Query 006476
Match_columns 643
No_of_seqs 644 out of 4227
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 23:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1197 Mfd Transcription-repa 100.0 3E-127 6E-132 1088.5 62.5 625 2-636 500-1136(1139)
2 PRK10689 transcription-repair 100.0 4E-100 9E-105 902.8 69.3 621 4-634 508-1143(1147)
3 TIGR00580 mfd transcription-re 100.0 2E-100 5E-105 887.9 61.1 558 4-569 359-926 (926)
4 COG1200 RecG RecG-like helicas 100.0 4.7E-71 1E-75 600.2 43.2 425 28-459 196-635 (677)
5 PRK10917 ATP-dependent DNA hel 100.0 2.2E-61 4.7E-66 554.6 50.8 425 28-459 195-633 (681)
6 TIGR00643 recG ATP-dependent D 100.0 9.3E-61 2E-65 546.0 50.5 425 28-459 168-610 (630)
7 KOG0331 ATP-dependent RNA heli 100.0 1.9E-51 4.1E-56 441.3 32.0 338 73-427 96-463 (519)
8 PRK11776 ATP-dependent RNA hel 100.0 1.6E-49 3.4E-54 440.2 38.9 326 72-411 8-350 (460)
9 KOG0330 ATP-dependent RNA heli 100.0 2.5E-50 5.5E-55 407.3 28.9 323 72-410 65-407 (476)
10 COG0513 SrmB Superfamily II DN 100.0 7.2E-49 1.6E-53 436.9 34.2 323 73-410 34-380 (513)
11 PRK11634 ATP-dependent RNA hel 100.0 3.6E-49 7.8E-54 447.4 32.0 325 73-411 11-353 (629)
12 PRK04837 ATP-dependent RNA hel 100.0 5.9E-48 1.3E-52 423.2 34.4 325 71-410 11-362 (423)
13 PTZ00110 helicase; Provisional 100.0 3E-47 6.6E-52 427.6 37.0 319 78-411 141-485 (545)
14 PRK10590 ATP-dependent RNA hel 100.0 4E-47 8.6E-52 419.9 36.4 324 73-411 6-353 (456)
15 KOG0345 ATP-dependent RNA heli 100.0 9.3E-47 2E-51 389.3 31.2 325 75-410 13-364 (567)
16 PLN00206 DEAD-box ATP-dependen 100.0 3.3E-46 7.2E-51 417.8 36.9 320 78-411 132-476 (518)
17 PRK04537 ATP-dependent RNA hel 100.0 3.1E-46 6.7E-51 420.9 36.9 325 72-411 13-365 (572)
18 KOG0333 U5 snRNP-like RNA heli 100.0 4.1E-46 8.8E-51 388.4 31.3 320 78-412 256-626 (673)
19 KOG0338 ATP-dependent RNA heli 100.0 5.6E-47 1.2E-51 393.3 24.4 318 77-411 191-534 (691)
20 PRK11192 ATP-dependent RNA hel 100.0 1.4E-45 3.1E-50 405.9 37.2 324 73-411 6-353 (434)
21 PRK01297 ATP-dependent RNA hel 100.0 2.9E-45 6.3E-50 407.4 37.0 325 73-411 92-443 (475)
22 KOG0328 Predicted ATP-dependen 100.0 3E-46 6.5E-51 363.1 22.7 320 77-411 37-374 (400)
23 KOG0343 RNA Helicase [RNA proc 100.0 3.4E-45 7.5E-50 383.0 29.3 346 52-411 50-423 (758)
24 PTZ00424 helicase 45; Provisio 100.0 1.7E-44 3.7E-49 393.4 35.3 324 73-411 33-375 (401)
25 KOG0340 ATP-dependent RNA heli 100.0 5.5E-45 1.2E-49 364.8 25.8 336 71-427 10-372 (442)
26 TIGR00614 recQ_fam ATP-depende 100.0 3.3E-44 7.2E-49 397.9 33.7 310 82-411 3-334 (470)
27 KOG0336 ATP-dependent RNA heli 100.0 6.6E-45 1.4E-49 368.8 23.2 331 78-426 231-586 (629)
28 KOG0342 ATP-dependent RNA heli 100.0 1.7E-44 3.6E-49 375.3 25.4 325 73-412 87-439 (543)
29 TIGR03817 DECH_helic helicase/ 100.0 5.3E-43 1.2E-47 404.3 36.9 317 78-410 25-386 (742)
30 PLN03137 ATP-dependent DNA hel 100.0 5.5E-43 1.2E-47 402.2 34.1 320 72-411 441-788 (1195)
