNIDVLTLTATPIPRTLHMSLIGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ +S V AI+ E+ RGGQVF++ R++ ++ + +
Sbjct: 794 RDLSVIETPPENRFPVQTYVMEYSPIIVREAIEREMARGGQVFFLYNRVEDIDRKAEEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 ALVPDARVAYAHGRMSEHELEAVMLAFLEGQYDVLVSTTIIETGVDIPNVNTLIVYDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRIAYAYFTYRKDKVLNEIAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG +L+ +ML E++ + P++ V+ID+ ++ +P
Sbjct: 974 SIRGAGNLLGAQQHGFIDSVGFELYSQMLKEAIEE-KRGTKQEKPFE-VEIDLEVDAYIP 1031
Query: 502 SEYINHLENPMEM 514
YI++ + +EM
Sbjct: 1032 EHYISNEQQKIEM 1044
>gi|384110050|ref|ZP_10010891.1| transcription-repair coupling factor (mfd) [Treponema sp. JC4]
gi|383868392|gb|EID84050.1| transcription-repair coupling factor (mfd) [Treponema sp. JC4]
Length = 1201
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 228/590 (38%), Positives = 355/590 (60%), Gaps = 17/590 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
NE PR L ++ + AWE RK K + A++++ L++LY R +PK
Sbjct: 593 NEGDHPR-LDRIG-SKAWESRKAKARAAVEEIAQKLIDLYSRRQAAVGYAFPKETEWQTA 650
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPYE TPDQ D++ D+ E+ PMDRLICGDVG+GKTE+A+RA F V GKQ
Sbjct: 651 FEAAFPYEDTPDQITVTEDIKADM-EKPVPMDRLICGDVGYGKTEIAMRAAFKAVMGGKQ 709
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
LAPT +LA+QH+D ERF +P +K+ +SRF S AE+++ L + G ++I+VGT
Sbjct: 710 VAFLAPTTILAEQHYDNCVERFKNFP-VKIERMSRFVSAAEQKKTLTRLALGEVDILVGT 768
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H ++ V + NLGL+++DEEQRFGVK KE++ K ++D LT+SATPIPRTL+++L
Sbjct: 769 HRIIQKDVKFKNLGLMIIDEEQRFGVKDKERLKVMKNNIDCLTMSATPIPRTLHMSLLKI 828
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD SL++TPP R PI+T + ++ +V AI+ E++RGGQ+FY+ R++ L + ++
Sbjct: 829 RDMSLLTTPPQNRQPIETVIDEYTDARVAHAIRQEIERGGQIFYLHNRVETLMDVRHKIE 888
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
Q P V + +AHGQ S +L++ +F G +LI T I+E+G+DI N NTII+
Sbjct: 889 QIVPEVLVDVAHGQMTSTELDDIFHRFKMGGFHVLIATTIIENGIDIPNVNTIIIDRADM 948
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
+G++QLYQLRGRVGR+D++A+AYL YP+ LS+ A++RL + + ELG GF++A KDM
Sbjct: 949 YGVSQLYQLRGRVGRSDRQAYAYLLYPEHKALSEVAMKRLQVISDFTELGSGFKIAMKDM 1008
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV-DEHCVISVPYKSVQIDININPRL 500
IRG G + G Q+G+V +VG D++ +L ++++++ + + + V +++ +
Sbjct: 1009 EIRGAGNLLGRDQSGEVYSVGFDMYVRLLNDAVNRLMAQKDYDAAEHSDVIMELEYTGFI 1068
Query: 501 PSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
P YI + + ME+ ++ AE D L ++G P + LL +R
Sbjct: 1069 PDTYIFNQQIKMEIYKKISSVTTDAEFD-----SVLGELNDRFGPIPEEVSSLLALAEIR 1123
Query: 558 RMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD 607
+ + I+ + V ++ KKV + ID + +N T D
Sbjct: 1124 ILCKKLKISSLRERQGEVKVEF---KKVSDISIDKFMKLLQKNPGTIRLD 1170
>gi|307244035|ref|ZP_07526154.1| transcription-repair coupling factor [Peptostreptococcus stomatis DSM
17678]
gi|306492559|gb|EFM64593.1| transcription-repair coupling factor [Peptostreptococcus stomatis DSM
17678]
Length = 1134
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/549 (39%), Positives = 342/549 (62%), Gaps = 10/549 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYE 89
L+KL + W + K + K I+ M +L++LY R +K + K+ EF +FP++
Sbjct: 558 LNKLG-SHDWSKAKHRVKKEIEDMTKELIDLYAKREARKGYKFSKDTIWQGEFEEKFPFQ 616
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
T DQ KA D ++D+ E MDRLICGDVG+GKTEVA+RAIF V GKQ VL PT
Sbjct: 617 ETDDQLKAIKDTKKDM-ESSKAMDRLICGDVGYGKTEVAIRAIFKAVMDGKQVAVLVPTT 675
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH++ ERF +YP ++V +LSRF++ ++++ + K G +++++GTH ++ +
Sbjct: 676 ILAQQHYNTFVERFEEYP-MRVEVLSRFKTAKQQKDIIKDAKKGLVDVLIGTHRIVSKDI 734
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
LGL+VVDEEQRFGV+ KE + K +VDVLTLSATPIPRTL+++L+G RD S+I
Sbjct: 735 DMPKLGLVVVDEEQRFGVRHKESLKKMKANVDVLTLSATPIPRTLHMSLSGIRDMSIIEE 794
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP ER P+ T+++ + I+ EL R GQVF+V R++G++E +++ P +
Sbjct: 795 PPQERYPVMTYVTEAKDSIIQDEIQRELTRAGQVFFVYNRVEGIDEMAARIRRLVPDAKV 854
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+AHG+ S QLE T+ F +L+CT I+E+G+DI NANT+I+ D + GL+QLYQ
Sbjct: 855 GVAHGRMSSNQLENTILSFLSKEFDVLVCTTIIETGMDIANANTMIIYDADKMGLSQLYQ 914
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR+ ++ +AYL Y +LS+ A +RL A++E E G GF++A +D+ IRG G +
Sbjct: 915 LRGRVGRSTRQGYAYLMYERNKVLSEVAEKRLKAIKEFTEFGSGFKVAMRDLEIRGAGDV 974
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G QQ G + +G +L+ +ML ++++KV V V+ID+ +N +PS YI
Sbjct: 975 LGAQQHGHMAVIGYELYVKMLNQAIAKVKGQEVEESL--DVEIDLTVNAFIPSSYIEDEM 1032
Query: 510 NPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+EM + A +++D++ + E L ++ P + LLK Y + + + I K+
Sbjct: 1033 IKLEMYKKIAAIDSKEDMY---EVEEELEDRFSDIPRETQTLLKIAYAKVLCRKLKIEKV 1089
Query: 569 YASGKMVGM 577
+G + +
Sbjct: 1090 KQTGSTIDL 1098
>gi|399026147|ref|ZP_10728111.1| transcription-repair coupling factor Mfd [Chryseobacterium sp. CF314]
gi|398076612|gb|EJL67670.1| transcription-repair coupling factor Mfd [Chryseobacterium sp. CF314]
Length = 1121
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/553 (40%), Positives = 339/553 (61%), Gaps = 21/553 (3%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYE 89
LSKL + AW+ K K K ++++ DL++LY R + Y P + E A F YE
Sbjct: 499 LSKLG-SPAWKSLKQKTKAKVKQIAFDLIKLYAQRKTAQGFAYTPDSYLQNELEASFIYE 557
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ+KA +DV++D+ E T MDRL+CGDVGFGKTEVA+RA F + GKQ +L PT
Sbjct: 558 DTPDQEKATIDVKKDM-EASTVMDRLVCGDVGFGKTEVAIRAAFKAATDGKQVAILVPTT 616
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA QH+ ER +P + V ++RF++ +K E L +K G ++II+GTH L+ S V
Sbjct: 617 ILAFQHYRSFKERLKDFP-VNVAYVNRFRTAKQKSETLAALKDGKVDIIIGTHQLVSSSV 675
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL++DEE +FGV K+K+ + K +VD LTL+ATPIPRTL +L RD S+I T
Sbjct: 676 KFKDLGLLIIDEEHKFGVSVKDKLKTLKNNVDTLTLTATPIPRTLQFSLMAARDLSVIKT 735
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PPP R P+ T L F++E + A+ YEL R GQ++++ RI+ L++ +Q+ P +
Sbjct: 736 PPPNRQPVDTQLIGFNEETIRDAVSYELQRDGQIYFINNRIENLKDIAGLIQRLVPDARV 795
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
HGQ +QLE+ + F +G +L+ T IVESG+D+ NANTI + D Q+FG+A L+Q
Sbjct: 796 ITGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANTIFINDAQRFGMADLHQ 855
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ+A KD+ IRG G +
Sbjct: 856 MRGRVGRSNRKAFCYLITPPYDMMTADARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDL 915
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKV-------------DEHCVISVPYKSVQIDINI 496
G +Q+G + +G + + +++ E+L ++ ++ + K V ID ++
Sbjct: 916 LGAEQSGFINEMGFETYQKLMQEALEELKDDEDFENLFDNEEDRQKLFKSVKEVNIDTDL 975
Query: 497 NPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
LP YI++ E + + + AE E+D L +F L ++G P LLK +
Sbjct: 976 ELMLPDFYISNTEERLLLYQKIAEIDNEKD---LQKFESELIDRFGALPKEAVNLLKSVS 1032
Query: 556 VRRMAADIGITKI 568
++ +AADIG KI
Sbjct: 1033 LKWLAADIGFEKI 1045
>gi|77165119|ref|YP_343644.1| transcription-repair coupling factor [Nitrosococcus oceani ATCC
19707]
gi|254433553|ref|ZP_05047061.1| transcription-repair coupling factor [Nitrosococcus oceani AFC27]
gi|76883433|gb|ABA58114.1| transcription-repair coupling factor [Nitrosococcus oceani ATCC
19707]
gi|207089886|gb|EDZ67157.1| transcription-repair coupling factor [Nitrosococcus oceani AFC27]
Length = 1158
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/564 (39%), Positives = 337/564 (59%), Gaps = 9/564 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK-NPAIAEFAAQFPYE 89
L KL + WER K K + ++ + +L+ +Y R +K+ P P + FA FP+E
Sbjct: 552 LHKLG-SNHWERAKRKARERVRDVAAELLAIYAQRAARKKLPLPTPDSHYTAFARAFPFE 610
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ A V DLT + PMDRL+CGDVGFGKTEVA+RA F V AGKQ VL PT
Sbjct: 611 ETPDQADAIQAVIADLTS-DQPMDRLVCGDVGFGKTEVAMRATFIVSQAGKQVAVLVPTT 669
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH+ +RF+ +P +V ++SRF+S+ E+E + I G +I++GTH LL +
Sbjct: 670 LLAQQHYQSFKDRFADWP-ARVEVISRFRSRKEQEAVISGIADGRADIVIGTHKLLQENI 728
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ NLGL+++DEE RFGV+QKE++ + + VD+LTL+ATPIPRTL+++L+ RD S+I+T
Sbjct: 729 RFKNLGLVIIDEEHRFGVRQKERMKALRTEVDILTLTATPIPRTLHMSLSNLRDLSIIAT 788
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP RL IKT + ++ + A+ E+ RGGQV+++ ++ + + +Q FP +
Sbjct: 789 PPARRLAIKTFVRQWNDNLLREALLREIKRGGQVYFLHNEVESINKMAQRVQTLFPEAKV 848
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
IAHGQ R+LE+ M F +LICT I+E+G+DI +ANTII+ + GLAQLYQ
Sbjct: 849 GIAHGQMRERELEQVMLNFYHRRFNVLICTTIIETGIDIPSANTIIIHRADKLGLAQLYQ 908
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR+ A+AYL P +S+++ A++RL A+E ELG GF LA DM IRG G +
Sbjct: 909 LRGRVGRSHHRAYAYLIVPPRSVMTADAIKRLDAIESLEELGAGFTLASHDMEIRGAGEL 968
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV---PYKSVQIDININPRLPSEYIN 506
G+ Q+G + +G DL+ ++L +++ + + + P + ++D++ +P +Y+
Sbjct: 969 LGKDQSGQMQEIGFDLYHDLLERAVNSLKSGQALDLEQPPEQGSEVDLHAPALIPEDYLP 1028
Query: 507 HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGIT 566
+ +V A ++ L + + ++G P + + L +R A +IGI
Sbjct: 1029 DVHT--RLVLYKRIATAKNHQALTELQVEMIDRFGLLPEATKTLFATHELRLKANEIGIR 1086
Query: 567 KIYASGKMVGMKTNMNKKVFKMMI 590
KI A + KV M I
Sbjct: 1087 KIEAGAHGGRIHFQSEPKVDPMAI 1110
>gi|374813985|ref|ZP_09717722.1| transcription-repair coupling factor [Treponema primitia ZAS-1]
Length = 1148
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/572 (38%), Positives = 358/572 (62%), Gaps = 12/572 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE- 81
NE PR + KL + +WE RK + K +++++ L++LY R + +P +
Sbjct: 542 NEGSPPR-MDKLG-SKSWENRKGRVKQSVEEIAEKLIDLYSKRRASRGFAFPADTEWQTM 599
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FP++ T DQ + +++ D+ E+ PMDRLICGDVG+GKTEVA+RA F V GKQ
Sbjct: 600 FEASFPFDETEDQLRCVEEIKDDM-EKPNPMDRLICGDVGYGKTEVAVRACFKAVMGGKQ 658
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
LAPT +LA+QH++ ERFS++P +++G+LSRF ++ + L+ +K G ++I+VGT
Sbjct: 659 VAFLAPTTILAEQHYENFQERFSQFP-VRMGMLSRFVDRSVIRQTLEAVKKGEVDILVGT 717
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H ++ VV+ +LGL+V+DEEQRFGVK KE++ K +VD LTLSATPIPRTL+++L
Sbjct: 718 HRIIQKDVVFKDLGLMVIDEEQRFGVKDKERLKEMKHNVDCLTLSATPIPRTLHMSLLKI 777
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD SL++TPP R PI+T + F+++++ +AI+ E++RGGQVF++ R++ L E ++
Sbjct: 778 RDMSLLATPPNNRHPIETVIDEFNEDRLAAAIRTEVERGGQVFFLHNRVESLNETRLRIE 837
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + + AHGQ + +LE+ M +F G +L+ T I+E+G+DI N NTII+
Sbjct: 838 HLVPEMLVETAHGQMNAHELEDVMHRFIHGGFHVLVSTTIIENGIDIPNVNTIIIDRADM 897
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
+G++QLYQLRGRVGR+D+ A+AYLFYP L++ A++RL + + ELG GF++A KDM
Sbjct: 898 YGVSQLYQLRGRVGRSDRVAYAYLFYPKDRALTELAMKRLQVISDFTELGSGFKIAMKDM 957
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G +Q+GD+ +VG DL+ +L E++ ++ E+ +++ +++ +P
Sbjct: 958 EIRGAGNLLGREQSGDIYSVGFDLYLRLLDEAVHRL-ENSQYEAETETL-LELEYTGFIP 1015
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
+ YI+ + ME+ + ++ + + R +G P LL +R +
Sbjct: 1016 NAYIDGAQEKMEVYKKIASVKTREELENLLGELTDR--FGPPPDEAASLLALAEIRIICR 1073
Query: 562 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSM 593
DI + + G V ++ KV K+ ID +
Sbjct: 1074 DISVFSLKEKGGSVRVEFG---KVSKVKIDRL 1102
>gi|325106020|ref|YP_004275674.1| transcription-repair coupling factor [Pedobacter saltans DSM 12145]
gi|324974868|gb|ADY53852.1| transcription-repair coupling factor [Pedobacter saltans DSM 12145]
Length = 1116
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/541 (39%), Positives = 337/541 (62%), Gaps = 13/541 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQK 95
T AW++ K K ++ + DL++LY R Q + P E A F YE TPDQ+
Sbjct: 506 TEAWDKLKKTTKKKVKDIARDLIKLYAVRKSQVGFAFSPDTYLQNELEASFIYEDTPDQE 565
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
KA DV++D+ E E PMDRL+CGDVGFGKTEVA+RA F + GKQ +L PT +LA QH
Sbjct: 566 KATADVKKDM-ESEHPMDRLVCGDVGFGKTEVAIRAAFKAATEGKQVAILVPTTILAMQH 624
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
+ SER +P +++ ++RF++ + + L+ +K G + I++GTH L+ V + +LG
Sbjct: 625 YKTFSERLKDFP-VRIDYINRFKTTKQVKGTLEALKEGKVEILIGTHRLVAKDVKFKDLG 683
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL++DEEQ+FGV KEK+ F+ +VD LTL+ATPIPRTL+ +L G RD S+I TPPP R
Sbjct: 684 LLIIDEEQKFGVSVKEKLKQFRANVDTLTLTATPIPRTLHFSLMGARDLSIIQTPPPNRQ 743
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P+ T L F+++ + A+++ELDR GQVF++ R+ L + +Q+ P IAIAHGQ
Sbjct: 744 PVDTELHVFNEKLIKEAVEFELDREGQVFFIHNRVADLRQLGGLIQKLVPKARIAIAHGQ 803
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
+LE+ M F +G +L+ T I+E+GLD+ NANTI++ FGL+ L+Q+RGRVG
Sbjct: 804 LEGDKLEDIMLDFIEGKYDVLVATTIIEAGLDVPNANTILINHAHMFGLSDLHQMRGRVG 863
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A YL P S L+ +A +RL+A+EE +LG GF +A +D+ IRG G + G +Q+
Sbjct: 864 RSNKKAFCYLLSPPLSTLTPEARKRLSAIEEFSDLGSGFNVAMRDLDIRGSGNLLGAEQS 923
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISV-------PYKS-VQIDININPRLPSEYINH 507
G + +G D++ ++L E++ ++ + + P+ S QI+ ++ +P EY+ +
Sbjct: 924 GFIAEIGFDMYHKILDEAIQELKDEEFKGLFADEKPRPFVSATQIETDMELLIPDEYVTN 983
Query: 508 LENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITK 567
++ + E K ++ L F + L ++G P + LL+ + ++ + DIG+ K
Sbjct: 984 IQERYNLYTELSKIENKE--ALTTFAQKLEDRFGALPKQVWDLLRTVELQWLGKDIGLEK 1041
Query: 568 I 568
I
Sbjct: 1042 I 1042
>gi|429205500|ref|ZP_19196772.1| transcription-repair coupling factor [Lactobacillus saerimneri 30a]
gi|428146111|gb|EKW98355.1| transcription-repair coupling factor [Lactobacillus saerimneri 30a]
Length = 1186
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/538 (41%), Positives = 342/538 (63%), Gaps = 19/538 (3%)
Query: 41 ERRKTKGKVA--IQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQFPYEPTPDQKKA 97
E +KTK +VA I+ + DL+ LY R +K +P + EF F Y TPDQ ++
Sbjct: 570 EWKKTKHRVANKIEDIADDLIALYAKRDSEKGHAFPPDDDYQREFEDAFAYTETPDQLRS 629
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157
+++ D+ E+ PMDRL+ GDVGFGKTEVALRA F V GKQ +LAPT VLA+QH++
Sbjct: 630 AKEIKADM-EKPKPMDRLLIGDVGFGKTEVALRAAFKAVEDGKQVALLAPTTVLAQQHYE 688
Query: 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217
+ ERF+ +P +++G+LSRF + + +E L ++ G L+IIVGTH LL V + +LGLL
Sbjct: 689 TMIERFNDFP-VEIGILSRFSTSKQVKETLTALREGRLDIIVGTHRLLSKDVQFADLGLL 747
Query: 218 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 277
++DEEQRFGVK KE++ + +VDVLTL+ATPIPRTL +++ G RD S+I TPP R PI
Sbjct: 748 IIDEEQRFGVKHKERLKELRTNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPQNRYPI 807
Query: 278 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 337
+T++ + V+ AI+ EL+RGGQVFY+ R++ +E+ + FL P I HGQ
Sbjct: 808 QTYVIEQNYGVVVDAIRRELERGGQVFYLHNRVEDIEQVVHFLNDLVPEARIVAIHGQMT 867
Query: 338 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 397
QLE T+ F G +L+ T I+E+G+DI N NT++V++ + GL+QLYQLRGRVGR+
Sbjct: 868 EAQLERTLFDFIAGEYDVLVTTTIIETGVDIPNVNTLLVENADRMGLSQLYQLRGRVGRS 927
Query: 398 DKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 457
++ A+AY Y +L++ + +RL A+++ ELG GF++A +D+ IRG G + G+QQ G
Sbjct: 928 NRVAYAYFMYQPNKVLTEVSEKRLEAIKDFTELGSGFKIAMRDLAIRGAGNLLGKQQHGF 987
Query: 458 VGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE 517
+ +VG DL+ EML E+++K V P + +I+++I LP+ YI + +E+
Sbjct: 988 IDSVGYDLYVEMLNEAIAKKRGQHV--TPKTNAEINLDIEGYLPATYIADPQQKIEIYKR 1045
Query: 518 AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 575
+ + + +Q + L ++G+ P ++ LL +IG+ K+YA +V
Sbjct: 1046 ISQFENEAQYREVQ--DDLIDRFGEYPQAVANLL----------EIGLLKVYADQALV 1091
>gi|228471775|ref|ZP_04056548.1| transcription-repair coupling factor [Capnocytophaga gingivalis ATCC
33624]
gi|228276928|gb|EEK15623.1| transcription-repair coupling factor [Capnocytophaga gingivalis ATCC
33624]
Length = 1110
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/560 (39%), Positives = 341/560 (60%), Gaps = 16/560 (2%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQF 86
P L KL ++AW+ K K K ++++ +L++LY R + + P + E A F
Sbjct: 491 PPRLYKLG-SSAWKALKQKTKARVKQIAFNLIQLYAKRREAVGYAFAPDSYLQKELEASF 549
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
YE TPDQ KA L+V++D+ ER PMDRL+CGDVGFGKTEVA+RA F V GKQ VL
Sbjct: 550 IYEDTPDQSKATLEVKQDM-ERARPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLV 608
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA QH+ ER + P ++V L+RF++ EK + L + G ++I++GTH ++
Sbjct: 609 PTTILAFQHYQTFCERLKELP-VRVEYLNRFRTAKEKNQVLADLASGKVDILIGTHQIVN 667
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
+V Y +LGLLV+DEEQ+FGV K+K+ + + ++DVLTL+ATPIPRTL +L RD S+
Sbjct: 668 EKVKYKDLGLLVIDEEQKFGVAVKDKLKTLRENIDVLTLTATPIPRTLQFSLMAARDLSV 727
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPPP R PI++ + +F++E + I YEL RGGQVF++ R++ ++E +Q+ P
Sbjct: 728 ITTPPPNRYPIESQIISFNEEVIRDGIAYELQRGGQVFFIHNRVENIKEVAGMIQRLIPD 787
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
I I HGQ +QLEE M F G IL+ T I+ESGLD+ NANTI + + Q FGL+
Sbjct: 788 AKIGIGHGQMEGKQLEEVMLAFINGDYDILVATTIIESGLDVPNANTIFIHNAQHFGLSD 847
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+Q+RGRVGR++K+A Y P+ S L + + +R+ A+ + +LG G +A KD+ IRG
Sbjct: 848 LHQMRGRVGRSNKKAFCYFITPNLSELPEDSRKRMQAIAQFSDLGSGIHIAMKDLEIRGA 907
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEH---------CVISVPYKSVQIDININ 497
G + G +Q+G + ++G D + ++L E+++++ E+ +V Q+D +
Sbjct: 908 GDLLGGEQSGFINDIGFDAYQKILQEAVTELKENEFAELYADEAQQAVYITDTQLDSDFE 967
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
P YIN + + + NE ++ L Q+ L ++G P LL + ++
Sbjct: 968 LLYPDNYINSITERLNLYNELSNLKNEE--ELSQYEYRLIDRFGALPPQARDLLNSVRIK 1025
Query: 558 RMAADIGITK-IYASGKMVG 576
+A +GI + + GKM+G
Sbjct: 1026 WLATQMGIERLVMKQGKMLG 1045
>gi|392391785|ref|YP_006428387.1| transcription-repair coupling factor Mfd [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390522863|gb|AFL98593.1| transcription-repair coupling factor Mfd [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 1197
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/534 (41%), Positives = 337/534 (63%), Gaps = 17/534 (3%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
+ W++ K+K K AI++M DL++LY R K + P N EF +FPY+ TPDQ +
Sbjct: 595 SEWKKVKSKAKSAIKEMAFDLVKLYAQREATKGYAFSPDNVWQQEFEEKFPYQETPDQMQ 654
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
++V++D+ R+ PMDRL+CGDVG+GKTEVALRA F V +Q VL PT +LA+QHF
Sbjct: 655 CIIEVKQDMM-RQRPMDRLLCGDVGYGKTEVALRAAFKAVMDSRQVAVLVPTTILAQQHF 713
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF YP + + +LSRF+S E++ L +K G ++I+VGTH L+ V + LGL
Sbjct: 714 NTFQERFMGYP-VSIQMLSRFRSAKEQKLILQGLKEGSIDIVVGTHKLVADSVKFKELGL 772
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L+VDEEQRFGV KEK+ + K +VDVLTLSATPIPRTL+++L G RD S+I TPP +R P
Sbjct: 773 LIVDEEQRFGVAHKEKLKTLKTNVDVLTLSATPIPRTLHMSLVGVRDLSVIETPPEDRFP 832
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T+++ F + V AI+ E+ RGGQVF+V R++ +E+ + FL Q P IAHGQ
Sbjct: 833 VQTYVAEFRPDVVREAIRREIQRGGQVFFVHNRVEDMEQVVHFLSQLVPEARYGIAHGQM 892
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
++LE+ M F + +L+CT I+E+GLD+ N NT+I+ + + GL QLYQLRGRVGR
Sbjct: 893 SEKELEQEMLAFLEHESDVLVCTTIIETGLDMPNVNTLIIDEADRLGLGQLYQLRGRVGR 952
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+++ A++Y Y + +L++ A +RLAA+ E E G G ++A +D+ IRG G + G QQ G
Sbjct: 953 SNRRAYSYFLYKPQKVLTEVAEKRLAAIREFTEFGSGLKIAMRDLEIRGAGNLIGAQQHG 1012
Query: 457 DVGNVGVDLFFEMLFESL-----SKVDEHCVISVPYKSVQIDININPRLPSEYINHLENP 511
+ +G +L+ +ML E++ KV+E S I++ ++ LP YI +
Sbjct: 1013 HLAALGFELYSQMLKEAVQEIKGEKVEEKIETS-------IEVQVDAYLPDIYIGERQLK 1065
Query: 512 MEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
+ ++ LM + L ++G P +E LLK + ++ +A+ + I
Sbjct: 1066 AALYQRMVSIDNEEDLSLM--IDELIDRFGTPPREVENLLKIVRIKWIASRMKI 1117
>gi|251794075|ref|YP_003008806.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2]
gi|247541701|gb|ACS98719.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2]
Length = 1175
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/553 (40%), Positives = 347/553 (62%), Gaps = 15/553 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-- 80
+E K P+ ++KL + W R K K + ++Q + DL++LY R Q P + A
Sbjct: 546 SEEKEPK-INKLG-GSEWIRAKNKVRASVQDIADDLIKLYAER--QSAPGFAFGQDTAYQ 601
Query: 81 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 139
EF A FPY+ T DQ +A ++++D+ ++ PMDRL+CGDVG+GKTEVA+RA F G
Sbjct: 602 NEFEAIFPYDETRDQLRAIEEIKKDM-QKPQPMDRLLCGDVGYGKTEVAVRAAFKAAIEG 660
Query: 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 199
KQ +L PT +LA+QH++ ERFS YP + +LSRF+S+ E+ + + +K G +++++
Sbjct: 661 KQVAILVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRSRKEQNDTMKGLKAGTVDVVI 719
Query: 200 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 259
GTH LL V++ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++
Sbjct: 720 GTHRLLSQDVIFKDLGLLIVDEEQRFGVSHKEKLKKLKTNVDVLTLTATPIPRTLHMSML 779
Query: 260 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 319
G RD S+I TPP R P++T++ +S V AI+ EL RGGQV+Y+ R++G+ + +
Sbjct: 780 GVRDLSVIETPPENRFPVQTYVVEYSTSLVREAIERELARGGQVYYLYNRVQGIYQMAEQ 839
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
+ P +A+ HGQ ++LE+T+ F G +L+ T+I+E+G+DI N NT+IV D
Sbjct: 840 INALVPDAKVAVGHGQMSEQELEKTILDFLDGESDVLVSTSIIETGVDIPNVNTLIVHDA 899
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 439
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E ELG GF++A +
Sbjct: 900 DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR 959
Query: 440 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYK---SVQIDIN 495
D+ IRG G + G +Q G + +VG DL+ +ML + ++K E + V + S ID++
Sbjct: 960 DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLADEIAKRKAEMEGVEVKEERRVSTLIDVS 1019
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
I+ LPS+YI +E+ + A I E L ++G P +++ LL
Sbjct: 1020 IDAYLPSDYIYDSIQKIEIYKKV--ATVTSIDEAEDLAEELIDRFGNLPQAVDNLLSVAR 1077
Query: 556 VRRMAADIGITKI 568
++ GI +I
Sbjct: 1078 LKVYGTQYGIEQI 1090
>gi|256618332|ref|ZP_05475178.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
4200]
gi|256597859|gb|EEU17035.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
4200]
Length = 1179
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 326/509 (64%), Gaps = 6/509 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +P + A
Sbjct: 553 FVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAY 610
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F VS
Sbjct: 611 QKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAAFKAVSN 669
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKHG ++I+
Sbjct: 670 NKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKHGQVDIV 728
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL + +++LGLL++DEEQRFGVK KE++ VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLLSQVDVLTLTATPIPRTLHMSM 788
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+ +E ++
Sbjct: 789 LGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDTIERKVE 848
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 849 ELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVEN 908
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 968
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+ID+ I+
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEIDLGIDA 1027
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIW 527
+P YI +E+ + D++
Sbjct: 1028 YIPGTYITDERQKIEIYKRIRQLENMDMY 1056
>gi|89892935|ref|YP_516422.1| hypothetical protein DSY0189 [Desulfitobacterium hafniense Y51]
gi|89332383|dbj|BAE81978.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 1178
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/532 (41%), Positives = 338/532 (63%), Gaps = 7/532 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
+ W++ K K K AI++M DL++LY R K + P N EF +FPY+ TPDQ +
Sbjct: 576 SEWKKVKAKAKSAIKEMAFDLVKLYAQREATKGYAFSPDNVWQQEFEEKFPYQETPDQMQ 635
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
++V++D+ R+ PMDRL+CGDVG+GKTEVALRA F V KQ VL PT +LA+QHF
Sbjct: 636 CIVEVKQDMM-RQRPMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVAVLVPTTILAQQHF 694
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF YP + + +LSRF+S E++ L +K G ++I+VGTH L+ + + +LGL
Sbjct: 695 NTFQERFMGYP-VSIQMLSRFRSAKEQKLILQGLKEGSIDIVVGTHKLVSDSIKFKDLGL 753
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L+VDEEQRFGV KEK+ + K +VDVLTLSATPIPRTL+++L G RD S+I TPP +R P
Sbjct: 754 LIVDEEQRFGVAHKEKLKTLKANVDVLTLSATPIPRTLHMSLVGVRDLSIIETPPEDRFP 813
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T+++ F + V AI+ E+ RGGQVF+V R++ +E+ + FL Q P IAHGQ
Sbjct: 814 VQTYVAEFRPDVVREAIRREIQRGGQVFFVHNRVEDMEQVVHFLSQLVPEARYGIAHGQM 873
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
++LE+ M F + +L+CT I+E+GLD+ N NT+I+ + + GL QLYQLRGRVGR
Sbjct: 874 SEKELEQEMLAFLEHESDVLVCTTIIETGLDMPNVNTLIIDEADRLGLGQLYQLRGRVGR 933
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+++ A++Y Y + +L++ A +RLAA+ E E G G ++A +D+ IRG G + G QQ G
Sbjct: 934 SNRRAYSYFLYKPQKVLTEVAEKRLAAIREFTEFGSGLKIAMRDLEIRGAGNLIGAQQHG 993
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +G +L+ +ML E++ ++ V S I++ ++ LP YI + +
Sbjct: 994 HLAALGFELYSQMLKEAVQELKGEQVEEKIETS--IEVQVDAYLPDIYIGERQLKAALYQ 1051
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
++ +M + L ++G P +E LLK + ++ MA+ + I +I
Sbjct: 1052 RMVAIDNEEDLSMM--IDELIDRFGTPPREVENLLKIVRIKWMASGMKIEQI 1101
>gi|422875429|ref|ZP_16921914.1| transcription-repair coupling factor [Clostridium perfringens F262]
gi|380303609|gb|EIA15910.1| transcription-repair coupling factor [Clostridium perfringens F262]
Length = 1168
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/572 (38%), Positives = 356/572 (62%), Gaps = 12/572 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYE 89
+SKL W++ K K + +I + DL++LY R K + K+ +F +FPYE
Sbjct: 566 ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQWQKQFEDEFPYE 624
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V GKQ L PT
Sbjct: 625 ETPDQLSAIEDIKSDM-ETNKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTT 683
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH+ + +RF+ +P I + ++SRF++K ++ E L +K G+++I++GTH L+ +
Sbjct: 684 ILAEQHYKNMKKRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDI 742
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++LTG RD S+I T
Sbjct: 743 QFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIET 802
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP R PI+T++ + + + AI E++R GQV++V R++ ++E +++Q+ P
Sbjct: 803 PPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESIQEVANYIQELVPECKA 862
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+ HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D + GL+QLYQ
Sbjct: 863 TVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQLYQ 922
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A +D+ IRG G +
Sbjct: 923 LRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNM 982
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++ +PS YI
Sbjct: 983 MGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDAFIPSSYIKDEI 1040
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
+E+ + ++ + ++ E L ++ P ++ L+ Y++ A + I +I
Sbjct: 1041 QKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKSKAKLLNIEEIK 1098
Query: 570 ASGKMV----GMKTNMNKKVFKMMIDSMTSEV 597
+ V + +K++FK++++ ++
Sbjct: 1099 EKNEDVIFIFESRERTDKRIFKVLLEEYKDDI 1130
>gi|410582391|ref|ZP_11319497.1| transcription-repair coupling factor Mfd [Thermaerobacter
subterraneus DSM 13965]
gi|410505211|gb|EKP94720.1| transcription-repair coupling factor Mfd [Thermaerobacter
subterraneus DSM 13965]
Length = 1196
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 237/560 (42%), Positives = 341/560 (60%), Gaps = 15/560 (2%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E +PR L++L + W + K + K ++++M +L+ LY R + + P P +F
Sbjct: 574 EGHQPR-LARLG-SGEWNKVKQRVKESVREMAGELLALYAARQSVRGHAFSPDTPWQRQF 631
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ TPDQ A ++ D+ ER PMDRL+ GDVGFGKTEVA+RA F V GKQ
Sbjct: 632 EDAFPYQETPDQLAAIAAIKADM-ERPVPMDRLLVGDVGFGKTEVAMRAAFKAVQDGKQV 690
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
VL PT VLA QH ERF+ +P + + LSRF S AE+ E L + G ++I++GTH
Sbjct: 691 AVLVPTTVLAYQHERTFKERFAPFP-VTIRTLSRFASPAEQAEILTGLAQGTVDIVIGTH 749
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
L+ V + +LGLL++DEE RFGV KE++ K +VDVLTLSATPIPRTL++AL G R
Sbjct: 750 RLVQPDVRFKDLGLLIIDEEHRFGVAHKERLKQLKQNVDVLTLSATPIPRTLHMALAGIR 809
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S I TPP R P++T + + + V AI+ EL RGGQVFYV R++ + L++
Sbjct: 810 DLSRIDTPPENRFPVQTFVVEWHESLVRDAIQRELRRGGQVFYVHNRVQSIHAVRRRLER 869
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P A+AHGQ +LE M F +G +L+CT I+ESGLDI N NT+IV+D +
Sbjct: 870 LLPEARFAVAHGQMAEGELERVMVDFMEGKADVLVCTTIIESGLDIPNVNTLIVEDADRM 929
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GLAQLYQLRGRVGR+D+ A+AY Y +L++ A +RL A+++ ELG GF+LA +D+
Sbjct: 930 GLAQLYQLRGRVGRSDRVAYAYFTYRRDKVLTEDAQKRLQAIKDFTELGAGFKLALRDLE 989
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G + G +Q G + +VG DL+ ++L E+++++ + K V ID+ ++ +P
Sbjct: 990 IRGAGNLLGAEQHGFMLSVGFDLYTQLLEEAVNELRGRQRPAR-LKPV-IDLVVDAHIPD 1047
Query: 503 EYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 559
YI +E VN AE A+ L + E+L+ +YG P + LL VR++
Sbjct: 1048 NYIRDARQKIEFYKKVNLAETPAD-----LAEVREALQDRYGPPPEPVRNLLALAEVRQL 1102
Query: 560 AADIGITKIYASGKMVGMKT 579
AA G+ +I G + M+
Sbjct: 1103 AARCGVFRIEQQGTRIDMEA 1122
>gi|357040093|ref|ZP_09101883.1| transcription-repair coupling factor [Desulfotomaculum gibsoniae DSM
7213]
gi|355357073|gb|EHG04852.1| transcription-repair coupling factor [Desulfotomaculum gibsoniae DSM
7213]
Length = 1172
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 228/550 (41%), Positives = 334/550 (60%), Gaps = 17/550 (3%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEF 82
E PR LSKL W R K++ + A++ M +L+ LY R + + + EF
Sbjct: 564 EADSPR-LSKLGGAE-WNRVKSRVREAVRDMAQELLALYAARETVRGYAFGSDTVWQKEF 621
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPYE TPDQ +A D +RD+ E PMDRL+CGDVG+GKTEVALRA F V KQ
Sbjct: 622 EGVFPYEETPDQLRAVNDAKRDM-ESPRPMDRLLCGDVGYGKTEVALRAAFKAVMESKQV 680
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
VL PT +LA+QH++ ERF+ YP + V +LSRF++ E+ + + +K G ++I++GTH
Sbjct: 681 AVLVPTTILAQQHYNTFRERFAGYP-VTVEMLSRFRTPREQRQIVQALKEGRIDIVIGTH 739
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
L+ +++ +LGLLVVDEEQRFGV KEK+ + SVDVLTL+ATPIPRTL+++L G R
Sbjct: 740 RLVQEDIIFKDLGLLVVDEEQRFGVSHKEKLKKLRTSVDVLTLTATPIPRTLHMSLVGVR 799
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D SL+ TPP R P++T++ + AI+ EL R GQVFYV R+ L+ +++
Sbjct: 800 DTSLLETPPENRFPVQTYVLEEDPLLIREAIRRELGRDGQVFYVHNRVADLDNVAMWIKG 859
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P I AHGQ +LE+ M F G +L+CT I+ESGLDI N NT+I+++ F
Sbjct: 860 LVPEARIITAHGQMREEELEQIMLDFIDGDYDVLLCTTIIESGLDIPNVNTLIIREANNF 919
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GLAQLYQLRGRVGRA++ A+AYL + +L++ A +RLAA+ E E G G+++A +D+
Sbjct: 920 GLAQLYQLRGRVGRANRLAYAYLTFRKDRVLNEVAEKRLAAIREFTEFGSGYKIAMRDLE 979
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV----DEHCVISVPYKSVQIDININP 498
IRG G + G +Q G + VG DL+ +L E++ + +E V +V +++ +
Sbjct: 980 IRGAGNLLGAEQHGHIAAVGFDLYCRLLEEAVREARGQQEEQPVETV------VELPVEA 1033
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P++YI +EM A+ Q + + E L ++G P ++ LLK +R
Sbjct: 1034 YIPNQYIADANQKVEMYRRI--ASLQRVSTIADLEEELVDRFGDLPREVQNLLKVSRIRV 1091
Query: 559 MAADIGITKI 568
MA + I +
Sbjct: 1092 MAGHLKIKSV 1101
>gi|337286250|ref|YP_004625723.1| transcription-repair coupling factor [Thermodesulfatator indicus DSM
15286]
gi|335359078|gb|AEH44759.1| transcription-repair coupling factor [Thermodesulfatator indicus DSM
15286]
Length = 1167
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 234/554 (42%), Positives = 344/554 (62%), Gaps = 12/554 (2%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFA 83
E K P +L +L + +E RK K + AI+++ +L+ LY R + + P + +
Sbjct: 546 EGKEP-SLDRLGGKS-FEARKKKVQKAIEEVAQELLSLYAARKVGQGFSFEPGPLLRQVE 603
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A FPYE TP+Q A + +D+ ++ TPMDRL+CGDVG+GKTE+A+RA V KQ
Sbjct: 604 ASFPYEETPEQAVAIEETLKDM-QKPTPMDRLVCGDVGYGKTEIAIRAAALAVENKKQVA 662
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+L PT VLA+QHF ER S IKV +LSRF+S E++E L + G ++I+VGTH
Sbjct: 663 ILVPTTVLAEQHFRTFYERLSPL-GIKVAVLSRFKSPKEQKEILKKLAQGEIDIVVGTHR 721
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
LL + V + +LGLL++DEE RFGVK KEKI + +VDVL LSATPIPRTL L+L G RD
Sbjct: 722 LLSNDVSFKDLGLLIIDEEHRFGVKHKEKIKQLRKNVDVLALSATPIPRTLQLSLLGIRD 781
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP +RLPIKT+L+ F ++ + AI+ EL+R GQVF+V RIKG+ D+L++
Sbjct: 782 LSVITTPPEKRLPIKTYLARFDEQVIKEAIERELNRKGQVFFVHNRIKGIYALADWLRRL 841
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P I +AHGQ S++LEE M +F + I +L+CT I+ESG+DI +ANTII+ + G
Sbjct: 842 VPQARIEVAHGQMPSQKLEEIMVRFVRREIDVLVCTTIIESGIDIPSANTIIINRADRMG 901
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
LA++YQLRGRVGR++ +A+AYL P S LS+ A RL AL + ELG GF+LA D+ I
Sbjct: 902 LAEIYQLRGRVGRSNVQAYAYLLVPSLSGLSEDAERRLKALMQFTELGAGFKLAMSDLQI 961
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ--PRLP 501
RG G + G Q+G V VG DL+ E+L ++ ++ + + V+ D+N+ P
Sbjct: 962 RGAGNLLGTFQSGHVAAVGYDLYLEILKHTIDEMRGKPL----EEEVESDVNLKVPAYFP 1017
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
+ YI +E + + A ++ + + + ++G P +E L+K ++ +
Sbjct: 1018 ASYIPDVEQRLHLYRRLALARTRE--AIEELALEIEDRFGILPKEVENLIKLSLLKAILR 1075
Query: 562 DIGITKIYASGKMV 575
+ K+ GK V
Sbjct: 1076 SFKVRKLDRRGKEV 1089
>gi|295090936|emb|CBK77043.1| transcription-repair coupling factor [Clostridium cf. saccharolyticum
K10]
Length = 1185
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/547 (39%), Positives = 345/547 (63%), Gaps = 8/547 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
+ KRP+ L++L + W + KT+ + A++++ DL++LY R +Q+ Y P EF
Sbjct: 565 DAKRPK-LNRLG-GSEWNKTKTRVRGAVKEIAKDLVKLYAARQEQEGFQYGPDTVWQREF 622
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPYE T DQ +A V+RD+ R+ MDRLICGDVG+GKTE+ALRA F + GKQ
Sbjct: 623 EEMFPYEETEDQLEAIDAVKRDMESRKI-MDRLICGDVGYGKTEIALRAAFKAIQEGKQV 681
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
+ L PT +LA+QH++ +R +P ++V +LSRF++ AE++ L+ +K G +++++GTH
Sbjct: 682 VYLVPTTILAQQHYNTFVQRMKDFP-VRVDMLSRFRTPAEQKRTLEDLKKGFVDVLIGTH 740
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
+L V + +LGLL++DEEQRFGV KEKI K +VDV+TL+ATPIPRTL+++L G R
Sbjct: 741 RVLSKDVEFKSLGLLIIDEEQRFGVAHKEKIKKLKENVDVITLTATPIPRTLHMSLIGIR 800
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S++ PP +RLPI+T++ ++ E V AI E+ RGGQV+YV R+ +EE + +
Sbjct: 801 DMSVLEEPPVDRLPIQTYVMEYNDEMVREAINREVARGGQVYYVYNRVNNIEEIANHVAS 860
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P + AHGQ +LE M F G I +L+ T I+E+GL+I NANTII+ D +
Sbjct: 861 LVPDAQVTFAHGQMREHELERIMLDFVNGDIDVLVSTTIIETGLNIPNANTIIIHDADRL 920
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQ+RGRVGR+ + ++A+L Y LL ++A +RL A+ E ELG G ++A +D+
Sbjct: 921 GLSQLYQIRGRVGRSSRTSYAFLMYRRDKLLREEAEKRLQAIREFTELGSGIKIAMRDLE 980
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G I G +Q G + VG DL+ ++L E++ + +++ +D +I+ +P+
Sbjct: 981 IRGAGNILGAEQHGHMEAVGYDLYCKLLNEAVLALKGETEEGAEFETT-VDCDIDAYIPA 1039
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
YI + +++ ++ + MQ + L ++G+ P +E LL+ ++ +A
Sbjct: 1040 SYIKNEYQKLDIYKRISGIESEEEYMDMQ--DELIDRFGEIPGPVENLLRVAALKALAHR 1097
Query: 563 IGITKIY 569
G+T ++
Sbjct: 1098 AGVTDVF 1104
>gi|348027062|ref|YP_004766867.1| transcription-repair coupling factor [Megasphaera elsdenii DSM 20460]
gi|341823116|emb|CCC74040.1| transcription-repair coupling factor [Megasphaera elsdenii DSM 20460]
Length = 1094
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/548 (41%), Positives = 339/548 (61%), Gaps = 9/548 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAE 81
NE P+ L K+ + W++ + K + +I + L+ LY R + Q P P E
Sbjct: 482 NEGDTPK-LQKMGGSD-WQKTRAKAQKSITDLAEKLVALYAKREVVQGYAFPPDTPFQKE 539
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPYE T DQ KA D++ + ER TPMD L+CGDVGFGKTEVA+RAIF V+AGKQ
Sbjct: 540 FEEAFPYEETEDQLKAVRDIKASM-ERPTPMDCLVCGDVGFGKTEVAMRAIFKAVTAGKQ 598
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
VL PT VL++QHF ERF + + V +L+RF+S EK++ L G +++++GT
Sbjct: 599 VAVLVPTTVLSQQHFQTFMERFGPF-GVHVDVLNRFRSYKEKKDILARTLTGDIDVLIGT 657
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
HSLL +V + +LGLLVVDEEQRFGV QKEK ++ ++DVL+LSATPIPRTL+++L
Sbjct: 658 HSLLNKKVKFKDLGLLVVDEEQRFGVAQKEKWKAWAANIDVLSLSATPIPRTLHMSLVNL 717
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
R+ +I TPP +R P++T+++ + V AI E RGGQVF+V R+ +E+ D LQ
Sbjct: 718 REMCVIETPPTDRFPVQTYVTEYDARIVSDAIMREKRRGGQVFFVYNRVATIEKMKDQLQ 777
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P V I IAHGQ LE M F +G +L+C+++VE+GLD+ NANTII+ D
Sbjct: 778 ALLPDVTIGIAHGQMAGSLLESVMFDFYEGKYDVLLCSSLVENGLDVANANTIIIYDADH 837
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
FGL+QLYQ+RGRVGR+ + A+AY Y +LS+ A +RL A++E ELG GF++A +D+
Sbjct: 838 FGLSQLYQMRGRVGRSHRMAYAYFLYRRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDL 897
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G +Q G++ +VG ++ ML ++++K ++ P ++I+++ +
Sbjct: 898 EIRGAGNLLGREQHGNIASVGFAMYCHMLEDAIAKAQTGKDVAPPPPETVMEIHVDAFID 957
Query: 502 SEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
+YI + +EM A ++++++ L Q L +YGK +E LL+ R A
Sbjct: 958 DDYIQNGGQKIEMYQRLAVLSSKEELAGLRQ---ELADRYGKPSQPVEKLLQVTETRLDA 1014
Query: 561 ADIGITKI 568
G+ I
Sbjct: 1015 KAQGLVLI 1022
>gi|302388384|ref|YP_003824206.1| transcription-repair coupling factor [Clostridium saccharolyticum
WM1]
gi|302199012|gb|ADL06583.1| transcription-repair coupling factor [Clostridium saccharolyticum
WM1]
Length = 1179
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/563 (38%), Positives = 349/563 (61%), Gaps = 8/563 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEF 82
+ K+P+ L++L W R KT+ K A++++ +L++LY R + Y ++ EF
Sbjct: 566 DAKKPK-LNRLG-GEQWNRTKTRVKGAVKEIAKELVQLYAARQQTHGFQYGEDTVWQKEF 623
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPYE T DQ A + D+ R+ MDRLICGDVG+GKTE+ALRA F V GKQ
Sbjct: 624 EEMFPYEETEDQWDAIESTKSDMESRKI-MDRLICGDVGYGKTEIALRAAFKAVQDGKQV 682
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
+ L PT +LA+QH++ ++R +P ++V L+SRF++ + ++ L+ +K G ++I++GTH
Sbjct: 683 VYLVPTTILAQQHYNTFAQRMKDFP-VRVDLMSRFRTPGQMKKTLEDLKRGMVDIVIGTH 741
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
+L V + +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL+++L G R
Sbjct: 742 RVLSKDVQFKDLGLLIIDEEQRFGVAHKEKIKQLKENVDVLTLTATPIPRTLHMSLVGIR 801
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S++ PP +R+PI+T++ ++ E V AI EL RGGQV+YV R+ ++E + +
Sbjct: 802 DMSVLEEPPVDRMPIQTYVMEYNDEMVREAIHRELSRGGQVYYVYNRVSNIDEVANHISG 861
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P + AHGQ + +LE M F G I +L+CT I+E+GLDI NANT+I+QD
Sbjct: 862 LVPEAAVTFAHGQMHEHELERIMFDFVNGEIDVLVCTTIIETGLDIPNANTMIIQDADHM 921
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR+ + ++A+L Y LL ++A +RL A+ E ELG G ++A +D+
Sbjct: 922 GLSQLYQLRGRVGRSSRTSYAFLMYKRDKLLKEEAEKRLQAIREFTELGSGIKIAMRDLE 981
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G + G +Q G + VG DL+ ++L +++ ++ Y++V +D +I+ +P+
Sbjct: 982 IRGAGNVLGAEQHGHMEAVGYDLYCKLLNQAVLELKGQRKEEESYETV-VDCDIDAYIPT 1040
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
YI + +++ +D + MQ + L ++G P ++ LLK ++ +A
Sbjct: 1041 SYIKNEYQKLDIYKRISGIENEDEYMDMQ--DELMDRFGDIPKPVDNLLKVASLKALAQS 1098
Query: 563 IGITKIYASGKMVGMKTNMNKKV 585
+T++ + + + + N K+
Sbjct: 1099 AYVTEVNINRQEIRLTMYKNAKL 1121
>gi|187918482|ref|YP_001884045.1| transcription-repair coupling factor [Borrelia hermsii DAH]
gi|119861330|gb|AAX17125.1| transcription-repair coupling factor [Borrelia hermsii DAH]
Length = 1122
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/492 (42%), Positives = 317/492 (64%), Gaps = 21/492 (4%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK-NPAIAEFAAQFPYE 89
L K+S T WE++K K I + L+ LY R K YP+ N F ++F Y+
Sbjct: 525 LDKISSKT-WEKKKANAKKRIDAIADQLVSLYSARESTKGFQYPQDNEWQLLFESEFAYD 583
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ A ++++D+ + MDRL+CGDVGFGKTEVA+RA F V KQ +L+PT
Sbjct: 584 ETPDQLTAISEIKQDMMSLKV-MDRLLCGDVGFGKTEVAMRAAFKAVMGTKQVAILSPTT 642
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QHF+ +RF +P IK+ ++SRF K+++ E + + G ++II+GTH +L ++
Sbjct: 643 ILAEQHFNTFKKRFKNFP-IKIAMMSRFIKKSKEREIIKNLATGEIDIIIGTHKILSKKI 701
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+Y NLGL+++DEEQRFGV++KEK+ K+SVD LTLSATPIPR+L+++L RD S++ T
Sbjct: 702 IYKNLGLIIIDEEQRFGVREKEKLKEIKVSVDCLTLSATPIPRSLHMSLIKLRDISVLKT 761
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP R+ I+T++ FS+ + AI++EL R GQVF+V I+ L+ L++ P I
Sbjct: 762 PPQNRIKIETYVEEFSELLIKHAIEHELSRDGQVFFVHHNIQELDLIKAMLEKVVPYARI 821
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
A H + Q+E M F + ++L+ T I+E+G+DI+NANTII+ + +FGLAQLYQ
Sbjct: 822 ATIHARLTGDQIENIMHDFINKSYQVLLSTTIIENGIDIENANTIIINNANRFGLAQLYQ 881
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR+ ++A AY Y + S L++ A+ERL A+ E ELG GFQ+A KDM IRG G +
Sbjct: 882 LRGRVGRSSQKAFAYFLYKESSSLNESAIERLRAISEFSELGAGFQIAMKDMEIRGVGNL 941
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESL-------SKVDEHCVISVPYKSVQIDININPRLPS 502
G++Q G++ ++G+D + ML +++ SK DE + I+IN N +P
Sbjct: 942 LGKEQHGEIESIGLDYYLTMLNKAIEKRMGKNSKEDE----------ITIEINYNGFIPD 991
Query: 503 EYINHLENPMEM 514
Y+N+ ++ + +
Sbjct: 992 SYVNNEQDKISI 1003
>gi|452990575|emb|CCQ98194.1| transcription-repair coupling factor [Clostridium ultunense Esp]
Length = 1177
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/547 (40%), Positives = 338/547 (61%), Gaps = 17/547 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W+R K K K +++ + DL++LY R K + P P EF A FPY+ T DQ KA
Sbjct: 574 WKRVKNKVKSSVKDIAEDLLKLYAKREAAKGYAFSPDTPYQREFEAMFPYQETEDQLKAI 633
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++RD+ E+ PMDRL+CGDVG+GKTEVA+RA F V GKQ VL PT +LA+QH++
Sbjct: 634 QEIKRDM-EKPRPMDRLLCGDVGYGKTEVAIRAAFKAVLDGKQVAVLVPTTILAQQHYET 692
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
ERF+ + +K+G+LSRF++++E+ E + +++G L+I++GTH LL V + +LGLL+
Sbjct: 693 FKERFADFA-VKIGVLSRFRTRSEQNEIIKELRNGTLDIVIGTHRLLSKDVTFKDLGLLI 751
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
VDEEQRFGV KE+I K +VDVLTL+ATPIPRTL+++L G RD SLI TPP R P++
Sbjct: 752 VDEEQRFGVTHKERIKQLKENVDVLTLTATPIPRTLHMSLIGVRDLSLIETPPENRFPVQ 811
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ +S V AI+ EL R GQVF++ ++G+ + + + P +A+AHGQ
Sbjct: 812 TYVLEYSPSVVKEAIERELARDGQVFFLYNYVQGIYKMAEQISALVPDARVAVAHGQMPE 871
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +L+ T+I+E+G+DI N NT+I+ D GL+QLYQLRGRVGR++
Sbjct: 872 HELETVMLDFLDRNYDVLVSTSIIETGVDIPNVNTLIIYDADHMGLSQLYQLRGRVGRSN 931
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 932 RIAYAYFTYQKGKVLNEAAEKRLEAIKEFTELGSGFKIAMRDLAIRGAGNLLGAEQHGFI 991
Query: 459 GNVGVDLFFEMLFESLSK-----VDEHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML E++S+ V+EH +I + ++ LP YI ++ +
Sbjct: 992 NSVGFDLYNQMLKEAISELKGEVVEEHF-------EPEIVLPLDAYLPEAYIGNVNQKIA 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
+ W ++ + L ++G P +E LL V+ A I +IY
Sbjct: 1045 VYKRFSGVRTLKEWEDLR--DELIDRFGDPPAPVERLLLLTKVKTYAYSFRIKRIYYENG 1102
Query: 574 MVGMKTN 580
+ ++ N
Sbjct: 1103 QIKVEFN 1109
>gi|365905498|ref|ZP_09443257.1| transcription-repair coupling factor [Lactobacillus versmoldensis
KCTC 3814]
Length = 1179
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/493 (41%), Positives = 330/493 (66%), Gaps = 7/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
+E K P+ ++KL W + K K + +I+ + DL++LY R +K P+PK+ + +
Sbjct: 552 SEGKSPK-INKLG-GKEWAKTKRKVQSSIEDIADDLIDLYAKREAEKGHPFPKDDQMQHD 609
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY TPDQ ++ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F V GKQ
Sbjct: 610 FDNAFPYPETPDQLRSVDEIKRDM-EKAHPMDRLLVGDVGFGKTEVALRAAFKAVEDGKQ 668
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+ LAPT +L++QH++ + +RF +P + + +LSRFQ++ E +E ++ ++ G ++I+VGT
Sbjct: 669 VVFLAPTTLLSQQHYETMKDRFEGFP-VNIAVLSRFQTRKESQEIIEKLQTGEIDIVVGT 727
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V ++++GLL++DEEQRFGVK KEKI K +VDVLTL+ATPIPRTL +++ G
Sbjct: 728 HRLLSKDVKFHDIGLLIIDEEQRFGVKHKEKIKELKANVDVLTLTATPIPRTLNMSMLGV 787
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD SLI T P R P++T++ + + V SAIK E++RGGQVFY+ R++ +E+ D +Q
Sbjct: 788 RDLSLIETAPSNRYPVQTYVMEQNFDVVASAIKREMERGGQVFYLHNRVEDMEQVADQIQ 847
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A A+G+ Q+E + + +G +L+ T I+E+G+D+ N NT++V++ +
Sbjct: 848 ALVPEARVATANGRMNQTQMEGVISDYLEGDYDVLVTTTIIETGVDMPNTNTLVVENADR 907
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
+GL+QLYQ+RGRVGR+ + A+AYL Y +L++ +RL A++ ELG GF++A +D+
Sbjct: 908 YGLSQLYQIRGRVGRSSRVAYAYLMYRPNKVLTEVGEKRLEAIKNFTELGSGFKIAMRDL 967
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G+QQ G + +VG DL+ +ML E++++ H + ++++ I+ LP
Sbjct: 968 SIRGAGNLLGKQQHGFIDSVGFDLYSQMLNEAVARKRGHT--KTEKTNSELNLEIDAYLP 1025
Query: 502 SEYINHLENPMEM 514
++YI +E+
Sbjct: 1026 ADYITDERQKVEL 1038
>gi|154492199|ref|ZP_02031825.1| hypothetical protein PARMER_01833 [Parabacteroides merdae ATCC 43184]
gi|423722202|ref|ZP_17696378.1| transcription-repair coupling factor [Parabacteroides merdae
CL09T00C40]
gi|154087424|gb|EDN86469.1| transcription-repair coupling factor [Parabacteroides merdae ATCC
43184]
gi|409242693|gb|EKN35454.1| transcription-repair coupling factor [Parabacteroides merdae
CL09T00C40]
Length = 1167
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/569 (40%), Positives = 348/569 (61%), Gaps = 30/569 (5%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
++ ++ P LSKL T AWE+ K + K ++ + DL+ LY R ++K Y P +
Sbjct: 534 YKGKDSGEPPKLSKLG-TGAWEKMKERTKSKVKDIARDLILLYSKRKQEKGFAYSPDSFM 592
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ KA DV+ D+ E + PMDRLICGDVGFGKTEVA+RA F VS
Sbjct: 593 QHELEASFIYEDTPDQMKATADVKADM-ENDRPMDRLICGDVGFGKTEVAIRAAFKAVSD 651
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ VL PT VLA QH+ SER +P ++ +SR ++ E E L +K G++NII
Sbjct: 652 NKQVAVLVPTTVLAFQHYQTFSERLKDFP-CRIEYISRARTAKEIRETLKDLKEGNINII 710
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH ++G V + +LGLL++DEEQ+FGV KEK+ K +VD LT++ATPIPRTL +L
Sbjct: 711 IGTHRIVGKDVTFKDLGLLIIDEEQKFGVSVKEKLRQLKANVDTLTMTATPIPRTLQFSL 770
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S I+TPPP R P++T + F+ + + AI +E+ R GQVF++ RI+ + E
Sbjct: 771 MGARDLSSITTPPPNRYPVQTEVERFNPDIIREAINFEMSRNGQVFFINNRIQNIYEMEA 830
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+++ P IA+ HGQ +LE+ + F +LI T+IVESG+D+ NANTII+ +
Sbjct: 831 LVKREVPDARIAVGHGQMEPEKLEKIILDFVNYEYDVLIATSIVESGIDVPNANTIIINN 890
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
QQFGL+ L+QLRGRVGR++++A YL P S L+ +A RL A+E ELG G +A
Sbjct: 891 AQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPLSSLTQEARRRLQAIENFSELGSGIHIAM 950
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G +Q+G + ++G + + ++L E++ ++ + + + P
Sbjct: 951 QDLDIRGAGNMLGAEQSGFIADLGYETYQKILEEAVDELKAEEFADLYSNATE----NRP 1006
Query: 499 RLPSEYI--NHLENPMEMV-------NEAEKAA----------EQDIWCLMQFTESLRRQ 539
SEY+ ++E+ +E++ N++E+ + E+DI + FTE L+ +
Sbjct: 1007 DTGSEYVRETYIESDLELMFPPTYIPNDSERVSLYRELDKMEEERDI---LAFTERLKDR 1063
Query: 540 YGKEPYSMEILLKKLYVRRMAADIGITKI 568
+GK P + L++ + +RRMA +G+ K+
Sbjct: 1064 FGKVPKEGKELIRVVRLRRMAKTLGMEKV 1092
>gi|256545180|ref|ZP_05472546.1| transcription-repair coupling factor - superfamily II helicase
[Anaerococcus vaginalis ATCC 51170]
gi|256399221|gb|EEU12832.1| transcription-repair coupling factor - superfamily II helicase
[Anaerococcus vaginalis ATCC 51170]
Length = 1164
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 225/588 (38%), Positives = 353/588 (60%), Gaps = 10/588 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
N+ +P+ +S L + W++ K + K A+ ++ DL+ELY R K K + ++ E
Sbjct: 555 NKGDKPK-ISSLG-SNQWKKAKQRAKKAVDEIADDLVELYAKRSKAKGHAFSEDTTWQKE 612
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F F YE T Q ++ +++ D+ E PMDRL+CGDVG+GKTEVALRA F + G Q
Sbjct: 613 FEDSFIYEETDSQVRSINEIKDDM-ENIKPMDRLLCGDVGYGKTEVALRAAFKAIMDGYQ 671
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA QH+ + ERF YP ++ LLSRF SK E+++++ +K G ++IIVGT
Sbjct: 672 VCFLVPTTILASQHYSTMKERFKDYP-VECALLSRFVSKKEQDKNIKNLKSGKIDIIVGT 730
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL + + + NLGLL++DEEQRFGV+ K+K+ K ++DVLTLSATPIPRTL L+LTG
Sbjct: 731 HRLLSNDIKFKNLGLLIIDEEQRFGVRHKDKLKKLKENIDVLTLSATPIPRTLQLSLTGI 790
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S + PP RLP+ T++ + + AI+ ELDR GQV++V R+ +E+ + L
Sbjct: 791 RDMSTLDEPPERRLPVNTYVLEYDSSIIKRAIEKELDRDGQVYFVYNRVYNIEKIYNELV 850
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P +IAIAHGQ ++ LE+ ME F G I IL+ T I+E+G+DIQN NTIIV D
Sbjct: 851 ELIPDANIAIAHGQMSAKNLEKIMEDFVNGDIDILLATTIIETGMDIQNVNTIIVYDSDM 910
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQL+GR+GR+ + ++AY Y +L++ +RL ++++ + G G+++A +D+
Sbjct: 911 MGLSQLYQLKGRIGRSSRSSYAYFTYAKGKVLTEIGEKRLKSIKDFSDFGSGYKIAMRDL 970
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
+RG G I GE Q+G V +G DL+ + L ++++K S V ID+ ++ +P
Sbjct: 971 ELRGAGNILGESQSGQVEAIGYDLYVKFLQQAVNKASGKEFKSSDLNDVYIDLKVDAYIP 1030
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI +EM + + + + E L +YG P ++ ++ V+ +A
Sbjct: 1031 ESYIEDQGQKIEMYTRISRIETLEDYSFL--VEDLIDRYGDIPLMVDNIMYVSLVKSLAD 1088
Query: 562 DIGITKIY-ASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 608
+G +I +++ + NK F+ + S +E + L+F+ Q
Sbjct: 1089 KLGFDEIREVKNEIIISYDDRNKFTFEQL--SQINENYHGELSFDLSQ 1134
>gi|149371008|ref|ZP_01890603.1| transcription-repair coupling factor [unidentified eubacterium SCB49]
gi|149355794|gb|EDM44352.1| transcription-repair coupling factor [unidentified eubacterium SCB49]
Length = 1115
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/548 (39%), Positives = 330/548 (60%), Gaps = 23/548 (4%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQK 95
+ AW++ K K K ++ + +L+ELY R QK Y P + E + F +E TPDQ
Sbjct: 501 SAAWKKLKQKTKARVKHIAFNLIELYAKRRTQKGFQYNPDSYLQHELESSFMFEDTPDQS 560
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
A DV+ D+ E E PMDRL+CGDVGFGKTEVA+RA F V GKQ +L PT +LA QH
Sbjct: 561 TATADVKADM-ESERPMDRLVCGDVGFGKTEVAVRAAFKAVDNGKQVAILVPTTILAYQH 619
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
F+ SER S P + V L+RF++ E+ L+ +K G ++I++GTH L+ V + +LG
Sbjct: 620 FNTFSERLSGMP-VTVDYLNRFRTAKERRTVLEGLKDGKIDIVIGTHQLVSKSVEFKDLG 678
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL++DEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L RD S+I+TPPP R
Sbjct: 679 LLIIDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLSVITTPPPNRH 738
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P++T + F +E + A++YE+ RGGQ F+V RI ++E +Q+ P I I HGQ
Sbjct: 739 PVETQVVRFEQELIRDAVRYEISRGGQTFFVHNRIDNIKEVAGMIQRLVPDAKIGIGHGQ 798
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
++LE M F +L+ T I+ESGLD+ NANTI + + FGL+ L+Q+RGRVG
Sbjct: 799 MDGKKLEALMLSFMNNEFDVLVATTIIESGLDVSNANTIFINNANNFGLSDLHQMRGRVG 858
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A Y P S ++D A +R+ ALE+ +LG G +A KD+ IRG G + G +Q+
Sbjct: 859 RSNKKAFCYFITPPYSAMTDDARKRMTALEQFSDLGSGINIAMKDLEIRGAGDLLGGEQS 918
Query: 456 GDVGNVGVDLFFEMLFESLSKVDE------HCVISVP------YKSVQIDININPRLPSE 503
G + +G + + ++L E++ ++ E + + P K V ID + P +
Sbjct: 919 GFINEIGFETYQKILAEAIDELKEKEFKDLYADTATPLHDRIFVKEVVIDTDFELLFPDD 978
Query: 504 YINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
Y+N++ + + +NE + AE L++F + L ++G P LL + ++ +A
Sbjct: 979 YVNNITERLNLYTKLNEIKDEAE-----LLKFQKELEDRFGSLPEEAIDLLNSVRIKWIA 1033
Query: 561 ADIGITKI 568
+G+ ++
Sbjct: 1034 IKMGLERV 1041
>gi|423345258|ref|ZP_17322947.1| transcription-repair coupling factor [Parabacteroides merdae
CL03T12C32]
gi|409223044|gb|EKN15981.1| transcription-repair coupling factor [Parabacteroides merdae
CL03T12C32]
Length = 1167
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/569 (40%), Positives = 348/569 (61%), Gaps = 30/569 (5%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
++ ++ P LSKL T AWE+ K + K ++ + DL+ LY R ++K Y P +
Sbjct: 534 YKGKDSGEPPKLSKLG-TGAWEKMKERTKSKVKDIARDLILLYSKRKQEKGFAYSPDSFM 592
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ KA DV+ D+ E + PMDRLICGDVGFGKTEVA+RA F VS
Sbjct: 593 QHELEASFIYEDTPDQMKATADVKADM-ENDRPMDRLICGDVGFGKTEVAIRAAFKAVSD 651
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ VL PT VLA QH+ SER +P ++ +SR ++ E E L +K G++NII
Sbjct: 652 NKQVAVLVPTTVLAFQHYQTFSERLKDFP-CRIEYISRARTAKEIRETLKDLKEGNINII 710
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH ++G V + +LGLL++DEEQ+FGV KEK+ K +VD LT++ATPIPRTL +L
Sbjct: 711 IGTHRIVGKDVTFKDLGLLIIDEEQKFGVSVKEKLRQLKANVDTLTMTATPIPRTLQFSL 770
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S I+TPPP R P++T + F+ + + AI +E+ R GQVF++ RI+ + E
Sbjct: 771 MGARDLSSITTPPPNRYPVQTEVERFNPDIIREAINFEMSRNGQVFFINNRIQNIYEMEA 830
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+++ P IA+ HGQ +LE+ + F +LI T+IVESG+D+ NANTII+ +
Sbjct: 831 LVKREVPDARIAVGHGQMEPEKLEKIILDFVNYEYDVLIATSIVESGIDVPNANTIIINN 890
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
QQFGL+ L+QLRGRVGR++++A YL P S L+ +A RL A+E ELG G +A
Sbjct: 891 AQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPLSSLTQEARRRLQAIENFSELGSGIHIAM 950
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G +Q+G + ++G + + ++L E++ ++ + + + P
Sbjct: 951 QDLDIRGAGNMLGAEQSGFIADLGYETYQKILEEAVDELKAEEFADLYSNATE----NRP 1006
Query: 499 RLPSEYI--NHLENPMEMV-------NEAEKAA----------EQDIWCLMQFTESLRRQ 539
SEY+ ++E+ +E++ N++E+ + E+DI + FTE L+ +
Sbjct: 1007 DTGSEYVRETYIESDLELMFPPTYIPNDSERVSLYRELDKMEEERDI---LAFTERLKDR 1063
Query: 540 YGKEPYSMEILLKKLYVRRMAADIGITKI 568
+GK P + L++ + +RRMA +G+ K+
Sbjct: 1064 FGKVPKEGKELIRVVRLRRMAKTLGMEKV 1092
>gi|260893903|ref|YP_003240000.1| transcription-repair coupling factor [Ammonifex degensii KC4]
gi|260866044|gb|ACX53150.1| transcription-repair coupling factor [Ammonifex degensii KC4]
Length = 1123
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 232/565 (41%), Positives = 341/565 (60%), Gaps = 17/565 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
E +PR LS+L W+R + + K A + +L+ LY R K + P P E
Sbjct: 518 GEGAKPR-LSRLGGGE-WKRVRARVKQAATDVARELLRLYAMRETAKGHAFSPDTPWQRE 575
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPYE TPDQ +A DV+ D+ E+ PMDRLICGDVGFGKTE+ALRA F V GKQ
Sbjct: 576 FEAAFPYEETPDQLRAIADVKADM-EKPRPMDRLICGDVGFGKTEIALRAAFKAVMDGKQ 634
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
VL PT +LA+QH+ S RF+ YP I+V L RFQ+ AE+ E + +K G ++I++GT
Sbjct: 635 VAVLVPTTILAQQHYRTFSSRFAPYP-IRVAWLCRFQTPAEQREVIKGLKAGTIDIVIGT 693
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL + V + +LGL+++DEEQRFGV QKEK+ + VDVLTL+ATPIPRTLY++L G
Sbjct: 694 HRLLQNDVQFRDLGLVIIDEEQRFGVLQKEKLKLLRKEVDVLTLTATPIPRTLYMSLVGL 753
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S ++TPPP+RLP++T++ + AI+ EL RGGQV++V R+ G+ E ++++
Sbjct: 754 RDTSCLTTPPPDRLPVETYVVEEDPAIIREAIRRELARGGQVYFVYNRVAGIVEVANWVK 813
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHGQ LE M F +L+ T IVE+GLDI N NT+IV+D Q
Sbjct: 814 HLVPEARVAYAHGQMPEAALERIMLDFIDHKYDVLVATTIVENGLDIGNVNTLIVKDADQ 873
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR ++ A+AY Y ++++ A RL A+++ LG GF++A++D+
Sbjct: 874 LGLSQLYQLRGRVGRTNRLAYAYFLYRRDKIINEAAKARLRAIKDFTSLGAGFKVAKRDL 933
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G +Q G + VG++L+ +L E++ ++ V VP I++ ++ +P
Sbjct: 934 EIRGAGNLLGTEQHGHIQAVGLELYCRLLQEAIKELKGEEV--VPPVDPVIELTVSAYIP 991
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
+Y+ + +E+ E +A + + E R +YG P LL +R A
Sbjct: 992 DDYVP-FDQKLEIYQELSRAETPE--EVEGLAEGYRDRYGPFPPPFRNLLAVARLRAQAK 1048
Query: 562 DIGITKIYASGKMVGMKTNMNKKVF 586
+ + K++G + + VF
Sbjct: 1049 RLRL-------KLIGRQGGFYRLVF 1066
>gi|168213408|ref|ZP_02639033.1| transcription-repair coupling factor [Clostridium perfringens CPE
str. F4969]
gi|170715029|gb|EDT27211.1| transcription-repair coupling factor [Clostridium perfringens CPE
str. F4969]
Length = 1168
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/572 (38%), Positives = 356/572 (62%), Gaps = 12/572 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYE 89
+SKL W++ K K + +I + DL++LY R K + K+ +F +FPYE
Sbjct: 566 ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQWQKQFEDEFPYE 624
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V GKQ L PT
Sbjct: 625 ETPDQLSAIEDIKSDM-ETNKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTT 683
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH+ + +RF+ +P I + ++SRF++K ++ E L +K G+++I++GTH L+ +
Sbjct: 684 ILAEQHYKNMKKRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDI 742
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++LTG RD S+I T
Sbjct: 743 QFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIET 802
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP R PI+T++ + + + AI E++R GQV++V R++ ++E +++Q+ P
Sbjct: 803 PPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESIQEVANYIQELVPECKA 862
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+ HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D + GL+QLYQ
Sbjct: 863 TVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQLYQ 922
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A +D+ IRG G +
Sbjct: 923 LRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNM 982
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++ +PS YI
Sbjct: 983 MGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDAFIPSSYIKDEI 1040
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
+E+ + ++ + ++ E L ++ P ++ L+ Y++ A + I +I
Sbjct: 1041 QKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKSKAKLLNIEEIK 1098
Query: 570 ASGK----MVGMKTNMNKKVFKMMIDSMTSEV 597
+ + + +K++FK++++ ++
Sbjct: 1099 EKNEDIIFIFESRERTDKRIFKVLLEEYKDDI 1130
>gi|303230285|ref|ZP_07317052.1| transcription-repair coupling factor [Veillonella atypica
ACS-134-V-Col7a]
gi|302515068|gb|EFL57043.1| transcription-repair coupling factor [Veillonella atypica
ACS-134-V-Col7a]
Length = 1096
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 240/552 (43%), Positives = 345/552 (62%), Gaps = 17/552 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAE 81
NE PR + K+ + W + TK + +I + L+ELY R + + P P E
Sbjct: 483 NEGDVPR-IHKMGGSD-WRKAVTKAQKSIDDLADKLVELYAKREITEGFAFLPDQPWQQE 540
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPYE T DQ +A +++ + ER TPMDRL+ GDVGFGKTEVA+RAIF V +GKQ
Sbjct: 541 FEDDFPYEETEDQLQATREIKESM-ERPTPMDRLLAGDVGFGKTEVAMRAIFKAVVSGKQ 599
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
VL PT VLA+QH+ RF+ + +KV +L+RF+S AEK+E L +++G ++I++GT
Sbjct: 600 VAVLVPTTVLAQQHYQTFLNRFNPF-GVKVDVLNRFRSTAEKKEVLKGVENGSIDILIGT 658
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
HSLL +V + +LG LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L G
Sbjct: 659 HSLLNKKVKFKDLGFLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGV 718
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
R+ S+ISTPP +RLP++T++ + + AIK EL RGGQV++V R+ + + L+
Sbjct: 719 REMSVISTPPEDRLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELLE 778
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
QA P + A+AHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D +
Sbjct: 779 QALPDLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADR 838
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEKD 440
GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA +D
Sbjct: 839 LGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-MLSEAAEKRLKAIEEFTELGAGFKLAMRD 897
Query: 441 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 500
+ IRG G + G QQ G++ +VG ++ ML E+++K VI ID+ I+ +
Sbjct: 898 LEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQNKEVIKEVVPDPAIDLEIDAFI 957
Query: 501 PSEYINHLENPME----MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
YI + M+ KA D+ T+ L ++G ++ LL+ +
Sbjct: 958 DDAYIKDSARKISVYQRMLQIKNKAQLDDL------TDELIDRFGTPTDPVDRLLRVAQI 1011
Query: 557 RRMAADIGITKI 568
+ A +GI I
Sbjct: 1012 KEQARLLGIKSI 1023
>gi|182624347|ref|ZP_02952132.1| transcription-repair coupling factor [Clostridium perfringens D str.
JGS1721]
gi|177910565|gb|EDT72938.1| transcription-repair coupling factor [Clostridium perfringens D str.
JGS1721]
Length = 1168
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/572 (38%), Positives = 356/572 (62%), Gaps = 12/572 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYE 89
+SKL W++ K K + +I + DL++LY R K + K+ +F +FPYE
Sbjct: 566 ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQWQKQFEDEFPYE 624
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V GKQ L PT
Sbjct: 625 ETPDQLSAIEDIKSDM-EANKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTT 683
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH+ + +RF+ +P I + ++SRF++K ++ E L +K G+++I++GTH L+ +
Sbjct: 684 ILAEQHYKNMKKRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDI 742
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++LTG RD S+I T
Sbjct: 743 QFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIET 802
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP R PI+T++ + + + AI E++R GQV++V R++ ++E +++Q+ P
Sbjct: 803 PPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESIQEVANYIQELVPECKA 862
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+ HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D + GL+QLYQ
Sbjct: 863 TVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQLYQ 922
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A +D+ IRG G +
Sbjct: 923 LRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNM 982
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++ +PS YI
Sbjct: 983 MGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDAFIPSSYIKDEI 1040
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
+E+ + ++ + ++ E L ++ P ++ L+ Y++ A + I +I
Sbjct: 1041 QKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKSKAKLLNIEEIK 1098
Query: 570 ASGKMV----GMKTNMNKKVFKMMIDSMTSEV 597
+ V + +K++FK++++ ++
Sbjct: 1099 EKNEDVIFIFESRERTDKRIFKVLLEEYKDDI 1130
>gi|219666201|ref|YP_002456636.1| transcription-repair coupling factor [Desulfitobacterium hafniense
DCB-2]
gi|219536461|gb|ACL18200.1| transcription-repair coupling factor [Desulfitobacterium hafniense
DCB-2]
Length = 1197
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/532 (41%), Positives = 338/532 (63%), Gaps = 7/532 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
+ W++ K K K AI++M DL++LY R K + P N EF +FPY+ TPDQ +
Sbjct: 595 SEWKKVKAKAKSAIKEMAFDLVKLYAQREATKGYAFSPDNVWQQEFEEKFPYQETPDQMQ 654
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
++V++D+ R+ PMDRL+CGDVG+GKTEVALRA F V KQ VL PT +LA+QHF
Sbjct: 655 CIVEVKQDMM-RQRPMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVAVLVPTTILAQQHF 713
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF YP + + +LSRF+S E++ L +K G ++I+VGTH L+ + + +LGL
Sbjct: 714 NTFQERFMGYP-VSIQMLSRFRSAKEQKLILQGLKEGSIDIVVGTHKLVSDSIKFKDLGL 772
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L+VDEEQRFGV KEK+ + K +VDVLTLSATPIPRTL+++L G RD S+I TPP +R P
Sbjct: 773 LIVDEEQRFGVAHKEKLKTLKANVDVLTLSATPIPRTLHMSLVGVRDLSIIETPPEDRFP 832
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T+++ F + V AI+ E+ RGGQVF+V R++ +E+ + FL Q P IAHGQ
Sbjct: 833 VQTYVAEFRPDVVREAIRREIQRGGQVFFVHNRVEDMEQVVHFLSQLVPEARYGIAHGQM 892
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
++LE+ M F + +L+CT I+E+GLD+ N NT+I+ + + GL QLYQLRGRVGR
Sbjct: 893 SEKELEQEMLAFLEHESDVLVCTTIIETGLDMPNVNTLIIDEADRLGLGQLYQLRGRVGR 952
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+++ A++Y Y + +L++ A +RLAA+ E E G G ++A +D+ IRG G + G QQ G
Sbjct: 953 SNRRAYSYFLYKPQKVLTEVAEKRLAAIREFTEFGSGLKIAMRDLEIRGAGNLIGAQQHG 1012
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +G +L+ +ML E++ ++ V S I++ ++ LP YI + +
Sbjct: 1013 HLAALGFELYSQMLKEAVQELKGEQVEEKIETS--IEVQVDAYLPDIYIGERQLKAALYQ 1070
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
++ +M + L ++G P +E LLK + ++ MA+ + I +I
Sbjct: 1071 RMVAIDNEEDLSMM--IDELIDRFGTPPREVENLLKIVRIKWMASGMKIEQI 1120
>gi|170763931|ref|ZP_02635347.2| transcription-repair coupling factor [Clostridium perfringens B str.
ATCC 3626]
gi|170764087|ref|ZP_02631749.2| transcription-repair coupling factor [Clostridium perfringens E str.
JGS1987]
gi|170662722|gb|EDT15405.1| transcription-repair coupling factor [Clostridium perfringens E str.
JGS1987]
gi|170712080|gb|EDT24262.1| transcription-repair coupling factor [Clostridium perfringens B str.
