BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006476
(643 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55750|MFD_SYNY3 Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=mfd PE=3 SV=1
Length = 1199
Score = 523 bits (1346), Expect = e-147, Method: Compositional matrix adjust.
Identities = 277/582 (47%), Positives = 384/582 (65%), Gaps = 11/582 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 78
FR T RP L K+ WE K K + A++K+ VDL+ LY R KQ YP + P
Sbjct: 577 FRHTGT-RPPELHKMGGKV-WEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYAYPPDSPW 634
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
E FPY+PTPDQ KA DV+RDL E + PMDRL+CGDVGFGKTEVA+RAIF V++
Sbjct: 635 QQELEDSFPYQPTPDQLKAVQDVKRDL-EGDRPMDRLVCGDVGFGKTEVAVRAIFKAVTS 693
Query: 139 G-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 197
G KQ +LAPT VL +QH+ + ERF+ YP I +GLL+RF++ +EK+E L +K G L+I
Sbjct: 694 GNKQVALLAPTTVLTQQHYHTLKERFAPYP-ITIGLLNRFRTASEKKEILAKLKSGELDI 752
Query: 198 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 257
+VGT +LG+ V + +LGLLV+DEEQRFGV QKEKI + K VDVLTL+ATPIPRTLY++
Sbjct: 753 VVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIPRTLYMS 812
Query: 258 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
L+G R+ SLI+TPPP R PIKTHLS ++ E + +AI+ ELDRGGQVFYV+PRI+G+EE
Sbjct: 813 LSGIREMSLITTPPPSRRPIKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIEGIEELG 872
Query: 318 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 377
L+Q P IAI HGQ +LE TM F G IL+CT I+E+GLDI NTIIV+
Sbjct: 873 GQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRVNTIIVE 932
Query: 378 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 437
D Q+FGLAQLYQLRGRVGR+ +AHA+L YP++ L+++A RL AL+E +LG G+QLA
Sbjct: 933 DAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLGSGYQLA 992
Query: 438 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 497
+DM IRG G + G +Q+G + +G + + EML +++ ++ + V + QID+ +
Sbjct: 993 TRDMEIRGVGNLLGAEQSGQMEAIGYEFYMEMLQDAIKEIQGQEIPKV--EDTQIDLPLT 1050
Query: 498 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
+PS+YI LE M D L + +YG P +E L K + ++
Sbjct: 1051 AFIPSDYIPDLEEKMAAYRRITSIESTD--ELPKIALDWGDRYGMLPSPVEELFKVVKLK 1108
Query: 558 RMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVH 598
+A +G ++I GK + ++T M + +K++ +++ + +
Sbjct: 1109 HLAKSLGFSRIKVEGKQNLVLETPMEEPAWKLLAENLPNHLQ 1150
>sp|Q4L3G0|MFD_STAHJ Transcription-repair-coupling factor OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=mfd PE=3 SV=1
Length = 1169
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/557 (40%), Positives = 357/557 (64%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L+ LY R Y ++ A
Sbjct: 551 YVASEDKSPK-LNKLG-GSEWKKTKAKVQQSVEDIADELIALYKEREMSVGYQYGEDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ERE PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEMDFPYELTPDQAKSIDEIKGDM-ERERPMDRLLCGDVGYGKTEVAVRAAFKAVME 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF+S E +E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLIERMQDFP-VQIELISRFRSTKEVKETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTMKTNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ R++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRDGQVFYLYNRVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F G IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQMLMPDANIAVAHGQMTERDLEETMLSFINGEFDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY + +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHSANKVLTETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ V++++N++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEEEPDAPEVEMELNLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K ++ L + L ++ P +E LL+ + ++
Sbjct: 1027 YLPAEYIQNEQAKIEIYKKLRKVETEE--QLFDIKDELIDRFNDYPVEVERLLEMVEIKI 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+T I GK +
Sbjct: 1085 HALHAGVTLIKDKGKQI 1101
>sp|Q5HRQ2|MFD_STAEQ Transcription-repair-coupling factor OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=mfd PE=3 SV=1
Length = 1169
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 355/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>sp|P37474|MFD_BACSU Transcription-repair-coupling factor OS=Bacillus subtilis (strain
168) GN=mfd PE=3 SV=1
Length = 1177
Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/541 (41%), Positives = 342/541 (63%), Gaps = 12/541 (2%)
Query: 23 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 81
+E K P+ L KL + W+R K K + ++Q + DL++LY R K + P + E
Sbjct: 558 SEGKEPK-LYKLG-GSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPDHEMQRE 615
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA F + GKQ
Sbjct: 616 FESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQ 674
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K+G ++I++GT
Sbjct: 675 VALLVPTTILAQQHYETIKERFQDYP-INIGLLSRFRTRKEANETIKGLKNGTVDIVIGT 733
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++ G
Sbjct: 734 HRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGV 793
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++ +E D +
Sbjct: 794 RDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEIS 853
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D +
Sbjct: 854 MLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADK 913
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +D+
Sbjct: 914 MGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDL 973
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G QQ G + +VG DL+ +ML E++ + + +++ +ID+ ++ +P
Sbjct: 974 TIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFET-EIDVELDAYIP 1032
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK----KLYVR 557
YI + ++M A I + + + ++G P +E L K+Y R
Sbjct: 1033 ETYIQDGKQKIDMYKRFRSVA--TIEEKNELQDEMIDRFGNYPKEVEYLFTVAEMKVYAR 1090
Query: 558 R 558
+
Sbjct: 1091 Q 1091
>sp|Q8CMT1|MFD_STAES Transcription-repair-coupling factor OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=mfd PE=3 SV=1
Length = 1169
Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust.
Identities = 224/557 (40%), Positives = 354/557 (63%), Gaps = 7/557 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K PR L+KL T W++ K K + +++ + +L++LY R Y ++ A
Sbjct: 551 YVASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAE 608
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 609 QSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMD 667
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E + +K G+++I+
Sbjct: 668 GKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETKEGLKSGYVDIV 726
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 727 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSM 786
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 787 LGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKRE 846
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I+++
Sbjct: 847 QLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEE 906
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL ++E ELG GF++A
Sbjct: 907 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQTIKEFTELGSGFKIAM 966
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S ++++++++
Sbjct: 967 RDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELHLDA 1026
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + +E+ + K ++ L + L ++ P +E LL + ++
Sbjct: 1027 YLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEVERLLDIVEIKV 1084
Query: 559 MAADIGITKIYASGKMV 575
A G+ I GK +
Sbjct: 1085 HALHAGVELIKDKGKSI 1101
>sp|Q49V12|MFD_STAS1 Transcription-repair-coupling factor OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=mfd PE=3 SV=1
Length = 1170
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 234/559 (41%), Positives = 358/559 (64%), Gaps = 11/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 79
+ +E K P+ L+KL T W++ K K + +++ M +L+ELY + ++ Y P
Sbjct: 552 YVASEDKSPK-LNKLG-GTEWKKTKAKVQQSVEDMADELIELY--KAREMSVGYKFGPDT 607
Query: 80 AE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136
AE F FPYE TPDQ K+ ++++D+ E E PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 AEQNDFEIDFPYELTPDQSKSIEEIKQDM-EIERPMDRLLCGDVGYGKTEVAVRAAFKAV 666
Query: 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 196
GKQ L PT +LA+QH++ + ER +P I+V L+SRF++ E +E + +K G ++
Sbjct: 667 MEGKQVAFLVPTTILAQQHYETLIERMQDFP-IEVQLISRFRTTKEVKETKEGLKSGFVD 725
Query: 197 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 256
I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I S K +VDVLTL+ATPIPRTL++
Sbjct: 726 IVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKSLKNNVDVLTLTATPIPRTLHM 785
Query: 257 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 316
++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E
Sbjct: 786 SMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEK 845
Query: 317 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 376
+ LQ P +I +AHGQ R LEETM F I++ T I+E+G+D+ NANT+I+
Sbjct: 846 REQLQMLMPDANIGVAHGQMNERDLEETMLSFINHEYDIIVTTTIIETGVDVPNANTLII 905
Query: 377 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 436
+D +FGL+QLYQLRGRVGR+ + +AY +P +LS+ A +RL A++E ELG GF++
Sbjct: 906 EDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLSETAEDRLQAIKEFTELGSGFKI 965
Query: 437 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI 496
A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ ++I++NI
Sbjct: 966 AMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKAEKQDAPEIEIELNI 1025
Query: 497 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 556
+ LP+EYI + ++ +E+ + K + LM + L ++ P +E LL+ + +
Sbjct: 1026 DAYLPAEYIPNEQSKIEIYKKLRKIESE--TQLMDVKDELIDRFNDYPIEVERLLEMMEI 1083
Query: 557 RRMAADIGITKIYASGKMV 575
+ A G+T I GK V
Sbjct: 1084 KVHALHAGVTLIKDVGKQV 1102
>sp|Q2YVY2|MFD_STAAB Transcription-repair-coupling factor OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=mfd PE=3 SV=1
Length = 1168
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>sp|Q7A7B2|MFD_STAAN Transcription-repair-coupling factor OS=Staphylococcus aureus (strain
N315) GN=mfd PE=1 SV=1
Length = 1168
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>sp|Q99WA0|MFD_STAAM Transcription-repair-coupling factor OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=mfd PE=1 SV=1
Length = 1168
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>sp|Q8NXZ6|MFD_STAAW Transcription-repair-coupling factor OS=Staphylococcus aureus (strain
MW2) GN=mfd PE=3 SV=1
Length = 1168
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>sp|Q6GBY5|MFD_STAAS Transcription-repair-coupling factor OS=Staphylococcus aureus (strain
MSSA476) GN=mfd PE=3 SV=1
Length = 1168
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>sp|Q2G0R8|MFD_STAA8 Transcription-repair-coupling factor OS=Staphylococcus aureus (strain
NCTC 8325) GN=mfd PE=3 SV=1
Length = 1168
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>sp|Q2FJD8|MFD_STAA3 Transcription-repair-coupling factor OS=Staphylococcus aureus (strain
USA300) GN=mfd PE=3 SV=1
Length = 1168
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>sp|Q6GJG8|MFD_STAAR Transcription-repair-coupling factor OS=Staphylococcus aureus (strain
MRSA252) GN=mfd PE=3 SV=1
Length = 1168
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>sp|Q5HIH2|MFD_STAAC Transcription-repair-coupling factor OS=Staphylococcus aureus (strain
COL) GN=mfd PE=3 SV=1
Length = 1168
Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/559 (39%), Positives = 354/559 (63%), Gaps = 7/559 (1%)
Query: 20 FRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 78
+ +E K P+ L+KL + W++ K K + +++ + +L++LY R + Y ++ A
Sbjct: 550 YVASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAE 607
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRAAFKAVME 666
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K G ++I+
Sbjct: 667 GKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLKTGFVDIV 725
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRTL++++
Sbjct: 726 VGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSM 785
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 318
G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++ + E +
Sbjct: 786 LGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKRE 845
Query: 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378
LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NANT+I++D
Sbjct: 846 QLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIED 905
Query: 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 438
+FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG GF++A
Sbjct: 906 ADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAM 965
Query: 439 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 498
+D+ IRG G + G+QQ G + VG DL+ +ML E++++ V++D+N++
Sbjct: 966 RDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDA 1025
Query: 499 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 558
LP+EYI + + +E+ + K D ++ + L ++ P + LL + ++
Sbjct: 1026 YLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLLDIVEIKV 1083
Query: 559 MAADIGITKIYASGKMVGM 577
A GIT I GK++ +
Sbjct: 1084 HALHSGITLIKDKGKIIDI 1102
>sp|O51568|MFD_BORBU Transcription-repair-coupling factor OS=Borrelia burgdorferi (strain
ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=mfd PE=3
SV=1
Length = 1125
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 217/539 (40%), Positives = 331/539 (61%), Gaps = 8/539 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE-FAAQFPYE 89
L K+S T W + K K I+++ L+ELY R K YP++ + F ++FPY+
Sbjct: 524 LDKISSKT-WIKNKANAKKRIEEIADKLIELYSKRESIKGIKYPEDNELQLLFESEFPYD 582
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ +A +++ D+ + MDRL+CGDVGFGKTEVA+RA F V KQ +VL+PT
Sbjct: 583 ETPDQIRAIKEIKEDMMSFKV-MDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTT 641
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QHF+ +RF +P IK+ +LSRF + L +K G ++II+GTH +L +
Sbjct: 642 ILAEQHFNTFKKRFKNFP-IKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKF 700
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
NLGL+++DEEQRFGVK+KEK+ +ISVD L LSATPIPR+L+++L RD S++
Sbjct: 701 TCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKI 760
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP R+ I+ +L +FS+ + AI+ EL R GQVF V I+ L +++ P I
Sbjct: 761 PPQNRVKIEAYLESFSELLIKHAIESELSRDGQVFLVNHNIEELYYLKTLIERLTPYARI 820
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
AI HG+ ++E M F + A +IL+ T I+E+G+DI NANTII+ + +FGLAQLYQ
Sbjct: 821 AIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLYQ 880
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
L+GRVGR ++A+AY Y D L+++++ERL A+ E ELG GF++A KDM IRG G +
Sbjct: 881 LKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGNL 940
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509
G +Q G++ ++G+D + ML +++ K + IS + V I IN + +P Y + +
Sbjct: 941 LGREQHGEIESIGLDYYLTMLNKAIEK--KMGKISSDEEEVDIKINYSGFIPENYAKNEQ 998
Query: 510 NPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568
+ + + + K ++ + L +G P + LL ++ +A D+ ITK+
Sbjct: 999 DKILIYKKIFKIQTEE--ESKKIRSELHNDFGPIPEEINSLLMLAELKILAKDLNITKL 1055
>sp|O52236|MFD_MYXXA Transcription-repair-coupling factor OS=Myxococcus xanthus GN=mfd
PE=3 SV=1
Length = 1201
Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust.