31 KOG0335 ATP-dependent RNA heli 100.0 4E-43 8.7E-48 371.0 26.5 318 78-410 85-444 (482)
32 PRK11057 ATP-dependent DNA hel 100.0 3E-42 6.6E-47 392.2 35.7 318 73-411 7-344 (607)
33 KOG0326 ATP-dependent RNA heli 100.0 9E-44 2E-48 351.0 16.1 322 77-413 95-432 (459)
34 KOG0341 DEAD-box protein abstr 100.0 7.9E-44 1.7E-48 358.7 14.6 321 77-411 180-529 (610)
35 KOG0348 ATP-dependent RNA heli 100.0 4.2E-42 9.1E-47 358.9 26.6 327 73-411 141-555 (708)
36 TIGR01389 recQ ATP-dependent D 100.0 2.5E-41 5.4E-46 385.2 35.1 311 80-411 3-332 (591)
37 PRK02362 ski2-like helicase; P 100.0 4.3E-42 9.2E-47 400.1 28.3 407 77-509 11-514 (737)
38 KOG0339 ATP-dependent RNA heli 100.0 2.6E-41 5.6E-46 350.6 27.2 332 78-426 234-589 (731)
39 PRK13767 ATP-dependent helicas 100.0 8.4E-40 1.8E-44 384.7 36.4 315 78-405 22-395 (876)
40 PRK11664 ATP-dependent RNA hel 100.0 2.9E-41 6.2E-46 390.7 23.4 387 97-509 9-430 (812)
41 PRK01172 ski2-like helicase; P 100.0 2.2E-40 4.8E-45 382.9 28.2 406 73-509 6-492 (674)
42 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3.8E-40 8.3E-45 380.5 30.0 376 111-509 17-427 (819)
43 KOG0347 RNA helicase [RNA proc 100.0 4.4E-41 9.5E-46 352.2 18.2 313 76-412 190-572 (731)
44 KOG0332 ATP-dependent RNA heli 100.0 3.1E-40 6.8E-45 332.3 22.9 319 78-411 101-444 (477)
45 KOG0346 RNA helicase [RNA proc 100.0 1.1E-39 2.5E-44 334.0 25.0 329 70-412 21-412 (569)
46 PRK00254 ski2-like helicase; P 100.0 2.8E-39 6.1E-44 375.6 29.4 315 77-411 11-389 (720)
47 PRK05580 primosome assembly pr 100.0 2.3E-38 5E-43 363.0 35.9 314 85-408 140-547 (679)
48 KOG0350 DEAD-box ATP-dependent 100.0 1.8E-39 3.8E-44 337.4 23.0 329 80-412 150-542 (620)
49 KOG0344 ATP-dependent RNA heli 100.0 1E-39 2.3E-44 346.9 21.2 355 78-452 147-530 (593)
50 KOG0334 RNA helicase [RNA proc 100.0 1.9E-38 4.1E-43 356.5 25.3 366 31-412 316-722 (997)
51 KOG4284 DEAD box protein [Tran 100.0 1.5E-38 3.3E-43 337.6 21.6 319 78-411 36-380 (980)
52 PHA02653 RNA helicase NPH-II; 100.0 5.5E-37 1.2E-41 346.8 33.8 309 89-411 160-515 (675)
53 TIGR00595 priA primosomal prot 100.0 2.3E-37 4.9E-42 343.1 29.7 290 115-410 1-382 (505)
54 COG0514 RecQ Superfamily II DN 100.0 2.7E-37 5.8E-42 338.1 29.5 313 80-412 7-339 (590)
55 COG1201 Lhr Lhr-like helicases 100.0 7.2E-37 1.6E-41 345.8 31.7 317 78-409 12-361 (814)
56 KOG0327 Translation initiation 100.0 3.2E-37 6.9E-42 313.6 21.1 322 77-412 36-372 (397)
57 KOG0337 ATP-dependent RNA heli 100.0 2.5E-37 5.4E-42 315.6 18.9 328 71-413 24-371 (529)
58 PHA02558 uvsW UvsW helicase; P 100.0 2.7E-35 5.8E-40 328.6 32.7 303 87-411 112-456 (501)
59 TIGR02621 cas3_GSU0051 CRISPR- 100.0 8.6E-36 1.9E-40 338.8 29.0 311 79-408 5-389 (844)
60 COG1111 MPH1 ERCC4-like helica 100.0 6.5E-35 1.4E-39 306.2 29.9 309 88-412 14-483 (542)
61 PRK09751 putative ATP-dependen 100.0 3.2E-35 7E-40 351.3 30.4 287 116-408 1-383 (1490)
62 COG1204 Superfamily II helicas 100.0 1.1E-34 2.3E-39 332.2 27.4 315 78-411 20-409 (766)