ATCC 3626]
Length = 1168
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/572 (38%), Positives = 356/572 (62%), Gaps = 12/572 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYE 89
+SKL W++ K K + +I + DL++LY R K + K+ +F +FPYE
Sbjct: 566 ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQWQKQFEDEFPYE 624
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V GKQ L PT
Sbjct: 625 ETPDQLSAIEDIKSDM-EANKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTT 683
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH+ + +RF+ +P I + ++SRF++K ++ E L +K G+++I++GTH L+ +
Sbjct: 684 ILAEQHYKNMKKRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDI 742
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++LTG RD S+I T
Sbjct: 743 QFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIET 802
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP R PI+T++ + + + AI E++R GQV++V R++ ++E +++Q+ P
Sbjct: 803 PPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESIQEVANYIQELVPECKA 862
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+ HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D + GL+QLYQ
Sbjct: 863 TVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQLYQ 922
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A +D+ IRG G +
Sbjct: 923 LRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNM 982
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++ +PS YI
Sbjct: 983 MGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDAFIPSSYIKDEI 1040
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
+E+ + ++ + ++ E L ++ P ++ L+ Y++ A + I +I
Sbjct: 1041 QKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKSKAKLLNIEEIK 1098
Query: 570 ASGKMV----GMKTNMNKKVFKMMIDSMTSEV 597
+ V + +K++FK++++ ++
Sbjct: 1099 EKNEDVIFIFESRERTDKRIFKVLLEEYKDDI 1130
>gi|326790211|ref|YP_004308032.1| transcription-repair coupling factor [Clostridium lentocellum DSM
5427]
gi|326540975|gb|ADZ82834.1| transcription-repair coupling factor [Clostridium lentocellum DSM
5427]
Length = 1179
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 234/585 (40%), Positives = 357/585 (61%), Gaps = 10/585 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K P+ LSKL + W++ K K K AIQ + +L++LY R + Y ++ E
Sbjct: 569 SEGKAPK-LSKLGGSE-WKKSKAKVKGAIQNIAKELVKLYSQRQYSRGFCYEEDTIWQKE 626
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPYE T DQ +A DV++D+ E + MDRLICGDVG+GKTEVA+RA F V KQ
Sbjct: 627 FEAMFPYEETGDQLEAIEDVKKDM-ESDKIMDRLICGDVGYGKTEVAIRAAFKAVQNSKQ 685
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH+ +ER + YP I + LLSRF++ + ++ L+ + G ++IIVGT
Sbjct: 686 VAYLVPTTILAQQHYQRFAERMADYP-ITIELLSRFRTPKQIKKSLEGLASGKVDIIVGT 744
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V + +LGL+++DEEQRFGV KEK+ + VDV+ L+ATPIPRTL+++L G
Sbjct: 745 HRLLSKDVQFKDLGLVIIDEEQRFGVTHKEKLKQLRTQVDVMNLTATPIPRTLHMSLIGI 804
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S++ P ER P++T++ +S++ + AI EL RGGQV+++ ++K +EE +Q
Sbjct: 805 RDMSVLEEAPVERKPVQTYVIEYSEDFIKDAINRELTRGGQVYFLHNQVKDIEEKAHAIQ 864
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P +A AHGQ R+LE+ M +F +G I +L+CT I+E+GLDI NANTII+ +
Sbjct: 865 ELIPKARVAFAHGQMSERELEQIMLRFIEGEIDVLVCTTIIETGLDISNANTIIMNHADR 924
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+ + +AYL Y +L + A +RL A+++ ELG GF++A +D+
Sbjct: 925 MGLSQLYQLRGRVGRSSRMGYAYLMYQKDKVLKEVAEKRLQAIKQFTELGAGFKIAMRDL 984
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + ++G DL+ +ML E +S+ ++ Y++ I+I +N +P
Sbjct: 985 EIRGAGNLLGAQQHGHMESIGYDLYCKMLAEVVSEE-RGEEVAEEYETT-IEIKLNAYIP 1042
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI +++ + + + +Q E + +YG P ++ LL ++ MA
Sbjct: 1043 GSYIPDEIQKLDIYKKIASIKNETDYLDVQ--EEIEDRYGNIPVAVYNLLDIALIKAMAH 1100
Query: 562 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 606
D+ I + + K V K N + + + E RN L F G
Sbjct: 1101 DLYIILVSENNKHVTFKFKENAPLNAEKVPEILKEYGRN-LKFVG 1144
>gi|291087006|ref|ZP_06345122.2| transcription-repair coupling factor [Clostridium sp. M62/1]
gi|291076614|gb|EFE13978.1| transcription-repair coupling factor [Clostridium sp. M62/1]
Length = 1187
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/547 (39%), Positives = 345/547 (63%), Gaps = 8/547 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
+ KRP+ L++L + W + KT+ + A++++ DL++LY R +Q+ Y P EF
Sbjct: 567 DAKRPK-LNRLG-GSEWNKTKTRVRGAVKEIAKDLVKLYAARQEQEGFQYGPDTVWQREF 624
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPYE T DQ +A V+RD+ R+ MDRLICGDVG+GKTE+ALRA F + GKQ
Sbjct: 625 EEMFPYEETEDQLEAIDAVKRDMESRKI-MDRLICGDVGYGKTEIALRAAFKAIQEGKQV 683
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
+ L PT +LA+QH++ +R +P ++V +LSRF++ AE++ L+ +K G +++++GTH
Sbjct: 684 VYLVPTTILAQQHYNTFVQRMKDFP-VRVDMLSRFRTPAEQKRTLEDLKKGFVDVLIGTH 742
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
+L V + +LGLL++DEEQRFGV KEKI K +VDV+TL+ATPIPRTL+++L G R
Sbjct: 743 RVLSKDVEFKSLGLLIIDEEQRFGVAHKEKIKKLKENVDVITLTATPIPRTLHMSLIGIR 802
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S++ PP +RLPI+T++ ++ E V AI E+ RGGQV+YV R+ +EE + +
Sbjct: 803 DMSVLEEPPVDRLPIQTYVMEYNDEMVREAINREVARGGQVYYVYNRVNNIEEIANHVAS 862
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P + AHGQ +LE M F G I +L+ T I+E+GL+I NANTII+ D +
Sbjct: 863 LVPDAQVTFAHGQMREHELERIMLDFVNGDIDVLVSTTIIETGLNIPNANTIIIHDADRL 922
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQ+RGRVGR+ + ++A+L Y LL ++A +RL A+ E ELG G ++A +D+
Sbjct: 923 GLSQLYQIRGRVGRSSRTSYAFLMYRRDKLLREEAEKRLQAIREFTELGSGIKIAMRDLE 982
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G I G +Q G + VG DL+ ++L E++ + +++ +D +I+ +P+
Sbjct: 983 IRGAGNILGAEQHGHMEAVGYDLYCKLLNEAVLALKGETEEGAEFETT-VDCDIDAYIPA 1041
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
YI + +++ ++ + MQ + L ++G+ P +E LL+ ++ +A
Sbjct: 1042 SYIKNEYQKLDIYKRISGIESEEEYMDMQ--DELIDRFGEIPGPVENLLRVAALKALAHR 1099
Query: 563 IGITKIY 569
G+T ++
Sbjct: 1100 AGVTDVF 1106
>gi|423075756|ref|ZP_17064470.1| transcription-repair coupling factor [Desulfitobacterium hafniense
DP7]
gi|361853168|gb|EHL05349.1| transcription-repair coupling factor [Desulfitobacterium hafniense
DP7]
Length = 1197
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/532 (41%), Positives = 338/532 (63%), Gaps = 7/532 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
+ W++ K K K AI++M DL++LY R K + P N EF +FPY+ TPDQ +
Sbjct: 595 SEWKKVKAKAKSAIKEMAFDLVKLYAQREATKGYAFSPDNVWQQEFEEKFPYQETPDQMQ 654
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
++V++D+ R+ PMDRL+CGDVG+GKTEVALRA F V KQ VL PT +LA+QHF
Sbjct: 655 CIVEVKQDMM-RQRPMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVAVLVPTTILAQQHF 713
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF YP + + +LSRF+S E++ L +K G ++I+VGTH L+ + + +LGL
Sbjct: 714 NTFQERFMGYP-VSIQMLSRFRSAKEQKLILQGLKEGSIDIVVGTHKLVSDSIKFKDLGL 772
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L+VDEEQRFGV KEK+ + K +VDVLTLSATPIPRTL+++L G RD S+I TPP +R P
Sbjct: 773 LIVDEEQRFGVAHKEKLKTLKANVDVLTLSATPIPRTLHMSLVGVRDLSIIETPPEDRFP 832
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T+++ F + V AI+ E+ RGGQVF+V R++ +E+ + FL Q P IAHGQ
Sbjct: 833 VQTYVAEFRPDVVREAIRREIQRGGQVFFVHNRVEDMEQVVHFLSQLVPEARYGIAHGQM 892
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
++LE+ M F + +L+CT I+E+GLD+ N NT+I+ + + GL QLYQLRGRVGR
Sbjct: 893 SEKELEQEMLAFLEHESDVLVCTTIIETGLDMPNVNTLIIDEADRLGLGQLYQLRGRVGR 952
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+++ A++Y Y + +L++ A +RLAA+ E E G G ++A +D+ IRG G + G QQ G
Sbjct: 953 SNRRAYSYFLYKPQKVLTEVAEKRLAAIREFTEFGSGLKIAMRDLEIRGAGNLIGAQQHG 1012
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +G +L+ +ML E++ ++ V S I++ ++ LP YI + +
Sbjct: 1013 HLAALGFELYSQMLKEAVQELKGEQVEEKIETS--IEVQVDAYLPDIYIGERQLKAALYQ 1070
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
++ +M + L ++G P +E LLK + ++ MA+ + I +I
Sbjct: 1071 RMVAIDNEEDLSMM--IDELIDRFGTPPREVENLLKIVRIKWMASGMKIEQI 1120
>gi|339449333|ref|ZP_08652889.1| transcription-repair coupling factor [Lactobacillus fructivorans KCTC
3543]
Length = 1179
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 238/628 (37%), Positives = 376/628 (59%), Gaps = 24/628 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K P+ ++KL T W + K ++ + DL++LY R + +P + E
Sbjct: 555 SEDKHPK-INKLG-GTEWAKTKRSVASKVEDIADDLVDLYAKREAESGYAFPVDDQYQTE 612
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY TPDQ ++ ++++D+ E PMDRL+ GDVG+GKTEVALRA F V AGKQ
Sbjct: 613 FEQAFPYTETPDQIRSTDEIKKDM-ESPHPMDRLLVGDVGYGKTEVALRAAFKAVEAGKQ 671
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT VLA+QH++ + ERF +P +KVG+LSRF + + + + +K G ++I+VGT
Sbjct: 672 VAFLVPTTVLAQQHYETMIERFDGFP-VKVGVLSRFDTPKQTRQTIQDLKDGKIDIVVGT 730
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V +N+LGLL+VDEEQRFGVK KEKI + +VDVLTL+ATPIPRTL +++ G
Sbjct: 731 HRLLSKDVKFNDLGLLIVDEEQRFGVKHKEKIKELRSNVDVLTLTATPIPRTLNMSMMGV 790
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ ++ ++ I+ E+ RGGQVFY+ R+K +++ +D LQ
Sbjct: 791 RDLSVIETPPANRYPIQTYVMEQNEGSIVDGIRREMQRGGQVFYLHNRVKDIDQTVDKLQ 850
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P IA +GQ ++E + F G +L+ T I+E+G+DI NANT+ V+D +
Sbjct: 851 TLLPDARIASINGQMSENEMEGILYDFVNGDYDVLVTTTIIETGVDIPNANTLFVEDADR 910
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQ+RGR+GR+++ AY Y +L++ + RL A+++ ELG GF++A +D+
Sbjct: 911 MGLSQLYQIRGRIGRSNRVGQAYFMYQPNKVLTEVSENRLEAIKDFTELGSGFKVAMRDL 970
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRL 500
IRG G + G+QQ G + +VG D++ +ML +++SK +H V V ++++ I L
Sbjct: 971 SIRGAGNVLGKQQHGFINSVGYDMYTKMLSDAVSKKKGQHRV--VEKSDSKVELGIEAYL 1028
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTE---SLRRQYGKEPYSMEILLKKLYVR 557
PS YI + +E+ + +D QFTE L ++G+ P + LL+ ++
Sbjct: 1029 PSTYIEDQQQKIELYKRIRQMDSED-----QFTELQSDLIDRFGEYPVEVANLLEIDRIK 1083
Query: 558 RMAADIGITKIYA--SGKMVGM-KTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELL 614
+A I KI S MV + KT K K ++ ++ R+++ + + +L+
Sbjct: 1084 MLADYDLIEKIRKDQSNLMVTVSKTGTQKFTSKDILKAIADTDFRSAVKVVDGRYQIKLV 1143
Query: 615 LELPREQLLNWIFQCLAELYASLPALIK 642
++ P + +W L++LY + L K
Sbjct: 1144 VQ-PTMKDKDW----LSQLYKFVSGLSK 1166
>gi|291522023|emb|CBK80316.1| transcription-repair coupling factor [Coprococcus catus GD/7]
Length = 1178
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 230/537 (42%), Positives = 336/537 (62%), Gaps = 21/537 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA---EFAAQFPYEPTPDQKK 96
W R KTK K A++++ +DL++LY R Q+ Y P EF FPYE T DQ
Sbjct: 578 WTRTKTKVKGAVRELAMDLVKLYAAR--QESEGYVCGPDTVWQREFEEMFPYEETQDQLD 635
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A +RD+ E MDRL+CGDVGFGKTEVA+RA F +V G+Q VL PT +LA+QH+
Sbjct: 636 AIEATKRDM-ESTKIMDRLVCGDVGFGKTEVAIRAAFKMVQEGRQCAVLVPTTILAQQHY 694
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ +R +YP + +GLLSRF++KAE+++ L+ +K G ++I++GTH LL V + NLGL
Sbjct: 695 NTFCQRMKEYP-VNIGLLSRFRTKAEQKKTLEDLKAGRVDIVIGTHRLLSKDVEFKNLGL 753
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
LVVDEEQRFGV KEKI K +VDVLTL+ATPIPRT++++L G RD SL+ P +R P
Sbjct: 754 LVVDEEQRFGVTHKEKIKKIKENVDVLTLTATPIPRTMHMSLIGIRDMSLLEEAPVDRQP 813
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+T++ ++ E + AI EL RGGQV+YV R+ G++E L + P +A AHGQ
Sbjct: 814 IQTYVMEYNDELIREAIMRELARGGQVYYVYNRVNGIDEIAAGLSELVPDASVAYAHGQM 873
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
R+LE+ M +F G I +L+ T I+E+GLDI N NT+I+ D + GL+QLYQLRGRVGR
Sbjct: 874 SERELEKIMYQFINGEIDVLVSTTIIETGLDISNVNTMIIHDADKLGLSQLYQLRGRVGR 933
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+++ ++A+L Y +L + A +RL+A+ E ELG G+++A +D+ IRG G + GE+Q+G
Sbjct: 934 SNRTSYAFLMYKRDKMLKEVAEKRLSAIREFTELGSGYRIAMRDLEIRGAGNLLGERQSG 993
Query: 457 DVGNVGVDLFFEMLFESL-----SKVDEHCVISVPYKSVQIDININPRLPSEYINHLENP 511
+ VG DL+ +ML +++ K+ E SV DI+I+ +PS YI +
Sbjct: 994 HMEAVGYDLYCKMLNQAVMEAKGEKIQEDFETSV-------DIDIDAFIPSAYIKNEFQK 1046
Query: 512 MEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
++M D + M + L ++G+ P LL +R A G+ ++
Sbjct: 1047 LDMYKRIASIQNADEYGEM--LDELIDRFGELPKPAANLLLVALIRAEAHAAGVVQL 1101
>gi|392531776|ref|ZP_10278913.1| transcription-repair coupling factor [Carnobacterium maltaromaticum
ATCC 35586]
Length = 1177
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/539 (41%), Positives = 339/539 (62%), Gaps = 20/539 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
+ ++ K P+ ++KL T W + K K I+ + DL+ELY R + + P +P
Sbjct: 553 YVSSDAKTPK-INKLGGT-EWAKTKKKVAAKIEDIADDLIELYAAREAEVGFAFSPDSPY 610
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E + PMDRL+ GDVG+GKTEVA+RAIF V
Sbjct: 611 QQEFENAFPYTETDDQLRSTAEIKHDM-ESKKPMDRLLVGDVGYGKTEVAMRAIFKAVQD 669
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQA L PT +LA+QH++ + +RF +P +++GLLSRF++K ++ E +D +K G ++++
Sbjct: 670 GKQAAFLVPTTILAQQHYESLVQRFEDFP-VEIGLLSRFRTKKQQNETMDGLKKGLVDVV 728
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +L + + +LGLL+VDEEQRFGVK KEK+ K VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRILSKDIEFLDLGLLIVDEEQRFGVKHKEKLKQLKAQVDVLTLTATPIPRTLHMSM 788
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + AI+ EL RGGQVFY+ R++ + + ++
Sbjct: 789 LGVRDLSVIETPPANRYPVQTYVMEQNPGAIREAIERELTRGGQVFYLYNRVETIGKKVE 848
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE + +F +G +L+ T I+E+G+DI N NT+ V++
Sbjct: 849 ELQMLVPDAKIAYAHGQMTEAQLESILYQFVEGEYDVLVTTTIIETGVDIPNVNTLFVEN 908
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+QLYQLRGRVGR+++ A+AY Y +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADHMGLSQLYQLRGRVGRSNRVAYAYFMYQPDKVLTEVSEKRLQAIKDFTELGSGFKIAM 968
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFES------LSKVDEHCVISVPYKSVQI 492
+D+ IRG G + G QQ G + +VG DL+ EML E+ L K DE V V+I
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDLYSEMLSEAVVRKRGLEKKDEKTV-------VEI 1021
Query: 493 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
D+ IN LPS YI +E+ + ++D + +Q + L ++G P + LL
Sbjct: 1022 DLGINAYLPSTYIEDERQKIEIYKRIRELTDRDEYTTLQ--DDLIDRFGVFPDEVADLL 1078
>gi|110799729|ref|YP_697172.1| transcription-repair coupling factor [Clostridium perfringens ATCC
13124]
gi|110674376|gb|ABG83363.1| transcription-repair coupling factor [Clostridium perfringens ATCC
13124]
Length = 1162
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/572 (38%), Positives = 356/572 (62%), Gaps = 12/572 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYE 89
+SKL W++ K K + +I + DL++LY R K + K+ +F +FPYE
Sbjct: 560 ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQWQKQFEDEFPYE 618
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V GKQ L PT
Sbjct: 619 ETPDQLSAIEDIKSDM-ETNKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTT 677
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH+ + +RF+ +P I + ++SRF++K ++ E L +K G+++I++GTH L+ +
Sbjct: 678 ILAEQHYKNMKKRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDI 736
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++LTG RD S+I T
Sbjct: 737 QFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIET 796
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP R PI+T++ + + + AI E++R GQV++V R++ ++E +++Q+ P
Sbjct: 797 PPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESIQEVANYIQELVPECKA 856
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+ HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D + GL+QLYQ
Sbjct: 857 TVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQLYQ 916
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A +D+ IRG G +
Sbjct: 917 LRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNM 976
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++ +PS YI
Sbjct: 977 MGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDAFIPSSYIKDEI 1034
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
+E+ + ++ + ++ E L ++ P ++ L+ Y++ A + I +I
Sbjct: 1035 QKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKSKAKLLNIEEIK 1092
Query: 570 ASGK----MVGMKTNMNKKVFKMMIDSMTSEV 597
+ + + +K++FK++++ ++
Sbjct: 1093 EKNEDIIFIFESRERTDKRIFKVLLEEYKDDI 1124
>gi|414082572|ref|YP_006991272.1| transcription-repair coupling factor [Carnobacterium maltaromaticum
LMA28]
gi|412996148|emb|CCO09957.1| transcription-repair coupling factor [Carnobacterium maltaromaticum
LMA28]
Length = 1177
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/539 (41%), Positives = 339/539 (62%), Gaps = 20/539 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
+ ++ K P+ ++KL T W + K K I+ + DL+ELY R + + P +P
Sbjct: 553 YVSSDAKTPK-INKLGGT-EWAKTKKKVAAKIEDIADDLIELYAAREAEVGFAFSPDSPY 610
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E + PMDRL+ GDVG+GKTEVA+RAIF V
Sbjct: 611 QQEFENAFPYTETDDQLRSTAEIKHDM-ESKKPMDRLLVGDVGYGKTEVAMRAIFKAVQD 669
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQA L PT +LA+QH++ + +RF +P +++GLLSRF++K ++ E +D +K G ++++
Sbjct: 670 GKQAAFLVPTTILAQQHYESLVQRFEDFP-VEIGLLSRFRTKKQQNETMDGLKKGLVDVV 728
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +L + + +LGLL+VDEEQRFGVK KEK+ K VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRILSKDIEFLDLGLLIVDEEQRFGVKHKEKLKQLKAQVDVLTLTATPIPRTLHMSM 788
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + AI+ EL RGGQVFY+ R++ + + ++
Sbjct: 789 LGVRDLSVIETPPANRYPVQTYVMEQNPGAIREAIERELTRGGQVFYLYNRVETIGKKVE 848
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P IA AHGQ QLE + +F +G +L+ T I+E+G+DI N NT+ V++
Sbjct: 849 ELQMLVPDAKIAYAHGQMTEAQLESILYQFVEGEYDVLVTTTIIETGVDIPNVNTLFVEN 908
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+QLYQLRGRVGR+++ A+AY Y +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADHMGLSQLYQLRGRVGRSNRVAYAYFMYQPDKVLTEVSEKRLQAIKDFTELGSGFKIAM 968
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFES------LSKVDEHCVISVPYKSVQI 492
+D+ IRG G + G QQ G + +VG DL+ EML E+ L K DE V V+I
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDLYSEMLSEAVVRKRGLEKKDEKTV-------VEI 1021
Query: 493 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
D+ IN LPS YI +E+ + ++D + +Q + L ++G P + LL
Sbjct: 1022 DLGINAYLPSTYIEDERQKIEIYKRIRELTDRDEYTTLQ--DDLIDRFGVFPDEVADLL 1078
>gi|258513568|ref|YP_003189790.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans
DSM 771]
gi|257777273|gb|ACV61167.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans
DSM 771]
Length = 1197
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 230/543 (42%), Positives = 340/543 (62%), Gaps = 16/543 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQFPYE 89
LS+L W R K+K K A+++M +L+ LY R + P+ K+ EF A FPYE
Sbjct: 596 LSRLGGA-EWSRVKSKVKEAVKEMAQELLALYAAREAVQGHPFSKDTVWQQEFEAAFPYE 654
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ KA +V+ D+ ER PMDRL+CGDVG+GKTEVALRA F V GKQ VL PT
Sbjct: 655 ETPDQLKAIEEVKADM-ERPRPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVLVPTT 713
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QHF+ ERF+KYP + + +LSRF + + + + + G ++I++GTH L+ +
Sbjct: 714 ILAQQHFNTFKERFAKYP-VNIAMLSRFITARRQRQIVQELLLGQVDIVIGTHRLVQDDI 772
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGL+VVDEEQRFGV KEK+ + +VDVLTL+ATPIPRTL++++ G RD SL+ T
Sbjct: 773 KFKDLGLVVVDEEQRFGVTHKEKLKQLRQNVDVLTLTATPIPRTLHMSIVGVRDTSLLET 832
Query: 270 PPPERLPIKTHLSAFSKEKVI--SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGV 327
PP +R+P++T++ +E VI AI+ EL RGGQV+YV R+ L+ +L+ P
Sbjct: 833 PPEDRIPVQTYV--LEEEPVIVREAIRRELGRGGQVYYVHNRVADLDRVAGWLKGLVPDA 890
Query: 328 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 387
IAI HGQ +LE M F IL+CT I+E+GLDIQN NT+IV+D GLAQL
Sbjct: 891 AIAIGHGQMKEDRLENVMLDFMNKKFDILLCTTIIETGLDIQNVNTLIVKDADYMGLAQL 950
Query: 388 YQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFG 447
YQLRGRVGR ++ A+AY + ++S+ A +RL+A+ E E G G+++A +D+ IRG G
Sbjct: 951 YQLRGRVGRTNRLAYAYCTFRGDKVMSELAEKRLSAVREFTEFGSGYKIAMRDLEIRGAG 1010
Query: 448 TIFGEQQTGDVGNVGVDLFFEMLFESL--SKVDEHCVISVPYKSVQIDININPRLPSEYI 505
I G +Q G + VG DL+ +L E++ +K E+ + P +++ +++ + +P EY+
Sbjct: 1011 NILGPEQHGHIAAVGFDLYCRLLEEAVLEAKGGEN---AKPIETL-VELPVTAYIPDEYV 1066
Query: 506 NHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
L +E+ A +DI L + + L ++G P + LL ++ +A ++ I
Sbjct: 1067 IDLNQKVELYKRM--ANIRDIKMLSEMEDELIDRFGDIPEPVLNLLAVTRIKALAVNLKI 1124
Query: 566 TKI 568
I
Sbjct: 1125 KNI 1127
>gi|429760982|ref|ZP_19293425.1| transcription-repair coupling factor [Veillonella atypica KON]
gi|429175881|gb|EKY17296.1| transcription-repair coupling factor [Veillonella atypica KON]
Length = 1096
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 240/552 (43%), Positives = 345/552 (62%), Gaps = 17/552 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAE 81
NE PR + K+ + W + TK + +I + L+ELY R + + P P E
Sbjct: 483 NEGDVPR-IHKMGGSD-WRKAVTKAQKSIDDLADKLVELYAKREITEGFAFLPDQPWQQE 540
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPYE T DQ +A +++ + ER TPMDRL+ GDVGFGKTEVA+RAIF V +GKQ
Sbjct: 541 FEDAFPYEETEDQLQATREIKESM-ERPTPMDRLLAGDVGFGKTEVAMRAIFKAVVSGKQ 599
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
VL PT VLA+QH+ RF+ + +KV +L+RF+S AEK+E L +++G ++I++GT
Sbjct: 600 VAVLVPTTVLAQQHYQTFLNRFNPF-GVKVDVLNRFRSTAEKKEVLKGVENGSIDILIGT 658
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
HSLL +V + +LG LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L G
Sbjct: 659 HSLLNKKVKFKDLGFLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGV 718
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
R+ S+ISTPP +RLP++T++ + + AIK EL RGGQV++V R+ + + L+
Sbjct: 719 REMSVISTPPEDRLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELLE 778
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
QA P + AIAHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D +
Sbjct: 779 QALPDLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADR 838
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEKD 440
GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA +D
Sbjct: 839 LGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-MLSEAAEKRLKAIEEFTELGAGFKLAMRD 897
Query: 441 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 500
+ IRG G + G QQ G++ +VG ++ ML E+++K V+ ID+ I+ +
Sbjct: 898 LEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQNKEVVKEVVPDPAIDLEIDAFI 957
Query: 501 PSEYINHLENPME----MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
YI + M+ KA D+ T+ L ++G ++ LL+ +
Sbjct: 958 DDAYIKDSARKISVYQRMLQIKNKAQLDDL------TDELIDRFGTPTDPVDRLLRVAQI 1011
Query: 557 RRMAADIGITKI 568
+ A +GI I
Sbjct: 1012 KEQARLLGIKSI 1023
>gi|387928175|ref|ZP_10130853.1| transcription-repair coupling factor [Bacillus methanolicus PB1]
gi|387587761|gb|EIJ80083.1| transcription-repair coupling factor [Bacillus methanolicus PB1]
Length = 1176
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/559 (39%), Positives = 347/559 (62%), Gaps = 22/559 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ + KL + W+R K K + ++Q + DL++LY R K + P E
Sbjct: 558 SEGKEPK-IYKLGGSD-WKRVKNKVQSSVQNIADDLIKLYAEREAAKGYAFSPDGDMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ ++ +++RD+ ER+ PMDRL+CGDVG+GKTEVALRA F ++ GKQ
Sbjct: 616 FEAAFPYQETEDQLRSIHEIKRDM-ERDRPMDRLLCGDVGYGKTEVALRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF YP IK+GLLSRF+++ ++ L +K G ++++VGT
Sbjct: 675 VAFLVPTTILAQQHYETMKERFQDYP-IKIGLLSRFRTRKQQTGTLKGLKDGTIDLVVGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V++ +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVIFRDLGLLIIDEEQRFGVAHKEKIKQLKTNIDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E + +
Sbjct: 794 RDLSVIETPPENRFPVQTYVMEYNGGLVREAIERELARGGQVYFLYNRVEDIERKAEEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDARVVYAHGKMSENELESVMLTFIEGEADVLVSTTIIETGVDIPNVNTLIVHDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYK-SVQIDININPRL 500
IRG G + G +Q G + +VG DL+ +ML E++ + + P + ++ID+ ++ +
Sbjct: 974 SIRGAGNLLGAEQHGFIDSVGFDLYSQMLKEAIEERKGNN--EQPKRPQLEIDLEVDAYI 1031
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
P YI +EM + D + + E + ++G+ P + L +
Sbjct: 1032 PDSYIADGHQKIEMYKRFRAISSLD--DIEELQEEMIDRFGEYPDEVAYLFQ-------- 1081
Query: 561 ADIGITKIYASGKMVGMKT 579
I K+Y G++ G++T
Sbjct: 1082 --IAEMKVY--GQLAGVET 1096
>gi|429462630|ref|YP_007184093.1| transcription-repair coupling factor [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei ATCC
30255)]
gi|451811614|ref|YP_007448069.1| superfamily II transcription-repair coupling factor [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338144|gb|AFZ82567.1| transcription-repair coupling factor [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei ATCC
30255)]
gi|451776772|gb|AGF47771.1| superfamily II transcription-repair coupling factor [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 1154
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/543 (40%), Positives = 332/543 (61%), Gaps = 22/543 (4%)
Query: 35 SDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYEPTPD 93
SDT WE++ K I +L+++Y R LK+ N +F F + T D
Sbjct: 553 SDT--WEKKYKKAIQQIHDTAAELLDIYSKRALKKGHAFLSNNDDYNKFVEDFEFTETID 610
Query: 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 153
Q++A V +D++ E PMDRL+CGDVGFGKTEVALRA F VS KQ ++L PT +LA+
Sbjct: 611 QEQAIQSVLKDMS-LEKPMDRLVCGDVGFGKTEVALRASFIAVSNNKQVIILCPTTLLAE 669
Query: 154 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNN 213
QH S+RF+ +P IK+ LSR +S+ E + I G ++II+GTH +L S + + N
Sbjct: 670 QHTQTFSKRFANWP-IKISELSRMKSRKEILHTISAINDGIVDIIIGTHKILSSEIKFKN 728
Query: 214 LGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE 273
LGL+V+DEE RFGV+QKE + + VDVL+L+ATPIPRTL ++L G RD S+I+T P +
Sbjct: 729 LGLVVIDEEHRFGVRQKEMFKNIRSEVDVLSLTATPIPRTLSMSLEGIRDFSIITTAPQK 788
Query: 274 RLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAH 333
RLPIKT + ++ AI+ E+ RGGQV+++ I + D ++Q P + +AIAH
Sbjct: 789 RLPIKTFIRYQDNSIIVEAIRREIRRGGQVYFLHNEISTIHNKKDLIEQLLPEIKVAIAH 848
Query: 334 GQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGR 393
GQ +R LE M+ F Q +L+CT I+E+G+DI NANTII+ FGLAQL+QLRGR
Sbjct: 849 GQMLARNLENIMKDFCQKKYDVLLCTTIIENGIDIPNANTIIINRADTFGLAQLHQLRGR 908
Query: 394 VGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQ 453
VGR+ +A+AYL P++ ++ QA +RL A++ +LG GF LA D+ IRG G I GE
Sbjct: 909 VGRSHHQAYAYLLIPNEGSITSQANKRLNAIQNMEDLGSGFYLALHDLEIRGSGEILGES 968
Query: 454 QTGDVGNVGVDLFFEMLFESLSKVDEH-----CVISVPYKSVQIDININPRLPSEYINHL 508
Q+G++ +G L+ EML E+++K+ + +++P S +I++ ++ LPSEY +
Sbjct: 969 QSGNIQEIGYSLYNEMLSEAIAKIKDGKETNLTHLTIP-ASCEINLGVSSILPSEYCPDI 1027
Query: 509 ENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEP---------YSMEILLKKLYVRRM 559
+ + A +D +Q+ + ++GK P + + IL KL+++++
Sbjct: 1028 SARLALYKRLSHAHNEDEILKIQY--EIEDRFGKLPDPAENLIITHKLRILADKLHIKKL 1085
Query: 560 AAD 562
+
Sbjct: 1086 IVE 1088
>gi|422347549|ref|ZP_16428460.1| transcription-repair coupling factor [Clostridium perfringens
WAL-14572]
gi|373223819|gb|EHP46163.1| transcription-repair coupling factor [Clostridium perfringens
WAL-14572]
Length = 1168
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/572 (38%), Positives = 356/572 (62%), Gaps = 12/572 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYE 89
+SKL W++ K K + +I + DL++LY R K + K+ +F +FPYE
Sbjct: 566 ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQWQKQFEDEFPYE 624
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V GKQ L PT
Sbjct: 625 ETPDQLSAIEDIKSDM-EANKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTT 683
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH+ + +RF+ +P I + ++SRF++K ++ E L +K G+++I++GTH L+ +
Sbjct: 684 ILAEQHYKNMKKRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDI 742
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++LTG RD S+I T
Sbjct: 743 QFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIET 802
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP R PI+T++ + + + AI E++R GQV++V R++ ++E +++Q+ P
Sbjct: 803 PPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESIQEVANYIQELVPECKA 862
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+ HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D + GL+QLYQ
Sbjct: 863 TVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQLYQ 922
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A +D+ IRG G +
Sbjct: 923 LRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNM 982
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++ +PS YI
Sbjct: 983 MGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDAFIPSSYIKDEI 1040
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
+E+ + ++ + ++ E L ++ P ++ L+ Y++ A + I +I
Sbjct: 1041 QKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKSKAKLLNIEEIK 1098
Query: 570 ASGK----MVGMKTNMNKKVFKMMIDSMTSEV 597
+ + + +K++FK++++ ++
Sbjct: 1099 EKNEDIIFIFESRERTDKRIFKVLLEEYKDDI 1130
>gi|313207139|ref|YP_004046316.1| transcription-repair coupling factor [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|383486451|ref|YP_005395363.1| transcription-repair coupling factor [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|312446455|gb|ADQ82810.1| transcription-repair coupling factor [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|380461136|gb|AFD56820.1| transcription-repair coupling factor [Riemerella anatipestifer ATCC
11845 = DSM 15868]
Length = 1119
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 233/606 (38%), Positives = 357/606 (58%), Gaps = 32/606 (5%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPY 88
TLSK+ + +W+ K K K ++++ DL++LY R K Y P E A F Y
Sbjct: 498 TLSKIG-SPSWKNLKNKTKAKVKQIAFDLIKLYAKRKTAKGFAYTPDTYLQNELEASFLY 556
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
E TPDQ+KA LDV+RD+ E +T MDRL+CGDVGFGKTEVA+RA F + GKQ VL PT
Sbjct: 557 EDTPDQEKATLDVKRDM-EADTIMDRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVLVPT 615
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
+LA QH+ +ER +P + + L+RF++ +K E L+ + G ++II+GTH L +
Sbjct: 616 TILAFQHYRSFAERLKDFP-VNISYLNRFRTAKQKRETLEKLAEGKIDIIIGTHQLASDK 674
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
V + +LGLL++DEE +FGV K+K+ + K ++D LTL+ATPIPRTL +L RD S+I
Sbjct: 675 VKFKDLGLLIIDEEHKFGVSVKDKLKTLKANIDTLTLTATPIPRTLQFSLMAARDLSVIK 734
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
TPPP R P++T L F +E + AI YEL R GQV+++ RI L++ +Q+ P
Sbjct: 735 TPPPNRQPVETQLIGFDEEIIRDAISYELQRDGQVYFINNRIDNLKDIAGMIQRLVPDAR 794
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+ HGQ +QLEE + F +G +L+ T IVESG+D+ NANTI + D Q+FG+A ++
Sbjct: 795 VITGHGQMDGKQLEENILDFMEGRYDVLVSTTIVESGVDVPNANTIFINDAQRFGMADVH 854
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ+A KD+ IRG G
Sbjct: 855 QMRGRVGRSNRKAFCYLITPPFDMVTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGD 914
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY-------------KSVQIDIN 495
+ G +Q+G + +G + + +++ E+L ++ + K V ID +
Sbjct: 915 LLGAEQSGFINEMGFETYQKIMQEALEELQNDAEFESLFENEADRKKLFKSSKDVNIDTD 974
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+ LP Y++ E + + +K AE + L +F L ++G P LLK +
Sbjct: 975 LELMLPDSYVSSTEERLSLY---QKLAEINNKEELKRFEAELEDRFGSLPEEAINLLKSV 1031
Query: 555 YVRRMAADIGITKI-YASGKMVG-MKTNMNKKV-----FKMMIDSMTSEVHRNSL----T 603
++ +AA IG KI +G ++G +N K FK +I ++ + SL +
Sbjct: 1032 ELKWLAAAIGFEKIVMKNGILLGYFPSNPQDKFYQTEKFKKIIQYLSQNPQKASLKEKHS 1091
Query: 604 FEGDQI 609
EG+Q+
Sbjct: 1092 AEGNQL 1097
>gi|407450995|ref|YP_006722719.1| transcription-repair coupling factor [Riemerella anatipestifer
RA-CH-1]
gi|403311978|gb|AFR34819.1| Transcription-repair coupling factor (superfamily II helicase)
[Riemerella anatipestifer RA-CH-1]
Length = 1096
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 230/605 (38%), Positives = 355/605 (58%), Gaps = 30/605 (4%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPY 88
TLSK+ + +W+ K K K ++++ DL++LY R K Y P E A F Y
Sbjct: 475 TLSKIG-SPSWKNLKNKTKAKVKQIAFDLIKLYAKRKTAKGFAYTPDTYLQNELEASFLY 533
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
E TPDQ+KA LDV+RD+ E +T MDRL+CGDVGFGKTEVA+RA F + GKQ VL PT
Sbjct: 534 EDTPDQEKATLDVKRDM-EADTIMDRLVCGDVGFGKTEVAIRAAFKATTDGKQVAVLVPT 592
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
+LA QH+ +ER +P + + L+RF++ +K E L+ + G ++II+GTH L +
Sbjct: 593 TILAFQHYRSFAERLKDFP-VNISYLNRFRTAKQKRETLEKLAEGKIDIIIGTHQLASDK 651
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
V + +LGLL++DEE +FGV K+K+ + K ++D LTL+ATPIPRTL +L RD S+I
Sbjct: 652 VKFKDLGLLIIDEEHKFGVSVKDKLKTLKANIDTLTLTATPIPRTLQFSLMAARDLSVIK 711
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
TPPP R P++T L F +E + AI YEL R GQV+++ RI L++ +Q+ P
Sbjct: 712 TPPPNRQPVETQLIGFDEEIIRDAISYELQRDGQVYFINNRIDNLKDIAGMIQRLIPDAR 771
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+ HGQ +QLEE + F +G +L+ T IVESG+D+ NANTI + D Q+FG+A ++
Sbjct: 772 VITGHGQMDGKQLEENILDFMEGRYDVLVSTTIVESGVDVPNANTIFINDAQRFGMADVH 831
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ+A KD+ IRG G
Sbjct: 832 QMRGRVGRSNRKAFCYLITPPFDMVTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGD 891
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY-------------KSVQIDIN 495
+ G +Q+G + +G + + +++ E+L ++ + K V ID +
Sbjct: 892 LLGAEQSGFINEMGFETYQKIMQEALEELQNDAEFESLFENEADRKKLFKSSKDVNIDTD 951
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
+ LP Y++ E + + + + ++ L +F L ++G P LLK +
Sbjct: 952 LELMLPDSYVSSTEERLSLYQKLSEINNKE--ELKRFEAELEDRFGSLPEEAINLLKSVE 1009
Query: 556 VRRMAADIGITK-IYASGKMVG-MKTNMNKKV-----FKMMIDSMTSEVHRNSL----TF 604
++ +AA IG K I +G +G +N K FK +I ++ + SL +
Sbjct: 1010 LKWLAAAIGFEKIIMKNGIFLGYFPSNPQDKFYQTEKFKKIIQYLSQNPQKASLKEKHSA 1069
Query: 605 EGDQI 609
EG+Q+
Sbjct: 1070 EGNQL 1074
>gi|120437484|ref|YP_863170.1| transcription-repair coupling factor [Gramella forsetii KT0803]
gi|117579634|emb|CAL68103.1| transcription-repair coupling factor [Gramella forsetii KT0803]
Length = 1125
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/566 (39%), Positives = 339/566 (59%), Gaps = 24/566 (4%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQ 85
+P + KL + AW+ K K K ++ + DL++LY R +K + P + E A
Sbjct: 495 KPPKIYKLG-SNAWKNLKKKTKARVKHIAYDLIKLYAKRRLEKGFKFDPDSYLQHELEAS 553
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ + V+ D+ E E PMDRL+CGDVGFGKTE+A+RA F V KQ +L
Sbjct: 554 FMYEDTPDQSSSTAAVKADM-ENERPMDRLVCGDVGFGKTEIAIRAAFKAVDNNKQVAIL 612
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA QH +ER +P +++ L+RF++ E++E L ++ G ++II+GTH L+
Sbjct: 613 VPTTILAFQHHRTFTERLKDFP-VRIDYLNRFRTAKERKETLADLEAGKVDIIIGTHQLV 671
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
V + +LGLLVVDEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L RD S
Sbjct: 672 SKAVKFKDLGLLVVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLS 731
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
I+TPPP R PI++H+ FS+E + A+ YE+ RGGQVF++ R++ ++E +Q+ P
Sbjct: 732 TITTPPPNRYPIESHVIRFSEETIRDAVSYEIQRGGQVFFIHNRVENIKEVAGMIQRLVP 791
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
I + HGQ ++LE+ M F G +L+ T IVESGLD+ ANTI + + FGL+
Sbjct: 792 DAKIGVGHGQMEGKKLEKLMLSFINGEFDVLVSTTIVESGLDVSEANTIFINNANNFGLS 851
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P S +++ A +R+ ALE+ ELG GF +A KD+ IRG
Sbjct: 852 DLHQMRGRVGRSNKKAFCYFITPPYSAMTEDARKRITALEQFSELGSGFNIAMKDLEIRG 911
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP-----------YKSVQIDI 494
G + G +Q+G + ++G D + ++L E++ ++ E+ + K QID
Sbjct: 912 AGDLLGGEQSGFINDIGFDTYQKILNEAIEELKENEFRDLYAETEDVEHKDFVKDTQIDT 971
Query: 495 NINPRLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
+ P +YIN++ + + +NE + E L +F L ++G+ P LL
Sbjct: 972 DFELLFPDDYINNITERLNLYTKLNELKTEEE-----LQKFEADLVDRFGELPTQAVDLL 1026
Query: 552 KKLYVRRMAADIGITK-IYASGKMVG 576
+ ++ +AA IG+ + I KMVG
Sbjct: 1027 NSVRIKWIAAKIGLERVIMKKNKMVG 1052
>gi|433543187|ref|ZP_20499599.1| transcription-repair coupling factor [Brevibacillus agri BAB-2500]
gi|432185546|gb|ELK43035.1| transcription-repair coupling factor [Brevibacillus agri BAB-2500]
Length = 1182
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/532 (41%), Positives = 334/532 (62%), Gaps = 6/532 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
T W+R K K + +++ + DL++LY R + P EF A FPY+ TPDQ +
Sbjct: 573 TEWKRVKNKVQSSVKDIAEDLIKLYAAREAAVGHAFSPDTTEQREFEAMFPYQETPDQLR 632
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A +V+ D+ ER PMDRL+CGDVG+GKTEVA+RA F V GKQ VL PT +LA+QH+
Sbjct: 633 AIAEVKADM-ERRRPMDRLVCGDVGYGKTEVAIRAAFKAVMDGKQVAVLVPTTILAQQHY 691
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF++YP I+V +LSRF+S+ E+ L +K G +++++GTH LL +++ LGL
Sbjct: 692 ETFRERFAEYP-IRVEVLSRFRSRKEQNATLKGLKEGTVDVVIGTHRLLSKDLMFRELGL 750
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L+VDEEQRFGV KEK+ K +VDV+TL+ATPIPRTL++++ G RD S+I TPP R P
Sbjct: 751 LIVDEEQRFGVSHKEKLKQIKTNVDVITLTATPIPRTLHMSMLGVRDLSVIETPPENRFP 810
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T++ +S V AI+ EL R GQVF++ +++G+E+ + + P IA+AHGQ
Sbjct: 811 VQTYVMEYSPALVREAIERELARDGQVFFLYNQVQGIEQMAEQISMLVPDARIAVAHGQM 870
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE + F +G +L+ T I+E+G+DI N NT+I+ + + GL+QLYQLRGRVGR
Sbjct: 871 NESELEGVILDFLEGNFDVLVSTTIIETGVDIPNVNTLIIYNADKMGLSQLYQLRGRVGR 930
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+ IRG G + G +Q G
Sbjct: 931 SNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHG 990
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ VG DL+ +ML E++ ++ V V+I++ ++ +PS YI +EM
Sbjct: 991 FINTVGFDLYSQMLKEAIDELKGE-VKQEAVTPVEINLQLDAYIPSMYITDSRQKIEMYK 1049
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+ A + + E L ++G P ++ LL +R A IT+I
Sbjct: 1050 KF--VAVSTLEDVDDLAEELLDRFGPVPKPVDNLLTISRLRVYALQHHITEI 1099
>gi|270159982|ref|ZP_06188638.1| transcription-repair coupling factor [Legionella longbeachae D-4968]
gi|289165275|ref|YP_003455413.1| Transcription-repair coupling factor [Legionella longbeachae NSW150]
gi|269988321|gb|EEZ94576.1| transcription-repair coupling factor [Legionella longbeachae D-4968]
gi|288858448|emb|CBJ12326.1| Transcription-repair coupling factor [Legionella longbeachae NSW150]
Length = 1146
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 225/538 (41%), Positives = 327/538 (60%), Gaps = 8/538 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA-IAEFAAQFPYEPTPDQKKAF 98
W+R K K I + ++L++LY R Q Y + + A+FA+ FP+ TPDQ A
Sbjct: 552 WQREKKKAAEKIHDVAIELLDLYAKREAQPGHQYQVDHSDYAKFASGFPFTETPDQLNAI 611
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+ +D+ E PMDRLICGDVGFGKTEVA+RA F V + KQ VL PT +LA QHF+
Sbjct: 612 EQIIKDM-ESSKPMDRLICGDVGFGKTEVAMRAAFVAVQSNKQVCVLVPTTLLAGQHFES 670
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+RF+ +P I + LLSRF+S E E L +K G ++I++GTH L S + + NLGLL+
Sbjct: 671 FRDRFADFP-INIELLSRFRSNKESEAVLAGLKSGTVDIVIGTHKLFQSSIAFKNLGLLI 729
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEE RFGVKQKE I + + VD+L+++ATPIPRTL +A+ G RD SL++TPP +RL IK
Sbjct: 730 IDEEHRFGVKQKEHIKALRTHVDILSMTATPIPRTLNMAMAGIRDISLMTTPPAKRLAIK 789
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T V AI E+ RGGQVF++ ++ +E + LQ P I AHGQ
Sbjct: 790 TFWQEKKDPIVREAILREILRGGQVFFLHNNVETIERICEDLQSLVPEAKIRSAHGQMRE 849
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
R+LE M F +L+CT I+E+G+DI ANTII+ +FGLAQL+QLRGRVGR+
Sbjct: 850 RELERVMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLHQLRGRVGRSH 909
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+A+AYL P++ L+ A++RL A+ +LG GF LA D+ IRG G + GE+Q+G++
Sbjct: 910 HQAYAYLLTPNQKSLTSDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGELLGEEQSGNM 969
Query: 459 GNVGVDLFFEMLFESLSKVDEHCV--ISVP-YKSVQIDININPRLPSEYINHLENPMEMV 515
+G +LF EML +++ + + +S P Y+ +ID+ I+ +P +YI+ + N + M
Sbjct: 970 HAIGFNLFMEMLDRAVNDLKAGKIPELSAPMYQGPEIDLRISAVIPEDYISDVHNRLIMY 1029
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
A ++ L L ++G P ++ LL ++ A +GI KI A +
Sbjct: 1030 KRISNA--KNTQQLHDLQIELIDRFGLLPQQVKHLLLITELKLKAERMGIQKISAGAQ 1085
>gi|18311466|ref|NP_563400.1| transcription-repair coupling factor [Clostridium perfringens str.
13]
gi|18146150|dbj|BAB82190.1| transcription-repair coupling factor [Clostridium perfringens str.
13]
Length = 1162
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/572 (38%), Positives = 356/572 (62%), Gaps = 12/572 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYE 89
+SKL W++ K K + +I + DL++LY R K + K+ +F +FPYE
Sbjct: 560 ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQWQKQFEDEFPYE 618
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V GKQ L PT
Sbjct: 619 ETPDQLSAIEDIKSDM-EANKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTT 677
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH+ + +RF+ +P I + ++SRF++K ++ E L +K G+++I++GTH L+ +
Sbjct: 678 ILAEQHYKNMKKRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDI 736
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++LTG RD S+I T
Sbjct: 737 QFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIET 796
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP R PI+T++ + + + AI E++R GQV++V R++ ++E +++Q+ P
Sbjct: 797 PPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESIQEIANYIQELVPECKA 856
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+ HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D + GL+QLYQ
Sbjct: 857 TVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQLYQ 916
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A +D+ IRG G +
Sbjct: 917 LRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNM 976
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++ +PS YI
Sbjct: 977 MGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDAFIPSSYIKDEI 1034
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
+E+ + ++ + ++ E L ++ P ++ L+ Y++ A + I +I
Sbjct: 1035 QKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKSKAKLLNIEEIK 1092
Query: 570 ASGK----MVGMKTNMNKKVFKMMIDSMTSEV 597
+ + + +K++FK++++ ++
Sbjct: 1093 EKNEDIIFIFESRERTDKRIFKVLLEEYKDDI 1124
>gi|169343325|ref|ZP_02864335.1| transcription-repair coupling factor [Clostridium perfringens C str.
JGS1495]
gi|169298623|gb|EDS80704.1| transcription-repair coupling factor [Clostridium perfringens C str.
JGS1495]
Length = 1168
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/572 (38%), Positives = 356/572 (62%), Gaps = 12/572 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYE 89
+SKL W++ K K + +I + DL++LY R K + K+ +F +FPYE
Sbjct: 566 ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQWQKQFEDEFPYE 624
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V GKQ L PT
Sbjct: 625 ETPDQLSAIEDIKSDM-ETNKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTT 683
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH+ + +RF+ +P I + ++SRF++K ++ E L +K G+++I++GTH L+ +
Sbjct: 684 ILAEQHYKNMKKRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDI 742
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++LTG RD S+I T
Sbjct: 743 QFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIET 802
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP R PI+T++ + + + AI E++R GQV++V R++ ++E +++Q+ P
Sbjct: 803 PPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESIQEVANYIQELVPECKA 862
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+ HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D + GL+QLYQ
Sbjct: 863 TVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQLYQ 922
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A +D+ IRG G +
Sbjct: 923 LRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNM 982
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++ +PS YI
Sbjct: 983 MGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDAFIPSSYIKDEI 1040
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
+E+ + ++ + ++ E L ++ P ++ L+ Y++ A + I +I
Sbjct: 1041 QKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKSKAKLLNIEEIK 1098
Query: 570 ASGK----MVGMKTNMNKKVFKMMIDSMTSEV 597
+ + + +K++FK++++ ++
Sbjct: 1099 EKNEDIIFIFESRERTDKRIFKVLLEEYKDDI 1130
>gi|399046084|ref|ZP_10738621.1| transcription-repair coupling factor Mfd [Brevibacillus sp. CF112]
gi|398055869|gb|EJL47919.1| transcription-repair coupling factor Mfd [Brevibacillus sp. CF112]
Length = 1182
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/532 (41%), Positives = 334/532 (62%), Gaps = 6/532 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
T W+R K K + +++ + DL++LY R + P EF A FPY+ TPDQ +
Sbjct: 573 TEWKRVKNKVQSSVKDIAEDLIKLYAAREAAVGHAFSPDTTEQREFEAMFPYQETPDQLR 632
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A +V+ D+ ER PMDRL+CGDVG+GKTEVA+RA F V GKQ VL PT +LA+QH+
Sbjct: 633 AIAEVKADM-ERRRPMDRLVCGDVGYGKTEVAIRAAFKAVMDGKQVAVLVPTTILAQQHY 691
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF++YP I+V +LSRF+S+ E+ L +K G +++++GTH LL +++ LGL
Sbjct: 692 ETFRERFAEYP-IRVEVLSRFRSRKEQNATLKGLKEGTVDVVIGTHRLLSKDLMFRELGL 750
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L+VDEEQRFGV KEK+ K +VDV+TL+ATPIPRTL++++ G RD S+I TPP R P
Sbjct: 751 LIVDEEQRFGVSHKEKLKQIKTNVDVITLTATPIPRTLHMSMLGVRDLSVIETPPENRFP 810
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T++ +S V AI+ EL R GQVF++ +++G+E+ + + P IA+AHGQ
Sbjct: 811 VQTYVMEYSPALVREAIERELARDGQVFFLYNQVQGIEQMAEQISMLVPDARIAVAHGQM 870
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE + F +G +L+ T I+E+G+DI N NT+I+ + + GL+QLYQLRGRVGR
Sbjct: 871 NESELEGVILDFLEGNFDVLVSTTIIETGVDIPNVNTLIIYNADKMGLSQLYQLRGRVGR 930
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+ IRG G + G +Q G
Sbjct: 931 SNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHG 990
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ VG DL+ +ML E++ ++ V V+I++ ++ +PS YI +EM
Sbjct: 991 FINTVGFDLYSQMLKEAIDELKGE-VKQEAVTPVEINLQLDAYIPSMYITDSRQKIEMYK 1049
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+ A + + E L ++G P ++ LL +R A IT+I
Sbjct: 1050 KF--VAVSTLEDVDDLAEELLDRFGPVPKPVDNLLTISRLRVYALQHHITEI 1099
>gi|304315715|ref|YP_003850860.1| transcription-repair coupling factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777217|gb|ADL67776.1| transcription-repair coupling factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 1166
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 236/610 (38%), Positives = 372/610 (60%), Gaps = 13/610 (2%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQ 85
+P L+KL W + K K K A++ + DL++LY R K + K+ P +F +
Sbjct: 561 KPPKLNKLG-GNEWSKLKKKAKKAVEDLAKDLIKLYAKRQTMKGYAFSKDTPWQKDFEER 619
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
FPYE T DQ + +++RD+ E + PMDRL+CGDVG+GKTEVALRA F V+ GKQ L
Sbjct: 620 FPYEETEDQLRCIEEIKRDM-ESDKPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVAFL 678
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA+QH++ +RF +P +K+ +LSRF+S E+ + + + G ++I+VGTH +L
Sbjct: 679 CPTTILAEQHYNNFVQRFKDFP-VKIEMLSRFRSYKEQSQIIKSLAEGTIDILVGTHKIL 737
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
+ V + +LGLL++DEEQRFGVK KEKI K ++DVL+LSATPIPRTL+++L G RD S
Sbjct: 738 QNDVKFKDLGLLIIDEEQRFGVKHKEKIKKLKENIDVLSLSATPIPRTLHMSLIGIRDMS 797
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I PP +R P++T++ F++E + AI EL RGGQV++V RI G+E +++ P
Sbjct: 798 VIENPPEDRYPVQTYVVEFNEELIRDAILRELGRGGQVYFVYNRINGIERMASIIKELVP 857
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
+A+AHGQ +LE M F G IL+CT I+E+GLDI N NTIIV D + GL+
Sbjct: 858 SARVAVAHGQMDEGKLENIMIGFLNGDYDILVCTTIIETGLDIPNVNTIIVYDSDKMGLS 917
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
QLYQLRGRVGR+++ A+AY Y ++++ A +RL A++E E G GF++A +D+ IRG
Sbjct: 918 QLYQLRGRVGRSNRLAYAYFTYRKDKVITEVAEKRLEAIKEFTEFGSGFKIAMRDLEIRG 977
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYI 505
G + G +Q G + +G D++ +L E++ + P + IDI ++ + EYI
Sbjct: 978 AGNLLGAEQHGHIDAIGYDMYLRLLDEAIKGLKGEVEDEKP--NTTIDIKVSAYIDKEYI 1035
Query: 506 NHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
+EM + E+D+ + + L ++ + P ++E L+ Y++ +A D+
Sbjct: 1036 EDENQRLEMYKKISSIENEKDVEDI---KDELIDRFKEYPKAVESLIDVAYLKALARDVN 1092
Query: 565 ITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL-PREQLL 623
I +I G + +K NK + ++D++ +E + + F G QI + + RE LL
Sbjct: 1093 ILEITERGNSIILKFKDNKSINSSIVDALVNE-FKGKIMFSG-QIPPYITYKYGKREDLL 1150
Query: 624 NWIFQCLAEL 633
+ ++++
Sbjct: 1151 KELINLVSKI 1160
>gi|255536470|ref|YP_003096841.1| transcription-repair coupling factor [Flavobacteriaceae bacterium
3519-10]
gi|255342666|gb|ACU08779.1| Transcription-repair coupling factor [Flavobacteriaceae bacterium
3519-10]
Length = 1138
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/557 (39%), Positives = 339/557 (60%), Gaps = 21/557 (3%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQ 85
R LSKL + AW+ K K K ++++ DL+ LY R K + P + E A
Sbjct: 514 REIVLSKLG-SPAWKTLKQKTKAKVKQIAFDLIRLYAKRKTAKGFAFTPDSYLQNELEAS 572
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ+KA LDV+ D+ E+ET MDRLICGDVGFGKTE+A+RA F + GKQ +L
Sbjct: 573 FIYEDTPDQEKATLDVKTDM-EKETVMDRLICGDVGFGKTEIAVRAAFKAATDGKQVAIL 631
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA QH+ ER +P + + ++RF++ +K E L + G ++I++GTH L+
Sbjct: 632 VPTTILAFQHYRSFKERLKDFP-VNISYMNRFRTAKQKSETLKGLAEGKIDIVIGTHQLV 690
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
S V + +LGLL++DEE +FGV K+K+ + K ++D LTL+ATPIPRTL +L RD S
Sbjct: 691 SSTVKFKDLGLLIIDEEHKFGVAVKDKLKTLKNNIDTLTLTATPIPRTLQFSLMAARDLS 750
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I TPPP R P++T + FS+E + AI YE+ R GQV+++ RI+ L++ +Q+ P
Sbjct: 751 VIKTPPPNRQPVETSIVGFSEEIIRDAISYEIQRDGQVYFINNRIENLKDIAGLIQRLVP 810
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
+ HGQ +QLE + F +G +L+ T IVESG+D+ NANT+ + D Q+FG+A
Sbjct: 811 DAKVITGHGQMEGKQLERNVLDFMEGKYDVLVSTTIVESGVDVPNANTMFINDAQRFGMA 870
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ+A KD+ IRG
Sbjct: 871 DLHQMRGRVGRSNRKAFCYLITPPFDMMTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRG 930
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV-------------DEHCVISVPYKSVQI 492
G + G +Q+G + +G D + +++ E+L ++ ++ + K V I
Sbjct: 931 AGDLLGGEQSGFINEMGFDTYQKIMQEALEELQNDEEFGELFENEEDRKKLFKSTKEVNI 990
Query: 493 DININPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGKEPYSMEILL 551
D ++ LP Y+ +E + + +K AE Q+ L +F L ++G P + LL
Sbjct: 991 DTDLELMLPDVYVQSIEERLSLY---QKLAEIQNRGDLRKFENELNDRFGALPPEAKNLL 1047
Query: 552 KKLYVRRMAADIGITKI 568
K + ++ +AA+IG KI
Sbjct: 1048 KSVELKWIAAEIGFDKI 1064
>gi|333998499|ref|YP_004531111.1| transcription-repair coupling factor [Treponema primitia ZAS-2]
gi|333741225|gb|AEF86715.1| transcription-repair coupling factor [Treponema primitia ZAS-2]
Length = 1145
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/572 (39%), Positives = 355/572 (62%), Gaps = 12/572 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE- 81
NE PR + KL + +WE RK + K +++ + L+ELY R + +P++
Sbjct: 539 NEGSPPR-MDKLG-SKSWENRKGRVKKSVEDIAEKLIELYSKRKASRGFAFPQDSEWQTM 596
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FP++ T DQ + +++ D+ E PMDRLICGDVG+GKTEVA+RA F V GKQ
Sbjct: 597 FEAAFPFDETEDQLRCVEEIKDDM-ESTHPMDRLICGDVGYGKTEVAVRACFKAVMGGKQ 655
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
LAPT +LA+QHF+ ERFS++P I++G+LSRF +A + L+ ++ G ++I+VGT
Sbjct: 656 VAFLAPTTILAEQHFENFQERFSQFP-IRLGMLSRFVDRAAARKTLEAVQKGEIDILVGT 714
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H ++ V + +LGL+V+DEEQRFGVK KE++ K +VD LTLSATPIPRTL+++L
Sbjct: 715 HRIIQKDVSFRDLGLIVIDEEQRFGVKDKERLKELKHNVDCLTLSATPIPRTLHMSLLKI 774
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD SL++TPP R PI+T + ++++++ +AI+ E++RGGQVF++ R++ L E ++
Sbjct: 775 RDMSLLATPPNNRHPIETVIGEYNEDRLAAAIRAEVERGGQVFFLHNRVESLNETRIRIE 834
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + + AHGQ ++ LE+ M +F G +L+ T I+E+G+DI N NTII+
Sbjct: 835 HLAPEMLVETAHGQMDAQDLEDVMHRFIHGGFHVLVSTTIIENGIDIPNVNTIIIDRADM 894
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
+G++QLYQLRGRVGR+D+ A+AYLFYP LS+ A++RL + + ELG GF++A KDM
Sbjct: 895 YGVSQLYQLRGRVGRSDRVAYAYLFYPRDRALSELAMKRLQVISDFTELGSGFKIAMKDM 954
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G +Q+GD+ +VG DL+ +L +++ ++ E+ +++ +++ +P
Sbjct: 955 EIRGAGNLLGREQSGDIYSVGFDLYLRLLDDAVRRL-ENSQYEAETETL-LELEYTGFIP 1012
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI+ + ME+ + +D L L ++G P LL +R +
Sbjct: 1013 DFYIDGAQEKMEVYKKIAAVKTRD--ELESLHGELMDRFGPPPDEAASLLALAEIRIICR 1070
Query: 562 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSM 593
DI + + G V ++ KV ++ ID +
Sbjct: 1071 DISVFSLRERGGSVKVEFG---KVSRVKIDRL 1099
>gi|182420518|ref|ZP_02643226.2| transcription-repair coupling factor [Clostridium perfringens NCTC
8239]
gi|182380350|gb|EDT77829.1| transcription-repair coupling factor [Clostridium perfringens NCTC
8239]
Length = 1168
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/572 (38%), Positives = 356/572 (62%), Gaps = 12/572 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYE 89
+SKL W++ K K + +I + DL++LY R K + K+ +F +FPYE
Sbjct: 566 ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQWQKQFEDEFPYE 624
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V GKQ L PT
Sbjct: 625 ETPDQLSAIEDIKSDM-EANKVMDRLLCGDVGYGKTEVAIRAAFKAVMEGKQVAFLVPTT 683
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH+ + +RF+ +P I + ++SRF++K ++ E L +K G+++I++GTH L+ +
Sbjct: 684 ILAEQHYKNMKKRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDILIGTHRLVSKDI 742
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++LTG RD S+I T
Sbjct: 743 QFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSLTGVRDISVIET 802
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP R PI+T++ + + + AI E++R GQV++V R++ ++E +++Q+ P
Sbjct: 803 PPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESIQEIANYIQELVPECKA 862
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+ HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D + GL+QLYQ
Sbjct: 863 TVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVNDADKMGLSQLYQ 922
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A +D+ IRG G +
Sbjct: 923 LRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNM 982
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++ +PS YI
Sbjct: 983 MGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDAFIPSSYIKDEI 1040
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
+E+ + ++ + ++ E L ++ P ++ L+ Y++ A + I +I
Sbjct: 1041 QKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKSKAKLLNIEEIK 1098
Query: 570 ASGK----MVGMKTNMNKKVFKMMIDSMTSEV 597
+ + + +K++FK++++ ++
Sbjct: 1099 EKNEDIIFIFESRERTDKRIFKVLLEEYKDDI 1130
>gi|427394340|ref|ZP_18887777.1| transcription-repair coupling factor [Alloiococcus otitis ATCC 51267]
gi|425730029|gb|EKU92876.1| transcription-repair coupling factor [Alloiococcus otitis ATCC 51267]
Length = 1191
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/564 (39%), Positives = 354/564 (62%), Gaps = 19/564 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK-NPAIAE 81
+E K P+ ++KL T+W + K K + ++ + DL++LY R QK + K N A
Sbjct: 556 SEGKTPK-INKLG-GTSWAKTKRKVQSQVEDIADDLIDLYASRESQKGYAFEKDNDYQAA 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ ++ +V+ D+ E + PMDRL+ GDVG+GKTEVA+RAIF V GKQ
Sbjct: 614 FEASFPYKETEDQLRSAEEVKSDM-ESDKPMDRLLVGDVGYGKTEVAIRAIFKAVQEGKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
A L PT VLA+QH++ + +RF+ +P +++GL+SRF++K E +E + +K G L+++VGT
Sbjct: 673 AAFLVPTTVLAQQHYETMLDRFADFP-VEIGLMSRFKTKKEIDETISRLKDGTLDVVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V + +LGLLVVDEEQRFGVK KE++ K VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRLLSKDVQFLDLGLLVVDEEQRFGVKHKERLKELKELVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ + AI+ E+ R GQVF++ R+ +E M +Q
Sbjct: 792 RDLSVIETPPANRYPVQTYVMEMNELVIKEAIEREMARDGQVFFLHNRVDTIERRMSDIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + HGQ QLEE + +F G +L+ T I+E+G+D+ N NT++V+D +
Sbjct: 852 ALVPEARVTYVHGQMTENQLEERLYQFLSGEYDVLVTTTIIETGVDMPNVNTLLVEDADR 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY + +L++ + RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSQLYQLRGRVGRSNRIAYAYFMHQADKVLTEVSESRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G++Q G + VG DL+ +ML E+++K V S ++D+++N LP
Sbjct: 972 SIRGAGNLLGKEQHGFIDAVGFDLYSQMLEEAVAKKRGQEVRKAT--SAELDLSLNAYLP 1029
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
S+YI +++ + + + +Q + L ++G+ P +++LL+
Sbjct: 1030 SDYIEDESQKIDLYKRIRQLESEADYRDLQ--DELLDRFGEFPEEVDLLLQ--------- 1078
Query: 562 DIGITKIYASGKMVGMKTNMNKKV 585
+G+ K Y+ +V N KK+
Sbjct: 1079 -VGLLKHYSEESLVEKIENTGKKI 1101
>gi|306835701|ref|ZP_07468707.1| transcription-repair coupling factor [Corynebacterium accolens ATCC
49726]
gi|304568419|gb|EFM43978.1| transcription-repair coupling factor [Corynebacterium accolens ATCC
49726]
Length = 1213
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/554 (40%), Positives = 334/554 (60%), Gaps = 16/554 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFP 87
LSK+ + W+ K K + A++++ +L++LY R Q P + P NP AE FP
Sbjct: 581 LSKMGGSD-WKNTKKKARAAVREIAGELVDLYAKR--QAAPGHQFAPDNPWQAEMEDNFP 637
Query: 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147
+ T DQ A V+ D+ E PMDR++ GDVG+GKTEVA+RA F V G Q VL P
Sbjct: 638 FVETEDQMLAIDAVKEDM-ESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGTQVAVLVP 696
Query: 148 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS 207
T +LA+QH+D SER + +P +K+ +LSRF SK E E + G ++I+VGTH LL +
Sbjct: 697 TTLLAQQHYDTFSERMAGFP-VKMAVLSRFTSKKEATEIFKGLADGSIDIVVGTHRLLQT 755
Query: 208 RVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI 267
V + NLGL+VVDEEQRFGV+ KE I + K SVDVLT+SATPIPRTL +++ G R+ S I
Sbjct: 756 GVHWKNLGLIVVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTI 815
Query: 268 STPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGV 327
TPP +R P+ T++ A+ ++V +AI+ EL R GQ F++ ++ +E+ L+ P
Sbjct: 816 LTPPEDRHPVLTYVGAYEDKQVAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPEA 875
Query: 328 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 387
I +AHGQ LE+T++ F +L+CT IVE+GLDI NANT+IV++ GL+QL
Sbjct: 876 RIVVAHGQMNEDVLEKTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 935
Query: 388 YQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFG 447
+QLRGRVGR+ + +AY YP + L++ + +RLA + + +LG G +A KD+ +RG G
Sbjct: 936 HQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 995
Query: 448 TIFGEQQTGDVGNVGVDLFFEML------FESLSKVDEHCVISVPYKSVQIDININPRLP 501
+ G QQ+G + VG DL+ ++ F+SL++ + V K ++ID+ ++ +P
Sbjct: 996 NVLGAQQSGHIAGVGFDLYVRLVGEAVEAFKSLARGETPAVTDEGPKEIRIDLPVDAHIP 1055
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI+ +E+ + AA QD L E + ++G P +E LL +R A
Sbjct: 1056 ESYIDSERLRLEVYRKL--AASQDNKDLAAAREEMEDRFGTLPKEVERLLAVARLRHQAR 1113
Query: 562 DIGITKIYASGKMV 575
+G+ I G V
Sbjct: 1114 RVGVADITVQGTRV 1127
>gi|332685798|ref|YP_004455572.1| transcription-repair coupling factor [Melissococcus plutonius ATCC
35311]
gi|332369807|dbj|BAK20763.1| transcription-repair coupling factor [Melissococcus plutonius ATCC
35311]
Length = 1181
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/621 (36%), Positives = 374/621 (60%), Gaps = 22/621 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E K P+ ++KL + W + K K I+ + DL++LY R +K +P + A
Sbjct: 552 FVASEAKAPK-INKLGGS-EWNKTKQKVSTKIEDIADDLIQLYAAREAEKGFAFPPDDAY 609
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVG+GKTEVALRA F ++
Sbjct: 610 QKEFEDAFPYTETDDQLRSAAEIKHDM-EKIRPMDRLLVGDVGYGKTEVALRAAFKAIAC 668
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ + L PT +LA+QH++ + +RF+ +P ++VGLLSRF++K ++ E + IKHG ++I+
Sbjct: 669 HKQVVFLVPTTILAQQHYETMIDRFADFP-VEVGLLSRFRTKKQQNETIQKIKHGQIDIV 727
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 728 VGTHRLLSKDITFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSM 787
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + I+ EL RGGQ+FY+ R++ +E+ ++
Sbjct: 788 LGVRDLSVIETPPANRYPIQTYIMENNLGAIREGIERELARGGQIFYLYNRVETIEKKVE 847
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
++ P +A AHGQ +LE T+ F + IL+ T I+E+G+DI N NT+ V++
Sbjct: 848 EIKALVPEARVAYAHGQMTEVKLENTLFDFIEQQYDILVTTTIIETGVDIPNVNTLFVEN 907
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 908 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAM 967
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + +VG D++ +ML E++S+ + + SV+ID+ I+
Sbjct: 968 RDLSIRGAGNLLGAQQHGFIDSVGFDMYTQMLSEAVSR-KQGKTVQDQKTSVEIDLGIDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+ YI +E+ + D++ ++ T+ L R +G P + LL ++
Sbjct: 1027 YLPTSYITDERQKIEIYKRIRQLENYDMYEELE-TDLLDR-FGSYPDEVAHLLTIGRIKM 1084
Query: 559 MAADIGITKIYASGKMV-------GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 611
I IY ++V G KT +++F + + S F + K
Sbjct: 1085 DGDRALIESIYKKQQVVKFTLSKIGTKTYNIEQIFSALSSTQLSA------DFPIENEKM 1138
Query: 612 ELLLELPRE-QLLNWIFQCLA 631
+LL++P+ + W+ + A
Sbjct: 1139 TILLKIPKSMETATWLLEITA 1159
>gi|332798184|ref|YP_004459683.1| transcription-repair coupling factor [Tepidanaerobacter acetatoxydans
Re1]
gi|332695919|gb|AEE90376.1| transcription-repair coupling factor [Tepidanaerobacter acetatoxydans
Re1]
Length = 1178
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 232/564 (41%), Positives = 341/564 (60%), Gaps = 8/564 (1%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQF 86
P L KL W + K+K K +I++M +L++LY R + + P EF F
Sbjct: 568 PPKLHKLGGNE-WNKAKSKAKDSIKQMAEELIKLYATRESVSGFAFSADSPWQKEFQDMF 626
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
PYE TPDQ A +V+RD+ E PMDRL+CGDVG+GKTEVA+RA F V GKQ VL
Sbjct: 627 PYEETPDQLAAIEEVKRDM-ESPKPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLV 685
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA+QHF +ERF +P +K+ +SRF+S E++ L +K G ++II+GTH LL
Sbjct: 686 PTTILAEQHFHTFAERFKPFP-VKIESISRFKSPTEQKHILTKLKTGEIDIIIGTHRLLQ 744
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
+ + +LGLLVVDEEQRFGV KEKI K +VDVLTL+ATPIPRTL++A++G RD S+
Sbjct: 745 KDIKFKDLGLLVVDEEQRFGVSHKEKIKQLKKNVDVLTLTATPIPRTLHMAMSGLRDMSI 804
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I TPP +R PI+T++ ++ + AI EL R GQV+YV R++ + E L++ P
Sbjct: 805 IETPPEDRFPIQTYVVEHNESLIRDAIMRELSRNGQVYYVYNRVQTIHEEAQKLKRLVPE 864
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
IA+AHGQ +LEE M F + +L+CT I+ESGLDI N NT+IV + GL+Q
Sbjct: 865 ARIAVAHGQMNEDELEEVMLGFYEHDYDVLVCTTIIESGLDIPNVNTLIVTSADRLGLSQ 924
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
LYQLRGRVGR++++A AYL Y +LS+ A +RL+A+ E E G GF++A KD+ IRG
Sbjct: 925 LYQLRGRVGRSNRQAFAYLTYKKDKVLSEAAEKRLSAIREFTEFGSGFKIALKDLEIRGA 984
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
G I G +Q G + +G DL+ ++L ++ ++ +++D +N + +YI+
Sbjct: 985 GNILGAEQHGHMMAIGYDLYTKLLAAAVKELKGEKEEEEIRPVLELD--VNAYISDKYIS 1042
Query: 507 HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGIT 566
ME+ A+ + + E + ++G P L+ +R +AA + I
Sbjct: 1043 KPALKMEIYQRI--ASVDTMEEVDDLEEEVEDRFGDIPEPTRNLIVISRIRVLAAKLRIA 1100
Query: 567 KIYASGKMVGMKTNMNKKVFKMMI 590
I G ++ +K + + K+ M+
Sbjct: 1101 SIIQQGDIINIKFHDSNKLTPEML 1124
>gi|258510200|ref|YP_003183634.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257476926|gb|ACV57245.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 1183
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/539 (40%), Positives = 336/539 (62%), Gaps = 11/539 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFPYEPTPD 93
++ W++ K + K +++ + DL++LY R + P + P P A+F FPYE TPD
Sbjct: 573 SSEWQKTKNRVKKSVRDIAGDLLKLYAKR--EATPGHAFSPDTPWQADFENMFPYEETPD 630
Query: 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 153
Q +A +++RD+ E+ PMDRL+CGDVG+GKTEVA+RA F V GKQ VL PT VLA+
Sbjct: 631 QLRAIAEIKRDM-EKPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVPTTVLAQ 689
Query: 154 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNN 213
QH++ ERF+ +P +K+ +LSRF+++ E +E L +K G ++I++GTH LL + V + +
Sbjct: 690 QHYETFKERFAGFP-VKIEMLSRFRTRKETQEVLKGLKEGTIDIVIGTHRLLQNSVQFKD 748
Query: 214 LGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE 273
LGLL+VDEEQRFGV KEK+ + +VD LTL+ATPIPRTL++++ G RD S+I TPP
Sbjct: 749 LGLLIVDEEQRFGVTHKEKLKQLRANVDCLTLTATPIPRTLHMSMLGVRDLSIIETPPEN 808
Query: 274 RLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAH 333
R P++T++ +++ V AI+ EL RGGQV++V ++ + + +Q P +++AH
Sbjct: 809 RFPVQTYVVEYNEGLVKEAIERELARGGQVYFVYNDVQTIHRMAERVQSLVPDARVSVAH 868
Query: 334 GQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGR 393
GQ +LE M F +G +L+ T I+E+GLDI N NT+IV D +FGL+QLYQLRGR
Sbjct: 869 GQMAEAELERVMLDFLEGEYDVLVTTTIIETGLDIPNVNTLIVYDADKFGLSQLYQLRGR 928
Query: 394 VGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQ 453
VGR+++ A+AY Y +LS+ A +RLAA++E ELG GF++A +D+ IRG G + G +
Sbjct: 929 VGRSNRIAYAYFTYQPAKVLSEVAEKRLAAIKEFTELGSGFKIAMRDLSIRGAGNLLGAE 988
Query: 454 QTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
Q G + +VG D++ E+L +++ ++ + P + ID+ + +P YI+ +
Sbjct: 989 QHGFINSVGFDMYTELLQQAIRELRGEQ-LEKPVEPT-IDVPVEAYIPDTYISDPSQKVA 1046
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASG 572
M A Q + + L +YG P + LL ++ +A I G
Sbjct: 1047 MYKRFR--AIQAVSEADDLEDELIDRYGDPPQEVRNLLDVTRLKSLAMQAHADHIATQG 1103
>gi|257783934|ref|YP_003179151.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469]
gi|257472441|gb|ACV50560.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469]
Length = 1147
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/555 (40%), Positives = 352/555 (63%), Gaps = 19/555 (3%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNPAIAEFAA 84
PR L++L +T W R K + + +K+ DL++LY R P Y PA E +
Sbjct: 547 PR-LTRL-NTADWSRATNKARKSAKKLAFDLVDLYTRRASV--PGYAFSLDTPAQEEMES 602
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
FPY+ TPDQ+ A D++ D+ R+ PMDRL+CGDVGFGKTEVALRA F +Q M+
Sbjct: 603 SFPYQLTPDQESAVADIKLDMEARK-PMDRLLCGDVGFGKTEVALRAAFKACQDARQVMI 661
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
L PT +LA+QH++ RF+ + D+KV +LSRF + A++ + L+ G ++++VGTH L
Sbjct: 662 LCPTTILAQQHYETFFSRFAPF-DLKVSVLSRFVTPAQQRKALEGFADGTIDVLVGTHRL 720
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264
L + V ++LGL+++DEEQRFGV+ KE++ + + VDVLTLSATPIPRT+ +A++G RD
Sbjct: 721 LSADVNPHDLGLVIIDEEQRFGVQHKEQLKNMREQVDVLTLSATPIPRTMQMAMSGVRDM 780
Query: 265 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 324
SLI TPPP R P++ + ++ + V +AI+ EL+R GQV+YV R+ ++E + +++A
Sbjct: 781 SLILTPPPGRKPVQVTVGEYNPDLVSAAIRSELEREGQVYYVSNRVTTIDEAVARVEEAA 840
Query: 325 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 384
P + +AHGQ +R++E M F + I +L+ T I+ESG+D + NT+I++D Q+ GL
Sbjct: 841 PEARVGVAHGQMSAREVENVMLAFQEHEIDVLVATTIIESGIDNSHTNTLIIEDSQRLGL 900
Query: 385 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIR 444
AQLYQL+GRVGR ++A+AY +P + L+++A ERL A+ E ++LG G ++A +D+ IR
Sbjct: 901 AQLYQLKGRVGRGRQQAYAYFMFPAELPLTEEATERLTAINEFQDLGSGMRIAMRDLEIR 960
Query: 445 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR--LPS 502
G G++ G +Q G++ +VG DLF +ML E++++ S + ++ IN+ L
Sbjct: 961 GAGSLMGAEQHGNLSSVGFDLFTQMLGEAVAEARGE---SAELEQTEVTINLPADFFLDE 1017
Query: 503 EYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
+Y+ ++ + + A E DI L Q TE+ +G P + + L + VR A
Sbjct: 1018 DYLPEVDRRVLVYRRLAAATELSDIDALQQDTEN---SFGALPLAGKNLFDRARVRIRAQ 1074
Query: 562 DIGITKI-YASGKMV 575
+G T + +G++V
Sbjct: 1075 RLGATSVSLTNGRLV 1089
>gi|366163462|ref|ZP_09463217.1| transcription-repair coupling factor [Acetivibrio cellulolyticus CD2]
Length = 1177
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/551 (40%), Positives = 342/551 (62%), Gaps = 17/551 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K P+ LSKL + W + KTK K +++++ +L++LY R + + + +
Sbjct: 569 SEGKSPK-LSKLGGSD-WIKTKTKAKESLKELAEELIKLYAMREASEGHAFGSDTIWQKQ 626
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F QFPY+ T DQ K +++RD+ E PMDRL+CGDVG+GKTEVA+RAIF V GKQ
Sbjct: 627 FEEQFPYQETDDQLKCIEEIKRDM-ESNKPMDRLLCGDVGYGKTEVAIRAIFKAVMDGKQ 685
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT VLA+Q ++ ER +P + V ++SRF+++ E++ L +K G +++++GT
Sbjct: 686 VAYLVPTTVLAQQQYNNFKERMKDFP-VTVEMVSRFRTQTEQKHILKDVKAGMVDVLIGT 744
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL + + NLGLLV+DEEQRFGV KEKI + + +VDVLTL+ATPIPRTL++++ G
Sbjct: 745 HRLLQKDIAFKNLGLLVIDEEQRFGVMHKEKIKNMRANVDVLTLTATPIPRTLHMSMVGI 804
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
+D S I PP ER P++T++ + E + AI E+ R GQVFY+ R++ + ++
Sbjct: 805 KDISTIEDPPEERYPVQTYVMEHNNEVIKEAINREMARNGQVFYLYNRVRSINVKAAEIK 864
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P IA+AHGQ +LE+ M +F G +L+CT I+ESGLD+ N NTIIV+D +
Sbjct: 865 NMVPDARIAVAHGQMNESELEDIMFRFINGEYDVLVCTVIIESGLDMPNVNTIIVEDSDK 924
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GLAQLYQLRGRVGR+++ A+AY+ Y +LS+ A +RL A++E E G GF++A +D+
Sbjct: 925 MGLAQLYQLRGRVGRSNRMAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAMRDL 984
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS----KVDEHCVISVPYKSVQIDININ 497
IRG G + G QQ G + VG D++ +L E+++ K +E V + ID+N++
Sbjct: 985 QIRGAGNLLGAQQHGHIDLVGYDMYCRLLSEAVNELSGKSNEEEV------EISIDVNLS 1038
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+ + YI+ +EM A+ QD + + L +YG P + L+K +++
Sbjct: 1039 AYIDNSYISSENEKIEMYKRI--ASIQDEQDALDVEDELIDRYGNIPVPVSNLIKIAHIK 1096
Query: 558 RMAADIGITKI 568
+A + G + +
Sbjct: 1097 TLAMNCGFSSV 1107
>gi|431808760|ref|YP_007235658.1| transcription-repair coupling factor [Brachyspira pilosicoli
P43/6/78]
gi|430782119|gb|AGA67403.1| transcription-repair coupling factor [Brachyspira pilosicoli
P43/6/78]
Length = 1196
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/516 (42%), Positives = 330/516 (63%), Gaps = 15/516 (2%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
+AW++ K+K + DL+++Y R Y P +F A F YE T DQ +
Sbjct: 561 SAWDKIKSKAREDALATARDLIKIYAIRSNVHGNIYGPDTQWQDDFEASFNYEETVDQLR 620
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A D++ D+ E + MDRL+CGDVGFGKTEVA RAIF V AGKQ +L PT +L++QH+
Sbjct: 621 AINDIKSDM-ESDKMMDRLVCGDVGFGKTEVAFRAIFKAVMAGKQCAILCPTTILSQQHY 679
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ +RF +P +++ +L+RF S + +++ +M+ +G +II+GTH LL + + NLGL
Sbjct: 680 NNAKKRFEDFP-VRIEVLNRFISSRQAKKNKEMLANGSCDIIIGTHMLLSDDIKFKNLGL 738
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
+V+DEEQRFGVK KE + + DVLTLSATPIPRTL +ALTG RD S+I TPP R+P
Sbjct: 739 IVIDEEQRFGVKHKEALKKLRFETDVLTLSATPIPRTLNMALTGIRDISIIETPPLNRIP 798
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
+KT++ F+++ V++AI+ EL R GQVFY+ RI +E +++ P I +AHG+
Sbjct: 799 VKTYVMEFNEKTVVNAIERELKRNGQVFYLYNRIDTIESFALMIKKLCPKASICVAHGRM 858
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
QLE+ M F IL+ T I+E+G+DI NANTI++ + GL++LYQLRGRVGR
Sbjct: 859 TGIQLEKIMSDFINHKYDILVSTTIIENGIDIPNANTILIDSANKLGLSELYQLRGRVGR 918
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+D+EA+AY+FYP+ L++ A +RL A+ E +LG GF++A +D+ IRG G I G++Q+G
Sbjct: 919 SDREAYAYMFYPENLALTEVAYKRLQAISEHTDLGAGFKIAMRDLEIRGAGNILGKEQSG 978
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ VG +L+ +ML E+ ++ + + V + +V ID N +P EYI+ +P E ++
Sbjct: 979 MIYQVGYELYTQMLEEATNEY-KGEIKEVTFDTV-IDFKHNLFIPDEYIS---DPKEKIS 1033
Query: 517 EAE----KAAEQDIWCLMQFTESLRRQYGKEPYSME 548
+ +++DI ++ + +YGK P ME
Sbjct: 1034 VYKLIMRSQSDEDIDTAKEY---MIDKYGKMPKEME 1066
>gi|297622390|ref|YP_003703824.1| transcription-repair coupling factor [Truepera radiovictrix DSM
17093]
gi|297163570|gb|ADI13281.1| transcription-repair coupling factor [Truepera radiovictrix DSM
17093]
Length = 1006
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 233/548 (42%), Positives = 322/548 (58%), Gaps = 10/548 (1%)
Query: 22 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE 81
P T P LS L T W R + + +V Q++ + L+ Y R Q+ P NP
Sbjct: 405 PGTTDDPPRLSTLG-TNEWARARERARVGAQELALKLIRTYAERQLQQGLAMPANPEWDP 463
Query: 82 FAAQ-FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 140
+ P+E TPDQK A V D+ R PMDRLI GDVGFGKTEVA+RA V GK
Sbjct: 464 LIDENCPFELTPDQKSATQAVLHDMA-RPVPMDRLISGDVGFGKTEVAIRAAHRAVGHGK 522
Query: 141 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 200
Q +L PT VLAKQHF+ +ERF+ P + V LLSRF + E + L +K G +++++G
Sbjct: 523 QVAMLVPTTVLAKQHFETFAERFAGLP-VVVELLSRFSTDKEARDILAGLKAGTIDVVIG 581
Query: 201 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 260
TH LL V + +LGLL+VDEE RFGV QKE++ + K ++DVL+LSATPIPRTLY++L G
Sbjct: 582 THRLLSEEVAFKDLGLLIVDEEHRFGVGQKERMKAMKANLDVLSLSATPIPRTLYMSLVG 641
Query: 261 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 320
RD S I TPP R PI+T L F A+ +EL+RGG+VFY+ R+ + +L
Sbjct: 642 LRDVSQIMTPPAGRKPIQTVLQPFDPMVAREAVMFELERGGKVFYIHDRVGSMGAKALWL 701
Query: 321 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 380
Q+ P I +AHGQ +LEE M F GA +L+ T IVESGLD+ ANT++++
Sbjct: 702 QKLVPEARIGVAHGQMSGDELEEVMLNFQGGAYDVLLATTIVESGLDVAGANTLLIERAD 761
Query: 381 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKD 440
+ GLAQLYQLRGRVGR EA AYL YP + L++ A RL AL E +LG G LAEKD
Sbjct: 762 KLGLAQLYQLRGRVGRRSTEAWAYLLYPGR--LTEGAQRRLFALAELNDLGSGHLLAEKD 819
Query: 441 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 500
M IRG G + G +Q G + V ++++ EML E ++K+ P ++V ID+N++ RL
Sbjct: 820 MEIRGVGNLLGPEQHGHISAVSLEVYTEMLAEEIAKLKGETQ-EAP-QAVAIDLNLDARL 877
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
YI ++ + A + + + +R +YG P + + + +R +A
Sbjct: 878 SPSYIA--DDDARIAFYGRLAETTSLAEVARVQREMRERYGPLPDEVRTFTELVKLRLLA 935
Query: 561 ADIGITKI 568
A G+ I
Sbjct: 936 AQKGVVTI 943
>gi|296131721|ref|YP_003638968.1| transcription-repair coupling factor [Thermincola potens JR]
gi|296030299|gb|ADG81067.1| transcription-repair coupling factor [Thermincola potens JR]
Length = 1178
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 234/602 (38%), Positives = 366/602 (60%), Gaps = 23/602 (3%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYE 89
LS+L W + K + K ++++M +L+ LY R K YP + EF FPYE
Sbjct: 573 LSRLGGQD-WNKVKKRVKESVREMAQELLNLYATREKVVGHAYPPDTVWQKEFEEAFPYE 631
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ +A +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V +Q VL PT
Sbjct: 632 ETPDQLRAIKEIKEDM-ERPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDSRQVAVLVPTT 690
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH++ ERFS YP IK+ +LSRF+S E++E L +K G ++I++GTH L+ + V
Sbjct: 691 ILAQQHYNTFVERFSGYP-IKIEMLSRFRSPKEQQEILKNLKTGGVDIVIGTHRLVQNDV 749
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ LGL++VDEEQRFGV KE++ + +VDVLTL+ATPIPRTL+++L G RD S++ T
Sbjct: 750 QFKKLGLVIVDEEQRFGVAHKERLKQLRKNVDVLTLTATPIPRTLHMSLVGVRDMSILET 809
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP +R P++T++ F+ + + A++ E+DRGGQV++V RI +++ L+ A P +
Sbjct: 810 PPEDRWPVQTYVLEFNWDVIGDAVRKEMDRGGQVYFVHNRIMDIDQIAAQLRAAVPEARV 869
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
A+AHGQ QLE+ M +F +G +L+CT I+E+GLDI N NT+IV + + GL+QLYQ
Sbjct: 870 AVAHGQMKEDQLEQVMLEFLEGEYDVLLCTTIIETGLDIPNVNTLIVDEADRMGLSQLYQ 929
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR+ + A+AY Y +L++ A +RL A+ E E G GF++A +D+ IRG G
Sbjct: 930 LRGRVGRSHRLAYAYFTYRRDKVLTEVAEKRLQAIREFTEFGSGFKIAMRDLEIRGAGNF 989
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G +Q G + VG D++ +L E++ ++ + + + ID+NI+ + ++YI
Sbjct: 990 LGPEQHGHMMAVGFDMYCRLLEEAVKELKGDLIEEI--QEPTIDLNIDAHIGNDYIPDAG 1047
Query: 510 NPMEM------VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADI 563
+E+ + AE A + E L +YG P S+ LL ++ + +
Sbjct: 1048 MKIEIYQKIMRIQSAEDARD--------VGEELEDRYGPVPQSVTNLLAIARIKALCTRL 1099
Query: 564 GITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ-IKAELLLE-LPREQ 621
+ + MV +K + + V + + ++ +R+ L F G Q ++ L ++ L REQ
Sbjct: 1100 KVQAVTQIKDMVHIKFHPSNTVQGEQLAGL-AQRYRHRLVFTGTQALQINLKVKGLSREQ 1158
Query: 622 LL 623
L
Sbjct: 1159 AL 1160
>gi|227538907|ref|ZP_03968956.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
ATCC 33300]
gi|227241416|gb|EEI91431.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
ATCC 33300]
Length = 1112
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/560 (39%), Positives = 330/560 (58%), Gaps = 14/560 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQK 95
T WE+ K K ++ + DL++LY R Q + P E A F YE TPDQ+
Sbjct: 506 TDTWEKLKKTTKRKVKDIARDLIKLYAKRKAQTGNAFSPDTYLQNELEASFIYEDTPDQE 565
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
KA DV+RD+ E PMDRLICGDVGFGKTEVA+RA F V+ KQ VL PT +LA QH
Sbjct: 566 KATADVKRDM-ESPHPMDRLICGDVGFGKTEVAIRAAFKAVADSKQVAVLVPTTILALQH 624
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
+ +ER P + ++RF++ + +E L + G ++I++GTH L+ V + +LG
Sbjct: 625 YRTFTERLKGLP-CNIDYVNRFKTTKQIKETLAKLTEGKIDILIGTHRLVSKDVKFKDLG 683
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
L+++DEEQ+FGV KEK+ + +VD LTL+ATPIPRTL+ +L G RD S+ISTPPP R
Sbjct: 684 LMIIDEEQKFGVSVKEKLKVMRANVDSLTLTATPIPRTLHFSLMGARDLSIISTPPPNRQ 743
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P++T L F++ + A+ YELDRGGQVF++ R+ L++ +Q+ PG + +AHGQ
Sbjct: 744 PVQTELHVFNETLIQEAVSYELDRGGQVFFIHNRVADLKQLGALIQKLVPGARVGVAHGQ 803
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
LE+ M KF +L+ T I+E+GLDI NANTI++ FGL+ L+Q+RGRVG
Sbjct: 804 LEGDDLEDVMLKFISHEFDVLVATTIIEAGLDIPNANTIMINHAHMFGLSDLHQMRGRVG 863
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A YL P S L+ +A +RL+A+EE ELG GF +A +D+ IRG G + G +Q+
Sbjct: 864 RSNKKAFCYLLSPPLSTLTSEAYKRLSAIEEFSELGSGFNVAMRDLDIRGSGNLLGAEQS 923
Query: 456 GDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKS------VQIDININPRLPSEYINH 507
G + +G +++ ++L E++ K DE + K QID ++ +P EY+ +
Sbjct: 924 GFIAEIGFEMYHKILDEAIQELKDDEFTDLFADEKERKYVSFTQIDTDLEVLIPDEYVTN 983
Query: 508 LENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITK 567
+ + E K ++ L F S+ ++G P + L L ++ IG+ K
Sbjct: 984 ISERYNLYTELSKLENEE--QLTAFARSMEDRFGPIPREVFELFNTLRLQWYGKQIGLEK 1041
Query: 568 I-YASGKMVGMKTNMNKKVF 586
I Y + G N K +
Sbjct: 1042 ISYKKNTLKGFFLNNPKSSY 1061
>gi|300870408|ref|YP_003785279.1| transcription-repair coupling factor [Brachyspira pilosicoli 95/1000]
gi|300688107|gb|ADK30778.1| transcription-repair coupling factor [Brachyspira pilosicoli 95/1000]
Length = 1196
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/516 (42%), Positives = 330/516 (63%), Gaps = 15/516 (2%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
+AW++ K+K + DL+++Y R Y P +F A F YE T DQ +
Sbjct: 561 SAWDKIKSKAREDALATARDLIKIYAIRSNVHGNIYGPDTQWQDDFEASFNYEETVDQLR 620
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A D++ D+ E + MDRL+CGDVGFGKTEVA RAIF V AGKQ +L PT +L++QH+
Sbjct: 621 AINDIKSDM-ESDKMMDRLVCGDVGFGKTEVAFRAIFKAVMAGKQCAILCPTTILSQQHY 679
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ +RF +P +++ +L+RF S + +++ +M+ +G +II+GTH LL + + NLGL
Sbjct: 680 NNAKKRFEDFP-VRIEVLNRFISSRQAKKNKEMLANGSCDIIIGTHMLLSDDIKFKNLGL 738
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
+V+DEEQRFGVK KE + + DVLTLSATPIPRTL +ALTG RD S+I TPP R+P
Sbjct: 739 IVIDEEQRFGVKHKEALKKLRFETDVLTLSATPIPRTLNMALTGIRDISIIETPPLNRIP 798
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
+KT++ F+++ V++AI+ EL R GQVFY+ RI +E +++ P I +AHG+
Sbjct: 799 VKTYVMEFNEKTVVNAIERELKRNGQVFYLYNRIDTIESFALMIKKLCPKASICVAHGRM 858
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
QLE+ M F IL+ T I+E+G+DI NANTI++ + GL++LYQLRGRVGR
Sbjct: 859 TGIQLEKIMSDFINHKYDILVSTTIIENGIDIPNANTILIDSANKLGLSELYQLRGRVGR 918
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+D+EA+AY+FYP+ L++ A +RL A+ E +LG GF++A +D+ IRG G I G++Q+G
Sbjct: 919 SDREAYAYMFYPENLALTEVAYKRLQAISEHTDLGAGFKIAMRDLEIRGAGNILGKEQSG 978
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ VG +L+ +ML E+ ++ + + V + +V ID N +P EYI+ +P E ++
Sbjct: 979 MIYQVGYELYTQMLEEATNEY-KGEIKEVTFDTV-IDFKHNLFIPDEYIS---DPKEKIS 1033
Query: 517 EAE----KAAEQDIWCLMQFTESLRRQYGKEPYSME 548
+ +++DI ++ + +YGK P ME
Sbjct: 1034 VYKLIMRSQSDEDIDTAKEY---MIDKYGKMPKEME 1066
>gi|78357082|ref|YP_388531.1| transcription-repair coupling factor [Desulfovibrio alaskensis G20]
gi|78219487|gb|ABB38836.1| transcription-repair coupling factor [Desulfovibrio alaskensis G20]
Length = 1152
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/545 (42%), Positives = 330/545 (60%), Gaps = 20/545 (3%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPY 88
+L KL W K+K + AI+++ DL+E+Y R K Y P N EF A F +
Sbjct: 551 SLDKLG-GAGWSASKSKARKAIERIAHDLVEMYAWRKVAKGYRYSPVNDMYREFEASFGF 609
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
E TPDQ +A DV D+ ER PMDRL+CGDVGFGKTEVALRA F GKQ +L PT
Sbjct: 610 EETPDQARAIEDVLDDM-ERAEPMDRLVCGDVGFGKTEVALRAAFRAAMDGKQVALLCPT 668