Identities = 224/579 (38%), Positives = 340/579 (58%), Gaps = 27/579 (4%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK-NPAIAEFAAQFPYE 89
L KL TT+WE+ K + K + KM +L+++ R + + A+F A F +E
Sbjct: 597 LDKLG-TTSWEKTKKRVKEQLLKMAAELLQIAAARKAHPGHAFSAPDRYFAQFEADFEFE 655
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
TPDQ KA DV D+ + E PMDRL+CGDVG+GKTEVA+RA F KQ VL PT
Sbjct: 656 ETPDQAKAIEDVLADMQKPE-PMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVLVPTT 714
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
VLA+QHF +RF+ YP + V ++S + E E L K G ++I++GTH LLG V
Sbjct: 715 VLAQQHFLSFKKRFADYP-VTVEVISGLKKAPEVREILKRAKEGKVDILIGTHKLLGGEV 773
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+ LGL++VDEEQRFGVKQKE + ++ +DVLTL+ATPIPRTL+++++G RD S+I+T
Sbjct: 774 AFKELGLMIVDEEQRFGVKQKESLKKWRSQIDVLTLTATPIPRTLHMSMSGVRDMSIIAT 833
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP +R I+T + + V AI+ E+ RGGQVF+V R++ L L+ P V I
Sbjct: 834 PPQDRRAIRTFVMKYEDTVVKEAIEREVARGGQVFFVHNRVESLPSIETQLRALVPQVSI 893
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+AHGQ QLE+ M F + ++L+CT+I+ESG+DI +ANT+IV QFGLAQLYQ
Sbjct: 894 GVAHGQMGEGQLEKVMLAFTEKKYQVLLCTSIIESGIDISSANTMIVNRADQFGLAQLYQ 953
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR+ + A+AYL P + ++ A RL L+ ELG GF +A D+ IRG G +
Sbjct: 954 LRGRVGRSKERAYAYLLVPSRRAVTKDAQRRLEVLQNFTELGAGFSIASHDLEIRGAGNL 1013
Query: 450 FGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ-PRL-PSEYINH 507
G++Q+G + +G D++ ++L E+++++ P ++ D+ + P L P +Y++
Sbjct: 1014 LGDKQSGAIAEIGFDMYAQLLEEAVAEMQGQP----PKVQIEPDVTLPMPALIPDDYVSD 1069
Query: 508 LENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEP----YSMEILLKKLYVRRM---A 560
+ + +A+ D + L +YG+ P + E+ L K+ +R +
Sbjct: 1070 VHQRLVFYKRFSQASHPD--EVTDLRAELVDRYGEAPDEVDHLSELTLLKIDMRDLRLRG 1127
Query: 561 ADIGITKIYAS--------GKMVGMKTNMNKKVFKMMID 591
++G T++ + G V +K V+++ D
Sbjct: 1128 LEVGTTRLVVTLGADALLDGPKVAGLVQRSKGVYRLTPD 1166
>sp|Q89AK2|MFD_BUCBP Transcription-repair-coupling factor OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=mfd PE=3 SV=1
Length = 697
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 203/524 (38%), Positives = 309/524 (58%), Gaps = 16/524 (3%)
Query: 58 LMELYLHRLKQKRPPYPKNPAIAE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLI 116
L+ +Y HR+ QK + K+ + F +FP+ TPDQ A V D+ + TPMDRL+
Sbjct: 121 LLNIYSHRISQKGFSFKKHHTKYKIFCERFPFTLTPDQDSAINSVLSDMY-KSTPMDRLV 179
Query: 117 CGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR 176
CGDVGFGKTEVA+RA F V KQ +L PT +LA+QHF+ + RF KY K+ +LSR
Sbjct: 180 CGDVGFGKTEVAMRATFLAVCNQKQVAILVPTTLLAQQHFNNFTLRF-KYWSTKIEILSR 238
Query: 177 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 236
FQS+ + E ++ + G++++++GTH +L + + NLGLL+VDEE RFGV KE+I
Sbjct: 239 FQSETKCNEIINNVNIGNVHVLIGTHKILLKNLKWKNLGLLIVDEEHRFGVHHKEQIKLI 298
Query: 237 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYE 296
++DVLTL+ATPIPRTL +A G RD S+I+TPP +RL +KT + FS + AI E
Sbjct: 299 SNNIDVLTLTATPIPRTLNMAFVGIRDLSIIATPPKQRLIVKTFVREFSYTVIRKAILRE 358
Query: 297 LDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKIL 356
+ RGGQV+Y+ + +E L++ P +I I HGQ S LE M F +L
Sbjct: 359 ILRGGQVYYIYNNVNKIERKKIELKKLVPEANIRIGHGQLRSTDLESIMNDFYHKRFNVL 418
Query: 357 ICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQ 416
+C+ I+E+G+DI N NTII+++ FGLAQL+QLRGRVGR+ +A+A+L P +
Sbjct: 419 VCSTIIETGIDIPNVNTIIIENANNFGLAQLHQLRGRVGRSQHQAYAWLLVPSLKDIKSD 478
Query: 417 ALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK 476
A +R+ A+ G F+LA +D+ IRG G I G Q+G + +G L+ ++L ++
Sbjct: 479 AKKRIDAITSIESFGSCFELANRDLEIRGIGEILGNNQSGHITKIGFSLYMKLLMNAVRN 538
Query: 477 VD-------EHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCL 529
+ + + P +I++N++ LP YI + + + N+ A + L
Sbjct: 539 IKNGYYKPLNDIINTYP----KIELNVSNLLPDSYIKKVNHRLFFYNKI--ATSNNFLDL 592
Query: 530 MQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
+ +L + +G P S + L+K +R ++ IG+ KI + K
Sbjct: 593 EKIRLTLCKNFGNLPNSGDYLIKIAKIRLISKKIGVKKIKSDVK 636
>sp|P64326|MFD_MYCTU Transcription-repair-coupling factor OS=Mycobacterium tuberculosis
GN=mfd PE=1 SV=1
Length = 1234
Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust.
Identities = 219/554 (39%), Positives = 324/554 (58%), Gaps = 21/554 (3%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFP 87
LS+L + W KTK + A++++ +L+ LY R Q P + P P AE F
Sbjct: 590 LSRLGGSD-WANTKTKARRAVREIAGELVSLYAKR--QASPGHAFSPDTPWQAELEDAFG 646
Query: 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147
+ T DQ A +V+ D+ E+ PMDR+ICGDVG+GKTE+A+RA F V GKQ VL P
Sbjct: 647 FTETVDQLTAIEEVKADM-EKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 705
Query: 148 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS 207
T +LA QH ER S +P + + LSRF AE +D + G ++I++GTH LL +
Sbjct: 706 TTLLADQHLQTFGERMSGFP-VTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQT 764
Query: 208 RVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI 267
V + +LGL+VVDEEQRFGV+ KE I S + VDVLT+SATPIPRTL ++L G R+ S I
Sbjct: 765 GVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTI 824
Query: 268 STPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGV 327
TPP ER P+ T++ +++ +A++ EL R GQ FYV R+ ++ +++ P
Sbjct: 825 LTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEA 884
Query: 328 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 387
+ +AHGQ LE T+++F IL+CT IVE+GLDI NANT+IV+ FGL+QL
Sbjct: 885 RVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQL 944
Query: 388 YQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFG 447
+QLRGRVGR+ + +AY YP + L++ A +RLA + + ELG G +A KD+ IRG G
Sbjct: 945 HQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAG 1004
Query: 448 TIFGEQQTGDVGNVGVDLFFEMLFESL--------SKVDEHCVISVPY-KSVQIDININP 498
+ G +Q+G V VG DL+ ++ E+L + D V + K V+ID+ ++
Sbjct: 1005 NVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDA 1064
Query: 499 RLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
LP +YI +E A ++++++ ++ + L +YG P L +R
Sbjct: 1065 HLPPDYIASDRLRLEGYRRLAAASSDREVAAVV---DELTDRYGALPEPARRLAAVARLR 1121
Query: 558 RMAADIGITKIYAS 571
+ GIT + A+
Sbjct: 1122 LLCRGSGITDVTAA 1135
>sp|P64327|MFD_MYCBO Transcription-repair-coupling factor OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=mfd PE=3 SV=1
Length = 1234
Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust.