63 TIGR01587 cas3_core CRISPR-ass 100.0 1.3E-33 2.7E-38 303.4 30.7 290 113-410 1-336 (358)
64 KOG0923 mRNA splicing factor A 100.0 7.2E-35 1.6E-39 310.9 19.4 379 111-511 280-700 (902)
65 PRK11131 ATP-dependent RNA hel 100.0 1.1E-34 2.4E-39 341.2 22.8 374 111-509 89-507 (1294)
66 PRK09401 reverse gyrase; Revie 100.0 1.3E-33 2.8E-38 336.8 32.0 300 78-397 69-431 (1176)
67 KOG0922 DEAH-box RNA helicase 100.0 2.5E-34 5.4E-39 310.5 22.2 377 111-509 66-482 (674)
68 COG1202 Superfamily II helicas 100.0 2.7E-34 5.7E-39 302.6 21.2 321 78-413 205-556 (830)
69 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.8E-34 8.2E-39 337.9 24.5 375 111-509 82-498 (1283)
70 PRK14701 reverse gyrase; Provi 100.0 4.2E-33 9.2E-38 338.7 32.9 312 78-406 68-452 (1638)
71 PRK12898 secA preprotein trans 100.0 4.6E-32 9.9E-37 302.4 34.7 309 81-411 95-587 (656)
72 TIGR00603 rad25 DNA repair hel 100.0 9.2E-33 2E-37 311.3 29.1 316 87-427 253-624 (732)
73 COG1198 PriA Primosomal protei 100.0 3.5E-32 7.5E-37 306.0 29.7 316 86-410 195-604 (730)
74 TIGR00963 secA preprotein tran 100.0 5.7E-32 1.2E-36 303.0 30.6 312 80-412 47-519 (745)
75 PRK13766 Hef nuclease; Provisi 100.0 4.8E-31 1E-35 310.4 35.9 309 86-412 12-481 (773)
76 COG1643 HrpA HrpA-like helicas 100.0 2E-32 4.4E-37 312.0 23.0 376 111-509 65-479 (845)
77 TIGR01054 rgy reverse gyrase. 100.0 2.1E-31 4.5E-36 318.4 30.6 286 78-382 67-410 (1171)
78 PRK09200 preprotein translocas 100.0 4.6E-31 9.9E-36 300.3 30.0 309 80-412 69-543 (790)
79 TIGR03158 cas3_cyano CRISPR-as 100.0 7E-31 1.5E-35 280.9 29.8 284 93-395 1-357 (357)
80 KOG0952 DNA/RNA helicase MER3/ 100.0 1.1E-30 2.3E-35 291.5 27.4 307 89-411 110-492 (1230)
81 TIGR03714 secA2 accessory Sec 100.0 6.9E-30 1.5E-34 288.1 34.2 307 89-412 68-539 (762)
82 KOG0925 mRNA splicing factor A 100.0 5.5E-31 1.2E-35 272.9 22.3 370 111-509 62-479 (699)
83 KOG0924 mRNA splicing factor A 100.0 6.3E-31 1.4E-35 281.0 20.9 374 111-508 371-788 (1042)
84 KOG0352 ATP-dependent DNA heli 100.0 9.2E-31 2E-35 267.5 21.1 318 78-412 7-364 (641)
85 KOG0351 ATP-dependent DNA heli 100.0 1E-30 2.2E-35 301.5 24.1 316 78-412 252-594 (941)
86 COG1205 Distinct helicase fami 100.0 6.8E-30 1.5E-34 296.6 31.0 323 78-411 59-423 (851)
87 KOG0329 ATP-dependent RNA heli 100.0 4.7E-32 1E-36 260.7 10.3 290 71-411 45-356 (387)
88 COG4098 comFA Superfamily II D 100.0 2.8E-29 6.1E-34 251.3 29.2 315 88-429 96-432 (441)
89 PRK09694 helicase Cas3; Provis 100.0 4.2E-28 9E-33 280.8 35.0 302 87-399 284-664 (878)
90 COG1061 SSL2 DNA or RNA helica 100.0 1.5E-28 3.3E-33 269.4 28.8 291 84-397 31-376 (442)
91 KOG0354 DEAD-box like helicase 100.0 7.9E-29 1.7E-33 274.4 26.4 307 85-410 58-529 (746)
92 PRK04914 ATP-dependent helicas 100.0 6.7E-27 1.4E-31 272.4 31.3 308 88-410 151-603 (956)
93 KOG0353 ATP-dependent DNA heli 100.0 7.1E-27 1.5E-31 235.6 23.6 323 72-412 75-469 (695)