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
VLA+QHF R ++P + VG+LSRF S+ ++E L + G ++I++GTH +L
Sbjct: 669 TVLAEQHFQTFRSRLGQFP-VNVGMLSRFVSRQRQKEVLAACERGQIDILIGTHRILSDD 727
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
V+ NL LL++DEEQRFGV+ KE++ + +VDVLTL+ATPIPRTL L+++G R+ S+I
Sbjct: 728 VILPNLSLLILDEEQRFGVRHKERLKKMRRNVDVLTLTATPIPRTLQLSMSGIRELSVIE 787
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
T PPER P+KT L + + + EL R GQVF+V R++GLE ++++ P
Sbjct: 788 TAPPERKPVKTALIDRDPDILREVLLRELQREGQVFWVHNRVQGLERVAEYVRSLVPDAR 847
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+ +AHGQ + LEETM KF + +L+CT IVESGLD ANT++V Q FGL QLY
Sbjct: 848 VGMAHGQMSEKALEETMHKFWHAELDVLVCTAIVESGLDFPRANTLVVDQAQMFGLGQLY 907
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
QLRGRVGR+D++AHA PD + + A +RL + E LG GFQ+A +D+ +RG G
Sbjct: 908 QLRGRVGRSDRQAHAVFVVPDVDGVPELARKRLKIILEMDYLGAGFQVAMEDLRLRGAGN 967
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ--PRLPSEYIN 506
I GE Q+G + +G+D++ EML E ++++ V + VQ ++NI +P Y++
Sbjct: 968 ILGEVQSGHMVKIGLDMYLEMLEEEVARLKGEPV----REDVQTELNIGITAHIPEGYMD 1023
Query: 507 ----HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
L+ + + A+ AA++ I M R ++G P ++ L L ++R
Sbjct: 1024 DGRERLKYYKALSSAADGAAQESIELEM------RDRFGHFPQELQAFLGILRLKRYLGT 1077
Query: 563 IGITK 567
+ + K
Sbjct: 1078 LDVQK 1082
>gi|423618764|ref|ZP_17594597.1| transcription-repair coupling factor [Bacillus cereus VD115]
gi|401252606|gb|EJR58862.1| transcription-repair coupling factor [Bacillus cereus VD115]
Length = 1176
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETDDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E L +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETLKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVS--TIEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|218261990|ref|ZP_03476631.1| hypothetical protein PRABACTJOHN_02302 [Parabacteroides johnsonii DSM
18315]
gi|218223648|gb|EEC96298.1| hypothetical protein PRABACTJOHN_02302 [Parabacteroides johnsonii DSM
18315]
Length = 1126
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/569 (40%), Positives = 347/569 (60%), Gaps = 30/569 (5%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
++ ++ P LSKL T AWE+ K + K ++ + DL+ LY R ++K Y P +
Sbjct: 493 YKGKDSGEPPKLSKLG-TGAWEKMKERTKSKVKDIARDLILLYSKRKQEKGFAYSPDSFM 551
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ KA DV+ D+ E + PMDRLICGDVGFGKTEVA+RA F VS
Sbjct: 552 QHELEASFIYEDTPDQMKATADVKTDM-ENDRPMDRLICGDVGFGKTEVAIRAAFKAVSD 610
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ VL PT VLA QH+ SER +P ++ +SR ++ E E L +K G +NII
Sbjct: 611 NKQVAVLVPTTVLAFQHYQTFSERLKDFP-CRIEYISRARTAKEIRETLKDLKEGKINII 669
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH ++G V + +LGLL++DEEQ+FGV KEK+ K +VD LT++ATPIPRTL +L
Sbjct: 670 IGTHRIVGKDVTFKDLGLLIIDEEQKFGVSVKEKLRQLKANVDTLTMTATPIPRTLQFSL 729
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S I+TPPP R P++T + F+ + + AI +E+ R GQVF++ RI+ + E
Sbjct: 730 MGARDLSSITTPPPNRYPVQTEVERFNPDIIREAINFEMSRNGQVFFINNRIQNIYEMEA 789
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+++ P IA+ HGQ +LE+ + F +LI T+IVESG+D+ NANTII+ +
Sbjct: 790 LVKREVPDARIAVGHGQMEPDKLEKIILDFVNYEYDVLIATSIVESGIDVPNANTIIINN 849
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
QQFGL+ L+QLRGRVGR++++A YL P S L+ +A RL A+E ELG G +A
Sbjct: 850 AQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPLSSLTQEARRRLQAIENFSELGSGIHIAM 909
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G +Q+G + ++G + + ++L E++ ++ + + + P
Sbjct: 910 QDLDIRGAGNMLGAEQSGFIADLGYETYQKILEEAVDELKAEEFADLYSDATE----KRP 965
Query: 499 RLPSEYI--NHLENPMEMV-------NEAEKAA----------EQDIWCLMQFTESLRRQ 539
SEY+ ++E+ +E++ N++E+ + E+DI + FTE L+ +
Sbjct: 966 DTGSEYVRETYIESDLELMFPPTYIPNDSERVSLYRELDKMEEERDI---LAFTERLKDR 1022
Query: 540 YGKEPYSMEILLKKLYVRRMAADIGITKI 568
+GK P + L++ + +RRMA +G+ K+
Sbjct: 1023 FGKVPKEGKELIRVVRLRRMAKTLGMEKV 1051
>gi|295397825|ref|ZP_06807889.1| transcription-repair coupling factor [Aerococcus viridans ATCC 11563]
gi|294973922|gb|EFG49685.1| transcription-repair coupling factor [Aerococcus viridans ATCC 11563]
Length = 1233
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 245/622 (39%), Positives = 376/622 (60%), Gaps = 24/622 (3%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E + P+ L+K+ + W + K K I+ + +L++LY R QK + P AEF
Sbjct: 559 EGREPK-LNKMG-GSEWAKTKQKVSSKIEDIADELIDLYASREAQKGFAFGPDTAEQAEF 616
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY T DQ ++ ++++D+ E E PMDRL+ GDVGFGKTEVA+RA+F + GKQ
Sbjct: 617 ENAFPYTETDDQVRSIAEIKKDM-EVEKPMDRLLVGDVGFGKTEVAMRAVFKALMEGKQV 675
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT VLA+QH++ +ERF+ +P ++GLLSRF+SKA++ E + +K G ++I++GTH
Sbjct: 676 AFLVPTTVLAQQHYETFTERFADWP-FEIGLLSRFRSKAQQNETIAGLKKGQVDIVIGTH 734
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
+L V + +LGLLVVDEEQRFGVK KEK+ + K +VDVLTL+ATPIPRTL +++ G R
Sbjct: 735 RILSKDVEFLDLGLLVVDEEQRFGVKAKEKLKALKANVDVLTLTATPIPRTLNMSMLGVR 794
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T + + V AI+ E+ R GQVFY+ + +EE F+ +
Sbjct: 795 DLSVIETPPANRYPVQTFVMEQNYGAVKDAIEREIARDGQVFYLFNNVAQIEEKAAFINE 854
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +AIAHGQ QLE M F G +L+ T I+E+G+DI NANT++V+ +
Sbjct: 855 LVPEARVAIAHGQMTVVQLENVMMDFVLGEFDVLVTTTIIETGVDIPNANTLLVEGADRM 914
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y PDK +LS+ + +RL AL + ELG GF++A +D+
Sbjct: 915 GLSTLYQLRGRVGRSTRIAYAYFMYRPDK-MLSEVSEKRLMALRDFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G+QQ G V +VG DL+ +ML E++ + + + + V+I ++I+ +P
Sbjct: 974 SIRGAGNLLGKQQHGFVNSVGFDLYSQMLREAVQR-KRGILPAKKTEPVEISLSIDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQD-IWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
YI +E+ + D +W L + L +YG+ P ++LL+ ++ A
Sbjct: 1033 QTYIRDERQKVEIYKRVQAMTSVDEMWDL---DDELMDRYGEPPIETQLLLQVGAIKAAA 1089
Query: 561 ADIGIT---KIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLL- 615
IG+T +I AS + V N+ +K+ M ++ + N Q+ A L++
Sbjct: 1090 DKIGVTSIKRIAASNTIEVLFHENLEQKI---MTQAIFKALEDNPFRLAIKQVGAALMIS 1146
Query: 616 ----ELPREQLLNWIFQCLAEL 633
+L E+ L+++ Q +L
Sbjct: 1147 LGLNKLSTEEWLDYLLQFTTKL 1168
>gi|298373454|ref|ZP_06983443.1| transcription-repair coupling factor [Bacteroidetes oral taxon 274
str. F0058]
gi|298274506|gb|EFI16058.1| transcription-repair coupling factor [Bacteroidetes oral taxon 274
str. F0058]
Length = 1109
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 228/559 (40%), Positives = 339/559 (60%), Gaps = 18/559 (3%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPY 88
TLSKL T AWER K + K ++ + DL++LY RL+QK Y P + AE A F Y
Sbjct: 490 TLSKLG-TGAWERLKERTKTKVKDIARDLIKLYALRLEQKGFEYSPDSYLQAELEASFVY 548
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
E TPDQ KA DV+ D+ + PMDRL+CGDVGFGKTEVA+RA F + GKQ VL PT
Sbjct: 549 EDTPDQSKATADVKTDM-QSPKPMDRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVLVPT 607
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
+LA QH+ +ER YP + V LSR +S + +E + ++ G ++I++GTH +
Sbjct: 608 TILAFQHYKTFAERLKNYP-VTVEYLSRAKSPKQTKEIISRLREGKIDILIGTHKIANKD 666
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
VV+ +LGLLV+DEEQ+FGV KEK+ K +VD LTL+ATPIPRTL +L G RD S+I+
Sbjct: 667 VVFKDLGLLVIDEEQKFGVSVKEKLKELKANVDTLTLTATPIPRTLQFSLMGARDLSIIN 726
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
TPPP R P+ T L F +E + AI++E++R GQ+F+V +I+ L +++ P
Sbjct: 727 TPPPNRYPVVTELIRFDEETIREAIEFEMNRNGQIFFVNNKIQNLYLLQTKIKKIVPEAR 786
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
IA+AHGQ + QLE+T+ F IL+ T ++ESG+D+ N NTI V + FGL+ L+
Sbjct: 787 IAVAHGQMPTTQLEDTIIDFINYDYDILLATTVIESGIDMPNVNTIFVNNANHFGLSDLH 846
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
QLRGRVGR++++A+ YL D +SD A RL A+ +LG GF +A +D+ IRG G
Sbjct: 847 QLRGRVGRSNRKAYCYLITSDMKDVSDDARRRLQAISTFSDLGSGFNIAMQDLDIRGAGN 906
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKV--DEHCVI---------SVPYKSVQIDININ 497
+ G +Q+G + +G + + ++L E++ ++ DE I +V + +++
Sbjct: 907 MLGAEQSGFIAELGYETYQKILGEAVQELHRDEFADIIAETQQRQPTVFVDDCTFESDLD 966
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
PS+YI+ M + E + A+ + L +F LR ++G P + L+K + +R
Sbjct: 967 LMFPSDYISSTSERMALYGELDAIADDE--KLDEFKSRLRDRFGAIPTEADDLMKVIPLR 1024
Query: 558 RMAADIGITKI-YASGKMV 575
R A G+ +I +G+M
Sbjct: 1025 RRAIAFGVERILLRNGRMT 1043
>gi|300770435|ref|ZP_07080314.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
ATCC 33861]
gi|300762911|gb|EFK59728.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
ATCC 33861]
Length = 1112
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/560 (39%), Positives = 330/560 (58%), Gaps = 14/560 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQK 95
T WE+ K K ++ + DL++LY R Q + P E A F YE TPDQ+
Sbjct: 506 TDTWEKLKKTTKRKVKDIARDLIKLYAKRKAQTGNAFSPDTYLQNELEASFIYEDTPDQE 565
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
KA DV+RD+ E PMDRLICGDVGFGKTEVA+RA F V+ KQ VL PT +LA QH
Sbjct: 566 KATADVKRDM-ESPHPMDRLICGDVGFGKTEVAIRAAFKAVADSKQVAVLVPTTILALQH 624
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
+ +ER P + ++RF++ + +E L + G ++I++GTH L+ V + +LG
Sbjct: 625 YRTFTERLKGLP-CNIDYVNRFKTTKQIKETLAKLTEGKIDILIGTHRLVSKDVKFKDLG 683
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
L+++DEEQ+FGV KEK+ + +VD LTL+ATPIPRTL+ +L G RD S+ISTPPP R
Sbjct: 684 LMIIDEEQKFGVSVKEKLKVMRANVDSLTLTATPIPRTLHFSLMGARDLSIISTPPPNRQ 743
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P++T L F++ + A+ YELDRGGQVF++ R+ L++ +Q+ PG + +AHGQ
Sbjct: 744 PVQTELHVFNETLIQEAVSYELDRGGQVFFIHNRVADLKQLGALIQKLVPGARVGVAHGQ 803
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
LE+ M KF +L+ T I+E+GLDI NANTI++ FGL+ L+Q+RGRVG
Sbjct: 804 LEGDDLEDVMLKFISHEFDVLVATTIIEAGLDIPNANTIMINHAHMFGLSDLHQMRGRVG 863
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A YL P S L+ +A +RL+A+EE ELG GF +A +D+ IRG G + G +Q+
Sbjct: 864 RSNKKAFCYLLSPPLSTLTSEAYKRLSAIEEFSELGSGFNVAMRDLDIRGSGNLLGAEQS 923
Query: 456 GDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKS------VQIDININPRLPSEYINH 507
G + +G +++ ++L E++ K DE + K QID ++ +P EY+ +
Sbjct: 924 GFIAEIGFEMYHKILDEAIQELKDDEFTDLFADEKERKYVSFTQIDTDLEVLIPDEYVTN 983
Query: 508 LENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITK 567
+ + E K ++ L F S+ ++G P + L L ++ IG+ K
Sbjct: 984 ISERYNLYTELSKLENEE--QLTAFARSMEDRFGPIPREVFELFNTLRLQWYGKQIGLEK 1041
Query: 568 I-YASGKMVGMKTNMNKKVF 586
I Y + G N K +
Sbjct: 1042 ISYKKNTLKGFFLNNPKSSY 1061
>gi|225387033|ref|ZP_03756797.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme DSM
15981]
gi|225046851|gb|EEG57097.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme DSM
15981]
Length = 1221
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/546 (40%), Positives = 345/546 (63%), Gaps = 8/546 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K+P+ L++L + W + K++ K A+Q++ DL++LY R ++ Y K+ EF
Sbjct: 608 EAKKPK-LNRLG-GSEWSKTKSRVKGAVQEIAKDLVKLYAARQEKAGFQYGKDTVWQREF 665
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ A V+ D+ R+ MDRL+CGDVG+GKTEVALRA F V KQ
Sbjct: 666 EELFPYDETDDQLDAIDSVKHDMESRKI-MDRLVCGDVGYGKTEVALRAAFKAVQDSKQV 724
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
+ L PT +LA+QH++ +R +P ++V +LSRF + +++++ L+ ++ G ++I++GTH
Sbjct: 725 VYLVPTTILAQQHYNTFVQRMKDFP-VRVDMLSRFCTPSQQKKTLEDLRKGMVDIVIGTH 783
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
+L + + +LGLL+VDEEQRFGV KEKI K +VDVLTL+ATPIPRTL+++L G R
Sbjct: 784 RVLSKDMKFRDLGLLIVDEEQRFGVAHKEKIKQMKENVDVLTLTATPIPRTLHMSLAGIR 843
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S++ PP +R PI+T++ +++E + AI EL RGGQV+YV R+ ++E + +
Sbjct: 844 DMSVLEEPPVDRTPIQTYVMEYNEEMIREAINRELSRGGQVYYVYNRVTDIDEVANRVAA 903
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P + AHGQ +LE M F G I +L+ T I+E+GLDI NANT+IV D +
Sbjct: 904 LVPEAVVTFAHGQMREHELERIMADFINGEIDVLVSTTIIETGLDIPNANTMIVHDADRM 963
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR+++ ++A+L Y LL ++A +RL A+ E ELG G ++A +D+
Sbjct: 964 GLSQLYQLRGRVGRSNRTSYAFLMYKRDKLLKEEAEKRLQAIREFTELGSGIKIAMRDLE 1023
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G + G +Q G + VG DL+ +ML E++ + V S Y++V ++ +IN +P+
Sbjct: 1024 IRGAGNVLGAEQHGHMEAVGYDLYCKMLNEAVLALKGETVESETYETV-VECDINAYIPA 1082
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
YI + +++ +D + MQ + L ++G P S+E LLK ++ MA
Sbjct: 1083 YYIKNEYQKLDIYKRISAIETEDEYMDMQ--DELTDRFGDIPKSVENLLKIAALKAMAHR 1140
Query: 563 IGITKI 568
+T++
Sbjct: 1141 AYVTEV 1146
>gi|317120949|ref|YP_004100952.1| transcription-repair coupling factor [Thermaerobacter marianensis DSM
12885]
gi|315590929|gb|ADU50225.1| transcription-repair coupling factor [Thermaerobacter marianensis DSM
12885]
Length = 1219
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 235/560 (41%), Positives = 343/560 (61%), Gaps = 15/560 (2%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E +PR L+KL + W + K + K +++++ +L+ LY R + + P P +F
Sbjct: 574 EGHQPR-LAKLG-SGEWNKVKQRVKESVRELAGELLALYAARQTLRGHAFGPDTPWQRQF 631
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ TPDQ +A ++ D+ ER PMDRL+ GDVGFGKTEVA+RA F V GKQ
Sbjct: 632 EDAFPYQETPDQLEAIAAIKADM-ERPVPMDRLLVGDVGFGKTEVAMRAAFKAVQDGKQV 690
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
VL PT VLA QH ERF+ +P + + LSRF S AE+ E L + G ++I++GTH
Sbjct: 691 AVLVPTTVLAYQHERTFKERFAPFP-VTIRTLSRFASPAEQAEILTGLAQGTIDIVIGTH 749
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
L+ V + +LGLL++DEE RFGV KE++ K +VDVLTLSATPIPRTL++AL G R
Sbjct: 750 RLVQPDVRFKDLGLLIIDEEHRFGVAHKERLKQLKQNVDVLTLSATPIPRTLHMALAGIR 809
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S I TPP R P++T + + + V AI+ EL RGGQVFYV R++ ++ L++
Sbjct: 810 DLSRIDTPPENRFPVQTFVVEWHESLVRDAIQRELRRGGQVFYVHNRVQSIQAVRRRLER 869
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P A+AHGQ +LE M F G +L+CT I+ESGLD+ N NT+IV+D +F
Sbjct: 870 LVPEARFAVAHGQMGEGELERVMVDFMAGKADVLVCTTIIESGLDMPNVNTLIVEDADRF 929
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GLAQLYQLRGRVGR+D+ A+AY Y +L++ A +RL A+++ ELG GF+LA +D+
Sbjct: 930 GLAQLYQLRGRVGRSDRVAYAYFTYRRDKVLTEDAQKRLQAIKDFTELGAGFKLALRDLE 989
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G + G +Q G + +VG DL+ ++L E+++++ + K V +D+ ++ +P
Sbjct: 990 IRGAGNLLGAEQHGFMLSVGFDLYAQLLEEAVAELRGRRRPAR-LKPV-VDLVVDAHIPD 1047
Query: 503 EYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 559
YI +E VN AE A+ L + E+L+ +YG P + LL +R++
Sbjct: 1048 SYIRDARQKIEFYKRVNLAETPAD-----LAEVREALQDRYGPPPEPVRNLLALAEIRQL 1102
Query: 560 AADIGITKIYASGKMVGMKT 579
AA G+ +I G V ++
Sbjct: 1103 AARCGVFRIEQQGTRVDLEA 1122
>gi|218290671|ref|ZP_03494762.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius
LAA1]
gi|218239336|gb|EED06534.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius
LAA1]
Length = 1183
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/539 (40%), Positives = 336/539 (62%), Gaps = 11/539 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFPYEPTPD 93
++ W++ K + K +++ + DL++LY R + P + P P A+F FPYE TPD
Sbjct: 573 SSEWQKTKNRVKKSVRDIAGDLLKLYAKR--EATPGHAFSPDTPWQADFENMFPYEETPD 630
Query: 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 153
Q +A +++RD+ E+ PMDRL+CGDVG+GKTEVA+RA F V GKQ VL PT VLA+
Sbjct: 631 QLRAIAEIKRDM-EKPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVPTTVLAQ 689
Query: 154 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNN 213
QH++ ERF+ +P +K+ +LSRF+++ E +E L +K G ++I++GTH LL + V + +
Sbjct: 690 QHYETFKERFAGFP-VKIEMLSRFRTRKETQEVLKGLKEGTIDIVIGTHRLLQNSVQFKD 748
Query: 214 LGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE 273
LGLL+VDEEQRFGV KEK+ + +VD LTL+ATPIPRTL++++ G RD S+I TPP
Sbjct: 749 LGLLIVDEEQRFGVTHKEKLKQLRANVDCLTLTATPIPRTLHMSMLGVRDLSIIETPPEN 808
Query: 274 RLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAH 333
R P++T++ +++ V AI+ EL RGGQV++V ++ + + +Q P +++AH
Sbjct: 809 RFPVQTYVVEYNEGLVKEAIERELARGGQVYFVYNDVQTIHRMAERVQSLVPDARVSVAH 868
Query: 334 GQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGR 393
GQ +LE M F +G +L+ T I+E+GLDI N NT+IV D +FGL+QLYQLRGR
Sbjct: 869 GQMAEAELERVMLDFLEGEYDVLVTTTIIETGLDIPNVNTLIVYDADKFGLSQLYQLRGR 928
Query: 394 VGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQ 453
VGR+++ A+AY Y +LS+ A +RLAA++E ELG GF++A +D+ IRG G + G +
Sbjct: 929 VGRSNRIAYAYFTYQPAKVLSEVAEKRLAAIKEFTELGSGFKIAMRDLSIRGAGNLLGAE 988
Query: 454 QTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
Q G + +VG D++ E+L +++ ++ + P + ID+ + +P YI+ +
Sbjct: 989 QHGFINSVGFDMYTELLQQAIRELRGEQ-LEKPVEPT-IDVPVEAFIPDTYISDPSQKVA 1046
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASG 572
M A Q + + L +YG P + LL ++ +A I G
Sbjct: 1047 MYKRFR--AIQAVSEADDLEDELIDRYGDPPQEVRNLLDVTRLKSLAMQAHADHIATQG 1103
>gi|339006643|ref|ZP_08639218.1| transcription-repair-coupling factor [Brevibacillus laterosporus LMG
15441]
gi|338775852|gb|EGP35380.1| transcription-repair-coupling factor [Brevibacillus laterosporus LMG
15441]
Length = 1188
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/532 (40%), Positives = 334/532 (62%), Gaps = 7/532 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNP-AIAEFAAQFPYEPTPDQKKAF 98
W+R K+K + +++ + DL++LY R + + K+ EF A FPY+ T DQ +A
Sbjct: 575 WKRVKSKVETSVKDIAEDLIKLYAQREQAVGYSFNKDSLEQREFEAMFPYQETVDQLRAI 634
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+V+ D+ E + PMDRL+CGDVG+GKTEVA+RA F V GKQ +L PT +LA+QHF+
Sbjct: 635 TEVKADM-ESKRPMDRLVCGDVGYGKTEVAIRAAFKSVMDGKQVALLVPTTILAQQHFET 693
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
ERFS +P I+V +LSRF+S+ E+ + +K G +++++GTH LL +V+ +LGLL+
Sbjct: 694 FKERFSDFP-IRVEVLSRFRSRKEQNATMKGLKEGTVDVVIGTHRLLSKDIVFRDLGLLI 752
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 753 VDEEQRFGVSHKEKLKQLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 812
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ +S V AI+ EL R GQVF++ +++G+E+ + + P +A+AHGQ
Sbjct: 813 TYVLDYSPALVREAIERELAREGQVFFLYNQVQGIEQMAEHISALVPDARVAVAHGQMNE 872
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE + F G +L+ T I+E+G+DI N NT+I+ + + GL+QLYQLRGRVGR++
Sbjct: 873 SELERIILDFLDGNYDVLVSTTIIETGVDIPNVNTLIIYNADRMGLSQLYQLRGRVGRSN 932
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 933 RIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 992
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVIS--VPYKSVQIDININPRLPSEYINHLENPMEMVN 516
VG DL+ +ML E++ + P V+I++ I+ LPS+YI +EM
Sbjct: 993 NTVGFDLYTQMLKEAIDDLRGEVRTEEIAPVPPVEINLQIDAYLPSDYITDSRQKIEMYK 1052
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+ A I L + L ++G P ++ LL +R A + I +I
Sbjct: 1053 KF--VATSTIEELDDLADELIDRFGNIPSPVDNLLMISRLRIQAMEHHIVEI 1102
>gi|423343694|ref|ZP_17321407.1| transcription-repair coupling factor [Parabacteroides johnsonii
CL02T12C29]
gi|409214716|gb|EKN07725.1| transcription-repair coupling factor [Parabacteroides johnsonii
CL02T12C29]
Length = 1126
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/569 (40%), Positives = 347/569 (60%), Gaps = 30/569 (5%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
++ ++ P LSKL T AWE+ K + K ++ + DL+ LY R ++K Y P +
Sbjct: 493 YKGKDSGEPPKLSKLG-TGAWEKMKERTKSKVKDIARDLILLYSKRKQEKGFAYSPDSFM 551
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ KA DV+ D+ E + PMDRLICGDVGFGKTEVA+RA F VS
Sbjct: 552 QHELEASFIYEDTPDQMKATADVKTDM-ENDRPMDRLICGDVGFGKTEVAIRAAFKAVSD 610
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ VL PT VLA QH+ SER +P ++ +SR ++ E E L +K G +NII
Sbjct: 611 NKQVAVLVPTTVLAFQHYQTFSERLKDFP-CRIEYISRARTAKEIRETLKDLKEGKINII 669
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH ++G V + +LGLL++DEEQ+FGV KEK+ K +VD LT++ATPIPRTL +L
Sbjct: 670 IGTHRIVGKDVTFKDLGLLIIDEEQKFGVSVKEKLRQLKANVDTLTMTATPIPRTLQFSL 729
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S I+TPPP R P++T + F+ + + AI +E+ R GQVF++ RI+ + E
Sbjct: 730 MGARDLSSITTPPPNRYPVQTEVERFNPDIIREAINFEMSRNGQVFFINNRIQNIYEMEA 789
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+++ P IA+ HGQ +LE+ + F +LI T+IVESG+D+ NANTII+ +
Sbjct: 790 LVKREVPDARIAVGHGQMEPDKLEKIILDFVNYEYDVLIATSIVESGIDVPNANTIIINN 849
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
QQFGL+ L+QLRGRVGR++++A YL P S L+ +A RL A+E ELG G +A
Sbjct: 850 AQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPLSSLTQEARRRLQAIENFSELGSGIHIAM 909
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G +Q+G + ++G + + ++L E++ ++ + + + P
Sbjct: 910 QDLDIRGAGNMLGAEQSGFIADLGYETYQKILEEAVDELKAEEFADLYSDATE----KRP 965
Query: 499 RLPSEYI--NHLENPMEMV-------NEAEKAA----------EQDIWCLMQFTESLRRQ 539
SEY+ ++E+ +E++ N++E+ + E+DI + FTE L+ +
Sbjct: 966 DTGSEYVRETYIESDLELMFPPTYIPNDSERVSLYRELDKMEEERDI---LAFTERLKDR 1022
Query: 540 YGKEPYSMEILLKKLYVRRMAADIGITKI 568
+GK P + L++ + +RRMA +G+ K+
Sbjct: 1023 FGKVPKEGKELIRVVRLRRMAKTLGMEKV 1051
>gi|239787601|emb|CAX84069.1| Transcription-repair coupling factor [uncultured bacterium]
Length = 1178
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 226/517 (43%), Positives = 322/517 (62%), Gaps = 11/517 (2%)
Query: 76 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135
+P + EFAA FP+E TPDQ A V D+ + PMDRL+CGDVGFGKTEVALRA F
Sbjct: 617 DPLLQEFAAGFPFEETPDQTAAIEAVLEDMA-KSRPMDRLVCGDVGFGKTEVALRAAFRA 675
Query: 136 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 195
V GKQ VL+PT +L +QHF+ + R + YP I V +LSRF++ AE+++ ++MI HG +
Sbjct: 676 VMDGKQVAVLSPTTILTQQHFETFARRLAAYP-ITVEILSRFRTPAEQKKAVEMIAHGGV 734
Query: 196 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 255
+I+VGTH LL VV+ +LGLLVVDEEQRFGV KE+I + +VD+LTL+ATPIPRTL+
Sbjct: 735 DIVVGTHRLLQKDVVFKDLGLLVVDEEQRFGVVHKERIKQMRATVDILTLTATPIPRTLH 794
Query: 256 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 315
LA++G RD S+I+TPP RL I+T + + ++KV A+ E+ RGGQVF+V ++ +++
Sbjct: 795 LAMSGLRDISIIATPPINRLAIRTFVLQYDRQKVREAVLREIYRGGQVFFVHNHVQDIDK 854
Query: 316 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 375
L + P I +AHGQ +LE+ M F + +L+CT I+E+G+DI ANTII
Sbjct: 855 MAVELTELVPEARIGVAHGQMREGRLEKIMLSFYRQEFNLLLCTTIIENGVDIPTANTII 914
Query: 376 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 435
+ +FGLAQL+QLRGRVGR+ A+AYLF P LS+ AL RL A+E ELG GF
Sbjct: 915 IHRADRFGLAQLHQLRGRVGRSKHRAYAYLFIPHPQTLSEDALRRLEAIESMGELGAGFT 974
Query: 436 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFES---LSKVDEHCVIS----VPYK 488
LA DM IRG G I GE+Q+G + VG DL+ +ML E+ L+ + H + V
Sbjct: 975 LATHDMEIRGAGNILGEEQSGQIREVGFDLYNQMLKEAVDNLTAGNGHTPATAKPEVEEF 1034
Query: 489 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 548
S I+++I+ +P +Y+ + + + D + + L ++G P S
Sbjct: 1035 SPVINLHISTHIPEDYVPDVRQRLTLYKRIATLETAD--DIREMRAELTDRFGHLPESTS 1092
Query: 549 ILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKV 585
LL+ + +++ I I KI A K ++ + V
Sbjct: 1093 HLLRVMGLKQACRRIKILKIDAGPKGATLQFHATPNV 1129
>gi|375306206|ref|ZP_09771507.1| transcription-repair coupling factor [Paenibacillus sp. Aloe-11]
gi|375081793|gb|EHS60000.1| transcription-repair coupling factor [Paenibacillus sp. Aloe-11]
Length = 1175
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/490 (42%), Positives = 318/490 (64%), Gaps = 13/490 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNPAI 79
+E K P+ + KL W R K+K + ++Q + DL++LY R Q P + +P
Sbjct: 547 SEDKEPK-IYKLG-GNEWTRVKSKVRSSVQDIADDLIKLYAER--QSAPGFAFEKDSPEQ 602
Query: 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 139
EF FPYE T DQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F G
Sbjct: 603 QEFEDMFPYEETRDQVRAIEEIKKDM-EQSRPMDRLLCGDVGYGKTEVAIRAAFKSAIEG 661
Query: 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 199
KQ VL PT +LA+QH++ ERFS YP + +LSRF+++ E+ E ++ G ++I++
Sbjct: 662 KQVAVLVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRTRKEQNETTKGVRQGTVDIVI 720
Query: 200 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 259
GTH LL +V+ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++
Sbjct: 721 GTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML 780
Query: 260 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 319
G RD S+I TPP R P++T++ S+ V AI+ E+ RGGQV+Y+ R++G++E
Sbjct: 781 GVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIEREMARGGQVYYLYNRVQGIQEMAAE 840
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
+ P + + HGQ +LE+T+ F G +L+ T+I+E+G+DI N NT+IV D
Sbjct: 841 INALVPEAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA 900
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 439
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E ELG GF++A +
Sbjct: 901 DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR 960
Query: 440 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCV----ISVPYKSVQIDIN 495
D+ IRG G + G +Q G + +VG DL+ +ML E ++K + +S S ID++
Sbjct: 961 DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVSVLGEEDLSNRNWSTSIDLS 1020
Query: 496 INPRLPSEYI 505
++ LP +YI
Sbjct: 1021 VDAYLPGDYI 1030
>gi|402829459|ref|ZP_10878335.1| transcription-repair coupling factor [Slackia sp. CM382]
gi|402284440|gb|EJU32943.1| transcription-repair coupling factor [Slackia sp. CM382]
Length = 1150
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/475 (44%), Positives = 307/475 (64%), Gaps = 5/475 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E PR L++L +T+ W R +K + + +++ DL+++Y R Y P NP E
Sbjct: 544 EGSSPR-LTRL-NTSDWSRAMSKARASTKQLAFDLVDVYTRRSSVPGFRYSPDNPWQKEM 601
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY TPDQ A +V+ D+ + PMDRL+CGDVGFGKTEVALRA F V GKQ
Sbjct: 602 EDAFPYAETPDQLSAIAEVKADM-QSSRPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQV 660
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
MVL PT +LA+QH+ +RF + + V +LSRF++ AE++E L G ++++VGTH
Sbjct: 661 MVLCPTTILAQQHYATFKDRFEPF-HVSVEVLSRFRTPAEQKETLAGFADGTVDVLVGTH 719
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V +LGL+++DEEQRFGV KE++ + + +DVLTLSATPIPRTL ++L+G R
Sbjct: 720 RLLSRDVNPRDLGLVIIDEEQRFGVGHKEQLKNLREHIDVLTLSATPIPRTLQMSLSGVR 779
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D SLI TPP ER P++ H+ + + V AI+ E+ RGGQV+YV R++ +E+ +D ++
Sbjct: 780 DTSLILTPPDERRPVEVHVGEWDPDIVSDAIRREMQRGGQVYYVSNRVRTIEDALDRVRD 839
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
A P I AHG+ +LE ME FA GAI +L+ T I+ESG+D + NT++++D Q+
Sbjct: 840 AAPEARIGAAHGKMGKEELEAVMEDFAAGAIDVLVATTIIESGIDNPHTNTLVIEDSQRL 899
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GLAQ+YQL+GRVGR+ +A+AY +P + L+++A RL A++E RELG G Q+A +D+
Sbjct: 900 GLAQMYQLKGRVGRSSLQAYAYFMFPSEVPLTEEATARLQAIDEHRELGSGMQVAMRDLE 959
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 497
IRG G++ G +Q+G V VG DLF +ML + + E + DI +N
Sbjct: 960 IRGAGSLLGAEQSGSVSAVGFDLFAQMLATAFNDAREGRPLDDRAPQALSDITLN 1014
>gi|421874174|ref|ZP_16305781.1| transcription-repair coupling factor [Brevibacillus laterosporus
GI-9]
gi|372456829|emb|CCF15330.1| transcription-repair coupling factor [Brevibacillus laterosporus
GI-9]
Length = 1188
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/532 (40%), Positives = 334/532 (62%), Gaps = 7/532 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNP-AIAEFAAQFPYEPTPDQKKAF 98
W+R K+K + +++ + DL++LY R + + K+ EF A FPY+ T DQ +A
Sbjct: 575 WKRVKSKVETSVKDIAEDLIKLYAQREQAVGYSFNKDSLEQREFEAMFPYQETVDQLRAI 634
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+V+ D+ E + PMDRL+CGDVG+GKTEVA+RA F V GKQ +L PT +LA+QHF+
Sbjct: 635 TEVKADM-ESKRPMDRLVCGDVGYGKTEVAIRAAFKSVMDGKQVALLVPTTILAQQHFET 693
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
ERFS +P I+V +LSRF+S+ E+ + +K G +++++GTH LL +V+ +LGLL+
Sbjct: 694 FKERFSDFP-IRVEVLSRFRSRKEQNATMKGLKEGTVDVVIGTHRLLSKDIVFRDLGLLI 752
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 753 VDEEQRFGVSHKEKLKQLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 812
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ +S V AI+ EL R GQVF++ +++G+E+ + + P +A+AHGQ
Sbjct: 813 TYVLDYSPALVREAIERELAREGQVFFLYNQVQGIEQMAEHISALVPDARVAVAHGQMNE 872
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE + F G +L+ T I+E+G+DI N NT+I+ + + GL+QLYQLRGRVGR++
Sbjct: 873 SELERIILDFLDGNYDVLVSTTIIETGVDIPNVNTLIIYNADRMGLSQLYQLRGRVGRSN 932
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +L++ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 933 RIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 992
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVIS--VPYKSVQIDININPRLPSEYINHLENPMEMVN 516
VG DL+ +ML E++ + P V+I++ I+ LPS+YI +EM
Sbjct: 993 NTVGFDLYTQMLKEAIDDLRGEVRTEEIAPVPPVEINLQIDAYLPSDYITDSRQKIEMYK 1052
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+ A I L + L ++G P ++ LL +R A + I +I
Sbjct: 1053 KF--VATSTIEELDDLADELIDRFGNIPSPVDNLLMISRLRIQAMEHHIVEI 1102
>gi|401680231|ref|ZP_10812153.1| transcription-repair coupling factor [Veillonella sp. ACP1]
gi|400218727|gb|EJO49600.1| transcription-repair coupling factor [Veillonella sp. ACP1]
Length = 1096
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 239/552 (43%), Positives = 345/552 (62%), Gaps = 17/552 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAE 81
NE PR + K+ + W + TK + +I + L+ELY R + + P P E
Sbjct: 483 NEGDVPR-IHKMGGSD-WRKAVTKTQKSIDDLADKLVELYAKREITEGFAFLPDQPWQQE 540
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPYE T DQ +A +++ + ER TPMDRL+ GDVGFGKTEVA+RAIF V +GKQ
Sbjct: 541 FEDAFPYEETEDQLQATREIKESM-ERPTPMDRLLAGDVGFGKTEVAMRAIFKAVVSGKQ 599
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
VL PT VLA+QH+ RF+ + +KV +L+RF+S AEK+E L I++G ++I++GT
Sbjct: 600 VAVLVPTTVLAQQHYQTFLNRFNPF-GVKVDVLNRFRSTAEKKEVLKGIENGSIDILIGT 658
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
HSLL +V + +LG LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L G
Sbjct: 659 HSLLNKKVKFKDLGFLVVDEEQRFGVAQKEKWKEWANNIDVLTLSATPIPRTLHMSLVGV 718
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
R+ S+ISTPP +RLP++T++ + + AIK E+ RGGQV++V R+ + + L+
Sbjct: 719 REMSVISTPPEDRLPVQTYVVEYDMNLIADAIKREIARGGQVYFVYNRVASINHMGELLE 778
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
QA P + A+AHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D +
Sbjct: 779 QALPDLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADR 838
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEKD 440
GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA +D
Sbjct: 839 LGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-MLSEAAEKRLKAIEEFTELGAGFKLAMRD 897
Query: 441 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 500
+ IRG G + G QQ G++ +VG ++ ML E+++K V+ ID+ I+ +
Sbjct: 898 LEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQNKEVVKEVVPDPAIDLEIDAFI 957
Query: 501 PSEYINHLENPME----MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
YI + M+ KA D+ T+ L ++G ++ LL+ +
Sbjct: 958 DDAYIKDSARKISVYQRMLQIKNKAQLDDL------TDELIDRFGTPTDPVDRLLRVAQI 1011
Query: 557 RRMAADIGITKI 568
+ A +GI I
Sbjct: 1012 KEQARLLGIKSI 1023
>gi|384134028|ref|YP_005516742.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339288113|gb|AEJ42223.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 1147
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/539 (40%), Positives = 336/539 (62%), Gaps = 11/539 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFPYEPTPD 93
++ W++ K + K +++ + DL++LY R + P + P P A+F FPYE TPD
Sbjct: 580 SSEWQKTKNRVKKSVRDIAGDLLKLYAKR--EATPGHAFSPDTPWQADFENMFPYEETPD 637
Query: 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 153
Q +A +++RD+ E+ PMDRL+CGDVG+GKTEVA+RA F V GKQ VL PT VLA+
Sbjct: 638 QLRAIAEIKRDM-EKPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVPTTVLAQ 696
Query: 154 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNN 213
QH++ ERF+ +P +K+ +LSRF+++ E +E L +K G ++I++GTH LL + V + +
Sbjct: 697 QHYETFKERFAGFP-VKIEMLSRFRTRKETQEVLKGLKEGTIDIVIGTHRLLQNSVQFKD 755
Query: 214 LGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE 273
LGLL+VDEEQRFGV KEK+ + +VD LTL+ATPIPRTL++++ G RD S+I TPP
Sbjct: 756 LGLLIVDEEQRFGVTHKEKLKQLRANVDCLTLTATPIPRTLHMSMLGVRDLSIIETPPEN 815
Query: 274 RLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAH 333
R P++T++ +++ V AI+ EL RGGQV++V ++ + + +Q P +++AH
Sbjct: 816 RFPVQTYVVEYNEGLVKEAIERELARGGQVYFVYNDVQTIHRMAERVQSLVPDARVSVAH 875
Query: 334 GQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGR 393
GQ +LE M F +G +L+ T I+E+GLDI N NT+IV D +FGL+QLYQLRGR
Sbjct: 876 GQMAEAELERVMLDFLEGEYDVLVTTTIIETGLDIPNVNTLIVYDADKFGLSQLYQLRGR 935
Query: 394 VGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQ 453
VGR+++ A+AY Y +LS+ A +RLAA++E ELG GF++A +D+ IRG G + G +
Sbjct: 936 VGRSNRIAYAYFTYQPAKVLSEVAEKRLAAIKEFTELGSGFKIAMRDLSIRGAGNLLGAE 995
Query: 454 QTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
Q G + +VG D++ E+L +++ ++ + P + ID+ + +P YI+ +
Sbjct: 996 QHGFINSVGFDMYTELLQQAIRELRGEQ-LEKPVEPT-IDVPVEAYIPDTYISDPSQKVA 1053
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASG 572
M A Q + + L +YG P + LL ++ +A I G
Sbjct: 1054 MYKRFR--AIQAVSEADDLEDELIDRYGDPPQEVRNLLDVTRLKSLAMQAHADHIATQG 1110
>gi|434382867|ref|YP_006704650.1| transcription-repair coupling factor [Brachyspira pilosicoli WesB]
gi|404431516|emb|CCG57562.1| transcription-repair coupling factor [Brachyspira pilosicoli WesB]
Length = 1196
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/516 (42%), Positives = 330/516 (63%), Gaps = 15/516 (2%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
+AW++ K+K + DL+++Y R Y P +F A F YE T DQ +
Sbjct: 561 SAWDKIKSKAREDALATARDLIKIYAIRSNVHGNIYGPDTQWQDDFEASFNYEETVDQLR 620
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A D++ D+ E + MDRL+CGDVGFGKTEVA RAIF V AGKQ +L PT +L++QH+
Sbjct: 621 AINDIKSDM-ESDKMMDRLVCGDVGFGKTEVAFRAIFKAVMAGKQCAILCPTTILSQQHY 679
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ +RF +P +++ +L+RF S + +++ +M+ +G +II+GTH LL + + NLGL
Sbjct: 680 NNAKKRFEDFP-VRIEVLNRFISSRQAKKNKEMLANGSCDIIIGTHMLLSDDIKFKNLGL 738
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
+V+DEEQRFGVK KE + + DVLTLSATPIPRTL +ALTG RD S+I TPP R+P
Sbjct: 739 IVIDEEQRFGVKHKEALKKLRFETDVLTLSATPIPRTLNMALTGIRDISIIETPPLNRIP 798
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
+KT++ F+++ V++AI+ EL R GQVFY+ RI +E +++ P I +AHG+
Sbjct: 799 VKTYVMEFNEKTVVNAIERELKRNGQVFYLYNRIDTIESFALMIKKLCPKASICVAHGRM 858
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
QLE+ M F IL+ T I+E+G+DI NANTI++ + GL++LYQLRGRVGR
Sbjct: 859 TGIQLEKIMSDFINHKYDILVSTTIIENGIDIPNANTILIDSANKLGLSELYQLRGRVGR 918
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+D+EA+AY+FYP+ L++ A +RL A+ E +LG GF++A +D+ IRG G I G++Q+G
Sbjct: 919 SDREAYAYMFYPENLALTEVAYKRLQAISEHTDLGAGFKIAMRDLEIRGAGNILGKEQSG 978
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ VG +L+ +ML E+ ++ + + V + +V ID N +P EYI+ +P E ++
Sbjct: 979 MIYQVGYELYTQMLEEATNEY-KGEIKEVTFDTV-IDFKHNLFIPDEYIS---DPKEKIS 1033
Query: 517 EAE----KAAEQDIWCLMQFTESLRRQYGKEPYSME 548
+ +++DI ++ + +YGK P ME
Sbjct: 1034 VYKLIMRSQSDEDIDIAKEY---MIDKYGKMPKEME 1066
>gi|365839574|ref|ZP_09380809.1| TRCF domain protein [Anaeroglobus geminatus F0357]
gi|364564415|gb|EHM42182.1| TRCF domain protein [Anaeroglobus geminatus F0357]
Length = 669
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 231/560 (41%), Positives = 338/560 (60%), Gaps = 15/560 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAE 81
NE + PR L K+ W++ + K + +I + L +LY R +P + P E
Sbjct: 59 NEGEAPR-LHKMGGAD-WKKARAKAQKSIDSLAEKLADLYAKREIIDGYAFPPDTPFQQE 116
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPYE TPDQ KA V++ + E+ PMD L+CGDVGFGKTEVA+RA F V GKQ
Sbjct: 117 FEETFPYEETPDQLKAVAAVKKSM-EKPLPMDCLVCGDVGFGKTEVAIRAAFKAVMGGKQ 175
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
VL PT VLA+QH+ +ERF + I+ +L+RF+S E++ L + G +I++GT
Sbjct: 176 VAVLVPTTVLAQQHYQTFTERFRPF-GIECDVLNRFRSLKERKAILTRLSEGKADILIGT 234
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
HS+L VV+ ++GLL+VDEEQRFGV QKEK S+ +DVLTLSATPIPRTL+++L
Sbjct: 235 HSILNKNVVFKDVGLLIVDEEQRFGVAQKEKWKSWATGIDVLTLSATPIPRTLHMSLVHL 294
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
R LI TPP ER+P++T+++A++ + V A+ E RGGQVF+V R+ +E L+
Sbjct: 295 RQLCLIETPPTERIPVQTYVTAYNADIVRDAVMREKRRGGQVFFVYNRVASIERMKAELE 354
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + + +AHGQ LE TM F +G +L+C+++VE+GLDI NANTIIV D +
Sbjct: 355 ALLPDITVGMAHGQMPGSLLEATMFDFYEGNYDLLLCSSLVENGLDIANANTIIVYDADR 414
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
FGL+QLYQ+RGRVGR+ + A+AY FY +LS+ A +RL A++E ELG GF++A +D+
Sbjct: 415 FGLSQLYQMRGRVGRSRRMAYAYFFYRRNKILSEVAEKRLQAVKEFTELGSGFKIAMRDL 474
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G +Q G++ +VG ++ ML +++++ P +++ + +
Sbjct: 475 EIRGAGNLLGREQHGNIASVGFAMYVHMLETAIARLRGEETRERPPVRTVMEVQADAYID 534
Query: 502 SEYINHLENPMEMVNE---AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
YI H +EM E A+ D + E L +YGK + LLK +R
Sbjct: 535 DAYIGHGGQKIEMYQRLALIETTAQLD-----ELEEELFDRYGKPTEPVRTLLKATRLRL 589
Query: 559 MAADIGITKIYASGKMVGMK 578
A + IT+I S K G++
Sbjct: 590 CAQHLQITRI--SQKTAGLE 607
>gi|114570035|ref|YP_756715.1| transcription-repair coupling factor [Maricaulis maris MCS10]
gi|114340497|gb|ABI65777.1| transcription-repair coupling factor [Maricaulis maris MCS10]
Length = 1172
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 231/543 (42%), Positives = 330/543 (60%), Gaps = 18/543 (3%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNP-AIAEFAAQFPYEPTPDQKKA 97
AW+ RK K K ++ M L+++ RL +K P + A EF + FPY T DQ A
Sbjct: 569 AWQARKAKAKKRLRDMADQLIKIAAERLARKAEPIETSSGAFDEFCSTFPYPETDDQLNA 628
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157
DV DL R PMDRLICGDVGFGKTEVALRA F V +G+Q ++APT +LA+QHF
Sbjct: 629 IDDVLTDLG-RGRPMDRLICGDVGFGKTEVALRAAFVVALSGQQVAIVAPTTLLARQHFK 687
Query: 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217
S+RF +P +KV LLSR + E + D + G + I++GTH+LL V + +LGLL
Sbjct: 688 TFSDRFRGWP-VKVRLLSRLVTAKEAKATRDELAAGQVEIVIGTHALLAKTVKFRDLGLL 746
Query: 218 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 277
VVDEEQ FGVK KE++ + V VLTL+ATPIPRTL LALTG RD S+I+TPP +RL +
Sbjct: 747 VVDEEQHFGVKHKERLKELRSDVHVLTLTATPIPRTLQLALTGIRDLSIIATPPVDRLAV 806
Query: 278 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 337
+T+++ F V A+ E RGGQ F+V+PRI LEE FL+++ P V AHGQ
Sbjct: 807 RTYVAPFDPVSVREALLREKYRGGQAFFVVPRITDLEETTRFLRESVPEVSFVAAHGQMA 866
Query: 338 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 397
+ QLE+ M F +G +L+ T IVESG+DI ANT+I+ +FGL+QLYQLRGRVGR+
Sbjct: 867 ASQLEDIMTAFYEGRYDVLLSTTIVESGIDIPTANTLIIHRADRFGLSQLYQLRGRVGRS 926
Query: 398 DKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 457
A+AYL P + +++ A +RL ++ LG GF LA D+ +RG G + GE+Q+G
Sbjct: 927 KTRAYAYLTTPMRQKITESAEKRLKVMQSLDSLGAGFTLASHDLDLRGGGNLLGEEQSGH 986
Query: 458 VGNVGVDLFFEMLFESLSKV----DEHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+ +VGV+L+ ML E+++ + DE + S QI+ +P Y+ L+ ++
Sbjct: 987 IRDVGVELYQSMLEEAVASLRSGGDE---LEEGDWSPQINAGGAVLIPDHYVPDLDVRLQ 1043
Query: 514 M---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYA 570
+ ++ + E++ + L ++G P +E LL+ + V+ + GI K+ A
Sbjct: 1044 LYRRLSSLDNKTERE-----GYAAELIDRFGPLPKEVETLLRVVAVKALCKKAGIEKVDA 1098
Query: 571 SGK 573
K
Sbjct: 1099 GPK 1101
>gi|303231983|ref|ZP_07318691.1| transcription-repair coupling factor [Veillonella atypica
ACS-049-V-Sch6]
gi|302513412|gb|EFL55446.1| transcription-repair coupling factor [Veillonella atypica
ACS-049-V-Sch6]
Length = 1096
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 239/552 (43%), Positives = 345/552 (62%), Gaps = 17/552 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAE 81
NE PR + K+ + W + TK + +I + L+ELY R + + P P E
Sbjct: 483 NEGDVPR-IHKMGGSD-WRKAVTKTQKSIDDLADKLVELYAKREITEGFAFLPDQPWQQE 540
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPYE T DQ +A +++ + ER TPMDRL+ GDVGFGKTEVA+RAIF V +GKQ
Sbjct: 541 FEDAFPYEETEDQLQATREIKESM-ERPTPMDRLLAGDVGFGKTEVAMRAIFKAVVSGKQ 599
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
VL PT VLA+QH+ RF+ + +KV +L+RF+S AEK+E L I++G ++I++GT
Sbjct: 600 VAVLVPTTVLAQQHYQTFLNRFNPF-GVKVDVLNRFRSTAEKKEVLKGIENGSIDILIGT 658
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
HSLL +V + +LG LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L G
Sbjct: 659 HSLLNKKVKFKDLGFLVVDEEQRFGVAQKEKWKEWANNIDVLTLSATPIPRTLHMSLVGV 718
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
R+ S+ISTPP +RLP++T++ + + AIK E+ RGGQV++V R+ + + L+
Sbjct: 719 REMSVISTPPEDRLPVQTYVVEYDMNLIADAIKREIARGGQVYFVYNRVASINHMGELLE 778
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
QA P + A+AHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D +
Sbjct: 779 QALPDLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADR 838
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEKD 440
GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA +D
Sbjct: 839 LGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-MLSEAAEKRLKAIEEFTELGAGFKLAMRD 897
Query: 441 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 500
+ IRG G + G QQ G++ +VG ++ ML E+++K V+ ID+ I+ +
Sbjct: 898 LEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQNKEVVKEVVPDPAIDLEIDAFI 957
Query: 501 PSEYINHLENPME----MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
YI + M+ KA D+ T+ L ++G ++ LL+ +
Sbjct: 958 DDAYIKDSARKISVYQRMLQIKNKAQLDDL------TDELIDRFGTPTDPVDRLLRVAQI 1011
Query: 557 RRMAADIGITKI 568
+ A +GI I
Sbjct: 1012 KEQARLLGIKSI 1023
>gi|410453266|ref|ZP_11307224.1| transcription-repair coupling factor [Bacillus bataviensis LMG 21833]
gi|409933389|gb|EKN70317.1| transcription-repair coupling factor [Bacillus bataviensis LMG 21833]
Length = 1178
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/559 (40%), Positives = 344/559 (61%), Gaps = 8/559 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ + KL T W++ K K + ++Q + DL++LY R + P E
Sbjct: 558 SEGKEPK-VYKLGGTD-WKKVKKKVESSVQDIADDLIKLYAEREAAVGYGFSPDGDMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F F Y+ T DQ ++ +++++D+ ER PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FETSFAYQETEDQLRSIVEIKKDM-ERLRPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QHF+ + ERF YP I +GLLSRF+SK ++ E + +K G ++I+VGT
Sbjct: 675 VAFLVPTTILAQQHFETLRERFQDYP-INIGLLSRFRSKKQQTETMKGLKAGTVDIVVGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL +VY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDIVYRDLGLLIIDEEQRFGVTHKEKIKKLKTNVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL R GQV+++ R++ +E + +
Sbjct: 794 RDLSVIETPPENRFPVQTYVMEYNGSLVREAIERELARDGQVYFLYNRVEDIERKAEEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHGQ +LE M F G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDARVTCAHGQMTENELESVMISFLAGEFDVLVSTTIIETGVDIPNVNTLIVFDADR 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ V KSV+ID+ I+ +P
Sbjct: 974 SIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEARRGELGAEVK-KSVEIDLEIDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI +EM A + + + + E + ++G+ P ++ L + ++ +
Sbjct: 1033 DTYIKDGHQKIEMYKRFR--AIESLEDMEELQEEMHDRFGEYPAEVDYLFQIAEIKVHSL 1090
Query: 562 DIGITKIYASGKMVGMKTN 580
G+ +I + + V + N
Sbjct: 1091 INGVEQIKQAKQEVTVLVN 1109
>gi|242279458|ref|YP_002991587.1| transcription-repair coupling factor [Desulfovibrio salexigens DSM
2638]
gi|242122352|gb|ACS80048.1| transcription-repair coupling factor [Desulfovibrio salexigens DSM
2638]
Length = 1149
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/531 (41%), Positives = 327/531 (61%), Gaps = 11/531 (2%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W + + K + AI+K+ +L+E+Y +R K Y P + EF + F +E TPDQ+KA
Sbjct: 559 WAKTREKARKAIEKIAGELVEMYAYRKIAKGYAYGPLDEMYWEFESTFGFEETPDQEKAI 618
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
DV RD+ E PMDRL+CGDVGFGKTEVALRA F V GKQ ++L PT VLA+QH+
Sbjct: 619 QDVFRDM-ESPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVVLLCPTTVLAEQHYQT 677
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+R +P + VG+LSRF K+ ++ L+ + G L+I++GTH +L V NLGLL+
Sbjct: 678 FVQRMEGFP-VTVGMLSRFVPKSRQKRVLEQMAAGELDILIGTHRVLSKDVEAPNLGLLI 736
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV+ KE++ + ++D LTL+ATPIPRTL L+L+G R S I TPP +R P++
Sbjct: 737 LDEEQRFGVRHKERVKEMRKNIDALTLTATPIPRTLQLSLSGVRSLSTIETPPVDRKPVE 796
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T L + + S + EL+RGGQVF+V R++GLE ++F+++ P I +AHGQ
Sbjct: 797 TALIERDEAMLASVVARELERGGQVFWVHNRVQGLERVVEFVKKLAPDAKIGMAHGQMTE 856
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+ LEET+ KF + IL+ T I+ESGLD NANT+IV Q FGL QLYQLRGRVGR+
Sbjct: 857 KNLEETIHKFWHKELDILVATAIIESGLDFPNANTLIVDQAQMFGLGQLYQLRGRVGRST 916
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
++A+AY LS++A R+ + + LG GF++A +D+ +RG G I GE Q+G +
Sbjct: 917 RQAYAYFAVSSLDSLSEKAKRRMQIILQLDYLGAGFKVAMEDLRLRGAGNILGEVQSGQM 976
Query: 459 GNVGVDLFFEMLFESLSKV--DEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
VG+DLF EML E + ++ D+ +S P +++ LP +++ +
Sbjct: 977 AKVGLDLFLEMLDEEVRRIKGDDSAQVSDP----EMNFVFKAHLPEDFVPDARERLRYYR 1032
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITK 567
A + + + ++ ++G P +E + LY++R A +G+ +
Sbjct: 1033 ALSSADSEA--GIEELAAEIKDRFGHFPEEVENFISVLYLKRTLARLGVVR 1081
>gi|408371977|ref|ZP_11169730.1| transcription-repair coupling factor [Galbibacter sp. ck-I2-15]
gi|407742589|gb|EKF54183.1| transcription-repair coupling factor [Galbibacter sp. ck-I2-15]
Length = 1126
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 225/552 (40%), Positives = 337/552 (61%), Gaps = 17/552 (3%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQK 95
+ AW+ K K K ++++ +L++LY R +K Y P + E A F YE TPDQ
Sbjct: 516 SNAWKNLKKKTKAKVKEIAFNLIKLYAKRKTEKGFQYGPDSYLQNELEASFIYEDTPDQS 575
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
KA +V+ D+ E E PMDRL+CGDVGFGKTEVA+RA F V GKQ VL PT +LA QH
Sbjct: 576 KATEEVKADM-ESEQPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQH 634
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
SER P + V L+RF++ EK E L+ + G ++II+GTH L+ V + +LG
Sbjct: 635 HKTFSERLQNMP-VTVDYLNRFRTAKEKRETLENLATGKVDIIIGTHQLVNKNVKFKDLG 693
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL+VDEEQ+FGV K+K+ + K +V+VLTL+ATPIPRTL +L RD S+I+TPPP R
Sbjct: 694 LLIVDEEQKFGVSVKDKLKTIKENVEVLTLTATPIPRTLQFSLMAARDLSVITTPPPNRY 753
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
PI +++ ++E + AI YE+ RGGQV+++ RI+ ++E +Q+ P I I HGQ
Sbjct: 754 PIDSNVIQLNEEIIRDAISYEIQRGGQVYFIHNRIENIKEVAGMIQRLVPDARIGIGHGQ 813
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
++LE+ M +F GA +L+ T+I+ESGLD+ NANTI + + FGL+ L+Q+RGRVG
Sbjct: 814 MEGKKLEDLMLRFMNGAFDVLVATSIIESGLDVPNANTIFINNANNFGLSDLHQMRGRVG 873
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A Y P S ++D A +R+ ALE+ ELG GF +A KD+ IRG G I G +Q+
Sbjct: 874 RSNKKAFCYFITPPYSAMTDDARKRIQALEQFTELGSGFHIAMKDLEIRGAGDILGGEQS 933
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVIS---------VPYKSVQIDININPRLPSEYIN 506
G + +G D + +++ E++ ++ E+ V K Q+D + P YIN
Sbjct: 934 GFINEIGFDTYQKIMNEAIVELKENEFADLYPQEEGDKVYVKETQLDTDFELLFPDHYIN 993
Query: 507 HLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
+ +++ NE + E D+ M + L ++G P + LL + ++ +A +G+
Sbjct: 994 TVTERLKLYNELSNIETETDLQAYM---DRLIDRFGPLPEEAKDLLNSVRIKWIATQMGL 1050
Query: 566 TK-IYASGKMVG 576
+ + GKMVG
Sbjct: 1051 ERLLLKQGKMVG 1062
>gi|365903691|ref|ZP_09441514.1| transcription-repair coupling factor [Lactobacillus malefermentans
KCTC 3548]
Length = 1174
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/550 (39%), Positives = 340/550 (61%), Gaps = 9/550 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E K+PR ++KL + W + K+K I+ + DL+ELY R +K +P++ A
Sbjct: 552 FVSSEDKKPR-VNKLG-GSEWAKTKSKVASKIEDIADDLVELYAKREAEKGFAFPRDDAY 609
Query: 80 AE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E F FPY TPDQ ++ +++ D+ ER PMDRL+ GDVG+GKTEVALRA F + A
Sbjct: 610 QEQFDNDFPYSETPDQLRSIEEIKHDM-ERVRPMDRLLVGDVGYGKTEVALRAAFKAIEA 668
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QHFD ++ RF YP I +G+LSRFQ+ E + + ++ G ++++
Sbjct: 669 GKQVAFLVPTTILAQQHFDTMTNRFEGYP-ITIGILSRFQTTKEVNQTIKGLEDGTVDVV 727
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL V + +LGLL+VDEEQRFGVK KE+I + VDVLTL+ATPIPRTL++++
Sbjct: 728 VGTHRLLSKDVKFKDLGLLLVDEEQRFGVKHKERIKEIRSDVDVLTLTATPIPRTLHMSM 787
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + I E+ RGGQVFY+ R+ +E+ +
Sbjct: 788 LGVRDLSVIETPPANRFPIQTYVMEQNAGALQDGIHREMQRGGQVFYLHNRVSDIEKTVS 847
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
++ P ++A HG+ QLE + F +G +L+ T I+E+G+D+ N NT+ V++
Sbjct: 848 QIKALVPDAEVAFIHGKMTEAQLEGVLYDFVRGEYDVLVTTTIIETGIDMPNVNTLFVEN 907
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GLAQLYQLRGR+GR+++ A+AY Y +L++ + +RL A+++ ELG GF++A
Sbjct: 908 ADHMGLAQLYQLRGRIGRSNRVAYAYFMYQQNKVLTEVSEKRLEAIKDFTELGSGFKIAM 967
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + ++G DL+ +ML ++++K +++ I
Sbjct: 968 RDLSIRGAGNLLGKQQHGFIDSIGYDLYSQMLADAVAKK--QGKAKKARSDATLELGIEA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LPS YI + +EM + + + + + + L ++G+ P + LLK +++
Sbjct: 1026 YLPSTYIEDEQQKIEMYKRIRQVTDDEEYY--EIEDDLIDRFGEYPMPVANLLKISHLKM 1083
Query: 559 MAADIGITKI 568
A + I KI
Sbjct: 1084 QADEALIEKI 1093
>gi|227501542|ref|ZP_03931591.1| possible transcription-repair coupling factor [Corynebacterium
accolens ATCC 49725]
gi|227077567|gb|EEI15530.1| possible transcription-repair coupling factor [Corynebacterium
accolens ATCC 49725]
Length = 1213
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 225/554 (40%), Positives = 333/554 (60%), Gaps = 16/554 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFP 87
LSK+ + W+ K K + A++++ +L++LY R Q P + P NP AE FP
Sbjct: 581 LSKMGGSD-WKNTKKKARAAVREIAGELVDLYAKR--QAAPGHQFAPDNPWQAEMEDNFP 637
Query: 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147
+ T DQ A V+ D+ E PMDR++ GDVG+GKTEVA+RA F V G Q VL P
Sbjct: 638 FVETEDQMLAIDAVKEDM-ESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGTQVAVLVP 696
Query: 148 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS 207
T +LA+QHFD SER + +P +K+ +LSRF SK E E + G ++I+VGTH LL +
Sbjct: 697 TTLLAQQHFDTFSERMAGFP-VKMAVLSRFTSKKEATEIFKGLADGSIDIVVGTHRLLQT 755
Query: 208 RVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI 267
V + NLGL+VVDEEQRFGV+ KE I + K SVDVLT+SATPIPRTL +++ G R+ S I
Sbjct: 756 GVHWKNLGLIVVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTI 815
Query: 268 STPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGV 327
TPP +R P+ T++ A+ ++V +AI+ EL R GQ F++ ++ +E+ L+ P
Sbjct: 816 LTPPEDRHPVLTYVGAYEDKQVAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPEA 875
Query: 328 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 387
I +AHGQ LE+T++ F +L+CT IVE+GLDI NANT+IV++ GL+QL
Sbjct: 876 RIVVAHGQMNEDVLEKTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 935
Query: 388 YQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFG 447
+QLRGRVGR+ + +AY YP + L++ + +RLA + + +LG G +A KD+ +RG G
Sbjct: 936 HQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 995
Query: 448 TIFGEQQTGDVGNVGVDLFFEML------FESLSKVDEHCVISVPYKSVQIDININPRLP 501
+ G QQ+G + VG DL+ ++ F+SL++ + V K ++ID+ ++ +P
Sbjct: 996 NVLGAQQSGHIAGVGFDLYVRLVGEAVEAFKSLARGEAPAVTDEGPKEIRIDLPVDAHIP 1055
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI+ +E+ + AA QD L E + ++G P +E LL +R A
Sbjct: 1056 ESYIDSERLRLEVYRKL--AASQDNKDLAAAREEMEDRFGPLPKEVERLLAVARLRHQAR 1113
Query: 562 DIGITKIYASGKMV 575
G+ I G V
Sbjct: 1114 RAGVADITVQGTRV 1127
>gi|148360394|ref|YP_001251601.1| transcription repair coupling factor [Legionella pneumophila str.
Corby]
gi|296106539|ref|YP_003618239.1| transcription-repair coupling factor [Legionella pneumophila 2300/99
Alcoy]
gi|148282167|gb|ABQ56255.1| transcription repair coupling factor [Legionella pneumophila str.
Corby]
gi|295648440|gb|ADG24287.1| transcription-repair coupling factor (superfamily II helicase)
[Legionella pneumophila 2300/99 Alcoy]
Length = 1153
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 232/573 (40%), Positives = 342/573 (59%), Gaps = 9/573 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA-IAEFAAQFPYEPTPDQKKAF 98
W++ K K I + ++L++LY R Q Y N + +FA+ FP+ TPDQ +A
Sbjct: 553 WQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFNQSEYIKFASGFPFTETPDQLQAI 612
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+ RD+ + PMDRLICGDVGFGKTEVA+RA F V GKQ +LAPT +LA QHF+
Sbjct: 613 EQIIRDM-QSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAPTTLLAGQHFES 671
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+RF+++P + + LLSRF+S E E L ++ G ++I++GTH L + + + NLGLL+
Sbjct: 672 FRDRFAEFP-VNIELLSRFRSNKESEAVLAALQSGKVDIVIGTHKLFQNNISFKNLGLLI 730
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEE RFGVKQKE I S + VD+L+++ATPIPRTL +A+ G RD SLI+TPP +RL IK
Sbjct: 731 IDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIRDISLIATPPAKRLAIK 790
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + AI E+ RGGQVFY+ ++ +E L+ P I AHGQ
Sbjct: 791 TFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIERVCQDLEALVPEAKIQSAHGQMRE 850
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
RQLE M F +L+CT I+E+G+DI ANTII+ +FGLAQL+QLRGRVGR+
Sbjct: 851 RQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLHQLRGRVGRSH 910
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+A+AYL P++ LL+ A++RL A+ +LG GF LA D+ IRG G + GE+Q+G++
Sbjct: 911 HQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGELLGEEQSGNM 970
Query: 459 GNVGVDLFFEMLFESLS--KVDEHCVISVP-YKSVQIDININPRLPSEYINHLENPMEMV 515
+G +LF EML +++ K + +S P ++ +ID+ I+ +P +YI + N + M
Sbjct: 971 HAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEIDLRISAIIPEDYIGDIHNRLIMY 1030
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 575
A + L + L ++G P ++ L ++ AA +GI KI AS +
Sbjct: 1031 KRIANA--KTTQQLRELQIELIDRFGLLPQPVKHLFLITELKLKAAQLGIQKISASAQQG 1088
Query: 576 GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 608
+ + + + S+ +VH EG Q
Sbjct: 1089 KLDFSEKPSIDPGTLISLI-QVHAKRYQMEGPQ 1120
>gi|325846766|ref|ZP_08169681.1| transcription-repair coupling factor [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325481524|gb|EGC84565.1| transcription-repair coupling factor [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 1163
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/585 (38%), Positives = 352/585 (60%), Gaps = 10/585 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAE 81
N+ +P+ +S L + W++ K + K A+ ++ DL+ELY R K + + K+ P E
Sbjct: 555 NKGDKPK-ISSLG-SNQWKKAKQRAKKAVDEIADDLVELYAKRSKARGHAFAKDTPWQKE 612
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F F YE T Q ++ +++ D+ E PMDRL+CGDVG+GKTEVALRA F V G Q
Sbjct: 613 FEDSFIYEETDSQLRSIDEIKDDM-EDIKPMDRLLCGDVGYGKTEVALRAAFKAVMDGYQ 671
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QHF + ERF +P I +LSRF SK ++E+++ +K G ++IIVGT
Sbjct: 672 VCFLVPTTILARQHFKTMQERFKDFP-IDCAMLSRFVSKKDQEKYIHNLKSGKIDIIVGT 730
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL + + LGLL++DEEQRFGV+ K+K+ K ++DVLTLSATPIPRTL ++LTG
Sbjct: 731 HRLLSKDIKFKKLGLLIIDEEQRFGVRHKDKLKKLKENIDVLTLSATPIPRTLQMSLTGI 790
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S + PP R P+ T++ + + AI+ ELDR GQV++V R+ +++ + L+
Sbjct: 791 RDMSTLDEPPERRQPVNTYVLEYDFSIIKRAIEKELDRDGQVYFVYNRVYNIDKIYNHLK 850
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P I IAHGQ ++ LE+ ME F G I IL+ T I+E+G+DIQN NTIIV D
Sbjct: 851 LLVPDAKIEIAHGQMSAKSLEKIMEDFVSGEIDILLATTIIETGMDIQNVNTIIVYDSDM 910
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQL+GR+GR+ + ++AY Y +L++ +RL ++++ + G G+++A +D+
Sbjct: 911 MGLSQLYQLKGRIGRSSRSSYAYFTYAKGKVLTEIGEKRLKSIKDFSDFGSGYKIAMRDL 970
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
+RG G I GE Q+G V +G DL+ + L +++ K + S+ + V IDI I+ +P
Sbjct: 971 ELRGAGNILGESQSGQVEAIGYDLYVKFLQQAIDKASGKDIDSIKFNDVYIDIKIDAFIP 1030
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI ++M + + + L+ E L +YG P ++ ++ ++ MA
Sbjct: 1031 ESYIEDSSQKIQMYKRISSIEDLEDYSLL--VEDLIDRYGDIPVMVDNIMYVSLIKSMAD 1088
Query: 562 DIGITKIY-ASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFE 605
+G +I +G++ + NK F+ + S +E ++ L F+
Sbjct: 1089 KLGFDQIREVNGEIRISFNDRNKFSFEEL--SQINEDYKGELAFD 1131
>gi|365960705|ref|YP_004942272.1| transcription-repair coupling factor [Flavobacterium columnare ATCC
49512]
gi|365737386|gb|AEW86479.1| transcription-repair coupling factor [Flavobacterium columnare ATCC
49512]
Length = 1117
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/563 (39%), Positives = 339/563 (60%), Gaps = 22/563 (3%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQF 86
P + KL + AW+ K K K ++ + +L++LY R K + P + E + F
Sbjct: 498 PPKIYKLG-SGAWKALKQKTKARVKHIAFNLIQLYAKRRLDKGYAFAPDSYLQHELESSF 556
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
YE TPDQ KA DV+ D+ E E PMDRL+CGDVGFGKTEVA+RA F V KQ +L
Sbjct: 557 IYEDTPDQLKATQDVKADM-ENERPMDRLVCGDVGFGKTEVAIRAAFKAVDNSKQVAILV 615
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA QHF R P + + L+RF++ +K E L ++ G L+II+GTH L+
Sbjct: 616 PTTILAYQHFRTFKSRLKDLP-VNISYLNRFRTAKQKSEILKDLESGKLDIIIGTHQLVN 674
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
V + +LGLL++DEEQ+FGV K+++ + +VD LTL+ATPIPRTL +L RD S+
Sbjct: 675 KNVKFKDLGLLIIDEEQKFGVNVKDRLKTIATNVDTLTLTATPIPRTLQFSLMAARDLSV 734
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPPP R PI+T + F++E + AI YE++RGGQ++++ R++ ++E +Q+ P
Sbjct: 735 INTPPPNRYPIETQVIGFNEEIIRDAISYEIERGGQIYFINNRLENIKEIAGMIQRLVPN 794
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+ I HGQ +QLEE M F +G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 795 AKVGIGHGQMEGKQLEEIMLSFMEGEFDVLVATTIIESGLDVPNANTIFINNANNFGLSD 854
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+Q+RGRVGR++K+A Y P S+++++A +R+ AL + ELG GF +A KD+ IRG
Sbjct: 855 LHQMRGRVGRSNKKAFCYFITPPYSVMTEEARKRIQALTQFSELGSGFNIAMKDLEIRGA 914
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKV----------DEHCVISVPY-KSVQIDIN 495
G + G +Q+G + +G + + +++ E++ ++ +E + + Y K +QID +
Sbjct: 915 GDLLGGEQSGFINEIGFETYQKIMQEAIEELKENEFKDLYPEESNIETKEYVKDLQIDTD 974
Query: 496 INPRLPSEYINHLENPMEMVNEAE--KAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553
P EYIN + + + NE K E+ L ++ + L ++GK P S LL
Sbjct: 975 FELLFPDEYINSVTERLSLYNELAIIKTEEK----LQEYQKQLEDRFGKLPKSGLALLDS 1030
Query: 554 LYVRRMAADIGITK-IYASGKMV 575
L ++ A +GI K + GK+V
Sbjct: 1031 LRLKWKATHLGIEKLVLKQGKLV 1053
>gi|397666634|ref|YP_006508171.1| transcription-repair coupling factor [Legionella pneumophila subsp.
pneumophila]
gi|395130045|emb|CCD08278.1| transcription-repair coupling factor [Legionella pneumophila subsp.
pneumophila]
Length = 1153
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 232/573 (40%), Positives = 342/573 (59%), Gaps = 9/573 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA-IAEFAAQFPYEPTPDQKKAF 98
W++ K K I + ++L++LY R Q Y N + +FA+ FP+ TPDQ +A
Sbjct: 553 WQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFNQSEYIKFASGFPFTETPDQLQAI 612
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+ RD+ + PMDRLICGDVGFGKTEVA+RA F V GKQ +LAPT +LA QHF+
Sbjct: 613 EQIIRDM-QSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAPTTLLAGQHFES 671
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+RF+++P + + LLSRF+S E E L ++ G ++I++GTH L + + + NLGLL+
Sbjct: 672 FRDRFAEFP-VNIELLSRFRSNKESEAVLAALQSGKVDIVIGTHKLFQNNISFKNLGLLI 730
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEE RFGVKQKE I S + VD+L+++ATPIPRTL +A+ G RD SLI+TPP +RL IK
Sbjct: 731 IDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIRDISLIATPPAKRLAIK 790
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + AI E+ RGGQVFY+ ++ +E L+ P I AHGQ
Sbjct: 791 TFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIERVCQDLEALVPEAKIQSAHGQMRE 850
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
RQLE M F +L+CT I+E+G+DI ANTII+ +FGLAQL+QLRGRVGR+
Sbjct: 851 RQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLHQLRGRVGRSH 910
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+A+AYL P++ LL+ A++RL A+ +LG GF LA D+ IRG G + GE+Q+G++
Sbjct: 911 HQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGELLGEEQSGNM 970
Query: 459 GNVGVDLFFEMLFESLS--KVDEHCVISVP-YKSVQIDININPRLPSEYINHLENPMEMV 515
+G +LF EML +++ K + +S P ++ +ID+ I+ +P +YI + N + M
Sbjct: 971 HAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEIDLRISAIIPEDYIGDIHNRLIMY 1030
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 575
A + L + L ++G P ++ L ++ AA +GI KI AS +
Sbjct: 1031 KRIANA--KTTQQLRELQIELIDRFGLLPQPVKHLFLITELKLKAAQLGIQKISASAQQG 1088
Query: 576 GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 608
+ + + + S+ +VH EG Q
Sbjct: 1089 KLDFSEKPSIDPGTLISLI-QVHAKRYQMEGPQ 1120
>gi|390457082|ref|ZP_10242610.1| transcription-repair-coupling factor TRCF; ATP-dependent helicase mfd
[Paenibacillus peoriae KCTC 3763]
Length = 1175
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/490 (43%), Positives = 318/490 (64%), Gaps = 13/490 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNPAI 79
+E K P+ + KL W R K+K + ++Q + DL++LY R Q P + +P
Sbjct: 547 SEEKEPK-IYKLG-GNEWTRVKSKVRSSVQDIADDLIKLYAER--QSAPGFAFEKDSPEQ 602
Query: 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 139
EF FPYE T DQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F G
Sbjct: 603 QEFEDMFPYEETRDQVRAIGEIKKDM-EQGRPMDRLLCGDVGYGKTEVAIRAAFKSAIEG 661
Query: 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 199
KQ VL PT +LA+QH++ ERFS YP + +LSRF+S+ E+ E ++ G ++I++
Sbjct: 662 KQVAVLVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRSRKEQNETTKGVRQGTVDIVI 720
Query: 200 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 259
GTH LL +V+ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++
Sbjct: 721 GTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML 780
Query: 260 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 319
G RD S+I TPP R P++T++ S+ V AI+ E+ RGGQV+Y+ R++G++E
Sbjct: 781 GVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIEREMARGGQVYYLYNRVQGIQEMAAE 840
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
+ P + + HGQ +LE+T+ F G +L+ T+I+E+G+DI N NT+IV D
Sbjct: 841 INALVPEAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA 900
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 439
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E ELG GF++A +
Sbjct: 901 DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR 960
Query: 440 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCV----ISVPYKSVQIDIN 495
D+ IRG G + G +Q G + +VG DL+ +ML E ++K + +S S ID++
Sbjct: 961 DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVSVLGEEDLSNRNWSTSIDLS 1020
Query: 496 INPRLPSEYI 505
++ LP +YI
Sbjct: 1021 VDAYLPGDYI 1030
>gi|405983259|ref|ZP_11041569.1| transcription-repair coupling factor [Slackia piriformis YIT 12062]
gi|404389267|gb|EJZ84344.1| transcription-repair coupling factor [Slackia piriformis YIT 12062]
Length = 1205
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/547 (39%), Positives = 337/547 (61%), Gaps = 13/547 (2%)
Query: 36 DTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQ 94
+T+ W R +K + A +++ DL+++Y R + Y P P E FPY+ TPDQ
Sbjct: 588 NTSDWSRALSKARKATKELAFDLVDVYTRRASVQGFRYAPDTPWQREMEEAFPYDETPDQ 647
Query: 95 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 154
A +V+ D+ + PMDRL+CGDVGFGKTEVALRA F KQ MVL PT +LA+Q
Sbjct: 648 LSAIAEVKADM-QSSKPMDRLVCGDVGFGKTEVALRAAFKATQDNKQVMVLCPTTILAQQ 706
Query: 155 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNL 214
H+ ERF + D+ V +LSRF+S AE++ L+ G + ++VGTH LL V ++L
Sbjct: 707 HYTTFKERFDPF-DVHVEVLSRFRSPAEQKLALEGFAKGTVQVLVGTHRLLSRDVNPHDL 765
Query: 215 GLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER 274
GL+++DEEQRFGV KE++ + + +DVLTLSATPIPRT+ ++L+G RD SLI TPP R
Sbjct: 766 GLVIIDEEQRFGVGHKEQMKNLREQIDVLTLSATPIPRTMQMSLSGVRDMSLILTPPDNR 825
Query: 275 LPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHG 334
P++ H+ + + V AI+ EL RGGQV+YV R++ ++E ++ + A + +AHG
Sbjct: 826 RPVEVHVGEWDVDVVSEAIRRELQRGGQVYYVSNRVRTIDEAVERVGAAAAEARVGVAHG 885
Query: 335 QQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRV 394
+ +LE ME F+ GAI +L+ T I+ESG+D + NT+I++D Q+ GLAQ+YQL+GRV
Sbjct: 886 KMTKEELERVMEDFSAGAIDVLVATTIIESGIDNPHTNTLIIEDSQRLGLAQMYQLKGRV 945
Query: 395 GRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQ 454
GR+ +A+AY +PD L+++A+ RL A+ E R+LG G ++A +D+ IRG G++ G +Q
Sbjct: 946 GRSSVQAYAYFMFPDNVSLTEEAMARLDAINEHRDLGSGMRVAMRDLEIRGAGSLLGAEQ 1005
Query: 455 TGDVGNVGVDLFFEMLFESLSKV-----DEHCVISVPYKSVQIDININPRLPSEYINHLE 509
+G++ VG DLF +ML ++++ E V+ + ++ + +P EY++ +
Sbjct: 1006 SGNMSGVGFDLFAQMLSQAVANAREGASGEDAVLPPALSDITVNFPEHTYIPEEYVSDAD 1065
Query: 510 NPMEMVNEAEKAAEQDIWCLM-QFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
E V K A D ++ + E +YG P + + K VR A + G+ +
Sbjct: 1066 ---ERVLLYRKLACADTPSVVEELREQTSERYGAMPQACTNMFAKSLVRAWANEHGVKLV 1122
Query: 569 -YASGKM 574
++GK+
Sbjct: 1123 GVSAGKL 1129
>gi|148270474|ref|YP_001244934.1| transcription-repair coupling factor [Thermotoga petrophila RKU-1]
gi|147736018|gb|ABQ47358.1| transcription-repair coupling factor [Thermotoga petrophila RKU-1]
Length = 893
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/548 (41%), Positives = 357/548 (65%), Gaps = 14/548 (2%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE-FAAQFPYEPTPDQKKAF 98
W++ K + I+K + +L+ELY+ R + + P +P + E FA FPY TPDQ+++
Sbjct: 321 WKQTLKKVREDIEKKIRELVELYMRRQEIQGLSLPGDPELEEKFAESFPYIETPDQQQSI 380
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+V DL E PMDRL+CGD G GKTEVALRA F V++GKQ VL PT VLA+QH++
Sbjct: 381 EEVLSDLAS-EKPMDRLLCGDAGVGKTEVALRAAFRAVASGKQVAVLVPTTVLARQHYEN 439
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
ER + +KV LL ++ EK+E ++ +K G ++II+GTHSLL R+ +++LGL++
Sbjct: 440 FKERMEPF-GVKVELLDSSRTPREKKEIIEKLKKGEIDIIIGTHSLLNERIEFSDLGLVI 498
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQ+FGV+QKE+ ++SV+VLTLSATPIPRTL++AL+G +D S+I++PPP R P+
Sbjct: 499 IDEEQKFGVEQKERFKKLRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVY 558
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
+++ +S + V A+ E++RGGQV YV R++ L E + L++ FP ++IA+AHG+
Sbjct: 559 VYVAEYSDDLVKGAVIREINRGGQVIYVHNRVEELPEVFEKLKRMFPELEIAVAHGKMSR 618
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
R +E + +F +G I +L+CT I+E+G+DI NANT+IV D ++GL+QLYQLRGRVGR+D
Sbjct: 619 RTMERIVHEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLSQLYQLRGRVGRSD 678
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A AY YP + S ALERL L+ G G Q+A KDM +RG G + G +Q G+V
Sbjct: 679 RRAFAYFLYPKGTPRS--ALERLKVLKSYTGFGSGLQIALKDMELRGVGDVLGLEQHGNV 736
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR---LPSEYINHLENPMEMV 515
+VG+ L+ E+L E++++ E + SV ++I P +P +Y+ +NP+E +
Sbjct: 737 VSVGLKLYNEILKETITRFKERRIEK--KHSVNVEIENPPGRFFIPEDYV---QNPVERL 791
Query: 516 NEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM 574
+ A+ D L + E +R ++G+ P +++L+ +R A+ +G+ KI M
Sbjct: 792 RLYRRLASSLDEEDLEEILEEMRDRFGEPPEEVKLLVDYFRLRIRASKLGVKKIRFDHSM 851
Query: 575 VGMKTNMN 582
V + N +
Sbjct: 852 VEIFPNRD 859
>gi|308066876|ref|YP_003868481.1| transcription-repair coupling factor [Paenibacillus polymyxa E681]
gi|305856155|gb|ADM67943.1| Transcription-repair coupling factor (TRCF) [Paenibacillus polymyxa
E681]
Length = 1175
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/490 (42%), Positives = 318/490 (64%), Gaps = 13/490 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNPAI 79
+E K P+ + KL W R K+K + ++Q + DL++LY R Q P + +P
Sbjct: 547 SEDKEPK-IYKLG-GNEWTRVKSKVRSSVQDIADDLIKLYAER--QSAPGFAFEKDSPEQ 602
Query: 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 139
EF FPY+ T DQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F G
Sbjct: 603 QEFEDMFPYDETRDQIRAIEEIKKDM-EQSRPMDRLLCGDVGYGKTEVAIRAAFKSAIEG 661
Query: 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 199
KQ VL PT +LA+QH++ ERFS YP + +LSRF+++ E+ E + ++ G ++I++
Sbjct: 662 KQVAVLVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRTRKEQNETIKGVRQGTVDIVI 720
Query: 200 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 259
GTH LL +V+ +LG+L+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++
Sbjct: 721 GTHRLLSQDLVFKDLGMLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML 780
Query: 260 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 319
G RD S+I TPP R P++T++ S+ V AI+ E+ RGGQV+Y+ R++G++E
Sbjct: 781 GVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIEREMARGGQVYYLYNRVQGIQEMAAE 840
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
+ PG + + HGQ +LE+T+ F G +L+ T+I+E+G+DI N NT+IV D
Sbjct: 841 INALVPGAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA 900
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 439
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E ELG GF++A +
Sbjct: 901 DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR 960
Query: 440 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCV----ISVPYKSVQIDIN 495
D+ IRG G + G +Q G + +VG DL+ +ML E ++K + S S ID+
Sbjct: 961 DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVSVLGEEDQSNRNWSTSIDLG 1020
Query: 496 INPRLPSEYI 505
++ LP +YI
Sbjct: 1021 VDAYLPGDYI 1030
>gi|302669664|ref|YP_003829624.1| transcription-repair coupling factor Mfd [Butyrivibrio
proteoclasticus B316]
gi|302394137|gb|ADL33042.1| transcription-repair coupling factor Mfd [Butyrivibrio
proteoclasticus B316]
Length = 1191
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 226/570 (39%), Positives = 348/570 (61%), Gaps = 15/570 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+ET L+KL + W K+K K A++++ DL+ELY R + K + P E
Sbjct: 569 SETTHKPKLNKLG-SVEWSHTKSKVKAAVEEVAQDLVELYAKRQEAKGHQFSPDTVWQQE 627
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY+ T DQ A D +RD+ E MDRL+CGDVGFGKTE+A+RA F V GKQ
Sbjct: 628 FEDAFPYQETDDQLTAIEDTKRDM-ESGIIMDRLVCGDVGFGKTEIAIRAAFKAVQDGKQ 686
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
VL PT +LA+QH++ SER +P ++V L+SRF++ AE+++ + +K G ++I++GT
Sbjct: 687 VAVLVPTTILAQQHYNTFSERMRDFP-VRVDLMSRFRTAAEQKKTIVDLKKGLVDIVIGT 745
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V Y +LGLL+VDEEQRFGV KEK+ + K ++DVLTLSATPIPRTL+++L G
Sbjct: 746 HRLLSKDVQYKDLGLLIVDEEQRFGVTHKEKLKTLKENIDVLTLSATPIPRTLHMSLVGI 805
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
R+ S++ P +R+PI+T++ ++ E + AI EL R GQV+YV R+ + + +Q
Sbjct: 806 REMSVLEEAPNDRMPIQTYVMEYNDELIREAIARELARNGQVYYVYNRVNTIADVAAQIQ 865
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P ++A AHGQ +LE M F G I +L+ T I+E+GLDI N NT+I+ D +
Sbjct: 866 KLVPEANVAFAHGQMKESELERIMYDFIDGTIDVLVSTTIIETGLDIPNVNTMIIHDSDK 925
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+A+L Y +L + A +RL+A+ E +LG GF++A +D+
Sbjct: 926 MGLSQLYQLRGRVGRSNRTAYAFLMYKKDKMLKEVAEKRLSAIREFTDLGSGFKIAMRDL 985
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL---SKVDEHCVISVPYKSVQIDININP 498
IRG G++ G +Q+G + VG DL+ +ML E++ D ++ + ID++++
Sbjct: 986 EIRGAGSLLGRKQSGHMQAVGYDLYCKMLGEAVRHKKSDDTDGDYTLDDINTSIDLDVSA 1045
Query: 499 RLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
+P YI + E +E+ + E E D + L ++G+ P + LL+
Sbjct: 1046 FIPDNYILNEEQKLEIYKRIASLENQGECD-----DMKDELIDRFGEVPETAINLLRISL 1100
Query: 556 VRRMAADIGITKIYASGKMVGMKTNMNKKV 585
+R A + I +I + +K + N K+
Sbjct: 1101 LRTRAHALYIPEIKGGNGKIEIKISPNAKI 1130
>gi|183221209|ref|YP_001839205.1| transcription-repair coupling factor [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189911300|ref|YP_001962855.1| transcription-repair coupling factor [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167775976|gb|ABZ94277.1| Transcription-repair coupling factor [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167779631|gb|ABZ97929.1| Transcription-repair coupling factor (TRCF; ATP-dependent helicase
Mfd) [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 1140
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/529 (41%), Positives = 340/529 (64%), Gaps = 9/529 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQKK 96
+W++ K + + ++ K+ +L+ LY +RLK +P + EF A F +E TPDQ
Sbjct: 548 NSWKKAKERVQESVDKLAEELVLLYSNRLKLNGFAFPPDTIWQEEFEAAFEFEETPDQIS 607
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A V+ DL E PMDRL+CGDVG+GKTEVA+RA F V+ AGKQ M+L PT +L+ QHF
Sbjct: 608 AIEAVKLDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVIMAGKQVMLLTPTTILSLQHF 666
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ +R+ YP IK+ +SRF+S AE E L G +++++GTH++L S+V NLGL
Sbjct: 667 NTFKQRYENYP-IKIAFVSRFRSPAEIREDLKNFTEGKIDMLIGTHAILSSKVKPKNLGL 725
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L++DEEQ+FGV KE I FK VDVLTL+ATPIPRTL++ALTG R+ S+IST P R
Sbjct: 726 LIIDEEQKFGVTHKESIKKFKNLVDVLTLTATPIPRTLHMALTGIRELSIISTAPKNRQS 785
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T++ + AI+ E++RGGQVFY+ R++ +EE +++ P V + I HGQ
Sbjct: 786 VETYVLEEDDTLIQEAIRKEIERGGQVFYLYNRVESIEEEASYVRSLVPEVSVGILHGQL 845
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
++EET+ +F + IL+ T I+ESG+D+ N NT+IV+ FGL+QLYQ+RGRVGR
Sbjct: 846 TEDEIEETLVEFYERKYDILVTTTIIESGIDMPNVNTLIVKKADMFGLSQLYQIRGRVGR 905
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+D++A+AY+FYP K L+++ A +RL + E +ELG GF++A +D+ IRG G + G++Q+G
Sbjct: 906 SDRKAYAYMFYPSKKLMTELAEKRLNTIFEYQELGSGFKVAMRDLEIRGAGNLLGKEQSG 965
Query: 457 DVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPSEYINHLENPMEMV 515
D+ VG DL+ +ML ES+S++ E + V +++ N LP +YI + +E
Sbjct: 966 DIMEVGFDLYVKMLEESISRIKGEEVRVEV---RTAVNLKTNFYLPDDYIPDTKQKIEFY 1022
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
E +A D + + + ++G+ P ++ +R +A+++G
Sbjct: 1023 KRFEGSANLD--EIEELALEMEDRFGELPQIANTFVELEKIRTLASNLG 1069
>gi|345304591|ref|YP_004826493.1| transcription-repair coupling factor [Rhodothermus marinus
SG0.5JP17-172]
gi|345113824|gb|AEN74656.1| transcription-repair coupling factor [Rhodothermus marinus
SG0.5JP17-172]
Length = 1112
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/568 (40%), Positives = 339/568 (59%), Gaps = 15/568 (2%)
Query: 9 CTCGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 68
+ ++ + + E +PR L+KL + WE+ K + K ++ + DL+ LY R
Sbjct: 476 VSVNALHKLHRYTGREGHQPR-LTKLG-SGQWEKVKARTKKRVKDIARDLIRLYAKRKAS 533
Query: 69 KRPPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 127
+ + P E A F YE TPDQ A V+RD+ E+ PMDRL+CGDVGFGKTE+
Sbjct: 534 RGFAFSPDTVWQREMEAAFEYEDTPDQAAAAEAVKRDM-EQPVPMDRLVCGDVGFGKTEI 592
Query: 128 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 187
A+RA F V GKQ VL PT +LA QH++ + R + YP +++ +LSRF+S A++ L
Sbjct: 593 AIRAAFKAVQDGKQVAVLVPTTILADQHYETFTRRLAPYP-VRIEVLSRFRSPAQQRAVL 651
Query: 188 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 247
+ G ++II+GTH LL V + +LGLL++DEEQRFGV KE++ ++ VD LTL+A
Sbjct: 652 RDLAAGKVDIIIGTHRLLSKDVQFKDLGLLIIDEEQRFGVAAKERLRQLRVEVDTLTLTA 711
Query: 248 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 307
TPIPRTL AL G RD S+ISTPPP R PI T + F + + AI+YE+ RGGQVF++
Sbjct: 712 TPIPRTLQFALMGARDLSIISTPPPNRQPIVTEIHTFDETLIRDAIRYEISRGGQVFFIH 771
Query: 308 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 367
R++ + E LQ P V IA+AHGQ R+LE M F +L+ TNI+ESGLD
Sbjct: 772 NRVQSIYEMAARLQAIVPDVRIAVAHGQMKPRELERVMHDFMARKYDVLVSTNIIESGLD 831
Query: 368 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 427
I NANTII+ +QFGLA L+QLRGRVGR+D++A YL P L+ +A +RL A+EE
Sbjct: 832 IPNANTIIINHAEQFGLADLHQLRGRVGRSDRKAFCYLLVPSIHGLTREARQRLQAIEEF 891
Query: 428 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV-- 485
ELG GF +A +D+ IRG G + G +Q+G + +G + + ++L E++ ++ E V
Sbjct: 892 SELGSGFSIAMRDLDIRGAGNLLGAEQSGFIEEIGFETYQQILDEAIRELREEEFADVLG 951
Query: 486 --PYK--SVQIDININPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQY 540
P K +D+ + +P Y+ + +E +N + +E D + F E L ++
Sbjct: 952 APPPKPPETSVDVEADAFIPDTYVT---SNVERLNLYRRLSEATDEAAIEAFREELADRF 1008
Query: 541 GKEPYSMEILLKKLYVRRMAADIGITKI 568
G P ++ LL ++ + + + K+
Sbjct: 1009 GPVPPEVDNLLWAARLKLLGQALRLPKV 1036
>gi|170289131|ref|YP_001739369.1| DEAD/DEAH box helicase domain-containing protein [Thermotoga sp.
RQ2]
gi|170176634|gb|ACB09686.1| DEAD/DEAH box helicase domain protein [Thermotoga sp. RQ2]
Length = 893
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/548 (41%), Positives = 356/548 (64%), Gaps = 14/548 (2%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE-FAAQFPYEPTPDQKKAF 98
W++ K + I+K + +L+ELY+ R + + P +P + E FA FPY TPDQ+++
Sbjct: 321 WKQTLKKVREDIEKKIRELVELYMKRQEAQGLSLPGDPELEEKFAESFPYIETPDQQQSI 380
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+V DL E PMDRL+CGD G GKTEVALRA F V +GKQ VL PT VLA+QH++
Sbjct: 381 EEVMSDLAS-EKPMDRLLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVLARQHYEN 439
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
ER + +KV LL ++ EK+E ++ +K G ++II+GTHSLL R+ +++LGL++
Sbjct: 440 FKERMETF-GVKVELLDSSRTAREKKEIIEKLKKGEIDIIIGTHSLLNERIEFSDLGLVI 498
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQ+FGV+QKE+ ++SV+VLTLSATPIPRTL++AL+G +D S+I++PPP R P+
Sbjct: 499 IDEEQKFGVEQKERFKKLRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVY 558
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
+++ +S + V A+ E++RGGQV YV R++ L E + L++ FP ++IA+AHG+
Sbjct: 559 VYVAEYSDDLVKGAVIREINRGGQVIYVHNRVEELPEVFEKLKRMFPELEIAVAHGKMSR 618
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
R +E + +F +G I +L+CT I+E+G+DI NANT+IV D ++GL+QLYQLRGRVGR+D
Sbjct: 619 RAMERIVHEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLSQLYQLRGRVGRSD 678
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A AY YP + S ALERL L+ G G Q+A KDM +RG G + G +Q G+V
Sbjct: 679 RRAFAYFLYPKGTPRS--ALERLKVLKSYTGFGSGLQIALKDMELRGVGDVLGLEQHGNV 736
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR---LPSEYINHLENPMEMV 515
+VG+ L+ E+L E++++ E + SV ++I P +P +Y+ +NP+E +
Sbjct: 737 VSVGLKLYNEILKETITRFKERRIEK--KHSVNVEIENPPGRFFIPEDYV---QNPVERL 791
Query: 516 NEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM 574
+ A+ D L + E +R ++G+ P +++L+ +R A+ +G+ KI M
Sbjct: 792 RLYRRLASSLDEEDLEEILEEMRDRFGEPPEEVKLLVDYFRLRIRASKLGVKKIRFDHSM 851
Query: 575 VGMKTNMN 582
V + N +
Sbjct: 852 VEIFPNRD 859
>gi|436842258|ref|YP_007326636.1| Transcription-repair coupling factor [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
gi|432171164|emb|CCO24535.1| Transcription-repair coupling factor [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
Length = 1149
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/533 (41%), Positives = 328/533 (61%), Gaps = 11/533 (2%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
+ W + + K + AI+K+ +L+E+Y +R K Y P + EF + F +E TPDQ+K
Sbjct: 557 SRWSKTREKARKAIEKIAGELVEMYAYRKIAKGYAYGPLDEMYWEFESTFGFEETPDQEK 616
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A DV RD+ E PMDRL+CGDVGFGKTEVALRA F V GKQ ++L PT VLA+QH+
Sbjct: 617 AIQDVFRDM-ESPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVVLLCPTTVLAEQHY 675
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+R + + VG+LSRF +K ++ L+ + G L+I++GTH +L V NLGL
Sbjct: 676 QTFMQRMEGFA-VTVGMLSRFVTKTRQKRVLEQLASGELDILIGTHRVLSKDVDAPNLGL 734
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L++DEEQRFGV+ KE+I + ++D LTL+ATPIPRTL L+L+G R S I TPP +R P
Sbjct: 735 LILDEEQRFGVRHKERIKEMRKNIDALTLTATPIPRTLQLSLSGVRSLSTIETPPVDRKP 794
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T L + + S +K EL+RGGQ+F+V R++GLE ++F+++ P + +AHGQ
Sbjct: 795 VETALVERDEAMLASVVKRELERGGQIFWVHNRVQGLERVVEFVKKLAPDAQVGMAHGQM 854
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+ LEET+ KF + IL+ T I+ESGLD NANT+IV Q FGL QLYQLRGRVGR
Sbjct: 855 SEKNLEETIHKFWHKELDILVATAIIESGLDFPNANTLIVDQAQMFGLGQLYQLRGRVGR 914
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ ++A+AY LS++A R+ + + LG GF++A +D+ +RG G I GE Q+G
Sbjct: 915 SKRQAYAYFVVSSLDSLSEKAKRRMQIILQLDYLGAGFKVAMEDLRLRGAGNILGEVQSG 974
Query: 457 DVGNVGVDLFFEMLFESLSKV--DEHCVISVPYKSVQIDININPRLPSEYINHLENPMEM 514
+ VG+DLF EML E + ++ D+ IS P +++ LP +++ +
Sbjct: 975 QMAKVGLDLFLEMLDEEVRRIKGDDSAKISDP----EMNFVFKAHLPEDFVPDARERLRY 1030
Query: 515 VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITK 567
A + + + ++ ++G P +E + LY++R A +G+ +
Sbjct: 1031 YRALSSADTEA--KIEELGAEIKDRFGHFPEEVENFISVLYLKRTLARLGVVR 1081
>gi|54296975|ref|YP_123344.1| transcription-repair coupling factor [Legionella pneumophila str.
Paris]
gi|53750760|emb|CAH12167.1| Transcription-repair coupling factor [Legionella pneumophila str.