Identities = 219/554 (39%), Positives = 324/554 (58%), Gaps = 21/554 (3%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFP 87
LS+L + W KTK + A++++ +L+ LY R Q P + P P AE F
Sbjct: 590 LSRLGGSD-WANTKTKARRAVREIAGELVSLYAKR--QASPGHAFSPDTPWQAELEDAFG 646
Query: 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147
+ T DQ A +V+ D+ E+ PMDR+ICGDVG+GKTE+A+RA F V GKQ VL P
Sbjct: 647 FTETVDQLTAIEEVKADM-EKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP 705
Query: 148 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS 207
T +LA QH ER S +P + + LSRF AE +D + G ++I++GTH LL +
Sbjct: 706 TTLLADQHLQTFGERMSGFP-VTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQT 764
Query: 208 RVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI 267
V + +LGL+VVDEEQRFGV+ KE I S + VDVLT+SATPIPRTL ++L G R+ S I
Sbjct: 765 GVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTI 824
Query: 268 STPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGV 327
TPP ER P+ T++ +++ +A++ EL R GQ FYV R+ ++ +++ P
Sbjct: 825 LTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEA 884
Query: 328 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 387
+ +AHGQ LE T+++F IL+CT IVE+GLDI NANT+IV+ FGL+QL
Sbjct: 885 RVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQL 944
Query: 388 YQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFG 447
+QLRGRVGR+ + +AY YP + L++ A +RLA + + ELG G +A KD+ IRG G
Sbjct: 945 HQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAG 1004
Query: 448 TIFGEQQTGDVGNVGVDLFFEMLFESL--------SKVDEHCVISVPY-KSVQIDININP 498
+ G +Q+G V VG DL+ ++ E+L + D V + K V+ID+ ++
Sbjct: 1005 NVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDA 1064
Query: 499 RLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 557
LP +YI +E A ++++++ ++ + L +YG P L +R
Sbjct: 1065 HLPPDYIASDRLRLEGYRRLAAASSDREVAAVV---DELTDRYGALPEPARRLAAVARLR 1121
Query: 558 RMAADIGITKIYAS 571
+ GIT + A+
Sbjct: 1122 LLCRGSGITDVTAA 1135
>sp|P30958|MFD_ECOLI Transcription-repair-coupling factor OS=Escherichia coli (strain K12)
GN=mfd PE=1 SV=2
Length = 1148
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/539 (37%), Positives = 319/539 (59%), Gaps = 8/539 (1%)
Query: 39 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE-FAAQFPYEPTPDQKKA 97
AW R + K ++ + +L+++Y R ++ + + + F FP+E TPDQ +A
Sbjct: 549 AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQA 608
Query: 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157
V D+ + MDRL+CGDVGFGKTEVA+RA F V KQ VL PT +LA+QH+D
Sbjct: 609 INAVLSDMCQ-PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667
Query: 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217
+RF+ +P +++ ++SRF+S E+ + L + G ++I++GTH LL S V + +LGLL
Sbjct: 668 NFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726
Query: 218 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 277
+VDEE RFGV+ KE+I + + +VD+LTL+ATPIPRTL +A++G RD S+I+TPP RL +
Sbjct: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786
Query: 278 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 337
KT + + V AI E+ RGGQV+Y+ ++ +++ + L + P IAI HGQ
Sbjct: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846
Query: 338 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 397
R+LE M F +L+CT I+E+G+DI ANTII++ FGLAQL+QLRGRVGR+
Sbjct: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906
Query: 398 DKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 457
+A+A+L P ++ A +RL A+ +LG GF LA D+ IRG G + GE+Q+G
Sbjct: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966
Query: 458 VGNVGVDLFFEML---FESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEM 514
+ +G L+ E+L ++L E + + + ++++ + LP ++I + +
Sbjct: 967 METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026
Query: 515 VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 573
A ++ L + L ++G P LL +R+ A +GI K+ + K
Sbjct: 1027 YKRIASAKTEN--ELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083
>sp|P45128|MFD_HAEIN Transcription-repair-coupling factor OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=mfd PE=3
SV=1
Length = 1146
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 208/547 (38%), Positives = 321/547 (58%), Gaps = 15/547 (2%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYE 89
L KL + AW + + K I+ + +L+++Y R +K + + +F+A FP+E
Sbjct: 544 LHKLGNE-AWAKSRQKAAEKIRDVAAELLDVYAQREAKKGFAFKYDREEFQQFSATFPFE 602
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149
T DQ+ A V D+ + + MDRL+CGDVGFGKTEVA+RA F V KQ VL PT
Sbjct: 603 ETYDQEMAINAVISDMCQPKA-MDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTT 661
Query: 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209
+LA+QH++ +RF+ P + V +LSRF++ E+++ L+ + G ++I++GTH L+ S V
Sbjct: 662 LLAQQHYENFKDRFANLP-VNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDV 720
Query: 210 VYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269
+N+LGLL++DEE RFGV QKEKI + ++D+LTL+ATPIPRTL +A+ G RD S+IST
Sbjct: 721 KFNDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIIST 780
Query: 270 PPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 329
PP RL IKT + V AI E+ RGGQV+Y+ + +E + L P +
Sbjct: 781 PPARRLSIKTFVRQNDDLVVREAILREILRGGQVYYLHNDVASIENTAEKLTALVPEARV 840
Query: 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389
+ HGQ R+LE M F +L+C+ I+E+G+D+ ANTII++ FGLAQL+Q
Sbjct: 841 IVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQ 900
Query: 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTI 449
LRGRVGR+ +A+AYL P +++ A RL ALE LG GF LA D+ IRG G +
Sbjct: 901 LRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGEL 960
Query: 450 FGEQQTGDVGNVGVDLFFEML---FESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
G +Q+G + ++G L+ E+L ++L + E + + + I++ + LP +Y+
Sbjct: 961 LGNEQSGQIESIGFSLYMELLDAAVKALKEGREPSLEELTQQQADIELRVPALLPDDYLG 1020
Query: 507 HLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADI 563
+ + + AE AE D + L ++G P + + LL+ +R + +
Sbjct: 1021 DVNMRLSFYKRIAAAESKAELD-----ELKVELIDRFGLLPDATKNLLQITELRLLVEPL 1075
Query: 564 GITKIYA 570
+ +I A
Sbjct: 1076 NVVRIDA 1082
>sp|P57381|MFD_BUCAI Transcription-repair-coupling factor OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=mfd PE=3 SV=1
Length = 812
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 197/539 (36%), Positives = 312/539 (57%), Gaps = 8/539 (1%)
Query: 40 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE-FAAQFPYEPTPDQKKAF 98
W + K K + L+ +Y R + + KN + F ++ T DQ +
Sbjct: 215 WNKEKHKISKTVYDHAAQLLHIYAKRESKTGFAFKKNIEKYDLFCNDCSFKTTSDQNEVM 274
Query: 99 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158
V +D++ + PMDRLICGDVGFGKTE+A+RA F VS KQ +L PT +LA+QH+
Sbjct: 275 KFVLKDMS-KPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQHYKN 333
Query: 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218
RFS +P + + +LSRFQ++ E++ K+G +NII+GTH LL + + +LGLL+
Sbjct: 334 FKIRFSNWP-VNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLGLLI 392
Query: 219 VDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK 278
+DEE RFGV KE I ++D+LTL+ATPIPRTL +A+TG +D S+I+ PP +RL IK
Sbjct: 393 IDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRLAIK 452
Query: 279 THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338
T + +S + I E+ RGGQV+Y+ +++ + + L P I I HGQ +
Sbjct: 453 TFIQEYSPILIRKTILREISRGGQVYYIYNKVQNIMNIAERLSILIPEASIKIGHGQMKN 512
Query: 339 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398
L++ M +F +LICT I+ESG+DI ANTII+++ FGL+QL+QLRGR+GR++
Sbjct: 513 IDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLSQLHQLRGRIGRSN 572
Query: 399 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
+A+A L + + ++ A +RL A+ G GF L+ +D+ IRG G I G++Q+G +
Sbjct: 573 NQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRGVGEILGKEQSGHI 632
Query: 459 GNVGVDLFFEMLFESLSKVDEHCVISVP---YKSVQIDININPRLPSEYINHLENPMEMV 515
N+G L+ ++L ++ + + SV K ++ID++++ LPS YI + +
Sbjct: 633 KNIGFSLYMDLLKNAIDLLKNGKIFSVEKSLKKPLEIDLHVSSLLPSSYILDINTRLFFY 692
Query: 516 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM 574
+ A + + + L Q+GK P + L+ +R +A IGI I ++ +
Sbjct: 693 KKLANAIHEK--QIEEIKYELIDQFGKLPDFSKNLILIAKIRLIADKIGIKYIKSNNNI 749
>sp|Q1RI82|MFD_RICBR Transcription-repair-coupling factor OS=Rickettsia bellii (strain
RML369-C) GN=mfd PE=3 SV=1
Length = 1120
Score = 343 bits (880), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 190/476 (39%), Positives = 279/476 (58%), Gaps = 9/476 (1%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYEPTPDQK 95
+ +W++ K K K I+++ + LM++ R L +F A+FP+ T DQ
Sbjct: 523 SVSWQKNKAKLKNRIKEIALHLMQIAAKRKLNTTAAIEFDLEEYDKFCAKFPFTETEDQL 582
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVL 151
A D+ DL+ MDRLICGDVGFGKTEVA+RA F V + Q V+ PT +L
Sbjct: 583 NAINDIREDLS-NGMLMDRLICGDVGFGKTEVAMRAAFMVAKSLNENSPQVAVVVPTTIL 641
Query: 152 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVY 211
QHF +ERF K D+ + LS S E + ++ G +NII+GTHSLL +
Sbjct: 642 CSQHFARFTERF-KDSDLNIKQLSSVVSSKEAKIVRSELESGKINIIIGTHSLLHKVTKF 700