Paris]
Length = 1153
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 232/573 (40%), Positives = 342/573 (59%), Gaps = 9/573 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA-IAEFAAQFPYEPTPDQKKAF 98
W++ K K I + ++L++LY R Q Y N + +FA+ FP+ TPDQ +A
Sbjct: 553 WQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFNQSEYIKFASGFPFTETPDQLQAI 612
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+ RD+ + PMDRLICGDVGFGKTEVA+RA F V GKQ +LAPT +LA QHF+
Sbjct: 613 EQIIRDM-QSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAPTTLLAGQHFES 671
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+RF+++P + + LLSRF+S E E L ++ G ++I++GTH L + + + NLGLL+
Sbjct: 672 FRDRFAEFP-VNIELLSRFRSNKESEAVLAALQSGKVDIVIGTHKLFQNNISFKNLGLLI 730
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEE RFGVKQKE I S + VD+L+++ATPIPRTL +A+ G RD SLI+TPP +RL IK
Sbjct: 731 IDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIRDISLIATPPAKRLAIK 790
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + AI E+ RGGQVFY+ ++ +E L+ P I AHGQ
Sbjct: 791 TFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIERVCQDLEALVPEAKIQSAHGQMRE 850
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
RQLE M F +L+CT I+E+G+DI ANTII+ +FGLAQL+QLRGRVGR+
Sbjct: 851 RQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLHQLRGRVGRSH 910
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+A+AYL P++ LL+ A++RL A+ +LG GF LA D+ IRG G + GE+Q+G++
Sbjct: 911 HQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGELLGEEQSGNM 970
Query: 459 GNVGVDLFFEMLFESLS--KVDEHCVISVP-YKSVQIDININPRLPSEYINHLENPMEMV 515
+G +LF EML +++ K + +S P ++ +ID+ I+ +P +YI + N + M
Sbjct: 971 HAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEIDLRISAIIPEDYIGDIHNRLIMY 1030
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 575
A + L + L ++G P ++ L ++ AA +GI KI AS +
Sbjct: 1031 KRIANA--KTTQQLRELQIELIDRFGLLPQPVKHLFLITELKLKAAQLGIQKISASAQQG 1088
Query: 576 GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 608
+ + + + S+ +VH EG Q
Sbjct: 1089 KLDFSEKPSIDPGTLISLI-QVHAKRYQMEGPQ 1120
>gi|292493142|ref|YP_003528581.1| transcription-repair coupling factor [Nitrosococcus halophilus Nc4]
gi|291581737|gb|ADE16194.1| transcription-repair coupling factor [Nitrosococcus halophilus Nc4]
Length = 1158
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/538 (39%), Positives = 331/538 (61%), Gaps = 8/538 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK-NPAIAEFAAQFPYEPTPDQKKAF 98
WER K K + ++ + +L+ +Y R +K+P P + A FA FP+E TPDQ A
Sbjct: 560 WERAKRKARERVRDVAAELLAIYAQRAARKKPALPPPDSHYAAFARDFPFEETPDQADAI 619
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
V DLT E PMDRL+CGDVGFGKTEVA+RA F AGKQ VL PT +LA+QH
Sbjct: 620 EAVIADLTS-EKPMDRLVCGDVGFGKTEVAMRAAFIASQAGKQVAVLVPTTLLAQQHHQS 678
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+RF+ +P ++V ++SRF+S+ E+E ++ I G ++I++GTH LL + + +LGL++
Sbjct: 679 FKDRFADWP-VRVEVMSRFRSRKEQETIVNGIADGRVDIVIGTHKLLQENIHFKDLGLVI 737
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEE RFGV+QKE++ + + VDVLTL+ATPIPRTL+++L+G RD S+I+TPP RL IK
Sbjct: 738 IDEEHRFGVRQKERMKALRAEVDVLTLTATPIPRTLHMSLSGLRDLSIIATPPARRLAIK 797
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + + A+ E+ RGGQ++++ ++ +E+ +Q FP + +AHGQ
Sbjct: 798 TFVRQWDDSLLREALLREIKRGGQIYFLHNEVESIEKMAHRVQTLFPEAKVGVAHGQMRE 857
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
R+LE+ M F +L+CT I+E+G+DI +ANTII+ +FGLAQLYQLRGRVGR+
Sbjct: 858 RELEQVMLNFYHRRFNVLVCTTIIETGIDIPSANTIIIHRADKFGLAQLYQLRGRVGRSH 917
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
A+AYL P +S+++ A++RL A+E ELG GF LA DM IRG G + G+ Q+G +
Sbjct: 918 HRAYAYLIVPPRSVMTADAVKRLEAIESLEELGAGFTLATHDMEIRGAGELLGKGQSGQM 977
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKS---VQIDININPRLPSEYINHLENPMEMV 515
+G L+ ++L +++ + + + + ++D++ +P +Y+ + + +
Sbjct: 978 QEIGFSLYNDLLERAVNSLKSGQTLDLEQPTEHGPEVDLHAPALIPEDYLPDVHTRLVLY 1037
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
A L + + ++G P + + L +R A++IGI KI AS +
Sbjct: 1038 KRIATAKSNQ--ELKELQVEMIDRFGLLPEATKTLFAIHELRLKASEIGIRKIEASTR 1093
>gi|266619807|ref|ZP_06112742.1| transcription-repair coupling factor [Clostridium hathewayi DSM
13479]
gi|288868593|gb|EFD00892.1| transcription-repair coupling factor [Clostridium hathewayi DSM
13479]
Length = 1178
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/582 (37%), Positives = 354/582 (60%), Gaps = 9/582 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E K+P+ L++L W + KT+ K A++++ DL++LY R + Y P EF
Sbjct: 566 EAKKPK-LNRLG-GDQWNKTKTRVKGAVREIAKDLVQLYAARQDTQGFQYGPDTVWQKEF 623
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPYE T DQ A + D+ R+ MDRLICGDVG+GKTE+ALRA F V KQ
Sbjct: 624 EEMFPYEETEDQLDAIDSTKSDMESRKI-MDRLICGDVGYGKTEIALRAAFKAVQDEKQV 682
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
+ L PT +LA+QH++ +R +P ++V L+SRF++ ++ ++ L+ +K G ++I++GTH
Sbjct: 683 VYLVPTTILAQQHYNTFVQRMKDFP-VRVDLMSRFRTPSQVKKTLEDLKRGLVDIVIGTH 741
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
+L V + +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL+++L G R
Sbjct: 742 RVLSKDVQFKDLGLLIIDEEQRFGVAHKEKIKKLKENIDVLTLTATPIPRTLHMSLVGIR 801
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S++ PP +R+PI+T++ ++ E V AI EL RGGQV+YV R+ ++E +
Sbjct: 802 DMSVLEEPPVDRMPIQTYVMEYNDEMVREAINRELSRGGQVYYVYNRVSNIDEVAGHIAS 861
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P + AHGQ + +LE M F G I +L+CT I+E+GLDI NANT+I+QD +
Sbjct: 862 LVPEATVTFAHGQMHEHELERIMFDFVNGEIDVLVCTTIIETGLDIPNANTMIIQDADRM 921
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR+ + ++A+L Y +L ++A +RL A+ E ELG G ++A +D+
Sbjct: 922 GLSQLYQLRGRVGRSSRTSYAFLMYKRDKMLREEAEKRLQAIREFTELGSGIKIAMRDLE 981
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G + G +Q G + VG DL+ ++L +++ ++ Y++V +D +I+ +P+
Sbjct: 982 IRGAGNVLGAEQHGHMEAVGYDLYCKLLNQAVLELKGQRREEDTYETV-VDCDIDAYIPT 1040
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
YI + +++ +D + MQ + L ++G P +E LL+ ++ +A
Sbjct: 1041 SYIKNEYQKLDIYKRISSIENEDEYMDMQ--DELMDRFGDIPKPVENLLRVAGIKALAHS 1098
Query: 563 IGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTF 604
+T++ + + + + K+ I +M + +R L F
Sbjct: 1099 AYVTEVNINSQEIRLTMYQKAKLSVAGIPAMVDQ-YRGDLKF 1139
>gi|417783574|ref|ZP_12431292.1| transcription-repair coupling factor [Leptospira interrogans str.
C10069]
gi|418708815|ref|ZP_13269615.1| transcription-repair coupling factor [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418724805|ref|ZP_13283589.1| transcription-repair coupling factor [Leptospira interrogans str. UI
12621]
gi|421124291|ref|ZP_15584551.1| transcription-repair coupling factor [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421136689|ref|ZP_15596787.1| transcription-repair coupling factor [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|409953198|gb|EKO07699.1| transcription-repair coupling factor [Leptospira interrogans str.
C10069]
gi|409961702|gb|EKO25445.1| transcription-repair coupling factor [Leptospira interrogans str. UI
12621]
gi|410019147|gb|EKO85974.1| transcription-repair coupling factor [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410438210|gb|EKP87306.1| transcription-repair coupling factor [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410770745|gb|EKR45958.1| transcription-repair coupling factor [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
Length = 1186
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/559 (41%), Positives = 358/559 (64%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 579 TESPR-LDSLGKST-WKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 636
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 637 AEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 695
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++VGTH+
Sbjct: 696 MLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHA 754
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 755 ILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRE 814
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++L +
Sbjct: 815 LSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNYLSKL 874
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 875 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 934
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 935 LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 994
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N +P
Sbjct: 995 RGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNFFIPE 1051
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G+ P + ILL+K +R +A
Sbjct: 1052 TYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--IRTLA 1107
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + MK+
Sbjct: 1108 SNLGFEFVTEMKDEIKMKS 1126
>gi|373859321|ref|ZP_09602051.1| transcription-repair coupling factor [Bacillus sp. 1NLA3E]
gi|372450990|gb|EHP24471.1| transcription-repair coupling factor [Bacillus sp. 1NLA3E]
Length = 1178
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/494 (42%), Positives = 324/494 (65%), Gaps = 8/494 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ + KL T W+R K K + ++Q + DL++LY R K + P +
Sbjct: 558 SEGKEPK-IYKLGGTD-WKRVKKKVESSVQDIADDLIKLYAEREAAKGHSFSPDGDMQRD 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY+ T DQ ++ ++++D+ E+E PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FEMAFPYQETEDQIRSINEIKKDM-EKERPMDRLLCGDVGYGKTEVAIRAGFKAIADGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF YP IK+GLLSRF+++ E+ E + +K G ++I+VGT
Sbjct: 675 VAFLVPTTILAQQHYETMRERFQDYP-IKIGLLSRFRTRKEQLETIKGLKAGTVDIVVGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL ++Y ++GLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDIIYRDIGLLIIDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL R GQV+++ R++ +E ++ +
Sbjct: 794 RDLSVIETPPENRFPVQTYVMEYNGGLVREAIERELARDGQVYFLYNRVEDIERKVEEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHGQ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDARVVCAHGQMSENELESVMLGFLEGEYDVLVSTTIIETGVDIPNVNTLIVFDADR 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL-SKVDEHCVISVPYKSVQIDININPRL 500
IRG G + G +Q G + +VG DL+ +ML E++ ++ + + P +++ID+ ++ +
Sbjct: 974 SIRGAGNLLGAEQHGFIDSVGFDLYSQMLKEAIEARKSDINLDEAP--TLEIDVEVDAYI 1031
Query: 501 PSEYINHLENPMEM 514
P YI +EM
Sbjct: 1032 PDAYIGDGHQKIEM 1045
>gi|421859825|ref|ZP_16292015.1| transcription-repair coupling factor [Paenibacillus popilliae ATCC
14706]
gi|410830586|dbj|GAC42452.1| transcription-repair coupling factor [Paenibacillus popilliae ATCC
14706]
Length = 1171
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/578 (38%), Positives = 350/578 (60%), Gaps = 11/578 (1%)
Query: 8 SCTCGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK 67
S + + +E K P+ + KL T W + K K + +++ + DL++LY R
Sbjct: 529 SVPVDQLHLIQRYVSSEEKEPK-IYKLGGTE-WTKVKNKVRSSVKDIADDLIKLYAARQA 586
Query: 68 QKRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTE 126
+ K+ + +F FPYE T DQ +A ++++D+ E PMDRL+CGDVG+GKTE
Sbjct: 587 SSGYAFDKDTSEQQDFEDLFPYEETRDQLRAIAEIKKDM-ELPRPMDRLLCGDVGYGKTE 645
Query: 127 VALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 186
VA+RA F GKQ +L PT +LA+QH++ ERF+ YP + ++SRF+S+ E+ E
Sbjct: 646 VAVRAAFKAAIEGKQVAILVPTTILAQQHYETFRERFADYP-FHIQVMSRFRSRKEQNET 704
Query: 187 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 246
+ +K G +++++GTH LL VV+ +GLL+VDEEQRFGV KEK+ K +VDVLTL+
Sbjct: 705 IKGLKTGSVDVVIGTHRLLSQDVVFKEIGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLT 764
Query: 247 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 306
ATPIPRTL++++ G RD S+I TPP R P++T++ +S V AI+ EL R GQV+++
Sbjct: 765 ATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEYSDSLVREAIERELARDGQVYFL 824
Query: 307 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 366
R++G+ + D ++ P +A++HGQ +LE+T+ F G +L+ T+I+E+G+
Sbjct: 825 FNRVQGIHQMADHIKMLVPEAKVAVSHGQMSETELEKTILDFLDGEYDVLVSTSIIETGV 884
Query: 367 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 426
DI N NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E
Sbjct: 885 DIPNVNTLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLNEVAEKRLQAIKE 944
Query: 427 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCV 482
ELG GF++A +D+ IRG G + G +Q G + +VG DL+ +ML + ++K +D +
Sbjct: 945 FTELGSGFKIAMRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLADEINKRKVELDGVAI 1004
Query: 483 ISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGK 542
S +D+NI+ LP YI +E+ + A + + + + L ++G+
Sbjct: 1005 HDQQELSTIVDLNIDAYLPPNYIYDSIQKIEIYKKV--AGLASLEEVEELRDELIDRFGE 1062
Query: 543 EPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTN 580
P ++ LL ++ A G+ I G V MK +
Sbjct: 1063 PPLAVLQLLAVARLKLHARQYGLESIVQRGDTVTMKVH 1100
>gi|433448301|ref|ZP_20411274.1| transcription-repair coupling factor [Weissella ceti NC36]
gi|429539932|gb|ELA07965.1| transcription-repair coupling factor [Weissella ceti NC36]
Length = 1169
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/594 (38%), Positives = 355/594 (59%), Gaps = 18/594 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ K K ++ + DL+ LY R L+Q P A F A FPY TPDQ ++
Sbjct: 569 WQKTKAKVAKKVEDIADDLLALYAERELRQGYAFSPDGDAQQRFEAAFPYAETPDQSRST 628
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++RD+ E++ PMDRL+ GDVGFGKTEVA+RA F V+ KQ +L PT +LA+QH++
Sbjct: 629 EEIKRDM-EKKRPMDRLLIGDVGFGKTEVAMRASFKAVNDHKQVAILVPTTILAQQHYES 687
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
RF D K+G+LSRFQS ++ E L+ + G L++++GTH LL V ++NLGLL+
Sbjct: 688 FVSRFEG-TDAKIGVLSRFQSTKQRRETLEALALGELDVVIGTHRLLSKDVTFDNLGLLI 746
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
VDEEQRFGVK KE++ + +VDVLTL+ATPIPRTL +++ G RD S+I TPP R PI+
Sbjct: 747 VDEEQRFGVKHKERLKELEANVDVLTLTATPIPRTLNMSMVGVRDLSVIETPPANRYPIQ 806
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ + + + S I+ EL RGGQVFY+ R+ +E+ +D++Q P + HGQ
Sbjct: 807 TYVIEQNGQTIASGIERELARGGQVFYLHNRVDDIEKTVDYIQTLAPDARVTYVHGQMTE 866
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
QLE + F G +L+ T I+E+G+DI NANT+ V++ GL+QLYQLRGRVGR++
Sbjct: 867 TQLEGVLVDFINGEYDVLVTTTIIETGVDIPNANTLFVENADHMGLSQLYQLRGRVGRSN 926
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
A+AY YP LS+++ +RL A+ + ELG GF++A +D+ IRG G + G+ Q G +
Sbjct: 927 NLAYAYFMYPGTRSLSEESEKRLEAIRDFTELGSGFKIAMRDLSIRGAGDLLGQSQHGFI 986
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEM---V 515
VG DL+ +ML E++ + V ++D+ LP EY++ +E+ +
Sbjct: 987 NTVGYDLYMQMLNEAVEA--KRGKKQVQKSDAELDLQCQAYLPQEYVSDGPQKIEIYQRI 1044
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK-M 574
+A +AAE + T+ L ++G+ P ++E L+ ++ A IT+I + M
Sbjct: 1045 RKATQAAE-----FAEITDDLFDRFGELPETVEALIAVGQLKANADYAMITQIKRPRQHM 1099
Query: 575 VGMKTNMNKKVFKM-MIDSMTSEVHRNSLTFEGDQIKAELLLEL-PREQLLNWI 626
+ ++KV M M+ H + Q+ EL++ + P++ L W+
Sbjct: 1100 QQIVVTFDEKVIDMNMVQMALKSAHMPGQVKQISQL--ELIIPIQPKQTELEWL 1151
>gi|15644199|ref|NP_229249.1| transcription-repair coupling factor [Thermotoga maritima MSB8]
gi|418045506|ref|ZP_12683601.1| transcription-repair coupling factor [Thermotoga maritima MSB8]
gi|4982014|gb|AAD36518.1|AE001796_10 transcription-repair coupling factor, putative [Thermotoga maritima
MSB8]
gi|351676391|gb|EHA59544.1| transcription-repair coupling factor [Thermotoga maritima MSB8]
Length = 893
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/548 (41%), Positives = 358/548 (65%), Gaps = 14/548 (2%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE-FAAQFPYEPTPDQKKAF 98
W++ K + I+K + +L+ELY+ R + + P +P + E FA FPY TPDQ+++
Sbjct: 321 WKQTLKKVREDIEKKIKELVELYMKRQEAQGLSLPGDPELEEKFAESFPYIETPDQQQSI 380
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+V DL E PMDRL+CGD G GKTEVALRA F V++GKQ VL PT VLA+QH++
Sbjct: 381 EEVLSDLAS-EKPMDRLLCGDAGVGKTEVALRAAFRAVASGKQVAVLVPTTVLARQHYEN 439
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
ER + +KV LL ++ EK+E ++ +K G ++II+GTHSLL R+ +++LGL++
Sbjct: 440 FKERMEPF-GVKVELLDSSRTAREKKEIIEKLKKGEIDIIIGTHSLLNERIEFSDLGLVI 498
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQ+FGV+QKE+ ++SV+VLTLSATPIPRTL++AL+G +D S+I++PPP R P+
Sbjct: 499 IDEEQKFGVEQKERFKKLRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVY 558
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
+++ +S + V A+ E++RGGQV YV R++ L E + L++ FP ++IA+AHG+
Sbjct: 559 VYVAEYSDDLVKGAVIREINRGGQVIYVHNRVEELPEVFEKLKRMFPELEIAVAHGKMSR 618
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+ +E + +F +G I +L+CT I+E+G+DI NANT+IV D Q++GL+QLYQLRGRVGR+D
Sbjct: 619 KTMERIVHEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAQRYGLSQLYQLRGRVGRSD 678
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A AY YP + S ALERL L+ G G Q+A KDM +RG G + G +Q G+V
Sbjct: 679 RRAFAYFLYPKGTPRS--ALERLKVLKSYTGFGSGLQIALKDMELRGVGDVLGLEQHGNV 736
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR---LPSEYINHLENPMEMV 515
+VG+ L+ E+L E++++ E + SV ++I P +P +Y+ +NP+E +
Sbjct: 737 VSVGLKLYNEILKETITRFKERRIEK--KHSVNVEIENPPGRFFIPEDYV---QNPVERL 791
Query: 516 NEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM 574
+ A+ D L + E ++ ++G+ P +++L+ +R A+ +GI KI M
Sbjct: 792 RLYRRLASSLDEEDLEEILEEMKDRFGEPPEEVKLLVDYFRLRVRASKLGIKKIRFDHSM 851
Query: 575 VGMKTNMN 582
V + + N
Sbjct: 852 VEIFPSRN 859
>gi|325568171|ref|ZP_08144612.1| transcription-repair coupling factor [Enterococcus casseliflavus ATCC
12755]
gi|420263436|ref|ZP_14766073.1| transcription-repair coupling factor [Enterococcus sp. C1]
gi|325158372|gb|EGC70523.1| transcription-repair coupling factor [Enterococcus casseliflavus ATCC
12755]
gi|394769393|gb|EJF49249.1| transcription-repair coupling factor [Enterococcus sp. C1]
Length = 1172
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/530 (40%), Positives = 334/530 (63%), Gaps = 8/530 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E+K P+ ++KL + W + K K I+ + DL+ LY R +K + P + E
Sbjct: 554 SESKTPK-INKLGGS-EWAKTKRKVTAKIEDIADDLILLYAKRESEKGYAFQPDDAYQKE 611
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVGFGKTEVALRA F + KQ
Sbjct: 612 FEDAFPYSETDDQLRSTAEIKRDM-EKEKPMDRLLVGDVGFGKTEVALRAAFKAIKESKQ 670
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + +RF +P + VG+LSRF++K ++ E ++ ++ G ++I+VGT
Sbjct: 671 VAFLVPTTILAQQHYETMVDRFEGFP-VNVGVLSRFRTKKQQNETIEQVRKGQVDILVGT 729
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V + +LGLLV+DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 730 HRLLSKDVEFADLGLLVIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGV 789
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + V AI+ E+ RGGQVFY+ R+ +E ++ LQ
Sbjct: 790 RDLSVIETPPENRYPIQTYVMEMNPGAVREAIQREMARGGQVFYLYNRVDTIERKVEELQ 849
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P IA AHGQ QLE T+ F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 ALVPDARIAYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 909
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 910 MGLSTLYQLRGRVGRSNRVAYAYFMYEQQKVLNEVSEKRLQAIKDFTELGSGFKIAMRDL 969
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++++ + +V+ID+ I+ LP
Sbjct: 970 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVTR-KQGKNTQTEKTTVEIDLGIDAYLP 1028
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
+ YI +E+ + Q+ + + + L ++G+ P + LL
Sbjct: 1029 TSYIEDERQKIEIYKRIRELESQE--AVDELQDDLLDRFGEYPVEVAHLL 1076
>gi|418703935|ref|ZP_13264817.1| transcription-repair coupling factor [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410766419|gb|EKR37104.1| transcription-repair coupling factor [Leptospira interrogans serovar
Hebdomadis str. R499]
Length = 1186
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/559 (41%), Positives = 358/559 (64%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 579 TESPR-LDSLGKST-WKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 636
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 637 AEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 695
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++VGTH+
Sbjct: 696 MLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHA 754
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 755 ILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRE 814
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++L +
Sbjct: 815 LSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNYLSKL 874
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 875 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 934
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 935 LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 994
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N +P
Sbjct: 995 RGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNFFIPE 1051
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G+ P + ILL+K +R +A
Sbjct: 1052 TYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--IRTLA 1107
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + MK+
Sbjct: 1108 SNLGFEFVTEMKDEIKMKS 1126
>gi|45657330|ref|YP_001416.1| transcription-repair coupling factor [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|421083962|ref|ZP_15544828.1| transcription-repair coupling factor [Leptospira santarosai str.
HAI1594]
gi|421102181|ref|ZP_15562789.1| transcription-repair coupling factor [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|45600568|gb|AAS70053.1| transcription-repair coupling factor [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|410368009|gb|EKP23389.1| transcription-repair coupling factor [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410433509|gb|EKP77854.1| transcription-repair coupling factor [Leptospira santarosai str.
HAI1594]
Length = 1186
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/559 (41%), Positives = 358/559 (64%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 579 TESPR-LDSLGKST-WKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 636
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 637 AEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 695
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++VGTH+
Sbjct: 696 MLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHA 754
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 755 ILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRE 814
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++L +
Sbjct: 815 LSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNYLSKL 874
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 875 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 934
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 935 LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 994
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N +P
Sbjct: 995 RGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNFFIPE 1051
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G+ P + ILL+K +R +A
Sbjct: 1052 TYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--IRTLA 1107
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + MK+
Sbjct: 1108 SNLGFEFVTEMKDEIKMKS 1126
>gi|418700047|ref|ZP_13260992.1| transcription-repair coupling factor [Leptospira interrogans serovar
Bataviae str. L1111]
gi|410760919|gb|EKR27112.1| transcription-repair coupling factor [Leptospira interrogans serovar
Bataviae str. L1111]
Length = 1180
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/559 (41%), Positives = 358/559 (64%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 573 TESPR-LDSLGKST-WKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 630
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 631 AEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 689
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++VGTH+
Sbjct: 690 MLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHA 748
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 749 ILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRE 808
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++L +
Sbjct: 809 LSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNYLSKL 868
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 869 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 928
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 929 LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 988
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N +P
Sbjct: 989 RGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNFFIPE 1045
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G+ P + ILL+K +R +A
Sbjct: 1046 TYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--IRTLA 1101
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + MK+
Sbjct: 1102 SNLGFEFVTEMKDEIKMKS 1120
>gi|374261523|ref|ZP_09620104.1| transcription repair coupling factor [Legionella drancourtii LLAP12]
gi|363538006|gb|EHL31419.1| transcription repair coupling factor [Legionella drancourtii LLAP12]
Length = 1149
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 234/589 (39%), Positives = 344/589 (58%), Gaps = 10/589 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA-IAEFAAQFPYEPTPDQKKAF 98
W+R K K I + ++L++LY R Q Y N + +FA+ FP+ T DQ ++
Sbjct: 553 WQREKKKAAEKIHDVAIELLDLYAKREAQPGHQYELNHSEYIKFASAFPFTETVDQLQSI 612
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+ D+ + PMDRLICGDVGFGKTEVA+RA F V KQ +L PT +LA QHF+
Sbjct: 613 NQIITDM-QSSRPMDRLICGDVGFGKTEVAMRAAFVAVQNNKQVCILVPTTLLAGQHFES 671
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+RF+ + + + LLSRF+S E E L +K G +I++GTH L S + + NLGLL+
Sbjct: 672 FRDRFADFA-VNIELLSRFRSAKETEGVLASLKSGKTDIVIGTHKLFQSNIAFKNLGLLI 730
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEE RFGVKQKE I + + VD+L+++ATPIPRTL +A+ G RD SL++TPP +RL IK
Sbjct: 731 IDEEHRFGVKQKEHIKALRTHVDILSMTATPIPRTLNMAMAGIRDISLMTTPPAKRLAIK 790
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T V AI E+ RGGQVF++ ++ +E LQ P + AHGQ
Sbjct: 791 TFWQEKKDSVVREAILREILRGGQVFFLHNNVETIERICQDLQTLVPEAKVRSAHGQMRE 850
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
R+LE M +F +L+CT I+E+G+DI ANTII+ +FGLAQL+QLRGRVGR+
Sbjct: 851 RELERVMSEFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLHQLRGRVGRSH 910
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+A+AYL PD+ LL+ A++RL A+ +LG GF LA D+ IRG G + GE Q+G++
Sbjct: 911 HQAYAYLLTPDEKLLTSDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGELLGEDQSGNM 970
Query: 459 GNVGVDLFFEMLFESLSKVDEHCV--ISVP-YKSVQIDININPRLPSEYINHLENPMEMV 515
+G +LF EML ++S + + +S P Y+ +ID+ I+ +P EYI + N + M
Sbjct: 971 HAIGFNLFMEMLDRAVSDLKAGKIPELSAPMYQGPEIDLRISAIIPEEYIADIHNRLIMY 1030
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 575
A +D L + L ++G P ++ LL ++ A D+GI KI A +
Sbjct: 1031 KRISNA--KDKQQLHELQIELIDRFGLLPQPVKHLLLITELKLKAQDMGIQKISAGAQQG 1088
Query: 576 GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ-IKAELLLELPREQLL 623
++ + + + S+ +VH EG Q ++ L E P E++
Sbjct: 1089 KLEFSEQPSIDPGALISLI-QVHAKRYQMEGPQRLRFTLDSETPEERIF 1136
>gi|418692226|ref|ZP_13253305.1| transcription-repair coupling factor [Leptospira interrogans str.
FPW2026]
gi|400358016|gb|EJP14135.1| transcription-repair coupling factor [Leptospira interrogans str.
FPW2026]
Length = 1186
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/559 (41%), Positives = 358/559 (64%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 579 TESPR-LDSLGKST-WKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 636
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 637 AEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 695
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++VGTH+
Sbjct: 696 MLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHA 754
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 755 ILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRE 814
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++L +
Sbjct: 815 LSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNYLSKL 874
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 875 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 934
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 935 LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 994
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N +P
Sbjct: 995 RGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNFFIPE 1051
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G+ P + ILL+K +R +A
Sbjct: 1052 TYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--IRTLA 1107
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + MK+
Sbjct: 1108 SNLGFEFVTEMKDEIKMKS 1126
>gi|392397439|ref|YP_006434040.1| transcription-repair coupling factor Mfd [Flexibacter litoralis DSM
6794]
gi|390528517|gb|AFM04247.1| transcription-repair coupling factor Mfd [Flexibacter litoralis DSM
6794]
Length = 1147
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 227/552 (41%), Positives = 341/552 (61%), Gaps = 20/552 (3%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPY 88
+LSKL + W RK K K ++ + +L+ LY R +PK+ + AE + F Y
Sbjct: 534 SLSKLG-SQDWTNRKKKVKKHLKDIGTELIALYAKRQTATGFAFPKDNYMQAEVESSFFY 592
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
+ TPDQ A DV+ D+ E+ PMDRLICGDVGFGKTE+A+RA F VS GKQ VL PT
Sbjct: 593 QDTPDQATATNDVKNDM-EKPVPMDRLICGDVGFGKTEIAVRAAFKAVSNGKQVAVLVPT 651
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
VLA QH SER + + V ++RF++ E E L ++ G ++I+VGTH ++ ++
Sbjct: 652 TVLAAQHNRTFSERLGNF-GVNVDFINRFRTAKEVREILQKLEEGKIDILVGTHKIVSAK 710
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
+ +LGL ++DEEQ+FGVK K+KI +++VD LTL+ATPIPRTL +L G RD S++
Sbjct: 711 TKFKDLGLFIIDEEQKFGVKTKDKIKELRVNVDCLTLTATPIPRTLQFSLLGARDLSVMH 770
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
TPPP R P+ T + +F++ V AI EL RGGQVF+V R+ + E L + P
Sbjct: 771 TPPPNRQPVTTEVHSFNEALVRDAISLELRRGGQVFFVHNRVIDIYEVAGILTRLVPDAK 830
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+ + HGQ + QLE+TM F G IL+ TNI+ESGLDI NANTII+ + GL+ L+
Sbjct: 831 VVVGHGQMKNDQLEKTMMTFINGDADILVSTNIIESGLDIPNANTIIINNSHLIGLSDLH 890
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
Q+RGRVGR++K+A YL P ++ L + +RL ALEE ELG GF++A +D+ IRG G
Sbjct: 891 QMRGRVGRSNKKAFCYLLIPSQASLPADSRKRLKALEEFNELGDGFKIAMRDLDIRGAGN 950
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV---------PYK---SVQIDINI 496
+ G +Q+G + ++G+D + +ML E++S++ E + P K S++ D+ I
Sbjct: 951 LLGAEQSGFINDLGLDTYHKMLEEAISELKEDEFKELFQNPNAKPQPLKITCSIETDLEI 1010
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
+P YI+++ +++ EA+K ++ L +F E+++ ++G P + LL+ + +
Sbjct: 1011 --LIPESYISNISERLQLYIEADKLKNEE--QLEKFKETVKDRFGTPPADFDNLLQAVRL 1066
Query: 557 RRMAADIGITKI 568
R MA IG K+
Sbjct: 1067 RWMAEQIGFEKL 1078
>gi|302388692|ref|YP_003824513.1| transcription-repair coupling factor [Thermosediminibacter oceani DSM
16646]
gi|302199320|gb|ADL06890.1| transcription-repair coupling factor [Thermosediminibacter oceani DSM
16646]
Length = 1177
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 214/452 (47%), Positives = 300/452 (66%), Gaps = 4/452 (0%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQ 85
RP L+KL ++ W + KT+ K ++++M +L+ELY R K + P EF
Sbjct: 566 RPPKLNKLG-SSEWAKAKTRVKESVKEMAKELLELYAARQAMKGFAFSPDTVWQKEFEDL 624
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
FPYE TPDQ A +V+RD+ E + MDRL+CGDVG+GKTEVALRA F V KQ VL
Sbjct: 625 FPYEETPDQLTAIEEVKRDM-ESDKCMDRLLCGDVGYGKTEVALRAAFKAVMDAKQVAVL 683
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA+QH+ SERF+ +P ++V ++SRF+SKAE++ + +K+G ++II+GTH LL
Sbjct: 684 VPTTILAEQHYRTFSERFAPFP-VRVEVISRFKSKAEQKAIIKDLKNGAIDIIIGTHRLL 742
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
V + +LGLL++DEEQRFGV KEKI K +VDVLT++ATPIPRTL++A+TG RD S
Sbjct: 743 QKDVKFKDLGLLIIDEEQRFGVSHKEKIKQLKKNVDVLTMTATPIPRTLHMAMTGIRDMS 802
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
++ TPP R PI+T++ +S + AI EL RGGQV+YV R+ + E L P
Sbjct: 803 VMETPPENRYPIQTYVVEYSDSLIRDAIMRELSRGGQVYYVYNRVNTIYEEAKRLSALVP 862
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
IA+AHGQ + +LEE M F + +L+CT I+E+GLDI N NT+IV +FGL+
Sbjct: 863 EARIAVAHGQMHENELEEVMMDFYEHRYDVLVCTTIIETGLDIPNVNTLIVISADRFGLS 922
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
QLYQLRGRVGR+ +A AY Y LS+ A +RLAA+ + E G GF++A +D+ IRG
Sbjct: 923 QLYQLRGRVGRSSTQAFAYFTYKKDKTLSEAAEKRLAAIRDFTEFGAGFKIALRDLEIRG 982
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV 477
G I G +Q G + VG DL+ ++L E++ ++
Sbjct: 983 AGNILGTEQHGHMMTVGYDLYCKLLAEAVREL 1014
>gi|417762560|ref|ZP_12410549.1| transcription-repair coupling factor [Leptospira interrogans str.
2002000624]
gi|417775093|ref|ZP_12422953.1| transcription-repair coupling factor [Leptospira interrogans str.
2002000621]
gi|418671528|ref|ZP_13232879.1| transcription-repair coupling factor [Leptospira interrogans str.
2002000623]
gi|409941553|gb|EKN87181.1| transcription-repair coupling factor [Leptospira interrogans str.
2002000624]
gi|410575190|gb|EKQ38212.1| transcription-repair coupling factor [Leptospira interrogans str.
2002000621]
gi|410581487|gb|EKQ49297.1| transcription-repair coupling factor [Leptospira interrogans str.
2002000623]
Length = 1186
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/559 (41%), Positives = 358/559 (64%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 579 TESPR-LDSLGKST-WKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 636
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 637 AEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 695
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++VGTH+
Sbjct: 696 MLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHA 754
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 755 ILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRE 814
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++L +
Sbjct: 815 LSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNYLSKL 874
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 875 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 934
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 935 LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 994
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N +P
Sbjct: 995 RGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNFFIPE 1051
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G+ P + ILL+K +R +A
Sbjct: 1052 TYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--IRTLA 1107
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + MK+
Sbjct: 1108 SNLGFEFVTEMKDEIKMKS 1126
>gi|282882197|ref|ZP_06290836.1| transcription-repair coupling factor [Peptoniphilus lacrimalis 315-B]
gi|281297962|gb|EFA90419.1| transcription-repair coupling factor [Peptoniphilus lacrimalis 315-B]
Length = 1157
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/494 (41%), Positives = 323/494 (65%), Gaps = 7/494 (1%)
Query: 13 SIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 72
S+ Y + +E K P+ L+KL ++ W + K K K +I M DL++LY R +
Sbjct: 542 SLDLIYKYTGDEKKAPK-LNKL-NSIEWNKTKRKAKKSIDDMADDLIKLYAARESKNGFK 599
Query: 73 YPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 131
+ K+ + EF F YE T Q + ++++D+ E PMDRL+C DVG+GKTEVALRA
Sbjct: 600 FSKDSSFQREFEDAFIYEETDGQLLSSEEIKKDMEEAH-PMDRLLCADVGYGKTEVALRA 658
Query: 132 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 191
F + GKQ L PT +LA+QH++++ ERF +P ++VG+LSRF++K E++E ++ +K
Sbjct: 659 AFKAILDGKQVAFLVPTTILAQQHYNIMVERFKDFP-VEVGILSRFRTKKEQKETIEKLK 717
Query: 192 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 251
G ++I+VGTH LL VV+ +LGLL++DEEQRFGV+ KEK+ K ++D LTLSATPIP
Sbjct: 718 AGIVDIVVGTHRLLSKDVVFKDLGLLIIDEEQRFGVRHKEKLKMLKENIDTLTLSATPIP 777
Query: 252 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 311
RTL +++ G RD S+I PP ER P+KT++ ++ V AI E++RGGQV++V R+
Sbjct: 778 RTLQMSMIGIRDMSVIEEPPEERFPVKTYVLEYNPLMVREAILREVERGGQVYFVYNRVA 837
Query: 312 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 371
+E + L++ P V +A+GQ + LE+TM F +G + +L+C+ I+E+G+D+QNA
Sbjct: 838 NMEYKLQELRELVPEVSFVMANGQMNEKDLEDTMLSFLRGDVDVLLCSTIIETGMDVQNA 897
Query: 372 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 431
NT+I+ D + GL+QLYQLRGR+GR+ + A+AY Y +S+ A +RL ++E E G
Sbjct: 898 NTMIITDSNRLGLSQLYQLRGRIGRSSRVAYAYFTYEKDVSISEIAQKRLKTIKEFTEFG 957
Query: 432 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 491
GF++A +D+ IRG G+I G +Q G + N+G DL+ + L ++++K+ + +
Sbjct: 958 SGFKIALRDLEIRGSGSILGSKQHGHIDNIGYDLYMKYLTQAVNKL--KGIETRETIETV 1015
Query: 492 IDININPRLPSEYI 505
ID+ I+ +P YI
Sbjct: 1016 IDLKIDSYIPKTYI 1029
>gi|379710849|ref|YP_005266054.1| putative transcription-repair coupling factor [Nocardia
cyriacigeorgica GUH-2]
gi|374848348|emb|CCF65420.1| putative transcription-repair coupling factor [Nocardia
cyriacigeorgica GUH-2]
Length = 1459
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 223/553 (40%), Positives = 333/553 (60%), Gaps = 14/553 (2%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQF 86
+LSKL + W K K + A++++ +L++LY R Q P + P P E F
Sbjct: 831 SLSKLGGSD-WANTKRKARKAVREIAGELVQLYAAR--QAAPGHAFGPDTPWQQEMEDAF 887
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
+ T DQ A DV+ D+ E+ PMDR++CGDVG+GKTE+A+RA F V GKQ +VL
Sbjct: 888 AFTETVDQMTAITDVKADM-EKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVVVLV 946
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA+QH +ER + +P + V LSRF AE E L+ + G ++I+VGTH LL
Sbjct: 947 PTTLLAQQHLQTFTERVAGFP-VTVKGLSRFTDPAESREVLEGMASGEVDIVVGTHRLLQ 1005
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
+ V + +LGL++VDEEQRFGV+ KE I + + VDVLT+SATPIPRTL ++L G R+ S
Sbjct: 1006 TGVRWKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMST 1065
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I TPP ER P+ T++ A+S ++V +AI+ EL R GQVFYV R+ +++ ++ P
Sbjct: 1066 ILTPPEERHPVLTYVGAYSDKQVTAAIRRELLRDGQVFYVHNRVSSIDKAAKRIRDLVPE 1125
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
+ +AHGQ LE T++ F Q +L+CT I+E+GLDI NANT+IV+ GL+Q
Sbjct: 1126 ARVVVAHGQMNEDTLESTVQGFWQREFDVLVCTTIIETGLDISNANTLIVERADTLGLSQ 1185
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+QLRGRVGR+ + +AY YP + L++ A +RLA + + +LG G +A KD+ IRG
Sbjct: 1186 LHQLRGRVGRSRERGYAYFLYPPEKPLTETAYDRLATIAQNSDLGAGMAVAMKDLEIRGA 1245
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDININPRLPS 502
G + G +Q+G V VG DL+ ++ E++ + D + + K V+ID+ ++ +P
Sbjct: 1246 GNVLGAEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGKPITTEETKEVRIDLPVDAHIPP 1305
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
+YI +E + AA D L E L +YG P + L+ +R +A +
Sbjct: 1306 DYITSDRLRLEAYRKL--AAAHDDSTLAAVVEELVDRYGPLPVEVGRLVSVAKLRLLARE 1363
Query: 563 IGITKIYASGKMV 575
G+T+I +G V
Sbjct: 1364 YGVTEIAVTGTTV 1376
>gi|418730502|ref|ZP_13288996.1| transcription-repair coupling factor [Leptospira interrogans str. UI
12758]
gi|421116161|ref|ZP_15576549.1| transcription-repair coupling factor [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410012165|gb|EKO70268.1| transcription-repair coupling factor [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410774711|gb|EKR54715.1| transcription-repair coupling factor [Leptospira interrogans str. UI
12758]
gi|455670415|gb|EMF35397.1| transcription-repair coupling factor [Leptospira interrogans serovar
Pomona str. Fox 32256]
Length = 1186
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/559 (41%), Positives = 358/559 (64%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 579 TESPR-LDSLGKST-WKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 636
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 637 AEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 695
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++VGTH+
Sbjct: 696 MLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHA 754
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 755 ILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRE 814
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++L +
Sbjct: 815 LSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNYLSKL 874
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 875 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 934
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 935 LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 994
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N +P
Sbjct: 995 RGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNFFIPE 1051
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G+ P + ILL+K +R +A
Sbjct: 1052 TYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--IRTLA 1107
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + MK+
Sbjct: 1108 SNLGFEFVTEMKDEIKMKS 1126
>gi|296123961|ref|YP_003631739.1| transcription-repair coupling factor [Planctomyces limnophilus DSM
3776]
gi|296016301|gb|ADG69540.1| transcription-repair coupling factor [Planctomyces limnophilus DSM
3776]
Length = 1103
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 218/559 (38%), Positives = 341/559 (61%), Gaps = 8/559 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA-IAEFAAQFPYE 89
LSKL T AW ++K + A+ M D++ L R Q +P + + EF A FPY
Sbjct: 494 LSKLGGT-AWAQKKKRVAEAVTDMAADMLRLQAERELQPGIAFPPDSHWMEEFEASFPYI 552
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
T DQ KA LD++RD+ ER PM+RLICGDVGFGKTEVA+RA F V GKQ VL PT
Sbjct: 553 ETIDQSKAILDIKRDM-ERPRPMERLICGDVGFGKTEVAMRAAFKAVDGGKQVAVLVPTT 611
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
VLA+QH+ S RF+++P I +G LSRF++K E++ L + G +++++GTH L+ S V
Sbjct: 612 VLAEQHYRSFSSRFAEFP-INIGQLSRFRTKTEQKLTLSGLMDGSVDLVIGTHRLVQSDV 670
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL++DEEQRFGV+ KE++ + D+LTLSATPIPRTL+L+L G RD S + T
Sbjct: 671 HFKDLGLLIIDEEQRFGVEAKERLKKLRTQTDILTLSATPIPRTLHLSLIGVRDISNLET 730
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP +R+ I+T + F + AI EL+RGGQ+++V R+ ++ + ++ P +
Sbjct: 731 PPQDRMAIETRICRFDPTLIRQAIVRELNRGGQIYFVHNRVYNIQTMAERIRSIVPEAQV 790
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+ HGQ ++EE M F +G + +L+ T I+ESGLDI NANTI + + +GLA+++Q
Sbjct: 791 GVVHGQMNEHEMEEAMLGFVRGDLDVLVATTIIESGLDIPNANTIFINQAEHYGLAEMHQ 850
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR A+ YL + +LS QA +RL A+EE ELG GF+++ +D+ IRG G I
Sbjct: 851 LRGRVGRYKHRAYCYLMVEEGKILSPQATKRLKAIEEFSELGAGFKISMRDLEIRGAGNI 910
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G +Q+G + VG +L+ ++L ++ + + ++ V +D+ I+ +PSEY+
Sbjct: 911 LGTEQSGHIAIVGYELYCQLLENAVRALKREPLKE--HRHVDVDLPISAFIPSEYVPPGR 968
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
+EM + + + L Q+ ++ ++G P + ++ ++ +A+ I +I+
Sbjct: 969 LKIEMYRKLSQVVSME--ELRQYETEIKDRFGPVPKPAQRMIDLREIQLLASRWSIDRIH 1026
Query: 570 ASGKMVGMKTNMNKKVFKM 588
G + +K+ K+
Sbjct: 1027 LEGGYCVFSYRLPRKIEKL 1045
>gi|24215213|ref|NP_712694.1| transcription-repair coupling factor [Leptospira interrogans serovar
Lai str. 56601]
gi|386074517|ref|YP_005988834.1| transcription-repair coupling factor [Leptospira interrogans serovar
Lai str. IPAV]
gi|418670253|ref|ZP_13231625.1| transcription-repair coupling factor [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|24196293|gb|AAN49712.1|AE011418_8 transcription-repair coupling factor [Leptospira interrogans serovar
Lai str. 56601]
gi|353458306|gb|AER02851.1| transcription-repair coupling factor [Leptospira interrogans serovar
Lai str. IPAV]
gi|410754024|gb|EKR15681.1| transcription-repair coupling factor [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
Length = 1186
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/559 (41%), Positives = 358/559 (64%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 579 TESPR-LDSLGKST-WKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 636
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 637 AEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 695
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++VGTH+
Sbjct: 696 MLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHA 754
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 755 ILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRE 814
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++L +
Sbjct: 815 LSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNYLSKL 874
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 875 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 934
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 935 LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 994
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N +P
Sbjct: 995 RGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNFFIPE 1051
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G+ P + ILL+K +R +A
Sbjct: 1052 TYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--IRTLA 1107
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + MK+
Sbjct: 1108 SNLGFEFVTEMKDEIKMKS 1126
>gi|257877903|ref|ZP_05657556.1| transcription-repair coupling factor [Enterococcus casseliflavus
EC20]
gi|257812069|gb|EEV40889.1| transcription-repair coupling factor [Enterococcus casseliflavus
EC20]
Length = 1172
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/530 (40%), Positives = 334/530 (63%), Gaps = 8/530 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E+K P+ ++KL + W + K K I+ + DL+ LY R +K + P + E
Sbjct: 554 SESKTPK-INKLGGS-EWAKTKRKVTAKIEDIADDLILLYAKRESEKGYAFQPDDAYQKE 611
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVGFGKTEVALRA F + KQ
Sbjct: 612 FEDAFPYSETDDQLRSTAEIKRDM-EKEKPMDRLLVGDVGFGKTEVALRAAFKAIKESKQ 670
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + +RF +P + VG+LSRF++K ++ E ++ ++ G ++I+VGT
Sbjct: 671 VAFLVPTTILAQQHYETMVDRFEGFP-VNVGVLSRFRTKKQQNETIEQVRKGQVDILVGT 729
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V + +LGLLV+DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 730 HRLLSKDVEFADLGLLVIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGV 789
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + V AI+ E+ RGGQVFY+ R+ +E ++ LQ
Sbjct: 790 RDLSVIETPPENRYPIQTYVMEMNPGAVREAIQREMARGGQVFYLYNRVDTIERKVEELQ 849
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P IA AHGQ QLE T+ F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 ALVPDARIAYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 909
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 910 MGLSTLYQLRGRVGRSNRVAYAYFMYEQQKVLNEVSEKRLQAIKDFTELGSGFKIAMRDL 969
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++++ + +V+ID+ I+ LP
Sbjct: 970 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVTR-KQGKNTQTEKTTVEIDLGIDAYLP 1028
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
+ YI +E+ + Q+ + + + L ++G+ P + LL
Sbjct: 1029 TSYIEDERQKIEIYKRIRELESQE--AVDELQDDLLDRFGEYPVEVAHLL 1076
>gi|212696152|ref|ZP_03304280.1| hypothetical protein ANHYDRO_00688 [Anaerococcus hydrogenalis DSM
7454]
gi|212676781|gb|EEB36388.1| hypothetical protein ANHYDRO_00688 [Anaerococcus hydrogenalis DSM
7454]
Length = 1163
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/585 (38%), Positives = 352/585 (60%), Gaps = 10/585 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAE 81
N+ +P+ +S L + W++ K + K A+ ++ DL+ELY R K + + K+ P E
Sbjct: 555 NKGDKPK-ISSLG-SNQWKKAKQRAKKAVDEIADDLVELYAKRSKARGHAFAKDTPWQKE 612
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F F YE T Q ++ +++ D+ E PMDRL+CGDVG+GKTEVALRA F V G Q
Sbjct: 613 FEDSFIYEETDSQLRSIDEIKNDM-EDIKPMDRLLCGDVGYGKTEVALRAAFKAVMDGYQ 671
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QHF + ERF +P I +LSRF SK ++E+++ +K G ++IIVGT
Sbjct: 672 VCFLVPTTILARQHFKTMQERFKYFP-IDCAMLSRFVSKKDQEKYIHNLKSGKIDIIVGT 730
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL + + LGLL++DEEQRFGV+ K+K+ K ++DVLTLSATPIPRTL ++LTG
Sbjct: 731 HRLLSKDIKFKKLGLLIIDEEQRFGVRHKDKLKKLKENIDVLTLSATPIPRTLQMSLTGI 790
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S + PP R P+ T++ + + AI+ ELDR GQV++V R+ +++ + L+
Sbjct: 791 RDMSTLDEPPERRQPVNTYVLEYDFSIIKRAIEKELDRDGQVYFVYNRVYNIDKIYNHLK 850
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P I IAHGQ ++ LE+ ME F G I IL+ T I+E+G+DIQN NTIIV D
Sbjct: 851 LLVPDAKIEIAHGQMSAKSLEKIMEDFVSGEIDILLATTIIETGMDIQNVNTIIVYDSDM 910
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQL+GR+GR+ + ++AY Y +L++ +RL ++++ + G G+++A +D+
Sbjct: 911 MGLSQLYQLKGRIGRSSRSSYAYFTYAKGKVLTEIGEKRLKSIKDFSDFGSGYKIAMRDL 970
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
+RG G I GE Q+G V +G DL+ + L +++ K + S+ + V IDI I+ +P
Sbjct: 971 ELRGAGNILGESQSGQVEAIGYDLYVKFLQQAIDKASGKDIDSIKFNDVYIDIKIDAFIP 1030
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI ++M + + + L+ E L +YG P ++ ++ ++ MA
Sbjct: 1031 ESYIEDPSQKIQMYKRISSIEDLEDYSLL--VEDLIDRYGDIPVMVDNIMYVSLIKSMAD 1088
Query: 562 DIGITKIY-ASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFE 605
+G +I +G++ + NK F+ + S +E ++ L F+
Sbjct: 1089 KLGFDQIREVNGEIRISFNDRNKFSFEEL--SQINEDYKGELAFD 1131
>gi|206603476|gb|EDZ39956.1| Transcription-repair coupling factor [Leptospirillum sp. Group II
'5-way CG']
Length = 1154
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/489 (44%), Positives = 311/489 (63%), Gaps = 5/489 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+R E P TL ++ T W R + K + I+K+ DL++LY R + + +
Sbjct: 536 YRGPEGSTP-TLDRIGGQT-WNRTRQKVRKEIEKISQDLVDLYARRKTVSGHSFSSDLLL 593
Query: 80 A-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY+ TPDQ+ A+ V D+ E TPMDRLI GDVGFGKTE+A+RA F V+
Sbjct: 594 VREFENSFPYDLTPDQEDAWRAVCEDM-EAPTPMDRLILGDVGFGKTEIAMRAAFKAVAD 652
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G Q +L PT +LAKQH++ +RFS +P +++ +SR S+AE + G ++I+
Sbjct: 653 GYQVALLVPTTLLAKQHYESFLDRFSGFP-VRICHISRMVSQAEIRATRKKLSLGEIDIL 711
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GT +L+ + NLGLL++DEEQRFGV QKEK+ S SVDVLTLSATPIPRTL ++L
Sbjct: 712 IGTTALISKETSFRNLGLLIIDEEQRFGVGQKEKLKSRYTSVDVLTLSATPIPRTLQMSL 771
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G R S I TPPP R PI+T + F + ++ AI EL R GQVF++ R++ + +
Sbjct: 772 SGLRGISFIMTPPPGRKPIRTAILTFDRHRIHEAIDRELARDGQVFFIHNRVQTISRMVH 831
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+L + FP V I +AHGQ ++EE MEKF Q +IL+ T IVESGLDI ANTIIV
Sbjct: 832 YLAKLFPEVPIGMAHGQMEDSRMEEVMEKFIQRHYRILVSTAIVESGLDIPAANTIIVNR 891
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
FG+++LYQ+RGRVGR+ ++A+AY P +S L+D A +RL L++ LG G+Q+A
Sbjct: 892 ADMFGISELYQIRGRVGRSGQQAYAYFLIPSESGLTDTARKRLKTLQDNTSLGSGYQIAM 951
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+DM IRG G++ G QQTG + VG+DL+ EM+ E++ E + + + V+ID+
Sbjct: 952 RDMEIRGAGSLLGHQQTGHIALVGLDLYLEMVEEAIQSRIEPEAVPLAREEVRIDLGRES 1011
Query: 499 RLPSEYINH 507
R P +YI H
Sbjct: 1012 RFPEDYIEH 1020
>gi|402831839|ref|ZP_10880511.1| transcription-repair coupling factor [Capnocytophaga sp. CM59]
gi|402280568|gb|EJU29273.1| transcription-repair coupling factor [Capnocytophaga sp. CM59]
Length = 1108
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/560 (39%), Positives = 338/560 (60%), Gaps = 16/560 (2%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQF 86
P L KL + AW+ K K K ++++ +L++LY R + + P + E A F
Sbjct: 491 PPKLYKLG-SAAWKALKQKTKARVKQIAFNLIQLYAKRREAVGYAFAPDSFLQKELEASF 549
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
YE TPDQ KA L+V++D+ E PMDRL+CGDVGFGKTEVA+RA F V KQ VL
Sbjct: 550 IYEDTPDQSKATLEVKQDM-ESARPMDRLVCGDVGFGKTEVAIRAAFKAVDNSKQVAVLV 608
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA QH+ SER P ++V L+RF++ EK + L ++ G ++I++GTH ++
Sbjct: 609 PTTILAFQHYQTFSERLKGLP-VRVEYLNRFRTAKEKNQVLADLEQGKVDILIGTHQIVN 667
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
+V Y NLGLL++DEEQ+FGV K+K+ + + ++DVLTL+ATPIPRTL +L RD S+
Sbjct: 668 EKVKYKNLGLLIIDEEQKFGVAVKDKLKTLRENIDVLTLTATPIPRTLQFSLMAARDLSV 727
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPPP R PI++ + F++E + I YEL RGGQVF++ R++ ++E +Q+ P
Sbjct: 728 ITTPPPNRYPIESQIITFNEEMIRDGIAYELQRGGQVFFIHNRVENIKEVAGMIQRLVPD 787
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
I I HGQ + LEE M F G IL+ T I+ESGLD+ NANTI + + Q FGL+
Sbjct: 788 ARIGIGHGQMDGKDLEEVMLAFINGDYDILVSTTIIESGLDVPNANTIFIHNAQHFGLSD 847
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+Q+RGRVGR++K+A Y P+ S L + + +R+ A+ + +LG G +A KD+ IRG
Sbjct: 848 LHQMRGRVGRSNKKAFCYFITPNLSELPEDSRKRMQAIAQFTDLGSGIHIAMKDLEIRGA 907
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS---------VPYKSVQIDININ 497
G + G +Q+G + ++G D + ++L E+++++ E+ V QID +
Sbjct: 908 GDLLGGEQSGFINDIGFDAYQKILQEAVTELKENEFADLYTDTSHEPVYLTDTQIDSDFE 967
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
P YIN++ + + NE + + L Q+ L ++G P + LL + ++
Sbjct: 968 LLFPDNYINNITERLNLYNELSQLKNE--TELAQYEYRLTDRFGPLPPQAKDLLNSVRIK 1025
Query: 558 RMAADIGITK-IYASGKMVG 576
+A +GI + + GKM+G
Sbjct: 1026 WLATQMGIERLVMKQGKMLG 1045
>gi|417770006|ref|ZP_12417919.1| transcription-repair coupling factor [Leptospira interrogans serovar
Pomona str. Pomona]
gi|418681997|ref|ZP_13243217.1| transcription-repair coupling factor [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|400326007|gb|EJO78276.1| transcription-repair coupling factor [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|409948023|gb|EKN98014.1| transcription-repair coupling factor [Leptospira interrogans serovar
Pomona str. Pomona]
Length = 1180
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/559 (41%), Positives = 358/559 (64%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 573 TESPR-LDSLGKST-WKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 630
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 631 AEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 689
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++VGTH+
Sbjct: 690 MLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHA 748
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 749 ILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRE 808
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++L +
Sbjct: 809 LSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNYLSKL 868
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 869 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 928
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 929 LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 988
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N +P
Sbjct: 989 RGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNFFIPE 1045
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G+ P + ILL+K +R +A
Sbjct: 1046 TYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--IRTLA 1101
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + MK+
Sbjct: 1102 SNLGFEFVTEMKDEIKMKS 1120
>gi|294794147|ref|ZP_06759284.1| transcription-repair coupling factor [Veillonella sp. 3_1_44]
gi|294455717|gb|EFG24089.1| transcription-repair coupling factor [Veillonella sp. 3_1_44]
Length = 1098
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 225/483 (46%), Positives = 321/483 (66%), Gaps = 15/483 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAE 81
NE PR ++K+ W + TK K +I + L+E+Y R + + P P E
Sbjct: 483 NEGDVPR-INKMGGRD-WSKVVTKAKKSIDDLADKLVEIYAQREITEGFAFLPDQPWQQE 540
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPYE T DQ +A +++ + ER PMDRL+ GDVGFGKTEVA+RAIF V +GKQ
Sbjct: 541 FEDAFPYEETKDQLQATAEIKESM-ERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQ 599
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
VL PT VLA+QHF RF+ + +KV +L+RF++ +EK++ L ++ G ++I++GT
Sbjct: 600 VAVLVPTTVLAQQHFQTFLNRFAPF-GVKVDVLNRFRTTSEKKQILKGVEDGSIDILIGT 658
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
HSLL +VV+ +LG+LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L G
Sbjct: 659 HSLLNKKVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGV 718
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
R+ S+I+TPP ERLP++T++ + + AIK EL RGGQV++V R+ + + L+
Sbjct: 719 REMSVINTPPEERLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELLE 778
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
A PG+ AIAHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D +
Sbjct: 779 SALPGLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADR 838
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEKD 440
GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA +D
Sbjct: 839 LGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-ILSEAAEKRLKAIEEFTELGAGFKLAMRD 897
Query: 441 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 500
+ IRG G + G QQ G++ +VG ++ ML E+++K K V+ D++I+P +
Sbjct: 898 LEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQN--------KEVERDVSIDPAI 949
Query: 501 PSE 503
E
Sbjct: 950 DLE 952
>gi|257868298|ref|ZP_05647951.1| transcription-repair coupling factor [Enterococcus casseliflavus
EC30]
gi|257874429|ref|ZP_05654082.1| transcription-repair coupling factor [Enterococcus casseliflavus
EC10]
gi|257802412|gb|EEV31284.1| transcription-repair coupling factor [Enterococcus casseliflavus
EC30]
gi|257808593|gb|EEV37415.1| transcription-repair coupling factor [Enterococcus casseliflavus
EC10]
Length = 1172
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/530 (40%), Positives = 334/530 (63%), Gaps = 8/530 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E+K P+ ++KL + W + K K I+ + DL+ LY R +K + P + E
Sbjct: 554 SESKTPK-INKLGGS-EWAKTKRKVTAKIEDIADDLILLYAKRESEKGYAFQPDDAYQKE 611
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVGFGKTEVALRA F + KQ
Sbjct: 612 FEDAFPYSETDDQLRSTAEIKRDM-EKEKPMDRLLVGDVGFGKTEVALRAAFKAIKESKQ 670
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + +RF +P + VG+LSRF++K ++ E ++ ++ G ++I+VGT
Sbjct: 671 VAFLVPTTILAQQHYETMVDRFEGFP-VNVGVLSRFRTKKQQNETIEQVRKGQVDILVGT 729
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V + +LGLLV+DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 730 HRLLSKDVEFADLGLLVIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMLGV 789
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + V AI+ E+ RGGQVFY+ R+ +E ++ LQ
Sbjct: 790 RDLSVIETPPENRYPIQTYVMEMNPGAVREAIQREMARGGQVFYLYNRVDTIERKVEELQ 849
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P IA AHGQ QLE T+ F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 ALVPDARIAYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 909
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 910 MGLSTLYQLRGRVGRSNRVAYAYFMYEQQKVLNEVSEKRLQAIKDFTELGSGFKIAMRDL 969
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++++ + +V+ID+ I+ LP
Sbjct: 970 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVTR-KQGKNTQTEKTTVEIDLGIDAYLP 1028
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
+ YI +E+ + Q+ + + + L ++G+ P + LL
Sbjct: 1029 TSYIEDERQKIEIYKRIRELESQE--AVDELQDDLLDRFGEYPVEVAHLL 1076
>gi|417764323|ref|ZP_12412292.1| transcription-repair coupling factor [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|418711978|ref|ZP_13272726.1| transcription-repair coupling factor [Leptospira interrogans str. UI
08452]
gi|400353472|gb|EJP05643.1| transcription-repair coupling factor [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|410791557|gb|EKR85230.1| transcription-repair coupling factor [Leptospira interrogans str. UI
08452]
Length = 1180
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/559 (41%), Positives = 358/559 (64%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 573 TESPR-LDSLGKST-WKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 630
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 631 AEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 689
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++VGTH+
Sbjct: 690 MLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHA 748
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 749 ILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRE 808
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++L +
Sbjct: 809 LSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNYLSKL 868
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 869 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 928
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 929 LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 988
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N +P
Sbjct: 989 RGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNFFIPE 1045
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G+ P + ILL+K +R +A
Sbjct: 1046 TYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--IRTLA 1101
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + MK+
Sbjct: 1102 SNLGFEFVTEMKDEIKMKS 1120
>gi|375090114|ref|ZP_09736433.1| transcription-repair coupling factor [Facklamia languida CCUG 37842]
gi|374566007|gb|EHR37262.1| transcription-repair coupling factor [Facklamia languida CCUG 37842]
Length = 1193
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/551 (41%), Positives = 339/551 (61%), Gaps = 13/551 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAE 81
E K PR + KL T W + K K I+ + +L+ LY R ++K + K+ P AE
Sbjct: 558 GEAKTPR-VHKLGGT-EWSKTKQKVSSKIEDIADELIALYAQREQEKGYAFDKDTPEQAE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY TPDQ ++ +++ D+ ER+ PMDRL+ GDVG+GKTEVA+RAIF V GKQ
Sbjct: 616 FEAAFPYVETPDQLQSTQEIKHDM-ERDRPMDRLLIGDVGYGKTEVAMRAIFKAVIEGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
A L PT +LA+QH+ + ERFS YP ++ +LSRF SKA++++ + +K G I+VGT
Sbjct: 675 AAFLVPTTILAQQHYHSLLERFSDYP-FEIRMLSRFVSKADQQQTIKDLKIGACQIVVGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V + +LGLL+VDEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSQDVDFLDLGLLIVDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMIGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ + + SAI+ E+ RGGQ FY+ R+ + + +Q
Sbjct: 794 RDLSVIETPPSNRYPVQTYVMERNDGAIKSAIEREMARGGQCFYLYNRVATIYQRAQAIQ 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A+AHGQ +LE + F QG +L+ T I+E+G+DI NANT+ + +
Sbjct: 854 DLVPQARVAVAHGQMSEVELENILYDFIQGEYDVLVTTTIIETGVDIPNANTLFIDHADR 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR ++ A AYL Y LS+ + +RL A+ E ELG GF++A +D+
Sbjct: 914 MGLSTLYQLRGRVGRTNRIAFAYLMYDPMKQLSEISEKRLNAIREFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININPR 499
IRG G + G QQ+G + +VG DL+ +ML E++ + + ++V +ID+ I+
Sbjct: 974 SIRGAGNLLGAQQSGFIDSVGFDLYSQMLKEAVDRKQNKEGTGLGTRTVETEIDLGIDAY 1033
Query: 500 LPSEYINHLENPMEMVNEAEKAAEQ--DIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
LP+ YI + A KA +Q D + L +YG+ P + LL ++
Sbjct: 1034 LPASYIQDERQKI----AAYKAIQQINDAGSHRDMQDQLIDRYGEYPDPVADLLDIALLQ 1089
Query: 558 RMAADIGITKI 568
+A+ IGI +I
Sbjct: 1090 SLASQIGILQI 1100
>gi|257871350|ref|ZP_05651003.1| transcription-repair coupling factor [Enterococcus gallinarum EG2]
gi|357051465|ref|ZP_09112654.1| transcription-repair coupling factor [Enterococcus saccharolyticus
30_1]
gi|257805514|gb|EEV34336.1| transcription-repair coupling factor [Enterococcus gallinarum EG2]
gi|355379761|gb|EHG26913.1| transcription-repair coupling factor [Enterococcus saccharolyticus
30_1]
Length = 1173
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/533 (40%), Positives = 333/533 (62%), Gaps = 8/533 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
+ +E+K P+ ++KL + W + K K I+ + DL+ LY R +K + P +
Sbjct: 551 YVASESKTPK-INKLGGS-EWAKTKRKVSAKIEDIADDLILLYAKRESEKGYAFQPDDGY 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVGFGKTEVALRA F +
Sbjct: 609 QKEFEDAFPYSETDDQLRSTAEIKRDM-EKEKPMDRLLVGDVGFGKTEVALRAAFKAIKE 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ + +RF +P + VGLLSRF++K ++ E ++ +K G ++I+
Sbjct: 668 SKQVAFLVPTTILAQQHYETMLDRFEGFP-VNVGLLSRFRTKKQQTETIEQVKKGQIDIL 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL V + +LGLLV+DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHRLLSKDVEFADLGLLVIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + V AI E+ RGGQVFY+ R+ +E ++
Sbjct: 787 LGVRDLSVIETPPENRYPIQTYVMEMNPGAVREAILREMARGGQVFYLYNRVDTIERKVE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P I AHGQ QLE T+ F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 847 ELQALVPDARIGYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVEN 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A
Sbjct: 907 ADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G QQ G + VG D++ +ML ES+++ + +V+ID+ I+
Sbjct: 967 RDLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSESVAR-KQGKNTQAEKTTVEIDLGIDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
LP+ YI +E+ + Q+ + + + L ++G+ P + LL
Sbjct: 1026 YLPTSYIEDERQKIEIYKRIRELDSQE--AVDELQDDLLDRFGEYPVEVAHLL 1076
>gi|388257619|ref|ZP_10134798.1| transcription-repair coupling protein Mfd [Cellvibrio sp. BR]
gi|387938786|gb|EIK45338.1| transcription-repair coupling protein Mfd [Cellvibrio sp. BR]
Length = 1153
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/541 (38%), Positives = 331/541 (61%), Gaps = 8/541 (1%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK-NPAIAEFAAQFPYEPTPDQK 95
+ +W++ + K I+ +L+E+Y R +K +P A FAA FP+E T DQ+
Sbjct: 554 SESWQKARRKAAEQIRDTAAELLEVYARRAARKGYAFPDPKTAYEAFAASFPFEETADQQ 613
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
+A V +D+ + PMDRL+CGDVGFGKTEVA+RA F GKQ ++LAPT +LA+QH
Sbjct: 614 RAIEAVIKDMLSNK-PMDRLVCGDVGFGKTEVAMRAAFIASHGGKQVVILAPTTLLAQQH 672
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
++ + +RF+ +P I V +LSRF++ E + L+ I G ++I+VGTH LL + + NLG
Sbjct: 673 YESLKDRFADWP-ITVEVLSRFRTTKEVNQVLERIAEGKVDIVVGTHKLLSPDIKFKNLG 731
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL++DEE RFGV+QK++I + + +D+LTL+ATPIPRTL +++ G RD S+I+TPP RL
Sbjct: 732 LLIIDEEHRFGVRQKDQIKALRAEIDILTLTATPIPRTLNMSMAGIRDLSIIATPPARRL 791
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
+KT + + + + AI E+ RGGQV+Y+ + +E+ +Q+ P I I HGQ
Sbjct: 792 SVKTFVRTYDEATIKEAILREILRGGQVYYLHNEVDTIEKVAREIQELIPEARIGIGHGQ 851
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
R LE M F I++CT I+E+G+DI +ANTII+ +FGLAQL+QLRGRVG
Sbjct: 852 MRERDLERVMSDFYHKRFNIMVCTTIIETGIDIPSANTIIINRADKFGLAQLHQLRGRVG 911
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+ +A+AYL PD+ ++D A +RL A+ +LG GF LA DM IRG G + G++Q+
Sbjct: 912 RSHHQAYAYLLTPDRRAMTDDAQKRLEAISAAEDLGAGFTLATYDMEIRGAGELLGDEQS 971
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVP---YKSVQIDININPRLPSEYINHLENPM 512
G + +G L+ +ML ++ + + + ++++I++ I +P++Y+ + +
Sbjct: 972 GQIQTIGFSLYMDMLDRAVKAIRQGKQADLEKAMSEAIEINLRIPALIPADYLPDVHTRL 1031
Query: 513 EMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASG 572
M A ++ L + ++G P ++ L + ++ A IGITK+ A+
Sbjct: 1032 VMYKRLASAENEE--SLRDLQVEMIDRFGLLPEQIKNLFRVTQIKITAEAIGITKLEANA 1089
Query: 573 K 573
+
Sbjct: 1090 R 1090
>gi|268318293|ref|YP_003292012.1| transcription-repair coupling factor [Rhodothermus marinus DSM 4252]
gi|262335827|gb|ACY49624.1| transcription-repair coupling factor [Rhodothermus marinus DSM 4252]
Length = 1112
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/568 (40%), Positives = 339/568 (59%), Gaps = 15/568 (2%)
Query: 9 CTCGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 68
+ ++ + + E +PR L+KL + WE+ K + K ++ + DL+ LY R
Sbjct: 476 VSVNALHKLHRYTGREGHQPR-LTKLG-SGQWEKVKARTKKRVKDIARDLIRLYAKRKAS 533
Query: 69 KRPPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 127
+ + P E A F YE TPDQ A V+RD+ E+ PMDRL+CGDVGFGKTE+
Sbjct: 534 RGFAFSPDTVWQREMEAAFEYEDTPDQAAAAEAVKRDM-EQPVPMDRLVCGDVGFGKTEI 592
Query: 128 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 187
A+RA F V GKQ VL PT +LA QH++ + R + YP +++ +LSRF+S A + L
Sbjct: 593 AIRAAFKAVQDGKQVAVLVPTTILADQHYETFTRRLAPYP-VRIEVLSRFRSPARQRAVL 651
Query: 188 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 247
+ G ++II+GTH LL V + +LGLL++DEEQRFGV KE++ ++ VD LTL+A
Sbjct: 652 RDLAAGKVDIIIGTHRLLSKDVQFKDLGLLIIDEEQRFGVAAKERLRQLRVEVDTLTLTA 711
Query: 248 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 307
TPIPRTL AL G RD S+ISTPPP R PI T + F + + AI+YE+ RGGQVF++
Sbjct: 712 TPIPRTLQFALMGARDLSIISTPPPNRQPIVTEIHTFDETLIRDAIRYEISRGGQVFFIH 771
Query: 308 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 367
R++ + E LQ P V IA+AHGQ R+LE M F +L+ TNI+ESGLD
Sbjct: 772 NRVQSIYEMAARLQAIVPDVRIAVAHGQMKPRELERVMHDFMARKYDVLVSTNIIESGLD 831
Query: 368 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 427
I NANTII+ +QFGLA L+QLRGRVGR+D++A YL P L+ +A +RL A+EE
Sbjct: 832 IPNANTIIINHAEQFGLADLHQLRGRVGRSDRKAFCYLLVPSIHGLTREARQRLQAIEEF 891
Query: 428 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV-- 485
ELG GF +A +D+ IRG G + G +Q+G + +G + + ++L E++ ++ E V
Sbjct: 892 SELGSGFSIAMRDLDIRGAGNLLGAEQSGFIEEIGFETYQQILDEAIRELREEEFADVLG 951
Query: 486 --PYK--SVQIDININPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQY 540
P K +D+ + +P Y++ + +E +N + +E D + F E L ++
Sbjct: 952 APPPKPPETSVDVEADAFIPETYVS---SNVERLNLYRRLSEATDEAAIEAFREELADRF 1008
Query: 541 GKEPYSMEILLKKLYVRRMAADIGITKI 568
G P ++ LL ++ + + + K+
Sbjct: 1009 GPVPPEVDNLLWAARLKLLGQALRLPKV 1036
>gi|294786766|ref|ZP_06752020.1| transcription-repair coupling factor [Parascardovia denticolens
F0305]
gi|315226389|ref|ZP_07868177.1| transcription-repair coupling factor [Parascardovia denticolens DSM
10105 = JCM 12538]
gi|294485599|gb|EFG33233.1| transcription-repair coupling factor [Parascardovia denticolens
F0305]
gi|315120521|gb|EFT83653.1| transcription-repair coupling factor [Parascardovia denticolens DSM
10105 = JCM 12538]
Length = 1206
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/546 (38%), Positives = 338/546 (61%), Gaps = 8/546 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYE 89
L+KL + W + K K + ++++ DL++LY R + + + P P E FPY+
Sbjct: 599 LNKLGGSD-WSQTKAKARKKVKEIAQDLVKLYAARQRTQGFAFSPDTPWQRELEEAFPYQ 657
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ +V+ D+ E+ PMDRLICGDVGFGKTE+A+RA F + KQ VL PT
Sbjct: 658 ETPDQLTTIDEVKADM-EKPIPMDRLICGDVGFGKTEIAVRAAFKAIQDSKQVAVLVPTT 716
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QHF+ ++R+ +P + V ++SRFQS AE +E ++ ++ G +++++GTH LL ++
Sbjct: 717 LLAQQHFETFTDRYEGFP-VTVKMMSRFQSAAENKETIEGLRDGSVDLVIGTHKLLNPQI 775
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGL+++DEEQRFGV+ KE + + + +VDVL+LSATPIPRTL +A+TG R+ S + T
Sbjct: 776 KFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLDT 835
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP +RLP+ T++ A+ +V++AI+ EL RGGQVF+V R++ + + ++ P I
Sbjct: 836 PPEDRLPVLTYVGAYEDTQVVAAIRRELLRGGQVFFVHNRVQDISKVAAHIKDLVPEAKI 895
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+AHG+ +QL+ + F I +L+CT IVE+GLDI NANT+IV +FGL+QL+Q
Sbjct: 896 GMAHGKMGEKQLDNIIHDFWHRDIDVLVCTTIVETGLDISNANTLIVDRADRFGLSQLHQ 955
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR + A+AY Y ++ A +RL+ + + LG G+ +A KD+ IRG G +
Sbjct: 956 LRGRVGRGWERAYAYFLYDPAKPMTQTAHDRLSTIAQNTALGAGYDVAMKDLEIRGTGNL 1015
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G +Q+G + VG DL+ M+ +++ E + +D+ + +P YI+ +
Sbjct: 1016 LGGEQSGHIEGVGFDLYVRMVSDAVQDYKESERTDA--VATTVDLPVEASIPPSYIDSDK 1073
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569
+E+ + AA Q + + L +YGK P ++++L +R A +GIT +
Sbjct: 1074 LRLEVYRKV--AAAQGEEDFQEIRDELTDRYGKPPQALDLLFAVARLRSRAKAMGITDLI 1131
Query: 570 ASGKMV 575
A G+ +
Sbjct: 1132 AQGRNI 1137
>gi|238018751|ref|ZP_04599177.1| hypothetical protein VEIDISOL_00609 [Veillonella dispar ATCC 17748]
gi|237864517|gb|EEP65807.1| hypothetical protein VEIDISOL_00609 [Veillonella dispar ATCC 17748]
Length = 1098
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 239/550 (43%), Positives = 345/550 (62%), Gaps = 13/550 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAE 81
NE PR ++K+ W + TK K +I + L++LY R + Q P P E
Sbjct: 483 NEGDVPR-INKMGGRD-WAKVVTKAKKSIDDLADKLVDLYAQREITQGFAFLPDQPWQQE 540
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPYE T DQ +A +++ + E+ PMDRL+ GDVGFGKTEVA+RAIF V +GKQ
Sbjct: 541 FEDAFPYEETEDQLQATAEIKASM-EKPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQ 599
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
VL PT VLA+QHF RF+ + +KV +L+RF+S AEK++ L ++ G +++++GT
Sbjct: 600 VAVLVPTTVLAQQHFQTFLNRFAPF-GVKVDVLNRFRSTAEKKQVLKGVEDGSIDVLIGT 658
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
HSLL +VV+ +LG+LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L G
Sbjct: 659 HSLLNKKVVFKDLGMLVVDEEQRFGVAQKEKWKEWANNIDVLTLSATPIPRTLHMSLVGV 718
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
R+ S+I+TPP ERLP++T++ + V AIK EL RGGQV++V R+ + + L+
Sbjct: 719 REMSVINTPPEERLPVQTYVVEYDMNLVADAIKRELARGGQVYFVYNRVASINHMGELLE 778
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+A PG+ AIAHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D +
Sbjct: 779 EALPGLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADR 838
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEKD 440
GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA +D
Sbjct: 839 LGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-MLSEAAEKRLKAIEEFTELGAGFKLAMRD 897
Query: 441 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 500
+ IRG G + G QQ G++ +VG ++ ML E+++K V ID+ ++ +
Sbjct: 898 LEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQNKEVEREVSIDPAIDLEVDAFI 957
Query: 501 PSEYINHLENPMEMVNEAE--KAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
YI + + K+ EQ L T+ L ++G ++ LL+ ++
Sbjct: 958 DDAYIKDSARKISVYQRLLHIKSKEQ----LDDMTDELIDRFGTPTDPVDRLLRIAQIKE 1013
Query: 559 MAADIGITKI 568
A +GI I
Sbjct: 1014 QARLLGIKSI 1023
>gi|431792128|ref|YP_007219033.1| transcription-repair coupling factor Mfd [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430782354|gb|AGA67637.1| transcription-repair coupling factor Mfd [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 1223
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/539 (40%), Positives = 333/539 (61%), Gaps = 31/539 (5%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLK-QKRPPYPKNPAIAEFAAQFPYEPTPDQKKAF 98
W+R K K K AI++M DL++LY R Q N EF +FPY+ TPDQ +
Sbjct: 623 WKRVKAKAKNAIKEMAFDLVKLYAQREAIQGYAFSADNVWQQEFEEKFPYQETPDQMQCI 682
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++V+ D+ R PMDRL+CGDVG+GKTEVALRA F V KQ VL PT +LA+QH++
Sbjct: 683 IEVKEDMM-RTRPMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVAVLVPTTILAQQHYNT 741
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
ERF YP + + +LSRF++ E++ L +K G ++I+VGTH L+ + + +LGLL+
Sbjct: 742 FLERFMGYP-VSIQMLSRFRTTKEQKLILQGLKEGAIDIVVGTHKLVSESIKFKDLGLLI 800
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
VDEEQRFGV KEK+ + K +VDVLTLSATPIPRTL+++L G RD S+I TPP +R P++
Sbjct: 801 VDEEQRFGVSHKEKLKTLKTNVDVLTLSATPIPRTLHMSLVGVRDLSVIDTPPEDRFPVQ 860
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T+++ F + V AI+ E+ RGGQVF+V R++ +++ + FL Q P IAHGQ
Sbjct: 861 TYVAEFRPDVVREAIRREIQRGGQVFFVHNRVEDMDQVVRFLSQLVPEARYEIAHGQMSE 920
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
++LE M F + +L+CT I+E+GLD+ N NT+I+ + + GL QLYQLRGRVGR++
Sbjct: 921 KELERGMLNFLEQESDVLVCTTIIETGLDMPNVNTLIIDEADRLGLGQLYQLRGRVGRSN 980
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
++A++Y Y + +LS+ A +RLAA+ E E G G ++A +D+ IRG G + G QQ G +
Sbjct: 981 RKAYSYFLYKPQKILSEVAEKRLAAIREFTEFGSGLKIAMRDLEIRGAGNLVGAQQHGHL 1040
Query: 459 GNVGVDLFFEMLFESL-----SKVDEHCVISVPYKSVQIDININPRLPSEYINH------ 507
+G +L+ +ML E++ KV+E S I++ ++ LP Y+
Sbjct: 1041 AALGFELYSQMLKEAVQEIKGEKVEERIETS-------IEVAVDAYLPDSYVGERKLKAA 1093
Query: 508 -LENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
+ + + NE + ++ + L ++G P +E LLK + ++ A+ + I
Sbjct: 1094 LYQRMISIDNEEDHSS---------MIDELIDRFGAPPREVENLLKIVRIKWCASALKI 1143
>gi|372209905|ref|ZP_09497707.1| transcription-repair coupling factor [Flavobacteriaceae bacterium
S85]
Length = 1108
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/569 (40%), Positives = 342/569 (60%), Gaps = 18/569 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
F + K P+ + KL + AW++ K K K ++++ DL++LY R QK Y P +
Sbjct: 483 FNGKDGKVPK-VHKLG-SPAWKKAKQKAKTKVKQIAFDLIQLYAKRKNQKGFAYDPDSYL 540
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F +E TPDQ KA DV+ D+ E E PMDRLICGDVGFGKTEVA+RA F V
Sbjct: 541 QHELEASFMFEDTPDQYKATQDVKSDM-ESEKPMDRLICGDVGFGKTEVAIRAAFKAVDN 599
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ VL PT +LA QHF +R +P + + L+RF++ +K + + G L+II
Sbjct: 600 GKQVAVLVPTTILAFQHFKSFRKRLEDFP-VNINYLNRFKTAKQKRIITEELAEGKLDII 658
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH L+ ++ Y +LGLL++DEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L
Sbjct: 659 IGTHQLVSDKINYKDLGLLIIDEEQKFGVAAKDKLKTIKENVDTLTLTATPIPRTLQFSL 718
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
RD S+I+TPPP R PI+T + FS+E + A+ YE+ RGGQ+F++ R+ ++E
Sbjct: 719 MAARDLSVIATPPPNRHPIETQVIGFSEETIRDAVMYEISRGGQIFFIHNRVDNIKEVAG 778
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ+ P I I HGQ R+LEE M F G IL+ T I+ESGLD+ NANTI +
Sbjct: 779 MLQRLVPDAKIGIGHGQMEGRKLEEIMVNFMDGHFDILVATTIIESGLDVPNANTIFINH 838
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
FGL+ L+Q+RGRVGR++K+A Y P ++++ A +R+ ALE +LG G +A
Sbjct: 839 ANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYHMMTEDARKRIQALEMFSDLGSGINIAM 898
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV---------DEHCVISVPYKS 489
KD+ IRG G + G +Q+G + ++G D + ++L E++ ++ DE + Y S
Sbjct: 899 KDLEIRGAGDLLGGEQSGFITDIGFDTYQKILEEAVKELKEKEFKDLYDEDSTENKDYVS 958
Query: 490 -VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 548
+QID + P +YIN + + + + + E+D L F + L ++G+ P +
Sbjct: 959 DIQIDTDFEILFPDDYINAIAERLSLYKQLGELTEED--ELKSFEKQLVDRFGELPTQVV 1016
Query: 549 ILLKKLYVRRMAADIGITKIYASGK-MVG 576
LL + ++ +A +GI K+ K M+G
Sbjct: 1017 DLLDSVRIKWLAKQLGIEKLVLKQKRMIG 1045
>gi|311743167|ref|ZP_07716975.1| transcription-repair coupling factor [Aeromicrobium marinum DSM
15272]
gi|311313847|gb|EFQ83756.1| transcription-repair coupling factor [Aeromicrobium marinum DSM
15272]
Length = 1169
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/547 (39%), Positives = 337/547 (61%), Gaps = 9/547 (1%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPY 88
TL +L + W RK K + A++++ +L++LY R + + P P AE F Y
Sbjct: 567 TLDRLGGSD-WTNRKNKARKAVRQIAGELIKLYAARQSTQGHAFGPDTPWQAELEDAFAY 625
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
TPDQ +V+RD+ ER PMDRL+CGDVG+GKTE+A+RA F + GKQ ++L PT
Sbjct: 626 VETPDQLSTIEEVKRDM-ERVVPMDRLVCGDVGYGKTEIAVRAAFKAIQDGKQVILLVPT 684
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
+L +QH+ +ERF ++P + + LSRFQ+++E + L+ + G +++++GTH LL
Sbjct: 685 TLLVQQHYATFAERFGQFP-VSIRPLSRFQTESESKATLEALAEGSVDLVIGTHRLLQPG 743
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
V +LGL++VDEEQRFGV+ KE + + +VDVL++SATPIPRTL +A+TG R+ S I+
Sbjct: 744 VRIKDLGLVIVDEEQRFGVEHKEALKHLRAAVDVLSMSATPIPRTLEMAVTGIREMSTIA 803
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
TPP ER P+ + + + +V++AI+ EL R GQ FY+ R++ +++ + L+Q P V
Sbjct: 804 TPPEERHPVLSFVGPYEDRQVVAAIRRELLREGQAFYIHNRVQSIDKAVARLRQLVPEVR 863
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+A AHGQ QLE+ M F + +L+CT IVESGLD+ NANT+I++ GL+QL+
Sbjct: 864 VAAAHGQMSEAQLEQVMLDFWEKRYDVLVCTTIVESGLDVSNANTMIIERSDTLGLSQLH 923
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
QLRGRVGR + A+AY YP L++ A +RLA + + ELG G +A KD+ IRG G
Sbjct: 924 QLRGRVGRGSERAYAYFLYPPDKPLTETAHDRLATIAQHSELGGGMAVAMKDLEIRGAGN 983
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHL 508
+ G +Q+G + +VG DL+ ++ E++++ + P + V+I++ I LP Y+
Sbjct: 984 LLGGEQSGHIADVGFDLYVRLVGEAVAEFRGE---AEPEREVRIELPIEAHLPLTYLPSE 1040
Query: 509 ENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+EM D +++ L +YG+ P +E LL+ +R D G+T++
Sbjct: 1041 RLRLEMYKRLAGVRTPD--DVVELRAELVDRYGEPPEVVETLLQVALLRIKVRDAGLTEV 1098
Query: 569 YASGKMV 575
A+G V
Sbjct: 1099 TAAGSSV 1105
>gi|300857300|ref|YP_003782284.1| transcription-repair coupling factor [Clostridium ljungdahlii DSM
13528]
gi|300437415|gb|ADK17182.1| predicted transcription-repair coupling factor [Clostridium
ljungdahlii DSM 13528]
Length = 1173
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/547 (40%), Positives = 347/547 (63%), Gaps = 9/547 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 81
+E K P+ +SKL + W + K K K +I+++ DL++LY R K Y K+ +
Sbjct: 562 SEGKSPK-VSKLGGSD-WAKAKKKVKKSIEEIAEDLVKLYAIRSTLKGYKYSKDTVWQKQ 619
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F +FPYE TPDQ D+++D+ E + MDRL+CGDVG+GKTEVA+RA F V GKQ
Sbjct: 620 FEDEFPYEETPDQLTTIQDIKQDM-ESDKVMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQ 678
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ +RFS +P +K+ ++SRF++ A+++ + +K G ++I++GT
Sbjct: 679 VAFLVPTTILAQQHYNNFVQRFSDFP-VKIDMISRFRTTAQQKASIKAVKVGDVDILIGT 737
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L V + +LGLL++DEEQRFGV KEKI + +VDVLTLSATPIPRTL+++L G
Sbjct: 738 HRILQKDVQFKDLGLLIIDEEQRFGVSHKEKIKKIRKNVDVLTLSATPIPRTLHMSLVGA 797
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP ER PI+T++ ++ + + AI E++RGGQV++V R++ ++E ++
Sbjct: 798 RDISVIETPPEERYPIQTYVVEYNDQLIRDAILREINRGGQVYFVYNRVESIKEMASYIA 857
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P +A+AHGQ R+LE + F + +L+ T I+E+G+DIQN NT+I+ D +
Sbjct: 858 KLIPEAKVAVAHGQMQERELENIIVDFMKNEYNVLVATTIIETGMDIQNVNTMIIYDADK 917
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A++E ELG GF++A KD+
Sbjct: 918 MGLSQLYQLRGRVGRTNRMAYCYLSYRRDKVLTEVAEKRLKAIKEFTELGSGFKIALKDL 977
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G Q G + VG DL+ ML +++ K+ + + P ++ +++ I+ +P
Sbjct: 978 EIRGAGNMMGASQHGHMAAVGYDLYCRMLEDTI-KLIKGDIDKEPVETT-VELKIDAYIP 1035
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI +E+ + + D ++ E L ++ P S+ L+ Y+R M+
Sbjct: 1036 DNYIKSEVQKIEIYKKIAAISSYD--DMLDIKEELEDRFSDIPTSVYNLMDIAYIRSMSK 1093
Query: 562 DIGITKI 568
IGI +I
Sbjct: 1094 KIGIEEI 1100
>gi|310639514|ref|YP_003944272.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2]
gi|386038728|ref|YP_005957682.1| transcription-repair-coupling factor TRCF; ATP-dependent helicase mfd
[Paenibacillus polymyxa M1]
gi|309244464|gb|ADO54031.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2]
gi|343094766|emb|CCC82975.1| transcription-repair-coupling factor TRCF; ATP-dependent helicase mfd
[Paenibacillus polymyxa M1]
Length = 1175
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/490 (42%), Positives = 317/490 (64%), Gaps = 13/490 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNPAI 79
+E K P+ + KL W R K+K + ++Q + DL++LY R Q P + +P
Sbjct: 547 SEDKEPK-IYKLG-GNEWTRVKSKVRSSVQDIADDLIKLYAER--QSAPGFAFEKDSPEQ 602
Query: 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 139
EF FPY+ T DQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F G
Sbjct: 603 QEFEDMFPYDETRDQVRAIEEIKKDM-EQSRPMDRLLCGDVGYGKTEVAIRAAFKSAIEG 661
Query: 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 199
KQ VL PT +LA+QH++ ERFS YP + +LSRF+S+ E+ E ++ G ++I++
Sbjct: 662 KQVAVLVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRSRKEQNETTKGVRQGTVDIVI 720
Query: 200 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 259
GTH LL +V+ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++
Sbjct: 721 GTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML 780
Query: 260 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 319
G RD S+I TPP R P++T++ S+ V AI+ E+ RGGQV+Y+ R++G++E
Sbjct: 781 GVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIEREMARGGQVYYLYNRVQGIQEMAAE 840
Query: 320 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379
+ P + + HGQ +LE+T+ F G +L+ T+I+E+G+DI N NT+IV D
Sbjct: 841 INALVPDAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA 900
Query: 380 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 439
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E ELG GF++A +
Sbjct: 901 DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR 960
Query: 440 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCV----ISVPYKSVQIDIN 495
D+ IRG G + G +Q G + +VG DL+ +ML E ++K + S S ID++
Sbjct: 961 DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVSVLGEEDQSNRNWSTSIDLS 1020
Query: 496 INPRLPSEYI 505
++ LP +YI
Sbjct: 1021 VDAYLPGDYI 1030
>gi|313892911|ref|ZP_07826488.1| transcription-repair coupling factor [Veillonella sp. oral taxon 158
str. F0412]
gi|313442264|gb|EFR60679.1| transcription-repair coupling factor [Veillonella sp. oral taxon 158
str. F0412]
Length = 1055
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 241/567 (42%), Positives = 351/567 (61%), Gaps = 13/567 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAE 81
NE PR + K+ W + TK K +I + L+E+Y R + + P P E
Sbjct: 483 NEGDVPR-IHKMGGRD-WAKVVTKAKKSIDDLADKLVEIYAQREITEGFAFLPDQPWQQE 540
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPYE T DQ +A +++ + ER PMDRL+ GDVGFGKTEVA+RAIF V +GKQ
Sbjct: 541 FEDAFPYEETEDQLQATAEIKESM-ERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQ 599
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
VL PT VLA+QHF RF+ + +KV +L+RF+S AEK++ L +++G +++++GT
Sbjct: 600 VAVLVPTTVLAQQHFQTFLNRFAPF-GVKVDVLNRFRSTAEKKQVLKGVENGSIDVLIGT 658
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
HSLL +VV+ +LG+LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L G
Sbjct: 659 HSLLNKKVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGV 718
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
R+ S+I+TPP ERLP++T++ + V AIK EL RGGQV++V R+ + + L+
Sbjct: 719 REMSVINTPPEERLPVQTYVVEYDMNLVADAIKRELARGGQVYFVYNRVASINHMGELLE 778
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
A P + AIAHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D +
Sbjct: 779 AALPDLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADR 838
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEKD 440
GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA +D
Sbjct: 839 LGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-MLSEAAEKRLKAIEEFTELGAGFKLAMRD 897
Query: 441 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 500
+ IRG G + G QQ G++ +VG ++ ML E+++K V ID+ ++ +
Sbjct: 898 LEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQNKEVEREVSIDPAIDLEVDAFI 957
Query: 501 PSEYINHLENPMEMVNE--AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
EYI + + K+ EQ L T+ L ++G ++ LL+ ++
Sbjct: 958 DDEYIKDSARKISVYQRLLHIKSKEQ----LDDMTDELIDRFGTPTDPVDRLLRIAQIKE 1013
Query: 559 MAADIGITKIYASGKMVGMKTNMNKKV 585
A +GI I K + + + + K+
Sbjct: 1014 QARLLGIKSIVRRDKQLTIHWHDDSKM 1040
>gi|456865375|gb|EMF83735.1| transcription-repair coupling factor [Leptospira weilii serovar Topaz
str. LT2116]
Length = 1171
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 231/559 (41%), Positives = 355/559 (63%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 564 TESPR-LDSLGKST-WKKTKDRVQKAVETLAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 621
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 622 AEFEYEETPDQIEAIEAVKKDL-ESSVPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 680
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE E L G ++++VGTH+
Sbjct: 681 MLAPTTILALQHYNTFKNRFQNYP-LRVELVSRFKTSAEIREILSDFSLGKIDMVVGTHA 739
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 740 ILSSKLKPKNLGLLIIDEEQRFGVNHKEAIKRFKNLVDVLTLTATPIPRTLHMALTGIRE 799
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ ++ + AI+ E+ R GQVFY+ R++ +E+ +L +
Sbjct: 800 LSIIATPPKNRQSVETYVLEEDEDLIADAIRNEIQRDGQVFYLYNRVETIEQETKYLGEI 859
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 860 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 919
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AYL P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 920 LSQLYQIRGRVGRSDRKAFAYLLLPKDRVVTEQAEKRLNTIYEYQELGSGFKVAMRDLEI 979
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ +ML E++++V E + V + +N N +P
Sbjct: 980 RGAGNLLGKEQSGDIMEVGFDLYVQMLEEAIARVKGEEVAVEV---RTSVTLNTNFFIPE 1036
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G P ILL+K +R +A
Sbjct: 1037 TYISDTRQKIEFYKKFEGA--RDLQEIDEVYREMEERFGDPPEDARTFILLEK--IRTLA 1092
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + MK+
Sbjct: 1093 SNLGFESVAEMKDEIKMKS 1111
>gi|383785577|ref|YP_005470147.1| transcriptionrepair coupling factor [Leptospirillum ferrooxidans
C2-3]
gi|383084490|dbj|BAM08017.1| putative transcriptionrepair coupling factor [Leptospirillum
ferrooxidans C2-3]
Length = 1121
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/580 (39%), Positives = 352/580 (60%), Gaps = 20/580 (3%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA-IAEFAAQFPYEPTPDQKKA 97
+W++ +++ + I+K+ +L++LY R P+ ++ I+EF FP++ TPDQ++A
Sbjct: 533 SWQKTRSRVRKEIEKISQELVDLYAKRKALPGFPFSQDSVMISEFENAFPHDLTPDQEEA 592
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157
D+ D+ E TPMDRL+ G+VGFGKTEVA+RA F V+ GKQ VL PT +L QHF+
Sbjct: 593 TRDIREDM-ESPTPMDRLVLGEVGFGKTEVAMRAAFKAVADGKQVAVLVPTTLLCLQHFE 651
Query: 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217
ERFS +P ++V +SR + E+ + G ++I++GT +LLG++ ++ +LGLL
Sbjct: 652 TFKERFSGFP-VRVEQISRILTAKEQRLLRQDLSEGKIDIMIGTSALLGAQNIFRDLGLL 710
Query: 218 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 277
++DEEQRFGV KEK+ + +VDVLTLSATPIPRTL ++L+G R S I TPPP R PI
Sbjct: 711 IIDEEQRFGVGHKEKLKNKYPTVDVLTLSATPIPRTLQMSLSGLRGISFIMTPPPGRKPI 770
Query: 278 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 337
KT + F + ++ AI EL R GQVF++ R+ + ++ FPGV + +AHGQ
Sbjct: 771 KTAILPFDRHRIREAIDRELARDGQVFFIHNRVSSISRMAHYISSLFPGVPVGVAHGQMD 830
Query: 338 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 397
S+ +E M++F G +IL+ T IVESGLDI ANTII+ FG+A+LYQLRGRVGR+
Sbjct: 831 SQLMETIMDRFISGHYRILVSTAIVESGLDIPQANTIIINRSDLFGIAELYQLRGRVGRS 890
Query: 398 DKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 457
+A+ Y + L++ A +RL L++ ELG G+Q+A +D+ IRG G++ G QQTG
Sbjct: 891 GTQAYCYFLVAGEGGLTELAKKRLKTLQDNTELGSGYQIAMRDLEIRGAGSLLGHQQTGH 950
Query: 458 VGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE 517
+ VG+DL+ EM+ E++ E I V ++ +ID+ RLP +Y+ H P ++
Sbjct: 951 ISMVGLDLYMEMVEEAIQTRVEPVAIPVVRETPRIDLGREARLPEDYVVH---PGLRIDF 1007
Query: 518 AEKAAE--QDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 575
+ A +D+ + Q LR ++G P S L+ +R M +GI+++ + +
Sbjct: 1008 YRRLAHSFKDL-EIDQIESELRDRFGPLPRSARALILGAKIRVMTTRMGISEVRLKDREI 1066
Query: 576 GMKTNMNK--------KVFKMMIDSMTSEVHRN-SLTFEG 606
+K + K K+ + D +T HR+ S T G
Sbjct: 1067 FLKPSAEKALSPRNAGKIAQAFPDRIT--FHRDGSFTLSG 1104
>gi|380302244|ref|ZP_09851937.1| transcription-repair coupling factor [Brachybacterium squillarum
M-6-3]
Length = 1191
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 218/539 (40%), Positives = 333/539 (61%), Gaps = 11/539 (2%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFPYEPTPDQKK 96
W + K++ + AI+++ +L+ LY R Q P + P P E F + TPDQ
Sbjct: 588 WAKTKSRARKAIREIADELVRLYSAR--QSAPGHAFGPDTPWQRELEDAFEFVETPDQLS 645
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
DV+ D+ E+ PMDRLI GDVG+GKTEVA+RA F V GKQ VLAPT +LA+QH
Sbjct: 646 TLDDVKADM-EKTVPMDRLILGDVGYGKTEVAVRAAFKAVQDGKQVAVLAPTTLLAQQHL 704
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
D +ER++ +P + V LSRFQ A+ E ++ ++ G +++++GTH LL +V + +LGL
Sbjct: 705 DTFTERYTGFP-VTVRGLSRFQPAADSERTVEGLRTGEVDVVIGTHRLLTGQVRFKDLGL 763
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L+VDEEQRFGV+ KE + + + VDVL +SATPIPRTL +A+TG R+ S+++TPP ER P
Sbjct: 764 LIVDEEQRFGVEHKETLKALRTDVDVLAMSATPIPRTLEMAVTGIREMSILATPPEERHP 823
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
+ T++ A ++V +AI+ EL R GQVFY+ R++ ++ L++ P +A+AHG+
Sbjct: 824 VLTYVGAQEDKQVTAAIRRELLREGQVFYIHNRVEDIDRVAAHLRELVPDARVAVAHGKM 883
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
QLE + F + +L+CT IVE+GLDI NANT+IV++ +FGL+QL+QLRGRVGR
Sbjct: 884 NEAQLERVIVDFWEREFDVLVCTTIVETGLDIANANTLIVENADKFGLSQLHQLRGRVGR 943
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ + A+AY Y L++ A +RL L +LG G Q+A KD+ IRG G + G +Q+G
Sbjct: 944 SSERAYAYFLYNATKPLTETAHDRLTTLATNTDLGAGMQVAMKDLEIRGAGNLLGGEQSG 1003
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ VG DL+ M+ E+++ + P K +++++ ++ LP +YI +E +
Sbjct: 1004 HIAGVGFDLYVRMVGEAVAAFRGES--TAPEKEIRVELPVDAHLPHDYIGSERLRLEAYS 1061
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 575
+ +D + Q L +YG+ P +++LL R A GI +I A GKM+
Sbjct: 1062 KLSAVRSED--EIAQIRAELTDRYGEPPAPVQLLLDVAAFRIAARAAGIDEIQAQGKMI 1118
>gi|403253617|ref|ZP_10919918.1| transcription-repair coupling factor [Thermotoga sp. EMP]
gi|402811151|gb|EJX25639.1| transcription-repair coupling factor [Thermotoga sp. EMP]
Length = 893
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/548 (41%), Positives = 358/548 (65%), Gaps = 14/548 (2%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE-FAAQFPYEPTPDQKKAF 98
W++ K + I+K + +L+ELY+ R + + P +P + E FA FPY TPDQ+++
Sbjct: 321 WKQTLKKVREDIEKKIKELVELYMKRQEAQGLSLPGDPELEEKFAESFPYIETPDQQQSI 380
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+V DL E PMDRL+CGD G GKTEVALRA F V++GKQ VL PT VLA+QH++
Sbjct: 381 EEVLSDLAS-EKPMDRLLCGDAGVGKTEVALRAAFRAVASGKQVAVLVPTTVLARQHYEN 439
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
ER + +KV LL ++ EK+E ++ +K G ++II+GTHSLL R+ +++LGL++
Sbjct: 440 FKERMEPF-GVKVELLDSSRTAREKKEIIEKLKKGEIDIIIGTHSLLNERIEFSDLGLVI 498
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQ+FGV+QKE+ ++SV+VLTLSATPIPRTL++AL+G +D S+I++PPP R P+
Sbjct: 499 IDEEQKFGVEQKERFKKLRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVY 558
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
+++ +S + V A+ E++RGGQV YV R++ L E + L++ FP ++IA+AHG+
Sbjct: 559 VYVAEYSDDLVKGAVIREINRGGQVIYVHNRVEELPEVFEKLKRMFPELEIAVAHGKMSR 618
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+ +E + +F +G I +L+CT I+E+G+DI NANT+IV D Q++GL+QLYQLRGRVGR+D
Sbjct: 619 KTMERIVHEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAQRYGLSQLYQLRGRVGRSD 678
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A AY YP + S ALERL L+ G G Q++ KDM +RG G + G +Q G+V
Sbjct: 679 RRAFAYFLYPKGTPRS--ALERLKVLKSYTGFGSGLQISLKDMELRGVGDVLGLEQHGNV 736
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR---LPSEYINHLENPMEMV 515
+VG+ L+ E+L E++++ E + SV ++I P +P +Y+ +NP+E +
Sbjct: 737 VSVGLKLYNEILKETITRFKERRIEK--KHSVNVEIENPPGRFFIPEDYV---QNPVERL 791
Query: 516 NEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM 574
+ A+ D L + E ++ ++G+ P +++L+ +R A+ +GI KI M
Sbjct: 792 RLYRRLASSLDEEDLEEILEEMKDRFGEPPEEVKLLVDYFRLRVRASKLGIKKIRFDHSM 851
Query: 575 VGMKTNMN 582
V + + N
Sbjct: 852 VEIFPSRN 859
>gi|229100846|ref|ZP_04231656.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-28]
gi|228682572|gb|EEL36639.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-28]
Length = 621
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 332/527 (62%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 18 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETDDQLRSI 77
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 78 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 136
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E L +K G ++I++GTH +L V Y +LGLL+
Sbjct: 137 IRERFQDYP-INIGLLSRFRTRKQQNETLKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 195
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 196 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 255
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 256 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 315
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 316 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 375
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 376 RVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 435
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 436 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 489
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 490 MYKQFRGVST--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 534
>gi|139438721|ref|ZP_01772205.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC
25986]
gi|133775801|gb|EBA39621.1| transcription-repair coupling factor [Collinsella aerofaciens ATCC
25986]
Length = 1210
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/562 (39%), Positives = 353/562 (62%), Gaps = 10/562 (1%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR--LKQKRPPYPKNPAIAEFAA 84
+PR L++L +T W R K + +K+ DL++LY R + P P P E
Sbjct: 594 KPR-LTRL-NTADWTRATNKARKNAKKLAFDLVDLYTRRSSITGIACP-PDTPEQIEMEE 650
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
FPY+ T DQ +A D++ D+ E PMDRL+CGDVGFGKTEVALRA F V +G+Q MV
Sbjct: 651 SFPYDETRDQLEAIADIKADM-EAPKPMDRLLCGDVGFGKTEVALRAAFKCVDSGRQVMV 709
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
L PT +LA+QH++ ERF+ + ++V +LSRF++ A+++ L G +++++GTH L
Sbjct: 710 LCPTTILAQQHYETFFERFAPF-GLEVEVLSRFRTPAQQKRALKAFAEGTIDVLIGTHRL 768
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264
L + V NLG++++DEEQRFGV+ KE++ + + +DVLTLSATPIPRT+ +A +G RD
Sbjct: 769 LSADVNPKNLGMVIIDEEQRFGVQHKEQLKNLREQIDVLTLSATPIPRTMQMATSGVRDM 828
Query: 265 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 324
SLI+TPP R P+ H+ + + V +AI+ E+ RGGQV+YV R+K +++ + + +A
Sbjct: 829 SLITTPPTGRRPVIVHVGEYDPDVVSAAIRLEVGRGGQVYYVSNRVKTIDDAVARVHEAA 888
Query: 325 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 384
P + +AHG+ R++E+ M +FA I +LI T IVESG+D ANT+I++D Q+ GL
Sbjct: 889 PEARVGVAHGKMSPREVEDVMIEFATKKIDVLIATTIVESGIDNATANTLIIEDSQRLGL 948
Query: 385 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIR 444
AQLYQL+GRVGR+ +A+AY +P + L+++A RL AL E ++LG G ++A +D+ IR
Sbjct: 949 AQLYQLKGRVGRSATQAYAYFMFPGELPLTEEATARLTALSEFQDLGSGMRIAMRDLEIR 1008
Query: 445 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEY 504
G G++ G +Q G++ +VG DLF +ML +++++ V SV I++ + L EY
Sbjct: 1009 GAGSLMGAEQHGNLSSVGFDLFTQMLGQAVAEARGDDDAGVEAASVGINLPADYFLSEEY 1068
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
+ ++ + + + AA +D+ + + E +G+ P + L + +R +G
Sbjct: 1069 LPAVDQRVLVYRKL--AAAEDLESIDEVQEETEAAHGELPLAGLNLFNRARIRIRGERLG 1126
Query: 565 ITKIYAS-GKMVGMKTNMNKKV 585
+ + S G++ + ++ KKV
Sbjct: 1127 LESVTLSGGRITFLGVDVPKKV 1148
>gi|452077537|gb|AGF93493.1| transcription-repair coupling factor [uncultured organism]
Length = 1039
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/445 (45%), Positives = 297/445 (66%), Gaps = 4/445 (0%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQ 85
+P L L ++ W++ K + K ++++M + L+ELY R + + ++ EF
Sbjct: 435 KPPKLYSLG-SSEWKKVKQRVKNSVKEMAIGLLELYAERETVEGYAFSEDTVWQREFEDS 493
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
FPYE TPDQ A +V++D+ E TPMDRL+CGDVG+GKTEVA+RA F GKQ VL
Sbjct: 494 FPYEETPDQMNAIEEVKKDM-EDPTPMDRLLCGDVGYGKTEVAIRAAFKAAMDGKQTAVL 552
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA+QH++ SER KYP I V ++SRF++K E+EE L + G ++I++GTH LL
Sbjct: 553 VPTTILAQQHYNTFSERIEKYP-INVEMISRFKTKREQEEILKKLAKGEVDIVIGTHRLL 611
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
V++++LGLL++DEEQRFGV KEK+ + K SVDVLTL+ATPIPRTL++AL G RD S
Sbjct: 612 SEDVIFSDLGLLIIDEEQRFGVSHKEKLKNIKSSVDVLTLTATPIPRTLHMALVGVRDMS 671
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I TPP R PI+T++ F++E V I+ E+ R GQV++V R++ +++ D +++ P
Sbjct: 672 VIETPPENRYPIRTYIREFNEELVRETIRREMGRNGQVYFVHNRVEDIDKKADMVRRLVP 731
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
+A+AHGQ +LE M F +L+CT I+E+GLDI N NTII+ GLA
Sbjct: 732 EARVAVAHGQMNENRLERLMYNFYNNEYDVLVCTTIIENGLDIPNVNTIIINRADLMGLA 791
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
QLYQLRGRVGR+ + A+AYL Y +L + A +RL A++E LG GF++A +D+ IRG
Sbjct: 792 QLYQLRGRVGRSSRVAYAYLLYESDRVLPEVAEKRLKAIKEFTNLGSGFKIAMRDLEIRG 851
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEML 470
G + G +Q G + ++G L+ ++L
Sbjct: 852 AGNLLGAEQHGHIASIGFSLYCKLL 876
>gi|410461741|ref|ZP_11315386.1| transcription-repair coupling factor [Bacillus azotoformans LMG 9581]
gi|409925445|gb|EKN62658.1| transcription-repair coupling factor [Bacillus azotoformans LMG 9581]
Length = 1172
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 218/552 (39%), Positives = 346/552 (62%), Gaps = 20/552 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
+ +E K P+ + KL T W++ KTK + ++Q + DL++LY R K + K+
Sbjct: 555 YVASEGKEPK-IYKLGGTD-WKKVKTKVQKSVQNIADDLIKLYAEREASKGYAFAKDGEE 612
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E + F Y+ T DQ + ++++D+ E E PMDRL+CGDVG+GKTEVA+RAIF +
Sbjct: 613 QRELESSFSYQETEDQLRCIEEIKKDM-ESERPMDRLLCGDVGYGKTEVAIRAIFKAIMD 671
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ERF +P ++VGLLSRF++K ++ E + IK G ++++
Sbjct: 672 GKQVAFLVPTTILAQQHYETIRERFQGFP-VEVGLLSRFRTKKQQTETIKGIKAGTIDVV 730
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +L +VY +LGLLV+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++
Sbjct: 731 IGTHRILSKDIVYRDLGLLVIDEEQRFGVTHKEKIKKMKANVDVLTLTATPIPRTLHMSM 790
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T+++ ++ V AI+ EL R GQ++++ R++ +E +
Sbjct: 791 LGVRDLSVIETPPENRFPIQTYVAEYNPGLVREAIERELARDGQIYFLYNRVEEIERKAE 850
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+ P + AHGQ +LE + F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 851 EISMLVPDARVTYAHGQMNENELESVILSFLEGEFDVLVSTTIIETGVDIPNVNTLIVYD 910
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A
Sbjct: 911 ADKMGLSQLYQLRGRVGRSNRVAYAYFTYQKDKVLTEVAEKRLQAIKEFTELGSGFKIAM 970
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP----YKSVQIDI 494
+D+ IRG G + G +Q G + VG DL+ +ML E+ +DE +P ++ V+I++
Sbjct: 971 RDLSIRGAGNLLGAEQHGFIDTVGFDLYSQMLKEA---IDERR--GMPKEEIFRDVEINL 1025
Query: 495 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK-- 552
I+ +PS+YI + ++M A + + + + ++G+ P +E L +
Sbjct: 1026 EIDAYIPSDYIQDGKQKIDMYKRFR--ALDTLEDVADLQDEMIDRFGEFPKEVEYLFQIS 1083
Query: 553 --KLYVRRMAAD 562
K+Y ++ D
Sbjct: 1084 RMKVYAKKQKID 1095
>gi|220930453|ref|YP_002507362.1| transcription-repair coupling factor [Clostridium cellulolyticum H10]
gi|220000781|gb|ACL77382.1| transcription-repair coupling factor [Clostridium cellulolyticum H10]
Length = 1174
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 213/547 (38%), Positives = 352/547 (64%), Gaps = 8/547 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
+E K PR ++KL T W + K++ K ++Q++ +L++LY R K + ++ +
Sbjct: 562 SEGKTPR-VNKLG-GTEWAKTKSRVKESLQQLAAELIKLYAQRQSAKGHSFSEDTVWQRQ 619
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY+ T DQ K ++++D+ E E MDRL+CGDVG+GKTEVA+RA+F V GKQ
Sbjct: 620 FEELFPYQETDDQLKCIDEIKKDM-ESEGLMDRLLCGDVGYGKTEVAIRAVFKAVMDGKQ 678
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
LAPT +LA+Q ++ R + +P + V ++SRF++ AE+++ + +K G+ +I++GT
Sbjct: 679 VAYLAPTTILAQQLYENFKTRMNDFP-VTVDVMSRFRTPAEQKKIVKSVKAGNTDILIGT 737
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V + +LGLLV+DEEQRFGV KEK+ + K +VDVLTL+ATPIPRTL+++L G
Sbjct: 738 HRLLQKDVEFKDLGLLVIDEEQRFGVTHKEKLKTLKPNVDVLTLTATPIPRTLHMSLVGI 797
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S++ PP ER P++T++ ++ E + I E+ R GQVFY+ R++G++ ++
Sbjct: 798 RDISVLEDPPEERYPVQTYVMEYNMELIRDGIIREMARDGQVFYMYNRVRGIDLKAQEIR 857
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P +A+AHG+ ++LE+ M F G +L+CT I+ESGLD+ N NTI+V+D +
Sbjct: 858 KMIPDARVAVAHGKMNEKELEDVMYGFINGEYDVLVCTTIIESGLDMPNVNTIVVEDADR 917
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQ+RGRVGR+++ A+AY+ Y +LS+ A +RL A++E E G GF++A +D+
Sbjct: 918 MGLSQLYQIRGRVGRSNRLAYAYITYKKDKVLSEVAEKRLQAIKEFTEFGSGFRIAMRDL 977
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G +Q G + VG +++ ++L E++ ++ V + + + +D+N+N +
Sbjct: 978 EIRGAGNLLGSEQHGHLETVGYEMYCKLLDEAVQELSGKEVRTTD-EEMAVDLNVNAYID 1036
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
+EYI+ E ++M + AA Q+ ++ + L +YG P +E L+ Y++ +A
Sbjct: 1037 NEYISSEEQKIDMYKKI--AAIQNENDVIDLKDELIDRYGDIPEEVENLMDIAYIKALAV 1094
Query: 562 DIGITKI 568
+ G I
Sbjct: 1095 ECGFIGI 1101
>gi|455789008|gb|EMF40949.1| transcription-repair coupling factor [Leptospira interrogans
serovar Lora str. TE 1992]
Length = 878
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/559 (41%), Positives = 358/559 (64%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 271 TESPR-LDSLGKST-WKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 328
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 329 AEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 387
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++VGTH+
Sbjct: 388 MLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHA 446
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 447 ILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRE 506
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++L +
Sbjct: 507 LSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNYLSKL 566
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 567 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 626
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 627 LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 686
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N +P
Sbjct: 687 RGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNFFIPE 743
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G+ P + ILL+K +R +A
Sbjct: 744 TYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--IRTLA 799
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + MK+
Sbjct: 800 SNLGFEFVTEMKDEIKMKS 818
>gi|340620888|ref|YP_004739339.1| ATP-dependent helicase mfd [Capnocytophaga canimorsus Cc5]
gi|339901153|gb|AEK22232.1| ATP-dependent helicase mfd [Capnocytophaga canimorsus Cc5]
Length = 1109
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/563 (39%), Positives = 341/563 (60%), Gaps = 20/563 (3%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQ 85
+P + KL + AW+ K K K ++++ +L++LY R + + + + E A
Sbjct: 484 KPPKIYKLG-SGAWKALKQKTKARVKEIAFNLIQLYAKRKESSGFAFAHDSYLQNELEAS 542
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V GKQ VL
Sbjct: 543 FLYEDTPDQSKATAEVKADM-ESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVL 601
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA QH+ S R +P +++ L+RF++ EK+ L+ + G L+II+GTH ++
Sbjct: 602 VPTTILAFQHYQTFSSRMKDFP-VRIDYLNRFRTAKEKKNILEELAKGSLDIIIGTHQIV 660
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L RD S
Sbjct: 661 NESVKYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLS 720
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+TPPP R PI + + F++E + A+ YE+ RGGQVF++ R++ + E LQ+ P
Sbjct: 721 VINTPPPNRYPIDSQVIHFNEEIIRDAVAYEIQRGGQVFFINNRVENIREVAGMLQRLVP 780
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
IA+ HGQ ++LEETM F G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 781 DAKIAVGHGQMDGKKLEETMLAFMDGTYDVLVATTIIESGLDVPNANTIFINNAHNFGLS 840
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG GF +A KD+ IRG
Sbjct: 841 DLHQMRGRVGRSNKKAFCYFITPPFVAMSDDARKRIQAIAQFSDLGSGFNIAMKDLEIRG 900
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS----------VQIDIN 495
G + G +Q+G + +G + + ++L E++ ++ E+ S Y++ QID +
Sbjct: 901 AGDLLGGEQSGFINEIGFETYQKILQEAIVELKENE-FSELYQTKEEDKSYLNDTQIDSD 959
Query: 496 INPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
P Y+N + + + NE + +E D L+ + ++L ++G+ P LL +
Sbjct: 960 FELLFPDTYVNRVAERLNLYNELSNITSEAD---LLTYEKNLIDRFGQLPPQAVDLLNSV 1016
Query: 555 YVRRMAADIGITK-IYASGKMVG 576
++ A +GI K + +GKM G
Sbjct: 1017 RLKWFATKMGIEKLVMKNGKMTG 1039
>gi|456989139|gb|EMG23989.1| transcription-repair coupling factor [Leptospira interrogans serovar
Copenhageni str. LT2050]
Length = 1099
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/559 (41%), Positives = 358/559 (64%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 492 TESPR-LDSLGKST-WKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 549
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 550 AEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 608
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++VGTH+
Sbjct: 609 MLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHA 667
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 668 ILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRE 727
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++L +
Sbjct: 728 LSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNYLSKL 787
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 788 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 847
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 848 LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 907
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N +P
Sbjct: 908 RGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNFFIPE 964
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G+ P + ILL+K +R +A
Sbjct: 965 TYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--IRTLA 1020
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + MK+
Sbjct: 1021 SNLGFEFVTEMKDEIKMKS 1039
>gi|399155479|ref|ZP_10755546.1| transcription-repair coupling factor [SAR324 cluster bacterium SCGC
AAA001-C10]
Length = 1181
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/541 (40%), Positives = 342/541 (63%), Gaps = 10/541 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYE 89
LSKL + AW++ +TK A+ + +L ++Y R +K + P + + EF +FP+E
Sbjct: 580 LSKLGEK-AWKKTRTKVARAVDDIAEELAQIYAERKARKGFAFAPDDHEMGEFELRFPFE 638
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ++ V+ D+ E + PMDRL+CGDVGFGKTE+A+R F KQ +L PT
Sbjct: 639 ETPDQEEVIRSVKDDM-ETKLPMDRLVCGDVGFGKTEIAMRGSFKAAQQEKQVAILVPTT 697
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH++ +RF P I + ++SRF++ AE++ L + G ++II+GTH LL + V
Sbjct: 698 ILAQQHYETFVKRFEDTPFI-IEVISRFKTDAEQKIILKRLLEGKIDIIIGTHRLLSTDV 756
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+N+LGLLVVDEEQRFGVK KEKI F+ +VDVLTLSATPIPRTL+++L G RD SL++T
Sbjct: 757 KFNDLGLLVVDEEQRFGVKHKEKIKRFRAAVDVLTLSATPIPRTLHMSLMGIRDLSLVNT 816
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP +R I+T L + + A+ E+ RGGQVF V R++ + E +L+ P + I
Sbjct: 817 PPADRRAIRTRLLPVNDYIIQEAVSREIRRGGQVFVVHNRVETIYEYGRYLESILPNIRI 876
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
AIAHGQ + LE+ M + +G +L+ T I+ESGLDI ANTII+ + Q FGL+QLYQ
Sbjct: 877 AIAHGQMREQNLEKVMLDYIEGRFDVLLSTTIIESGLDIPRANTIIINNAQNFGLSQLYQ 936
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR++ +A+AYL P + +LS A ERL L++ +LG GF++A +D+ IRG G +
Sbjct: 937 LRGRVGRSNVQAYAYLLVPAEKILSGVAHERLQVLQDLNDLGAGFKVASRDLEIRGAGNL 996
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDIN-INPRLPSEYINHL 508
G +Q+G + +VG++L+ +M+ ++ K+ ++ P + +Q+ ++ I +P YI+
Sbjct: 997 LGSEQSGQIASVGLELYTQMVDRAVKKLLQNESGLAP-EDIQVRLDHIEQSIPESYIHSS 1055
Query: 509 ENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITK 567
+ + + ++++W +F + ++G P S+ + + VR G+ K
Sbjct: 1056 SHRLSLYKALGTLPTKEELW---EFRNGVEDRFGILPESVLNIFRNAEVRLWGQLHGVEK 1112
Query: 568 I 568
I
Sbjct: 1113 I 1113
>gi|189218310|ref|YP_001938952.1| transcription-repair coupling factor mfd (superfamily II helicase)
[Methylacidiphilum infernorum V4]
gi|189185168|gb|ACD82353.1| Transcription-repair coupling factor mfd (superfamily II helicase)
[Methylacidiphilum infernorum V4]
Length = 1060
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/541 (42%), Positives = 337/541 (62%), Gaps = 20/541 (3%)
Query: 43 RKTKGKVAIQKMVVDLMELYLHRLKQKRP-----PYPKNPAI-AEFAAQFPYEPTPDQKK 96
R K K A QK V DL E L ++ +R +P++ EF F YE TPDQ K
Sbjct: 480 RWIKAKRAAQKAVTDLAEKLL-KINAEREVLEGFAFPQDDQWQKEFEEAFIYEETPDQLK 538
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A + ++D+ E + PMDRLICGDVGFGKTEVA+RAIF V GKQA++L PT VLAKQHF
Sbjct: 539 AIEETKKDM-ESKRPMDRLICGDVGFGKTEVAIRAIFKAVMGGKQAVLLTPTTVLAKQHF 597
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ + ERF+ YP I LL RF +E++E L +K G ++++VGTH LL + V + +LGL
Sbjct: 598 NTLRERFADYP-IHTALLCRFVKNSEEKEILAGLKEGTVDVVVGTHRLLSADVEFKDLGL 656
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
+V+DEEQRFGV QKEK +DVL LSATPIPRTLYLA+ G RD SLI TPPP R P
Sbjct: 657 IVIDEEQRFGVLQKEKWKEKFRFIDVLLLSATPIPRTLYLAMAGARDMSLIETPPPNRFP 716
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
I+T + + + + AI+ EL+RGGQV+++ RI+ +E+ L+ P + I I HG+
Sbjct: 717 IETIVGPYDERVIRQAIERELNRGGQVYFLHNRIRTIEKVASRLKSLLPSIKIDIGHGRM 776
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LEE ME+F +G I +L+ T+I+E+GLDI NANTII+ FGLA LYQLRGRVGR
Sbjct: 777 KKHELEEVMERFVEGKIDVLLATSIIENGLDIPNANTIIIDRADLFGLADLYQLRGRVGR 836
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
++++A+AYL P + A +R+ A++E +LG GFQ+A +D+ IRG G + G Q+G
Sbjct: 837 SNQKAYAYLLLPRDLFIQSDAKKRIKAMQEHSQLGTGFQIALRDLEIRGAGNLLGTSQSG 896
Query: 457 DVGNVGVDLFFEMLFESLSKVDEH-------CVISVPYKSVQIDININ--PRLPSEYINH 507
+ ++G +L+ ++L +++ K+ C +S+ + + + +P Y+
Sbjct: 897 HIASIGFELYCKLLKKAIQKIQGKETEPLIDCRLSLDFLLPEPGGGRHALAYIPFSYMER 956
Query: 508 LENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITK 567
+ + + +A++ + L + +S + +YG P +E L + +R +AA GI +
Sbjct: 957 RQERLHAYRQLAEASQPE--ELEEIKKSWKDRYGPWPEPVEHLFSLVEIRIIAARKGIER 1014
Query: 568 I 568
+
Sbjct: 1015 V 1015
>gi|456825200|gb|EMF73596.1| transcription-repair coupling factor [Leptospira interrogans serovar
Canicola str. LT1962]
Length = 1099
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/559 (41%), Positives = 358/559 (64%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 492 TESPR-LDSLGKST-WKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 549
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 550 AEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 608
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++VGTH+
Sbjct: 609 MLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHA 667
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 668 ILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRE 727
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++L +
Sbjct: 728 LSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNYLSKL 787
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 788 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 847
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 848 LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 907
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N +P
Sbjct: 908 RGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNFFIPE 964
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G+ P + ILL+K +R +A
Sbjct: 965 TYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--IRTLA 1020
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + MK+
Sbjct: 1021 SNLGFEFVTEMKDEIKMKS 1039
>gi|152973901|ref|YP_001373418.1| transcription-repair coupling factor [Bacillus cytotoxicus NVH
391-98]
gi|152022653|gb|ABS20423.1| transcription-repair coupling factor [Bacillus cytotoxicus NVH
391-98]
Length = 1176
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/522 (39%), Positives = 329/522 (63%), Gaps = 6/522 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K + P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAFTPDTAEQREFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERSRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ E+ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKEQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALIREAIERELARGGQIYFLYNRVEDIERKADEISMLVPEARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQYDVLVSTTIIETGVDIPNVNTLIVYDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML +++ + I V+ID+ ++ LP YI+ + + M +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRKGKQGIENTI-DVEIDLEVDAYLPDSYISDSKQKIMMYKQF 1049
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
+ + + + E + ++G P + LL+ ++ +A
Sbjct: 1050 RGVS--TLEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|424779782|ref|ZP_18206674.1| Transcription-repair coupling factor [Catellicoccus marimammalium
M35/04/3]
gi|422843532|gb|EKU27962.1| Transcription-repair coupling factor [Catellicoccus marimammalium
M35/04/3]
Length = 1155
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/546 (40%), Positives = 344/546 (63%), Gaps = 9/546 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K P+ L++L D W + K K + ++ M +L+ELY R +K + K+ + +F
Sbjct: 540 ENKTPK-LNRL-DNKTWHKTKHKVERQVEDMADELIELYAQRQLEKGFAFSKDDEVQRKF 597
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
QFPY T DQ ++ +++ D+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 598 EDQFPYAETEDQLRSTREIKADM-EKEQPMDRLLVGDVGYGKTEVALRAAFKAIRDHKQV 656
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QH+ + +R +P KVG+L+RF+SK E++E L+ + G ++IIVGTH
Sbjct: 657 AFLVPTTILAEQHYTTIMKRLRDFP-YKVGILNRFKSKKEQKEILNELAEGTIDIIVGTH 715
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V++++LGL+++DEEQRFGV+ KE++ K VDVLTL+ATPIPRTL++++ G R
Sbjct: 716 RLLSKDVIFHDLGLIIIDEEQRFGVRHKERLKQLKTKVDVLTLTATPIPRTLHMSMMGVR 775
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S++ TPP R P++T++ ++ E V AI+ E+ RGGQVFY+ +++ + E + LQQ
Sbjct: 776 DLSVLETPPMNRYPVQTYVLEYNLEVVRDAIEREVARGGQVFYLFNQVETMPEKLQELQQ 835
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P + AHGQ +LE + +F G +LI T I+E+G+D+ N NTIIV ++
Sbjct: 836 WMPNLRFLCAHGQMQEHELENVLFEFLSGNADVLITTTIIETGVDMPNVNTIIVDGAEKM 895
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQL+GRVGR+ + AHAY YP LLS ++ ERL+AL E +LG GF++A +D+
Sbjct: 896 GLSQLYQLKGRVGRSSRLAHAYFMYPPFKLLSGESEERLSALREFTQLGAGFKIAMRDLS 955
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G I G +Q G + VG DL+ E+L +++++ + + V Y +I + +P+
Sbjct: 956 IRGAGDILGSKQHGFINEVGFDLYNELLQQAVAR--KQGKVEVQYPDTKIHCVCDAYIPN 1013
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
+YI +EM + ++ L + T ++G+ P +++ LL + ++ A+
Sbjct: 1014 DYIQSPALKVEMYRRLRCLSSKE--ELAEITMDFIDRFGEYPKAVQNLLDMVALKWEASH 1071
Query: 563 IGITKI 568
+ KI
Sbjct: 1072 AYVEKI 1077
>gi|392988402|ref|YP_006486995.1| transcription-repair coupling factor [Enterococcus hirae ATCC 9790]
gi|392335822|gb|AFM70104.1| transcription-repair coupling factor [Enterococcus hirae ATCC 9790]
Length = 1173
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/494 (42%), Positives = 326/494 (65%), Gaps = 8/494 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E+K PR ++KL ++ W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SESKAPR-INKLG-SSEWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDGYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F V KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAVKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + VGLLSRF++K +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNVGLLSRFRTKKQQKETIEQLRTGQIDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL+VDEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIVDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFES-LSKVDEHCVISVPYKSVQIDININPRL 500
IRG G + G QQ G + VG D++ +ML ++ L K ++ V +V+ID+ ++ L
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSDAVLRKQGKNN--QVEKTAVEIDLGVDAYL 1029
Query: 501 PSEYINHLENPMEM 514
P EY++ +E+
Sbjct: 1030 PEEYVSDQRQKIEI 1043
>gi|424842425|ref|ZP_18267050.1| transcription-repair coupling factor Mfd [Saprospira grandis DSM
2844]
gi|395320623|gb|EJF53544.1| transcription-repair coupling factor Mfd [Saprospira grandis DSM
2844]
Length = 1122
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 227/561 (40%), Positives = 349/561 (62%), Gaps = 22/561 (3%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQ 85
+P ++ KL + AW K K K I+ + DL++LY R + +P + + E A
Sbjct: 501 KPPSVHKLG-SNAWANTKKKTKKKIKALAFDLIKLYAKRKSTQGILFPPDGYLQNELEAS 559
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ KA V+ D+ + PMDRLICGDVGFGKTE+A+RA F V AGKQ +L
Sbjct: 560 FIYEDTPDQAKATEAVKEDMM-KPYPMDRLICGDVGFGKTEIAVRAAFKAVVAGKQVAIL 618
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA QH +R ++ D++V ++RF++ EK+E + +K G ++I++GTH++L
Sbjct: 619 VPTTILALQHAQTFRKRLGQF-DVQVEYINRFRTTKEKKEIYERLKAGKIDILIGTHAIL 677
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
+V + +LGLL++DEEQ+FGV KEK+ + K++VD LTL+ATPIPRTL +L RD S
Sbjct: 678 NKKVQFADLGLLIIDEEQKFGVASKEKLRNIKVNVDTLTLTATPIPRTLQFSLMAARDLS 737
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+TPPP R PI T L F+ E + AI+ E+ RGGQVF++ R+K LE+ L+Q P
Sbjct: 738 VINTPPPNRQPIHTELRTFNAELIQEAIEQEVSRGGQVFFIHNRVKSLEDMAAMLRQMMP 797
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
+D+A+AHGQ QLE+ + F QG ++L+CTNI+E+GLDI NANTII+ + FGL+
Sbjct: 798 NLDVAVAHGQMEPAQLEKRLMNFIQGYNEVLVCTNIIETGLDIANANTIIINNAHHFGLS 857
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+QLRGRVGR++K+A+ YL P S+LS + +RL LE+ ELG G +A +D+ IRG
Sbjct: 858 DLHQLRGRVGRSNKKAYCYLLAPPLSVLSADSRKRLQTLEQFAELGSGIHIAMRDLDIRG 917
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV----------DEHCVISVPYKSVQIDIN 495
G I G +Q+G + N+G + + ++L E++ ++ +E + V I+++
Sbjct: 918 AGNILGGEQSGFIVNMGYETYQKILNETIQELKQGEYKELFKEEMEKKREFVQDVIIELD 977
Query: 496 INPRLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 552
+PS+Y+ + + + ++E E A+ + F+E + ++G P + L +
Sbjct: 978 EEMLIPSDYVPIISERLALYQKMDELENEAD-----IKSFSEKMIDRFGPLPEQVNQLFE 1032
Query: 553 KLYVRRMAADIGITKIYASGK 573
L +R MA +G ++ GK
Sbjct: 1033 ALRLRWMARSLGFERLLFKGK 1053
>gi|366054154|ref|ZP_09451876.1| transcription-repair coupling factor [Lactobacillus suebicus KCTC
3549]
Length = 1179
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/537 (41%), Positives = 335/537 (62%), Gaps = 11/537 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE- 81
+E+K PR ++KL T W + K K I+ + DL+ELY R +K P+P++ + +
Sbjct: 555 SESKTPR-INKLG-GTEWAKTKRKVADKIEDIADDLIELYAQRKAEKGYPFPRDDSYQQQ 612
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E E PMDRL+ GDVGFGKTEVALRA F V GKQ
Sbjct: 613 FEDDFPYNETRDQLRSSEEIKRDM-ETEKPMDRLLVGDVGFGKTEVALRAAFKAVEDGKQ 671
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QHFD + RF YP + VGL+SRF++ E + + +K G +I+VGT
Sbjct: 672 VAFLVPTTILAQQHFDTIETRFEGYP-VTVGLMSRFKTTKELRQTENELKDGQCDIVVGT 730
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V + +LGLL++DEEQRFGVK KE++ K SVDVLTL+ATPIPRTL +++ G
Sbjct: 731 HRLLSKDVKFKDLGLLIIDEEQRFGVKHKERLKQMKQSVDVLTLTATPIPRTLNMSMLGV 790
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + I E+ RGGQV+Y+ R+ +E+ + +Q
Sbjct: 791 RDLSVIETPPAGRFPIQTYVMEQNAGALRDGIMREMQRGGQVYYLHNRVMDIEKTVAQVQ 850
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + HG+ QLE + F +G +L+ T+I+E+G+DI N NT+ V++ +
Sbjct: 851 SLVPEARVGYIHGRMTEAQLEGVLYDFIRGEYDVLVTTSIIETGVDIPNVNTLFVENADR 910
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GLAQLYQ+RGR+GR+D+ A+AY Y +L++ + +RLAA+ + ELG GF++A +D+
Sbjct: 911 MGLAQLYQIRGRIGRSDRVAYAYFMYQQDKVLNEVSEKRLAAIRDFTELGSGFKIAMRDL 970
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G+QQ G + +VG DL+ +ML E+++K V + +I++ + LP
Sbjct: 971 SIRGAGNLLGKQQHGFIDSVGYDLYSQMLSEAVAKKQGKKVAA--KSDAEIELGLEAYLP 1028
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRR--QYGKEPYS-MEILLKKLY 555
YI+ +E+ + + + D MQ ++ + R +YG E + +EI K+Y
Sbjct: 1029 DSYIDDQRQKIELYKQIRQVQDDDQLMEMQ-SDLIDRFGEYGDEVNNLLEIARLKMY 1084
>gi|392969139|ref|ZP_10334555.1| transcription-repair coupling factor [Fibrisoma limi BUZ 3]
gi|387843501|emb|CCH56609.1| transcription-repair coupling factor [Fibrisoma limi BUZ 3]
Length = 1116
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 213/554 (38%), Positives = 346/554 (62%), Gaps = 20/554 (3%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQF 86
P T+SKL + WE++K+K + ++ + +L+ LY R Y ++ + AE + F
Sbjct: 500 PPTMSKLG-SQEWEQKKSKIRKQVKDIARELIALYAKRRNAPGFAYSRDSFLQAELESSF 558
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
YE TPDQ KA DV+ D+ ER PMDRL+CGDVGFGKTE+A+RA F V+ KQ VL
Sbjct: 559 LYEDTPDQAKATNDVKDDM-ERPHPMDRLVCGDVGFGKTEIAIRAAFKAVTDNKQVAVLV 617
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA QH++ ER + +P +++ ++RF+S A+ + L + G + I++GTH ++
Sbjct: 618 PTTILAMQHYNTFKERMADFP-VRIEYINRFRSTAQIRDTLKGVTSGEVGILIGTHRIVN 676
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
V + +LGLL++DEEQ+FGVK K+++ ++ VDVLTL+ATPIPRTL+ +L G RD S+
Sbjct: 677 KDVKFKDLGLLIIDEEQKFGVKTKDRLKEMRVEVDVLTLTATPIPRTLHFSLMGARDLSV 736
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPPP R P+ T + AF++ V AI +E+ RGGQVF+V R+ +E + + + P
Sbjct: 737 IATPPPNRQPVTTEVHAFNEAIVRDAISFEIRRGGQVFFVHNRVNDIESIGNLIMRLVPE 796
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
I +AHGQ +LE M +F +G +L+ TNI+ESGLDI NANTII+ FGL+
Sbjct: 797 ARIGVAHGQMEGEKLERVMTRFIEGDYDVLVSTNIIESGLDIPNANTIIINQAHFFGLSD 856
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+Q+RGRVGR++++A YL P S+L+ A +RL LE+ +LG+GF++A +D+ IRG
Sbjct: 857 LHQMRGRVGRSNRKAFCYLLTPPPSVLTADARKRLQTLEDFSDLGEGFKIAMRDLDIRGA 916
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEH------------CVISVPYKSVQIDI 494
G + G +Q+G + ++G +++ ++L E++ ++ E+ S+P QI+
Sbjct: 917 GNLLGAEQSGFINDLGFEMYHKVLDEAVQELRENEFKDLFEPNVGDLKPSLP--DTQIET 974
Query: 495 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
++ +P +Y++++ + + + Q+ L F + ++ ++G P +E L+K +
Sbjct: 975 DLPVLIPEKYVSNISERLALYTRLDSI--QNNEELQAFRQEVQDRFGPMPEEVENLIKMV 1032
Query: 555 YVRRMAADIGITKI 568
VR A + + K+
Sbjct: 1033 NVRWKAERLYLEKL 1046
>gi|269215535|ref|ZP_06159389.1| transcription-repair coupling factor [Slackia exigua ATCC 700122]
gi|269131022|gb|EEZ62097.1| transcription-repair coupling factor [Slackia exigua ATCC 700122]
Length = 1150
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/475 (44%), Positives = 306/475 (64%), Gaps = 5/475 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E PR L++L +T+ W R +K + + +++ DL+++Y R Y P NP E
Sbjct: 544 EGSSPR-LTRL-NTSDWSRAMSKARASTKQLAFDLVDVYTRRSSVPGFRYSPDNPWQKEM 601
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY TPDQ A +V+ D+ + PMDRL+CGDVGFGKTEVALRA F V KQ
Sbjct: 602 EDAFPYAETPDQLSAIAEVKADM-QSSRPMDRLVCGDVGFGKTEVALRAAFKAVQDDKQV 660
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
MVL PT +LA+QH+ +RF + + V +LSRF++ AE++E L G ++++VGTH
Sbjct: 661 MVLCPTTILAQQHYATFKDRFEPF-HVSVEVLSRFRTPAEQKETLAGFADGTVDVLVGTH 719
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V +LGL+++DEEQRFGV KE++ + + +DVLTLSATPIPRTL ++L+G R
Sbjct: 720 RLLSRDVNPRDLGLVIIDEEQRFGVGHKEQLKNLREHIDVLTLSATPIPRTLQMSLSGVR 779
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D SLI TPP ER P++ H+ + + V AI+ E+ RGGQV+YV R++ +E+ +D ++
Sbjct: 780 DTSLILTPPDERRPVEVHVGEWDPDIVSDAIRREMQRGGQVYYVSNRVRTIEDALDHVRD 839
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
A P I AHG+ +LE ME FA GAI +L+ T I+ESG+D + NT++++D Q+
Sbjct: 840 AAPEARIGAAHGKMGKEELEAVMEDFAAGAIDVLVATTIIESGIDNPHTNTLVIEDSQRL 899
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GLAQ+YQL+GRVGR+ +A+AY +P + L+++A RL A++E RELG G Q+A +D+
Sbjct: 900 GLAQMYQLKGRVGRSSLQAYAYFMFPSEVPLTEEATARLQAIDEHRELGSGMQVAMRDLE 959
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 497
IRG G++ G +Q+G V VG DLF +ML + + E + DI +N
Sbjct: 960 IRGAGSLLGAEQSGSVSAVGFDLFAQMLATAFNDAREGRPLDDRAPQALSDITLN 1014
>gi|307609748|emb|CBW99260.1| transcription-repair coupling factor [Legionella pneumophila 130b]
Length = 1153
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 231/573 (40%), Positives = 342/573 (59%), Gaps = 9/573 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA-IAEFAAQFPYEPTPDQKKAF 98
W++ K K I + ++L++LY R Q Y N + +FA+ FP+ TPDQ +A
Sbjct: 553 WQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFNQSEYIKFASGFPFTETPDQLQAI 612
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+ +D+ + PMDRLICGDVGFGKTEVA+RA F V GKQ +LAPT +LA QHF+
Sbjct: 613 EQIIKDM-QSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAPTTLLAGQHFES 671
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+RF+++P + + LLSRF+S E E L ++ G ++I++GTH L + + + NLGLL+
Sbjct: 672 FRDRFAEFP-VNIELLSRFRSNKESEAVLAALQSGKVDIVIGTHKLFQNNISFKNLGLLI 730
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEE RFGVKQKE I S + VD+L+++ATPIPRTL +A+ G RD SLI+TPP +RL IK
Sbjct: 731 IDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIRDISLIATPPAKRLAIK 790
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + AI E+ RGGQVFY+ ++ +E L+ P I AHGQ
Sbjct: 791 TFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIERVCQDLEALVPEAKIQSAHGQMRE 850
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
RQLE M F +L+CT I+E+G+DI ANTII+ +FGLAQL+QLRGRVGR+
Sbjct: 851 RQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLHQLRGRVGRSH 910
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+A+AYL P++ LL+ A++RL A+ +LG GF LA D+ IRG G + GE+Q+G++
Sbjct: 911 HQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGELLGEEQSGNM 970
Query: 459 GNVGVDLFFEMLFESLS--KVDEHCVISVP-YKSVQIDININPRLPSEYINHLENPMEMV 515
+G +LF EML +++ K + +S P ++ +ID+ I+ +P +YI + N + M
Sbjct: 971 HAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEIDLRISAIIPEDYIGDIHNRLIMY 1030
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 575
A + L + L ++G P ++ L ++ AA +GI KI AS +
Sbjct: 1031 KRIANA--KTTQQLRELQIELIDRFGLLPQPVKHLFLITELKLKAAQLGIQKISASAQQG 1088
Query: 576 GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 608
+ + + + S+ +VH EG Q
Sbjct: 1089 KLDFSEKPSIDPGTLISLI-QVHAKRYQMEGPQ 1120
>gi|239906714|ref|YP_002953455.1| transcription-repair coupling factor [Desulfovibrio magneticus RS-1]
gi|239796580|dbj|BAH75569.1| transcription-repair coupling factor [Desulfovibrio magneticus RS-1]
Length = 1148
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/529 (40%), Positives = 322/529 (60%), Gaps = 7/529 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W+ + + K A++++ DL+E+Y +R K Y P N EF A F +E TPDQ++A
Sbjct: 554 WKSVRERAKKAVERIAADLVEMYAYRQVAKGYAYGPTNELYLEFEATFGFEETPDQERAI 613
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+V D+ ER PMDRL+CGDVGFGKTEVALRA F V GKQ +L PT VLA+QH+
Sbjct: 614 GEVLADM-ERPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVAMLCPTTVLAEQHYQN 672
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ R +P ++V +LSRF S ++ L+ + G ++I+VGTH +L S V N+GLL+
Sbjct: 673 FAARLEGFP-VRVEMLSRFVSPKRRKVVLEAVSRGEVDILVGTHRILSSDVAIPNIGLLI 731
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGVK KE++ +FK ++D LTL+ATPIPRTL L+L+G R S+I TPPP+R +
Sbjct: 732 LDEEQRFGVKHKERLKAFKKNIDALTLTATPIPRTLQLSLSGVRGLSVIETPPPDRKTVD 791
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T L + + ++ ELDR GQVF+V R++GLE+ +++ PG +A+AHGQ
Sbjct: 792 TALVERDEGFLREVLRRELDRQGQVFWVHNRVQGLEDVTAYVKTLAPGAKVAMAHGQMSE 851
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
LEE M F G IL+CT+I+ESGLD ANT+IV + FGL QLYQLRGRVGR+
Sbjct: 852 TALEEAMHGFWHGETDILVCTSIIESGLDFPRANTLIVDNAHMFGLGQLYQLRGRVGRSP 911
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
++A+AY P + + A +RL + + LG GFQ+A +D+ +RG G I GE Q+G +
Sbjct: 912 RQAYAYFVVPSIEKVPELARKRLRVILDMDYLGAGFQVAMEDLRLRGAGNILGEAQSGHI 971
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+G+D+F EML E + ++ + ++ + I R+P Y+ + + +
Sbjct: 972 ARIGLDMFLEMLAEEVRRLKGEPIKE--RIETELTLGIAARIPERYVPEASDRLRLYKAL 1029
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITK 567
A ++ L + +R ++G P ++ L +++ +G TK
Sbjct: 1030 STAKTEE--RLAEIAAEMRDRFGSPPAEVDNFRSVLAFKQVLGRLGATK 1076
>gi|297587541|ref|ZP_06946185.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516]
gi|297574230|gb|EFH92950.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516]
Length = 1168
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/545 (39%), Positives = 348/545 (63%), Gaps = 10/545 (1%)
Query: 26 KRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAA 84
K+P +L+KLS W + K K K ++ +M DL+ELY R K K + ++ EF
Sbjct: 564 KKP-SLNKLS-GNDWAKAKQKAKKSVDEMADDLVELYSKRAKLKGYQFSQDTEWQREFED 621
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
FPYE T Q ++ +++ D+ E + PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 622 SFPYEETDSQVRSIEEIKTDM-ESDRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVAF 680
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
L PT +LA+QHF+ + ERF YP I+V ++SRF S A +++ + ++ G ++++VGTH +
Sbjct: 681 LVPTTILAQQHFNTIKERFRDYP-IRVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHRI 739
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264
L + + +LGLLV+DEEQRFGV+ KEK+ S + +VDVLTLSATPIPRTL + LTG RD
Sbjct: 740 LSKNLKFKDLGLLVIDEEQRFGVRHKEKLKSMRENVDVLTLSATPIPRTLQMGLTGIRDM 799
Query: 265 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF-LQQA 323
SL+ PP +R PI T+++ ++ + AI ELDRGGQ+++V RI+ +++ M+F L++
Sbjct: 800 SLLEEPPEDRTPISTYVTEYNPSLIRDAIIRELDRGGQIYFVYNRIEDIDQ-MEFKLKEL 858
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P ++IAIAHG+ ++LE M F G +L+CT I+E+GLDIQN NT+I+ + + G
Sbjct: 859 VPELNIAIAHGRMNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKMG 918
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQL+GR+GR+D+ + AY Y + L++ + +RL A+++ E G GF++A +D+ +
Sbjct: 919 LSQLYQLKGRIGRSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRDLEL 978
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSE 503
RG G + GE Q G + +G DL+ ++L +++ + IS +V I+I +N +P +
Sbjct: 979 RGAGNLLGESQHGHIAKIGYDLYVKLLEQAVREAKGET-ISENKNTVTIEIKVNGYIPED 1037
Query: 504 YINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADI 563
YI+ E +++ + ++D + + + L ++G P + ++ ++ A +
Sbjct: 1038 YISENETKIDIYKKIASIQDEDDYS--EIIDELIDRFGDVPKPIVNIMDVSIIKAFCAKL 1095
Query: 564 GITKI 568
I I
Sbjct: 1096 SIESI 1100
>gi|377809044|ref|YP_005004265.1| transcription-repair coupling factor [Pediococcus claussenii ATCC
BAA-344]
gi|361055785|gb|AEV94589.1| transcription-repair coupling factor [Pediococcus claussenii ATCC
BAA-344]
Length = 1173
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/546 (39%), Positives = 342/546 (62%), Gaps = 9/546 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E K P+ L+KL + W + K I+ + +L+ELY R +K + P + +F
Sbjct: 554 EGKSPK-LNKLGGSD-WAKTKRSVASKIEDIADELVELYAKRESEKGFAFNPDDDYQRQF 611
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY TPDQ ++ +++RD+ E PMDRL+ GDVG+GKTEVALRA F V +GKQ
Sbjct: 612 ENDFPYSETPDQLRSIEEIKRDM-ESSRPMDRLLVGDVGYGKTEVALRAAFKAVESGKQV 670
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
+L PT +LA+QHFD +S+RFS YP I +G+LSRFQ+ + +E ++ +K G ++++VGTH
Sbjct: 671 AILVPTTILAQQHFDTMSDRFSGYP-IAIGMLSRFQTTKQVKETIEGLKDGSIDVVVGTH 729
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V + +LGLLV+DEEQRFGVK KE+I + VDVLTL+ATPIPRTL +++ G R
Sbjct: 730 RLLSKDVGFKDLGLLVIDEEQRFGVKHKERIKELRSQVDVLTLTATPIPRTLNMSMMGVR 789
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R PI+T++ + + I EL RGGQV+Y+ R+ +E+ + +Q
Sbjct: 790 DLSVIETPPTNRYPIQTYVLEENSGTLRDGINRELRRGGQVYYLHNRVHDIEKVVAEIQA 849
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P ++ HGQ +QLE+ + +F QG +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 LVPEANVGYIHGQMTEKQLEDILFEFIQGEFDVLVTTTIIETGIDIPNANTLFVENADHM 909
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQ+RGR+GR+ + A+AY Y +L++ +RL A+++ ELG GF++A +D+
Sbjct: 910 GLSQLYQIRGRIGRSSRVAYAYFTYQQNKVLTELGEKRLEAIKDFTELGSGFKIAMRDLS 969
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G + G+QQ G + +VG D++ +ML +++ K + ++V + +I + ++ LPS
Sbjct: 970 IRGAGNLLGKQQHGFIDSVGYDMYTQMLSDAI-KTKQGKKVTVKTDA-EIALGLDAFLPS 1027
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
+YI + +E + +D +M+ + L ++G+ +E L+ ++ A +
Sbjct: 1028 DYIEDQQQKIEFYKRLRQVENED--QIMEIQDDLIDRFGEYSVEVENLIHVTELKLKADE 1085
Query: 563 IGITKI 568
I KI
Sbjct: 1086 AQIEKI 1091
>gi|229153832|ref|ZP_04281963.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342]
gi|228629636|gb|EEK86332.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342]
Length = 1176
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 213/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R PI+
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPIQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|421119256|ref|ZP_15579580.1| transcription-repair coupling factor [Leptospira interrogans str.
Brem 329]
gi|410347886|gb|EKO98737.1| transcription-repair coupling factor [Leptospira interrogans str.
Brem 329]
Length = 1186
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/559 (40%), Positives = 358/559 (64%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 579 TESPR-LDSLGKST-WKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 636
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 637 AEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 695
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++VGTH+
Sbjct: 696 MLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHA 754
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK +DVLTL+ATPIPRTL++ALTG R+
Sbjct: 755 ILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLMDVLTLTATPIPRTLHMALTGIRE 814
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++L +
Sbjct: 815 LSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNYLSKL 874
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 875 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 934
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 935 LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 994
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N +P
Sbjct: 995 RGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNFFIPE 1051
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G+ P + ILL+K +R +A
Sbjct: 1052 TYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--IRTLA 1107
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + MK+
Sbjct: 1108 SNLGFEFVTEMKDEIKMKS 1126
>gi|404330857|ref|ZP_10971305.1| transcription-repair coupling factor [Sporolactobacillus vineae DSM
21990 = SL153]
Length = 1181
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 223/550 (40%), Positives = 342/550 (62%), Gaps = 13/550 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAE 81
+E K P+ S + W++ K+K K ++Q + DL++LY R + + K+ PA
Sbjct: 561 SEGKEPKIYS--LGGSEWKKVKSKAKSSVQDIADDLIKLYAKREASRGHAFAKDGPAQRA 618
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ +A ++++D+ E+E PMDRL+CGDVG+GKTEVALRA F + GKQ
Sbjct: 619 FEAAFPYQETADQIQAIDEIKKDM-EKEKPMDRLLCGDVGYGKTEVALRAAFKAIEDGKQ 677
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ ERF +P + +G+LSRF++ E+ E L +K G +++++GT
Sbjct: 678 VAFLVPTTILAQQHYETSMERFEDFP-VSIGVLSRFRTHKEQLETLRGLKAGTIDMVIGT 736
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VV+ +LGLL+VDEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 737 HRLLSKDVVFKDLGLLIVDEEQRFGVTHKEKIKRLKANVDVLTLTATPIPRTLHMSIMGV 796
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T+++ +++ V AI+ E+ RGGQV+++ R++ ++ D +
Sbjct: 797 RDLSIIETPPENRFPVQTYVTEYNETLVREAIEREMARGGQVYFLYNRVESIQRMADLIS 856
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHGQ +LE M F G +L+ T I+E G+DI N NT+IV D +
Sbjct: 857 TLVPDASVTFAHGQMKESELEAAMIDFLDGTADVLVSTTIIEEGVDIPNVNTLIVYDADK 916
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GLAQLYQLRGRVGR+++ A+AY Y ++++ A +RL A++E ELG GF++A +D+
Sbjct: 917 MGLAQLYQLRGRVGRSNRVAYAYFTYQRDKVMNEVAEKRLQAIKEFTELGSGFKIAMRDL 976
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VDEHCVISVPYKSVQIDININP 498
IRG G + G QQ G + +VG DL+ +ML +++ K V E V SV I+++++
Sbjct: 977 SIRGAGNLLGAQQHGFMDSVGFDLYSQMLKDAVRKRQGVQETLDRPV---SVSIEMDVDA 1033
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P YI ++M + + + + L +YG P + LLK +R
Sbjct: 1034 YIPDSYIGDSLQKIDMYKRFQSV--DTLQSVRDLEDELIDRYGSFPEEVSELLKVATLRV 1091
Query: 559 MAADIGITKI 568
+A + I +I
Sbjct: 1092 IANQLRIEEI 1101
>gi|338706308|ref|YP_004673076.1| transcription-repair coupling factor [Treponema paraluiscuniculi
Cuniculi A]
gi|335344369|gb|AEH40285.1| transcription-repair coupling factor [Treponema paraluiscuniculi
Cuniculi A]
Length = 1140
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/500 (43%), Positives = 322/500 (64%), Gaps = 7/500 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
NE +P L L + +WE RK + K +++ + L+ELY R + +PK+
Sbjct: 534 NEGNKPH-LDSLG-SKSWETRKARVKKSVENIAQKLVELYSLRKTTRGHAFPKDDEWQYA 591
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPYE T DQ+ +V++D+ E PMDRL+CGDVG+GKTE+A+RA F V GKQ
Sbjct: 592 FEAAFPYEETDDQRICIEEVKQDMQE-AVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQ 650
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+ L PT +L +QHF + RF +P +++ LSRF K+E+++ L + HG +++IVGT
Sbjct: 651 VVFLTPTTLLVEQHFRTICNRFKHFP-VRIEKLSRFVPKSEQKDILAKLAHGDIDLIVGT 709
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H L+ V + +LGL+++DEEQRFGV+ KEK+ K +VD L+LSATPIPRTL++ +
Sbjct: 710 HRLIQKDVSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHMGMLKI 769
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD SL++TPP RLPI+T + F V +AI+ ELDR GQ+FY+ RI+ LE LQ
Sbjct: 770 RDMSLLTTPPEGRLPIETVIQQFDPNLVATAIRKELDREGQIFYLHNRIENLESVKCMLQ 829
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P + I +AH S +LE+ E+F Q ++L+ T I+E+G+D+ NANTII+
Sbjct: 830 KLVPELSICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDRADM 889
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
+G++QLYQLRGRVGR+DK+A+AYL Y LSD A++RL + + +LG GF++A KDM
Sbjct: 890 YGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVALKDM 949
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G++Q+GD+ +VG DL+ ++L E++ ++ +H ++V ID+N +P
Sbjct: 950 EIRGVGNLLGKEQSGDIYSVGFDLYVQLLEEAIERL-QHAPNEQRIETV-IDLNYRGFIP 1007
Query: 502 SEYINHLENPMEMVNEAEKA 521
YI E ME+ + A
Sbjct: 1008 HTYIAADEIKMELYKKIAAA 1027
>gi|228956495|ref|ZP_04118292.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228803185|gb|EEM50006.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 1183
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 580 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 639
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 640 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 698
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 699 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 757
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 758 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 817
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 818 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 877
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 878 SELESVMLSFLEGQYDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 937
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 938 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 997
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 998 DSVGFDLYSQMLKDAIEQRRGTDGAENIV------NVEIDLEVDAYLPDAYISDSKQKIM 1051
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1052 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1096
>gi|336411741|ref|ZP_08592202.1| hypothetical protein HMPREF1018_04220 [Bacteroides sp. 2_1_56FAA]
gi|423260913|ref|ZP_17241815.1| transcription-repair coupling factor [Bacteroides fragilis
CL07T00C01]
gi|423267048|ref|ZP_17246030.1| transcription-repair coupling factor [Bacteroides fragilis
CL07T12C05]
gi|335940783|gb|EGN02648.1| hypothetical protein HMPREF1018_04220 [Bacteroides sp. 2_1_56FAA]
gi|387774674|gb|EIK36784.1| transcription-repair coupling factor [Bacteroides fragilis
CL07T00C01]
gi|392697751|gb|EIY90934.1| transcription-repair coupling factor [Bacteroides fragilis
CL07T12C05]
Length = 1125
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 244/607 (40%), Positives = 352/607 (57%), Gaps = 31/607 (5%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
++ E + PR L+KL T AWE+ K + K I+ + DL++LY R ++K Y P +
Sbjct: 490 YKGKEGEAPR-LNKLG-TGAWEKLKERTKTKIKDIARDLIKLYSQRREEKGFAYSPDSFL 547
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ KA DV++D+ ER+ PMDRL+CGDVGFGKTEVA+RA F V+
Sbjct: 548 QRELEASFIYEDTPDQSKATADVKQDM-ERDMPMDRLVCGDVGFGKTEVAIRAAFKAVAD 606
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ VL PT VLA QHF +R P +V LSR ++ A+ + + ++ G +NI+
Sbjct: 607 NKQVAVLVPTTVLAYQHFQTFRDRLKGLP-CRVEYLSRARTAAQAKAVIKGLEAGDVNIL 665
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +LG V + +LGLL++DEEQ+FGV KEK+ K++VD LT++ATPIPRTL +L
Sbjct: 666 IGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSL 725
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+ISTPPP R PI+T + FS+E + AI +E+ R GQVF V RI L E
Sbjct: 726 MGARDLSVISTPPPNRYPIQTEVHTFSEEVIADAINFEMSRNGQVFLVNNRIANLPELKA 785
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+ + P IAI HGQ +LE+ + F +LI T I+ESG+DI NANTII+
Sbjct: 786 MILRHIPDCRIAIGHGQMEPAELEQIIFGFVNYDYDVLIATTIIESGIDIPNANTIIINQ 845
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q FGL+ L+Q+RGRVGR++K+A YL P S L+ +A RL A+E +LG G +A
Sbjct: 846 AQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAM 905
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHC-----------VISV 485
+D+ IRG G + G +Q+G + ++G + + ++L E++ K DE VIS
Sbjct: 906 QDLDIRGAGNMLGAEQSGFIADLGYETYQKILSEAVHELKTDEFAELYADELKGEGVISG 965
Query: 486 P--YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGK 542
+ Q++ ++ LP+ Y+ M + E + ++D+ F L ++G
Sbjct: 966 EEFVEECQVESDLELLLPANYVTGSSERMLLYRELDGLTLDRDVDA---FRSRLEDRFGP 1022
Query: 543 EPYSMEILLKKLYVRRMAADIGITKIY-ASGKMVGMKTN------MNKKVFKMMIDSMTS 595
P E LL+ + +RR+AA +G+ K++ G+M N F MID M
Sbjct: 1023 IPPETEELLRIVPLRRLAARLGVEKVFLKGGRMTLFFVNNAESPYYQSAAFGKMIDYMMK 1082
Query: 596 EVHRNSL 602
R L
Sbjct: 1083 YTRRCDL 1089
>gi|218231044|ref|YP_002364903.1| transcription-repair coupling factor [Bacillus cereus B4264]
gi|218159001|gb|ACK58993.1| transcription-repair coupling factor [Bacillus cereus B4264]
Length = 1176
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALIREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENIV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|90408104|ref|ZP_01216274.1| transcription-repair coupling factor [Psychromonas sp. CNPT3]
gi|90310790|gb|EAS38905.1| transcription-repair coupling factor [Psychromonas sp. CNPT3]
Length = 1158
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 226/605 (37%), Positives = 356/605 (58%), Gaps = 12/605 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA-IAEFAAQFPYE 89
LSKL T W++ K K ++ + +L+++Y R + Y N A F FP+E
Sbjct: 552 LSKLG-TETWQKSKQKAAERVRDVAAELLDIYAQRAAKIGFKYTLNKNNYALFKQAFPFE 610
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ A V D+ R+ PMDRLICGDVGFGKTEVA+RA F V +Q +L PT
Sbjct: 611 ETPDQSNAINAVLNDMCSRQ-PMDRLICGDVGFGKTEVAMRATFLAVDNTRQVAILVPTT 669
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH++ +RF+ +P ++V +LSRF+S E+++ L ++ G ++I++GTH LL S V
Sbjct: 670 LLAQQHYENFKDRFASWP-VRVEVLSRFKSAKEQKQILLELQEGKIDILIGTHKLLSSTV 728
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
VY +LGLL++DEE RFGV+QKEKI + + +D+LTL+ATPIPRTL +++ G RD S+I+T
Sbjct: 729 VYADLGLLIIDEEHRFGVRQKEKIKALRAQIDILTLTATPIPRTLNMSMNGMRDLSIIAT 788
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP +RL +KT + + + AI E+ RGGQV+++ ++ + + ++ P +
Sbjct: 789 PPSKRLAVKTFVEQKTDALISDAITREIMRGGQVYFLHNNVETINKAAADIEALVPSAKV 848
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
++AHGQ QLE M F +L+CT I+E+G+DI +ANTII+ GLAQL+Q
Sbjct: 849 SVAHGQMNEHQLERIMSDFYHQRQNVLVCTTIIETGIDIPSANTIIINRADHLGLAQLHQ 908
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR+ +A+AYL P + L+S A +RL A+ LG GF LA D+ IRG G +
Sbjct: 909 LRGRVGRSHHQAYAYLLTPTRKLMSKDAKKRLDAISSLNTLGAGFTLATHDLEIRGAGEL 968
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKV---DEHCVISVPYKSVQIDININPRLPSEYIN 506
G++Q+G + ++G +L+ EML ++++ + E + + +++ I +PS+YI
Sbjct: 969 LGDEQSGQISSIGYNLYMEMLDQAVNALQNGQETTLEQLLSSQADVELRIPALIPSDYIM 1028
Query: 507 HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGIT 566
+ + + A +D L + L ++G P + L+ ++++ +GI
Sbjct: 1029 DVNTRLSLYKRI--ANSKDKHQLKELQIELIDRFGLLPAITKNLIHITQMKQLCNKLGIK 1086
Query: 567 KIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG-DQIKAELLLELPREQLLNW 625
++ A K + N KV M + S+ + N+ EG ++K LE +Q +NW
Sbjct: 1087 RLDAHAKGGNIIFTQNTKVDPMFLVSLL-QTQANTFKLEGPTKLKFTHQLE-DTQQRINW 1144
Query: 626 IFQCL 630
I Q L
Sbjct: 1145 ITQLL 1149
>gi|116328533|ref|YP_798253.1| transcription-repair coupling factor [Leptospira borgpetersenii
serovar Hardjo-bovis str. L550]
gi|116331261|ref|YP_800979.1| transcription-repair coupling factor [Leptospira borgpetersenii
serovar Hardjo-bovis str. JB197]
gi|116121277|gb|ABJ79320.1| Transcription-repair coupling factor [Leptospira borgpetersenii
serovar Hardjo-bovis str. L550]
gi|116124950|gb|ABJ76221.1| Transcription-repair coupling factor [Leptospira borgpetersenii
serovar Hardjo-bovis str. JB197]
Length = 1176
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/559 (41%), Positives = 355/559 (63%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 569 TESPR-LDSLGKNT-WKKTKDRVQKAVETLAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 626
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 627 AEFEYEETPDQIEAIEAVKKDL-ESSVPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 685
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE E L G +++I+GTH+
Sbjct: 686 MLAPTTILALQHYNTFKNRFRNYP-LRVELVSRFKTSAEIREILSDFSLGKIDMIIGTHA 744
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 745 ILSSKLKPKNLGLLIIDEEQRFGVNHKEAIKRFKNLVDVLTLTATPIPRTLHMALTGIRE 804
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ ++ + AI+ E+ R GQVFY+ R++ +E+ +L +
Sbjct: 805 LSIIATPPKNRQSVETYVLEEDEDLIAEAIRNEIQRDGQVFYLYNRVETIEQETKYLGEI 864
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 865 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 924
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AYL P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 925 LSQLYQIRGRVGRSDRKAFAYLLLPKDRVVTEQAEKRLNTIYEYQELGSGFKVAMRDLEI 984
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML E+++++ E V+ V + +N N +P
Sbjct: 985 RGAGNLLGKEQSGDIMEVGFDLYVRMLEEAIARIKGEEVVVEV---RTSVTLNTNFFIPE 1041
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G P ILL+K +R +A
Sbjct: 1042 TYISDTRQKIEFYKKFEGA--RDLQEIDEVYREMVERFGDPPEDARTFILLEK--IRTLA 1097
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + + +K+
Sbjct: 1098 SNLGFESVTETKDEIKLKS 1116
>gi|332291666|ref|YP_004430275.1| transcription-repair coupling factor [Krokinobacter sp. 4H-3-7-5]
gi|332169752|gb|AEE19007.1| transcription-repair coupling factor [Krokinobacter sp. 4H-3-7-5]
Length = 1137
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 223/568 (39%), Positives = 332/568 (58%), Gaps = 24/568 (4%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQ 85
+P + KL + AW++ K K K ++ + +L++LY R QK + P E A
Sbjct: 497 KPPQIYKLG-SQAWKKLKAKTKSRVKHVAFNLIKLYAKRRLQKGYAFGPDTHMQHELEAS 555
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ A DV+RD+ E E PMDRL+CGDVGFGKTEVA+RA F V GKQ VL
Sbjct: 556 FIYEDTPDQSSATEDVKRDM-ESERPMDRLVCGDVGFGKTEVAIRAAFKAVDGGKQVAVL 614
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA QH ER +P +K+ L+RF++ EK E L ++ G ++I++GTH L
Sbjct: 615 VPTTILAYQHARTFKERLKDFP-VKIDYLNRFRTAKEKREVLAGLESGAIDIVIGTHQLT 673
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
V + +LGLLV+DEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L RD S
Sbjct: 674 SKNVNFKDLGLLVIDEEQKFGVAVKDKLKTISETVDTLTLTATPIPRTLQFSLMAARDLS 733
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
I+T PP R PI++++ FS+E + A++YE+ RGGQVF++ RI+ ++E +Q+ P
Sbjct: 734 TINTAPPNRYPIESNVVRFSEEVIRDAVQYEIQRGGQVFFIHNRIENIKEVAGLIQRLVP 793
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
+ I HGQ + LE M F G +L+ T I+ESGLD+ NANTI + + FGL+
Sbjct: 794 DAKVGIGHGQMEGKTLEAKMLSFMNGEFDVLVSTTIIESGLDVPNANTIFINNANNFGLS 853
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+Q+RGRVGR++K+A Y P S ++D A +R+ ALE+ LG GF +A KD+ IRG
Sbjct: 854 DLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKRIQALEQFSVLGSGFNIAMKDLEIRG 913
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV-------------PYKSVQI 492
G + G +Q+G + +G D + ++L E++ ++ E + K I
Sbjct: 914 AGDLLGGEQSGFINEIGFDTYQKILNEAIDELKEDEFSELYNDDPAFAKAEKDYVKDTVI 973
Query: 493 DININPRLPSEYINHLENPMEMVNEAE--KAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 550
D + + P +Y+N++ + + + K EQ L F L ++G P E L
Sbjct: 974 DTDFSLLFPDDYVNNITERLNLYTQLNNVKTEEQ----LDDFERQLVDRFGPLPEEAEDL 1029
Query: 551 LKKLYVRRMAADIGITKIY-ASGKMVGM 577
L + ++ +A IG+ K+ +GK+ G
Sbjct: 1030 LDSVRIKWVATKIGLEKVVLKNGKLTGF 1057
>gi|255691931|ref|ZP_05415606.1| transcription-repair coupling factor [Bacteroides finegoldii DSM
17565]
gi|260622336|gb|EEX45207.1| transcription-repair coupling factor [Bacteroides finegoldii DSM
17565]
Length = 1123
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 233/570 (40%), Positives = 338/570 (59%), Gaps = 24/570 (4%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
++ E + PR L+KL T AWE+ K + K I+ + DL++LY R ++K Y P +
Sbjct: 490 YKGKEGEAPR-LNKLG-TGAWEKLKERTKSKIKDIARDLIKLYSQRRQEKGFSYSPDSFL 547
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ KA +DV+ D+ E + PMDRL+CGDVGFGKTEVA+RA F V+
Sbjct: 548 QRELEASFIYEDTPDQSKATIDVKADM-ESDRPMDRLVCGDVGFGKTEVAIRAAFKAVAD 606
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ VL PT VLA QHF +R P +V LSR ++ A+ + L +K G +NI+
Sbjct: 607 NKQVAVLVPTTVLAYQHFQTFRDRLKGLP-CRVEYLSRARTAAQSKAVLKGLKEGDVNIL 665
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +LG V + +LGLL+VDEEQ+FGV KEK+ K++VD LT++ATPIPRTL +L
Sbjct: 666 IGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSL 725
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+ISTPPP R PI+T + F++E + AI +E+ R GQVF+V RI L E
Sbjct: 726 MGARDLSVISTPPPNRYPIQTEVHTFNEEVITDAINFEMSRNGQVFFVNNRIANLPELKA 785
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+++ P +AI HGQ QLE+ + F +L+ T I+ESG+DI NANTII+
Sbjct: 786 MIERHIPDCRVAIGHGQMEPAQLEKIILDFVNYDYDVLLATTIIESGIDIPNANTIIINQ 845
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q FGL+ L+Q+RGRVGR++K+A YL P S L+ + RL A+E +LG G +A
Sbjct: 846 AQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTAEGKRRLQAIENFSDLGSGIHIAM 905
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVP---------- 486
+D+ IRG G + G +Q+G V ++G + + ++L E++ K DE +
Sbjct: 906 QDLDIRGAGNLLGAEQSGFVADLGYETYQKILSEAVHELKNDEFADLYAEEIKGEGQISG 965
Query: 487 ---YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGK 542
Q++ ++ LP+ Y+ M + E + ++D+ F L ++G
Sbjct: 966 EGFVDECQVESDLELLLPANYVTGSSERMLLYRELDSLTLDKDVAA---FRSRLEDRFGP 1022
Query: 543 EPYSMEILLKKLYVRRMAADIGITKIYASG 572
P E LL+ + +RR+AA +G KI+ G
Sbjct: 1023 VPPETEELLRIVPLRRLAARLGAEKIFLKG 1052
>gi|15639335|ref|NP_218784.1| transcription-repair coupling factor (trcF) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189025577|ref|YP_001933349.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum SS14]
gi|378974972|ref|YP_005223580.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum DAL-1]
gi|408502225|ref|YP_006869669.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum str. Mexico A]
gi|3322623|gb|AAC65332.1| transcription-repair coupling factor (trcF) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189018152|gb|ACD70770.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum SS14]
gi|374680370|gb|AEZ60660.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum DAL-1]
gi|408475588|gb|AFU66353.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum str. Mexico A]
Length = 1140
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/500 (43%), Positives = 322/500 (64%), Gaps = 7/500 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
NE +P L L + +WE RK + K +++ + L+ELY R + +PK+
Sbjct: 534 NEGNKPH-LDSLG-SKSWETRKARVKKSVENIAQKLVELYSLRKTTRGHAFPKDDEWQYA 591
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPYE T DQ+ +V++D+ E PMDRL+CGDVG+GKTE+A+RA F V GKQ
Sbjct: 592 FEAAFPYEETDDQRICIEEVKQDMQE-AVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQ 650
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+ L PT +L +QHF + RF +P +++ LSRF K+E+++ L + HG +++IVGT
Sbjct: 651 VVFLTPTTLLVEQHFRTICNRFKHFP-VRIEKLSRFVPKSEQKDILAKLAHGDIDLIVGT 709
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H L+ V + +LGL+++DEEQRFGV+ KEK+ K +VD L+LSATPIPRTL++ +
Sbjct: 710 HRLIQKDVSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHMGMLKI 769
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD SL++TPP RLPI+T + F V +AI+ ELDR GQ+FY+ RI+ LE LQ
Sbjct: 770 RDMSLLTTPPEGRLPIETVIQQFDPNLVATAIRKELDREGQIFYLHNRIENLESVKCMLQ 829
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P + I +AH S +LE+ E+F Q ++L+ T I+E+G+D+ NANTII+
Sbjct: 830 KLVPELSICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDRADM 889
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
+G++QLYQLRGRVGR+DK+A+AYL Y LSD A++RL + + +LG GF++A KDM
Sbjct: 890 YGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVALKDM 949
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G++Q+GD+ +VG DL+ ++L E++ ++ +H ++V ID+N +P
Sbjct: 950 EIRGVGNLLGKEQSGDIYSVGFDLYVQLLEEAIERL-QHAPNEQRIETV-IDLNYRGFIP 1007
Query: 502 SEYINHLENPMEMVNEAEKA 521
YI E ME+ + A
Sbjct: 1008 HTYIAADEIKMELYKKIAAA 1027
>gi|60682433|ref|YP_212577.1| transcription-repair coupling factor [Bacteroides fragilis NCTC 9343]
gi|265766134|ref|ZP_06094175.1| transcription-repair coupling factor [Bacteroides sp. 2_1_16]
gi|423250731|ref|ZP_17231746.1| transcription-repair coupling factor [Bacteroides fragilis
CL03T00C08]
gi|423254057|ref|ZP_17234987.1| transcription-repair coupling factor [Bacteroides fragilis
CL03T12C07]
gi|423271089|ref|ZP_17250060.1| transcription-repair coupling factor [Bacteroides fragilis
CL05T00C42]
gi|423274913|ref|ZP_17253859.1| transcription-repair coupling factor [Bacteroides fragilis
CL05T12C13]
gi|423283679|ref|ZP_17262563.1| transcription-repair coupling factor [Bacteroides fragilis HMW 615]
gi|60493867|emb|CAH08658.1| putative transcription-repair coupling factor [Bacteroides fragilis
NCTC 9343]
gi|263253802|gb|EEZ25267.1| transcription-repair coupling factor [Bacteroides sp. 2_1_16]
gi|392651688|gb|EIY45350.1| transcription-repair coupling factor [Bacteroides fragilis
CL03T00C08]
gi|392654615|gb|EIY48262.1| transcription-repair coupling factor [Bacteroides fragilis
CL03T12C07]
gi|392699013|gb|EIY92195.1| transcription-repair coupling factor [Bacteroides fragilis
CL05T00C42]
gi|392704192|gb|EIY97331.1| transcription-repair coupling factor [Bacteroides fragilis
CL05T12C13]
gi|404580717|gb|EKA85425.1| transcription-repair coupling factor [Bacteroides fragilis HMW 615]
Length = 1125
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 244/607 (40%), Positives = 352/607 (57%), Gaps = 31/607 (5%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
++ E + PR L+KL T AWE+ K + K I+ + DL++LY R ++K Y P +
Sbjct: 490 YKGKEGEAPR-LNKLG-TGAWEKLKERTKTKIKDIARDLIKLYSQRREEKGFAYSPDSFL 547
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ KA DV++D+ ER+ PMDRL+CGDVGFGKTEVA+RA F V+
Sbjct: 548 QRELEASFIYEDTPDQSKATADVKQDM-ERDMPMDRLVCGDVGFGKTEVAIRAAFKAVAD 606
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ VL PT VLA QHF +R P +V LSR ++ A+ + + ++ G +NI+
Sbjct: 607 NKQVAVLVPTTVLAYQHFQTFRDRLKGLP-CRVEYLSRARTAAQAKAVIKGLEAGDVNIL 665
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +LG V + +LGLL++DEEQ+FGV KEK+ K++VD LT++ATPIPRTL +L
Sbjct: 666 IGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSL 725
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+ISTPPP R PI+T + FS+E + AI +E+ R GQVF V RI L E
Sbjct: 726 MGARDLSVISTPPPNRYPIQTEVHTFSEEVIADAINFEMSRNGQVFLVNNRIANLPELKA 785
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+ + P IAI HGQ +LE+ + F +LI T I+ESG+DI NANTII+
Sbjct: 786 MILRHIPDCRIAIGHGQMEPAELEQIIFGFVNYDYDVLIATTIIESGIDIPNANTIIINQ 845
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q FGL+ L+Q+RGRVGR++K+A YL P S L+ +A RL A+E +LG G +A
Sbjct: 846 AQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAM 905
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHC-----------VISV 485
+D+ IRG G + G +Q+G + ++G + + ++L E++ K DE VIS
Sbjct: 906 QDLDIRGAGNMLGAEQSGFIADLGYETYQKILSEAVHELKTDEFAELYADELKGEGVISG 965
Query: 486 P--YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGK 542
+ Q++ ++ LP+ Y+ M + E + ++D+ F L ++G
Sbjct: 966 EEFVEECQVESDLELLLPANYVTGSSERMLLYRELDGLTLDRDVDA---FRSRLEDRFGP 1022
Query: 543 EPYSMEILLKKLYVRRMAADIGITKIY-ASGKMVGMKTN------MNKKVFKMMIDSMTS 595
P E LL+ + +RR+AA +G+ K++ G+M N F MID M
Sbjct: 1023 IPPETEELLRIVPLRRLAARLGVEKVFLKGGRMTLFFVNNAESPYYQSAAFGKMIDYMMK 1082
Query: 596 EVHRNSL 602
R L
Sbjct: 1083 YTRRCDL 1089
>gi|311028986|ref|ZP_07707076.1| transcription-repair coupling factor [Bacillus sp. m3-13]
gi|311032274|ref|ZP_07710364.1| transcription-repair coupling factor [Bacillus sp. m3-13]
Length = 1178
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/531 (38%), Positives = 336/531 (63%), Gaps = 8/531 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ + KL T W++ K K + ++Q + DL++LY R + P E
Sbjct: 558 SEGKEPK-VYKLGGTD-WKKVKNKVESSVQDIADDLIKLYAEREASVGHAFSPDGEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ ++ +++ D+ E+ PMDRL+CGDVG+GKTEVA+RA F ++ GKQ
Sbjct: 616 FEATFPYQETEDQLRSIHEIKLDM-EKTRPMDRLLCGDVGYGKTEVAIRAAFKAITDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+S+ ++ E + + +G ++I+VGT
Sbjct: 675 VAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRSRKQQTETMKGLGNGTVDIVVGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL + Y +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDIKYKDLGLLIIDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQ++++ R++ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVMEYNGNLVKEAIERELARGGQIYFLYNRVEDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHG+ +LE M +F +G ++L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPEARVTYAHGKMTENELESVMIQFLEGEAEVLVSTTIIETGVDIPNVNTLIVFDADR 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG D++ +ML E++ + + + + ID+ ++ +P
Sbjct: 974 SIRGAGNLLGAQQHGFIDSVGFDMYSQMLKEAIEQ-RQGAKNAKKAHEISIDVELDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 552
YI + ++M ++ L++ + ++ ++G P ++ L +
Sbjct: 1033 ESYIPDSKQKIDMYKRFRGLESKE--DLLELQDEMKDRFGNYPKEVDYLFQ 1081
>gi|408794221|ref|ZP_11205826.1| transcription-repair coupling factor [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408461456|gb|EKJ85186.1| transcription-repair coupling factor [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 1140
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/529 (41%), Positives = 341/529 (64%), Gaps = 9/529 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQKK 96
+W++ K + + ++ K+ +L+ LY +R+K +P + EF A F +E TPDQ
Sbjct: 548 NSWKKAKDRVQESVDKLAEELVLLYSNRMKLNGFAFPPDTIWQEEFEAAFEFEETPDQIS 607
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A V++DL E PMDRL+CGDVG+GKTEVA+RA F V+ AGKQ M+L PT +L+ QHF
Sbjct: 608 AIESVKQDL-ESARPMDRLVCGDVGYGKTEVAIRAAFKVIMAGKQVMLLTPTTILSLQHF 666
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ R+ YP IK+ +SRF+S AE E L G +++++GTH++L S+V NLGL
Sbjct: 667 NTFKLRYENYP-IKIAFVSRFRSAAEIREDLKNFSEGKIDMLIGTHAILSSKVKPKNLGL 725
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L++DEEQ+FGV KE I FK VDVLTL+ATPIPRTL++ALTG R+ S+IST P R
Sbjct: 726 LIIDEEQKFGVTHKEAIKKFKNLVDVLTLTATPIPRTLHMALTGIRELSIISTAPKNRQS 785
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T++ + AI+ E++RGGQVFY+ R++ +EE +++ P V + I HGQ
Sbjct: 786 VETYVLEEDDTLIQEAIRKEIERGGQVFYLYNRVESIEEEAAYIRSLVPEVSVGILHGQL 845
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
++EET+ F + IL+ T I+ESG+D+ N NT+IV+ FGL+QLYQ+RGRVGR
Sbjct: 846 TEDEIEETLVDFYEKKYDILVTTTIIESGIDMPNVNTLIVKRADMFGLSQLYQIRGRVGR 905
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+D++A+AY+FYP K L+++ A +RL + E +ELG GF++A +D+ IRG G + G++Q+G
Sbjct: 906 SDRKAYAYMFYPSKKLMTELAEKRLNTIFEYQELGSGFKVAMRDLEIRGAGNLLGKEQSG 965
Query: 457 DVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPSEYINHLENPMEMV 515
D+ VG DL+ +ML E++S++ E + V +++ N LP +YI + +E
Sbjct: 966 DIMEVGFDLYVKMLEEAISRIKGEEVRVEV---RTAVNLKTNFYLPDDYIPDTKQKIEFY 1022
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
E +A D + + + + ++G+ P + ++ +R +A+++G
Sbjct: 1023 KRFEGSANLD--EIEELSLEMEDRFGELPQIAKTFVELEKIRTLASNLG 1069
>gi|256828791|ref|YP_003157519.1| transcription-repair coupling factor [Desulfomicrobium baculatum DSM
4028]
gi|256577967|gb|ACU89103.1| transcription-repair coupling factor [Desulfomicrobium baculatum DSM
4028]
Length = 1146
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/538 (41%), Positives = 326/538 (60%), Gaps = 27/538 (5%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQK 95
+ AW + + + + +I K+ DL+E+Y R K Y P + EF A F +E T DQ+
Sbjct: 548 SAAWSKARERTRQSIAKIARDLVEMYAFRKIAKGFQYNPISELYWEFEASFGFEETRDQE 607
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
KA DV D+ E+ PMDRL+CGDVGFGKTEVALRA F V GKQ +L PT VLA+QH
Sbjct: 608 KAIADVLADM-EKPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVALLCPTTVLAEQH 666
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
F +R + I VGLLSRF A ++ L+ + G +++++GTH +L V + NL
Sbjct: 667 FQTFRQRMEPF-SITVGLLSRFVPAAGQKRTLEAARRGQVDVLIGTHRMLSKDVEFANLA 725
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL++DEEQRFGVK KE+I + ++DVLTL+ATPIPRTL L+L+G R S+I TPP +R
Sbjct: 726 LLILDEEQRFGVKHKERIKKMRSTIDVLTLTATPIPRTLQLSLSGIRGLSVIETPPRDRK 785
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P++T L ++ ++ EL RGGQVF+V R++GLE ++F+ PG + + HGQ
Sbjct: 786 PVETSLLERDPAQLKVILERELARGGQVFWVYNRVQGLERVVEFVSSLVPGARVGMGHGQ 845
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
+ LEETM KF G + +L+CT I+ESGLD ANT+IV Q FGL QLYQLRGRVG
Sbjct: 846 MKAHDLEETMHKFWHGELDVLVCTAIIESGLDFPRANTLIVDQAQLFGLGQLYQLRGRVG 905
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+ ++A+AY PD L + + +RL + + LG GF++A +D+ +RG G I GE Q+
Sbjct: 906 RSSEQAYAYFIIPDLDRLQETSRKRLKIILDMDYLGAGFKVAMEDLRLRGAGNILGEAQS 965
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL--------PSEYINH 507
G +G VG+DLF EML E ++++ + +++ I P L P EY+
Sbjct: 966 GTIGKVGLDLFLEMLEEEVTRL----------RGGKVETEIEPELNLGFQALIPEEYVAD 1015
Query: 508 LENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME----ILLKKLYVRRMAA 561
+ + ++ +++ + +R ++G P +++ +L+ K+ RR+ A
Sbjct: 1016 GKERLHYYKALSSCHDEG--AIVEIVDDMRDRFGSLPEALKTFVAVLMIKIDARRLGA 1071
>gi|406671666|ref|ZP_11078905.1| transcription-repair coupling factor [Facklamia hominis CCUG 36813]
gi|405580916|gb|EKB54975.1| transcription-repair coupling factor [Facklamia hominis CCUG 36813]
Length = 1197
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 237/610 (38%), Positives = 362/610 (59%), Gaps = 35/610 (5%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEF 82
E K P+ L KL + W + K K I+ + +L+ELY R ++K + + P EF
Sbjct: 562 EAKTPK-LHKLG-GSEWVKTKQKVSSKIEDIADELIELYAKREQEKGYAFSMDTPEQLEF 619
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY TPDQ + ++++D+ E++ PMDRL+ GDVG+GKTEVA+RAIF V GKQ
Sbjct: 620 EKAFPYIETPDQLQTSSEIKKDM-EKDRPMDRLLVGDVGYGKTEVAMRAIFKAVMDGKQV 678
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QH+ + ERF+ YP ++ +LSRF S+ E++E + +K G ++VGTH
Sbjct: 679 AFLVPTTILAQQHYQSLLERFADYP-FEIRMLSRFASQKEQKETIKGLKTGACQVVVGTH 737
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V + +LGL+VVDEEQRFGVK KE++ K VDVLTL+ATPIPRTL++A+ G R
Sbjct: 738 RLLSKDVTFLDLGLMVVDEEQRFGVKHKERLKQLKSQVDVLTLTATPIPRTLHMAMVGVR 797
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T++ ++ + AI+ E+DRGGQ FY+ R+ + D L Q
Sbjct: 798 DLSVIETPPSNRYPVQTYVMEQNEAAIKFAIEREIDRGGQCFYLYNRVASIYHRADQLSQ 857
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A+AHGQ +LE + +F QG +L+ T I+E+G+DI N NT+ ++ +
Sbjct: 858 LVPEARVAVAHGQMSEVELENVLYEFIQGNYDVLVTTTIIETGVDIPNVNTLFIEKADRM 917
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+ LYQLRGRVGR ++ A+AYL Y LS+ + +RL A+ E ELG GF++A +D+
Sbjct: 918 GLSTLYQLRGRVGRTNRLAYAYLMYDPMKQLSEISEKRLNAIREFTELGSGFKIAMRDLS 977
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD--EHCVISVPYKSVQIDININPRL 500
IRG G + G QQ+G + +VG DL+ +ML E++ + ++ + ++ V+ID++I+ +
Sbjct: 978 IRGAGNLLGSQQSGFIDSVGFDLYSQMLREAIDRRQGKQNMLENLNQSVVEIDLSIDAYI 1037
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRR-------QYGKEPYSMEILLKK 553
P YI+ +E +K A + M E R +YG+ P + LL
Sbjct: 1038 PDSYIS---------DERQKIAAYKMLQKMDGMEEYREIQDQWIDRYGEFPDEVANLL-- 1086
Query: 554 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG-DQIKAE 612
DI + + YAS V +K N + +M +S+ S+ +E + +KA
Sbjct: 1087 --------DIALLRYYASRSGV-LKLTRNHQSIVVMFNSIASQYFYGPKVYEALENVKAR 1137
Query: 613 LLLELPREQL 622
+ L ++QL
Sbjct: 1138 EKVILNKDQL 1147
>gi|302380838|ref|ZP_07269301.1| transcription-repair coupling factor [Finegoldia magna
ACS-171-V-Col3]
gi|302311333|gb|EFK93351.1| transcription-repair coupling factor [Finegoldia magna
ACS-171-V-Col3]
Length = 1168
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/546 (39%), Positives = 348/546 (63%), Gaps = 10/546 (1%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFA 83
K+P +L+KLS W + K K K ++ +M DL+ELY R K K + ++ EF
Sbjct: 563 VKKP-SLNKLS-GNDWAKAKQKAKKSVDEMADDLVELYSKRAKLKGYQFSQDTEWQREFE 620
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
FPYE T Q ++ +++ D+ E + PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 621 DSFPYEETDSQVRSIEEIKSDM-ESDRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVA 679
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
L PT +LA+QHF+ + ERF YP I+V ++SRF S A +++ + ++ G ++++VGTH
Sbjct: 680 FLVPTTILAQQHFNTIKERFRDYP-IRVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHR 738
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L + + +LGLLV+DEEQRFGV+ KEK+ S + +VDVLTLSATPIPRTL + LTG RD
Sbjct: 739 ILSKNLKFKDLGLLVIDEEQRFGVRHKEKLKSMRENVDVLTLSATPIPRTLQMGLTGIRD 798
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF-LQQ 322
SL+ PP +R PI T+++ ++ + AI ELDRGGQ+++V RI+ +++ M+F L++
Sbjct: 799 MSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRELDRGGQIYFVYNRIEDIDQ-MEFKLKE 857
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P ++IAIAHG+ ++LE M F G +L+CT I+E+GLDIQN NT+I+ + +
Sbjct: 858 LVPELNIAIAHGRMNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKM 917
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQL+GR+GR+D+ + AY Y + L++ + +RL A+++ E G GF++A +D+
Sbjct: 918 GLSQLYQLKGRIGRSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRDLE 977
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
+RG G + GE Q G + +G DL+ ++L +++ + IS +V I+I +N +P
Sbjct: 978 LRGAGNLLGESQHGHIAKIGYDLYVKLLEQAVREAKGET-ISENKNTVMIEIKVNGYIPE 1036
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
+YI+ E +++ + ++D + + + L ++G P + ++ ++ A
Sbjct: 1037 DYISENETKIDIYKKIASIQDEDDYS--EIIDELIDRFGDVPKPIVNIMDVSIIKAFCAR 1094
Query: 563 IGITKI 568
+ I I
Sbjct: 1095 LSIESI 1100
>gi|53714414|ref|YP_100406.1| transcription-repair coupling factor [Bacteroides fragilis YCH46]
gi|52217279|dbj|BAD49872.1| transcription-repair coupling factor [Bacteroides fragilis YCH46]
Length = 1125
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 244/607 (40%), Positives = 352/607 (57%), Gaps = 31/607 (5%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
++ E + PR L+KL T AWE+ K + K I+ + DL++LY R ++K Y P +
Sbjct: 490 YKGKEGEAPR-LNKLG-TGAWEKLKERTKTKIKDIARDLIKLYSQRREEKGFAYSPDSFL 547
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ KA DV++D+ ER+ PMDRL+CGDVGFGKTEVA+RA F V+
Sbjct: 548 QRELEASFIYEDTPDQSKATADVKQDM-ERDMPMDRLVCGDVGFGKTEVAIRAAFKAVAD 606
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ VL PT VLA QHF +R P +V LSR ++ A+ + + ++ G +NI+
Sbjct: 607 NKQVAVLVPTTVLAYQHFQTFRDRLKGLP-CRVEYLSRARTAAQAKAVIKGLEAGDVNIL 665
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +LG V + +LGLL++DEEQ+FGV KEK+ K++VD LT++ATPIPRTL +L
Sbjct: 666 IGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSL 725
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+ISTPPP R PI+T + FS+E + AI +E+ R GQVF V RI L E
Sbjct: 726 MGARDLSVISTPPPNRYPIQTEVHTFSEEVIADAINFEMSRNGQVFLVNNRIANLPELKA 785
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+ + P IAI HGQ +LE+ + F +LI T I+ESG+DI NANTII+
Sbjct: 786 MILRHIPDCRIAIGHGQMEPAELEQIIFGFVNYDYDVLIATTIIESGIDIPNANTIIINQ 845
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q FGL+ L+Q+RGRVGR++K+A YL P S L+ +A RL A+E +LG G +A
Sbjct: 846 AQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAM 905
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHC-----------VISV 485
+D+ IRG G + G +Q+G + ++G + + ++L E++ K DE VIS
Sbjct: 906 QDLDIRGAGNMLGAEQSGFIADLGYETYQKILSEAVHELKTDEFAELYADELKGEGVISG 965
Query: 486 P--YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGK 542
+ Q++ ++ LP+ Y+ M + E + ++D+ F L ++G
Sbjct: 966 EEFVEECQVESDLELLLPANYVTGSSERMLLYRELDGLTLDRDVDA---FRSRLEDRFGP 1022
Query: 543 EPYSMEILLKKLYVRRMAADIGITKIY-ASGKMVGMKTN------MNKKVFKMMIDSMTS 595
P E LL+ + +RR+AA +G+ K++ G+M N F MID M
Sbjct: 1023 IPPETEELLRIVPLRRLAARLGVEKVFLKGGRMTLFFVNNAESPYYQSAAFGKMIDYMMK 1082
Query: 596 EVHRNSL 602
R L
Sbjct: 1083 YTRRCDL 1089
>gi|402554360|ref|YP_006595631.1| transcription-repair coupling factor [Bacillus cereus FRI-35]
gi|401795570|gb|AFQ09429.1| transcription-repair coupling factor [Bacillus cereus FRI-35]
Length = 1176
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|384421868|ref|YP_005631227.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum str. Chicago]
gi|291059734|gb|ADD72469.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 1155
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/500 (43%), Positives = 322/500 (64%), Gaps = 7/500 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
NE +P L L + +WE RK + K +++ + L+ELY R + +PK+
Sbjct: 549 NEGNKPH-LDSLG-SKSWETRKARVKKSVENIAQKLVELYSLRKTTRGHAFPKDDEWQYA 606
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPYE T DQ+ +V++D+ E PMDRL+CGDVG+GKTE+A+RA F V GKQ
Sbjct: 607 FEAAFPYEETDDQRICIEEVKQDMQE-AVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQ 665
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+ L PT +L +QHF + RF +P +++ LSRF K+E+++ L + HG +++IVGT
Sbjct: 666 VVFLTPTTLLVEQHFRTICNRFKHFP-VRIEKLSRFVPKSEQKDILAKLAHGDIDLIVGT 724
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H L+ V + +LGL+++DEEQRFGV+ KEK+ K +VD L+LSATPIPRTL++ +
Sbjct: 725 HRLIQKDVSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHMGMLKI 784
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD SL++TPP RLPI+T + F V +AI+ ELDR GQ+FY+ RI+ LE LQ
Sbjct: 785 RDMSLLTTPPEGRLPIETVIQQFDPNLVATAIRKELDREGQIFYLHNRIENLESVKCMLQ 844
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P + I +AH S +LE+ E+F Q ++L+ T I+E+G+D+ NANTII+
Sbjct: 845 KLVPELSICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDRADM 904
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
+G++QLYQLRGRVGR+DK+A+AYL Y LSD A++RL + + +LG GF++A KDM
Sbjct: 905 YGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVALKDM 964
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G++Q+GD+ +VG DL+ ++L E++ ++ +H ++V ID+N +P
Sbjct: 965 EIRGVGNLLGKEQSGDIYSVGFDLYVQLLEEAIERL-QHAPNEQRIETV-IDLNYRGFIP 1022
Query: 502 SEYINHLENPMEMVNEAEKA 521
YI E ME+ + A
Sbjct: 1023 HTYIAADEIKMELYKKIAAA 1042
>gi|416999467|ref|ZP_11939989.1| transcription-repair coupling factor [Veillonella parvula
ACS-068-V-Sch12]
gi|333976757|gb|EGL77621.1| transcription-repair coupling factor [Veillonella parvula
ACS-068-V-Sch12]
Length = 1098
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/483 (46%), Positives = 321/483 (66%), Gaps = 15/483 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAE 81
NE PR ++K+ W + TK K +I + L+E+Y R + + P P E
Sbjct: 483 NEGDVPR-INKMGGRD-WAKVVTKAKKSIDDLADKLVEIYAQREITEGFAFLPDQPWQQE 540
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPYE T DQ +A +++ + ER PMDRL+ GDVGFGKTEVA+RAIF V +GKQ
Sbjct: 541 FEDAFPYEETEDQLQATAEIKESM-ERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQ 599
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
VL PT VLA+QHF RF+ + +KV +L+RF++ +EK++ L ++ G ++I++GT
Sbjct: 600 VAVLVPTTVLAQQHFQTFLNRFAPF-GVKVDVLNRFRTTSEKKQILKGVEDGSIDILIGT 658
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
HSLL +VV+ +LG+LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L G
Sbjct: 659 HSLLNKKVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGV 718
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
R+ S+I+TPP ERLP++T++ + + AIK EL RGGQV++V R+ + + L+
Sbjct: 719 REMSVINTPPEERLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELLE 778
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
A PG+ A+AHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D +
Sbjct: 779 SALPGLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADR 838
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEKD 440
GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA +D
Sbjct: 839 LGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-ILSEAAEKRLKAIEEFTELGAGFKLAMRD 897
Query: 441 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 500
+ IRG G + G QQ G++ +VG ++ ML E+++K K V+ D++I+P +
Sbjct: 898 LEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQN--------KEVERDVSIDPAI 949
Query: 501 PSE 503
E
Sbjct: 950 DLE 952
>gi|403069022|ref|ZP_10910354.1| transcription-repair coupling factor [Oceanobacillus sp. Ndiop]
Length = 1174
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 223/587 (37%), Positives = 364/587 (62%), Gaps = 22/587 (3%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
F +E K P+ L KL + W + K K + +++ + DL++LY R +K + ++ +
Sbjct: 554 FVGSEGKEPK-LYKLG-GSEWAKVKRKVQSSVEDIADDLIKLYAEREAKKGFAFSEDTEM 611
Query: 80 A-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF + FPY+ T DQ + ++++D+ E+E PMDRL+CGDVG+GKTEVA+RA F V+
Sbjct: 612 QREFESSFPYQETEDQLRCIEEIKQDM-EKERPMDRLLCGDVGYGKTEVAIRAAFKAVAD 670
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ +L PT +LA+QHF+ + ERF + I +GLLSRF++K ++ E L+ ++ G ++++
Sbjct: 671 GKQVAILVPTTILAQQHFETIRERFQDHA-INIGLLSRFRTKKQQTETLNGVRKGTVDVV 729
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL V Y +LGLL+VDEEQRFGVK KEKI K +VDVLTL+ATPIPRTL++++
Sbjct: 730 IGTHRLLSKDVEYRDLGLLIVDEEQRFGVKHKEKIKQLKTNVDVLTLTATPIPRTLHMSM 789
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ ++ + AI+ E+ RGGQVF++ R++ +++
Sbjct: 790 LGVRDLSVIETPPENRFPIQTYVMEYNPIFMREAIEREMARGGQVFFLYNRVENIDKVAR 849
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
L IA+AHGQ +LE + F +G +L+ T I+E+G+DI N NT+IV +
Sbjct: 850 DLGMLVGDARIAVAHGQMNENELENVIFGFLEGEYDVLVSTTIIETGVDIPNVNTLIVNN 909
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A
Sbjct: 910 ADRMGLSQLYQLRGRVGRSNRVAYAYFTYQKDKVLTEVAEKRLQAIKEFTELGSGFKIAM 969
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDINI 496
+D+ IRG G + G QQ G + +VG D++ +ML +++ K + P++ ++ +N+
Sbjct: 970 RDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLTDAIDARKAGKDIEEITPFEP-ELTLNL 1028
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAA-EQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
+ +P EYI + +++ + + + +QDI + + L ++G P + L
Sbjct: 1029 DAYIPDEYIKDEKQKIDIYKQFQGMSLKQDI---EELKDELIDRFGDYPTEVNNLFT--- 1082
Query: 556 VRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSL 602
+ K++A + V T NKK+ ++ D + ++ + L
Sbjct: 1083 -------VTSLKMHAKKERVESITERNKKIVVLIEDKRSQQIDGSKL 1122
>gi|257068518|ref|YP_003154773.1| transcription-repair coupling factor Mfd [Brachybacterium faecium DSM
4810]
gi|256559336|gb|ACU85183.1| transcription-repair coupling factor Mfd [Brachybacterium faecium DSM
4810]
Length = 1211
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/539 (40%), Positives = 335/539 (62%), Gaps = 11/539 (2%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFPYEPTPDQKK 96
W + K+K + AI+++ +L+ LY R Q P + P P E F + TPDQ
Sbjct: 593 WAKTKSKARKAIREIADELVRLYSAR--QSAPGHAFGPDTPWQRELEDSFEFVETPDQLV 650
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
DV+ D+ E+ PMDRLI GDVG+GKTE+A+RA F V GKQ VLAPT +LA+QH
Sbjct: 651 TIDDVKADM-EKSVPMDRLILGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLLAQQHL 709
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
D +ER++ +P + V LSRFQ+ A+ E ++ ++ G ++I++GTH LL V + +LGL
Sbjct: 710 DTFAERYTGFP-VTVRGLSRFQNPADSEATVEGLRDGSVDIVIGTHRLLTGNVRFKDLGL 768
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L+VDEEQRFGV+ KE + + + +VDVL++SATPIPRTL +A+TG R+ S+++TPP ER P
Sbjct: 769 LIVDEEQRFGVEHKETLKALRTNVDVLSMSATPIPRTLEMAVTGIRELSILATPPEERHP 828
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
+ T++ A ++V +AI+ EL R GQVFY+ R++ ++ L++ P + +AHG+
Sbjct: 829 VLTYVGAQEDKQVTAAIRRELLREGQVFYIHNRVEDIDRVAAHLRELVPDARVQVAHGKM 888
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
QLE + F + +L+CT IVE+GLDI NANT+IV++ +FGL+QL+QLRGRVGR
Sbjct: 889 NEHQLERVLIDFWERDFDVLVCTTIVETGLDISNANTLIVENADRFGLSQLHQLRGRVGR 948
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ + A+AY Y L++ A +RL L +LG G Q+A KD+ IRG G + G +Q+G
Sbjct: 949 SSERAYAYFLYNATKPLTELAHDRLTTLATNTDLGAGMQVAMKDLEIRGAGNLLGGEQSG 1008
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ VG DL+ M+ E+++ P K +++++ ++ +P +YI +E +
Sbjct: 1009 HIAGVGFDLYVRMVGEAVAAFRGEG--RAPEKEIRVELPLDAHVPHDYIGSERLRLEAYS 1066
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 575
+ +A +++ + Q L +YG P +E+LL R A GI ++ A GKM+
Sbjct: 1067 KL--SAVREVSEIAQIRAELTDRYGTPPAPVEVLLDVARFRIDARTAGIDEVQAQGKMI 1123
>gi|30260244|ref|NP_842621.1| transcription-repair coupling factor [Bacillus anthracis str. Ames]
gi|47525306|ref|YP_016655.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames
Ancestor']
gi|49183087|ref|YP_026339.1| transcription-repair coupling factor [Bacillus anthracis str. Sterne]
gi|65317513|ref|ZP_00390472.1| COG1197: Transcription-repair coupling factor (superfamily II
helicase) [Bacillus anthracis str. A2012]
gi|165872560|ref|ZP_02217192.1| transcription-repair coupling factor [Bacillus anthracis str. A0488]
gi|167635067|ref|ZP_02393384.1| transcription-repair coupling factor [Bacillus anthracis str. A0442]
gi|167641515|ref|ZP_02399763.1| transcription-repair coupling factor [Bacillus anthracis str. A0193]
gi|170688877|ref|ZP_02880079.1| transcription-repair coupling factor [Bacillus anthracis str. A0465]
gi|170707542|ref|ZP_02897995.1| transcription-repair coupling factor [Bacillus anthracis str. A0389]
gi|177655328|ref|ZP_02936857.1| transcription-repair coupling factor [Bacillus anthracis str. A0174]
gi|190568951|ref|ZP_03021852.1| transcription-repair coupling factor [Bacillus anthracis str.