Query: 212 NNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPP 271
NL LL++DEEQ FGV QKE + S K S VL +SATPIPRTL +++TG ++ S+I+TPP
Sbjct: 701 CNLKLLIIDEEQHFGVGQKEFLKSLKSSTHVLAMSATPIPRTLQMSMTGLKELSIIATPP 760
Query: 272 PERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAI 331
RL ++T + F + A+ +E RGG+ F+V+PRI +E+ L+Q P + +
Sbjct: 761 LNRLEVRTSVMPFDPVIIRDALLHEHFRGGKSFFVVPRINDIEDIEKQLKQIVPELSYKV 820
Query: 332 AHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLR 391
AHG+ +++E M +F G ILI T I+ESG+DIQ+ANT+I+ GL+QLYQLR
Sbjct: 821 AHGKMSPNKIDEIMSEFYAGKFDILISTTIIESGIDIQDANTMIIHKADMLGLSQLYQLR 880
Query: 392 GRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFG 451
GR+GR +AYL P ++ +L RL ++ LG GF +A DM +RGFG + G
Sbjct: 881 GRIGRGKMRGYAYLTLPSHKKMTPHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIG 940
Query: 452 EQQTGDVGNVGVDLFFEMLFESLSKV-DEHCVISVPYKSVQIDININPRLPSEYIN 506
E+Q+G + VG +L+ EML E ++ DE P+ I++ ++ +P Y++
Sbjct: 941 EEQSGQIREVGTELYQEMLEEQIAIFKDEPISGEQPFIPT-INLGLSVFIPDNYVS 995
>sp|Q9AKD5|MFD_RICTY Transcription-repair-coupling factor OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=mfd PE=3 SV=1
Length = 1120
Score = 342 bits (878), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 189/475 (39%), Positives = 274/475 (57%), Gaps = 7/475 (1%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYEPTPDQK 95
+ AW + K K K I+++ + L+++ R L P +F A FP+ T DQ
Sbjct: 523 SAAWHKSKAKLKDRIKEISLHLIQIAAKRKLNISTPIEFDLEEYDKFCANFPFIETEDQL 582
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK----QAMVLAPTIVL 151
A D+ +DLT MDRLICGDVGFGKTEVA+RA+F V + Q V+ PT +L
Sbjct: 583 TAINDIRKDLTNG-MLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEYLPQVAVVVPTTIL 641
Query: 152 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVY 211
QHF ERF + + + LS S E + G +NII+GTH+LL + +
Sbjct: 642 CSQHFSRFIERFKGF-GLNIKQLSSVVSSQEANIIRLELASGKINIIIGTHTLLHKNIKF 700
Query: 212 NNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPP 271
NL LL++DEEQ FGV QKE + S K S VL +SATPIPRTL ++LTG ++ S+I+TPP
Sbjct: 701 FNLKLLIIDEEQHFGVSQKEFLKSLKYSSHVLAMSATPIPRTLQMSLTGLKELSIIATPP 760
Query: 272 PERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAI 331
RL ++T + F + A+ E RGG+ FYV+PRIK +E+ L+Q P + I
Sbjct: 761 LNRLEVRTSVMPFDTVIIRDALLREHFRGGRSFYVVPRIKDMEDIEKQLKQIVPELSYKI 820
Query: 332 AHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLR 391
AHG+ +++E M +F G ILI T I+ESG+DI ANT+I+ + GL+QLYQLR
Sbjct: 821 AHGKMTPSKIDEVMSEFYAGKFDILISTTIIESGIDITEANTMIIHNADTLGLSQLYQLR 880
Query: 392 GRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFG 451
GR+GR +AYL L +L RL ++ LG GF +A D +RGFG + G
Sbjct: 881 GRIGRGKIRGYAYLTVASNKKLMQHSLRRLEIIQNSCALGSGFTIASHDADLRGFGNLIG 940
Query: 452 EQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
E+Q+G + VG +L+ EML E ++ + + ++S I++ ++ +P Y++
Sbjct: 941 EEQSGQIREVGAELYQEMLEEQIALLKDESIVSEQSFIPNINLGLSVFIPDHYVS 995
>sp|Q4UMJ0|MFD_RICFE Transcription-repair-coupling factor OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=mfd PE=3 SV=1
Length = 1142
Score = 340 bits (871), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 186/475 (39%), Positives = 275/475 (57%), Gaps = 7/475 (1%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYEPTPDQK 95
+++W+R K K K I+++ + L+++ R L +F A FP+ T DQ
Sbjct: 524 SSSWQRSKAKLKNRIKEIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQL 583
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK----QAMVLAPTIVL 151
A D++ DL MDRLICGDVGFGKTEVA+RA+F V + Q V+ PT +L
Sbjct: 584 TAINDIKEDL-RNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTIL 642
Query: 152 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVY 211
QHF ERF + + + LS S E + ++ G +NII+GTHSLL +
Sbjct: 643 CSQHFSRFIERFKGF-GLNIKQLSSVISAKEAKIIRSELESGKINIIIGTHSLLHKNTKF 701
Query: 212 NNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPP 271
NL LL++DEEQ FGV QKE + S K S VL +SATPIPRTL +++TG ++ S+I+TPP
Sbjct: 702 FNLKLLIIDEEQHFGVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPP 761
Query: 272 PERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAI 331
RL ++T + F + A+ E RGG+ FYV+PRIK +E+ L+Q P + I
Sbjct: 762 LNRLEVRTMVMPFDPVIIRDALLREHFRGGRSFYVVPRIKDIEDIEKQLKQIVPELSYKI 821
Query: 332 AHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLR 391
AHG+ +++E M +F G IL+ T I+ESG+DI ANT+++ GL+QLYQLR
Sbjct: 822 AHGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMVIHKADMLGLSQLYQLR 881
Query: 392 GRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFG 451
GR+GR +AYL ++ +L RL ++ LG GF +A DM +RGFG + G
Sbjct: 882 GRIGRGKVRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIG 941
Query: 452 EQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506
E+Q+G + VG +L+ EML E ++ + ++S I++ ++ +P YI+
Sbjct: 942 EEQSGQIKEVGTELYQEMLEEQIAIFKDEPIVSEQLFIPTINLGLSVFIPDNYIS 996
>sp|Q92H58|MFD_RICCN Transcription-repair-coupling factor OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=mfd PE=3 SV=1
Length = 1122
Score = 338 bits (868), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 184/474 (38%), Positives = 275/474 (58%), Gaps = 7/474 (1%)
Query: 37 TTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYEPTPDQK 95
+ +W+R K K K I+++ + L+++ R L +F A FP+ T DQ
Sbjct: 525 SVSWQRSKAKLKKRIKEIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQL 584
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK----QAMVLAPTIVL 151
A D++ DL MDRLICGDVGFGKTEVA+RA+F V + Q V+ PT +L
Sbjct: 585 IAINDIKEDL-RNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTIL 643
Query: 152 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVY 211
QHF ERF + + + LS S E + ++ G +NII+GTHSLL + +
Sbjct: 644 CSQHFSRFIERFKGF-GLNIKQLSSVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKF 702
Query: 212 NNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPP 271
NL LL++DEEQ FGV QKE + S K S VL +SATPIPRTL +++TG ++ S+I+TPP
Sbjct: 703 FNLKLLIIDEEQHFGVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPP 762
Query: 272 PERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAI 331
RL + T + + + A+ E RGG+ FYV+PRIK +E+ L+Q P + I
Sbjct: 763 LNRLEVHTSVMPYDPVIIRDALLREHFRGGRSFYVVPRIKDIEDIAKQLKQIVPELSYKI 822
Query: 332 AHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLR 391
A+G+ +++E M +F G IL+ T I+ESG+DI ANT+I+ + GL+QLYQLR
Sbjct: 823 AYGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLYQLR 882
Query: 392 GRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFG 451
GR+GR +AYL ++ +L RL ++ LG GF +A +DM +RGFG + G
Sbjct: 883 GRIGRGKMRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASRDMDLRGFGNLIG 942
Query: 452 EQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYI 505
E+Q+G + VG +L+ EML E ++ + ++S I++ ++ +P Y+
Sbjct: 943 EEQSGQIKEVGTELYQEMLEEQIAIFKDESIVSEQPFIPTINLGLSVFIPDNYV 996
>sp|O05955|MFD_RICPR Transcription-repair-coupling factor OS=Rickettsia prowazekii
(strain Madrid E) GN=mfd PE=3 SV=2
Length = 1120
Score = 338 bits (866), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 190/481 (39%), Positives = 275/481 (57%), Gaps = 8/481 (1%)
Query: 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYE 89
L+KL + AW + K K K I+++ + L+++ R L P A +F A FP+
Sbjct: 518 LNKLG-SVAWNKSKAKLKNRIKEISLHLIQIAAKRKLNISTPIELDLEAYDKFCANFPFS 576
Query: 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK----QAMVL 145
T DQ A D+ DLT MDRLICGDVGFGKTEVA+RA+F V + Q V+
Sbjct: 577 ETEDQLTAINDIREDLT-NGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEYLPQVAVV 635
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +L QHF ERF + + + LS S E + G +NII+GTH+LL
Sbjct: 636 VPTTILCSQHFSRFIERFKGF-GLNIKQLSSVISSKEANIIRLELASGKINIIIGTHALL 694
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
+ NL LL++DEEQ FGV QKE + S K S VL +SATPIPRTL +++TG ++ S
Sbjct: 695 HKNTKFFNLKLLIIDEEQHFGVSQKEFLKSLKSSTHVLAMSATPIPRTLQMSMTGLKELS 754
Query: 266 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325
+I+TPP RL ++T + F + A+ E RGG+ FYV PRIK +E+ L+Q P
Sbjct: 755 IIATPPLNRLEVRTSVMPFDPVIIRDALLREHFRGGRSFYVAPRIKDMEDIEKQLKQIVP 814
Query: 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 385
+ IAHG+ +++E M +F G ILI T I+ESG+DI ANT+I+ GL+
Sbjct: 815 ELSYKIAHGKMTPSKIDEVMSEFYVGKFDILISTTIIESGIDIAEANTMIIHKADTLGLS 874
Query: 386 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 445
QLYQLRGR+GR +AYL ++ +L RL ++ LG GF +A D +RG
Sbjct: 875 QLYQLRGRIGRGKIRGYAYLTVASNKKITSHSLRRLEIIQNSCSLGSGFTIASHDADLRG 934
Query: 446 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYI 505
FG + GE+Q+G + VG +L+ EML E ++ + + ++ I++ ++ +P Y+
Sbjct: 935 FGNLIGEEQSGQIKEVGTELYQEMLEEQIALLKDDPIVLEQAFIPNINLGLSVFIPDSYV 994
Query: 506 N 506
+
Sbjct: 995 S 995
>sp|Q9ZJ57|MFD_HELPJ Transcription-repair-coupling factor OS=Helicobacter pylori (strain
J99) GN=mfd PE=3 SV=1
Length = 1001
Score = 334 bits (857), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 190/503 (37%), Positives = 296/503 (58%), Gaps = 8/503 (1%)