Tsiankovskii-I]
gi|227812727|ref|YP_002812736.1| transcription-repair coupling factor [Bacillus anthracis str. CDC
684]
gi|229603766|ref|YP_002864705.1| transcription-repair coupling factor [Bacillus anthracis str. A0248]
gi|254682320|ref|ZP_05146181.1| transcription-repair coupling factor [Bacillus anthracis str.
CNEVA-9066]
gi|254735455|ref|ZP_05193163.1| transcription-repair coupling factor [Bacillus anthracis str. Western
North America USA6153]
gi|254744643|ref|ZP_05202322.1| transcription-repair coupling factor [Bacillus anthracis str. Kruger
B]
gi|254756348|ref|ZP_05208377.1| transcription-repair coupling factor [Bacillus anthracis str. Vollum]
gi|254762404|ref|ZP_05214246.1| transcription-repair coupling factor [Bacillus anthracis str.
Australia 94]
gi|386733921|ref|YP_006207102.1| transcription-repair coupling factor [Bacillus anthracis str. H9401]
gi|421510670|ref|ZP_15957559.1| transcription-repair coupling factor [Bacillus anthracis str. UR-1]
gi|421640743|ref|ZP_16081321.1| transcription-repair coupling factor [Bacillus anthracis str. BF1]
gi|30253565|gb|AAP24107.1| transcription-repair coupling factor [Bacillus anthracis str. Ames]
gi|47500454|gb|AAT29130.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames
Ancestor']
gi|49177014|gb|AAT52390.1| transcription-repair coupling factor [Bacillus anthracis str. Sterne]
gi|164711688|gb|EDR17233.1| transcription-repair coupling factor [Bacillus anthracis str. A0488]
gi|167510500|gb|EDR85898.1| transcription-repair coupling factor [Bacillus anthracis str. A0193]
gi|167529541|gb|EDR92291.1| transcription-repair coupling factor [Bacillus anthracis str. A0442]
gi|170127538|gb|EDS96412.1| transcription-repair coupling factor [Bacillus anthracis str. A0389]
gi|170667101|gb|EDT17862.1| transcription-repair coupling factor [Bacillus anthracis str. A0465]
gi|172080169|gb|EDT65262.1| transcription-repair coupling factor [Bacillus anthracis str. A0174]
gi|190559875|gb|EDV13859.1| transcription-repair coupling factor [Bacillus anthracis str.
Tsiankovskii-I]
gi|227004902|gb|ACP14645.1| transcription-repair coupling factor [Bacillus anthracis str. CDC
684]
gi|229268174|gb|ACQ49811.1| transcription-repair coupling factor [Bacillus anthracis str. A0248]
gi|384383773|gb|AFH81434.1| Transcription-repair coupling factor [Bacillus anthracis str. H9401]
gi|401819291|gb|EJT18472.1| transcription-repair coupling factor [Bacillus anthracis str. UR-1]
gi|403392122|gb|EJY89380.1| transcription-repair coupling factor [Bacillus anthracis str. BF1]
Length = 1176
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|423632851|ref|ZP_17608596.1| transcription-repair coupling factor [Bacillus cereus VD154]
gi|401258895|gb|EJR65076.1| transcription-repair coupling factor [Bacillus cereus VD154]
Length = 1176
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQYDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENIV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|423450073|ref|ZP_17426952.1| transcription-repair coupling factor [Bacillus cereus BAG5O-1]
gi|423542535|ref|ZP_17518925.1| transcription-repair coupling factor [Bacillus cereus HuB4-10]
gi|401127080|gb|EJQ34810.1| transcription-repair coupling factor [Bacillus cereus BAG5O-1]
gi|401168331|gb|EJQ75596.1| transcription-repair coupling factor [Bacillus cereus HuB4-10]
Length = 1176
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 332/527 (62%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETDDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E L +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETLKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVS--TIEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|312131279|ref|YP_003998619.1| transcriptioN-repair coupling factor [Leadbetterella byssophila DSM
17132]
gi|311907825|gb|ADQ18266.1| transcription-repair coupling factor [Leadbetterella byssophila DSM
17132]
Length = 1113
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 223/554 (40%), Positives = 338/554 (61%), Gaps = 20/554 (3%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAA 84
P T+SKL + WE RK+K K ++ + +L+ LY R ++ P + P N E +
Sbjct: 493 PPTMSKLG-SGEWEVRKSKVKKQVKDIAKELIALYAKR--REAPGFAFSPDNYLQIELES 549
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
F YE TPDQ A V+ D+ E+ PMDRL+CGDVGFGKTEVA+RA F GKQ V
Sbjct: 550 SFMYEDTPDQAAATAKVKADM-EKPYPMDRLVCGDVGFGKTEVAIRAAFKAAVDGKQVAV 608
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
L PT +LA QHF SER S P + V L+RF++ + + L +K G ++I++GT L
Sbjct: 609 LVPTTILALQHFRTFSERLSNMP-VTVDYLNRFKTTKDTNKTLKDVKEGKVDILIGTQKL 667
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264
L + + +LGLL++DEEQ+FGVK K++I K++VDVLTL+ATPIPRTL+ +L G RD
Sbjct: 668 LSKSLQFKDLGLLIIDEEQKFGVKAKDRIKELKLNVDVLTLTATPIPRTLHFSLMGARDL 727
Query: 265 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 324
S+I+TPPP R ++T + F +E + AI YEL+RGGQVF+V R+ ++ + + +
Sbjct: 728 SVIATPPPTRQTVETRVETFKEEIIRDAITYELNRGGQVFFVHNRVGDIDRIANIIYRLV 787
Query: 325 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 384
P I +AHGQ +LE+ M +F + ILI TNI+ESGLDI NANTII+ FGL
Sbjct: 788 PEAKIGVAHGQMEGEKLEKVMIRFIENETNILISTNIIESGLDIPNANTIIINQAHMFGL 847
Query: 385 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIR 444
+ L+Q+RGRVGR++K+A YL P S L+ A +R+ +E+ +LG GF++A +D+ IR
Sbjct: 848 SDLHQMRGRVGRSNKKAFCYLLTPPLSSLTTDARKRMQTIEQFSDLGDGFKVAMRDLDIR 907
Query: 445 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV----------PYKSVQIDI 494
G G + G +Q+G + ++G +++ ++L E++S++ E S+ + QI+
Sbjct: 908 GAGNLLGAEQSGFINDLGYEMYHKILDEAVSELKETEFRSLFEEELSEKNFKIEDCQIET 967
Query: 495 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
++ +P YI+++ + + N + +D L + SL ++G P +E L K +
Sbjct: 968 DMQILIPDAYISNIAERLSVYNTIDTLKTED--ELNKLKSSLIDRFGPLPDEVEELFKIV 1025
Query: 555 YVRRMAADIGITKI 568
+R A IG K+
Sbjct: 1026 RIRWKAEFIGFEKL 1039
>gi|229074115|ref|ZP_04207162.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18]
gi|229094775|ref|ZP_04225781.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29]
gi|229113728|ref|ZP_04243164.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3]
gi|407708004|ref|YP_006831589.1| Binding-protein-dependent transport system inner membrane component
[Bacillus thuringiensis MC28]
gi|423376672|ref|ZP_17353956.1| transcription-repair coupling factor [Bacillus cereus BAG1O-2]
gi|423439766|ref|ZP_17416672.1| transcription-repair coupling factor [Bacillus cereus BAG4X2-1]
gi|423462838|ref|ZP_17439606.1| transcription-repair coupling factor [Bacillus cereus BAG6O-1]
gi|423532194|ref|ZP_17508612.1| transcription-repair coupling factor [Bacillus cereus HuB2-9]
gi|423548766|ref|ZP_17525124.1| transcription-repair coupling factor [Bacillus cereus HuB5-5]
gi|423621427|ref|ZP_17597205.1| transcription-repair coupling factor [Bacillus cereus VD148]
gi|228669725|gb|EEL25131.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3]
gi|228688643|gb|EEL42515.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29]
gi|228709009|gb|EEL61135.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18]
gi|401174297|gb|EJQ81508.1| transcription-repair coupling factor [Bacillus cereus HuB5-5]
gi|401263456|gb|EJR69581.1| transcription-repair coupling factor [Bacillus cereus VD148]
gi|401641311|gb|EJS59031.1| transcription-repair coupling factor [Bacillus cereus BAG1O-2]
gi|402421809|gb|EJV54056.1| transcription-repair coupling factor [Bacillus cereus BAG4X2-1]
gi|402422966|gb|EJV55187.1| transcription-repair coupling factor [Bacillus cereus BAG6O-1]
gi|402465272|gb|EJV96954.1| transcription-repair coupling factor [Bacillus cereus HuB2-9]
gi|407385689|gb|AFU16190.1| Transcription-repair-coupling factor [Bacillus thuringiensis MC28]
Length = 1176
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 332/527 (62%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETDDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E L +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETLKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVS--TIEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|423299313|ref|ZP_17277338.1| transcription-repair coupling factor [Bacteroides finegoldii
CL09T03C10]
gi|408473122|gb|EKJ91644.1| transcription-repair coupling factor [Bacteroides finegoldii
CL09T03C10]
Length = 1123
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 233/570 (40%), Positives = 338/570 (59%), Gaps = 24/570 (4%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
++ E + PR L+KL T AWE+ K + K I+ + DL++LY R ++K Y P +
Sbjct: 490 YKGKEGEAPR-LNKLG-TGAWEKLKERTKSKIKDIARDLIKLYSQRRQEKGFSYSPDSFL 547
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ KA +DV+ D+ E + PMDRL+CGDVGFGKTEVA+RA F V+
Sbjct: 548 QRELEASFIYEDTPDQSKATIDVKADM-ESDRPMDRLVCGDVGFGKTEVAIRAAFKAVAD 606
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ VL PT VLA QHF +R P +V LSR ++ A+ + L +K G +NI+
Sbjct: 607 NKQVAVLVPTTVLAYQHFQTFRDRLKGLP-CRVEYLSRARTAAQSKAVLKGLKEGDVNIL 665
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +LG V + +LGLL+VDEEQ+FGV KEK+ K++VD LT++ATPIPRTL +L
Sbjct: 666 IGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSL 725
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+ISTPPP R PI+T + F++E + AI +E+ R GQVF+V RI L E
Sbjct: 726 MGARDLSVISTPPPNRYPIQTEVHTFNEEVITDAINFEMSRNGQVFFVNNRIANLPELKA 785
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+++ P +AI HGQ QLE+ + F +L+ T I+ESG+DI NANTII+
Sbjct: 786 MIERHIPDCRVAIGHGQMEPAQLEKIILDFVNYDYDVLLATTIIESGIDIPNANTIIINQ 845
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q FGL+ L+Q+RGRVGR++K+A YL P S L+ + RL A+E +LG G +A
Sbjct: 846 AQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTAEGKRRLQAIENFSDLGSGIHIAM 905
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVP---------- 486
+D+ IRG G + G +Q+G V ++G + + ++L E++ K DE +
Sbjct: 906 QDLDIRGAGNLLGAEQSGFVADLGYETYQKILSEAVHELKNDEFADLYAEEIKGEGQISG 965
Query: 487 ---YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGK 542
Q++ ++ LP+ Y+ M + E + ++D+ F L ++G
Sbjct: 966 EGFVDECQVESDLELLLPANYVTGSSERMLLYRELDSLTLDKDVAA---FRSRLEDRFGP 1022
Query: 543 EPYSMEILLKKLYVRRMAADIGITKIYASG 572
P E LL+ + +RR+AA +G KI+ G
Sbjct: 1023 VPPETEELLRIVPLRRLAARLGAEKIFLKG 1052
>gi|376263009|ref|YP_005149729.1| transcription-repair coupling factor Mfd [Clostridium sp. BNL1100]
gi|373947003|gb|AEY67924.1| transcription-repair coupling factor Mfd [Clostridium sp. BNL1100]
Length = 1174
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/547 (39%), Positives = 350/547 (63%), Gaps = 8/547 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
+E K PR +++L T W + K++ K ++Q++ +L++LY R K + ++ +
Sbjct: 562 SEGKTPR-VNRLG-GTEWAKTKSRVKESLQQLAAELIKLYAQRQSAKGHAFCEDTVWQRQ 619
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY+ T DQ K +++RD+ E E MDRL+CGDVG+GKTEVA+RA+F V GKQ
Sbjct: 620 FEELFPYQETDDQLKCIDEIKRDM-ESERLMDRLLCGDVGYGKTEVAIRAVFKSVMDGKQ 678
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
LAPT +LA+Q ++ +R S +P + V ++SRF++ E+++ + +K G+ +I++GT
Sbjct: 679 VAYLAPTTILAQQLYENFKKRMSDFP-VTVDVMSRFRTPTEQKKIVKSVKAGNTDILIGT 737
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL + + +LGLLVVDEEQRFGV KEK+ + K +VDVLTL+ATPIPRTL+++L G
Sbjct: 738 HRLLQKDIEFKDLGLLVVDEEQRFGVTHKEKLKTLKPNVDVLTLTATPIPRTLHMSLVGI 797
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S++ PP ER P++T++ ++ E + I E+ R GQVFY+ R++G++ ++
Sbjct: 798 RDISVLEDPPEERYPVQTYVMEYNMELIRDGIIREMARNGQVFYMYNRVRGIDIKAQEIR 857
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A+AHGQ ++LE+ M F G +L+CT I+ESGLD+ N NTIIV+D +
Sbjct: 858 TMIPEARVAVAHGQMNEKELEDVMYGFINGEYDVLVCTTIIESGLDMPNVNTIIVEDADR 917
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQ+RGRVGR+++ A+AY+ Y +LS+ A +RL A++E E G GF++A +D+
Sbjct: 918 MGLSQLYQIRGRVGRSNRLAYAYITYKKDKVLSEVAEKRLQAIKEFTEFGSGFRIAMRDL 977
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G +Q G + VG +++ ++L E++ ++ V + + + +D+N+N +
Sbjct: 978 EIRGAGNLLGPEQHGHLETVGYEMYCKLLDEAVQELSGKEVRTTD-EEMAVDLNVNAYID 1036
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
EYI+ E ++M + AA Q+ ++ + L +YG P +E L+ Y++ +A
Sbjct: 1037 DEYISSEEQKIDMYKKI--AAIQNENDVIDLRDELIDRYGDIPEEVENLMDIAYIKALAV 1094
Query: 562 DIGITKI 568
+ G I
Sbjct: 1095 ECGFIGI 1101
>gi|333394472|ref|ZP_08476291.1| transcription-repair coupling factor [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|420146318|ref|ZP_14653744.1| Transcription-repair coupling factor [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398401980|gb|EJN55385.1| Transcription-repair coupling factor [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 1173
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 236/641 (36%), Positives = 373/641 (58%), Gaps = 48/641 (7%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL+ELY R +K + P N E
Sbjct: 555 SEGKTPR-VNKLGGSE-WAKTKRKVSSKIEDIADDLIELYAQREAEKGYAFSPDNEYQRE 612
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++ D+ ER PMDRL+ GDVGFGKTEVALRAIF + GKQ
Sbjct: 613 FEDAFPYTETDDQLRSVAEIKHDM-ERPKPMDRLLVGDVGFGKTEVALRAIFKAIQDGKQ 671
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
A L PT +LA+QHFD + +RF+ +P ++V LLSRF++ + + L IK G ++++GT
Sbjct: 672 AAFLVPTTILAQQHFDTMMQRFADFP-VQVELLSRFRTAKQIKASLAAIKSGQADVVIGT 730
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L V + +LGLLVVDEEQRFGVK KE++ + + +VDVLT++ATPIPRTL +++ G
Sbjct: 731 HRILSKDVEFRDLGLLVVDEEQRFGVKAKERLKTLRSNVDVLTMTATPIPRTLNMSMVGV 790
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ + + S I+ EL RGGQVFY+ R++ +E + ++
Sbjct: 791 RDLSVIETPPANRYPVQTYVMEQNAGALRSGIERELARGGQVFYLHNRVEDIERTVANIE 850
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHGQ QLE T+ +F G +++ T I+E+G+++ N NT+ V+D
Sbjct: 851 ALVPEATVTYAHGQMTEAQLENTLYEFVHGQYDVIVTTTIIENGVNMPNVNTLFVEDADH 910
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GLAQLYQLRGRVGR+ + +AY Y +L++ + +RLAA+ + ELG GF++A +D+
Sbjct: 911 MGLAQLYQLRGRVGRSSRVGYAYFMYRQDKVLTEISEKRLAAIRDFTELGSGFKIAMRDL 970
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G+QQ G + +VG DL+ +ML +++++ V + ++D+ I LP
Sbjct: 971 SIRGAGNLLGKQQHGFIDSVGYDLYSQMLADAVAQKQGKAVQA--KSDAELDLGIEAYLP 1028
Query: 502 SEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
SEYI +E+ V E A+ L + L ++G P + LL
Sbjct: 1029 SEYITDQRQKIELYKRVRELSSPAD-----LEELQADLFDRFGDYPDPVAHLLA------ 1077
Query: 559 MAADIGITKIYASGKMV-----------------GMKTNMNKKVFKMMIDSMTSEVHRNS 601
IG+ K+YA +V G + + VFK +++ + +
Sbjct: 1078 ----IGLLKVYADQALVERIRHVDQQLRVKLSAKGTRQIAPEDVFK----ALSKTKLKAT 1129
Query: 602 LTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIK 642
+ +GD++ L+++ P+ + +W+ + L + L A+++
Sbjct: 1130 VKMDGDKLVITLIIQ-PKMRQPDWL-EELTQFLTGLAAIVQ 1168
>gi|375359215|ref|YP_005111987.1| putative transcription-repair coupling factor [Bacteroides fragilis
638R]
gi|301163896|emb|CBW23451.1| putative transcription-repair coupling factor [Bacteroides fragilis
638R]
Length = 1125
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 244/607 (40%), Positives = 352/607 (57%), Gaps = 31/607 (5%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
++ E + PR L+KL T AWE+ K + K I+ + DL++LY R ++K Y P +
Sbjct: 490 YKGKEGEAPR-LNKLG-TGAWEKLKERTKTKIKDIARDLIKLYSQRREEKGFAYSPDSFL 547
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ KA DV++D+ ER+ PMDRL+CGDVGFGKTEVA+RA F V+
Sbjct: 548 QRELEASFIYEDTPDQSKATADVKQDM-ERDMPMDRLVCGDVGFGKTEVAIRAAFKAVAD 606
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ VL PT VLA QHF +R P +V LSR ++ A+ + + ++ G +NI+
Sbjct: 607 NKQVAVLVPTTVLAYQHFQTFRDRLKGLP-CRVEYLSRARTAAQAKAVIKGLEAGDVNIL 665
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +LG V + +LGLL++DEEQ+FGV KEK+ K++VD LT++ATPIPRTL +L
Sbjct: 666 IGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSL 725
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+ISTPPP R PI+T + FS+E + AI +E+ R GQVF V RI L E
Sbjct: 726 MGARDLSVISTPPPNRYPIQTEVHTFSEEVIADAINFEMSRNGQVFLVNNRIANLPELKA 785
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+ + P IAI HGQ +LE+ + F +LI T I+ESG+DI NANTII+
Sbjct: 786 MILRHIPDCRIAIGHGQMEPAELEQIIFGFVNYDYDVLIATTIIESGIDIPNANTIIINQ 845
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q FGL+ L+Q+RGRVGR++K+A YL P S L+ +A RL A+E +LG G +A
Sbjct: 846 AQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAM 905
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHC-----------VISV 485
+D+ IRG G + G +Q+G + ++G + + ++L E++ K DE VIS
Sbjct: 906 QDLDIRGAGNMLGAEQSGFIADLGYETYQKILSEAVHELKTDEFAELYADELKGEGVISG 965
Query: 486 P--YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGK 542
+ Q++ ++ LP+ Y+ M + E + ++D+ F L ++G
Sbjct: 966 EEFVEECQVESDLELLLPANYVTGSSERMLLYRELDGLTLDRDVDA---FRSRLEDRFGP 1022
Query: 543 EPYSMEILLKKLYVRRMAADIGITKIY-ASGKMVGMKTN------MNKKVFKMMIDSMTS 595
P E LL+ + +RR+AA +G+ K++ G+M N F MID M
Sbjct: 1023 IPPETEELLRIVPLRRLAARLGVEKVFLKGGRMTLFFVNNAESPYYQSAAFGKMIDYMMK 1082
Query: 596 EVHRNSL 602
R L
Sbjct: 1083 YTRRCDL 1089
>gi|418719325|ref|ZP_13278525.1| transcription-repair coupling factor [Leptospira borgpetersenii str.
UI 09149]
gi|410744478|gb|EKQ93219.1| transcription-repair coupling factor [Leptospira borgpetersenii str.
UI 09149]
Length = 1176
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/559 (40%), Positives = 355/559 (63%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 569 TESPR-LDSLGKNT-WKKTKNRVQKAVETLAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 626
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 627 AEFEYEETPDQIEAIEAVKKDL-ESSIPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 685
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE E L G +++++GTH+
Sbjct: 686 MLAPTTILALQHYNTFKNRFRNYP-LRVELVSRFKTSAEIREILSDFSLGKIDMVIGTHA 744
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 745 ILSSKLKPKNLGLLIIDEEQRFGVNHKEAIKRFKNLVDVLTLTATPIPRTLHMALTGIRE 804
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ ++ + AI+ E+ R GQVFY+ R++ +E+ +L +
Sbjct: 805 LSIIATPPKNRQSVETYVLEEDEDLIAEAIRNEIQRDGQVFYLYNRVETIEQETKYLGEI 864
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 865 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 924
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AYL P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 925 LSQLYQIRGRVGRSDRKAFAYLLLPKDRVVTEQAEKRLNTIYEYQELGSGFKVAMRDLEI 984
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML E+++++ E V+ V + +N N +P
Sbjct: 985 RGAGNLLGKEQSGDIMEVGFDLYVRMLEEAIARIKGEEVVVEV---RTSVTLNTNFFIPE 1041
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G P ILL+K +R +A
Sbjct: 1042 TYISDTRQKIEFYKKFEGA--RDLQEIDEVYREMVERFGDPPEDARTFILLEK--IRTLA 1097
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + + +K+
Sbjct: 1098 SNLGFESVTETKDEIKLKS 1116
>gi|379729790|ref|YP_005321986.1| transcription-repair coupling factor [Saprospira grandis str. Lewin]
gi|378575401|gb|AFC24402.1| transcription-repair coupling factor [Saprospira grandis str. Lewin]
Length = 1122
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 225/559 (40%), Positives = 350/559 (62%), Gaps = 18/559 (3%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQ 85
+P ++ KL + AW K K K I+ + DL++LY R + +P + + E A
Sbjct: 501 KPPSVHKLG-SNAWANTKKKTKKKIKALAFDLIKLYAKRKSTQGIQFPPDGYLQNELEAS 559
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
F YE TPDQ KA V+ D+ + PMDRLICGDVGFGKTE+A+RA F V AGKQ +L
Sbjct: 560 FIYEDTPDQAKATEAVKEDMM-KPYPMDRLICGDVGFGKTEIAVRAAFKAVVAGKQVAIL 618
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA QH +R ++ D++V ++RF++ EK+E + +K G ++I++GTH++L
Sbjct: 619 VPTTILALQHAQTFRKRLGQF-DVQVEYINRFRTTKEKKEIYERLKAGKIDILIGTHAIL 677
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
+V + +LGLL++DEEQ+FGV KEK+ + K++VD LTL+ATPIPRTL +L RD S
Sbjct: 678 NKKVQFADLGLLIIDEEQKFGVASKEKLRNIKVNVDTLTLTATPIPRTLQFSLMAARDLS 737
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+TPPP R PI T L F+ E + AI+ E+ RGGQVF++ R+K LE+ L+Q P
Sbjct: 738 VINTPPPNRQPIHTELRTFNAELIQEAIEQEVSRGGQVFFIHNRVKSLEDMAAMLRQMMP 797
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
+D+A+AHGQ QLE+ + F +G ++L+CTNI+E+GLDI NANTII+ + FGL+
Sbjct: 798 NLDVAVAHGQMEPAQLEKRLMNFIKGYNEVLVCTNIIETGLDIANANTIIINNAHHFGLS 857
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
L+QLRGRVGR++K+A+ YL P S+LS + +RL LE+ ELG G +A +D+ IRG
Sbjct: 858 DLHQLRGRVGRSNKKAYCYLLAPPLSVLSSDSRKRLQTLEQFAELGSGIHIAMRDLDIRG 917
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV----------DEHCVISVPYKSVQIDIN 495
G I G +Q+G + N+G + + ++L E++ ++ +E + V I+++
Sbjct: 918 AGNILGGEQSGFIVNMGYETYQKILNETIQELKQGEYKELFKEEMEKKREFIQDVIIELD 977
Query: 496 INPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+PS+Y+ + + + + ++ E DI F+E + ++G P ++ L + L
Sbjct: 978 EEMLIPSDYVPIISERLALYQKMDELNNEADIKS---FSEKMIDRFGPLPEQVKQLFEAL 1034
Query: 555 YVRRMAADIGITKIYASGK 573
+R +A +G +++ GK
Sbjct: 1035 RLRWIARSLGFERLHFKGK 1053
>gi|310829353|ref|YP_003961710.1| transcription-repair coupling factor [Eubacterium limosum KIST612]
gi|308741087|gb|ADO38747.1| transcription-repair coupling factor [Eubacterium limosum KIST612]
Length = 1140
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 223/548 (40%), Positives = 341/548 (62%), Gaps = 7/548 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ K K + A++ M +L+ LY R K + P EF FPY T DQ +
Sbjct: 547 WQKAKNKAQKAVEDMADELIALYAKRRSMKGYAFSPDTSWQKEFEDDFPYIETEDQLRCV 606
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+++ D+ E E PMDRL+CGDVG+GKTEVALRA F V GKQ +L PT +LA+QH++
Sbjct: 607 EEIKADM-ESEIPMDRLLCGDVGYGKTEVALRAAFKAVMEGKQVAMLVPTTILAQQHYNT 665
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
V ERF KYP I V ++SRF++ ++++ L + G L++I+GTH LL V + +LGLL+
Sbjct: 666 VLERFRKYP-ISVEVISRFRTSGQQKKILGDLALGKLDMIIGTHRLLSQDVQFKDLGLLI 724
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV+ KEKI K +VDVLTLSATPIPRTL++++TG RD S+I PP R P++
Sbjct: 725 IDEEQRFGVRSKEKIKQLKQNVDVLTLSATPIPRTLHMSMTGVRDMSVIEEPPEGRRPVQ 784
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ A++ + AI EL RGGQV+YV R+ + E +Q P I +AHG+
Sbjct: 785 TYVMAYNPLIIQDAINRELGRGGQVYYVHNRVHDIHEVAIDVQSLVPDARIVVAHGRMSG 844
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE+ M F IL+ T IVESGLD++NANT+I+ + FGL+QLYQLRGRVGR+D
Sbjct: 845 SELEDIMVDFLNHDFDILVTTTIVESGLDVKNANTMIIDEGDHFGLSQLYQLRGRVGRSD 904
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+A+AY+ + K +L++ A +RL A+++ G GF++A +D+ IRG G I G +Q+G +
Sbjct: 905 AQAYAYVTHK-KEILTEVAQKRLKAIKDFTAFGSGFKVAMRDLEIRGAGNILGAEQSGHL 963
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+G +L+ +L E++SK + + + ++I+++I+ +P YI+ E ++ +
Sbjct: 964 FKIGYELYCRILEEAISKRMDGVEVETE-EPIRINLDIDGYIPERYISSEELKYDIYKKL 1022
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMK 578
+ I F E L ++G P + L+ ++ MA+ IGI +I G+ + +
Sbjct: 1023 --TFIKTIEDYDDFEEELLDRFGDIPNGVYNLMSIAMIKNMASSIGIKEIKQKGQFIYLT 1080
Query: 579 TNMNKKVF 586
+ K+VF
Sbjct: 1081 FSEKKEVF 1088
>gi|294792288|ref|ZP_06757436.1| transcription-repair coupling factor [Veillonella sp. 6_1_27]
gi|294457518|gb|EFG25880.1| transcription-repair coupling factor [Veillonella sp. 6_1_27]
Length = 1098
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 223/483 (46%), Positives = 321/483 (66%), Gaps = 15/483 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAE 81
NE PR ++K+ W + TK K +I + L+E+Y R + + P P E
Sbjct: 483 NEGDVPR-INKMGGRD-WSKVVTKAKKSIDDLADKLVEIYAQREITEGFAFLPDQPWQQE 540
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPYE T DQ +A +++ + ER PMDRL+ GDVGFGKTEVA+RAIF V +GKQ
Sbjct: 541 FEDAFPYEETEDQLQATAEIKESM-ERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQ 599
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
VL PT VLA+QHF RF+ + +KV +L+RF++ +EK++ L ++ G +++++GT
Sbjct: 600 VAVLVPTTVLAQQHFQTFLNRFAPF-GVKVDVLNRFRTTSEKKQILKGVEDGSIDVLIGT 658
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
HSLL +VV+ +LG+LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L G
Sbjct: 659 HSLLNKKVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGV 718
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
R+ S+I+TPP ERLP++T++ + + AIK EL RGGQV++V R+ + + L+
Sbjct: 719 REMSVINTPPEERLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELLE 778
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
A PG+ A+AHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D +
Sbjct: 779 SALPGLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADR 838
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEKD 440
GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA +D
Sbjct: 839 LGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-ILSEAAEKRLKAIEEFTELGAGFKLAMRD 897
Query: 441 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 500
+ IRG G + G QQ G++ +VG ++ ML E+++K K V+ D++I+P +
Sbjct: 898 LEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQN--------KEVERDVSIDPAI 949
Query: 501 PSE 503
E
Sbjct: 950 DLE 952
>gi|384177959|ref|YP_005563721.1| transcription-repair coupling factor [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324324043|gb|ADY19303.1| transcription-repair coupling factor [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 1176
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|383119158|ref|ZP_09939897.1| transcription-repair coupling factor [Bacteroides sp. 3_2_5]
gi|251946376|gb|EES86753.1| transcription-repair coupling factor [Bacteroides sp. 3_2_5]
Length = 1125
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 244/607 (40%), Positives = 352/607 (57%), Gaps = 31/607 (5%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
++ E + PR L+KL T AWE+ K + K I+ + DL++LY R ++K Y P +
Sbjct: 490 YKGKEGEAPR-LNKLG-TGAWEKLKERTKTKIKDIARDLIKLYSQRREEKGFAYSPDSFL 547
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ KA DV++D+ ER+ PMDRL+CGDVGFGKTEVA+RA F V+
Sbjct: 548 QRELEASFIYEDTPDQSKATADVKQDM-ERDMPMDRLVCGDVGFGKTEVAIRAAFKAVAD 606
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ VL PT VLA QHF +R P +V LSR ++ A+ + + ++ G +NI+
Sbjct: 607 NKQVAVLVPTTVLAYQHFQTFRDRLKGLP-CRVEYLSRARTAAQAKAVIKGLEAGDVNIL 665
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +LG V + +LGLL++DEEQ+FGV KEK+ K++VD LT++ATPIPRTL +L
Sbjct: 666 IGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSL 725
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+ISTPPP R PI+T + FS+E + AI +E+ R GQVF V RI L E
Sbjct: 726 MGARDLSVISTPPPNRYPIQTEVHTFSEEVIADAINFEMSRNGQVFLVNNRIANLPELKA 785
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+ + P IAI HGQ +LE+ + F +LI T I+ESG+DI NANTII+
Sbjct: 786 MILRHIPDCRIAIGHGQMEPAELEQIIFGFVNYDYDVLIVTTIIESGIDIPNANTIIINQ 845
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q FGL+ L+Q+RGRVGR++K+A YL P S L+ +A RL A+E +LG G +A
Sbjct: 846 AQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAM 905
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHC-----------VISV 485
+D+ IRG G + G +Q+G + ++G + + ++L E++ K DE VIS
Sbjct: 906 QDLDIRGAGNMLGAEQSGFIADLGYETYQKILSEAVHELKTDEFAELYADELKGEGVISG 965
Query: 486 P--YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGK 542
+ Q++ ++ LP+ Y+ M + E + ++D+ F L ++G
Sbjct: 966 EEFVEECQVESDLELLLPANYVTGSSERMLLYRELDGLTLDRDVDA---FRSRLEDRFGP 1022
Query: 543 EPYSMEILLKKLYVRRMAADIGITKIY-ASGKMVGMKTN------MNKKVFKMMIDSMTS 595
P E LL+ + +RR+AA +G+ K++ G+M N F MID M
Sbjct: 1023 IPPETEELLRIVPLRRLAARLGVEKVFLKGGRMTLFFVNNAESPYYQSAAFGKMIDYMMK 1082
Query: 596 EVHRNSL 602
R L
Sbjct: 1083 YTRRCDL 1089
>gi|49479988|ref|YP_034406.1| transcription-repair coupling factor [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49331544|gb|AAT62190.1| transcription-repair coupling factor [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 1178
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 575 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 634
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 635 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 693
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 694 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 752
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 753 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 812
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 813 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 872
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 873 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 932
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 933 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 992
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 993 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1046
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1047 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1091
>gi|52145163|ref|YP_081665.1| transcription-repair coupling factor [Bacillus cereus E33L]
gi|51978632|gb|AAU20182.1| transcription-repair coupling factor [Bacillus cereus E33L]
Length = 1176
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|228912793|ref|ZP_04076441.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228846853|gb|EEM91857.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 1176
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|229077333|ref|ZP_04210009.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-2]
gi|228705971|gb|EEL58283.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-2]
Length = 968
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 365 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 424
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 425 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 483
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 484 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 542
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 543 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 602
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 603 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 662
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 663 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 722
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 723 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 782
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 783 DSVGFDLYSQMLKDAIEQRRGTDGAENIV------NVEIDLEVDAYLPDAYISDSKQKIM 836
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 837 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 881
>gi|75759615|ref|ZP_00739701.1| Transcription-repair coupling factor [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74492906|gb|EAO56036.1| Transcription-repair coupling factor [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 1186
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 583 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 642
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 643 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 701
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 702 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTIDIVIGTHRILSKDVTYKDLGLLI 760
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 761 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 820
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 821 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 880
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 881 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 940
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 941 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 1000
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 1001 DSVGFDLYSQMLKDAIEQRRGTDGAENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1054
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1055 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1099
>gi|39995128|ref|NP_951079.1| transcription-repair coupling factor [Geobacter sulfurreducens PCA]
gi|409910602|ref|YP_006889067.1| transcription-repair coupling factor [Geobacter sulfurreducens KN400]
gi|39981890|gb|AAR33352.1| transcription-repair coupling factor [Geobacter sulfurreducens PCA]
gi|298504158|gb|ADI82881.1| transcription-repair coupling factor [Geobacter sulfurreducens KN400]
Length = 1157
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/470 (45%), Positives = 302/470 (64%), Gaps = 5/470 (1%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYEPTPDQKK 96
T+WE+ K K + A+Q+M +L+ +Y R L + P + EF A F YE T DQ
Sbjct: 567 TSWEKAKGKARAAVQEMAEELLRIYAARQLHEGHRFSPPDDLYREFEASFAYEETSDQLA 626
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A DV D+T PMDRL+CGDVG+GKTEVA+R F V GKQ VL PT VLA+QH
Sbjct: 627 AIEDVIADMTSNR-PMDRLVCGDVGYGKTEVAMRGAFKAVMDGKQVAVLVPTTVLAQQHL 685
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ R YP + + ++SRF++ E+++ L+ +K G +++I+GTH LL + V + +LGL
Sbjct: 686 ETFRARLGAYP-VTIEMVSRFRTPKEQKDILERVKKGTVDVIIGTHRLLQNDVTFKDLGL 744
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L+VDEEQRFGV KEK+ +K +VD+LTL+ATPIPRTLY++L G RD S+I TPP +RL
Sbjct: 745 LIVDEEQRFGVTHKEKLKKYKAAVDILTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLA 804
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
+KT ++ S E + A+ EL RGGQVF+V R++ + + L++ P IA+ HGQ
Sbjct: 805 VKTFVARTSDELIREAVLRELRRGGQVFFVHNRVQSIGAWYEHLRRIVPEAKIAVGHGQM 864
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE+ M F G +L+CT I+ESGLDI +ANT+IV FGLAQLYQLRGRVGR
Sbjct: 865 DEGELEKVMLGFMHGETNLLLCTTIIESGLDIPSANTLIVDRADTFGLAQLYQLRGRVGR 924
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ + A+AYL P + +S A ERL ++E ELG GF+LA D+ IRG G + G +Q+G
Sbjct: 925 SRQRAYAYLLIPGEGAISSDARERLRIIQELNELGAGFRLATHDLEIRGAGDLLGAKQSG 984
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
++ VG DL+ E+L E++ K+ V +I++ + +P +Y+
Sbjct: 985 NIAAVGFDLYTELLEEAVQKL--KGEEPVERVEPEINLRVPAFIPEDYVR 1032
>gi|311740779|ref|ZP_07714606.1| transcription-repair coupling factor [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311304299|gb|EFQ80375.1| transcription-repair coupling factor [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 1213
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 223/554 (40%), Positives = 334/554 (60%), Gaps = 16/554 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFP 87
LSK+ + W+ K K + A++++ +L+ELY R Q P + P NP AE FP
Sbjct: 581 LSKMGGSD-WKNTKKKARAAVREIAGELVELYAKR--QAAPGHQFSPDNPWQAEMEDNFP 637
Query: 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147
+ T DQ A V+ D+ E PMDR++ GDVG+GKTEVA+RA F V G Q VL P
Sbjct: 638 FVETEDQMLAIDAVKHDM-ESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGMQVAVLVP 696
Query: 148 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS 207
T +LA+QHFD SER + +P +K+ +LSRF SK E ++ + G ++I+VGTH LL +
Sbjct: 697 TTLLAQQHFDTFSERMTGFP-VKIEVLSRFTSKKEAKDIFKGLADGSVDIVVGTHRLLQT 755
Query: 208 RVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI 267
V + NLGL+VVDEEQRFGV+ KE I + K SVDVLT+SATPIPRTL +++ G R+ S I
Sbjct: 756 GVHWKNLGLIVVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTI 815
Query: 268 STPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGV 327
TPP +R P+ T++ A+ ++V +AI+ EL R GQ F++ ++ +E+ L+ P
Sbjct: 816 LTPPEDRHPVLTYVGAYEDKQVAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPEA 875
Query: 328 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 387
+ +AHGQ LE+T++ F +L+CT IVE+GLDI NANT+IV++ GL+QL
Sbjct: 876 RVVVAHGQMNEEVLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 935
Query: 388 YQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFG 447
+QLRGRVGR+ + +AY YP + L++ + +RLA + + +LG G +A KD+ +RG G
Sbjct: 936 HQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 995
Query: 448 TIFGEQQTGDVGNVGVDLFFEML------FESLSKVDEHCVISVPYKSVQIDININPRLP 501
+ G QQ+G + VG DL+ ++ F+SL++ + V K ++ID+ ++ +P
Sbjct: 996 NVLGAQQSGHIAGVGFDLYVRLVGEAVETFKSLARGEAPTVTDEGPKEIRIDLPVDAHIP 1055
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI+ +E+ + AA QD L E + ++G P + LL +R A
Sbjct: 1056 ESYIDSERLRLEVYRKL--AASQDNDDLKAVIEEMEDRFGPLPQEVLRLLSVARLRHQAR 1113
Query: 562 DIGITKIYASGKMV 575
GI+ I G +
Sbjct: 1114 RAGISDITVQGTRI 1127
>gi|42779132|ref|NP_976379.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987]
gi|206977924|ref|ZP_03238811.1| transcription-repair coupling factor [Bacillus cereus H3081.97]
gi|217957629|ref|YP_002336171.1| transcription-repair coupling factor [Bacillus cereus AH187]
gi|222093823|ref|YP_002527872.1| transcription-repair coupling factor [Bacillus cereus Q1]
gi|229136900|ref|ZP_04265528.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26]
gi|375282150|ref|YP_005102583.1| transcription-repair coupling factor [Bacillus cereus NC7401]
gi|423357803|ref|ZP_17335395.1| transcription-repair coupling factor [Bacillus cereus IS075]
gi|423374893|ref|ZP_17352230.1| transcription-repair coupling factor [Bacillus cereus AND1407]
gi|423572004|ref|ZP_17548220.1| transcription-repair coupling factor [Bacillus cereus MSX-A12]
gi|42735047|gb|AAS38987.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987]
gi|206743830|gb|EDZ55250.1| transcription-repair coupling factor [Bacillus cereus H3081.97]
gi|217067660|gb|ACJ81910.1| transcription-repair coupling factor [Bacillus cereus AH187]
gi|221237870|gb|ACM10580.1| transcription-repair coupling factor [Bacillus cereus Q1]
gi|228646565|gb|EEL02771.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26]
gi|358350671|dbj|BAL15843.1| transcription-repair coupling factor [Bacillus cereus NC7401]
gi|401073984|gb|EJP82392.1| transcription-repair coupling factor [Bacillus cereus IS075]
gi|401093375|gb|EJQ01476.1| transcription-repair coupling factor [Bacillus cereus AND1407]
gi|401199138|gb|EJR06048.1| transcription-repair coupling factor [Bacillus cereus MSX-A12]
Length = 1176
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|418739076|ref|ZP_13295469.1| transcription-repair coupling factor [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|410745774|gb|EKQ98684.1| transcription-repair coupling factor [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
Length = 1176
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/559 (40%), Positives = 355/559 (63%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 569 TESPR-LDSLGKNT-WKKTKDRVQKAVETLAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 626
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 627 AEFEYEETPDQIEAIEAVKKDL-ESSVPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 685
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE E L G +++++GTH+
Sbjct: 686 MLAPTTILALQHYNTFKNRFRNYP-LRVELVSRFKTSAEIREILSDFSLGKIDMVIGTHA 744
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 745 ILSSKLKPKNLGLLIIDEEQRFGVNHKEAIKRFKNLVDVLTLTATPIPRTLHMALTGIRE 804
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ ++ + AI+ E+ R GQVFY+ R++ +E+ +L +
Sbjct: 805 LSIIATPPKNRQSVETYVLEEDEDLIAEAIRNEIQRDGQVFYLYNRVETIEQETKYLGEI 864
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 865 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 924
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AYL P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 925 LSQLYQIRGRVGRSDRKAFAYLLLPKDRVVTEQAEKRLNTIYEYQELGSGFKVAMRDLEI 984
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML E+++++ E V+ V + +N N +P
Sbjct: 985 RGAGNLLGKEQSGDIMEVGFDLYVRMLEEAIARIKGEEVVVEV---RTSVTLNTNFFIPE 1041
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G P ILL+K +R +A
Sbjct: 1042 TYISDTRQKIEFYKKFEGA--RDLQEIDEVYREMVERFGDPPEDARTFILLEK--IRTLA 1097
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + + +K+
Sbjct: 1098 SNLGFESVTETKDEIKLKS 1116
>gi|118475824|ref|YP_892975.1| transcription-repair coupling factor [Bacillus thuringiensis str. Al
Hakam]
gi|118415049|gb|ABK83468.1| transcription-repair coupling factor [Bacillus thuringiensis str. Al
Hakam]
Length = 1207
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 604 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 663
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 664 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 722
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 723 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 781
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 782 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 841
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 842 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 901
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 902 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 961
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 962 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 1021
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 1022 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1075
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1076 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1120
>gi|47569902|ref|ZP_00240569.1| transcription-repair coupling factor [Bacillus cereus G9241]
gi|228983309|ref|ZP_04143523.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229194444|ref|ZP_04321248.1| Transcription-repair-coupling factor [Bacillus cereus m1293]
gi|423572804|ref|ZP_17548923.1| transcription-repair coupling factor [Bacillus cereus MSX-D12]
gi|423608122|ref|ZP_17584014.1| transcription-repair coupling factor [Bacillus cereus VD102]
gi|47553436|gb|EAL11820.1| transcription-repair coupling factor [Bacillus cereus G9241]
gi|228589034|gb|EEK47048.1| Transcription-repair-coupling factor [Bacillus cereus m1293]
gi|228776423|gb|EEM24775.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|401216728|gb|EJR23434.1| transcription-repair coupling factor [Bacillus cereus MSX-D12]
gi|401238619|gb|EJR45055.1| transcription-repair coupling factor [Bacillus cereus VD102]
Length = 1176
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|218895189|ref|YP_002443600.1| transcription-repair coupling factor [Bacillus cereus G9842]
gi|423565589|ref|ZP_17541864.1| transcription-repair coupling factor [Bacillus cereus MSX-A1]
gi|218545395|gb|ACK97789.1| transcription-repair coupling factor [Bacillus cereus G9842]
gi|401193666|gb|EJR00670.1| transcription-repair coupling factor [Bacillus cereus MSX-A1]
Length = 1176
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTIDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|406027393|ref|YP_006726225.1| transcription-repair coupling factor [Lactobacillus buchneri CD034]
gi|405125882|gb|AFS00643.1| transcription-repair coupling factor [Lactobacillus buchneri CD034]
Length = 1159
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/508 (40%), Positives = 325/508 (63%), Gaps = 9/508 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E K PR ++KL + W + K K I+ + +L++LY R +K YP++ ++
Sbjct: 532 YVSSEDKHPR-INKLG-GSEWAKTKAKVASKIEDIADELIDLYAKRSAEKGYAYPQDDSL 589
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
AEF A FPY TPDQ ++ +++RD+ E + PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 590 QAEFEAAFPYSETPDQLRSATEIKRDM-ETQHPMDRLLVGDVGYGKTEVALRAAFKAIEV 648
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + +RF +YP I V +LSRFQ+ + +E L +K G ++++
Sbjct: 649 GKQVAFLVPTTILAQQHYETMLDRFREYP-ITVRVLSRFQTAKQVKETLQGLKDGKVDVV 707
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL V +N+LGLL++DEEQRFGVK KE+I + VDVLTL+ATPIPRTL +++
Sbjct: 708 VGTHRLLSKDVKFNDLGLLIIDEEQRFGVKHKERIKEMRSDVDVLTLTATPIPRTLNMSM 767
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ RGGQVFY+ R+ +E+ ++
Sbjct: 768 MGVRDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMSRGGQVFYLHNRVSDIEKTVE 827
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+ P + HGQ Q+E+ + F G +L+ T I+E+G+DI N NT+ V++
Sbjct: 828 QISALVPSARVGYIHGQMSENQMEDILYDFINGEYDVLVTTTIIETGVDIPNVNTLFVEN 887
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+ GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG GF++A
Sbjct: 888 ADRMGLSQLYQLRGRIGRSSRVAYAYFMYKPNKVLTEIGEKRLEAIRDFTELGSGFKIAM 947
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-VQIDININ 497
+D+ IRG G + G+QQ G V +VG DL+ +ML ++++K + Y++ I++++
Sbjct: 948 RDLSIRGAGNLLGKQQHGFVDSVGYDLYTQMLSDAVAKKRGK---NFEYRTDATIELDLE 1004
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQD 525
LPS+YI + +E+ + +D
Sbjct: 1005 AYLPSDYIQDNQQKIELYKRIRQIENED 1032
>gi|303234885|ref|ZP_07321510.1| transcription-repair coupling factor [Finegoldia magna BVS033A4]
gi|302494003|gb|EFL53784.1| transcription-repair coupling factor [Finegoldia magna BVS033A4]
Length = 1168
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/546 (39%), Positives = 348/546 (63%), Gaps = 10/546 (1%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFA 83
K+P +L+KLS W + K K K ++ +M DL+ELY R K K + ++ EF
Sbjct: 563 VKKP-SLNKLS-GNDWAKAKQKAKKSVDEMADDLVELYSKRAKLKGYQFSQDTEWQREFE 620
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
FPYE T Q ++ +++ D+ E + PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 621 DSFPYEETDSQVRSIEEIKADM-ESDRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVA 679
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
L PT +LA+QHF+ + ERF YP I+V ++SRF S A +++ + ++ G ++++VGTH
Sbjct: 680 FLVPTTILAQQHFNTIKERFRDYP-IRVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHR 738
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L + + +LGLLV+DEEQRFGV+ KEK+ S + +VDVLTLSATPIPRTL + LTG RD
Sbjct: 739 ILSKNLKFKDLGLLVIDEEQRFGVRHKEKLKSMRENVDVLTLSATPIPRTLQMGLTGIRD 798
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF-LQQ 322
SL+ PP +R PI T+++ ++ + AI ELDRGGQ+++V RI+ +++ M+F L++
Sbjct: 799 MSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRELDRGGQIYFVYNRIEDIDQ-MEFKLKE 857
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P ++IAIAHG+ ++LE M F G +L+CT I+E+GLDIQN NT+I+ + +
Sbjct: 858 LVPELNIAIAHGRMNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKM 917
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQL+GR+GR+D+ + AY Y + L++ + +RL A+++ E G GF++A +D+
Sbjct: 918 GLSQLYQLKGRIGRSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRDLE 977
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
+RG G + GE Q G + +G DL+ ++L +++ + IS +V I+I +N +P
Sbjct: 978 LRGAGNLLGESQHGHIAKIGYDLYVKLLEQAVREAKGET-ISENKNTVMIEIKVNGYIPE 1036
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
+YI+ E +++ + ++D + + + L ++G P + ++ ++ A
Sbjct: 1037 DYISENETKIDIYKKIASIQDEDDYS--EIIDELIDRFGDVPKPIVNIMDVSIIKAFCAR 1094
Query: 563 IGITKI 568
+ I I
Sbjct: 1095 LSIESI 1100
>gi|196036345|ref|ZP_03103742.1| transcription-repair coupling factor [Bacillus cereus W]
gi|196041756|ref|ZP_03109046.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99]
gi|196047377|ref|ZP_03114590.1| transcription-repair coupling factor [Bacillus cereus 03BB108]
gi|218901255|ref|YP_002449089.1| transcription-repair coupling factor [Bacillus cereus AH820]
gi|225862106|ref|YP_002747484.1| transcription-repair coupling factor [Bacillus cereus 03BB102]
gi|228925307|ref|ZP_04088404.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228931556|ref|ZP_04094463.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228943860|ref|ZP_04106246.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229089185|ref|ZP_04220467.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42]
gi|229119716|ref|ZP_04248978.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201]
gi|229182448|ref|ZP_04309700.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1]
gi|301051789|ref|YP_003790000.1| transcription-repair coupling factor [Bacillus cereus biovar
anthracis str. CI]
gi|376264081|ref|YP_005116793.1| transcription-repair coupling factor [Bacillus cereus F837/76]
gi|423554013|ref|ZP_17530339.1| transcription-repair coupling factor [Bacillus cereus ISP3191]
gi|195990975|gb|EDX54946.1| transcription-repair coupling factor [Bacillus cereus W]
gi|196021779|gb|EDX60473.1| transcription-repair coupling factor [Bacillus cereus 03BB108]
gi|196027376|gb|EDX65993.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99]
gi|218538935|gb|ACK91333.1| transcription-repair coupling factor [Bacillus cereus AH820]
gi|225786910|gb|ACO27127.1| transcription-repair coupling factor [Bacillus cereus 03BB102]
gi|228601028|gb|EEK58596.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1]
gi|228663741|gb|EEL19319.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201]
gi|228694148|gb|EEL47829.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42]
gi|228815817|gb|EEM62052.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228828108|gb|EEM73835.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228834354|gb|EEM79894.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|300373958|gb|ADK02862.1| transcription-repair coupling factor [Bacillus cereus biovar
anthracis str. CI]
gi|364509881|gb|AEW53280.1| Transcription-repair coupling factor [Bacillus cereus F837/76]
gi|401182094|gb|EJQ89236.1| transcription-repair coupling factor [Bacillus cereus ISP3191]
Length = 1176
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|295136419|ref|YP_003587095.1| transcription-repair coupling factor [Zunongwangia profunda SM-A87]
gi|294984434|gb|ADF54899.1| transcription-repair coupling factor [Zunongwangia profunda SM-A87]
Length = 1126
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/552 (39%), Positives = 331/552 (59%), Gaps = 16/552 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQK 95
+ AW+ K K K ++ + +L+ELY R QK Y P + E A F YE TPDQ
Sbjct: 504 SNAWKNLKKKTKARVKHIAYNLIELYAKRRLQKGFAYGPDSYLQHELEASFIYEDTPDQS 563
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
A V++D+ E E PMDRL+CGDVGFGKTEVA+RA F V GKQ VL PT +LA QH
Sbjct: 564 TATEAVKKDM-ENERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQH 622
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
SER P + V L+RF++ E+ E L ++ G ++II+GTH L+ V + +LG
Sbjct: 623 HQTFSERLKDLP-VTVDYLNRFRTAKERRETLADLESGRVDIIIGTHQLVNKAVKFKDLG 681
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL+VDEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L RD S I+TPPP R
Sbjct: 682 LLIVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSLMAARDLSTITTPPPNRY 741
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
PI++++ FS+E + A+ YE+ RGGQVF++ RI+ ++E +Q+ P + I HGQ
Sbjct: 742 PIESNVIRFSEETIRDAVLYEIQRGGQVFFIHNRIENIKEVAGMIQRLVPDAKVGIGHGQ 801
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
++LE+ M F G +L+ T I+ESGLD+ NANTI + + FGL+ L+Q+RGRVG
Sbjct: 802 MEGKKLEKLMLSFINGEFDVLVSTTIIESGLDVTNANTIFINNANNFGLSDLHQMRGRVG 861
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R++K+A Y P S ++++A +R+ ALE+ ELG GF +A KD+ IRG G + G +Q+
Sbjct: 862 RSNKKAFCYFITPPYSAMTEEARKRMTALEQFSELGSGFNIAMKDLEIRGAGDLLGGEQS 921
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVP----------YKSVQIDININPRLPSEYI 505
G + +G D + ++L E++ ++ E+ + K QID + P +YI
Sbjct: 922 GFINEIGFDTYQKILAEAIEELKENEFKELYNEEDIEDKDFVKETQIDTDFEILFPDDYI 981
Query: 506 NHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
N++ + + + + ++ + R +G+ P S LL + ++ +A+ IG+
Sbjct: 982 NNIAERLNLYTKLNELKTEEELEKFETELIDR--FGELPVSAVDLLNSVRIKWIASKIGL 1039
Query: 566 TK-IYASGKMVG 576
+ I K++G
Sbjct: 1040 ERIIMKQNKLIG 1051
>gi|110639820|ref|YP_680030.1| transcription-repair coupling factor [Cytophaga hutchinsonii ATCC
33406]
gi|110282501|gb|ABG60687.1| transcription-repair coupling factor [Cytophaga hutchinsonii ATCC
33406]
Length = 1122
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 214/557 (38%), Positives = 338/557 (60%), Gaps = 22/557 (3%)
Query: 27 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI---AEFA 83
+P +SKL + WE +K+K K ++ + +L++LY R + P + P E
Sbjct: 497 QPPVMSKLG-SGDWENKKSKVKRQVKDIAKELIQLYAKR--KAAPGFAYTPDSFLQVELE 553
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
+ F YE TPDQ KA DV++D+ E PMDRL+CGDVGFGKTE+A+RA F V GKQ
Sbjct: 554 SSFMYEDTPDQSKATADVKKDM-ESPHPMDRLVCGDVGFGKTEIAVRAAFKAVCDGKQVA 612
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
VL PT +LA QH+ +R S++P + V ++RF++ + +E L +K G NI++GT
Sbjct: 613 VLVPTTILAMQHYKTFRDRLSRFPCV-VEYINRFKTAGQIKETLKRVKEGKTNILIGTQR 671
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
++ V + N+GLL++DEEQ+FGVK KEK+ FKI++D LTL+ATPIPRTL+ +L G RD
Sbjct: 672 VISKDVEFQNVGLLIIDEEQKFGVKVKEKLREFKINIDTLTLTATPIPRTLHFSLMGARD 731
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPPP R P+ T + F + + AI +EL RGGQVF+V R+K ++ +++
Sbjct: 732 LSIIATPPPNRQPVTTEIHVFDEAFIRDAISFELKRGGQVFFVHNRVKDIDGMAFLIKKL 791
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P + AHGQ +LEE M KF +G +L+ TNI+ESGLDI NANTII+ FG
Sbjct: 792 VPDARVTFAHGQMEGDKLEEVMLKFVEGEYDVLVSTNIIESGLDIPNANTIIINSAHMFG 851
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+ L+Q+RGRVGR++K+A YL P S L+ + +RL+ LEE +LG GF++A +D+ I
Sbjct: 852 LSDLHQMRGRVGRSNKKAFCYLLTPSVSALTGDSRKRLSVLEEFSDLGDGFKVAMRDLDI 911
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ------------ 491
RG G + G +Q+G + ++G D++ ++L E++ ++ E + +
Sbjct: 912 RGAGNMLGAEQSGFITDLGFDMYHKILDEAIQELKETEFADLFRDELDQQRLKNLVQDCV 971
Query: 492 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
I+ +++ +P Y+ ++ + + + + + L F + L ++G P + L
Sbjct: 972 IETDLSILIPDTYVTNISERLSLYSTIDNIKNE--TELTSFIQGLTDRFGPLPKEVIDLT 1029
Query: 552 KKLYVRRMAADIGITKI 568
+ + +R +A ++G K+
Sbjct: 1030 ETIKLRWLAQELGFEKL 1046
>gi|228898807|ref|ZP_04063090.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
4222]
gi|402562855|ref|YP_006605579.1| transcription-repair coupling factor [Bacillus thuringiensis HD-771]
gi|423364616|ref|ZP_17342085.1| transcription-repair coupling factor [Bacillus cereus VD022]
gi|434378696|ref|YP_006613340.1| transcription-repair coupling factor [Bacillus thuringiensis HD-789]
gi|228860832|gb|EEN05209.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
4222]
gi|401072728|gb|EJP81190.1| transcription-repair coupling factor [Bacillus cereus VD022]
gi|401791507|gb|AFQ17546.1| transcription-repair coupling factor [Bacillus thuringiensis HD-771]
gi|401877253|gb|AFQ29420.1| transcription-repair coupling factor [Bacillus thuringiensis HD-789]
Length = 1176
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTIDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|297616314|ref|YP_003701473.1| transcription-repair coupling factor [Syntrophothermus lipocalidus
DSM 12680]
gi|297144151|gb|ADI00908.1| transcription-repair coupling factor [Syntrophothermus lipocalidus
DSM 12680]
Length = 1081
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 233/561 (41%), Positives = 351/561 (62%), Gaps = 15/561 (2%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA--- 80
+ K PR LSKL T WE+ K + + +I++M +L+ +Y L+Q P + +P
Sbjct: 483 DDKEPR-LSKLGGTD-WEKTKNRVRESIREMAQELLRVYA--LRQTVPGFAFSPDTVWQK 538
Query: 81 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 140
EF F YE T DQ +A +V++D+ E PMDRLICGDVG+GKTEVALRA F V K
Sbjct: 539 EFEDAFEYEETADQIRAVAEVKKDM-ETPRPMDRLICGDVGYGKTEVALRAAFKAVMDHK 597
Query: 141 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 200
Q +L PT +LA+QH+ ERF P + + +LSRF++ +++ L+ +K G ++II+G
Sbjct: 598 QVAILVPTTILAEQHYQTCLERFKNTP-VVIEVLSRFRTPGQQKRILEDLKKGVIDIIIG 656
Query: 201 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 260
TH LL V + +LGLLVVDEE RFGV+QKE+I + K +VD L+LSATPIPRTL++ALTG
Sbjct: 657 THRLLSRDVRFKDLGLLVVDEEHRFGVRQKERIKALKETVDALSLSATPIPRTLHMALTG 716
Query: 261 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 320
RD S+I TPPP+R PI T++ ++++ + AI+ E++RGGQVF V RI+ +E + L
Sbjct: 717 LRDLSVIETPPPDRYPITTYVLEYNEDIIREAIRAEVERGGQVFAVHNRIQDIEMFRNHL 776
Query: 321 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 380
Q P V + +AHG+ +L + M++F ++L+CT I+ESGLD+ N NT+IV +
Sbjct: 777 QMLVPEVKMEVAHGRVPEDELADIMKRFLNQEFQVLVCTTIIESGLDMPNVNTLIVDEAD 836
Query: 381 QFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEK 439
+ GLAQLYQLRGRVGR+ + A+AY Y PDKS +++ A +RL A+ E ELG G ++A +
Sbjct: 837 RLGLAQLYQLRGRVGRSKRLAYAYFTYRPDKS-VTEAAQKRLNAIREFTELGSGMKIALR 895
Query: 440 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 499
D+ IRG G I G +Q G + VG DL+ +L E ++++ S +D+ I+
Sbjct: 896 DLEIRGAGNILGPEQHGYIAAVGFDLYCRLLEEETARLNGTAPRS--EGDTLLDVRIDAF 953
Query: 500 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 559
+P +Y+ + +++ A AA I + + L+ ++G P +E LL+ +R
Sbjct: 954 IPDDYVGDIGLKLQVYRRAMFAA--SIQEIDEIRAELKERFGSLPAPVENLLRLSRLRVC 1011
Query: 560 AADIGITKIYASGKMVGMKTN 580
A I I +G ++ ++ N
Sbjct: 1012 ARSKDIKSISTNGGVLQIRLN 1032
>gi|229142859|ref|ZP_04271302.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24]
gi|228640622|gb|EEK97009.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24]
Length = 1183
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 580 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 639
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 640 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 698
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 699 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 757
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 758 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 817
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 818 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 877
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 878 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 937
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 938 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 997
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 998 DSVGFDLYSQMLKDAIEQRRGTDGAENIV------NVEIDLEVDAYLPDAYISDSKQKIM 1051
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1052 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1096
>gi|418694946|ref|ZP_13255972.1| transcription-repair coupling factor [Leptospira kirschneri str. H1]
gi|409957105|gb|EKO16020.1| transcription-repair coupling factor [Leptospira kirschneri str. H1]
Length = 1181
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/559 (40%), Positives = 356/559 (63%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +AW++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 574 TESPR-LDSLG-KSAWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 631
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 632 AEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 690
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++VGTH+
Sbjct: 691 MLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHA 749
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 750 ILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRE 809
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ + + AI+ E+ R GQVFY+ R++ +EE ++L +
Sbjct: 810 LSIIATPPKNRQSVETYVLEEEDDLIADAIRNEIQRDGQVFYLYNRVETIEEETNYLSKL 869
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 870 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 929
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 930 LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 989
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N +P
Sbjct: 990 RGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNFFIPE 1046
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G+ P + ILL+K +R +A
Sbjct: 1047 TYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--IRTLA 1102
Query: 561 ADIGITKIYASGKMVGMKT 579
+ +G + + MK+
Sbjct: 1103 SSLGFESVTEMKDEIKMKS 1121
>gi|423658448|ref|ZP_17633747.1| transcription-repair coupling factor [Bacillus cereus VD200]
gi|401287781|gb|EJR93552.1| transcription-repair coupling factor [Bacillus cereus VD200]
Length = 1176
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENIV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|228937356|ref|ZP_04100003.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228976812|ref|ZP_04137225.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407]
gi|228782908|gb|EEM31073.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407]
gi|228822314|gb|EEM68295.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 1183
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 580 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 639
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 640 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 698
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 699 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTIDIVIGTHRILSKDVTYKDLGLLI 757
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 758 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 817
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 818 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 877
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 878 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 937
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 938 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 997
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 998 DSVGFDLYSQMLKDAIEQRRGTDGAENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1051
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1052 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1096
>gi|229027900|ref|ZP_04184055.1| Transcription-repair-coupling factor [Bacillus cereus AH1271]
gi|228733414|gb|EEL84241.1| Transcription-repair-coupling factor [Bacillus cereus AH1271]
Length = 1176
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 214/528 (40%), Positives = 334/528 (63%), Gaps = 18/528 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + +A +DI L E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSAMEDIEELQ---EEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|167646581|ref|YP_001684244.1| transcription-repair coupling factor [Caulobacter sp. K31]
gi|167349011|gb|ABZ71746.1| transcription-repair coupling factor [Caulobacter sp. K31]
Length = 1155
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 226/539 (41%), Positives = 329/539 (61%), Gaps = 15/539 (2%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYEPTPDQKK 96
AW+ RK+K K ++ M L+++ R LK P + EF A+FPYE T DQ
Sbjct: 553 AAWQGRKSKAKERLRVMAEGLIQIAAARQLKSVEETDPPHGVFDEFCARFPYEETDDQLS 612
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A DV DL + PMDRLICGDVGFGKTEVALRA F V +GKQ ++ PT +LA+QH+
Sbjct: 613 AIADVLEDLGSGK-PMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVCPTTLLARQHY 671
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+RF +P +KV LSR + E E + + +G L I+VGTH++L +V + +LGL
Sbjct: 672 KTFKDRFQGWP-VKVTRLSRLVTGKEAAETREGLANGQLEIVVGTHAILSKQVSFKDLGL 730
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
++VDEEQ FGVK KEK+ + V +LTL+ATPIPRTL +AL+G R+ S+I+TPP +RL
Sbjct: 731 VIVDEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIREMSIIATPPVDRLA 790
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T++S F + A+ E RGGQ +YV+PRIK LEE FL+ P V + HGQ
Sbjct: 791 VRTYISPFDPVTLREALLREKYRGGQAYYVVPRIKDLEEIEKFLRTQVPEVKYVVGHGQM 850
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
QLE+ M F +G +L+ T IVESGLDI +ANT+IV FGLAQLYQ+RGRVGR
Sbjct: 851 APTQLEDVMTAFYEGQYDVLLATTIVESGLDIPSANTLIVHRADMFGLAQLYQIRGRVGR 910
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ A+AYL P++ ++ A +RL L+ LG GFQLA D+ RG G + G++Q+G
Sbjct: 911 SKARAYAYLTTPNEKQITLSAEKRLKVLQSLDSLGAGFQLASHDLDQRGGGNLLGDEQSG 970
Query: 457 DVGNVGVDLFFEMLFESLSKVDEH----CVISVPYKSVQIDININPRLPSEYINHLENPM 512
+ +GV+L+ +ML ++++++ E +I S QI+ +P +Y+ L +
Sbjct: 971 HIKEIGVELYQQMLEDAVAELRERQGAEALIEDRGWSPQINTGAAVMIPDDYVPDLNVRL 1030
Query: 513 EM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+ ++EAEKAA+++ L ++G P + LLK + ++ + + + KI
Sbjct: 1031 SLYRRLSEAEKAADRE-----ALAAELIDRFGPLPPETDSLLKVVAIKGLCREANVAKI 1084
>gi|423526648|ref|ZP_17503093.1| transcription-repair coupling factor [Bacillus cereus HuB1-1]
gi|402455141|gb|EJV86925.1| transcription-repair coupling factor [Bacillus cereus HuB1-1]
Length = 1176
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTIDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|228919004|ref|ZP_04082384.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228840653|gb|EEM85914.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 1176
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENIV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|228970242|ref|ZP_04130902.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|384184136|ref|YP_005570032.1| transcription-repair coupling factor [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410672425|ref|YP_006924796.1| transcription-repair-coupling factor Mfd [Bacillus thuringiensis
Bt407]
gi|452196429|ref|YP_007476510.1| Transcription-repair coupling factor [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228789477|gb|EEM37396.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|326937845|gb|AEA13741.1| transcription-repair coupling factor [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409171554|gb|AFV15859.1| transcription-repair-coupling factor Mfd [Bacillus thuringiensis
Bt407]
gi|452101822|gb|AGF98761.1| Transcription-repair coupling factor [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 1176
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTIDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|212637897|ref|YP_002314417.1| transcription-repair coupling factor [Anoxybacillus flavithermus WK1]
gi|212559377|gb|ACJ32432.1| Transcription-repair coupling factor (helicase, mfd) [Anoxybacillus
flavithermus WK1]
Length = 1189
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/493 (43%), Positives = 321/493 (65%), Gaps = 7/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ + KL T W++ K K + ++Q + DLM+LY R K + P N E
Sbjct: 577 SEGKEPK-IYKLGGT-EWKKVKKKVESSVQDIAEDLMKLYAEREASKGYAFSPDNEMQRE 634
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ ++ +++RD+ E E PMDRL+CGDVG+GKTEVALRA F + GKQ
Sbjct: 635 FEAAFPYQETEDQLRSIREIKRDM-ESERPMDRLLCGDVGYGKTEVALRAAFKAIMDGKQ 693
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ V ERF YP I V LLSRF++K ++ E + +K G +++++GT
Sbjct: 694 VAFLVPTTILAQQHYETVRERFQGYP-IHVSLLSRFRTKKQQTETIQGLKDGTIDMVIGT 752
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V + +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL+++L G
Sbjct: 753 HRLLSKDVSFKDLGLLIIDEEQRFGVAHKEKIKQLKTNIDVLTLTATPIPRTLHMSLIGV 812
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ +S V AI+ E+ RGGQVF++ R++ ++ + +
Sbjct: 813 RDLSVIETPPENRFPVQTYVMEYSPIIVREAIEREMARGGQVFFLYNRVEDIDRKAEEIS 872
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 873 ALVPDARVTYAHGRMSEHELEAVMLAFLEGQYDVLVSTTIIETGVDIPNVNTLIVYDADK 932
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 933 MGLSQLYQLRGRVGRSNRIAYAYFTYRKDKVLNEIAEKRLQAIKEFTELGSGFKIAMRDL 992
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG +L+ +ML E++ + P++ V+ID+ ++ +P
Sbjct: 993 SIRGAGNLLGAQQHGFIDSVGFELYSQMLKEAIEE-KRGTKQEKPFE-VEIDLEVDAYIP 1050
Query: 502 SEYINHLENPMEM 514
YI + + +EM
Sbjct: 1051 EHYIANEQQKIEM 1063
>gi|30018324|ref|NP_829955.1| transcription-repair coupling factor [Bacillus cereus ATCC 14579]
gi|229125571|ref|ZP_04254604.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4]
gi|29893864|gb|AAP07156.1| Transcription-repair coupling factor [Bacillus cereus ATCC 14579]
gi|228657888|gb|EEL13693.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4]
Length = 1176
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENIV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|378981819|ref|YP_005230124.1| transcription-repair coupling factor [Treponema pallidum subsp.
pertenue str. CDC2]
gi|374678236|gb|AEZ58528.1| transcription-repair coupling factor [Treponema pallidum subsp.
pertenue str. CDC2]
Length = 1140
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 216/500 (43%), Positives = 322/500 (64%), Gaps = 7/500 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
NE +P L L + +WE RK + K +++ + L+ELY R + +PK+
Sbjct: 534 NEGNKPH-LDSLG-SKSWETRKARVKKSVENIAQKLVELYSLRKTTRGHAFPKDDEWQYA 591
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPYE T DQ+ +V++D+ E PMDRL+CGDVG+GKTE+A+RA F V GKQ
Sbjct: 592 FEAAFPYEETDDQRICIEEVKQDMQE-AVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQ 650
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+ L PT +L +QHF + RF +P +++ LSRF K+E+++ L + HG +++IVGT
Sbjct: 651 VVFLTPTTLLVEQHFRTICNRFKHFP-VRIEKLSRFVPKSEQKDILAKLAHGDIDLIVGT 709
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H L+ V + +LGL+++DEEQRFGV+ KEK+ K +VD L+LSATPIPRTL++ +
Sbjct: 710 HRLIQKDVSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHMGMLKI 769
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD SL++TPP RLPI+T + F V +AI+ ELDR GQ+FY+ RI+ LE LQ
Sbjct: 770 RDMSLLTTPPEGRLPIETVIQQFDPNLVATAIRKELDREGQIFYLHNRIENLESVKCMLQ 829
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P + I +AH S +LE+ E+F Q ++L+ T I+E+G+D+ NANTII+
Sbjct: 830 KLVPELSICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDRADM 889
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
+G++QLYQLRGRVGR+DK+A+AYL Y LSD A++RL + + +LG GF++A KDM
Sbjct: 890 YGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVALKDM 949
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G++Q+GD+ +VG DL+ ++L E++ ++ +H ++V ID+N +P
Sbjct: 950 EIRGVGNLLGKEQSGDIYSVGFDLYVQLLEEAIERL-QHAPNEQRIETV-IDLNYRGFIP 1007
Query: 502 SEYINHLENPMEMVNEAEKA 521
YI E ME+ + A
Sbjct: 1008 HMYIAADEIKMELYKKIAAA 1027
>gi|423387018|ref|ZP_17364273.1| transcription-repair coupling factor [Bacillus cereus BAG1X1-2]
gi|401630272|gb|EJS48078.1| transcription-repair coupling factor [Bacillus cereus BAG1X1-2]
Length = 1176
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTIDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|226309690|ref|YP_002769584.1| transcription-repair coupling factor [Brevibacillus brevis NBRC
100599]
gi|226092638|dbj|BAH41080.1| transcription-repair coupling factor [Brevibacillus brevis NBRC
100599]
Length = 1182
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 216/535 (40%), Positives = 337/535 (62%), Gaps = 12/535 (2%)
Query: 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKK 96
+ W+R K K + +++ + DL++LY R + P EF A FPY+ T DQ +
Sbjct: 573 SEWKRVKNKVQSSVKDIAEDLIKLYAARESAVGHTFSPDTTEQREFEAMFPYQETQDQLR 632
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
A +V+ D+ ER+ PMDRL+CGDVG+GKTEVA+RA F V GKQ VL PT +LA+QH+
Sbjct: 633 AISEVKADM-ERKRPMDRLVCGDVGYGKTEVAIRAAFKAVMDGKQVAVLVPTTILAQQHY 691
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERF++YP I+V +LSRF+S+ E+ L +K G +++++GTH LL + + LGL
Sbjct: 692 ETFRERFAEYP-IRVEVLSRFRSRKEQNATLKGLKEGTVDVVIGTHRLLSKDLTFRELGL 750
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L+VDEEQRFGV KEK+ K +VDV+TL+ATPIPRTL++++ G RD S+I TPP R P
Sbjct: 751 LIVDEEQRFGVSHKEKLKQIKTNVDVMTLTATPIPRTLHMSMLGVRDLSVIETPPENRFP 810
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T++ +S V AI+ E+ R GQVF++ +++G+E+ + + P IA+AHGQ
Sbjct: 811 VQTYVMDYSPALVREAIEREMARDGQVFFLYNQVQGIEQMAEQISMLVPDARIAVAHGQM 870
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
+LE + F +G +L+ T I+E+G+DI N NT+I+ + + GL+QLYQLRGRVGR
Sbjct: 871 NESELEGVILDFLEGNFDVLVSTTIIETGVDIPNVNTLIIYNADKMGLSQLYQLRGRVGR 930
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+ IRG G + G +Q G
Sbjct: 931 SNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHG 990
Query: 457 DVGNVGVDLFFEMLFESLSKVD---EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+ VG DL+ +ML E++ ++ +H +++ V+I++ ++ +PS YI +E
Sbjct: 991 FINTVGFDLYSQMLKEAIDELKGEVKHEIVT----PVEINLQLDAYIPSMYITDSRQKIE 1046
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
M + A + + E L ++G P ++ LL +R A IT+I
Sbjct: 1047 MYKKF--VAVSTLEDVDDLAEELLDRFGPVPKPVDNLLTISRLRVYALKHHITEI 1099
>gi|378972843|ref|YP_005221447.1| transcription-repair coupling factor [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|378973910|ref|YP_005222516.1| transcription-repair coupling factor [Treponema pallidum subsp.
pertenue str. Gauthier]
gi|374677166|gb|AEZ57459.1| transcription-repair coupling factor [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|374679305|gb|AEZ59596.1| transcription-repair coupling factor [Treponema pallidum subsp.