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + +E T DQ+KA ++ RDL+ MDRL+ GDVGFGKTEVA+ AIFC G Q
Sbjct: 477 FKSHAGFEYTSDQEKAIAEISRDLSSHRV-MDRLLSGDVGFGKTEVAMHAIFCAFLNGFQ 535
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+ ++ PT +LA QHF+ + RF + +KV L R+ +EK + L ++ G +++++GT
Sbjct: 536 SALVVPTTLLAHQHFETLKARFENFG-VKVARLDRYIKTSEKSKLLKAVELGLVDVLIGT 594
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H++LG++ + NLGL+VVDEE +FGVKQKE + SV L++SATPIPRTL +AL+
Sbjct: 595 HAILGTK--FKNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQI 652
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
+ S + TPP +R P +T L + E + I EL R GQ+FY+ I + + L+
Sbjct: 653 KGISSLKTPPTDRKPSRTFLKEKNDELLKEIIYRELRRNGQIFYIHNHIASISKVKTKLE 712
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + IAI H Q + + EE M +FA+G ++L+CT+IVESG+ + NANTII+ + Q
Sbjct: 713 DLIPKLKIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQN 772
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
FGLA L+QLRGRVGR KE Y D+ L++QAL+RL ALE+ LG G +A D+
Sbjct: 773 FGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDL 832
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G+ Q+G + N+G L+ ML +++ ++ KSV+I + ++ L
Sbjct: 833 EIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELSGGK--KRLEKSVEIQLGVSAFLN 890
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
E I +++ +++ + Q E + ++GK L+ + ++ +A
Sbjct: 891 PELIASDSLRLDLYRRLSLC--ENVDEVGQIHEEIEDRFGKMDDLSAQFLQIITLKILAN 948
Query: 562 DIGITKIYASGKMVGMKTNMNKK 584
+GI K+ + + + + KK
Sbjct: 949 QLGILKLSNFNQNITLTYSDEKK 971
>sp|O26066|MFD_HELPY Transcription-repair-coupling factor OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=mfd PE=3 SV=1
Length = 999
Score = 328 bits (840), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 189/487 (38%), Positives = 287/487 (58%), Gaps = 10/487 (2%)
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F + +E T DQ+KA ++ +DL+ MDRL+ GDVGFGKTEVA+ AIFC G Q
Sbjct: 477 FKSHAGFEYTSDQEKAIAEISKDLSSHRV-MDRLLSGDVGFGKTEVAMHAIFCAFLNGFQ 535
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
+ ++ PT +LA QHF+ + RF + +KV L R+ S EK + L ++ G ++ ++GT
Sbjct: 536 SALVVPTTLLAHQHFETLRARFENF-GVKVARLDRYAS--EKNKLLKAVELGQVDALIGT 592
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 261
H++LG++ + NLGL+VVDEE +FGVKQKE + SV L++SATPIPRTL +AL+
Sbjct: 593 HAILGAK--FKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQI 650
Query: 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 321
+ S + TPP +R P +T L + E + I EL R GQ+FY+ I + + L+
Sbjct: 651 KGISSLKTPPTDRKPSRTFLKEKNDELLKEIIYRELRRNGQIFYIHNHIASILKVKTKLE 710
Query: 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381
P + IAI H Q + + EE M +FA+G ++L+CT+IVESG+ + NANTII+ + Q
Sbjct: 711 DLIPKLKIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQN 770
Query: 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 441
FGLA L+QLRGRVGR KE Y D+ L++QAL+RL ALE+ LG G +A D+
Sbjct: 771 FGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESVAYHDL 830
Query: 442 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 501
IRG G + G+ Q+G + N+G L+ ML +++ ++ KSV+I + ++ L
Sbjct: 831 EIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELSGGK--KRLEKSVEIQLGVSAFLN 888
Query: 502 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 561
E I +++ D + Q E + ++GK L+ + ++ +A
Sbjct: 889 PELIASDSLRLDLYRRLSLCENTD--EVGQIHEEIEDRFGKIDDLSAQFLQIITLKILAN 946
Query: 562 DIGITKI 568
+GI K+
Sbjct: 947 QLGIIKL 953
>sp|Q54900|RECG_STRPN ATP-dependent DNA helicase RecG OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=recG PE=3
SV=2
Length = 671
Score = 241 bits (616), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/382 (37%), Positives = 225/382 (58%), Gaps = 22/382 (5%)
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
P+ T Q+K+ ++ D+ + + M+RL+ GDVG GKT VA A+F V+AG QA ++
Sbjct: 249 LPFALTQAQEKSLQEILTDM-KSDHHMNRLLQGDVGSGKTVVAGLAMFAAVTAGYQAALM 307
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
PT +LA+QHF+ + F P++K+ LL+ AEK E L+ I G ++I+GTH+L+
Sbjct: 308 VPTEILAEQHFESLQNLF---PNLKLALLTGSLKAAEKREVLETIAKGEADLIIGTHALI 364
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 265
V Y LGL+++DE+ RFGV Q+ + + DVL ++ATPIPRTL + G D S
Sbjct: 365 QDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLMMTATPIPRTLAITAFGDMDVS 424
Query: 266 LISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF----- 319
+I P R PI T + +V++ ++ E+ +G QV+ + P I+ E +D
Sbjct: 425 IIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQVYVISPLIEE-SEALDLKNAIA 483
Query: 320 ----LQQAFPG-VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 374
L F G ++A+ HG+ S + ++ M+ F + IL+ T ++E G+++ NA +
Sbjct: 484 LSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATVM 543
Query: 375 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 434
I+ D +FGL+QL+QLRGRVGR DK+++A L K +D +R+ + E GF
Sbjct: 544 IIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK---TDSGKDRMRIMTETT---NGF 597
Query: 435 QLAEKDMGIRGFGTIFGEQQTG 456
LAE+D+ +RG G IFG +Q+G
Sbjct: 598 VLAEEDLKMRGSGEIFGTRQSG 619
>sp|Q55681|RECG_SYNY3 ATP-dependent DNA helicase RecG OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recG PE=3 SV=1
Length = 831
Score = 234 bits (597), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/393 (34%), Positives = 228/393 (58%), Gaps = 18/393 (4%)
Query: 74 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133
P + +F+ P+ T Q++ ++ +DL + +PM+RL+ GDVG GKT V + AI
Sbjct: 390 PHGELLEKFSDLLPFRLTQAQQRVVNEILQDLN-KPSPMNRLVQGDVGSGKTVVGVFAIL 448
Query: 134 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 193
+ G QA ++APT VLA+QH+ + F+ + V LL+ A++ E + G
Sbjct: 449 AALQGGYQAALMAPTEVLAEQHYQKLVSWFNLL-YLPVELLTGSTKTAKRREIHAQLSTG 507
Query: 194 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 253
L ++VGTH+L+ V + LGL+V+DE+ RFGV+Q+ K+ + + VL+++ATPIPRT
Sbjct: 508 QLPLLVGTHALIQETVNFQRLGLVVIDEQHRFGVQQRAKLLAKGNAPHVLSMTATPIPRT 567
Query: 254 LYLALTGFRDASLISTPPPERLPIKTH-LSAFSKEKVISAIKYELDRGGQVFYVLPRIK- 311
L L L G + S I PP R PI T ++A + ++ I+ E+ +G QV+ + P I+
Sbjct: 568 LALTLHGDLEVSQIDELPPGRQPIHTSVITAKERPQMYELIRREVAQGRQVYIIFPAIEE 627
Query: 312 --------GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 363
+EE ++ FP +I + HG+ S + E + F + +I++ T ++E
Sbjct: 628 SEKLDIKAAVEEHKYLTEKIFPNFNIGLLHGRLKSAEKEAALTAFREKQTEIIVSTTVIE 687
Query: 364 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 423
G+D+ NA +++++ ++FGL+QL+QLRGRVGR +++ L K S+ A +RL
Sbjct: 688 VGVDVPNATVMVIENAERFGLSQLHQLRGRVGRGSHQSYCLLVTNSK---SNDARQRLGV 744
Query: 424 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+E+ ++ GF +AE D+ +RG G G +Q+G
Sbjct: 745 MEQSQD---GFFIAEMDLRLRGPGEFLGTKQSG 774
>sp|O51528|RECG_BORBU ATP-dependent DNA helicase RecG OS=Borrelia burgdorferi (strain
ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=recG PE=3
SV=1
Length = 686
Score = 233 bits (595), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/383 (36%), Positives = 226/383 (59%), Gaps = 16/383 (4%)
Query: 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 142
+ P+E T DQK + ++ DL + PM+RL+ GDVG GKT VAL + ++ AG Q
Sbjct: 256 VSSLPFELTEDQKISIDEIFFDLNSSK-PMNRLLQGDVGSGKTLVALLSGLPLIEAGYQV 314
Query: 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202
+APT +LA+QH+D +S + + +I + LL+ K +KE+ L+ I++G +IVGTH
Sbjct: 315 AFMAPTDLLARQHYDNLSNILAPF-NISMTLLTGSLRKKDKEQALESIRNGTSGLIVGTH 373
Query: 203 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262
++ + L +++DE+ +FGV Q+E++ + VD+L +SATPIPR+ L L G
Sbjct: 374 AIFYESTEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDL 433
Query: 263 DASLISTPPPERLPIKTHLSAFSKE-KVISAIKYELDRGGQVFYVLPRIKGLE--EPMDF 319
+ S I T P RLPI T+L+ E KV ++ EL +G QV++V P I E E D
Sbjct: 434 EVSFIKTLPKGRLPITTYLARHGNEDKVYEFLRKELLKGHQVYFVYPLISSSEKFELKDV 493
Query: 320 ------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 373
L++ F + + H + S EE M+ F + IL+ T+++E G+D NA
Sbjct: 494 NNMCLKLKEVFGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATC 553
Query: 374 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 433
++V+ ++FGL+ L+Q+RGRVGR++ ++ +L Y K L+ RL ++E + G
Sbjct: 554 MVVEHAERFGLSTLHQIRGRVGRSNLQSFFFLLY--KEPLTSAGKFRLKTIKENLD---G 608
Query: 434 FQLAEKDMGIRGFGTIFGEQQTG 456
F++AE+D+ +RG G +FG +Q G
Sbjct: 609 FKIAEEDLRLRGPGNLFGLEQAG 631
>sp|O67837|RECG_AQUAE ATP-dependent DNA helicase RecG OS=Aquifex aeolicus (strain VF5)
GN=recG PE=3 SV=1
Length = 792
Score = 232 bits (592), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 142/427 (33%), Positives = 239/427 (55%), Gaps = 25/427 (5%)
Query: 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144
+ P++ T Q++A ++ DL+ R+ PM+RL+ GDVG GKT VA+ VV +G Q V
Sbjct: 356 KLPFKLTRAQERAIKEILEDLS-RDVPMNRLLQGDVGSGKTIVAILTSLAVVKSGYQVAV 414
Query: 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 204
+ PT +LA QH+ SE Y + V LL+ + ++K+ +K G+++++VGTH+L
Sbjct: 415 MVPTEILAHQHYKKFSEMLKDY-GVNVALLTGSLTPSQKKSVYKHVKEGNIHVLVGTHAL 473
Query: 205 LGSRVVYNNLGLLVVDEEQRFGVKQKEKI--ASFKISVDVLTLSATPIPRTLYLALTGFR 262
+ +V + NLG +++DE+ RFGV Q++ + + L +SATPIPRTL L++ G
Sbjct: 474 IQDKVEFKNLGYVIIDEQHRFGVMQRKLLLEKGKGLYPHCLVMSATPIPRTLALSIYGDL 533
Query: 263 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYE-LDRGGQVFYVLPRI--------KGL 313
D S+I PP R + T L S+++ + E L +G +V+ + P I K
Sbjct: 534 DISIIDELPPGRKEVITKLYFESQKEEVYKKVEEELKKGNKVYVIYPLIEESEKLNLKAA 593
Query: 314 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 373
E + ++ FP + + HG+ ++ ME+F + IL+ T ++E G+D+ A
Sbjct: 594 TEEYERWKKLFPDRKVLLLHGKMPDKEKLAVMEEFKREG-DILVSTTVIEVGIDVPEATV 652
Query: 374 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 433
++++D +FGL+QL+QLRGRVGR+DKEA+ L PD+ + ++ E L L + G
Sbjct: 653 MVIEDAHRFGLSQLHQLRGRVGRSDKEAYCLLVVPDE--IKNEKNESLKRLRVFVKTTDG 710
Query: 434 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 493
F++AE+D+ +RG G I G Q+G +F +L++ + ++ V K +
Sbjct: 711 FKIAEEDLKLRGPGEIIGVSQSG---------YFGFRVANLARSQDRALLGVARKDAEEL 761
Query: 494 ININPRL 500
+ NP L
Sbjct: 762 LKNNPNL 768
>sp|P96130|RECG_TREPA ATP-dependent DNA helicase RecG OS=Treponema pallidum (strain
Nichols) GN=recG PE=3 SV=1
Length = 686
Score = 227 bits (578), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 134/391 (34%), Positives = 225/391 (57%), Gaps = 29/391 (7%)
Query: 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145
P+E T DQK+ ++ +DL ERE PM RLI GDVG GKT VA + ++ G Q +L
Sbjct: 267 LPFELTVDQKRVITEITQDL-EREEPMARLIQGDVGSGKTLVAFFSCLKIIEQGGQVALL 325
Query: 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
APT +LA+QH D + R I++ L+ + L+ + G +N++VGTH+L
Sbjct: 326 APTELLARQHADTAA-RLLAPIGIRLAFLTGNVKSEGRAYLLEALVAGEINLVVGTHALF 384
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVD-------VLTLSATPIPRTLYLAL 258
V Y++L L+++DE+ RFGV Q+ + + ++ +SATPIPRTL L++
Sbjct: 385 SKSVRYHDLRLVIIDEQHRFGVLQRSALIQKGREGNPQGKTPHIIMMSATPIPRTLALSV 444
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRI------- 310
G D S+I + P R P+ T+++ +K EKV + E+++G Q +++ PRI
Sbjct: 445 FGDLDISIIKSMPGGRKPVITYIARKTKAEKVYEFVGNEIEKGRQAYFIYPRIHDIGLTD 504
Query: 311 -KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 369
K ++ +L+ F +A+ H + + + M+ F++G + IL+ T++VE G+D+
Sbjct: 505 LKSVQCMYMYLKNYFARYAVAMIHSKMTEEEQQRIMKYFSEGTVHILVATSVVEVGVDVP 564
Query: 370 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 429
NAN I+++ ++FGL+ L+QLRGRVGR D +++ +L + D+ +++ A RL + +
Sbjct: 565 NANCIVIEHAERFGLSALHQLRGRVGRGDVQSYCFLMHGDE--MTECAKRRLKIMGSTAD 622
Query: 430 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGN 460
GF +AE+D+ +RG G + GD N
Sbjct: 623 ---GFVIAEEDLKLRGPGDV------GDTKN 644
>sp|Q5HPW4|RECG_STAEQ ATP-dependent DNA helicase RecG OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=recG PE=3 SV=1
Length = 682
Score = 225 bits (573), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 226/388 (58%), Gaps = 19/388 (4%)
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ +F P+E T QK + ++ RDL + M RL+ GDVG GKT VA ++ + +A
Sbjct: 250 VKQFIDSLPFELTDAQKVSVNEIFRDL-KAPIRMHRLLQGDVGSGKTIVAAICMYALKTA 308
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G Q+ ++ PT +LA+QH + + + F + V LL+ ++ L+ +++G ++ +
Sbjct: 309 GYQSALMVPTEILAEQHAESLMQLFGN--TMNVALLTGSVKGKKRRLLLEQLENGTIDCL 366
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH+L+ VV+NN+GL++ DE+ RFGV Q++ + +VL ++ATPIPRTL +++
Sbjct: 367 IGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMTATPIPRTLAISV 426
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
G D S I P R PIKT + + ++V++ + EL +G Q + + P I+ E
Sbjct: 427 FGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICPLIESSEHLE 486
Query: 318 DF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368
D LQ + + + HG+ + ++ M+KF++ I IL+ T +VE G+++
Sbjct: 487 DVQNVVELYESLQSDYGNEKVGLLHGKMTAEDKDQVMQKFSEHEIDILVSTTVVEVGVNV 546
Query: 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 428
NA +++ D +FGL+ L+QLRGRVGR++ +++ L K ++ +ER+ + +
Sbjct: 547 PNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK---TETGIERMTIMTQTT 603
Query: 429 ELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ GF+L+E+D+ +RG G FG +Q+G
Sbjct: 604 D---GFELSERDLEMRGPGDFFGVKQSG 628
>sp|Q8CSV3|RECG_STAES ATP-dependent DNA helicase RecG OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=recG PE=3 SV=1
Length = 682
Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 226/388 (58%), Gaps = 19/388 (4%)
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ +F P+E T QK + ++ RDL + M RL+ GDVG GKT VA ++ + +A
Sbjct: 250 VKQFIDSLPFELTDAQKVSVNEIFRDL-KAPIRMHRLLQGDVGSGKTVVAAICMYALKTA 308
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G Q+ ++ PT +LA+QH + + + F + V LL+ ++ L+ +++G ++ +
Sbjct: 309 GYQSALMVPTEILAEQHAESLIQLFGN--TMNVALLTGSVKGKKRRLLLEQLENGTIDCL 366
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH+L+ VV+NN+GL++ DE+ RFGV Q++ + +VL ++ATPIPRTL +++
Sbjct: 367 IGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMTATPIPRTLAISV 426
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
G D S I P R PIKT + + ++V++ + EL +G Q + + P I+ E
Sbjct: 427 FGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICPLIESSEHLE 486
Query: 318 DF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368
D LQ + + + HG+ + ++ M+KF++ I IL+ T +VE G+++
Sbjct: 487 DVQNVVALYESLQSDYGNEKVGLLHGKMSAEDKDQVMQKFSKHEIDILVSTTVVEVGVNV 546
Query: 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 428
NA +++ D +FGL+ L+QLRGRVGR++ +++ L K ++ +ER+ + +
Sbjct: 547 PNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK---TETGIERMTIMTQTT 603
Query: 429 ELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ GF+L+E+D+ +RG G FG +Q+G
Sbjct: 604 D---GFELSERDLEMRGPGDFFGVKQSG 628
>sp|Q5HGK6|RECG_STAAC ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
COL) GN=recG PE=3 SV=1
Length = 686
Score = 223 bits (568), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 226/388 (58%), Gaps = 19/388 (4%)
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F + P+E T QK + ++ RDL + M RL+ GDVG GKT VA ++ + +A
Sbjct: 254 VKSFIDRLPFELTEAQKSSVNEIFRDL-KAPIRMHRLLQGDVGSGKTVVAAICMYALKTA 312
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G Q+ ++ PT +LA+QH + + F + V LL+ +++ L+ +++G ++ +
Sbjct: 313 GYQSALMVPTEILAEQHAESLMALFGD--SMNVALLTGSVKGKKRKILLEQLENGTIDCL 370
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH+L+ V+++N+GL++ DE+ RFGV Q++ + +VL ++ATPIPRTL +++
Sbjct: 371 IGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISV 430
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
G D S I P R PI T + + +KV+ + EL +G Q + + P I+ E
Sbjct: 431 FGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLE 490
Query: 318 DF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368
D LQQ + + + HG+ + + +E M+KF+ I +L+ T +VE G+++
Sbjct: 491 DVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEINVLVSTTVVEVGVNV 550
Query: 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 428
NA +++ D +FGL+ L+QLRGRVGR+D++++ L K ++ +ER+ + +
Sbjct: 551 PNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK---TETGIERMTIMTQTT 607
Query: 429 ELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ GF+L+E+D+ +RG G FG +Q+G
Sbjct: 608 D---GFELSERDLEMRGPGDFFGVKQSG 632
>sp|O50581|RECG_STAA8 ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
NCTC 8325) GN=recG PE=3 SV=1
Length = 686
Score = 223 bits (568), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 226/388 (58%), Gaps = 19/388 (4%)
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F + P+E T QK + ++ RDL + M RL+ GDVG GKT VA ++ + +A
Sbjct: 254 VKSFIDRLPFELTEAQKSSVNEIFRDL-KAPIRMHRLLQGDVGSGKTVVAAICMYALKTA 312
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G Q+ ++ PT +LA+QH + + F + V LL+ +++ L+ +++G ++ +
Sbjct: 313 GYQSALMVPTEILAEQHAESLMALFGD--SMNVALLTGSVKGKKRKILLEQLENGTIDCL 370
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH+L+ V+++N+GL++ DE+ RFGV Q++ + +VL ++ATPIPRTL +++
Sbjct: 371 IGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISV 430
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
G D S I P R PI T + + +KV+ + EL +G Q + + P I+ E
Sbjct: 431 FGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLE 490
Query: 318 DF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368
D LQQ + + + HG+ + + +E M+KF+ I +L+ T +VE G+++
Sbjct: 491 DVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEINVLVSTTVVEVGVNV 550
Query: 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 428
NA +++ D +FGL+ L+QLRGRVGR+D++++ L K ++ +ER+ + +
Sbjct: 551 PNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK---TETGIERMTIMTQTT 607
Query: 429 ELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ GF+L+E+D+ +RG G FG +Q+G
Sbjct: 608 D---GFELSERDLEMRGPGDFFGVKQSG 632
>sp|P64325|RECG_STAAN ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
N315) GN=recG PE=1 SV=1
Length = 686
Score = 223 bits (567), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 226/388 (58%), Gaps = 19/388 (4%)