pertenue str. Gauthier]
Length = 1140
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 216/500 (43%), Positives = 322/500 (64%), Gaps = 7/500 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
NE +P L L + +WE RK + K +++ + L+ELY R + +PK+
Sbjct: 534 NEGNKPH-LDSLG-SKSWETRKARVKKSVENIAQKLVELYSLRKTTRGHAFPKDDEWQYA 591
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPYE T DQ+ +V++D+ E PMDRL+CGDVG+GKTE+A+RA F V GKQ
Sbjct: 592 FEAAFPYEETDDQRICIEEVKQDMQE-AVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQ 650
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+ L PT +L +QHF + RF +P +++ LSRF K+E+++ L + HG +++IVGT
Sbjct: 651 VVFLTPTTLLVEQHFRTICNRFKHFP-VRIEKLSRFVPKSEQKDILAKLAHGDIDLIVGT 709
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H L+ V + +LGL+++DEEQRFGV+ KEK+ K +VD L+LSATPIPRTL++ +
Sbjct: 710 HRLIQKDVSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHMGMLKI 769
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD SL++TPP RLPI+T + F V +AI+ ELDR GQ+FY+ RI+ LE LQ
Sbjct: 770 RDMSLLTTPPEGRLPIETVIQQFDPNLVATAIRKELDREGQIFYLHNRIENLESVKCMLQ 829
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P + I +AH S +LE+ E+F Q ++L+ T I+E+G+D+ NANTII+
Sbjct: 830 KLVPELSICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDRADM 889
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
+G++QLYQLRGRVGR+DK+A+AYL Y LSD A++RL + + +LG GF++A KDM
Sbjct: 890 YGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVALKDM 949
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G++Q+GD+ +VG DL+ ++L E++ ++ +H ++V ID+N +P
Sbjct: 950 EIRGVGNLLGKEQSGDIYSVGFDLYVQLLEEAIERL-QHAPNEQRIETV-IDLNYRGFIP 1007
Query: 502 SEYINHLENPMEMVNEAEKA 521
YI E ME+ + A
Sbjct: 1008 HMYIAADEIKMELYKKIAAA 1027
>gi|281412781|ref|YP_003346860.1| DEAD/DEAH box helicase domain protein [Thermotoga naphthophila
RKU-10]
gi|281373884|gb|ADA67446.1| DEAD/DEAH box helicase domain protein [Thermotoga naphthophila
RKU-10]
Length = 893
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 228/548 (41%), Positives = 355/548 (64%), Gaps = 14/548 (2%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE-FAAQFPYEPTPDQKKAF 98
W++ K + I+K + +L+ELY+ R + + P +P + E FA FPY TPDQ+++
Sbjct: 321 WKQTLKKVREDIEKKIRELVELYMKRQEAQGLSLPGDPELEEKFAESFPYIETPDQQQSI 380
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+V DL E PMDRL+CGD G GKTEVALRA F V +GKQ VL PT VLA+QH++
Sbjct: 381 EEVLYDLAS-EKPMDRLLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVLARQHYEN 439
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
ER + +KV LL ++ EK+E ++ +K G ++II+GTHSLL R+ +++LGL++
Sbjct: 440 FKERMETF-GVKVELLDSSRTAREKKEIIEKLKKGEIDIIIGTHSLLNERIEFSDLGLVI 498
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQ+FGV+QKE+ ++SV+VLTLSATPIPRTL++AL+G +D S+I++PPP R P+
Sbjct: 499 IDEEQKFGVEQKERFKKLRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVY 558
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
+++ +S + V A+ E++RGGQV YV R++ L E + L++ FP ++IA+AHG+
Sbjct: 559 VYVAEYSDDLVKGAVIREINRGGQVIYVHNRVEELPEVFEKLKRMFPELEIAVAHGKMSR 618
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
R +E + +F +G I +L+CT I+E+G+DI NANT+IV D ++GL+QLYQLRGRVGR+D
Sbjct: 619 RTMERIVHEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLSQLYQLRGRVGRSD 678
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A AY YP + S ALERL L+ G G Q+A KDM +RG G + G +Q G+V
Sbjct: 679 RRAFAYFLYPKGTPRS--ALERLKVLKSYTGFGSGLQIALKDMELRGVGDVLGLEQHGNV 736
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR---LPSEYINHLENPMEMV 515
+VG+ L+ E+L E++++ E + SV ++I P +P +Y+ +NP+E +
Sbjct: 737 VSVGLKLYNEILKETITRFREGRIEK--KHSVNVEIENPPGRFFIPEDYV---QNPVERL 791
Query: 516 NEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM 574
+ A+ L + E ++ ++G+ P +++L+ +R A+ +G+ KI M
Sbjct: 792 RFYRRLASSLAEEDLEEILEEMKDRFGEPPTEVKLLVDYFRLRIRASKLGVKKIRFDHSM 851
Query: 575 VGMKTNMN 582
V + N +
Sbjct: 852 VEIFPNRD 859
>gi|229067818|ref|ZP_04201136.1| Transcription-repair-coupling factor [Bacillus cereus F65185]
gi|228715302|gb|EEL67160.1| Transcription-repair-coupling factor [Bacillus cereus F65185]
Length = 1176
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENIV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|229188339|ref|ZP_04315388.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876]
gi|228595138|gb|EEK52908.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876]
Length = 1176
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENIV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|423410721|ref|ZP_17387841.1| transcription-repair coupling factor [Bacillus cereus BAG3O-2]
gi|423433495|ref|ZP_17410499.1| transcription-repair coupling factor [Bacillus cereus BAG4O-1]
gi|401109952|gb|EJQ17869.1| transcription-repair coupling factor [Bacillus cereus BAG3O-2]
gi|401111558|gb|EJQ19447.1| transcription-repair coupling factor [Bacillus cereus BAG4O-1]
Length = 1176
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENIV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|169824178|ref|YP_001691789.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328]
gi|167830983|dbj|BAG07899.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328]
Length = 1168
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 216/545 (39%), Positives = 348/545 (63%), Gaps = 10/545 (1%)
Query: 26 KRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAA 84
K+P +L+KLS W + K K K ++ +M DL+ELY R K K + ++ EF
Sbjct: 564 KKP-SLNKLS-GNDWAKAKQKAKKSVDEMADDLVELYSKRAKLKGYQFSQDTEWQREFED 621
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
FPYE T Q ++ +++ D+ E + PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 622 SFPYEETDSQVRSIEEIKADM-ESDRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVAF 680
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
L PT +LA+QHF+ + ERF YP I+V ++SRF S A +++ + ++ G ++++VGTH +
Sbjct: 681 LVPTTILAQQHFNTIKERFRDYP-IRVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHRI 739
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264
L + + +LGLLV+DEEQRFGV+ KEK+ S + +VDVLTLSATPIPRTL + LTG RD
Sbjct: 740 LSKNLKFKDLGLLVIDEEQRFGVRHKEKLKSMRENVDVLTLSATPIPRTLQMGLTGIRDM 799
Query: 265 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF-LQQA 323
SL+ PP +R PI T+++ ++ + AI ELDRGGQ+++V RI+ +++ M+F L++
Sbjct: 800 SLLEEPPEDRTPISTYVTEYNPSLIRDAIIRELDRGGQIYFVYNRIEDIDQ-MEFKLKEL 858
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P ++IAIAHG+ ++LE M F G +L+CT I+E+GLDIQN NT+I+ + + G
Sbjct: 859 VPELNIAIAHGRMNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKMG 918
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQL+GR+GR+D+ + AY Y + L++ + +RL A+++ E G GF++A +D+ +
Sbjct: 919 LSQLYQLKGRIGRSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRDLEL 978
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSE 503
RG G + GE Q G + +G DL+ ++L +++ + IS +V I+I +N +P +
Sbjct: 979 RGAGNLLGESQHGHIAKIGYDLYVKLLEQAVREAKGET-ISENKNTVIIEIKVNGYIPED 1037
Query: 504 YINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADI 563
YI+ E +++ + ++D + + + L ++G P + ++ ++ A +
Sbjct: 1038 YISENETKIDIYKKIASIQDEDDYS--EIIDELIDRFGDVPKPIVNIMDVSIIKAFCARL 1095
Query: 564 GITKI 568
I I
Sbjct: 1096 SIESI 1100
>gi|228905850|ref|ZP_04069748.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL 200]
gi|228853790|gb|EEM98549.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL 200]
Length = 1176
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTIDIVIGTHRILSKDVAYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|228989261|ref|ZP_04149254.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM
12442]
gi|228770471|gb|EEM19042.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM
12442]
Length = 1176
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/539 (39%), Positives = 336/539 (62%), Gaps = 8/539 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ + KL W++ KTK + ++Q + DL++LY R K Y P E
Sbjct: 558 SEGKNPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ
Sbjct: 616 FESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K G ++I++GT
Sbjct: 675 VAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNPGLIREAIERELARGGQIYFLYNRVEDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHG+ +LE M F G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPEARVTYAHGKMNESELESVMLSFLDGQHDVLVSTTIIETGVDIPNVNTLIVFDADR 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G +Q G + +VG DL+ +ML +++ + I V+ID+ ++ LP
Sbjct: 974 SIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRQGTQGIENTI-DVEIDLEVDAYLP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
YI+ + + M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1033 DAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|326202452|ref|ZP_08192321.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM
2782]
gi|325987570|gb|EGD48397.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM
2782]
Length = 1174
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 216/549 (39%), Positives = 353/549 (64%), Gaps = 11/549 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
+E K P+ ++KL T W + K + K ++Q++ +L++LY R K + ++ +
Sbjct: 562 SEGKTPK-VNKLG-GTEWAKTKNRVKESLQQLAAELIKLYAQRQSAKGHAFCEDTVWQRQ 619
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY+ T DQ K ++++D+ E E MDRL+CGDVG+GKTEVA+RA+F V GKQ
Sbjct: 620 FEELFPYQETDDQLKCIDEIKKDM-ESERLMDRLLCGDVGYGKTEVAIRAVFKSVMDGKQ 678
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
LAPT +LA+Q ++ +R S +P + V ++SRF++ AE+++ + +K G+ +I++GT
Sbjct: 679 VAYLAPTTILAQQLYENFKKRMSDFP-VTVDVMSRFRTPAEQKKIVKSVKAGNTDILIGT 737
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL + + +LGLLVVDEEQRFGV KEK+ + K +VDVLTL+ATPIPRTL+++L G
Sbjct: 738 HRLLQKDIEFKDLGLLVVDEEQRFGVTHKEKLKTLKPNVDVLTLTATPIPRTLHMSLVGI 797
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S++ PP ER P++T++ ++ E + I E+ R GQVFY+ R++G++ ++
Sbjct: 798 RDISVLEDPPEERYPVQTYVMEYNMELIRDGIIREMARNGQVFYMYNRVRGIDLKAQEIR 857
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A+AHGQ ++LE+ M F G +L+CT I+ESGLD+ N NTI+V+D +
Sbjct: 858 TMIPEARVAVAHGQMNEKELEDVMYGFINGEYDVLVCTTIIESGLDMPNVNTIVVEDADR 917
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQ+RGRVGR+++ A+AY+ Y +LS+ A +RL A++E E G GF++A +D+
Sbjct: 918 MGLSQLYQIRGRVGRSNRLAYAYITYKKDKVLSEVAEKRLQAIKEFTEFGSGFRIAMRDL 977
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G +Q G + VG +++ ++L E++ ++ V + + + +D+N+N +
Sbjct: 978 EIRGAGNLLGPEQHGHLETVGYEMYCKLLDEAVQELSGKEVRTTD-EEMAVDLNVNAYID 1036
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
EYI+ E ++M + AA Q+ ++ + L +YG P +E L+ Y++ +A
Sbjct: 1037 DEYISSEEQKIDMYKKI--AAIQNENDVIDLRDELIDRYGDIPEEVENLMDIAYIKALAV 1094
Query: 562 D---IGITK 567
+ IGIT+
Sbjct: 1095 ECGFIGITQ 1103
>gi|255037444|ref|YP_003088065.1| transcription-repair coupling factor [Dyadobacter fermentans DSM
18053]
gi|254950200|gb|ACT94900.1| transcription-repair coupling factor [Dyadobacter fermentans DSM
18053]
Length = 1115
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 225/573 (39%), Positives = 352/573 (61%), Gaps = 18/573 (3%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQF 86
P +SKL + WE +K+K K ++ + +L+ LY R + P+ K+ + E + F
Sbjct: 499 PPAMSKLG-SGEWEAKKSKVKKQLKDIAHELIALYAKRRQAPGFPFSKDNYLQVELESSF 557
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
YE TPDQ A +V+ D+ E+ PMDRL+CGDVGFGKTE+A+RA F V KQ VL
Sbjct: 558 IYEDTPDQATATANVKDDM-EKGHPMDRLVCGDVGFGKTEIAIRAAFKAVCDSKQVAVLV 616
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA QH+ SER + +P +VG ++RF+S E ++ L + G ++I++GTH +L
Sbjct: 617 PTTILAMQHYKTFSERLADFP-ARVGYINRFKSAKEIKQTLKEAEEGKIDILIGTHRILN 675
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
V + +LGLLVVDEEQ+FGVK K+++ +++VDVLTL+ATPIPRTL+ +L G RD S+
Sbjct: 676 KDVKFKDLGLLVVDEEQKFGVKAKDRLKEMRVNVDVLTLTATPIPRTLHFSLMGARDLSV 735
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPPP R P+ T + FS+E + AI +E+ RGGQVF+V R+ +E + + + P
Sbjct: 736 IATPPPNRQPVTTEVHTFSEEFIRDAISFEVQRGGQVFFVHNRVNDIESIANIILRLVPD 795
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
V I +AHGQ +LE+ M F +G IL+ TNI+ESG+DI NANTII+ FGL+
Sbjct: 796 VRIGVAHGQMEGDKLEKVMMNFIEGEYDILVSTNIIESGIDIANANTIIINSAHMFGLSD 855
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+Q+RGRVGR++++A YL P S L+ + +RL LEE +LG GF++A +D+ IRG
Sbjct: 856 LHQMRGRVGRSNRKAFCYLLTPSASTLASDSRKRLQTLEEFSDLGDGFKVAMRDLDIRGA 915
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEH-------CVISVPYKSV---QIDINI 496
G + G +Q+G V ++G +L+ +ML E++ ++ + V S+P V QI+ +
Sbjct: 916 GNLLGAEQSGFVNDLGYELYHKMLDEAVHELKSNEFKDLFEGVFSLPKNLVPDTQIETDF 975
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
+P +Y+ ++ + + + ++ L +F + + ++G P+ ++ LLK + +
Sbjct: 976 ATLIPDDYVKNISERLSLYTRLDNIGTEE--ELGKFEQEVLDRFGPIPHEVQDLLKTVRL 1033
Query: 557 RRMAADIGITKI-YASGKMVG-MKTNMNKKVFK 587
R A + K+ S M G T+ N + F+
Sbjct: 1034 RWEAEALQFEKLTLKSNTMKGYFVTSQNDEFFQ 1066
>gi|206972595|ref|ZP_03233538.1| transcription-repair coupling factor [Bacillus cereus AH1134]
gi|228950602|ref|ZP_04112737.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229176654|ref|ZP_04304059.1| Transcription-repair-coupling factor [Bacillus cereus 172560W]
gi|423427606|ref|ZP_17404637.1| transcription-repair coupling factor [Bacillus cereus BAG3X2-2]
gi|423438934|ref|ZP_17415915.1| transcription-repair coupling factor [Bacillus cereus BAG4X12-1]
gi|423506591|ref|ZP_17483180.1| transcription-repair coupling factor [Bacillus cereus HD73]
gi|206732497|gb|EDZ49676.1| transcription-repair coupling factor [Bacillus cereus AH1134]
gi|228606821|gb|EEK64237.1| Transcription-repair-coupling factor [Bacillus cereus 172560W]
gi|228809077|gb|EEM55561.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|401108001|gb|EJQ15937.1| transcription-repair coupling factor [Bacillus cereus BAG3X2-2]
gi|401115422|gb|EJQ23274.1| transcription-repair coupling factor [Bacillus cereus BAG4X12-1]
gi|402447416|gb|EJV79268.1| transcription-repair coupling factor [Bacillus cereus HD73]
Length = 1176
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENIV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|229039959|ref|ZP_04189723.1| Transcription-repair-coupling factor [Bacillus cereus AH676]
gi|229107740|ref|ZP_04237377.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15]
gi|296500886|ref|YP_003662586.1| transcription-repair coupling factor [Bacillus thuringiensis BMB171]
gi|423589352|ref|ZP_17565438.1| transcription-repair coupling factor [Bacillus cereus VD045]
gi|423644690|ref|ZP_17620307.1| transcription-repair coupling factor [Bacillus cereus VD166]
gi|423651374|ref|ZP_17626944.1| transcription-repair coupling factor [Bacillus cereus VD169]
gi|228675713|gb|EEL30920.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15]
gi|228727367|gb|EEL78560.1| Transcription-repair-coupling factor [Bacillus cereus AH676]
gi|296321938|gb|ADH04866.1| transcription-repair coupling factor [Bacillus thuringiensis BMB171]
gi|401224005|gb|EJR30565.1| transcription-repair coupling factor [Bacillus cereus VD045]
gi|401269474|gb|EJR75504.1| transcription-repair coupling factor [Bacillus cereus VD166]
gi|401278426|gb|EJR84359.1| transcription-repair coupling factor [Bacillus cereus VD169]
Length = 1176
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENIV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|260584473|ref|ZP_05852220.1| transcription-repair coupling factor [Granulicatella elegans ATCC
700633]
gi|260157991|gb|EEW93060.1| transcription-repair coupling factor [Granulicatella elegans ATCC
700633]
Length = 1174
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/560 (39%), Positives = 349/560 (62%), Gaps = 10/560 (1%)
Query: 14 IMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 73
I + ++ K P+ L+KL ++ W + K K + I+ + +L+ELY R +K +
Sbjct: 545 IKLVQKYVSSDAKVPK-LNKLG-SSEWAKTKRKVETKIEDIADELIELYAKRDAEKGYAF 602
Query: 74 PKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 132
K+ EF FPY T DQ ++ +++ D+ +++ PMDRL+ GDVG+GKTEVA+RA+
Sbjct: 603 SKDTVEQKEFEDAFPYSETQDQLRSIEEIKADM-QKDKPMDRLLVGDVGYGKTEVAMRAV 661
Query: 133 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 192
F + GKQA VL PT +LA+QH++ +RF+ YP K+GLLSRF++K E++E ++ ++
Sbjct: 662 FKALMDGKQAAVLVPTTILAEQHYENFVQRFADYP-FKIGLLSRFRTKKEQQETIEGLQK 720
Query: 193 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 252
G +++++GTH +L V + +LGLLVVDEEQRFGVK KE++ K VDVLTL+ATPIPR
Sbjct: 721 GQVDVVIGTHRILSKDVNFLDLGLLVVDEEQRFGVKHKERLKQLKSQVDVLTLTATPIPR 780
Query: 253 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 312
TL++++ G RD S+I TPP R P++T + + I+ EL RGGQVFY+ R++
Sbjct: 781 TLHMSMLGVRDLSVIETPPSNRYPVQTFVMEQQGITIKDGIERELARGGQVFYLYNRVET 840
Query: 313 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 372
+E+ D L+Q P + + HGQ LE + +F +G +L+ T I+E+G+DI N N
Sbjct: 841 IEKKADELRQLVPEARVGVIHGQMSETTLENILYQFIEGEYDVLVTTTIIETGVDIPNVN 900
Query: 373 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELG 431
T+ +++ GL+QLYQLRGRVGR+++ A+AYL Y PDK+ L++ +RL A+ + ELG
Sbjct: 901 TLFIENADHMGLSQLYQLRGRVGRSNRIAYAYLMYQPDKT-LTEVGEKRLQAMRDFTELG 959
Query: 432 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 491
GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++ K V ++ SV+
Sbjct: 960 SGFKIAMRDLSIRGAGNLLGKQQHGFIDSVGFDLYSQMLSEAVLKKQGKAVPTME-DSVE 1018
Query: 492 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551
ID+ ++ +P+ YI +EM + + + + ++G+ P + LL
Sbjct: 1019 IDLQVDAYIPATYIQDERQKIEMYKRIRSIDSMETYH--ELLDDFIDRFGEFPDEVSYLL 1076
Query: 552 KKLYVRRMAADIGITKIYAS 571
+ ++ A + IT I S
Sbjct: 1077 EVGMLKYFAEQLSITSIKRS 1096
>gi|423583703|ref|ZP_17559814.1| transcription-repair coupling factor [Bacillus cereus VD014]
gi|423633616|ref|ZP_17609269.1| transcription-repair coupling factor [Bacillus cereus VD156]
gi|401208335|gb|EJR15102.1| transcription-repair coupling factor [Bacillus cereus VD014]
gi|401283326|gb|EJR89221.1| transcription-repair coupling factor [Bacillus cereus VD156]
Length = 1176
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENIV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|229159227|ref|ZP_04287252.1| Transcription-repair-coupling factor [Bacillus cereus R309803]
gi|228624242|gb|EEK81043.1| Transcription-repair-coupling factor [Bacillus cereus R309803]
Length = 1176
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVS--TIEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|298483734|ref|ZP_07001908.1| transcription-repair coupling factor [Bacteroides sp. D22]
gi|336404934|ref|ZP_08585621.1| hypothetical protein HMPREF0127_02934 [Bacteroides sp. 1_1_30]
gi|298270151|gb|EFI11738.1| transcription-repair coupling factor [Bacteroides sp. D22]
gi|335940098|gb|EGN01967.1| hypothetical protein HMPREF0127_02934 [Bacteroides sp. 1_1_30]
Length = 1141
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 239/607 (39%), Positives = 349/607 (57%), Gaps = 31/607 (5%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
++ E + PR L+KL T AWE+ K + K I+ + DL++LY R ++K Y P +
Sbjct: 507 YKGKEGEAPR-LNKLG-TGAWEKLKERTKSKIKDIARDLIKLYSQRRQEKGFSYSPDSFL 564
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ KA +DV+ D+ E + PMDRL+CGDVGFGKTEVA+RA F V+
Sbjct: 565 QRELEASFIYEDTPDQSKATIDVKADM-ESDRPMDRLVCGDVGFGKTEVAIRAAFKAVAD 623
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ VL PT VLA QHF ER P +V LSR ++ A+ + L +K G + I+
Sbjct: 624 NKQVAVLVPTTVLAYQHFQTFRERLKGLP-CRVEYLSRARTAAQTKAVLKGLKDGDVGIL 682
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +LG V + +LGLL+VDEEQ+FGV KEK+ K++VD LT++ATPIPRTL +L
Sbjct: 683 IGTHRILGKDVQFKDLGLLIVDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSL 742
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+ISTPPP R PI+T + F++E + AI +E+ R GQVF+V RI L E
Sbjct: 743 MGARDLSVISTPPPNRYPIQTEVHTFNEEVITDAINFEMSRNGQVFFVNNRIANLPELKA 802
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+++ P +AI HGQ +LE+ + F +L+ T I+ESG+DI NANTII+
Sbjct: 803 MIERHIPDCRVAIGHGQMEPTELEKIILDFVNYDYDVLLATTIIESGIDIPNANTIIINQ 862
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q FGL+ L+Q+RGRVGR++K+A YL P S L+ + RL A+E +LG G +A
Sbjct: 863 AQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTTEGRRRLQAIENFSDLGSGIHIAM 922
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVP---------- 486
+D+ IRG G + G +Q+G V ++G + + ++L E++ K DE +
Sbjct: 923 QDLDIRGAGNLLGAEQSGFVADLGYETYQKILTEAVHELKTDEFAELYADEIKGEGQISG 982
Query: 487 ---YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGK 542
+ Q++ ++ LP+ Y+ M + E + ++D+ F L ++G
Sbjct: 983 EEFVEECQVESDLELLLPANYVTGSSERMLLYRELDGLTLDKDVEA---FRSRLEDRFGP 1039
Query: 543 EPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMN-------KKVFKMMIDSMTS 595
P E LL+ + +RR++A +G KI+ G + + N K F +ID M
Sbjct: 1040 VPRETEELLRIVPLRRLSARLGAEKIFLKGGRMTLFFVSNPDSPFYQSKAFGKVIDYMMK 1099
Query: 596 EVHRNSL 602
R L
Sbjct: 1100 YTRRCDL 1106
>gi|421130764|ref|ZP_15590956.1| transcription-repair coupling factor [Leptospira kirschneri str.
2008720114]
gi|410357867|gb|EKP05072.1| transcription-repair coupling factor [Leptospira kirschneri str.
2008720114]
Length = 1181
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 229/559 (40%), Positives = 355/559 (63%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 574 TESPR-LDSLGKST-WKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 631
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 632 AEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 690
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++VGTH+
Sbjct: 691 MLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHA 749
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 750 ILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRE 809
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ + + AI+ E+ R GQVFY+ R++ +EE +L +
Sbjct: 810 LSIIATPPKNRQSVETYVLEEEDDLIADAIRNEIQRDGQVFYLYNRVETIEEETSYLNKL 869
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 870 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 929
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 930 LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 989
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N +P
Sbjct: 990 RGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNFFIPE 1046
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G+ P + ILL+K +R +A
Sbjct: 1047 TYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--IRTLA 1102
Query: 561 ADIGITKIYASGKMVGMKT 579
+ +G + + MK+
Sbjct: 1103 SSLGFESVTEMKDEIKMKS 1121
>gi|421092923|ref|ZP_15553651.1| transcription-repair coupling factor [Leptospira borgpetersenii str.
200801926]
gi|410364299|gb|EKP15324.1| transcription-repair coupling factor [Leptospira borgpetersenii str.
200801926]
gi|456890188|gb|EMG01038.1| transcription-repair coupling factor [Leptospira borgpetersenii str.
200701203]
Length = 1176
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 229/559 (40%), Positives = 355/559 (63%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 569 TESPR-LDSLGKNT-WKKTKDRVQKAVETLAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 626
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 627 AEFEYEETPDQIEAIEAVKKDL-ESSIPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 685
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE E L G +++++GTH+
Sbjct: 686 MLAPTTILALQHYNTFKNRFRNYP-LRVELVSRFKTSAEIREILSDFSLGKIDMVIGTHA 744
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 745 ILSSKLKPKNLGLLIIDEEQRFGVNHKEAIKRFKNLVDVLTLTATPIPRTLHMALTGIRE 804
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ ++ + AI+ E+ R GQVFY+ R++ +E+ +L +
Sbjct: 805 LSIIATPPKNRQSVETYVLEEDEDLIAEAIRNEIQRDGQVFYLYNRVETIEQETKYLGEI 864
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 865 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 924
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AYL P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 925 LSQLYQIRGRVGRSDRKAFAYLLLPKDRVVTEQAEKRLNTIYEYQELGSGFKVAMRDLEI 984
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML E+++++ E V+ V + +N N +P
Sbjct: 985 RGAGNLLGKEQSGDIMEVGFDLYVRMLEEAIARIKGEEVVVEV---RTSVTLNTNFFIPE 1041
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G P ILL+K +R +A
Sbjct: 1042 TYISDTRQKIEFYKKFEGA--RDLQEIDEVYREMVERFGDPPEDARTFILLEK--IRTLA 1097
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + + +K+
Sbjct: 1098 SNLGFESVTETKDEIKLKS 1116
>gi|417925667|ref|ZP_12569086.1| transcription-repair coupling factor [Finegoldia magna
SY403409CC001050417]
gi|341591293|gb|EGS34501.1| transcription-repair coupling factor [Finegoldia magna
SY403409CC001050417]
Length = 1168
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 216/546 (39%), Positives = 348/546 (63%), Gaps = 10/546 (1%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EFA 83
K+P +L+KLS W + K K K ++ +M DL+ELY R K K + ++ EF
Sbjct: 563 VKKP-SLNKLS-GNDWAKAKQKAKKSVDEMADDLVELYSKRAKLKGYQFSQDTEWQREFE 620
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
FPYE T Q ++ +++ D+ E + PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 621 DSFPYEETDSQVRSIEEIKADM-ESDRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVA 679
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
L PT +LA+QHF+ + ERF YP I+V ++SRF S A +++ + ++ G ++++VGTH
Sbjct: 680 FLVPTTILAQQHFNTIKERFRDYP-IRVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHR 738
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L + + +LGLLV+DEEQRFGV+ KEK+ S + +VDVLTLSATPIPRTL + LTG RD
Sbjct: 739 ILSKNLKFKDLGLLVIDEEQRFGVRHKEKLKSMRENVDVLTLSATPIPRTLQMGLTGIRD 798
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF-LQQ 322
SL+ PP +R PI T+++ ++ + AI ELDRGGQ+++V RI+ +++ M+F L++
Sbjct: 799 MSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRELDRGGQIYFVYNRIEDIDQ-MEFKLKE 857
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P ++IAIAHG+ ++LE M F G +L+CT I+E+GLDIQN NT+I+ + +
Sbjct: 858 LVPELNIAIAHGRMNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKM 917
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQL+GR+GR+D+ + AY Y + L++ + +RL A+++ E G GF++A +D+
Sbjct: 918 GLSQLYQLKGRIGRSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRDLE 977
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
+RG G + GE Q G + +G DL+ ++L +++ + IS +V I+I +N +P
Sbjct: 978 LRGAGNLLGESQHGHIAKIGYDLYVKLLEQAVREAKGET-ISENKNTVIIEIKVNGYIPE 1036
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
+YI+ E +++ + ++D + + + L ++G P + ++ ++ A
Sbjct: 1037 DYISENETKIDIYKKIASIQDEDDYS--EIIDELIDRFGDVPKPIVNIMDVSIIKAFCAR 1094
Query: 563 IGITKI 568
+ I I
Sbjct: 1095 LSIESI 1100
>gi|345880931|ref|ZP_08832465.1| hypothetical protein HMPREF9431_01129 [Prevotella oulorum F0390]
gi|343921379|gb|EGV32097.1| hypothetical protein HMPREF9431_01129 [Prevotella oulorum F0390]
Length = 1160
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/459 (46%), Positives = 297/459 (64%), Gaps = 4/459 (0%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+R +T P LS L T AWER K K K I+ + DL++LY R ++K + K+ +
Sbjct: 524 YRRADTGEPPRLSTLG-TGAWERLKEKTKKRIKDIARDLIKLYAKRRQEKGFAFAKDSYL 582
Query: 80 A-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ KA +V+ D+ ER PMDRL+CGDVGFGKTEVA+RA F
Sbjct: 583 QHELEASFLYEDTPDQSKATQEVKADM-ERARPMDRLVCGDVGFGKTEVAVRAAFKAACD 641
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ VL PT VLA QHF S R P ++V LSR +S + L + G ++I+
Sbjct: 642 GKQVAVLVPTTVLAYQHFQTFSHRLKPMP-VRVDYLSRARSAKQTHAVLADLADGKIDIL 700
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH L+G +V +++LGLL++DEEQ+FGV KEK+ K +VD LT+SATPIPRTL +L
Sbjct: 701 IGTHKLIGKQVKWHDLGLLIIDEEQKFGVSTKEKLRKLKTNVDTLTMSATPIPRTLQFSL 760
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPPP R PI T LS F E + AI +E+ R GQV++V RI GL+E +
Sbjct: 761 MGARDMSIIRTPPPNRYPIHTELSTFGHEVIADAINFEMSRNGQVYFVHDRINGLQEIAN 820
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+++ P IAI HGQ +LEE + F +L+ T IVE+G+DI NANTII+ D
Sbjct: 821 LIKKYVPDCRIAIGHGQMKPDELEEIIMGFMNYDYDVLLSTTIVENGIDISNANTIIIND 880
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+ L+Q+RGRVGR++K+A YL P KS+L+ +A RL ALE ELG GF LA
Sbjct: 881 AHRFGLSDLHQMRGRVGRSNKKAFCYLLAPPKSVLTPEARRRLEALENFSELGSGFHLAM 940
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV 477
+D+ IRG G + G +Q+G + ++G + + ++L ++++++
Sbjct: 941 QDLDIRGAGNLLGAEQSGFMEDLGYETYQKILSQAVTEL 979
>gi|295093547|emb|CBK82638.1| transcription-repair coupling factor [Coprococcus sp. ART55/1]
Length = 1188
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 224/551 (40%), Positives = 338/551 (61%), Gaps = 9/551 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
+R E++ P+ +++L + W++ + K K + ++ L++LY R ++ Y P +
Sbjct: 563 YRSKESRAPK-INRLG-GSEWQKVRNKVKGHVSEVAQHLVKLYSERQAREGFAYSPDSEW 620
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF FPY T DQ KA DV+ D+ E MDRL+CGDVGFGKTEVA+RA F V
Sbjct: 621 QKEFEETFPYTETDDQLKAIEDVKADM-ESHKIMDRLVCGDVGFGKTEVAIRAAFKAVGD 679
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ L PT +LA+QH++ +ER YP + V LL RF ++ E + L +K G ++I+
Sbjct: 680 SKQVAYLVPTTILAEQHYETFTERMKDYP-VTVRLLCRFCTQKEIKSTLRELKEGKVDIV 738
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL V + NLGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL+++L
Sbjct: 739 IGTHRLLSKDVEFKNLGLLIIDEEQRFGVNHKEKIKEMKTNVDVLTLTATPIPRTLHMSL 798
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD SL+ PP +R PI+T++ + +E AI EL R GQV+YV R++G+E D
Sbjct: 799 VGIRDMSLLEEPPVDRRPIQTYVMEYDRELAREAIARELARHGQVYYVYNRVEGIERFAD 858
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
++ P ++ AHGQ R LE+ M +F + I +L+CT I+E+GLDI NANTII+ D
Sbjct: 859 DVRSLVPYANVEFAHGQMDGRTLEDIMYRFNKKEIDVLVCTTIIETGLDIPNANTIIIHD 918
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
FGLAQLYQLRGRVGR+D+ A A++FY ++S+ A +RL A++E +LG G ++++
Sbjct: 919 ANLFGLAQLYQLRGRVGRSDRSAFAFMFYRRNKMISEVAEKRLRAIKEYTDLGSGVKVSK 978
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
D+ IRG G++ GE Q+G+ VG DL+ +ML +++ ++ V Y++ +ID+ ++
Sbjct: 979 ADLNIRGAGSVLGESQSGNYEVVGYDLYCKMLNDAVRELRGEKVFQ-EYET-EIDLPVDS 1036
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P Y+ + +E+ +D + + L ++G P LL +R
Sbjct: 1037 FIPETYVKNDFVKLELCKRISLIKNEDEYN--DIVDELIDRFGDIPDETMNLLDVALLRA 1094
Query: 559 MAADIGITKIY 569
A IT+I+
Sbjct: 1095 NANICFITRIW 1105
>gi|284040349|ref|YP_003390279.1| transcription-repair coupling factor [Spirosoma linguale DSM 74]
gi|283819642|gb|ADB41480.1| transcription-repair coupling factor [Spirosoma linguale DSM 74]
Length = 1126
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/575 (37%), Positives = 354/575 (61%), Gaps = 22/575 (3%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQF 86
P T+SKL + WE++K++ + ++ + +L+ LY R Y ++ + AE + F
Sbjct: 510 PPTMSKLG-SQEWEQKKSRIRKQVKDIARELIALYAKRRTAPGYAYSRDSFLQAELESSF 568
Query: 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146
YE TPDQ KA DV+ D+ ER PMDRL+CGDVGFGKTE+A+RA F V+ KQ VL
Sbjct: 569 LYEDTPDQAKATNDVKDDM-ERPHPMDRLVCGDVGFGKTEIAIRAAFKAVTDNKQVAVLV 627
Query: 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 206
PT +LA QHF SER + +P +K+ ++RF++ + +E L + G + I++GTH ++
Sbjct: 628 PTTILAMQHFKTFSERMADFP-VKIEYINRFRTAGQIKEILKGVSSGEIGILIGTHRIVN 686
Query: 207 SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266
+ + +LGLLV+DEEQ+FGVK K+++ ++ VDVLTL+ATPIPRTL+ +L G RD S+
Sbjct: 687 KDIKFKDLGLLVIDEEQKFGVKTKDRLKEMRVEVDVLTLTATPIPRTLHFSLMGARDLSV 746
Query: 267 ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 326
I+TPPP R P+ T + AF++ + A+ E+ RGGQVF+V R+ +E + + + P
Sbjct: 747 IATPPPNRQPVTTEVHAFNEAIIRDAVSSEVRRGGQVFFVHNRVNDIESIGNLIMRLVPE 806
Query: 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 386
I +AHGQ +LE M +F +G +LI TNI+ESGLDI NANTI++ + FGL+
Sbjct: 807 ARIGVAHGQMDGERLERIMTRFIEGDYDVLISTNIIESGLDIPNANTILINNAHYFGLSD 866
Query: 387 LYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGF 446
L+Q+RGRVGR++++A YL P S+L+ A +RL LE+ +LG+GF++A +D+ IRG
Sbjct: 867 LHQMRGRVGRSNRKAFCYLLTPPPSVLTADARKRLQTLEDFSDLGEGFKIAMRDLDIRGA 926
Query: 447 GTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEH------------CVISVPYKSVQIDI 494
G + G +Q+G V ++G +++ ++L E++ ++ E+ +S+P ++ D+
Sbjct: 927 GNLLGAEQSGFVNDLGFEMYHKVLDEAVQELRENEFKDLFETKPGDLKLSLPDTVIETDL 986
Query: 495 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+ +P +Y++++ + + + Q+ + F + + ++G P +E L+K +
Sbjct: 987 QV--VIPEKYVSNISERLALYTRLDSL--QNDNEVQAFRQEVIDRFGPMPEEVENLIKMV 1042
Query: 555 YVRRMAADIGITKIYASGKMVG--MKTNMNKKVFK 587
VR A + + K+ ++ +N N + FK
Sbjct: 1043 NVRWKAEQLYLEKLTLKNNIMKGYFVSNGNDEFFK 1077
>gi|241890049|ref|ZP_04777347.1| transcription-repair coupling factor [Gemella haemolysans ATCC
10379]
gi|241863671|gb|EER68055.1| transcription-repair coupling factor [Gemella haemolysans ATCC
10379]
Length = 1183
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/463 (44%), Positives = 304/463 (65%), Gaps = 4/463 (0%)
Query: 9 CTCGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 68
++ + + + R L+KL T W++ K++ + I+ + DL++LY+ R
Sbjct: 526 VDINNMNYIQKYTASTDNRKPALNKLG-TKNWQKTKSRVRKEIEDISEDLIKLYIKRELS 584
Query: 69 KRPPYPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 127
Y + ++ AEF A F + PT DQ KA +++RD+ E+E PMDRL+CGDVGFGKTEV
Sbjct: 585 SGYAYSIDGSLQAEFEADFSFTPTEDQVKATEEIKRDM-EKERPMDRLLCGDVGFGKTEV 643
Query: 128 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 187
A+R F V+ KQ VL PT +LA+QH+D RF+ +P I + ++SRF+S + E
Sbjct: 644 AMRVAFKAVTDNKQVAVLVPTTLLAEQHYDNFVNRFANFP-INIEVVSRFKSAKDITEIC 702
Query: 188 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 247
++ G ++IIVGTH LL + Y +LGLL++DEEQRFGVK KEKI K +VDVLTLSA
Sbjct: 703 KKLEEGKIDIIVGTHKLLNDKFKYKDLGLLIIDEEQRFGVKHKEKIKHLKNTVDVLTLSA 762
Query: 248 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 307
TPIPRTL+++L G RD S+I TPP ER PI+T ++A +K + A+ E++RGGQVFYV
Sbjct: 763 TPIPRTLHMSLIGIRDLSVIETPPRERQPIQTFVTAQNKMVIKEAVMNEVNRGGQVFYVY 822
Query: 308 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 367
R++ ++E L++ P ++IA AHG+ R+LE M +LI T I+E+G+D
Sbjct: 823 NRVETIDEKYLELKRLLPDINIAYAHGRMSQRELENIMTDVIDRKYDMLISTTIIETGID 882
Query: 368 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 427
I N NT+IV+D +FGL+QLYQLRGRVGR+ +EA+AYL Y L++ + +RL+A++
Sbjct: 883 ISNVNTLIVEDADRFGLSQLYQLRGRVGRSSREAYAYLMYEPFKSLTENSEKRLSAIKNF 942
Query: 428 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML 470
LG GF++A +D+ IRG G + G +Q G + +VG L+ +ML
Sbjct: 943 TSLGSGFKIAMQDLSIRGAGDVLGGRQHGFIDSVGYTLYSQML 985
>gi|336392390|ref|ZP_08573789.1| transcription-repair coupling factor [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 1173
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 235/641 (36%), Positives = 373/641 (58%), Gaps = 48/641 (7%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL+ELY R +K + P N E
Sbjct: 555 SEGKTPR-VNKLGGSE-WAKTKRKVSSKIEDIADDLIELYAQREAEKGYAFSPDNEYQRE 612
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++ D+ ER PMDRL+ GDVGFGKTEVALRAIF + GKQ
Sbjct: 613 FEDAFPYTETDDQLRSVAEIKHDM-ERPKPMDRLLVGDVGFGKTEVALRAIFKAIQDGKQ 671
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
A L PT +LA+QHFD + +RF+ +P ++V LLSRF++ + + L IK G ++++GT
Sbjct: 672 AAFLVPTTILAQQHFDTMMQRFADFP-VQVELLSRFRTAKQIKASLAAIKSGQADVVIGT 730
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L V + +LGLLVVDEEQRFGVK KE++ + + +VDVLT++ATPIPRTL +++ G
Sbjct: 731 HRILSKDVEFRDLGLLVVDEEQRFGVKAKERLKTLRSNVDVLTMTATPIPRTLNMSMVGV 790
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ + + S I+ EL RGGQVFY+ R++ +E + ++
Sbjct: 791 RDLSVIETPPANRYPVQTYVMEQNAGALRSGIERELARGGQVFYLHNRVEDIERTVANIE 850
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHGQ QLE T+ +F G +++ T I+E+G+++ N NT+ V+D
Sbjct: 851 ALVPEATVTYAHGQMTEAQLENTLYEFVHGQYDVIVTTTIIENGVNMPNVNTLFVEDADH 910
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GLAQLYQLRGRVGR+ + +AY Y +L++ + +RLAA+ + E+G GF++A +D+
Sbjct: 911 MGLAQLYQLRGRVGRSSRVGYAYFMYRQDKVLTEISEKRLAAIRDFTEIGSGFKIAMRDL 970
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G+QQ G + +VG DL+ +ML +++++ V + ++D+ I LP
Sbjct: 971 SIRGAGNLLGKQQHGFIDSVGYDLYSQMLADAVAQKQGKAVQA--KSDAELDLGIEAYLP 1028
Query: 502 SEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
SEYI +E+ V E A+ L + L ++G P + LL
Sbjct: 1029 SEYITDQRQKIELYKRVRELSSPAD-----LEELQADLFDRFGDYPDPVAHLLA------ 1077
Query: 559 MAADIGITKIYASGKMV-----------------GMKTNMNKKVFKMMIDSMTSEVHRNS 601
IG+ K+YA +V G + + VFK +++ + +
Sbjct: 1078 ----IGLLKVYADQALVERIRHVDQQLRVKLSAKGTRQIAPEDVFK----ALSKTKLKAT 1129
Query: 602 LTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIK 642
+ +GD++ L+++ P+ + +W+ + L + L A+++
Sbjct: 1130 VKMDGDKLVITLIIQ-PKMRQPDWL-EELTQFLTGLAAIVQ 1168
>gi|228995444|ref|ZP_04155114.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17]
gi|228764305|gb|EEM13182.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17]
Length = 1183
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/540 (39%), Positives = 336/540 (62%), Gaps = 8/540 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ + KL W++ KTK + ++Q + DL++LY R K Y P E
Sbjct: 565 SEGKNPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQE 622
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ
Sbjct: 623 FESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQ 681
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K G ++I++GT
Sbjct: 682 VAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 740
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 741 HRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGV 800
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++ +E D +
Sbjct: 801 RDLSVIETPPENRFPVQTYVVEYNPGLIREAIERELARGGQIYFLYNRVEDIERKADEIS 860
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + AHG+ +LE M F G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 861 MLVPEARVTYAHGKMNESELESVMLSFLDGQHDVLVSTTIIETGVDIPNVNTLIVFDADR 920
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG GF++A +D+
Sbjct: 921 MGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDL 980
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G +Q G + +VG DL+ +ML +++ + I V+ID+ ++ LP
Sbjct: 981 SIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRQGTQGIENTI-DVEIDLEVDAYLP 1039
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI+ + + M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1040 DAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEIIDRFGDYPQEVGYLLQIANIKVLAT 1097
>gi|398333592|ref|ZP_10518297.1| transcription-repair coupling factor [Leptospira alexanderi serovar
Manhao 3 str. L 60]
Length = 1171
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 230/559 (41%), Positives = 355/559 (63%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 564 TESPR-LDSLGKST-WKKTKDRVQKAVETLAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 621
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 622 AEFEYEETPDQIEAIEAVKKDL-ESSVPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 680
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE E L G ++++VGTH+
Sbjct: 681 MLAPTTILALQHYNTFKNRFQNYP-LRVELVSRFKTSAEIREILSDFSLGKIDMVVGTHA 739
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 740 ILSSKLKPKNLGLLIIDEEQRFGVNHKEAIKRFKNLVDVLTLTATPIPRTLHMALTGIRE 799
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ ++ + AI+ E+ R GQVFY+ R++ +E+ +L +
Sbjct: 800 LSIIATPPKNRQSVETYVLEEDEDLIADAIRNEIQRDGQVFYLYNRVETIEQETKYLGEI 859
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 860 VPEVSIGILHGQMTEDKIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 919
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AYL P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 920 LSQLYQIRGRVGRSDRKAFAYLLLPKDRVVTEQAEKRLNTIYEYQELGSGFKVAMRDLEI 979
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ +ML E++++V E + V + +N N +P
Sbjct: 980 RGAGNLLGKEQSGDIMEVGFDLYVQMLEEAIARVKGEEVAVEV---RTSVALNTNFFIPE 1036
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G P +LL+K +R +A
Sbjct: 1037 TYISDTRQKIEFYKKFEGA--RDLQEIDEVYREMEERFGDPPEDARTFVLLEK--IRTLA 1092
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + MK+
Sbjct: 1093 SNLGFEFVTEMKDEIKMKS 1111
>gi|328956571|ref|YP_004373957.1| transcription-repair coupling factor [Carnobacterium sp. 17-4]
gi|328672895|gb|AEB28941.1| transcription-repair coupling factor [Carnobacterium sp. 17-4]
Length = 1173
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 234/620 (37%), Positives = 379/620 (61%), Gaps = 37/620 (5%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL T W + K K I+ + +L+ELY R ++ + P + E
Sbjct: 556 SEAKTPR-VNKLGGT-EWAKTKKKVATKIEDIADELIELYAAREQEVGYAFSPDDAYQEE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ + +++ D+ E++ PMDRL+ GDVG+GKTEVA+RAIF V GKQ
Sbjct: 614 FENAFPYTETEDQLSSTAEIKHDM-EQKKPMDRLLVGDVGYGKTEVAMRAIFKAVQEGKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
A L PT +LA+QH++ + +RF+ +P I++GLLSRF++K ++ E + +K G ++I+VGT
Sbjct: 673 AAFLVPTTILAQQHYETMLQRFADFP-IEIGLLSRFRTKKQQNETIAGLKKGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + + ++GLL+VDEEQRFGVK KEK+ K VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFQDIGLLIVDEEQRFGVKHKEKLKQLKAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ + + A++ E+ RGGQVFY+ R+ +E+ +D LQ
Sbjct: 792 RDLSVIETPPANRYPVQTYVMEQNLGAIREAVEREMARGGQVFYLYNRVATIEKKVDELQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
Q P I AHGQ QLE T+ +F +G +L+ T I+E+G+D+ N NT+ V++
Sbjct: 852 QLIPDARIGYAHGQMTEGQLENTLLQFIEGEYDMLVTTTIIETGVDMPNVNTLFVENADH 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSQLYQLRGRVGRSNRVAYAYFLYQPNKVLNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-VQIDININPRL 500
IRG G + G QQ G + +VG DL+ EML E++++ + + + K+ V+ID+ IN L
Sbjct: 972 SIRGAGNLLGAQQHGFIDSVGFDLYSEMLSEAVAR--KRGIDAKEEKTQVEIDLGINAYL 1029
Query: 501 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL------LKKL 554
P YI +E+ + + + +Q + L ++G+ Y+ E+ L K+
Sbjct: 1030 PGTYIEDERQKIEIYKRIRELRSHEQYVELQ--DDLIDRFGE--YADEVADLLTIGLIKM 1085
Query: 555 Y--------VRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 606
Y ++R ++ +T +VG +T ++VF+ S++ R ++ +
Sbjct: 1086 YGERALIETIKRTGDEVALT-----FSVVGTQTLPAEEVFR----SLSEVPLRANVAVKK 1136
Query: 607 DQIKAELLLELPREQLLNWI 626
D++ + L+L +E W+
Sbjct: 1137 DRLM--VTLQLKKEPTYQWL 1154
>gi|421108287|ref|ZP_15568827.1| transcription-repair coupling factor [Leptospira kirschneri str. H2]
gi|410006553|gb|EKO60304.1| transcription-repair coupling factor [Leptospira kirschneri str. H2]
Length = 1186
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 229/559 (40%), Positives = 355/559 (63%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +AW++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 579 TESPR-LDSLG-KSAWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 636
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 637 AEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 695
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++VGTH+
Sbjct: 696 MLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHA 754
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 755 ILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRE 814
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ + + AI+ E+ R GQVFY+ R++ +EE +L +
Sbjct: 815 LSIIATPPKNRQSVETYVLEEEDDLIADAIRNEIQRDGQVFYLYNRVETIEEETSYLSKL 874
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 875 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 934
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 935 LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 994
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N +P
Sbjct: 995 RGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNFFIPE 1051
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G+ P + ILL+K +R +A
Sbjct: 1052 TYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--IRTLA 1107
Query: 561 ADIGITKIYASGKMVGMKT 579
+ +G + + MK+
Sbjct: 1108 SSLGFESVTEMKDEIKMKS 1126
>gi|325295172|ref|YP_004281686.1| transcription-repair coupling factor [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065620|gb|ADY73627.1| transcription-repair coupling factor [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 1059
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 233/563 (41%), Positives = 350/563 (62%), Gaps = 22/563 (3%)
Query: 17 CYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 76
Y + + K P+ L KL T +W+ + K K ++ +L ELY R K +
Sbjct: 464 IYKYSGYKGKSPK-LDKLGGT-SWKNLERKIKASLINFAKELAELYKERKSAKGEKILGD 521
Query: 77 PAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135
+ EF +FPY+PTPDQ KA +V +D+ E E PMDRLICGDVGFGKTEVA+RA
Sbjct: 522 ENLLREFERRFPYKPTPDQLKAIREVYKDM-ESEKPMDRLICGDVGFGKTEVAMRAAMKA 580
Query: 136 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 195
V+ G+Q V+ PT +LA QH+ +RF +P +K+ +SRF++K E++E L+ +K+G +
Sbjct: 581 VTDGRQVAVIVPTTILADQHYRTFKKRFKGFP-VKIEAISRFKTKKEQKEILEKLKNGEI 639
Query: 196 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 255
+II+GTH L V + NLGLL++DEE RFGVK KEK+ K ++DVL LSATPIPRTLY
Sbjct: 640 DIIIGTHRLTQDDVEFKNLGLLIIDEEHRFGVKTKEKLTKIKKNLDVLYLSATPIPRTLY 699
Query: 256 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 315
AL+GFRD S+I TPP R K +S +S + +A++ EL R GQVF V I LE
Sbjct: 700 SALSGFRDISVIETPPVGRRGTKVVVSKYSDRILKTAVERELKRNGQVFIVQNDIDELEP 759
Query: 316 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 375
+++ FP + + I HGQ + ++E+ M KF +G IKILI T+I+ESGLDI +ANT+I
Sbjct: 760 LKIKVEEMFPNIPVDIVHGQMKTEKIEKVMHKFFEGDIKILIATSIIESGLDIPSANTLI 819
Query: 376 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 435
V ++FGL+QLYQLRGRVGR ++ + YL K L+ +A++RL A+++ +G GFQ
Sbjct: 820 VIGAERFGLSQLYQLRGRVGRGIEKGYCYLLTSSKGKLTPEAVKRLEAMKKVSPVGGGFQ 879
Query: 436 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCV-ISVPYKSVQIDI 494
LA KD+ IRG GT+ G +Q+G V +G+DL+ ++ E ++ +E V I+VP+++
Sbjct: 880 LAMKDLEIRGAGTLLGPKQSGFVNTIGLDLYLKLFEEVTTEKEEEDVKITVPFEAF---- 935
Query: 495 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 554
+P +YI + + + E K+ + + + + +G P + + K +
Sbjct: 936 -----IPEDYIEDTKERLRIYGELSKSENPE-----EILSEIEKVHGAIPDPLVNIFKIM 985
Query: 555 YVRRMAADIGITKI--YASGKMV 575
++++A +IGI +I SG++V
Sbjct: 986 KIKKLAKEIGIKEITMTPSGRLV 1008
>gi|423613680|ref|ZP_17589540.1| transcription-repair coupling factor [Bacillus cereus VD107]
gi|401241369|gb|EJR47760.1| transcription-repair coupling factor [Bacillus cereus VD107]
Length = 1176
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 GELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|269798420|ref|YP_003312320.1| transcription-repair coupling factor [Veillonella parvula DSM 2008]
gi|269095049|gb|ACZ25040.1| transcription-repair coupling factor [Veillonella parvula DSM 2008]
Length = 1098
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 224/483 (46%), Positives = 320/483 (66%), Gaps = 15/483 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAE 81
NE PR + K+ W + TK K +I + L+E+Y R + + P P E
Sbjct: 483 NEGDVPR-IHKMGGRD-WAKVVTKAKKSIDDLADKLVEIYAQREITEGFAFLPDQPWQQE 540
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPYE T DQ +A +++ + ER PMDRL+ GDVGFGKTEVA+RAIF V +GKQ
Sbjct: 541 FEDAFPYEETEDQLQATAEIKESM-ERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQ 599
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
VL PT VLA+QHF RF+ + +KV +L+RF++ +EK++ L ++ G ++I++GT
Sbjct: 600 VAVLVPTTVLAQQHFQTFLNRFAPF-GVKVDVLNRFRTTSEKKQILKGVEDGSIDILIGT 658
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
HSLL +VV+ +LG+LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L G
Sbjct: 659 HSLLNKKVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGV 718
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
R+ S+I+TPP ERLP++T++ + + AIK EL RGGQV++V R+ + + L+
Sbjct: 719 REMSVINTPPEERLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELLE 778
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
A PG+ A+AHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D +
Sbjct: 779 SALPGLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADR 838
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEKD 440
GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA +D
Sbjct: 839 LGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-ILSEAAEKRLKAIEEFTELGAGFKLAMRD 897
Query: 441 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 500
+ IRG G + G QQ G++ +VG ++ ML E+++K K V+ D++I+P +
Sbjct: 898 LEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQN--------KEVERDVSIDPAI 949
Query: 501 PSE 503
E
Sbjct: 950 DLE 952
>gi|331701922|ref|YP_004398881.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL
B-30929]
gi|329129265|gb|AEB73818.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL
B-30929]
Length = 1178
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/508 (40%), Positives = 325/508 (63%), Gaps = 9/508 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E K PR ++KL + W + K K I+ + +L++LY R +K YP++ ++
Sbjct: 551 YVSSEDKHPR-INKLG-GSEWAKTKAKVASKIEDIADELIDLYAKRSAEKGYAYPQDDSL 608
Query: 80 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
AEF A FPY TPDQ ++ +++RD+ E + PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 609 QAEFEAAFPYSETPDQLRSATEIKRDM-ETQHPMDRLLVGDVGYGKTEVALRAAFKAIEV 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + +RF +YP I V +LSRFQ+ + +E L +K G ++++
Sbjct: 668 GKQVAFLVPTTILAQQHYETMLDRFREYP-ITVRVLSRFQTAKQVKETLQGLKDGKVDVV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL V +N+LGLL++DEEQRFGVK KE+I + VDVLTL+ATPIPRTL +++
Sbjct: 727 VGTHRLLSKDVKFNDLGLLIIDEEQRFGVKHKERIKEMRSDVDVLTLTATPIPRTLNMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ + + AI+ E+ RGGQVFY+ R+ +E+ ++
Sbjct: 787 MGVRDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMSRGGQVFYLHNRVSDIEKTVE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+ P + HGQ Q+E+ + F G +L+ T I+E+G+DI N NT+ V++
Sbjct: 847 QISALVPSARVGYIHGQMSENQMEDILYDFINGEYDVLVTTTIIETGVDIPNVNTLFVEN 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+ GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG GF++A
Sbjct: 907 ADRMGLSQLYQLRGRIGRSSRVAYAYFMYKPNKVLTEIGEKRLEAIRDFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-VQIDININ 497
+D+ IRG G + G+QQ G V +VG DL+ +ML ++++K + Y++ I++++
Sbjct: 967 RDLSIRGAGNLLGKQQHGFVDSVGYDLYTQMLSDAVAKKRGK---NFEYRTDATIELDLE 1023
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQD 525
LPS+YI + +E+ + +D
Sbjct: 1024 AYLPSDYIQDNQQKIELYKRIRQIENED 1051
>gi|327403557|ref|YP_004344395.1| transcription-repair coupling factor [Fluviicola taffensis DSM 16823]
gi|327319065|gb|AEA43557.1| transcription-repair coupling factor [Fluviicola taffensis DSM 16823]
Length = 1113
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 221/556 (39%), Positives = 336/556 (60%), Gaps = 22/556 (3%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI---AEFAAQFPYEPTPD 93
T AW K K K I+++ DL++LY R Q P + +P E A F YE TPD
Sbjct: 503 TQAWATLKQKTKKRIKELAFDLIQLYAKRKSQ--PGFAFSPDTYLQNELEASFMYEDTPD 560
Query: 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 153
Q KA V+ D+ E+ETPMDRL+CGDVGFGKTE+A+RA F V+ KQ VL PT +L+
Sbjct: 561 QLKATQAVKEDM-EKETPMDRLVCGDVGFGKTEIAMRAAFKAVADSKQVAVLVPTTILSH 619
Query: 154 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNN 213
QH ERF +P V ++RF+S E L ++ G ++I+VGTH ++ +V + +
Sbjct: 620 QHARSFKERFKNFP-ANVDYINRFKSAKEITATLKKVESGEVDILVGTHKIVSDKVKFKD 678
Query: 214 LGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE 273
LGL+++DEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L G RD S+I+TPPP
Sbjct: 679 LGLIIIDEEQKFGVAVKDKLKTLKTTVDTLTLTATPIPRTLQFSLMGARDLSIINTPPPN 738
Query: 274 RLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAH 333
R P+ T + F++E + AI YE+ RGGQV++V R+ ++E + + PGV +AI H
Sbjct: 739 RQPVLTEVITFNEEAIRDAISYEVSRGGQVYFVNNRLANIKEIAGMISRLCPGVRVAIGH 798
Query: 334 GQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGR 393
GQ +QLE+ M F QG +LI T I+ESG+DI NANTII+ D FGL+ L+QLRGR
Sbjct: 799 GQMDGKQLEKVMMDFIQGEYDVLIATTIIESGIDISNANTIIINDSHMFGLSDLHQLRGR 858
Query: 394 VGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQ 453
VGR++K+ YL SLL+ +A +RL AL + +LG GF +A KD+ IRG G + G +
Sbjct: 859 VGRSNKKGFCYLISQPISLLTSEARKRLEALVQFSDLGSGFNIAMKDLDIRGAGNLLGGE 918
Query: 454 QTGDVGNVGVDLFFEMLFESLSKVDEHCV-----------ISVPY-KSVQIDININPRLP 501
Q+G + +G +++ ++L E++ ++ E + Y K ++ + R+
Sbjct: 919 QSGFISEIGFEMYQKILNEAMDELKEEEFKDLYDDRNTESMGAHYVKDCVLETDFELRIT 978
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
+YIN++ + + + + ++ + + + L ++G P ++ LL+ +R +A
Sbjct: 979 EDYINNVSERLSIYQDLDNLNTKE--EIEGYKQQLIDRFGPLPRVVKELLRSFELRWLAQ 1036
Query: 562 DIGITK-IYASGKMVG 576
+IG K + G M+G
Sbjct: 1037 EIGFEKLVIKQGSMIG 1052
>gi|228963154|ref|ZP_04124324.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228796539|gb|EEM43977.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 1067
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 464 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 523
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 524 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 582
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 583 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTIDIVIGTHRILSKDVTYKDLGLLI 641
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 642 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 701
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 702 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 761
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 762 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 821
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 822 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 881
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 882 DSVGFDLYSQMLKDAIEQRRGTDGAENTV------NVEIDLEVDAYLPDAYISDSKQKIM 935
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 936 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 980
>gi|408355421|ref|YP_006843952.1| transcription-repair coupling factor [Amphibacillus xylanus NBRC
15112]
gi|407726192|dbj|BAM46190.1| transcription-repair coupling factor [Amphibacillus xylanus NBRC
15112]
Length = 1174
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 226/544 (41%), Positives = 339/544 (62%), Gaps = 23/544 (4%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-E 81
+E K P+ L KL T W++ K+K K ++ + +L++LY R K + ++ + E
Sbjct: 559 SEAKEPK-LYKLG-GTEWKKVKSKVKSKVEDIADELIKLYAEREATKGYAFSEDTLLQRE 616
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPYE T DQ ++ ++++D+ +R PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 617 FEDAFPYEETEDQLRSIEEIKQDM-QRARPMDRLLCGDVGYGKTEVAIRAAFKAIMDGKQ 675
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QHF+ + ERF YP I+V LLSRF+++ E+++ L +K G ++++VGT
Sbjct: 676 VAFLVPTTILAQQHFETIIERFHDYP-IEVRLLSRFRTQKEQKDALKGLKEGVVDLVVGT 734
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL+VDEEQRFGVK KE+I K +VDVLTL+ATPIPRTL++++ G
Sbjct: 735 HRLLSKDVVYKDLGLLIVDEEQRFGVKHKERIKQIKTNVDVLTLTATPIPRTLHMSMLGV 794
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ ++ + AI+ EL RGGQVF++ R++ +E+ ++
Sbjct: 795 RDLSVIETPPANRFPIQTYVMEYNPVFIREAIERELGRGGQVFFLYNRVENIEQKAQEIE 854
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
G +A+AHGQ +LE M F +G +L+ T I+E+G+DI N NT+IV +
Sbjct: 855 NLVEGARVAVAHGQMNETELENIMLAFLEGEYDVLVSTTIIETGVDIPNVNTLIVDQADR 914
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG GF++A +D+
Sbjct: 915 MGLSQLYQLRGRVGRSNRIAYAYFTYQKNKVLSEVAEQRLQAIKEFTELGSGFKIAMRDL 974
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL- 500
IRG G I G +Q G + +VG DL+ +ML ES+ K K Q++ +I P L
Sbjct: 975 SIRGAGNILGAEQHGFIDSVGFDLYSDMLAESIEK--------RKLKQDQVEESIEPELS 1026
Query: 501 -------PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553
P YI+ + + M + Q+ + + L ++G P +E LL
Sbjct: 1027 LAIEAFIPDHYISDSKQKIAMYKRFQAVDSQE--GIDDIIDELTDRFGDYPKEVENLLTV 1084
Query: 554 LYVR 557
+R
Sbjct: 1085 CQIR 1088
>gi|365164153|ref|ZP_09360238.1| transcription-repair-coupling factor [Bacillus sp. 7_6_55CFAA_CT2]
gi|363613168|gb|EHL64690.1| transcription-repair-coupling factor [Bacillus sp. 7_6_55CFAA_CT2]
Length = 1121
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 518 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 577
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 578 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 636
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 637 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 695
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 696 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 755
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 756 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 815
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 816 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 875
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 876 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 935
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 936 DSVGFDLYSQMLKDAIEQRRGTDGAENIV------NVEIDLEVDAYLPDAYISDSKQKIM 989
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 990 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1034
>gi|260437494|ref|ZP_05791310.1| transcription-repair coupling factor [Butyrivibrio crossotus DSM
2876]
gi|292810127|gb|EFF69332.1| transcription-repair coupling factor [Butyrivibrio crossotus DSM
2876]
Length = 1177
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 228/557 (40%), Positives = 346/557 (62%), Gaps = 11/557 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEF 82
E +P+ L++L ++ W + KTK + A++++ L++LY R ++ + K+ P EF
Sbjct: 561 EGAKPK-LNRLG-SSEWTKTKTKVRGAVKQVADKLIKLYASRSARQGFAFSKDTPWQQEF 618
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPYEPT DQ A +++ D+ E MDRLICGDVGFGKTEVALRA F V KQ
Sbjct: 619 EELFPYEPTTDQLTAIEEIKTDM-ESTRIMDRLICGDVGFGKTEVALRAAFKAVQDNKQV 677
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
+ L PT +LAKQ F R + ++V +LSRF + E + ++ +K G ++++VGTH
Sbjct: 678 VYLCPTTILAKQIFTNFDSRMKDFG-VEVRMLSRFCTPKEAKNTIEGLKKGLVDVVVGTH 736
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
+L V + NLGLL++DEEQRFGV KEKI K SVDV+TLSATPIPRTL+++L G R
Sbjct: 737 KILSKDVSFKNLGLLIIDEEQRFGVAHKEKIKQMKESVDVITLSATPIPRTLHMSLIGIR 796
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S++ PP +R+PI+T ++ + +E V A+ EL RGGQV+YV ++ G++E + +
Sbjct: 797 DMSVLMEPPVDRIPIQTFVTEYDEEMVREAVNRELARGGQVYYVYNKVLGIDEITLNIAK 856
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P ++A AHGQ R+LE+ M F G I +L+ T I+E+GLDI N NTII+ D ++
Sbjct: 857 LVPEANVAFAHGQMSERELEKIMMDFINGDIDVLVSTTIIETGLDIPNVNTIIIHDANKY 916
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR + A+A+L Y +LS+ A +RL+A+ E +LG GF++A KD+
Sbjct: 917 GLSQLYQLRGRVGRTGRMAYAFLMYKKDKVLSEIAEKRLSAIREFTDLGSGFRIAMKDLE 976
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G + GE+Q G + VG DL+ +ML E++ ++ I Y++V +DI+++ +P+
Sbjct: 977 IRGAGNMLGEEQHGHMEAVGYDLYCKMLNEAVLELKGEGTIE-DYETV-VDIDVDAYIPA 1034
Query: 503 EYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI +++ A E+D L T+ L ++G P IL+ ++
Sbjct: 1035 TYIRSENQKLDIYKRIAAIETEED---LADMTDELIDRFGDIPKPAVILMSIALLKSKCH 1091
Query: 562 DIGITKIYASGKMVGMK 578
IT+I + K + ++
Sbjct: 1092 SNYITEIKGNRKEIKIR 1108
>gi|423456684|ref|ZP_17433534.1| transcription-repair coupling factor [Bacillus cereus BAG5X1-1]
gi|401128431|gb|EJQ36121.1| transcription-repair coupling factor [Bacillus cereus BAG5X1-1]
Length = 1176
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/528 (40%), Positives = 334/528 (63%), Gaps = 18/528 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 GELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + +A +DI L E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGISAIEDIEELQ---EEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|229170904|ref|ZP_04298507.1| Transcription-repair-coupling factor [Bacillus cereus MM3]
gi|228612570|gb|EEK69789.1| Transcription-repair-coupling factor [Bacillus cereus MM3]
Length = 1176
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/522 (40%), Positives = 330/522 (63%), Gaps = 6/522 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 GELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+VG DL+ +ML +++ + I +V+ID+ ++ LP YI+ + + M +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGIENTV-NVEIDLEVDAYLPDAYISDSKQKIMMYKQF 1049
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
+ I + + E + ++G P + LL+ ++ +A
Sbjct: 1050 RGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|449086720|ref|YP_007419161.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|449020477|gb|AGE75640.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 1121
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 518 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 577
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 578 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 636
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 637 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 695
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 696 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 755
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 756 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 815
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 816 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 875
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 876 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 935
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 936 DSVGFDLYSQMLKDAIEQRRGTDGAENIV------NVEIDLEVDAYLPDAYISDSKQKIM 989
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 990 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1034
>gi|418676945|ref|ZP_13238223.1| transcription-repair coupling factor [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418687906|ref|ZP_13249063.1| transcription-repair coupling factor [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418742689|ref|ZP_13299059.1| transcription-repair coupling factor [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421090691|ref|ZP_15551482.1| transcription-repair coupling factor [Leptospira kirschneri str.
200802841]
gi|400322845|gb|EJO70701.1| transcription-repair coupling factor [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410000573|gb|EKO51202.1| transcription-repair coupling factor [Leptospira kirschneri str.
200802841]
gi|410737330|gb|EKQ82071.1| transcription-repair coupling factor [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410750064|gb|EKR07047.1| transcription-repair coupling factor [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 1181
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 229/559 (40%), Positives = 355/559 (63%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 574 TESPR-LDSLGKST-WKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 631
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 632 AEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 690
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++VGTH+
Sbjct: 691 MLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVVGTHA 749
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 750 ILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALTGIRE 809
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ + + AI+ E+ R GQVFY+ R++ +EE +L +
Sbjct: 810 LSIIATPPKNRQSVETYVLEEEDDLIADAIRNEIQRDGQVFYLYNRVETIEEETSYLNKL 869
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 870 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 929
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 930 LSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMRDLEI 989
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N +P
Sbjct: 990 RGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNFFIPE 1046
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G+ P + ILL+K +R +A
Sbjct: 1047 TYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--IRTLA 1102
Query: 561 ADIGITKIYASGKMVGMKT 579
+ +G + + MK+
Sbjct: 1103 SSLGFESVTEMKDEIKMKS 1121
>gi|423480171|ref|ZP_17456883.1| transcription-repair coupling factor [Bacillus cereus BAG6X1-1]
gi|402423674|gb|EJV55880.1| transcription-repair coupling factor [Bacillus cereus BAG6X1-1]
Length = 1176
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 332/527 (62%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 GELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|381182424|ref|ZP_09891232.1| transcription-repair coupling factor, partial [Listeriaceae bacterium
TTU M1-001]
gi|380317698|gb|EIA21009.1| transcription-repair coupling factor, partial [Listeriaceae bacterium
TTU M1-001]
Length = 1038
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/482 (43%), Positives = 310/482 (64%), Gaps = 12/482 (2%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E K P+ L+KL + W+R KTK K ++Q + DL++LY R +K + P + EF
Sbjct: 560 EGKAPK-LNKLGGS-EWKRVKTKVKASVQDIADDLIKLYAEREAEKGFAFSPDSDMQREF 617
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+PT DQ ++ +++ D+ ER PMDRL+ GDVG+GKTEVALRA F V GKQ
Sbjct: 618 EDSFPYQPTEDQVRSIREIKHDM-ERIRPMDRLLVGDVGYGKTEVALRAAFKAVMDGKQV 676
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+QHF+ + ERF +P I +GLLSRF+++ ++ E + + G ++I+VGTH
Sbjct: 677 AFLVPTTILAQQHFETMKERFQGFP-INIGLLSRFRTRKQQNETISGLASGTVDIVVGTH 735
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V Y +LG L+VDEEQRFGV KEKI + +DVLTL+ATPIPRTL++++ G R
Sbjct: 736 RLLSKDVKYRDLGFLIVDEEQRFGVTHKEKIKQIRSKIDVLTLTATPIPRTLHMSMLGVR 795
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S+I TPP R P++T+++ + + AI+ EL R GQV+Y+ R++ + + D +
Sbjct: 796 DLSVIETPPANRFPVQTYVTEQNNVLIREAIERELARDGQVYYLYNRVESILQKADEISM 855
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P +A+AHGQ +LE + F +G +L+ T I+E+G+DI N NT+ VQ+
Sbjct: 856 LVPDARVAVAHGQMTESELESVILSFLEGEYDVLVTTTIIETGVDIPNVNTLFVQNADHM 915
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL A++E ELG GF++A +D+
Sbjct: 916 GLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLQAIKEFTELGSGFKIAMRDLS 975
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VDEHCVISVPYKSVQIDININPR 499
IRG G I G QQ G + +VG DL+ +ML E++ DE P V+IDI ++
Sbjct: 976 IRGAGNILGAQQHGFIDSVGFDLYSQMLQEAIEARRPKDERE----PVAPVEIDIQVDAY 1031
Query: 500 LP 501
+P
Sbjct: 1032 IP 1033
>gi|357053333|ref|ZP_09114429.1| transcription-repair coupling factor [Clostridium clostridioforme
2_1_49FAA]
gi|355385808|gb|EHG32856.1| transcription-repair coupling factor [Clostridium clostridioforme
2_1_49FAA]
Length = 1200
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 220/563 (39%), Positives = 348/563 (61%), Gaps = 8/563 (1%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEF 82
E K+P+ L+KL W + KT+ + A+Q++ DL++LY R ++ Y P EF
Sbjct: 588 EAKKPK-LNKLG-GAEWNKTKTRVRGAVQEIAKDLVKLYAARQEKAGFQYGPDTVWQREF 645
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPY+ T DQ A V++D+ R+ MDRLICGDVG+GKTEVALRA F V KQ
Sbjct: 646 EELFPYDETDDQMDAIDAVKKDMESRKI-MDRLICGDVGYGKTEVALRAAFKAVQDSKQV 704
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
+ L PT +LA+QH++ +R +P ++V +LSRF + A ++ L+ ++ G ++I++GTH
Sbjct: 705 VYLVPTTILAQQHYNTFVQRMKDFP-VRVDMLSRFCTPARQKRTLEDLRKGMVDIVIGTH 763
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
+L + + +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL+++L G R
Sbjct: 764 RVLSKDMQFKDLGLLIIDEEQRFGVAHKEKIKHLKENVDVLTLTATPIPRTLHMSLAGIR 823
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S++ PP +R+PI+T++ +++E V AI EL R GQV+YV R+ ++E +Q
Sbjct: 824 DMSVLEEPPVDRMPIQTYVMEYNEEMVREAINRELARNGQVYYVYNRVTDIDEVAGRVQA 883
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P + AHGQ +LE M F G I +L+ T I+E+GLDI NANT+I+ D +
Sbjct: 884 LVPDAVVTFAHGQMREHELERIMADFINGEIDVLVSTTIIETGLDIPNANTMIIHDADRM 943
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQLRGRVGR+++ ++A+L Y LL ++A +RL A+ E ELG G ++A +D+
Sbjct: 944 GLSQLYQLRGRVGRSNRTSYAFLMYKRDKLLREEAEKRLQAIREFTELGSGIKIAMRDLE 1003
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 502
IRG G + G +Q G + VG DL+ +ML +++ + + Y++V ++ +I+ +P
Sbjct: 1004 IRGAGNVLGAEQHGHMEAVGYDLYCKMLNQAVLALKGETLEEDSYETV-VECDIDAYIPG 1062
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 562
YI + +++ ++ + MQ + L ++G P+S+E LLK +R +A
Sbjct: 1063 RYIKNEYQKLDIYKRISAIETEEEYMDMQ--DELMDRFGDIPHSVENLLKIAAIRALAHR 1120
Query: 563 IGITKIYASGKMVGMKTNMNKKV 585
+T++ + + V + + K+
Sbjct: 1121 AYVTEVVINRQEVRLTMHQKAKL 1143
>gi|423520642|ref|ZP_17497115.1| transcription-repair coupling factor [Bacillus cereus HuA4-10]
gi|401180538|gb|EJQ87696.1| transcription-repair coupling factor [Bacillus cereus HuA4-10]
Length = 1176
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/528 (40%), Positives = 334/528 (63%), Gaps = 18/528 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 GELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + +A +DI L E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGISAIEDIEELQ---EEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|423416553|ref|ZP_17393642.1| transcription-repair coupling factor [Bacillus cereus BAG3X2-1]
gi|401110207|gb|EJQ18118.1| transcription-repair coupling factor [Bacillus cereus BAG3X2-1]
Length = 1176
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 332/527 (62%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|423399538|ref|ZP_17376734.1| transcription-repair coupling factor [Bacillus cereus BAG2X1-1]
gi|423410230|ref|ZP_17387377.1| transcription-repair coupling factor [Bacillus cereus BAG2X1-3]
gi|401643594|gb|EJS61290.1| transcription-repair coupling factor [Bacillus cereus BAG2X1-1]
gi|401649039|gb|EJS66629.1| transcription-repair coupling factor [Bacillus cereus BAG2X1-3]
Length = 1176
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 332/527 (62%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + + G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLNDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ V+ +A
Sbjct: 1045 MYKQFRGVS--TIEDIEELQEEMIDRFGDYPQEVGYLLQIANVKVLA 1089
>gi|262198049|ref|YP_003269258.1| transcription-repair coupling factor [Haliangium ochraceum DSM 14365]
gi|262081396|gb|ACY17365.1| transcription-repair coupling factor [Haliangium ochraceum DSM 14365]
Length = 1257
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 229/577 (39%), Positives = 336/577 (58%), Gaps = 46/577 (7%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEF 82
E PR L KL T W++ + K ++ + +L++LY R Q YP + + EF
Sbjct: 622 EGHAPR-LDKLGGVT-WQKARKKASAQVKALAEELLKLYAQRAAQPGHAYPSSDHMFREF 679
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
A F +E TPDQ++A +V D+ E E PMDRL+CGDVG+GKTEVALRA F V+ GKQA
Sbjct: 680 EATFAFEETPDQQRAIDEVLADM-ESERPMDRLVCGDVGYGKTEVALRACFKAVAGGKQA 738
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
+LAPT VL +QH+ V ERF+ +P + VG LSRFQS+AE+ + + + G ++++VGTH
Sbjct: 739 ALLAPTTVLVEQHYATVCERFAGWP-VSVGRLSRFQSRAEQLDTIKGLAAGTVDLVVGTH 797
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
+L V + +LGLLV+DEEQRFGV KE++ + +DVLTL+ATPIPRTL+LA++G R
Sbjct: 798 RVLSKDVRFKDLGLLVIDEEQRFGVTHKERLKRVRTQLDVLTLTATPIPRTLHLAMSGLR 857
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG---------- 312
D S+I+TPP +R ++T ++ + I+ EL RGGQVF+V PRI
Sbjct: 858 DLSIIATPPADRRAVRTFVAQVDDGVLREGIRRELGRGGQVFFVCPRIGADPAPSKGKVK 917
Query: 313 -------------------LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAI 353
L+E + L+ P +A+AHGQ + LE+ M F G +
Sbjct: 918 GKGKSQGETARRVRRGDISLDEWAEHLRALVPEARVAVAHGQMSAEALEKVMIDFVSGNL 977
Query: 354 KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLL 413
+IL+ T IVESGLDI ANT+ V FGLAQLYQLRGR+GR+ + A YL P L
Sbjct: 978 EILVSTTIVESGLDIARANTMFVDRADSFGLAQLYQLRGRIGRSKQRAFCYLLVPPPEKL 1037
Query: 414 SDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFES 473
S A RL L+ ELG GFQ+A D+ IRG G + G +Q+G + VG + + ML E+
Sbjct: 1038 SSDARRRLETLQRFSELGAGFQIASHDLEIRGGGELLGAKQSGAIAAVGFEAYAAMLEEA 1097
Query: 474 LSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFT 533
++++ V + ++++++ +P EYI +++ A ++D ++
Sbjct: 1098 VAELRSGDAGLVRPRDPELNVDVPGYIPDEYIPDTGQRLDLYKRLSDAEDEDELKIL--V 1155
Query: 534 ESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYA 570
E + +YG+ P +E+L AD+ + KI+A
Sbjct: 1156 EEITDRYGELPDEVELL----------ADLMVLKIHA 1182
>gi|229021662|ref|ZP_04178248.1| Transcription-repair-coupling factor [Bacillus cereus AH1272]
gi|228739637|gb|EEL90047.1| Transcription-repair-coupling factor [Bacillus cereus AH1272]
Length = 1010
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 332/527 (62%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 407 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 466
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 467 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 525
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 526 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 584
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 585 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 644
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 645 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 704
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 705 GELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 764
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 765 RVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 824
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 825 DSVGFDLYSQMLKDAIEQRRGTDGVENIV------NVEIDLEVDAYLPDAYISDSKQKIM 878
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 879 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 923
>gi|227873322|ref|ZP_03991584.1| transcription-repair coupling factor [Oribacterium sinus F0268]
gi|227840837|gb|EEJ51205.1| transcription-repair coupling factor [Oribacterium sinus F0268]
Length = 1138
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 228/551 (41%), Positives = 344/551 (62%), Gaps = 20/551 (3%)
Query: 24 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 82
E K P+ L++L + + W++ K+K K A++++ +L+ LY R +++ P+ K+ EF
Sbjct: 524 EAKAPK-LNRL-NGSEWQKTKSKVKGAVREIAKELLALYAKRQEERGYPFGKDTVWQREF 581
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
FPYE T DQ A + D+ E E MDRL+CGDVG+GKTE+ALRA F V KQ
Sbjct: 582 EEAFPYEETGDQLLAIEATKEDM-ESEKIMDRLVCGDVGYGKTEIALRAAFKAVQDSKQV 640
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
L PT +LA+Q ++ ER +P ++VG+LSRFQS+ E + L+ + G ++I+VGTH
Sbjct: 641 AYLCPTTILAQQIYNGFVERMKGFP-VEVGILSRFQSQKEVHKTLEQLASGRIDILVGTH 699
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
LL V + NLGLLVVDEEQRFGV+ KE+I S K +VDVLTLSATPIPRTL+++L G R
Sbjct: 700 RLLSKDVHFKNLGLLVVDEEQRFGVQHKERIKSLKENVDVLTLSATPIPRTLHMSLVGIR 759
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 322
D S++ P +RLPI+T++ + + AI EL R GQV+YV R+K +E+ LQ+
Sbjct: 760 DLSILEEAPMDRLPIQTYVMEEEEGTIREAISRELRRNGQVYYVHNRVKSIEDTALRLQK 819
Query: 323 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 382
P IA AHGQ ++LEE M F G I +L+ T I+E+GLDI NANT+I+QD +
Sbjct: 820 LLPEARIAYAHGQMGEKELEEIMLSFIAGEIDVLVSTTIIETGLDIPNANTLIIQDADKM 879
Query: 383 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 442
GL+QLYQ+RGRVGR+++ ++A+L Y L++++ +RL A+ E ELG G ++A +D+
Sbjct: 880 GLSQLYQIRGRVGRSNRTSYAFLLYKKGKSLTEESEKRLKAIREFTELGSGIRIALRDLE 939
Query: 443 IRGFGTIFGEQQTGDVGNVGVDLFFEM-----LFESLSKVDEHCVISVPYKSVQIDININ 497
IRG G + G +Q G + VG +L+ ++ L E K +E Q+D++++
Sbjct: 940 IRGAGNVLGAEQHGHMEAVGYELYTKLLRHAVLLEKGEKQEEEDF------ETQLDVDLD 993
Query: 498 PRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
+P Y+ + E +E + A ++E++ M + L +YG PY +E L + +
Sbjct: 994 AFIPESYMENEEQKLEAYQKIALLSSEEEK---MDLEDELTDRYGDLPYQVENLFQVASL 1050
Query: 557 RRMAADIGITK 567
R + IG+T+
Sbjct: 1051 RNLLHKIGVTE 1061
>gi|423461684|ref|ZP_17438480.1| transcription-repair coupling factor [Bacillus cereus BAG5X2-1]
gi|401135346|gb|EJQ42945.1| transcription-repair coupling factor [Bacillus cereus BAG5X2-1]
Length = 1176
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 333/527 (63%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 GELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|268608427|ref|ZP_06142154.1| transcription-repair coupling factor [Ruminococcus flavefaciens FD-1]
Length = 1160
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 220/545 (40%), Positives = 335/545 (61%), Gaps = 20/545 (3%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ-KRPPYPKNPAIAEFAAQFPYE 89
L+KLS + W++ + K A++ M +L+ LY R K YP + +F +FPY
Sbjct: 554 LNKLS-SNEWQKTRNNVKHAVKDMAHELIALYAKREKSVGFAFYPDDEIQRDFEERFPYV 612
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
T DQ ++ +++ D+ ER PM+RL+CGDVGFGKTEVALRA V AGKQ +LAPT
Sbjct: 613 ETDDQLQSISEIKADM-ERARPMERLLCGDVGFGKTEVALRAAMKCVLAGKQCAILAPTT 671
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
VLA QH+ RF +P +KV LLSR++S ++EE + +K G ++I++GTH ++ V
Sbjct: 672 VLAWQHYQTALRRFEHFP-VKVELLSRYRSPKQQEEIIKKLKQGRIDILIGTHKIIQKSV 730
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
V+ +LGL ++DEEQRFGV KEK VDVL LSATPIPRTL +A++G RD S++
Sbjct: 731 VFKDLGLAIIDEEQRFGVAHKEKFKESFTGVDVLMLSATPIPRTLNMAMSGIRDMSVLEE 790
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP +R P++T++ ++ ++ AI EL RGGQV+Y+ R++ ++ LQQ P I
Sbjct: 791 PPQDRYPVQTYVIEYNIGTIVQAIVRELRRGGQVYYIHNRVETIQACAAKLQQLLPEARI 850
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
A AHGQ Q+ + E+ + I ILICT I+E+G+D+ N NT+I++D +FGL+QLYQ
Sbjct: 851 AYAHGQMSEDQMSDIWEQLVEHEIDILICTTIIETGVDVPNVNTLIIEDSDRFGLSQLYQ 910
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR+++ +AY Y +L++ A +RL A+ E + G GF++A +D+ IRG G+I
Sbjct: 911 LRGRVGRSNRRGYAYFTYQRDKVLTEVATKRLNAMREFTQFGSGFRIALRDLEIRGAGSI 970
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G +Q G + VG D++ ++L E++++ +P +DI I+ +P YI+ L
Sbjct: 971 LGGRQHGHMEAVGYDMYLKLLSEAIAEEKGEIPEKIP--ECLVDIQIDAHIPETYISSLN 1028
Query: 510 NPMEM------VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADI 563
++M VNE + + L +YG+ P S+ L++ +R AA +
Sbjct: 1029 QRIDMYRKIMLVNEDNDKTD--------LIDELIDRYGEPPKSVLGLIEVSLLRNKAAHL 1080
Query: 564 GITKI 568
GIT+I
Sbjct: 1081 GITEI 1085
>gi|257899966|ref|ZP_05679619.1| transcription-repair coupling factor [Enterococcus faecium Com15]
gi|257837878|gb|EEV62952.1| transcription-repair coupling factor [Enterococcus faecium Com15]
Length = 1173
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVEDQRQKIEI 1043
>gi|257886022|ref|ZP_05665675.1| transcription-repair coupling factor [Enterococcus faecium 1,231,501]
gi|257821878|gb|EEV49008.1| transcription-repair coupling factor [Enterococcus faecium 1,231,501]
Length = 1173
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVATTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVADQRQKIEI 1043
>gi|254724194|ref|ZP_05185979.1| transcription-repair coupling factor [Bacillus anthracis str. A1055]
Length = 1176
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 332/527 (62%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 SDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|221195325|ref|ZP_03568381.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626]
gi|221185228|gb|EEE17619.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626]
Length = 1150
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 217/548 (39%), Positives = 344/548 (62%), Gaps = 12/548 (2%)
Query: 28 PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNPAIAEFAA 84
PR L++LS T W R K + + +K+ DL++LY R P Y P E +
Sbjct: 550 PR-LTRLS-TADWSRATAKARKSAKKLAFDLVDLYTRRASV--PGYAFSFDTPEQEEMES 605
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
FPY+ TPDQ+ A D++ D+ R+ PMDRL+CGDVGFGKTEVALRA F G+Q M+
Sbjct: 606 AFPYQMTPDQESALADIKLDMEARK-PMDRLLCGDVGFGKTEVALRAAFKACQDGRQVMI 664
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
L PT +LA+QHF+ RF+ + ++V +LSRF + A + + L+ G +N++VGTH L
Sbjct: 665 LCPTTILAQQHFETFFSRFAPF-GLQVAVLSRFVTPALQRKALEGFADGSVNVLVGTHRL 723
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264
L + V ++LGL++VDEEQRFGV+ KE++ + + VDVLTLSATPIPRT+ +A++G RD
Sbjct: 724 LSADVNPHDLGLVIVDEEQRFGVQHKEQLKNMREQVDVLTLSATPIPRTMQMAMSGVRDM 783
Query: 265 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 324
SLI TPPP R P+K + + + V +AI+ EL R GQV+YV R+ +++ + + +A
Sbjct: 784 SLIMTPPPGRKPVKVTVGEYDPDLVSAAIRAELARKGQVYYVSNRVTTIDDAVSRVNEAA 843
Query: 325 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 384
P + +AHGQ +R++E+ M +F + I +L+ T I+ESG+D + NT+I++D ++ GL
Sbjct: 844 PEARVGVAHGQMSAREVEDVMLRFQEHEIDVLVATTIIESGIDNPHTNTLIIEDSERLGL 903
Query: 385 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIR 444
AQLYQL+GRVGR ++A+AY +P + L+++A RL A+ E ++LG G ++A +D+ IR
Sbjct: 904 AQLYQLKGRVGRGRQQAYAYFMFPAEMPLTEEATARLTAINEYQDLGSGMKIAMRDLEIR 963
Query: 445 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEY 504
G G++ G +Q G++ VG DLF +ML E++++ V V +++ + L EY
Sbjct: 964 GAGSLMGAEQHGNLSGVGFDLFTQMLGEAVAEARGETP-DVEQSEVTLNLPTDFFLDEEY 1022
Query: 505 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 564
+ ++ + + AA QD+ + + + ++G P + + L + VR A +G
Sbjct: 1023 LPEVDRRVLVYRRL--AAAQDLADVDEIQQETEERFGALPLAGKNLFDRARVRIRAERLG 1080
Query: 565 ITKIYASG 572
++ I +G
Sbjct: 1081 LSSISLTG 1088
>gi|423399627|ref|ZP_17376800.1| transcription-repair coupling factor [Bacillus cereus BAG2X1-2]
gi|401658233|gb|EJS75730.1| transcription-repair coupling factor [Bacillus cereus BAG2X1-2]
Length = 1176
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 332/527 (62%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 GELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|229148463|ref|ZP_04276720.1| Transcription-repair-coupling factor [Bacillus cereus m1550]
gi|228635005|gb|EEK91577.1| Transcription-repair-coupling factor [Bacillus cereus m1550]
Length = 1176
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 332/527 (62%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH +
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHHET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQV+++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALIREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 SELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGAENIV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|423556950|ref|ZP_17533253.1| transcription-repair coupling factor [Bacillus cereus MC67]
gi|401194029|gb|EJR01026.1| transcription-repair coupling factor [Bacillus cereus MC67]
Length = 1176
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/528 (40%), Positives = 334/528 (63%), Gaps = 18/528 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 GELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + +A +DI L E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGISAIEDIEELQ---EEMIDRFGDYPQGVGYLLQIANIKVLA 1089
>gi|167629346|ref|YP_001679845.1| transcription-repair coupling factor [Heliobacterium modesticaldum
Ice1]
gi|167592086|gb|ABZ83834.1| transcription-repair coupling factor [Heliobacterium modesticaldum
Ice1]
Length = 1247
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/548 (39%), Positives = 333/548 (60%), Gaps = 23/548 (4%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNPAIAEFAAQFPYEPTPDQKK 96
W + K K K +++++ DL++LY R + +P Y P EF FPYE TPDQ +
Sbjct: 585 WHKVKQKVKDSVRELAGDLLKLYAAR--ESKPGYAYSADTPWQKEFEEAFPYEETPDQAR 642
Query: 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156
+ +V+ D+ E+ MDRL+CGDVG+GKTEVA+RA F V GKQ +L PT +LA+QH+
Sbjct: 643 SIAEVKTDM-EKAKAMDRLLCGDVGYGKTEVAIRAAFKAVQDGKQVAILVPTTILAQQHY 701
Query: 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216
+ ERFS YP ++V +LSRF+S E++ L+ +K G ++I++GTH L+ + V + +LGL
Sbjct: 702 NTFRERFSGYP-VRVDVLSRFRSPKEQKASLEGLKSGEVDIVIGTHRLVSNDVSFKDLGL 760
Query: 217 LVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP 276
L++DEEQRFGV KEKI K +VDVLTLSATPIPRTL+++L G RD S+I TPP +R P
Sbjct: 761 LIIDEEQRFGVAHKEKIKHLKENVDVLTLSATPIPRTLHMSLVGLRDMSIIETPPEDRYP 820
Query: 277 IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQ 336
++T++ ++ E + A++ EL+RGGQV+YV RI+ L+ L P I + HG+
Sbjct: 821 VQTYVVEYNPELIREAVRRELNRGGQVYYVRNRIEDLDRIARDLGALVPDARIVVGHGKM 880
Query: 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396
QLE+ M F +G IL+CT I+E+GLDI N NT+IV GL+QLYQLRGRVGR
Sbjct: 881 REDQLEQVMLDFLEGEYDILVCTTIIETGLDIPNVNTLIVDGADLMGLSQLYQLRGRVGR 940
Query: 397 ADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+++ A+A+ Y +L++ A +RL A+ E ELG GF++A +D+ IRG G + G +Q G
Sbjct: 941 SNRLAYAFFTYRKDKVLTEVAEKRLHAIREFTELGSGFKIAMRDLEIRGVGNLLGPEQHG 1000
Query: 457 DVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+ +VG DL+ +L E++ ++ P +DI ++ +P Y+ + ++
Sbjct: 1001 QMASVGFDLYCRLLEEAIQELKGAKPEEAP--ETFVDIRVDAFIPDGYMADSLSKVQFYK 1058
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVG 576
A D + E + ++G P +E L + +++I A G+ G
Sbjct: 1059 RLLAARTVD--QVEALEEEMEDRFGDPPEPVENL------------VSLSRIKAYGQQAG 1104
Query: 577 MKTNMNKK 584
+ +K
Sbjct: 1105 VSAVQQEK 1112
>gi|282850657|ref|ZP_06260036.1| transcription-repair coupling factor [Veillonella parvula ATCC
17745]
gi|282580150|gb|EFB85554.1| transcription-repair coupling factor [Veillonella parvula ATCC
17745]
Length = 1098
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 222/483 (45%), Positives = 321/483 (66%), Gaps = 15/483 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAE 81
NE PR ++K+ W + +K K +I + L+E+Y R + + P P E
Sbjct: 483 NEGDVPR-INKMGGRD-WSKVVSKAKKSIDDLADKLVEIYAQREITEGFAFLPDQPWQQE 540
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPYE T DQ +A +++ + ER PMDRL+ GDVGFGKTEVA+RAIF V +GKQ
Sbjct: 541 FEDAFPYEETEDQLQATAEIKESM-ERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQ 599
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
VL PT VLA+QHF RF+ + +KV +L+RF++ +EK++ L ++ G +++++GT
Sbjct: 600 VAVLVPTTVLAQQHFQTFLNRFAPF-GVKVDVLNRFRTTSEKKQILKGVEDGSIDVLIGT 658
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
HSLL +VV+ +LG+LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L G
Sbjct: 659 HSLLNKKVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGV 718
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
R+ S+I+TPP ERLP++T++ + + AIK EL RGGQV++V R+ + + L+
Sbjct: 719 REMSVINTPPEERLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELLE 778
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
A PG+ A+AHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D +
Sbjct: 779 SALPGLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADR 838
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEKD 440
GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA +D
Sbjct: 839 LGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-ILSEAAEKRLKAIEEFTELGAGFKLAMRD 897
Query: 441 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 500
+ IRG G + G QQ G++ +VG ++ ML E+++K K V+ D++I+P +
Sbjct: 898 LEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQN--------KEVERDVSIDPAI 949
Query: 501 PSE 503
E
Sbjct: 950 DLE 952
>gi|410462971|ref|ZP_11316517.1| transcription-repair coupling factor Mfd [Desulfovibrio magneticus
str. Maddingley MBC34]
gi|409983910|gb|EKO40253.1| transcription-repair coupling factor Mfd [Desulfovibrio magneticus
str. Maddingley MBC34]
Length = 1148
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/529 (40%), Positives = 323/529 (61%), Gaps = 7/529 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W+ + + K A++++ DL+E+Y +R K Y P N EF A F +E TPDQ++A
Sbjct: 554 WKSVRERAKKAVERIAADLVEMYAYRQVAKGYAYGPTNELYLEFEATFGFEETPDQERAI 613
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+V D+ ER PMDRL+CGDVGFGKTEVALRA F V GKQ +L PT VLA+QH+
Sbjct: 614 GEVLADM-ERPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVAMLCPTTVLAEQHYQN 672
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ R +P ++V +LSRF S ++ L+ + G ++I+VGTH +L S V N+GLL+
Sbjct: 673 FAARLEGFP-VRVEMLSRFVSPKRRKVVLEAVSRGEVDILVGTHRILSSDVAIPNIGLLI 731
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGVK KE++ +FK ++D LTL+ATPIPRTL L+L+G R S+I TPPP+R ++
Sbjct: 732 LDEEQRFGVKHKERLKAFKKNIDALTLTATPIPRTLQLSLSGVRGLSVIETPPPDRKTVE 791
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T L + + ++ EL+R GQVF+V R++GLE+ +++ PG +A+AHGQ
Sbjct: 792 TALVERDEGFLREVLRRELERQGQVFWVHNRVQGLEDVAAYVKTLAPGAKVAMAHGQMSE 851
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
LEE M F G IL+CT+I+ESGLD ANT+IV + FGL QLYQLRGRVGR+
Sbjct: 852 TALEEAMHGFWHGETDILVCTSIIESGLDFPRANTLIVDNAHMFGLGQLYQLRGRVGRSP 911
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
++A+AY P + + A +RL + + LG GFQ+A +D+ +RG G I GE Q+G +
Sbjct: 912 RQAYAYFVVPSIEKVPELARKRLRVILDMDYLGAGFQVAMEDLRLRGAGNILGEAQSGHI 971
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 518
+G+D+F EML E + ++ + ++ + I R+P Y+ + + +
Sbjct: 972 ARIGLDMFLEMLAEEVRRLKGEPIKE--RIETELTLGIAARIPERYVPEASDRLRLYKAL 1029
Query: 519 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITK 567
A ++ L + +R ++G P ++ L +++ +G TK
Sbjct: 1030 STARTEE--RLAEIAAEMRDRFGPPPAEVDNFRAVLAFKQVLGRLGATK 1076
>gi|312144318|ref|YP_003995764.1| transcription-repair coupling factor [Halanaerobium hydrogeniformans]
gi|311904969|gb|ADQ15410.1| transcription-repair coupling factor [Halanaerobium hydrogeniformans]
Length = 1164
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 220/548 (40%), Positives = 341/548 (62%), Gaps = 23/548 (4%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQK 95
++ W++ K K + ++++M + L+ELY R K +P++ EF FP+ TPDQ+
Sbjct: 567 SSDWKKVKEKVEKSVKEMAIGLLELYAERETLKGYKFPEDDLWQKEFEDAFPFHETPDQQ 626
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
KA +V+ D+ E E PMDRL+CGDVG+GKTEVA+RA F GKQ VL PT +LA+QH
Sbjct: 627 KAIKEVKSDM-ESEQPMDRLLCGDVGYGKTEVAIRAAFKAALDGKQTAVLVPTTILAQQH 685
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
F+ +R +P I++ +LSRF++KAE+ + L + G ++I++GTH LL V++++LG
Sbjct: 686 FNTFEDRIEDFP-IRISMLSRFKTKAEQRKTLKELIKGEVDIVIGTHRLLSKDVIFDDLG 744
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL++DEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++AL G RD SLI TPP R
Sbjct: 745 LLIIDEEQRFGVTHKEKLKDIKRNVDVLTLTATPIPRTLHMALVGVRDMSLIETPPENRY 804
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
PI+T + + E + A++ EL R GQ+++V R++ +E+ LQ+ P IA+AHGQ
Sbjct: 805 PIRTFIKEKNHELIAGAVRRELAREGQIYFVHNRVEDIEKIAGKLQKIVPEAKIAVAHGQ 864
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
++LE+ M F IL+CT I+E+GLDI N NTII+ + GL+QLYQLRGRVG
Sbjct: 865 MKEKRLEKIMYNFYHHKFDILVCTTIIETGLDIPNVNTIIINHADKMGLSQLYQLRGRVG 924
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R ++ A+AYL Y +L++ A +RL A++E LG GF++A +D+ IRG G + G +Q+
Sbjct: 925 RTNRIAYAYLLYKRDRILAEVAEKRLEAIKEFSSLGSGFKIAMRDLEIRGAGNLLGPEQS 984
Query: 456 GDVGNVGVDLFFEML---FESLS--KVDEHCVISVPYKSVQIDININPRLPSEYINHLEN 510
G + VG L+ ++L E L K D+ +V++D+ ++ +P +YI +
Sbjct: 985 GHIAAVGFSLYTKLLEGTIEDLKGEKKDDKI-------TVEVDLRVDAYIPDDYIKYEAR 1037
Query: 511 PMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITK 567
+E+ + + AA+ + + L ++G+ P + L+ ++ +A + I
Sbjct: 1038 KIEIYKKIRDIHSAADA-----VDVVDELIDRFGEPPKEVMRLINTARLKILAQKLKIQL 1092
Query: 568 IYASGKMV 575
I GK +
Sbjct: 1093 IRQEGKNI 1100
>gi|212702598|ref|ZP_03310726.1| hypothetical protein DESPIG_00624 [Desulfovibrio piger ATCC 29098]
gi|212674039|gb|EEB34522.1| transcription-repair coupling factor [Desulfovibrio piger ATCC 29098]
Length = 1192
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 220/490 (44%), Positives = 309/490 (63%), Gaps = 11/490 (2%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
F+ E P L +L + W K K + AI+K+ DL+E+Y +R K Y P
Sbjct: 576 FKGGEGAEP-ALDRLGGAS-WSSGKEKVRKAIEKIAADLVEMYAYRKVAKGFRYDPPGEL 633
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
EF A F +E TPDQ +A DV D+ + E PMDRL+CGDVGFGKTEVALRA F S
Sbjct: 634 YHEFEATFGFEETPDQARAIEDVLADMDKSE-PMDRLVCGDVGFGKTEVALRAAFRAASE 692
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G+Q +L PT VLA+QH+ R + +P + VGLLSRF +A ++E L G ++I+
Sbjct: 693 GRQVALLCPTTVLAEQHYQTFRARLAGFP-VTVGLLSRFVPRARQKEVLKAAAEGQIDIL 751
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH LL S V NL LL++DEEQRFGV+ KEK+ + K +VDVLTL+ATPIPRTL L++
Sbjct: 752 LGTHRLLSSDVSLPNLSLLILDEEQRFGVRHKEKLKALKKNVDVLTLTATPIPRTLQLSM 811
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
+G RD S+I T P +R P+ T + + + ++ EL R GQVF+V R++GLE +
Sbjct: 812 SGIRDLSVIETAPQDRKPVATAVLRRDDATLRTVLERELAREGQVFWVYNRVQGLERVAE 871
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
++++ P + +AHGQ +LE M KF G + +L+CT IVESGLD ANT++V
Sbjct: 872 YVRKLVPTARVGMAHGQMSESELESNMHKFWHGELDVLVCTAIVESGLDFPRANTLVVDQ 931
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q FGL QLYQLRGRVGR+D++A+A+ PD LS+ A ERL + + LG GFQ+A
Sbjct: 932 AQLFGLGQLYQLRGRVGRSDRQAYAFFVVPDTEHLSEVAEERLRIIMDMDYLGAGFQVAM 991
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ- 497
+D+ +RG G I GE Q+G +G VG+DL+ EML E+++++ V + V+ ++N+
Sbjct: 992 EDLRLRGAGNILGEVQSGHMGRVGLDLYLEMLEEAVARLKGTPVT----QDVETELNLGL 1047
Query: 498 -PRLPSEYIN 506
+P YI
Sbjct: 1048 PAHIPQSYIE 1057
>gi|319783816|ref|YP_004143292.1| DEAD/DEAH box helicase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317169704|gb|ADV13242.1| transcription-repair coupling factor [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 1165
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 325/561 (57%), Gaps = 14/561 (2%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPY 88
TL KL AW+ RK + + + M L+ + R + PP P EFAA+FPY
Sbjct: 559 TLDKLG-GGAWQSRKARLRKRLLDMAGQLIRIAAERQMRSAPPLVPAEGLYGEFAARFPY 617
Query: 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148
E T DQ+ A V DL + PMDRLICGDVGFGKTEVALRA F G Q V+ PT
Sbjct: 618 EETDDQQTAIDSVRDDLAAGK-PMDRLICGDVGFGKTEVALRAAFIAAMEGFQVAVVVPT 676
Query: 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208
+L++QHF S+RFS P I+V SR E E I G ++I++GTH+LLGS
Sbjct: 677 TLLSRQHFKTFSQRFSGLP-IRVAQASRLVGAKELAETKKGIAEGQVDIVIGTHALLGSA 735
Query: 209 VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268
+ + NLGLL++DEEQ FGVK KE++ K V VLTLSATPIPRTL LALTG R+ SLI+
Sbjct: 736 ISFKNLGLLIIDEEQHFGVKHKERLKDLKTDVHVLTLSATPIPRTLQLALTGVRELSLIA 795
Query: 269 TPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328
TPP +R+ ++T +S F + + E RGG FYV+PRI L E DFL+++ P +
Sbjct: 796 TPPVDRMAVRTFISPFDPLVIRETLLRERYRGGHSFYVVPRISDLSEIHDFLKESVPELK 855
Query: 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388
+A+AHGQ +L++ M F G +L+ T IVESGLDI ANT+I+ FGL+QLY
Sbjct: 856 VAVAHGQMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTLIIHRADMFGLSQLY 915
Query: 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448
QLRGRVGR+ A+A P L+D A RL L+ LG GFQLA D+ IRG G
Sbjct: 916 QLRGRVGRSKVRAYALFTLPANRKLTDTAERRLKVLQSLDTLGAGFQLASHDLDIRGAGN 975
Query: 449 IFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHL 508
+ GE+Q+G + VG +L+ +ML E++++V + + S QI + +P Y+ L
Sbjct: 976 LLGEEQSGHIKEVGFELYQQMLEEAVAEVKDSGEVQDGGWSPQIAVGTAVMIPESYVPDL 1035
Query: 509 ENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
+ + + + + E E D F L ++G P ++ LLK ++++ + +
Sbjct: 1036 QLRLALYRRLGDLENTEEID-----AFGAELIDRFGPLPEEVKHLLKIVFIKALCRKANV 1090
Query: 566 TKIYASGKMVGMKTNMNKKVF 586
K+ A K G+ + K+ F
Sbjct: 1091 EKLDAGPK--GVVIHFRKREF 1109
>gi|332654772|ref|ZP_08420514.1| transcription-repair coupling factor [Ruminococcaceae bacterium D16]
gi|332516115|gb|EGJ45723.1| transcription-repair coupling factor [Ruminococcaceae bacterium D16]
Length = 1164
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 225/572 (39%), Positives = 347/572 (60%), Gaps = 17/572 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAI 79
ETK+ LSKL T WER KT+ K A+Q + L+ELY R Q++P Y P +P
Sbjct: 560 QETKK---LSKLGGTD-WERAKTRAKKAVQDLAKGLIELYAQR--QRQPGYAFSPDSPWQ 613
Query: 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 139
EF QF Y T DQ + ++++D+ E PMDRL+CGDVG+GKTEVA RA+ V G
Sbjct: 614 REFEEQFEYTETDDQLRCIQEIKKDM-ESPVPMDRLLCGDVGYGKTEVAFRAMMKCVLDG 672
Query: 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 199
KQA VL PT VLA+QH+ RF KYP + + ++SRF++ + +E L +++G ++I++
Sbjct: 673 KQAAVLVPTTVLARQHYLNALRRFQKYP-VNIDVVSRFRTPTQMKETLRKVENGGVDILI 731
Query: 200 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 259
GTH L V + +LGLLVVDEEQRFGV+ KEK+ VDVLTLSATPIPRTL +A++
Sbjct: 732 GTHRLFNKDVKFKDLGLLVVDEEQRFGVQHKEKLKETFRQVDVLTLSATPIPRTLNMAMS 791
Query: 260 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 319
G RD S + PP +RLP++T++ + V A++ EL+RGGQV+Y+ R++ ++
Sbjct: 792 GIRDMSTLEEPPADRLPVQTYVLEHNWPVVADAMRRELERGGQVYYLHNRVETIDRTAAR 851
Query: 320 LQQAF-PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+QQ + +AHG+ +++ M + G + +L+CT I+E+G+D+ NANT+I++D
Sbjct: 852 IQQMLGETAAVGVAHGKMSQEAIDDVMSRMTDGELNVLVCTTIIETGIDLPNANTLIIED 911
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
GLAQL+QLRGRVGR+++ A+AYL Y +L++ A +RLAA+ E E G GF++A
Sbjct: 912 ADHLGLAQLHQLRGRVGRSNRRAYAYLTYRRGKVLTEVAAKRLAAIREFAEFGSGFKIAM 971
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G +Q+G + +VG D++ ++L E++ + E D+++
Sbjct: 972 RDLEIRGAGNVLGPEQSGFMLSVGYDMYLKLLEEAV--LTEQGQTPPKRTECSADLSVAA 1029
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
+P Y+ E M++ AA +D + L +YG+ P ++ L+ +R
Sbjct: 1030 SIPDRYVPSPEQRMDLYRRI--AAIRDESEADDLVDELIDRYGEPPRTVNNLISVALLRA 1087
Query: 559 MAADIGITKIY-ASGKMVGMKTNMNKKVFKMM 589
A+ G+T I G++V N + F +
Sbjct: 1088 AASQAGVTDIAQKKGQLVFTLDQFNLEQFSAL 1119
>gi|387792506|ref|YP_006257571.1| transcription-repair coupling factor Mfd [Solitalea canadensis DSM
3403]
gi|379655339|gb|AFD08395.1| transcription-repair coupling factor Mfd [Solitalea canadensis DSM
3403]
Length = 1129
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/554 (38%), Positives = 340/554 (61%), Gaps = 14/554 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYE 89
L+KL T AW++ K K ++ + DL++LY R K+ P E A F YE
Sbjct: 514 LNKLG-TDAWDKLKKNTKKKVKDIARDLIKLYAQRKAKEGYAFMPDTYLQNELEASFIYE 572
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ+K+ DV++D+ E PMDRL+CGDVGFGKTEVA+RA F V+ KQ VL PT
Sbjct: 573 DTPDQEKSTADVKKDM-EAPHPMDRLVCGDVGFGKTEVAIRAAFKAVTDSKQVAVLVPTT 631
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA QH+ ER +P + ++RF+S + +E L ++ G ++II+GTH L+ V
Sbjct: 632 ILASQHYRTFKERLKDFP-CNIDYINRFKSSKQIKETLKKLEEGKVDIIIGTHRLVSKDV 690
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ +LGLL++DEEQ+FGV KEK+ S +++VD LTL+ATPIPRTL+ +L G RD S+IST
Sbjct: 691 KFKDLGLLIIDEEQKFGVTVKEKLKSMRVNVDTLTLTATPIPRTLHFSLMGARDLSIIST 750
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP R P+ T L F+++ + A+++E+DRGGQVF+V R+ + + +++ V +
Sbjct: 751 PPANRQPVITELHVFNEKIIKDAVEFEVDRGGQVFFVHNRVSDIHDVAGLIRKLCKNVKV 810
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+ HGQ LE+ M F +G +L+ T I+E+GLDI NANTI++ FGL+ L+Q
Sbjct: 811 CVGHGQMEGEDLEDVMADFIEGKYDVLVATTIIEAGLDISNANTILINQAHNFGLSDLHQ 870
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
+RGRVGR++K+A YL P S+L+ +A +RL+A+EE +LG GF +A +D+ IRG G +
Sbjct: 871 MRGRVGRSNKKAFCYLLSPPLSVLTPEARKRLSAIEEFSDLGSGFNVAMRDLDIRGAGNL 930
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV-------PYKS-VQIDININPRLP 501
G +Q+G + +G +++ ++L E++ ++ E + P+ S ID ++ +P
Sbjct: 931 LGSEQSGFIAEIGYEMYHKILDEAVQELKEDEFSELFKDEKPRPFVSFTTIDTDLELLIP 990
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
+EY++ + + NE + + L F++ L ++G P ++ LL + ++ +A
Sbjct: 991 TEYVSSTQERYNLYNELSRVENE--TELQAFSDQLIDRFGPYPRQVKELLNTMRLQWLAK 1048
Query: 562 DIGITKIYASGKMV 575
DIG K+ K +
Sbjct: 1049 DIGFEKLMLKNKTL 1062
>gi|54293927|ref|YP_126342.1| transcription-repair coupling factor [Legionella pneumophila str.