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F + P+E T QK + ++ RDL + M RL+ GDVG GKT VA ++ + +A
Sbjct: 254 VKSFIDRLPFELTEAQKSSVNEIFRDL-KAPIRMHRLLQGDVGSGKTVVAAICMYALKTA 312
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G Q+ ++ PT +LA+QH + + F + V LL+ +++ L+ +++G ++ +
Sbjct: 313 GYQSALMVPTEILAEQHAESLMALFGD--SMNVALLTGSVKGKKRKILLEQLENGTIDCL 370
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH+L+ V+++N+GL++ DE+ RFGV Q++ + +VL ++ATPIPRTL +++
Sbjct: 371 IGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISV 430
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
G D S I P R PI T + + +KV+ + EL +G Q + + P I+ E
Sbjct: 431 FGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLE 490
Query: 318 DF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368
D LQQ + + + HG+ + + +E M+KF+ I +L+ T +VE G+++
Sbjct: 491 DVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNV 550
Query: 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 428
NA +++ D +FGL+ L+QLRGRVGR+D++++ L K ++ +ER+ + +
Sbjct: 551 PNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK---TETGIERMTIMTQTT 607
Query: 429 ELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ GF+L+E+D+ +RG G FG +Q+G
Sbjct: 608 D---GFELSERDLEMRGPGDFFGVKQSG 632
>sp|P64324|RECG_STAAM ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=recG PE=1 SV=1
Length = 686
Score = 223 bits (567), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 226/388 (58%), Gaps = 19/388 (4%)
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F + P+E T QK + ++ RDL + M RL+ GDVG GKT VA ++ + +A
Sbjct: 254 VKSFIDRLPFELTEAQKSSVNEIFRDL-KAPIRMHRLLQGDVGSGKTVVAAICMYALKTA 312
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G Q+ ++ PT +LA+QH + + F + V LL+ +++ L+ +++G ++ +
Sbjct: 313 GYQSALMVPTEILAEQHAESLMALFGD--SMNVALLTGSVKGKKRKILLEQLENGTIDCL 370
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH+L+ V+++N+GL++ DE+ RFGV Q++ + +VL ++ATPIPRTL +++
Sbjct: 371 IGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISV 430
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
G D S I P R PI T + + +KV+ + EL +G Q + + P I+ E
Sbjct: 431 FGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLE 490
Query: 318 DF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368
D LQQ + + + HG+ + + +E M+KF+ I +L+ T +VE G+++
Sbjct: 491 DVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNV 550
Query: 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 428
NA +++ D +FGL+ L+QLRGRVGR+D++++ L K ++ +ER+ + +
Sbjct: 551 PNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK---TETGIERMTIMTQTT 607
Query: 429 ELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ GF+L+E+D+ +RG G FG +Q+G
Sbjct: 608 D---GFELSERDLEMRGPGDFFGVKQSG 632
>sp|Q8NX11|RECG_STAAW ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
MW2) GN=recG PE=3 SV=1
Length = 686
Score = 223 bits (567), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 226/388 (58%), Gaps = 19/388 (4%)
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F + P+E T QK + ++ RDL + M RL+ GDVG GKT VA ++ + +A
Sbjct: 254 VKSFIDRLPFELTEAQKSSVNEIFRDL-KAPIRMHRLLQGDVGSGKTVVAAICMYALKTA 312
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G Q+ ++ PT +LA+QH + + F + V LL+ +++ L+ +++G ++ +
Sbjct: 313 GYQSALMVPTEILAEQHAESLMALFGD--SMNVALLTGSVKGKKRKILLEQLENGTIDCL 370
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH+L+ V+++N+GL++ DE+ RFGV Q++ + +VL ++ATPIPRTL +++
Sbjct: 371 IGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISV 430
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
G D S I P R PI T + + +KV+ + EL +G Q + + P I+ E
Sbjct: 431 FGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLE 490
Query: 318 DF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368
D LQQ + + + HG+ + + +E M+KF+ I +L+ T +VE G+++
Sbjct: 491 DVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNV 550
Query: 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 428
NA +++ D +FGL+ L+QLRGRVGR+D++++ L K ++ +ER+ + +
Sbjct: 551 PNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK---TETGIERMTIMTQTT 607
Query: 429 ELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ GF+L+E+D+ +RG G FG +Q+G
Sbjct: 608 D---GFELSERDLEMRGPGDFFGVKQSG 632
>sp|Q6G9Y6|RECG_STAAS ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
MSSA476) GN=recG PE=3 SV=1
Length = 686
Score = 223 bits (567), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 226/388 (58%), Gaps = 19/388 (4%)
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F + P+E T QK + ++ RDL + M RL+ GDVG GKT VA ++ + +A
Sbjct: 254 VKSFIDRLPFELTEAQKSSVNEIFRDL-KAPIRMHRLLQGDVGSGKTVVAAICMYALKTA 312
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G Q+ ++ PT +LA+QH + + F + V LL+ +++ L+ +++G ++ +
Sbjct: 313 GYQSALMVPTEILAEQHAESLMALFGD--SMNVALLTGSVKGKKRKILLEQLENGTIDCL 370
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH+L+ V+++N+GL++ DE+ RFGV Q++ + +VL ++ATPIPRTL +++
Sbjct: 371 IGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISV 430
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
G D S I P R PI T + + +KV+ + EL +G Q + + P I+ E
Sbjct: 431 FGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLE 490
Query: 318 DF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368
D LQQ + + + HG+ + + +E M+KF+ I +L+ T +VE G+++
Sbjct: 491 DVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNV 550
Query: 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 428
NA +++ D +FGL+ L+QLRGRVGR+D++++ L K ++ +ER+ + +
Sbjct: 551 PNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK---TETGIERMTIMTQTT 607
Query: 429 ELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ GF+L+E+D+ +RG G FG +Q+G
Sbjct: 608 D---GFELSERDLEMRGPGDFFGVKQSG 632
>sp|Q6GHK8|RECG_STAAR ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
MRSA252) GN=recG PE=3 SV=1
Length = 686
Score = 219 bits (557), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 126/388 (32%), Positives = 225/388 (57%), Gaps = 19/388 (4%)
Query: 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138
+ F + P+E T QK + ++ RDL + M RL+ GDVG GKT VA ++ + +A
Sbjct: 254 VKSFIDRLPFELTEAQKSSVNEIFRDL-KAPIRMHRLLQGDVGSGKTVVAAICMYALKTA 312
Query: 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 198
G Q+ ++ PT +LA+QH + + F + V LL+ +++ L+ +++ ++ +
Sbjct: 313 GYQSALMVPTEILAEQHAESLIALFGD--SMNVALLTGSVKGKKRKILLEQLENRTIDCL 370
Query: 199 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258
+GTH+L+ V+++N+GL++ DE+ RFGV Q++ + +VL ++ATPIPRTL +++
Sbjct: 371 IGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISV 430
Query: 259 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317
G D S I P R PI T + + +KV+ + EL +G Q + + P I+ E
Sbjct: 431 FGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLE 490
Query: 318 DF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368
D LQQ + + + HG+ + + +E M+KF+ I +L+ T +VE G+++
Sbjct: 491 DVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNV 550
Query: 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 428
NA +++ D +FGL+ L+QLRGRVGR+D++++ L K ++ +ER+ + +
Sbjct: 551 PNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK---TETGIERMTIMTQTT 607
Query: 429 ELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ GF+L+E+D+ +RG G FG +Q+G
Sbjct: 608 D---GFELSERDLEMRGPGDFFGVKQSG 632
>sp|Q8XD86|RECG_ECO57 ATP-dependent DNA helicase RecG OS=Escherichia coli O157:H7 GN=recG
PE=3 SV=1
Length = 693
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 138/402 (34%), Positives = 218/402 (54%), Gaps = 22/402 (5%)
Query: 72 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130
P N A+ + A P++PT Q + ++ERD+ + PM RL+ GDVG GKT VA
Sbjct: 250 PLSANDALKNKLLAALPFKPTGAQARVVAEIERDMA-LDVPMMRLVQGDVGSGKTLVAAL 308
Query: 131 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190
A ++ GKQ ++APT +LA+QH + F I+VG L+ Q + + I
Sbjct: 309 AALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPL-GIEVGWLAGKQKGKARLSQQEAI 367
Query: 191 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK----EKIASFKISVDVLTLS 246
G + +IVGTH++ +V +N L L+++DE+ RFGV Q+ EK L ++
Sbjct: 368 ASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMT 427
Query: 247 ATPIPRTLYLALTGFRDASLISTPPPERLPIKT-HLSAFSKEKVISAIKYE-LDRGGQVF 304
ATPIPRTL + D S+I PP R P+ T + + +I +++ + G Q +
Sbjct: 428 ATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRHACITEGRQAY 487
Query: 305 YVLPRI--------KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKIL 356
+V I + E + L+ A P +++ + HG+ + + M F QG + +L
Sbjct: 488 WVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLL 547
Query: 357 ICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQ 416
+ T ++E G+D+ NA+ +I+++ ++ GLAQL+QLRGRVGR +H L Y K+ LS
Sbjct: 548 VATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLY--KTPLSKT 605
Query: 417 ALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
A RL L R+ GF +A+KD+ IRG G + G +QTG+
Sbjct: 606 AQIRLQVL---RDSNDGFVIAQKDLEIRGPGELLGTRQTGNA 644
>sp|P24230|RECG_ECOLI ATP-dependent DNA helicase RecG OS=Escherichia coli (strain K12)
GN=recG PE=1 SV=1
Length = 693
Score = 217 bits (552), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 135/389 (34%), Positives = 213/389 (54%), Gaps = 21/389 (5%)
Query: 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143
A P++PT Q + ++ERD+ + PM RL+ GDVG GKT VA A ++ GKQ
Sbjct: 263 AALPFKPTGAQARVVAEIERDMA-LDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVA 321
Query: 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203
++APT +LA+QH + F+ I+VG L+ Q + + I G + +IVGTH+
Sbjct: 322 LMAPTELLAEQHANNFRNWFAPL-GIEVGWLAGKQKGKARLAQQEAIASGQVQMIVGTHA 380
Query: 204 LLGSRVVYNNLGLLVVDEEQRFGVKQK----EKIASFKISVDVLTLSATPIPRTLYLALT 259
+ +V +N L L+++DE+ RFGV Q+ EK L ++ATPIPRTL +
Sbjct: 381 IFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAY 440
Query: 260 GFRDASLISTPPPERLPIKT-HLSAFSKEKVISAIKYE-LDRGGQVFYVLPRI------- 310
D S+I PP R P+ T + + +I + + + G Q ++V I
Sbjct: 441 ADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVHHACITEGRQAYWVCTLIEESELLE 500
Query: 311 -KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 369
+ E + L+ A P +++ + HG+ + + M F QG + +L+ T ++E G+D+
Sbjct: 501 AQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVP 560
Query: 370 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 429
NA+ +I+++ ++ GLAQL+QLRGRVGR +H L Y K+ LS A RL L R+
Sbjct: 561 NASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLY--KTPLSKTAQIRLQVL---RD 615
Query: 430 LGQGFQLAEKDMGIRGFGTIFGEQQTGDV 458
GF +A+KD+ IRG G + G +QTG+
Sbjct: 616 SNDGFVIAQKDLEIRGPGELLGTRQTGNA 644
>sp|O34942|RECG_BACSU ATP-dependent DNA helicase RecG OS=Bacillus subtilis (strain 168)
GN=recG PE=3 SV=1
Length = 682
Score = 216 bits (549), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 130/393 (33%), Positives = 227/393 (57%), Gaps = 22/393 (5%)
Query: 76 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETP--MDRLICGDVGFGKTEVALRAIF 133
N + F P+ T Q + ++ D++ +P M+RL+ GDVG GKT VA A++
Sbjct: 243 NEELMRFIKSLPFPLTNAQSRVLREITADMS---SPYRMNRLLQGDVGSGKTAVAAIALY 299
Query: 134 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 193
+ +G Q ++ PT +LA+QH D + F K+ D+ V LL+ ++E L+ + G
Sbjct: 300 AAILSGYQGALMVPTEILAEQHADSLVSLFEKW-DVSVALLTSSVKGKRRKELLERLAAG 358
Query: 194 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 253
++I+VGTH+L+ V + L L++ DE+ RFGV+Q++K+ + DVL ++ATPIPRT
Sbjct: 359 EIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLRNKGQDPDVLFMTATPIPRT 418
Query: 254 LYLALTGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIK- 311
L + + G D S+I P R I+T+ +++++ ++ EL +G Q + + P I+
Sbjct: 419 LAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEE 478
Query: 312 ----GLEEPMD---FLQQAFPG-VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 363
++ +D L F G ++ + HG+ +S + ++ M +F+ +IL+ T +VE
Sbjct: 479 SDKLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVE 538
Query: 364 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 423
G+++ NA +++ D +FGL+QL+QLRGRVGR + ++ L K S+ ER+
Sbjct: 539 VGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGEHQSFCILMADPK---SETGKERMRI 595
Query: 424 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
+ E + GF+L+EKD+ +RG G FG++Q+G
Sbjct: 596 MSETND---GFELSEKDLELRGPGDFFGKKQSG 625
>sp|P43809|RECG_HAEIN ATP-dependent DNA helicase RecG OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recG PE=3 SV=1
Length = 693
Score = 214 bits (545), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 133/389 (34%), Positives = 219/389 (56%), Gaps = 21/389 (5%)
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F A P++PT QK+ D+E+DL ++ PM RL+ GDVG GKT VA A + GKQ
Sbjct: 261 FLATLPFQPTNAQKRVVSDIEQDLI-KDYPMMRLVQGDVGSGKTLVAALAALTAIDNGKQ 319
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201
++APT +LA+QH + F + I+VG L+ ++ L+ IK G + ++VGT
Sbjct: 320 VALMAPTEILAEQHANNFRRWFKPF-GIEVGWLAGKVKGKSRQAELEKIKTGAVQMVVGT 378
Query: 202 HSLLGSRVVYNNLGLLVVDEEQRFGVKQK----EKIASFKISVDVLTLSATPIPRTLYLA 257
H+L V +++L L+++DE+ RFGV Q+ EK L ++ATPIPRTL +
Sbjct: 379 HALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAGFYPHQLIMTATPIPRTLAMT 438
Query: 258 LTGFRDASLISTPPPERLPIKTHL-SAFSKEKVISAIKYE-LDRGGQVFYVLPRI----- 310
+ D S+I PP R PI T + S + +++ +K ++ Q ++V I
Sbjct: 439 VYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNACVNEKRQAYWVCTLIDESEV 498
Query: 311 ---KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 367
+ E + L +A P ++I + HG+ ++ ++ M +F + +L+ T ++E G+D
Sbjct: 499 LEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVD 558
Query: 368 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 427
+ NA+ +I+++ ++ GL+QL+QLRGRVGR + L Y K L + +RL L +
Sbjct: 559 VPNASLMIIENAERLGLSQLHQLRGRVGRGCTASFCVLMY--KPPLGKVSQKRLQVLRDS 616
Query: 428 RELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
++ GF ++EKD+ IRG G + G +QTG
Sbjct: 617 QD---GFVISEKDLEIRGPGEVLGTKQTG 642
>sp|Q9CMB4|RECG_PASMU ATP-dependent DNA helicase RecG OS=Pasteurella multocida (strain
Pm70) GN=recG PE=3 SV=1
Length = 693
Score = 212 bits (539), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 138/390 (35%), Positives = 218/390 (55%), Gaps = 23/390 (5%)
Query: 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141
F AQ P+ PT Q + ++E+DLT PM RL+ GDVG GKT VA A + GKQ
Sbjct: 261 FLAQLPFTPTDAQVRVTQEIEQDLTH-PFPMMRLVQGDVGSGKTLVAALAALLAIDNGKQ 319
Query: 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLS-RFQSKAEKEEHLDMIKHGHLNIIVG 200
++APT +LA+QH F I+VG L+ + + KA + E L+ I+ G + ++VG
Sbjct: 320 VALMAPTEILAEQHATNFRRWFESL-GIEVGWLAGKVKGKARQTE-LEKIRTGQVQMVVG 377
Query: 201 THSLLGSRVVYNNLGLLVVDEEQRFGVKQK----EKIASFKISVDVLTLSATPIPRTLYL 256
TH+L V +++L L++VDE+ RFGV Q+ EK L ++ATPIPRTL +
Sbjct: 378 THALFQDEVEFSDLALVIVDEQHRFGVHQRLMLREKGKQADHYPHQLIMTATPIPRTLAM 437
Query: 257 ALTGFRDASLISTPPPERLPIKT-HLSAFSKEKVISAIKYE-LDRGGQVFYVLPRIKGLE 314
+ D S+I PP R PI T +S + +VI+ + + ++ Q ++V I E
Sbjct: 438 TVYADLDTSIIDELPPGRTPITTVAISEERRAEVIARVNHACVNEKRQAYWVCTLIDESE 497
Query: 315 --------EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 366
+ L++ P + I + HG+ + ++ M+ F Q I +L+ T ++E G+
Sbjct: 498 VLEAQAAEAIAEDLRKILPHLRIGLVHGRMKPAEKQDIMQAFKQAEIDLLVATTVIEVGV 557
Query: 367 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 426
D+ NA+ +I+++ ++ GL+QL+QLRGRVGR + L Y K L + +RL L +
Sbjct: 558 DVPNASLMIIENAERLGLSQLHQLRGRVGRGTTASFCVLMY--KPPLGKISQKRLQVLRD 615
Query: 427 CRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
++ GF ++EKD+ IRG G + G +QTG
Sbjct: 616 TQD---GFVISEKDLEIRGPGEVLGTKQTG 642
>sp|O69460|RECG_MYCLE ATP-dependent DNA helicase RecG OS=Mycobacterium leprae (strain TN)
GN=recG PE=3 SV=2
Length = 743
Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 148/463 (31%), Positives = 235/463 (50%), Gaps = 60/463 (12%)
Query: 41 ERRKTKGKVAIQKMVVDLMELYLHR---LKQKRPPYP--KNPAIAEFAAQFPYEPTPDQK 95
+RR+ + ++ + V L R L + P P + +AE + P+E T Q+
Sbjct: 234 DRRRARERLTFDEAVGLQWALVTRRHGELSESGPSAPPRSDGLMAELMRRLPFELTEGQR 293
Query: 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155
+ DV D P++RL+ G+VG GKT VA+ A+ ++ AG Q ++LAPT VLA QH
Sbjct: 294 E-VRDVLSDGLAATRPLNRLLQGEVGSGKTIVAVLAMLQMIDAGYQCVLLAPTEVLAAQH 352
Query: 156 F----DVVS------ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 205
DV+ + +V LL+ + A+K++ I G I++GTH+LL
Sbjct: 353 LLSIRDVLGPLGMGCQLGGAENATQVALLTGSMTMAQKKKVRADIFSGQTGIVIGTHALL 412
Query: 206 GSRVVYNNLGLLVVDEEQRFGVKQKEKI---ASFKISVDVLTLSATPIPRTLYLALTGFR 262
+ ++NLG++VVDE+ RFGV+Q++++ A I +L ++ATPIPRT+ L + G
Sbjct: 413 QDAIEFHNLGMVVVDEQHRFGVEQRDQLRTKARTGIMPHLLVMTATPIPRTVALTVYGDL 472
Query: 263 DASLISTPPPERLPIKTHLSAFSKEK------VISAIKYELDRGGQVFYVLPRIKGLEEP 316
+ S + P R PI +++ F K+K I E+ G Q + V PRI E+P
Sbjct: 473 EMSTLRELPRGRQPITSNV-IFVKDKPGWLDRAWQRILEEVAAGRQAYVVAPRIDETEDP 531
Query: 317 MDFLQQAFPG-----------------VDIAIAHGQQYSRQLEETMEKFAQGAIKILICT 359
Q + P V +A+ HG+ + + + M F G I +L+CT
Sbjct: 532 QKGGQNSRPSETADGLYARLRSGELANVRLALMHGRLSADEKDAAMMAFRAGEIDVLVCT 591
Query: 360 NIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQ--- 416
N++E G+D+ NA ++V D +FG++QL+QLRGR+GR +P LL+
Sbjct: 592 NVIEVGVDVPNATIMLVMDADRFGISQLHQLRGRIGRGT--------HPSLCLLASWVSP 643
Query: 417 ---ALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 456
A RL A+ E + GF LA+ D+ R G + G Q+G
Sbjct: 644 GSPAGRRLCAVAETMD---GFALADLDLKERREGDVLGRNQSG 683
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,330,414
Number of Sequences: 539616
Number of extensions: 9835447
Number of successful extensions: 28121
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 555
Number of HSP's that attempted gapping in prelim test: 27000
Number of HSP's gapped (non-prelim): 1309
length of query: 643
length of database: 191,569,459
effective HSP length: 124
effective length of query: 519
effective length of database: 124,657,075
effective search space: 64697021925
effective search space used: 64697021925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)