Lens]
gi|53753759|emb|CAH15217.1| Transcription-repair coupling factor [Legionella pneumophila str.
Lens]
Length = 1153
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 230/573 (40%), Positives = 341/573 (59%), Gaps = 9/573 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA-IAEFAAQFPYEPTPDQKKAF 98
W++ K K I + ++L++LY R Q Y N + +FA+ FP+ TPDQ +A
Sbjct: 553 WQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFNQSEYIKFASGFPFTETPDQLQAI 612
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+ +D+ + PMDRLICGDVGFGKTEVA+RA F V GKQ +LAPT +LA QHF+
Sbjct: 613 EQIIKDM-QSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAPTTLLAGQHFES 671
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+RF+++P + + LLSRF+S E E L ++ G ++I++GTH L + + + NLGLL+
Sbjct: 672 FRDRFAEFP-VNIELLSRFRSNKESEAVLAALQSGKVDIVIGTHKLFQNNISFKNLGLLI 730
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEE RFGVKQKE I S + VD+L+++ATPIPRTL +A+ G RD SLI+TPP +RL IK
Sbjct: 731 IDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIRDISLIATPPAKRLAIK 790
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + AI E+ RGGQVFY+ ++ +E L+ P I AHGQ
Sbjct: 791 TFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIERVCQDLEALVPEAKIQSAHGQMRE 850
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
RQLE M F +L+CT I+E+G+DI ANTII+ +FGLAQL+QLRGRVGR+
Sbjct: 851 RQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLHQLRGRVGRSH 910
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+A+AYL P++ LL+ A++RL A+ +LG GF LA D+ IRG G + GE+Q+G++
Sbjct: 911 HQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGELLGEEQSGNM 970
Query: 459 GNVGVDLFFEMLFESLS--KVDEHCVISVP-YKSVQIDININPRLPSEYINHLENPMEMV 515
+G +LF EML +++ K + +S P ++ +ID+ I+ +P +YI + N + M
Sbjct: 971 HAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEIDLRISAIIPEDYIGDIHNRLIMY 1030
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 575
A + L + L ++G P ++ L ++ A +GI KI AS +
Sbjct: 1031 KRIANA--KTTQQLRELQIELIDRFGLLPQPVKHLFLITELKLKAEQLGIQKISASAQQG 1088
Query: 576 GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 608
+ + + + S+ +VH EG Q
Sbjct: 1089 KLDFSEKPSIDPGTLISLI-QVHAKRYQMEGPQ 1120
>gi|423278144|ref|ZP_17257058.1| transcription-repair coupling factor [Bacteroides fragilis HMW 610]
gi|404586154|gb|EKA90727.1| transcription-repair coupling factor [Bacteroides fragilis HMW 610]
Length = 1125
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 247/638 (38%), Positives = 366/638 (57%), Gaps = 32/638 (5%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
++ E + PR L+KL T AWE+ K + K I+ + DL++LY R ++K Y P +
Sbjct: 490 YKGKEGEAPR-LNKLG-TGAWEKLKERTKTKIKDIARDLIKLYSQRREEKGFAYSPDSFL 547
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ KA DV++D+ ER+ PMDRL+CGDVGFGKTEVA+RA F V+
Sbjct: 548 QRELEASFIYEDTPDQSKATADVKQDM-ERDMPMDRLVCGDVGFGKTEVAIRAAFKAVAD 606
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ VL PT VLA QHF +R P +V LSR ++ A+ + + ++ G +NI+
Sbjct: 607 NKQVAVLVPTTVLAYQHFQTFRDRLKGLP-CRVEYLSRARTAAQAKAVIKGLETGDVNIL 665
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +LG V + +LGLL++DEEQ+FGV KEK+ K++VD LT++ATPIPRTL +L
Sbjct: 666 IGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSL 725
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+ISTPPP R PI+T + FS+E + AI +E+ R GQVF V RI L E
Sbjct: 726 MGARDLSVISTPPPNRYPIQTEVHTFSEEVIADAINFEMSRNGQVFLVNNRIANLPELKA 785
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+ + P IAI HGQ +LE+ + F +LI T I+ESG+DI NANTII+
Sbjct: 786 MILRRIPDCRIAIGHGQMEPVELEQIIFGFVNYDYDVLIATTIIESGIDIPNANTIIINQ 845
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q FGL+ L+Q+RGRVGR++K+A YL P S L+ +A RL A+E +LG G +A
Sbjct: 846 AQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAM 905
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHC-----------VISV 485
+D+ IRG G + G +Q+G + ++G + + ++L E++ K DE +IS
Sbjct: 906 QDLDIRGAGNMLGAEQSGFIADLGYETYQKILSEAVHELKTDEFAELYADELKGEGIISG 965
Query: 486 P--YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGK 542
+ Q++ ++ LP+ Y+ M + E + ++D+ F L ++G
Sbjct: 966 EEFVEECQVESDLELLLPANYVTGSSERMLLYRELDGLTLDKDVNA---FRLRLEDRFGP 1022
Query: 543 EPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMN-------KKVFKMMIDSMTS 595
P E LL+ + +RR+AA +G+ K++ G + + N F MID M
Sbjct: 1023 VPPETEELLRIVPLRRLAARLGVEKVFLKGGRMTLFFVSNPDSPYYQSAAFGKMIDYMMK 1082
Query: 596 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAEL 633
R L E + ++ L+ ++P + + Q + L
Sbjct: 1083 YTRRCDLR-EQNGRRSMLVKDIPNVETAVSVLQEIVAL 1119
>gi|239825634|ref|YP_002948258.1| transcription-repair coupling factor [Geobacillus sp. WCH70]
gi|239805927|gb|ACS22992.1| transcription-repair coupling factor [Geobacillus sp. WCH70]
Length = 1177
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 230/591 (38%), Positives = 355/591 (60%), Gaps = 18/591 (3%)
Query: 52 QKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERET 110
Q + DL++LY R K + P EF A FPY+ T DQ ++ +++RD+ E +
Sbjct: 585 QDIAEDLIKLYAEREASKGYAFSPDTEMQREFEAAFPYQETEDQLRSIEEIKRDM-ESDK 643
Query: 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIK 170
PMDRL+CGDVG+GKTEVALRA F + GKQ L PT +LA+QH++ V ERF +P I
Sbjct: 644 PMDRLLCGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGFP-IN 702
Query: 171 VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK 230
VGLL+RF+++ ++ E + +K G +++++GTH LL V + +LGLL++DEEQRFGV K
Sbjct: 703 VGLLNRFRTRKQQAETIKGLKDGTIDMVIGTHRLLSKDVQFKDLGLLIIDEEQRFGVTHK 762
Query: 231 EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVI 290
EKI K ++DVLTL+ATPIPRTL++++ G RD S+I TPP R P++T++ ++ E +
Sbjct: 763 EKIKQLKANIDVLTLTATPIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEYTPELIR 822
Query: 291 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ 350
AI+ EL R GQVF++ RI+ ++ + + Q P + AHG+ +LE TM F +
Sbjct: 823 EAIERELARDGQVFFLYNRIEDIDAKAEEISQLVPEARVTYAHGRMTENELESTMLAFLE 882
Query: 351 GAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 410
G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y
Sbjct: 883 GQYDVLVTTTIIETGVDIPNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKD 942
Query: 411 SLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML 470
+L++ A +RL A++E ELG GF++A +D+ IRG G I G QQ G + +VG DL+ +ML
Sbjct: 943 KVLNEDAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQML 1002
Query: 471 FESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLM 530
E++ K + V ID+ ++ +P YI+ ++M KA E M
Sbjct: 1003 KEAIEK-RKGIKQEEAKPEVTIDLEVDAYIPDTYISDGLQKIDMYKRF-KAVET-----M 1055
Query: 531 QFTESLRRQ----YGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGM--KTNMNKK 584
+ E+LR + +G+ P + L + ++ A IG+ I + + + N +K
Sbjct: 1056 EDVEALRDEMLDRFGEYPDEVAYLFQIAEIKVYAKQIGVESIKQQKQQIEILFDENASKD 1115
Query: 585 VFKMMIDSMTSEVHR-NSLTFEGDQIKAELLL-ELPREQLLNWIFQCLAEL 633
V + + + R EG ++K L + EL ++ L +++ L EL
Sbjct: 1116 VEIQRLSKIGRQYGRLFGFGMEGSKLKIVLYIKELKPQEWLMILYETLKEL 1166
>gi|163791051|ref|ZP_02185472.1| transcription-repair coupling factor [Carnobacterium sp. AT7]
gi|159873696|gb|EDP67779.1| transcription-repair coupling factor [Carnobacterium sp. AT7]
Length = 1173
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/494 (42%), Positives = 325/494 (65%), Gaps = 8/494 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ ++KL T W + K K I+ + +L+ELY R ++ + P + E
Sbjct: 556 SEAKTPK-VNKLGGT-EWAKTKKKVATKIEDIADELIELYASREQEVGYAFSPDDAYQEE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++ D+ E++ PMDRL+ GDVG+GKTEVA+RA+F V GKQ
Sbjct: 614 FENAFPYTETDDQLRSTAEIKHDM-EQKKPMDRLLVGDVGYGKTEVAMRAVFKAVQEGKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
A L PT +LA+QH++ + +RF+ +P I++GLLSRF++K ++ E + +K G ++I++GT
Sbjct: 673 AAFLVPTTILAQQHYETMLQRFADFP-IEIGLLSRFRTKKQQNETIAGLKKGQVDIVIGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + + +LGLL+VDEEQRFGVK KEK+ K VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFQDLGLLIVDEEQRFGVKHKEKLKQLKAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ + V A++ E+ RGGQVFY+ R+ +E+ +D LQ
Sbjct: 792 RDLSVIETPPANRYPVQTYVMEQNLGAVREAVEREMARGGQVFYLYNRVATIEKKVDELQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
Q P I AHGQ QLE T+ +F +G +L+ T I+E+G+D+ N NT+ V++
Sbjct: 852 QLIPDARIGYAHGQMTEGQLENTLFQFIEGEYDVLVTTTIIETGVDMPNVNTLFVENADH 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSQLYQLRGRVGRSNRVAYAYFLYQPNKVLNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-VQIDININPRL 500
IRG G + G QQ G + +VG DL+ EML E++++ + + K+ V+ID+ IN L
Sbjct: 972 SIRGAGNLLGSQQHGFIDSVGFDLYSEMLSEAVAR--KRGMDPKEEKTQVEIDLGINAYL 1029
Query: 501 PSEYINHLENPMEM 514
P YI +E+
Sbjct: 1030 PGTYIEDERQKIEI 1043
>gi|430824329|ref|ZP_19442893.1| transcription-repair coupling factor [Enterococcus faecium E0120]
gi|430867735|ref|ZP_19482633.1| transcription-repair coupling factor [Enterococcus faecium E1574]
gi|431744834|ref|ZP_19533700.1| transcription-repair coupling factor [Enterococcus faecium E2071]
gi|430441344|gb|ELA51459.1| transcription-repair coupling factor [Enterococcus faecium E0120]
gi|430550122|gb|ELA89931.1| transcription-repair coupling factor [Enterococcus faecium E1574]
gi|430604994|gb|ELB42416.1| transcription-repair coupling factor [Enterococcus faecium E2071]
Length = 1173
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSATEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVADQRQKIEI 1043
>gi|423388177|ref|ZP_17365403.1| transcription-repair coupling factor [Bacillus cereus BAG1X1-3]
gi|401644367|gb|EJS62059.1| transcription-repair coupling factor [Bacillus cereus BAG1X1-3]
Length = 1176
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 332/527 (62%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 GELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|431387263|ref|ZP_19511626.1| transcription-repair coupling factor [Enterococcus faecium E1627]
gi|431512503|ref|ZP_19515930.1| transcription-repair coupling factor [Enterococcus faecium E1634]
gi|430580820|gb|ELB19286.1| transcription-repair coupling factor [Enterococcus faecium E1627]
gi|430586422|gb|ELB24679.1| transcription-repair coupling factor [Enterococcus faecium E1634]
Length = 1173
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVADQRQKIEI 1043
>gi|314949307|ref|ZP_07852650.1| transcription-repair coupling factor [Enterococcus faecium TX0082]
gi|313644313|gb|EFS08893.1| transcription-repair coupling factor [Enterococcus faecium TX0082]
Length = 1173
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGSIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVADQRQKIEI 1043
>gi|431043717|ref|ZP_19493007.1| transcription-repair coupling factor [Enterococcus faecium E1590]
gi|430561305|gb|ELB00575.1| transcription-repair coupling factor [Enterococcus faecium E1590]
Length = 1173
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVADQRQKIEI 1043
>gi|229015456|ref|ZP_04172457.1| Transcription-repair-coupling factor [Bacillus cereus AH1273]
gi|228745840|gb|EEL95841.1| Transcription-repair-coupling factor [Bacillus cereus AH1273]
Length = 1176
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 332/527 (62%), Gaps = 16/527 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 DEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 GELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENIV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + + I + + E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|430837160|ref|ZP_19455135.1| transcription-repair coupling factor [Enterococcus faecium E0680]
gi|430839946|ref|ZP_19457882.1| transcription-repair coupling factor [Enterococcus faecium E0688]
gi|430859208|ref|ZP_19476823.1| transcription-repair coupling factor [Enterococcus faecium E1552]
gi|430487590|gb|ELA64310.1| transcription-repair coupling factor [Enterococcus faecium E0680]
gi|430490186|gb|ELA66728.1| transcription-repair coupling factor [Enterococcus faecium E0688]
gi|430544050|gb|ELA84095.1| transcription-repair coupling factor [Enterococcus faecium E1552]
Length = 1173
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVADQRQKIEI 1043
>gi|94986749|ref|YP_594682.1| transcription-repair coupling factor [Lawsonia intracellularis
PHE/MN1-00]
gi|442555575|ref|YP_007365400.1| transcription-repair coupling factor [Lawsonia intracellularis N343]
gi|94730998|emb|CAJ54361.1| transcription-repair coupling factor (superfamily II helicase)
[Lawsonia intracellularis PHE/MN1-00]
gi|441493022|gb|AGC49716.1| transcription-repair coupling factor [Lawsonia intracellularis N343]
Length = 1155
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 227/532 (42%), Positives = 322/532 (60%), Gaps = 7/532 (1%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK-NPAIAEFAAQFPYEPTPDQK 95
+T+W+ K K K +I+K+ D++E+Y R K YP EF A F +E TPDQ
Sbjct: 555 STSWQASKDKAKKSIEKVAEDIIEMYAWRKVAKGFTYPPVGDLYREFEASFGFEETPDQA 614
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
+A DV D+ E+ PMDRL+CGDVGFGKTEVALRA F S G+Q +L PT VLA+QH
Sbjct: 615 RAIQDVLADM-EKSEPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQH 673
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
+ R S + I VGLLSRF +++E G ++++VGTH LL V NLG
Sbjct: 674 YYTFRSRLSGF-GINVGLLSRFVPLQKQKEIFKAASSGQIDVLVGTHKLLSDSVSLPNLG 732
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
LL++DEEQRFGVK KEK+ K +VDVLTL+ATPIPRTL L+++G + S+I T PPER
Sbjct: 733 LLILDEEQRFGVKHKEKLKKMKKNVDVLTLTATPIPRTLQLSMSGICELSVIETAPPERK 792
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
P+ T + +KEK+ ++ EL R GQVF+V R++GLE+ ++F+++ P + +AHGQ
Sbjct: 793 PVATAIIKKNKEKLKEILERELAREGQVFWVYNRVQGLEQIVNFVKELVPEARVGVAHGQ 852
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
+QLEE + F + IL+CT I+ESGLD ANT+IV FGL QLYQLRGRVG
Sbjct: 853 MPEKQLEENIHAFWHAELDILVCTAIIESGLDFPRANTLIVDQAHMFGLGQLYQLRGRVG 912
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+D++A+A D LS+QA ERL + E LG GFQ+A +D+ IRG G I GE Q+
Sbjct: 913 RSDRQAYAVFVISDLESLSEQARERLRIILELDYLGAGFQVAMEDLRIRGAGNILGEAQS 972
Query: 456 GDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMV 515
G + VG++L+ EML E+++K+ V S P ++ + + +P YI+ +
Sbjct: 973 GHISRVGIELYLEMLEEAVTKLKGEGVTSYP--ETELTLGLTAHIPQNYISDSHERLRWY 1030
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITK 567
A Q + + LR ++G P ++ + L ++ + + K
Sbjct: 1031 KALSSA--QSVMARNEIELELRDRFGVLPNELKAFIAVLNFKQFLTESQVIK 1080
>gi|380694751|ref|ZP_09859610.1| transcription-repair coupling factor [Bacteroides faecis MAJ27]
Length = 1123
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 236/607 (38%), Positives = 350/607 (57%), Gaps = 31/607 (5%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
++ + + PR L+KL T AWE+ K + K I+ + DL++LY R ++K Y P +
Sbjct: 490 YKGKDGEAPR-LNKLG-TGAWEKLKDRTKAKIKDIARDLIKLYSQRRQEKGFSYSPDSFL 547
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ KA +DV+ D+ E E PMDRL+CGDVGFGKTEVA+RA F V+
Sbjct: 548 QRELEASFIYEDTPDQSKATMDVKADM-ESERPMDRLVCGDVGFGKTEVAIRAAFKAVAD 606
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ VL PT VLA QHF ER P +V LSR ++ A+ + L ++ G +NI+
Sbjct: 607 NKQVAVLVPTTVLAYQHFQTFRERLKNLP-CRVEYLSRARTAAQSKAVLKGLREGEVNIL 665
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +LG V + +LGLL++DEEQ+FGV KEK+ K++VD LT++ATPIPRTL +L
Sbjct: 666 IGTHRILGKDVQFKDLGLLIIDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSL 725
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+ISTPPP R PI+T + F++E + AI +E+ R GQVF+V RI L E
Sbjct: 726 MGARDLSVISTPPPNRYPIQTEVHTFNEEVITDAINFEMSRNGQVFFVNNRIANLPELKA 785
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+++ P +AI HGQ QLE+ + F +L+ T I+ESG+DI NANTII+
Sbjct: 786 MIERHIPDCRVAIGHGQMEPAQLEQIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQ 845
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q FGL+ L+Q+RGRVGR++K+A YL P S L+ + RL A+E +LG G +A
Sbjct: 846 AQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTAEGKRRLQAIENFSDLGSGIHIAM 905
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV--DEHCVISVP---------- 486
+D+ IRG G + G +Q+G + ++G + + ++L E++ ++ DE +
Sbjct: 906 QDLDIRGAGNLLGAEQSGFIADLGYETYQKILAEAVHELRNDEFAELYADEIKGEGQISG 965
Query: 487 ---YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGK 542
QI+ ++ LP+ Y+ M + E + ++D+ F L ++G
Sbjct: 966 EGFVDECQIESDLELLLPATYVTGSSERMLLYRELDGLTLDKDVD---DFRFRLEDRFGP 1022
Query: 543 EPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMN-------KKVFKMMIDSMTS 595
P + LL+ + +RR+A +G+ K++ G + + N + F MID M
Sbjct: 1023 VPPETQELLRIVPLRRLATRLGVEKVFLKGGRMTLFFVSNADSPFYQSQAFGKMIDYMMK 1082
Query: 596 EVHRNSL 602
R L
Sbjct: 1083 YTRRCDL 1089
>gi|448236357|ref|YP_007400415.1| transcription-repair-coupling factor [Geobacillus sp. GHH01]
gi|445205199|gb|AGE20664.1| transcription-repair-coupling factor [Geobacillus sp. GHH01]
Length = 1177
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 220/550 (40%), Positives = 341/550 (62%), Gaps = 20/550 (3%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ + KL + W++ K K + ++Q + DL++LY R K + P E
Sbjct: 558 SEGKEPK-IYKLGGSE-WKKVKRKVESSVQDIAEDLIKLYAEREASKGYAFSPDTEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A FPY+ T DQ ++ +++RD+ E + PMDRL+CGDVG+GKTEVALRA F + GKQ
Sbjct: 616 FEAAFPYQETEDQLRSIEEIKRDM-ESDKPMDRLLCGDVGYGKTEVALRAAFKAIMDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ V ERF +P IKVGLL+RF++K ++ E + +K G +++++GT
Sbjct: 675 VAFLVPTTILAQQHYETVRERFQGFP-IKVGLLNRFRTKKQQAETIKGLKDGTIDMVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL V + +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVKFKDLGLLIIDEEQRFGVAHKEKIKQLKANIDVLTLTATPIPRTLHMSMIGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ E V AI+ EL R GQVF++ I+ ++ + +
Sbjct: 794 RDLSIIETPPENRFPVQTYVMEYTPELVKEAIERELARDGQVFFLYNHIEDIDLKAEEIA 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
Q P + HG+ +LE T+ F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 QLVPEARVTYVHGRMSETELESTILAFLEGQYDVLVTTTIIETGIDIPNVNTLIVYDADR 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEAAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV------DEHCVISVPYKSVQIDIN 495
IRG G I G +Q G + +VG DL+ +ML E++ K DE V ID+
Sbjct: 974 SIRGAGNILGAEQHGFIDSVGFDLYSQMLKEAIEKRRGIKREDEQ-------PDVVIDVE 1026
Query: 496 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 555
++ +PS YI +EM + A + + + + E + ++G P + L +
Sbjct: 1027 VDAYIPSTYIADELQKIEMYKRFK--AVETLEDIEELREEMVDRFGDYPDEVAYLFQIAE 1084
Query: 556 VRRMAADIGI 565
++ +A +G+
Sbjct: 1085 LKVLAKQLGV 1094
>gi|313148344|ref|ZP_07810537.1| transcription-repair coupling factor [Bacteroides fragilis 3_1_12]
gi|313137111|gb|EFR54471.1| transcription-repair coupling factor [Bacteroides fragilis 3_1_12]
Length = 1128
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 247/638 (38%), Positives = 366/638 (57%), Gaps = 32/638 (5%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 78
++ E + PR L+KL T AWE+ K + K I+ + DL++LY R ++K Y P +
Sbjct: 493 YKGKEGEAPR-LNKLG-TGAWEKLKERTKTKIKDIARDLIKLYSQRREEKGFAYSPDSFL 550
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E A F YE TPDQ KA DV++D+ ER+ PMDRL+CGDVGFGKTEVA+RA F V+
Sbjct: 551 QRELEASFIYEDTPDQSKATADVKQDM-ERDMPMDRLVCGDVGFGKTEVAIRAAFKAVAD 609
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
KQ VL PT VLA QHF +R P +V LSR ++ A+ + + ++ G +NI+
Sbjct: 610 NKQVAVLVPTTVLAYQHFQTFRDRLKGLP-CRVEYLSRARTAAQAKAVIKGLETGDVNIL 668
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH +LG V + +LGLL++DEEQ+FGV KEK+ K++VD LT++ATPIPRTL +L
Sbjct: 669 IGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSL 728
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+ISTPPP R PI+T + FS+E + AI +E+ R GQVF V RI L E
Sbjct: 729 MGARDLSVISTPPPNRYPIQTEVHTFSEEVIADAINFEMSRNGQVFLVNNRIANLPELKA 788
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
+ + P IAI HGQ +LE+ + F +LI T I+ESG+DI NANTII+
Sbjct: 789 MILRRIPDCRIAIGHGQMEPVELEQIIFGFVNYDYDVLIATTIIESGIDIPNANTIIINQ 848
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
Q FGL+ L+Q+RGRVGR++K+A YL P S L+ +A RL A+E +LG G +A
Sbjct: 849 AQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSGIHIAM 908
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHC-----------VISV 485
+D+ IRG G + G +Q+G + ++G + + ++L E++ K DE +IS
Sbjct: 909 QDLDIRGAGNMLGAEQSGFIADLGYETYQKILSEAVHELKTDEFAELYADELKGEGIISG 968
Query: 486 P--YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGK 542
+ Q++ ++ LP+ Y+ M + E + ++D+ F L ++G
Sbjct: 969 EEFVEECQVESDLELLLPANYVTGSSERMLLYRELDGLTLDKDVNA---FRLRLEDRFGP 1025
Query: 543 EPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMN-------KKVFKMMIDSMTS 595
P E LL+ + +RR+AA +G+ K++ G + + N F MID M
Sbjct: 1026 VPPETEELLRIVPLRRLAARLGVEKVFLKGGRMTLFFVSNPDSPYYQSAAFGKMIDYMMK 1085
Query: 596 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAEL 633
R L E + ++ L+ ++P + + Q + L
Sbjct: 1086 YTRRCDLR-EQNGRRSMLVKDIPNVETAVSVLQEIVAL 1122
>gi|397663513|ref|YP_006505051.1| transcription-repair coupling factor [Legionella pneumophila subsp.
pneumophila]
gi|395126924|emb|CCD05107.1| transcription-repair coupling factor [Legionella pneumophila subsp.
pneumophila]
Length = 1153
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 230/573 (40%), Positives = 340/573 (59%), Gaps = 9/573 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA-IAEFAAQFPYEPTPDQKKAF 98
W++ K K I + ++L++LY R Q Y N + +FA+ FP+ TPDQ +A
Sbjct: 553 WQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFNQSEYIKFASGFPFTETPDQLQAI 612
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+ +D+ + PMDRLICGDVGFGKTEVA+RA F V GKQ +LAPT +LA QHF+
Sbjct: 613 EQIIKDM-QSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAPTTLLAGQHFES 671
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+RF+++P + + LLSRF+S E E L + G ++I++GTH L + + + NLGLL+
Sbjct: 672 FRDRFAEFP-VNIELLSRFRSNKESEAVLAALHSGKVDIVIGTHKLFQNNISFKNLGLLI 730
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEE RFGVKQKE I S + VD+L+++ATPIPRTL +A+ G RD SLI+TPP +RL IK
Sbjct: 731 IDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIRDISLIATPPAKRLAIK 790
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + AI E+ RGGQVFY+ ++ +E L+ P I AHGQ
Sbjct: 791 TFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIERVCQDLEALVPEAKIQSAHGQMRE 850
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
RQLE M F +L+CT I+E+G+DI ANTII+ +FGLAQL+QLRGRVGR+
Sbjct: 851 RQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLHQLRGRVGRSH 910
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+A+AYL P++ LL+ A++RL A+ +LG GF LA D+ IRG G + GE+Q+G++
Sbjct: 911 HQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGELLGEEQSGNM 970
Query: 459 GNVGVDLFFEMLFESLS--KVDEHCVISVP-YKSVQIDININPRLPSEYINHLENPMEMV 515
+G +LF EML +++ K + +S P ++ +ID+ I+ +P +YI + N + M
Sbjct: 971 HAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEIDLRISAIIPEDYIGDIHNRLIMY 1030
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 575
A + L + L ++G P ++ L ++ A +GI KI AS +
Sbjct: 1031 KRIANA--KTTQQLRELQIELIDRFGLLPQPVKHLFLITELKLKAEQLGIQKISASAQQG 1088
Query: 576 GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 608
+ + + + S+ +VH EG Q
Sbjct: 1089 KLDFSEKPSIDPGTLISLI-QVHAKRYQMEGPQ 1120
>gi|359727780|ref|ZP_09266476.1| transcription-repair coupling factor [Leptospira weilii str.
2006001855]
gi|417779974|ref|ZP_12427750.1| transcription-repair coupling factor [Leptospira weilii str.
2006001853]
gi|410779943|gb|EKR64546.1| transcription-repair coupling factor [Leptospira weilii str.
2006001853]
Length = 1171
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 230/559 (41%), Positives = 354/559 (63%), Gaps = 15/559 (2%)
Query: 25 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 83
T+ PR L L +T W++ K + + A++ + DL+++Y +RLK + +P + EF
Sbjct: 564 TESPR-LDSLGKST-WKKTKDRVQKAVEILAEDLVQMYSNRLKLQGYAFPPDTIYQEEFE 621
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG+Q M
Sbjct: 622 AEFEYEETPDQIEAIEAVKKDL-ESSVPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIM 680
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
+LAPT +LA QH++ RF YP ++V L+SRF++ AE E L G ++++VGTH+
Sbjct: 681 MLAPTTILALQHYNTFKNRFQNYP-LRVELVSRFKTSAEIREILSDFSLGKIDMVVGTHA 739
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263
+L ++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALTG R+
Sbjct: 740 ILSPKLKPKNLGLLIIDEEQRFGVNHKEAIKRFKNLVDVLTLTATPIPRTLHMALTGIRE 799
Query: 264 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323
S+I+TPP R ++T++ ++ + AI+ E+ R GQVFY+ R++ +E+ +L +
Sbjct: 800 LSIIATPPKNRQSVETYVLEEDEDLIADAIRNEIQRDGQVFYLYNRVETIEQETKYLGEI 859
Query: 324 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 383
P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+ FG
Sbjct: 860 VPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFG 919
Query: 384 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 443
L+QLYQ+RGRVGR+D++A AYL P ++++QA +RL + E +ELG GF++A +D+ I
Sbjct: 920 LSQLYQIRGRVGRSDRKAFAYLLLPKDRVVTEQAEKRLNTIYEYQELGSGFKVAMRDLEI 979
Query: 444 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININPRLPS 502
RG G + G++Q+GD+ VG DL+ +ML E++++V E + V + +N N +P
Sbjct: 980 RGAGNLLGKEQSGDIMEVGFDLYVQMLEEAIARVKGEEVAVEV---RTSVTLNTNFFIPE 1036
Query: 503 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYVRRMA 560
YI+ +E + E A +D+ + + + ++G P ILL+K +R +A
Sbjct: 1037 TYISDTRQKIEFYKKFEGA--RDLQEIDEVYREMEERFGDPPEDARTFILLEK--IRTLA 1092
Query: 561 ADIGITKIYASGKMVGMKT 579
+++G + + MK+
Sbjct: 1093 SNLGFESVAEMKDEIKMKS 1111
>gi|315499869|ref|YP_004088672.1| transcription-repair coupling factor [Asticcacaulis excentricus CB
48]
gi|315417881|gb|ADU14521.1| transcription-repair coupling factor [Asticcacaulis excentricus CB
48]
Length = 1168
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 228/539 (42%), Positives = 329/539 (61%), Gaps = 16/539 (2%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYEPTPDQK 95
+ +W+ RK K K +++M L++L R LK + P + EF AQFPYE T DQ
Sbjct: 567 SASWQARKAKAKEKLREMADGLIQLAAARALKVGQQIDPPSGLYDEFCAQFPYEETEDQL 626
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
A DV DL+ + PMDRLICGDVGFGKTEVALRA F V +G+Q ++ PT +LA+QH
Sbjct: 627 NAIHDVLDDLS-KGHPMDRLICGDVGFGKTEVALRAAFVVAMSGQQVAIICPTTLLARQH 685
Query: 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 215
F S+RF +P I+V LSR ++ E +E D +K G + +++GTH+LL +V + +LG
Sbjct: 686 FKTFSQRFQGWP-IRVRHLSRMVTRKEADETRDGLKSGEVEVVIGTHALLSEQVGFKDLG 744
Query: 216 LLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL 275
L++VDEEQ FGVK KEK+ +F+ V +LTLSATPIPRTL +AL+G R+ S+I+TPP +RL
Sbjct: 745 LVIVDEEQHFGVKHKEKLKAFRADVHMLTLSATPIPRTLQMALSGIREMSIIATPPVDRL 804
Query: 276 PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQ 335
++T++ F + A+ E RGGQ +YV+PR+K L + FL++ P V + HGQ
Sbjct: 805 AVRTYVLPFDAVSIREALLREKYRGGQAYYVVPRLKDLPDLERFLREQVPEVKFIVGHGQ 864
Query: 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395
QLEE M F G +L+ T IVESGLD+ ANT+IV FGLAQLYQ+RGRVG
Sbjct: 865 MTPTQLEEVMTAFYDGQYDVLLATTIVESGLDVPTANTLIVHRADMFGLAQLYQIRGRVG 924
Query: 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQT 455
R+ A AYL +LS+ + +RL L+ LG GFQLA D+ IRG G + G +Q+
Sbjct: 925 RSKTRAFAYLTTQPHQILSEASEKRLKVLQSLDNLGAGFQLASHDLDIRGGGNLLGNEQS 984
Query: 456 GDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDININPRLPSEYINHLENP 511
G + +GV+L+ +ML +++ S+ DE + + S QI+ +P +YI L
Sbjct: 985 GHIREIGVELYQQMLEDAVNELRSRADEPATDNRGW-SPQINAGAAVMIPEDYIPDLNIR 1043
Query: 512 MEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITK 567
+ + V+EAEK +++ L ++G P E LLK + ++ + + + K
Sbjct: 1044 LSLYRRVSEAEKREDRE-----ALAAELIDRFGPIPEEAEQLLKVVGIKGLCREANVAK 1097
>gi|423471701|ref|ZP_17448445.1| transcription-repair coupling factor [Bacillus cereus BAG6O-2]
gi|402430799|gb|EJV62873.1| transcription-repair coupling factor [Bacillus cereus BAG6O-2]
Length = 1176
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/528 (40%), Positives = 334/528 (63%), Gaps = 18/528 (3%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPALMREAIERELARGGQIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F +G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 GELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAERRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLSK---VD--EHCVISVPYKSVQIDININPRLPSEYINHLENPME 513
+VG DL+ +ML +++ + D E+ V +V+ID+ ++ LP YI+ + +
Sbjct: 991 DSVGFDLYSQMLKDAIEQRRGTDGVENTV------NVEIDLEVDAYLPDAYISDSKQKIM 1044
Query: 514 MVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
M + +A +DI L E + ++G P + LL+ ++ +A
Sbjct: 1045 MYKQFRGISAIEDIEELQ---EEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|114777171|ref|ZP_01452182.1| transcription-repair coupling factor [Mariprofundus ferrooxydans
PV-1]
gi|114552316|gb|EAU54799.1| transcription-repair coupling factor [Mariprofundus ferrooxydans
PV-1]
Length = 1109
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 225/545 (41%), Positives = 330/545 (60%), Gaps = 11/545 (2%)
Query: 30 TLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY----PKNPAIAEFAAQ 85
L+KL + W+R + + K + M +L+++ R RPP P A EFAA+
Sbjct: 507 ALNKLG-SEKWKRTRERVKRDLLAMAHELIDIEAARTSASRPPCLLQGPLLDAYEEFAAR 565
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
FP+E T DQ +A V DL + PMDR+ICGDVGFGKTEVA+RA F V +G+Q VL
Sbjct: 566 FPFEETDDQAQAIDAVLTDLA-LDKPMDRVICGDVGFGKTEVAMRAAFVVAESGRQVAVL 624
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
APT VLA QH+ +ERF D+KV ++SR Q K E E+ + G + IIVGTH LL
Sbjct: 625 APTTVLANQHYASFAERFIGT-DLKVAMISRLQGKKEVEQICRGLAGGDIRIIVGTHRLL 683
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
+ +LG+++VDEEQRFGVK K+K+ S SVD+LTL+ATPIPRTL+ ++G R S
Sbjct: 684 SDTFEFADLGMVIVDEEQRFGVKHKQKLKSLHASVDLLTLTATPIPRTLHQTMSGLRSVS 743
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+ISTPP ER I+T +S+F AI+ EL RGGQV+Y+ ++ +E L++ P
Sbjct: 744 IISTPPAEREAIRTMVSSFDPHIAREAIRRELYRGGQVYYLHNHVQSIERITARLREDVP 803
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
+I IAHGQ +L+ M F +G + IL+CT I+ESGLD+ NANT+IV+ GL+
Sbjct: 804 EAEIGIAHGQMTPAELDRQMLAFYEGRLHILVCTTIIESGLDVANANTLIVERADLLGLS 863
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
QL+Q+RGRVGR+ ++A+AYLF PD ++ A ERL A+ E ELG GF LA +DM IRG
Sbjct: 864 QLHQIRGRVGRSHRQAYAYLFTPDARAMTADARERLQAIAEHSELGAGFLLARQDMEIRG 923
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYI 505
G + G +Q+G + +G+D++ +ML +++++ + P + + + + +N LP +Y+
Sbjct: 924 AGNLLGAEQSGRIDEIGLDMYLDMLSDAVAEA--RGKMPKPKQPLDMHLGVNAILPPDYM 981
Query: 506 NHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGI 565
+ + + A+ D + F E R +G P + L+ +R A + +
Sbjct: 982 PQAGERLNLYRRIAR-ADDDSQITLLFEEMTDR-FGHMPDEAKYCLENARIRWRAQALHL 1039
Query: 566 TKIYA 570
+ I A
Sbjct: 1040 SGIRA 1044
>gi|431753373|ref|ZP_19542047.1| transcription-repair coupling factor [Enterococcus faecium E2620]
gi|430612280|gb|ELB49331.1| transcription-repair coupling factor [Enterococcus faecium E2620]
Length = 1173
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVADQRQKIEI 1043
>gi|431763489|ref|ZP_19552039.1| transcription-repair coupling factor [Enterococcus faecium E3548]
gi|430622262|gb|ELB58999.1| transcription-repair coupling factor [Enterococcus faecium E3548]
Length = 1173
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVADQRQKIEI 1043
>gi|425059177|ref|ZP_18462527.1| transcription-repair coupling factor [Enterococcus faecium 504]
gi|403036242|gb|EJY47599.1| transcription-repair coupling factor [Enterococcus faecium 504]
Length = 1173
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWAKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVADQRQKIEI 1043
>gi|293553692|ref|ZP_06674316.1| transcription-repair coupling factor [Enterococcus faecium E1039]
gi|431449126|ref|ZP_19513967.1| transcription-repair coupling factor [Enterococcus faecium E1630]
gi|431761117|ref|ZP_19549704.1| transcription-repair coupling factor [Enterococcus faecium E3346]
gi|291602267|gb|EFF32495.1| transcription-repair coupling factor [Enterococcus faecium E1039]
gi|430585518|gb|ELB23803.1| transcription-repair coupling factor [Enterococcus faecium E1630]
gi|430622491|gb|ELB59212.1| transcription-repair coupling factor [Enterococcus faecium E3346]
Length = 1173
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWAKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVADQRQKIEI 1043
>gi|259047960|ref|ZP_05738361.1| transcription-repair coupling factor [Granulicatella adiacens ATCC
49175]
gi|259035380|gb|EEW36635.1| transcription-repair coupling factor [Granulicatella adiacens ATCC
49175]
Length = 1180
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/505 (41%), Positives = 323/505 (63%), Gaps = 6/505 (1%)
Query: 11 CGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 70
I + ++ K P+ L+KL T W + K K I+ + +L+ELY R +K
Sbjct: 544 VSQIKLVQKYVSSDAKVPK-LNKLG-GTEWAKTKRKVAAKIEDIADELIELYAKRDAEKG 601
Query: 71 PPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 129
+ ++ EF FPY T DQ ++ +++ D+ +++ PMDRL+ GDVG+GKTEVA+
Sbjct: 602 YAFSRDTVEQQEFEQAFPYTETQDQLRSVAEIKEDM-QKDKPMDRLLVGDVGYGKTEVAM 660
Query: 130 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 189
RA+F V GKQA VL PT +LA+QH++ +RFS YP K+GLLSRF+SK E+EE +
Sbjct: 661 RAVFKAVMDGKQAAVLVPTTILAEQHYENFVQRFSDYP-FKIGLLSRFRSKKEQEETIKK 719
Query: 190 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 249
++ G ++I++GTH LL V + +LGLL+VDEEQRFGVK KE++ K VDVLTL+ATP
Sbjct: 720 LRKGSVDIVIGTHRLLSKDVQFLDLGLLIVDEEQRFGVKHKERLKQLKSQVDVLTLTATP 779
Query: 250 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 309
IPRTL++++ G RD S+I TPP R P++T + + + I+ E+ RGGQVFY+ R
Sbjct: 780 IPRTLHMSMLGVRDLSVIETPPANRYPVQTFVMEQNPMTIRDGIEREMARGGQVFYLYNR 839
Query: 310 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 369
++ +E+ D L+ PG + + HGQ LE + +F +G +L+ T I+E+G+DI
Sbjct: 840 VETIEKKADELRVLVPGCRVGVIHGQMSETTLENILFQFIEGEYDVLVTTTIIETGVDIP 899
Query: 370 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 429
N NT+ +++ GL+QLYQLRGRVGR ++ A+AYL Y +L++ + +RL A+ + E
Sbjct: 900 NVNTLFIENADYMGLSQLYQLRGRVGRTNRIAYAYLMYQPDKVLTEVSEKRLQAMRDFTE 959
Query: 430 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS 489
LG GF++A +D+ IRG G + G+QQ G + +VG DL+ ++L E++ K V S ++
Sbjct: 960 LGSGFKIAMRDLSIRGAGNLLGKQQHGFIDSVGFDLYSQLLSEAVLKKQGKEVKS-DEET 1018
Query: 490 VQIDININPRLPSEYINHLENPMEM 514
V+ID+ I+ +P+ YI +EM
Sbjct: 1019 VEIDLQIDAYIPASYIQDERQKIEM 1043
>gi|431739281|ref|ZP_19528218.1| transcription-repair coupling factor [Enterococcus faecium E1972]
gi|430596111|gb|ELB33962.1| transcription-repair coupling factor [Enterococcus faecium E1972]
Length = 1173
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVADQRQKIEI 1043
>gi|69245443|ref|ZP_00603438.1| Transcription-repair coupling factor [Enterococcus faecium DO]
gi|257879854|ref|ZP_05659507.1| transcription-repair coupling factor [Enterococcus faecium 1,230,933]
gi|257882580|ref|ZP_05662233.1| transcription-repair coupling factor [Enterococcus faecium 1,231,502]
gi|257891695|ref|ZP_05671348.1| transcription-repair coupling factor [Enterococcus faecium 1,231,410]
gi|257894170|ref|ZP_05673823.1| transcription-repair coupling factor [Enterococcus faecium 1,231,408]
gi|260559527|ref|ZP_05831708.1| transcription-repair coupling factor [Enterococcus faecium C68]
gi|261206678|ref|ZP_05921376.1| transcription-repair coupling factor [Enterococcus faecium TC 6]
gi|289565039|ref|ZP_06445493.1| transcription-repair coupling factor [Enterococcus faecium D344SRF]
gi|293563193|ref|ZP_06677649.1| transcription-repair coupling factor [Enterococcus faecium E1162]
gi|293570115|ref|ZP_06681195.1| transcription-repair coupling factor [Enterococcus faecium E1071]
gi|294614900|ref|ZP_06694791.1| transcription-repair coupling factor [Enterococcus faecium E1636]
gi|294623704|ref|ZP_06702537.1| transcription-repair coupling factor [Enterococcus faecium U0317]
gi|314938215|ref|ZP_07845515.1| transcription-repair coupling factor [Enterococcus faecium TX0133a04]
gi|314943110|ref|ZP_07849909.1| transcription-repair coupling factor [Enterococcus faecium TX0133C]
gi|314952240|ref|ZP_07855255.1| transcription-repair coupling factor [Enterococcus faecium TX0133A]
gi|314992098|ref|ZP_07857548.1| transcription-repair coupling factor [Enterococcus faecium TX0133B]
gi|314996281|ref|ZP_07861337.1| transcription-repair coupling factor [Enterococcus faecium TX0133a01]
gi|383329920|ref|YP_005355804.1| transcription-repair coupling factor [Enterococcus faecium Aus0004]
gi|389869735|ref|YP_006377158.1| transcription-repair coupling factor [Enterococcus faecium DO]
gi|406579488|ref|ZP_11054719.1| transcription-repair coupling factor [Enterococcus sp. GMD4E]
gi|406581803|ref|ZP_11056938.1| transcription-repair coupling factor [Enterococcus sp. GMD3E]
gi|406584235|ref|ZP_11059270.1| transcription-repair coupling factor [Enterococcus sp. GMD2E]
gi|406589694|ref|ZP_11064121.1| transcription-repair coupling factor [Enterococcus sp. GMD1E]
gi|410937631|ref|ZP_11369490.1| transcription-repair coupling factor [Enterococcus sp. GMD5E]
gi|415892952|ref|ZP_11550051.1| transcription-repair coupling factor [Enterococcus faecium E4453]
gi|416132452|ref|ZP_11597905.1| transcription-repair coupling factor [Enterococcus faecium E4452]
gi|424789589|ref|ZP_18216234.1| transcription-repair coupling factor [Enterococcus faecium V689]
gi|424797373|ref|ZP_18222971.1| transcription-repair coupling factor [Enterococcus faecium S447]
gi|424847976|ref|ZP_18272513.1| transcription-repair coupling factor [Enterococcus faecium R501]
gi|424859972|ref|ZP_18283947.1| transcription-repair coupling factor [Enterococcus faecium R499]
gi|424866347|ref|ZP_18290187.1| transcription-repair coupling factor [Enterococcus faecium R497]
gi|424952116|ref|ZP_18367154.1| transcription-repair coupling factor [Enterococcus faecium R496]
gi|424957030|ref|ZP_18371782.1| transcription-repair coupling factor [Enterococcus faecium R446]
gi|424960814|ref|ZP_18375295.1| transcription-repair coupling factor [Enterococcus faecium P1986]
gi|424965079|ref|ZP_18379106.1| transcription-repair coupling factor [Enterococcus faecium P1190]
gi|424967591|ref|ZP_18381284.1| transcription-repair coupling factor [Enterococcus faecium P1140]
gi|424970930|ref|ZP_18384404.1| transcription-repair coupling factor [Enterococcus faecium P1139]
gi|424974713|ref|ZP_18387930.1| transcription-repair coupling factor [Enterococcus faecium P1137]
gi|424977476|ref|ZP_18390487.1| transcription-repair coupling factor [Enterococcus faecium P1123]
gi|424979743|ref|ZP_18392577.1| transcription-repair coupling factor [Enterococcus faecium ERV99]
gi|424985876|ref|ZP_18398333.1| transcription-repair coupling factor [Enterococcus faecium ERV69]
gi|424986868|ref|ZP_18399270.1| transcription-repair coupling factor [Enterococcus faecium ERV38]
gi|424989909|ref|ZP_18402151.1| transcription-repair coupling factor [Enterococcus faecium ERV26]
gi|424995153|ref|ZP_18407050.1| transcription-repair coupling factor [Enterococcus faecium ERV168]
gi|424999144|ref|ZP_18410784.1| transcription-repair coupling factor [Enterococcus faecium ERV165]
gi|425001043|ref|ZP_18412579.1| transcription-repair coupling factor [Enterococcus faecium ERV161]
gi|425004986|ref|ZP_18416269.1| transcription-repair coupling factor [Enterococcus faecium ERV102]
gi|425006994|ref|ZP_18418146.1| transcription-repair coupling factor [Enterococcus faecium ERV1]
gi|425011305|ref|ZP_18422214.1| transcription-repair coupling factor [Enterococcus faecium E422]
gi|425012933|ref|ZP_18423690.1| transcription-repair coupling factor [Enterococcus faecium E417]
gi|425017675|ref|ZP_18428171.1| transcription-repair coupling factor [Enterococcus faecium C621]
gi|425020431|ref|ZP_18430736.1| transcription-repair coupling factor [Enterococcus faecium C497]
gi|425030235|ref|ZP_18435429.1| transcription-repair coupling factor [Enterococcus faecium C1904]
gi|425033017|ref|ZP_18438020.1| transcription-repair coupling factor [Enterococcus faecium 515]
gi|425036370|ref|ZP_18441133.1| transcription-repair coupling factor [Enterococcus faecium 514]
gi|425038382|ref|ZP_18443000.1| transcription-repair coupling factor [Enterococcus faecium 513]
gi|425041983|ref|ZP_18446355.1| transcription-repair coupling factor [Enterococcus faecium 511]
gi|425046802|ref|ZP_18450790.1| transcription-repair coupling factor [Enterococcus faecium 510]
gi|425048031|ref|ZP_18451956.1| transcription-repair coupling factor [Enterococcus faecium 509]
gi|425053674|ref|ZP_18457204.1| transcription-repair coupling factor [Enterococcus faecium 506]
gi|425061483|ref|ZP_18464709.1| transcription-repair coupling factor [Enterococcus faecium 503]
gi|427397650|ref|ZP_18890132.1| transcription-repair coupling factor [Enterococcus durans
FB129-CNAB-4]
gi|430821492|ref|ZP_19440099.1| transcription-repair coupling factor [Enterococcus faecium E0045]
gi|430827194|ref|ZP_19445358.1| transcription-repair coupling factor [Enterococcus faecium E0164]
gi|430830008|ref|ZP_19448077.1| transcription-repair coupling factor [Enterococcus faecium E0269]
gi|430832569|ref|ZP_19450612.1| transcription-repair coupling factor [Enterococcus faecium E0333]
gi|430847157|ref|ZP_19465004.1| transcription-repair coupling factor [Enterococcus faecium E1133]
gi|430861026|ref|ZP_19478618.1| transcription-repair coupling factor [Enterococcus faecium E1573]
gi|430906593|ref|ZP_19485028.1| transcription-repair coupling factor [Enterococcus faecium E1575]
gi|430964159|ref|ZP_19487607.1| transcription-repair coupling factor [Enterococcus faecium E1576]
gi|431014812|ref|ZP_19490354.1| transcription-repair coupling factor [Enterococcus faecium E1578]
gi|431216468|ref|ZP_19501219.1| transcription-repair coupling factor [Enterococcus faecium E1620]
gi|431239323|ref|ZP_19503626.1| transcription-repair coupling factor [Enterococcus faecium E1622]
gi|431265346|ref|ZP_19506048.1| transcription-repair coupling factor [Enterococcus faecium E1623]
gi|431312217|ref|ZP_19508867.1| transcription-repair coupling factor [Enterococcus faecium E1626]
gi|431560975|ref|ZP_19519607.1| transcription-repair coupling factor [Enterococcus faecium E1731]
gi|431747454|ref|ZP_19536248.1| transcription-repair coupling factor [Enterococcus faecium E2134]
gi|431749953|ref|ZP_19538683.1| transcription-repair coupling factor [Enterococcus faecium E2297]
gi|431756205|ref|ZP_19544843.1| transcription-repair coupling factor [Enterococcus faecium E2883]
gi|431766077|ref|ZP_19554573.1| transcription-repair coupling factor [Enterococcus faecium E4215]
gi|431768635|ref|ZP_19557069.1| transcription-repair coupling factor [Enterococcus faecium E1321]
gi|431771729|ref|ZP_19560106.1| transcription-repair coupling factor [Enterococcus faecium E1644]
gi|431774660|ref|ZP_19562965.1| transcription-repair coupling factor [Enterococcus faecium E2369]
gi|431777754|ref|ZP_19566005.1| transcription-repair coupling factor [Enterococcus faecium E2560]
gi|431780450|ref|ZP_19568629.1| transcription-repair coupling factor [Enterococcus faecium E4389]
gi|431783148|ref|ZP_19571270.1| transcription-repair coupling factor [Enterococcus faecium E6012]
gi|431784104|ref|ZP_19572149.1| transcription-repair coupling factor [Enterococcus faecium E6045]
gi|447913805|ref|YP_007395217.1| Transcription-repair coupling factor [Enterococcus faecium NRRL
B-2354]
gi|68195825|gb|EAN10261.1| Transcription-repair coupling factor [Enterococcus faecium DO]
gi|257814082|gb|EEV42840.1| transcription-repair coupling factor [Enterococcus faecium 1,230,933]
gi|257818238|gb|EEV45566.1| transcription-repair coupling factor [Enterococcus faecium 1,231,502]
gi|257828055|gb|EEV54681.1| transcription-repair coupling factor [Enterococcus faecium 1,231,410]
gi|257830549|gb|EEV57156.1| transcription-repair coupling factor [Enterococcus faecium 1,231,408]
gi|260074626|gb|EEW62947.1| transcription-repair coupling factor [Enterococcus faecium C68]
gi|260079171|gb|EEW66864.1| transcription-repair coupling factor [Enterococcus faecium TC 6]
gi|289163246|gb|EFD11092.1| transcription-repair coupling factor [Enterococcus faecium D344SRF]
gi|291587487|gb|EFF19371.1| transcription-repair coupling factor [Enterococcus faecium E1071]
gi|291592186|gb|EFF23804.1| transcription-repair coupling factor [Enterococcus faecium E1636]
gi|291596919|gb|EFF28137.1| transcription-repair coupling factor [Enterococcus faecium U0317]
gi|291604843|gb|EFF34321.1| transcription-repair coupling factor [Enterococcus faecium E1162]
gi|313589525|gb|EFR68370.1| transcription-repair coupling factor [Enterococcus faecium TX0133a01]
gi|313593312|gb|EFR72157.1| transcription-repair coupling factor [Enterococcus faecium TX0133B]
gi|313595635|gb|EFR74480.1| transcription-repair coupling factor [Enterococcus faecium TX0133A]
gi|313598169|gb|EFR77014.1| transcription-repair coupling factor [Enterococcus faecium TX0133C]
gi|313642411|gb|EFS06991.1| transcription-repair coupling factor [Enterococcus faecium TX0133a04]
gi|364092990|gb|EHM35305.1| transcription-repair coupling factor [Enterococcus faecium E4453]
gi|364093287|gb|EHM35570.1| transcription-repair coupling factor [Enterococcus faecium E4452]
gi|378939614|gb|AFC64686.1| Transcription-repair coupling factor [Enterococcus faecium Aus0004]
gi|388534984|gb|AFK60176.1| transcription-repair coupling factor [Enterococcus faecium DO]
gi|402918625|gb|EJX39297.1| transcription-repair coupling factor [Enterococcus faecium R501]
gi|402921220|gb|EJX41679.1| transcription-repair coupling factor [Enterococcus faecium S447]
gi|402921865|gb|EJX42283.1| transcription-repair coupling factor [Enterococcus faecium V689]
gi|402926050|gb|EJX46118.1| transcription-repair coupling factor [Enterococcus faecium R499]
gi|402927723|gb|EJX47658.1| transcription-repair coupling factor [Enterococcus faecium R496]
gi|402938827|gb|EJX57800.1| transcription-repair coupling factor [Enterococcus faecium R497]
gi|402944662|gb|EJX63060.1| transcription-repair coupling factor [Enterococcus faecium R446]
gi|402944959|gb|EJX63338.1| transcription-repair coupling factor [Enterococcus faecium P1190]
gi|402945751|gb|EJX64082.1| transcription-repair coupling factor [Enterococcus faecium P1986]
gi|402954081|gb|EJX71736.1| transcription-repair coupling factor [Enterococcus faecium P1140]
gi|402955670|gb|EJX73181.1| transcription-repair coupling factor [Enterococcus faecium P1137]
gi|402960423|gb|EJX77567.1| transcription-repair coupling factor [Enterococcus faecium P1139]
gi|402964959|gb|EJX81707.1| transcription-repair coupling factor [Enterococcus faecium ERV69]
gi|402965756|gb|EJX82446.1| transcription-repair coupling factor [Enterococcus faecium P1123]
gi|402968185|gb|EJX84679.1| transcription-repair coupling factor [Enterococcus faecium ERV99]
gi|402975697|gb|EJX91637.1| transcription-repair coupling factor [Enterococcus faecium ERV38]
gi|402978052|gb|EJX93817.1| transcription-repair coupling factor [Enterococcus faecium ERV168]
gi|402980102|gb|EJX95731.1| transcription-repair coupling factor [Enterococcus faecium ERV165]
gi|402980831|gb|EJX96411.1| transcription-repair coupling factor [Enterococcus faecium ERV26]
gi|402987655|gb|EJY02702.1| transcription-repair coupling factor [Enterococcus faecium ERV161]
gi|402988027|gb|EJY03056.1| transcription-repair coupling factor [Enterococcus faecium ERV102]
gi|402995981|gb|EJY10393.1| transcription-repair coupling factor [Enterococcus faecium ERV1]
gi|402997470|gb|EJY11791.1| transcription-repair coupling factor [Enterococcus faecium E422]
gi|403002272|gb|EJY16265.1| transcription-repair coupling factor [Enterococcus faecium E417]
gi|403003814|gb|EJY17669.1| transcription-repair coupling factor [Enterococcus faecium C1904]
gi|403003883|gb|EJY17732.1| transcription-repair coupling factor [Enterococcus faecium C621]
gi|403009237|gb|EJY22696.1| transcription-repair coupling factor [Enterococcus faecium C497]
gi|403011424|gb|EJY24734.1| transcription-repair coupling factor [Enterococcus faecium 515]
gi|403015005|gb|EJY27953.1| transcription-repair coupling factor [Enterococcus faecium 514]
gi|403019629|gb|EJY32216.1| transcription-repair coupling factor [Enterococcus faecium 513]
gi|403023139|gb|EJY35425.1| transcription-repair coupling factor [Enterococcus faecium 510]
gi|403025005|gb|EJY37117.1| transcription-repair coupling factor [Enterococcus faecium 511]
gi|403029334|gb|EJY41095.1| transcription-repair coupling factor [Enterococcus faecium 506]
gi|403031757|gb|EJY43347.1| transcription-repair coupling factor [Enterococcus faecium 509]
gi|403041231|gb|EJY52259.1| transcription-repair coupling factor [Enterococcus faecium 503]
gi|404455524|gb|EKA02371.1| transcription-repair coupling factor [Enterococcus sp. GMD4E]
gi|404458991|gb|EKA05364.1| transcription-repair coupling factor [Enterococcus sp. GMD3E]
gi|404464425|gb|EKA09966.1| transcription-repair coupling factor [Enterococcus sp. GMD2E]
gi|404470446|gb|EKA15079.1| transcription-repair coupling factor [Enterococcus sp. GMD1E]
gi|410733764|gb|EKQ75686.1| transcription-repair coupling factor [Enterococcus sp. GMD5E]
gi|425721961|gb|EKU84861.1| transcription-repair coupling factor [Enterococcus durans
FB129-CNAB-4]
gi|430438408|gb|ELA48842.1| transcription-repair coupling factor [Enterococcus faecium E0045]
gi|430444374|gb|ELA54229.1| transcription-repair coupling factor [Enterococcus faecium E0164]
gi|430479326|gb|ELA56582.1| transcription-repair coupling factor [Enterococcus faecium E0269]
gi|430479855|gb|ELA57065.1| transcription-repair coupling factor [Enterococcus faecium E0333]
gi|430537830|gb|ELA78145.1| transcription-repair coupling factor [Enterococcus faecium E1133]
gi|430550615|gb|ELA90398.1| transcription-repair coupling factor [Enterococcus faecium E1573]
gi|430554551|gb|ELA94153.1| transcription-repair coupling factor [Enterococcus faecium E1575]
gi|430555220|gb|ELA94764.1| transcription-repair coupling factor [Enterococcus faecium E1576]
gi|430559636|gb|ELA98984.1| transcription-repair coupling factor [Enterococcus faecium E1578]
gi|430569833|gb|ELB08813.1| transcription-repair coupling factor [Enterococcus faecium E1620]
gi|430571930|gb|ELB10802.1| transcription-repair coupling factor [Enterococcus faecium E1622]
gi|430576181|gb|ELB14850.1| transcription-repair coupling factor [Enterococcus faecium E1623]
gi|430579166|gb|ELB17702.1| transcription-repair coupling factor [Enterococcus faecium E1626]
gi|430589816|gb|ELB27916.1| transcription-repair coupling factor [Enterococcus faecium E1731]
gi|430606281|gb|ELB43639.1| transcription-repair coupling factor [Enterococcus faecium E2134]
gi|430610904|gb|ELB48034.1| transcription-repair coupling factor [Enterococcus faecium E2297]
gi|430615660|gb|ELB52604.1| transcription-repair coupling factor [Enterococcus faecium E2883]
gi|430627147|gb|ELB63664.1| transcription-repair coupling factor [Enterococcus faecium E4215]
gi|430628857|gb|ELB65287.1| transcription-repair coupling factor [Enterococcus faecium E1321]
gi|430632719|gb|ELB68920.1| transcription-repair coupling factor [Enterococcus faecium E1644]
gi|430633545|gb|ELB69700.1| transcription-repair coupling factor [Enterococcus faecium E2369]
gi|430639047|gb|ELB74938.1| transcription-repair coupling factor [Enterococcus faecium E2560]
gi|430639862|gb|ELB75717.1| transcription-repair coupling factor [Enterococcus faecium E4389]
gi|430645821|gb|ELB81323.1| transcription-repair coupling factor [Enterococcus faecium E6012]
gi|430650145|gb|ELB85499.1| transcription-repair coupling factor [Enterococcus faecium E6045]
gi|445189514|gb|AGE31156.1| Transcription-repair coupling factor [Enterococcus faecium NRRL
B-2354]
Length = 1173
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVADQRQKIEI 1043
>gi|430851335|ref|ZP_19469085.1| transcription-repair coupling factor [Enterococcus faecium E1185]
gi|430534297|gb|ELA74758.1| transcription-repair coupling factor [Enterococcus faecium E1185]
Length = 1173
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVADQRQKIEI 1043
>gi|420203410|ref|ZP_14708988.1| transcription-repair coupling factor, partial [Staphylococcus
epidermidis NIHLM018]
gi|394268022|gb|EJE12597.1| transcription-repair coupling factor, partial [Staphylococcus
epidermidis NIHLM018]
Length = 997
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/448 (45%), Positives = 304/448 (67%), Gaps = 5/448 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLF 466
+D+ IRG G + G+QQ G + +VG DL+
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLY 994
>gi|255325397|ref|ZP_05366501.1| transcription-repair coupling factor [Corynebacterium
tuberculostearicum SK141]
gi|255297483|gb|EET76796.1| transcription-repair coupling factor [Corynebacterium
tuberculostearicum SK141]
Length = 1212
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 223/554 (40%), Positives = 334/554 (60%), Gaps = 16/554 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFP 87
LSK+ + W+ K K + A++++ +L+ELY R Q P + P NP AE FP
Sbjct: 581 LSKMGGSD-WKNTKKKARAAVREIAGELVELYAKR--QAAPGHQFSPDNPWQAEMEDNFP 637
Query: 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147
+ T DQ A V+ D+ E PMDR++ GDVG+GKTEVA+RA F V G Q VL P
Sbjct: 638 FVETEDQMLAIDAVKHDM-ESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGMQVAVLVP 696
Query: 148 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS 207
T +LA+QHFD SER + +P +K+ +LSRF SK E ++ + G ++I+VGTH LL +
Sbjct: 697 TTLLAQQHFDTFSERMTGFP-VKIEVLSRFTSKKEAKDIFKGLADGSVDIVVGTHRLLQT 755
Query: 208 RVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI 267
V + NLGL+VVDEEQRFGV+ KE I + K SVDVLT+SATPIPRTL +++ G R+ S I
Sbjct: 756 GVHWKNLGLIVVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTI 815
Query: 268 STPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGV 327
TPP +R P+ T++ A+ ++V +AI+ EL R GQ F++ ++ +E+ L+ P
Sbjct: 816 LTPPEDRHPVLTYVGAYEDKQVAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPEA 875
Query: 328 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 387
+ +AHGQ LE+T++ F +L+CT IVE+GLDI NANT+IV++ GL+QL
Sbjct: 876 RVVVAHGQMNEEVLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL 935
Query: 388 YQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFG 447
+QLRGRVGR+ + +AY YP + L++ + +RLA + + +LG G +A KD+ +RG G
Sbjct: 936 HQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAG 995
Query: 448 TIFGEQQTGDVGNVGVDLFFEML------FESLSKVDEHCVISVPYKSVQIDININPRLP 501
+ G QQ+G + VG DL+ ++ F+SL++ + V K ++ID+ ++ +P
Sbjct: 996 NVLGAQQSGHIAGVGFDLYVRLVGEAVETFKSLARGEAPTVTDEGPKEIRIDLPVDAHIP 1055
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
YI+ +E+ + AA Q+ L E + ++G P + LL +R A
Sbjct: 1056 EGYIDSERLRLEVYRKL--AASQNDDDLKAVIEEMEDRFGPLPQEVLRLLSVARLRHQAR 1113
Query: 562 DIGITKIYASGKMV 575
GI+ I G V
Sbjct: 1114 RAGISDITVQGTRV 1127
>gi|334882367|emb|CCB83366.1| transcription-repair coupling factor [Lactobacillus pentosus MP-10]
Length = 1175
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 230/620 (37%), Positives = 370/620 (59%), Gaps = 25/620 (4%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E+K P+ ++KL T W + K K I+ + +L++LY R +K +P + +
Sbjct: 551 YVSSESKTPK-INKLG-GTEWTKAKRKVAAKIEDIADELVDLYAKREAEKGYAFPPDDSY 608
Query: 80 AE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E F FPY TPDQ ++ +++ D+ ER PMDRL+ GDVG+GKTEVALRA F + A
Sbjct: 609 QEDFDNDFPYPETPDQLRSINEIKHDM-ERPKPMDRLLVGDVGYGKTEVALRAAFKAIEA 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + RF YP I VG+LSRF++ E +E + +K+G L+I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETMLNRFEGYP-INVGMLSRFRTSKEMKETVQQLKNGELDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL V + +LGLL++DEEQRFGVK KE++ S K SVDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHRLLSKDVAFADLGLLIIDEEQRFGVKHKERLKSLKASVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R PI+T++ A + + I+ E+ R GQVFY+ R+ +++ +
Sbjct: 787 LGVRDLSVIETPPTNRYPIQTYVMAQNFGVIKEGIEREMQRNGQVFYLHNRVHDIDKVVA 846
Query: 319 FLQQAFPGVDIAIAH--GQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 376
++ P D A+AH GQ QLE + F +G +L+ T I+E+G+DI N NT+ V
Sbjct: 847 QIKDLVP--DAAVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVNTLFV 904
Query: 377 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 436
++ + GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+++ ELG GF++
Sbjct: 905 ENADRMGLSQLYQLRGRIGRSSRVAYAYFTYQQDKVLTEVGEKRLQAIKDFTELGSGFKI 964
Query: 437 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI 496
A +D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + ++ +++ I
Sbjct: 965 AMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLSEAVAK--KRGQVTKVKTDATVELGI 1022
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
LP+ YI +E+ + D + +Q + L ++G P + LL +
Sbjct: 1023 EAYLPTSYIEDERQKIEIYKRIRQLENNDQYLEVQ--DDLMDRFGDYPVEVAGLLAVGKL 1080
Query: 557 RRMAADIGITKIYASGKMVGMKTNM-------NKKVFKMMIDSMTSEVHRNSLTFEGDQI 609
+ +A D I KI + + + K +FK + + + ++ + D++
Sbjct: 1081 KMLADDALIEKIQREDSDLQLTLSQQGTAKLDTKDIFKALAKTKL----KATVGIDDDKM 1136
Query: 610 KAELLLELPREQLLNWIFQC 629
K +L+++ P+ Q W+ Q
Sbjct: 1137 KVKLVIQ-PKMQQDEWLEQL 1155
>gi|257888639|ref|ZP_05668292.1| transcription-repair coupling factor [Enterococcus faecium 1,141,733]
gi|257824693|gb|EEV51625.1| transcription-repair coupling factor [Enterococcus faecium 1,141,733]
Length = 1173
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVADQRQKIEI 1043
>gi|229083372|ref|ZP_04215723.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44]
gi|228699937|gb|EEL52571.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44]
Length = 1176
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/524 (39%), Positives = 330/524 (62%), Gaps = 10/524 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAF 98
W++ KTK + ++Q + DL++LY R K Y P EF + FPY+ T DQ ++
Sbjct: 573 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSI 632
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
++++D+ ER PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++
Sbjct: 633 EEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYET 691
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+ ERF YP I +GLLSRF+++ ++ E + +K G +++++GTH +L V Y +LGLL+
Sbjct: 692 IRERFQDYP-INIGLLSRFRTRKQQNETIKGLKDGTVDVVIGTHRILSKDVTYKDLGLLI 750
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++
Sbjct: 751 IDEEQRFGVTHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQ 810
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T++ ++ + AI+ EL RGGQ++++ R++ +E D + P + AHG+
Sbjct: 811 TYVVEYNPGLIREAIERELARGGQIYFLYNRVEDIERKADEISMLVPEARVTYAHGKMNE 870
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
+LE M F G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR++
Sbjct: 871 GELESVMLSFLDGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSN 930
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+ A+AY Y +LS+ A +RL A++E ELG GF++A +D+ IRG G + G +Q G +
Sbjct: 931 RVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFI 990
Query: 459 GNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVN 516
+VG DL+ +ML +++ K E ++ V+ID+ ++ LP YI+ + + M
Sbjct: 991 DSVGFDLYSQMLKDAIEQRKGTEGIENTI---DVEIDLEVDAYLPDAYISDSKQKIMMYK 1047
Query: 517 EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 560
+ + I + + E + ++G P + LL+ ++ +A
Sbjct: 1048 QFRGVS--TIEDIEELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
>gi|430835076|ref|ZP_19453075.1| transcription-repair coupling factor [Enterococcus faecium E0679]
gi|430484744|gb|ELA61706.1| transcription-repair coupling factor [Enterococcus faecium E0679]
Length = 1173
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWAKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVADQRQKIEI 1043
>gi|52841189|ref|YP_094988.1| transcription repair coupling factor [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|378776907|ref|YP_005185344.1| transcription repair coupling factor [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52628300|gb|AAU27041.1| transcription repair coupling factor [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364507721|gb|AEW51245.1| transcription repair coupling factor [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 1153
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 230/573 (40%), Positives = 340/573 (59%), Gaps = 9/573 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA-IAEFAAQFPYEPTPDQKKAF 98
W++ K K I + ++L++LY R Q Y N + +FA+ FP+ TPDQ +A
Sbjct: 553 WQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFNQSEYIKFASGFPFTETPDQLQAI 612
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
+ +D+ + PMDRLICGDVGFGKTEVA+RA F V GKQ +LAPT +LA QHF+
Sbjct: 613 EQIIKDM-QSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAPTTLLAGQHFES 671
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
+RF+ +P + + LLSRF+S E E L ++ G ++I++GTH L + + + NLGLL+
Sbjct: 672 FRDRFADFP-VNIELLSRFRSNKESEAVLAALQSGKVDIVIGTHKLFQNNISFKNLGLLI 730
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEE RFGVKQKE I S + VD+L+++ATPIPRTL +A+ G RD SLI+TPP +RL IK
Sbjct: 731 IDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIRDISLIATPPAKRLAIK 790
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + + AI E+ RGGQVFY+ ++ +E L+ P I AHGQ
Sbjct: 791 TFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIERVCQDLEALVPEAKIQSAHGQMRE 850
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
RQLE M F +L+CT I+E+G+DI ANTII+ +FGLAQL+QLRGRVGR+
Sbjct: 851 RQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLHQLRGRVGRSH 910
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+A+AYL P++ LL+ A++RL A+ +LG GF LA D+ IRG G + GE+Q+G++
Sbjct: 911 HQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGELLGEEQSGNM 970
Query: 459 GNVGVDLFFEMLFESLS--KVDEHCVISVP-YKSVQIDININPRLPSEYINHLENPMEMV 515
+G +LF EML +++ K + +S P ++ +ID+ I+ +P +YI + N + M
Sbjct: 971 HAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEIDLRISAIIPEDYIGDIHNRLIMY 1030
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 575
A + L + L ++G P ++ L ++ A +GI KI AS +
Sbjct: 1031 KRIANA--KTTQQLRELQIELIDRFGLLPQPVKHLFLITELKLKAEQLGIQKISASAQQG 1088
Query: 576 GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 608
+ + + + S+ +VH EG Q
Sbjct: 1089 KLDFSEKPSIDPGTLISLI-QVHAKRYQMEGPQ 1120
>gi|294618628|ref|ZP_06698167.1| transcription-repair coupling factor [Enterococcus faecium E1679]
gi|431668796|ref|ZP_19524158.1| transcription-repair coupling factor [Enterococcus faecium E1904]
gi|291595147|gb|EFF26485.1| transcription-repair coupling factor [Enterococcus faecium E1679]
gi|430599962|gb|ELB37644.1| transcription-repair coupling factor [Enterococcus faecium E1904]
Length = 1173
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVADQRQKIEI 1043
>gi|431758725|ref|ZP_19547350.1| transcription-repair coupling factor [Enterococcus faecium E3083]
gi|430617093|gb|ELB53979.1| transcription-repair coupling factor [Enterococcus faecium E3083]
Length = 1173
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVADQRQKIEI 1043
>gi|329767249|ref|ZP_08258776.1| transcription-repair coupling factor [Gemella haemolysans M341]
gi|328836916|gb|EGF86563.1| transcription-repair coupling factor [Gemella haemolysans M341]
Length = 1183
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/463 (44%), Positives = 304/463 (65%), Gaps = 4/463 (0%)
Query: 9 CTCGSIMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 68
++ + + + R L+KL T W++ K++ + I+ + DL++LY+ R
Sbjct: 526 VDINNMNYIQKYTASTDNRKPALNKLG-TKNWQKTKSRVRKEIEDISEDLIKLYIKRELS 584
Query: 69 KRPPYPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 127
Y + ++ +EF A F Y PT DQ KA +++RD+ E++ PMDRL+CGDVGFGKTEV
Sbjct: 585 SGYAYSLDGSMQSEFEADFAYTPTDDQVKATEEIKRDM-EKQRPMDRLLCGDVGFGKTEV 643
Query: 128 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 187
A+R F V+ KQ VL PT +LA+QH+D RF+ +P + + ++SRF+S + E
Sbjct: 644 AMRVAFKAVTDNKQVAVLVPTTLLAEQHYDNFVSRFANFP-VNIEVVSRFKSAKDITEIC 702
Query: 188 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 247
++ G ++IIVGTH LL + Y +LGLL++DEEQRFGVK KEKI K +VDVLTLSA
Sbjct: 703 KKLEEGKIDIIVGTHKLLNDKFKYKDLGLLIIDEEQRFGVKHKEKIKHLKNTVDVLTLSA 762
Query: 248 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 307
TPIPRTL+++L G RD S+I TPP ER PI+T ++A +K + A+ E++RGGQVFYV
Sbjct: 763 TPIPRTLHMSLIGIRDLSVIETPPRERQPIQTFVTAQNKMVIKEAVMNEINRGGQVFYVY 822
Query: 308 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 367
R++ ++E L++ P ++IA AHG+ R+LE M +LI T I+E+G+D
Sbjct: 823 NRVETIDEKYLELKRLLPDINIAYAHGRMSQRELENIMSDVIDRKYDMLISTTIIETGID 882
Query: 368 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 427
I N NT+IV+D +FGL+QLYQLRGRVGR+ +EA+AYL Y L++ + +RL+A++
Sbjct: 883 ISNVNTLIVEDADRFGLSQLYQLRGRVGRSSREAYAYLMYEPFKSLTENSEKRLSAIKNF 942
Query: 428 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML 470
LG GF++A +D+ IRG G + G +Q G + +VG L+ +ML
Sbjct: 943 TSLGSGFKIAMQDLSIRGAGDVLGGRQHGFIDSVGYTLYSQML 985
>gi|293571071|ref|ZP_06682112.1| transcription-repair coupling factor [Enterococcus faecium E980]
gi|430842702|ref|ZP_19460614.1| transcription-repair coupling factor [Enterococcus faecium E1007]
gi|431084336|ref|ZP_19496006.1| transcription-repair coupling factor [Enterococcus faecium E1604]
gi|431115418|ref|ZP_19497835.1| transcription-repair coupling factor [Enterococcus faecium E1613]
gi|431600920|ref|ZP_19522405.1| transcription-repair coupling factor [Enterococcus faecium E1861]
gi|431742255|ref|ZP_19531150.1| transcription-repair coupling factor [Enterococcus faecium E2039]
gi|291608854|gb|EFF38135.1| transcription-repair coupling factor [Enterococcus faecium E980]
gi|430492926|gb|ELA69267.1| transcription-repair coupling factor [Enterococcus faecium E1007]
gi|430564880|gb|ELB04057.1| transcription-repair coupling factor [Enterococcus faecium E1604]
gi|430568577|gb|ELB07617.1| transcription-repair coupling factor [Enterococcus faecium E1613]
gi|430590077|gb|ELB28162.1| transcription-repair coupling factor [Enterococcus faecium E1861]
gi|430600411|gb|ELB38060.1| transcription-repair coupling factor [Enterococcus faecium E2039]
Length = 1173
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 322/493 (65%), Gaps = 6/493 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYINHLENPMEM 514
Y+ +E+
Sbjct: 1031 ETYVADQRQKIEI 1043
>gi|425055288|ref|ZP_18458769.1| transcription-repair coupling factor [Enterococcus faecium 505]
gi|403034230|gb|EJY45694.1| transcription-repair coupling factor [Enterococcus faecium 505]
Length = 1173
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/484 (41%), Positives = 319/484 (65%), Gaps = 6/484 (1%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K PR ++KL + W + K K I+ + DL++LY R +K + P + E
Sbjct: 556 SEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQKE 613
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F + KQ
Sbjct: 614 FENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKESKQ 672
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+VGT
Sbjct: 673 VAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVVGT 731
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++ G
Sbjct: 732 HRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGV 791
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++ +Q
Sbjct: 792 RDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEEIQ 851
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 852 ELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENADY 911
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +D+
Sbjct: 912 MGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMRDL 971
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++ LP
Sbjct: 972 SIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAYLP 1030
Query: 502 SEYI 505
Y+
Sbjct: 1031 ETYV 1034
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,643,996,853
Number of Sequences: 23463169
Number of extensions: 401138462
Number of successful extensions: 1095203
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 11273
Number of HSP's successfully gapped in prelim test: 16089
Number of HSP's that attempted gapping in prelim test: 1033136
Number of HSP's gapped (non-prelim): 34111
length of query: 643
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 494
effective length of database: 8,863,183,186
effective search space: 4378412493884
effective search space used: 4378412493884
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)