94 KOG0926 DEAH-box RNA helicase 99.9 5.7E-27 1.2E-31 254.6 18.1 384 112-515 272-802 (1172)
95 PRK12904 preprotein translocas 99.9 4.3E-25 9.3E-30 250.9 33.6 307 81-411 73-574 (830)
96 KOG0951 RNA helicase BRR2, DEA 99.9 2.9E-26 6.3E-31 258.7 23.2 305 89-409 309-701 (1674)
97 PRK13104 secA preprotein trans 99.9 6.1E-25 1.3E-29 249.8 33.9 318 84-424 77-602 (896)
98 PRK12906 secA preprotein trans 99.9 5E-25 1.1E-29 249.4 30.5 309 80-411 71-554 (796)
99 PRK11448 hsdR type I restricti 99.9 2.1E-25 4.6E-30 265.1 28.4 296 88-398 412-801 (1123)
100 KOG0947 Cytoplasmic exosomal R 99.9 9.9E-25 2.2E-29 241.4 23.8 306 78-410 286-723 (1248)
101 COG4581 Superfamily II RNA hel 99.9 4.9E-25 1.1E-29 253.1 20.1 311 80-411 110-538 (1041)
102 KOG0349 Putative DEAD-box RNA 99.9 2.9E-25 6.2E-30 227.4 15.0 262 142-409 289-614 (725)
103 KOG0948 Nuclear exosomal RNA h 99.9 2.4E-25 5.3E-30 240.9 14.8 302 83-410 123-539 (1041)
104 KOG0920 ATP-dependent RNA heli 99.9 1.3E-24 2.8E-29 247.3 20.7 375 111-506 188-635 (924)
105 PRK14873 primosome assembly pr 99.9 4.1E-23 8.9E-28 234.2 29.4 278 114-410 163-539 (665)
106 TIGR00631 uvrb excinuclease AB 99.9 1.2E-21 2.7E-26 222.7 35.3 122 286-411 428-554 (655)
107 PRK13107 preprotein translocas 99.9 3.4E-22 7.4E-27 226.8 30.0 306 83-411 76-592 (908)
108 PLN03142 Probable chromatin-re 99.9 1.7E-22 3.8E-27 236.3 28.3 311 89-412 169-601 (1033)
109 PRK12899 secA preprotein trans 99.9 2.8E-22 6.1E-27 227.7 27.5 122 89-224 92-226 (970)
110 COG1203 CRISPR-associated heli 99.9 1.1E-22 2.4E-27 235.8 23.7 313 89-412 195-552 (733)
111 KOG0950 DNA polymerase theta/e 99.9 2.9E-22 6.3E-27 223.8 17.3 310 83-411 217-612 (1008)
112 PRK05298 excinuclease ABC subu 99.9 3.1E-20 6.6E-25 212.7 33.5 122 286-410 432-557 (652)
113 cd00268 DEADc DEAD-box helicas 99.9 5.5E-21 1.2E-25 188.6 21.8 182 73-266 4-201 (203)
114 COG0556 UvrB Helicase subunit 99.9 1.3E-20 2.8E-25 198.9 24.9 166 239-410 386-557 (663)
115 PF00270 DEAD: DEAD/DEAH box h 99.9 9.3E-21 2E-25 180.8 18.4 149 91-250 1-163 (169)
116 TIGR00348 hsdR type I site-spe 99.9 1.9E-20 4.2E-25 215.1 24.2 296 89-397 238-634 (667)
117 PRK13103 secA preprotein trans 99.9 3.4E-19 7.5E-24 202.6 30.7 305 84-412 77-593 (913)
118 PRK12900 secA preprotein trans 99.8 2.3E-19 4.9E-24 204.7 27.3 119 289-412 587-713 (1025)
119 PRK12326 preprotein translocas 99.8 1.3E-18 2.7E-23 193.7 32.5 308 80-411 69-548 (764)
120 COG4096 HsdR Type I site-speci 99.8 6.7E-20 1.4E-24 203.3 21.8 290 88-397 164-525 (875)
121 TIGR01407 dinG_rel DnaQ family 99.8 2.9E-18 6.3E-23 202.9 34.5 318 86-410 242-814 (850)
122 KOG0385 Chromatin remodeling c 99.8 1.6E-18 3.5E-23 189.2 28.1 312 88-412 166-601 (971)
123 COG1110 Reverse gyrase [DNA re 99.8 1.1E-18 2.3E-23 196.3 27.3 283 78-381 71-417 (1187)
124 KOG0384 Chromodomain-helicase 99.8 1.4E-18 3E-23 197.9 24.9 360 38-414 314-815 (1373)
125 KOG1123 RNA polymerase II tran 99.8 9E-19 1.9E-23 183.0 15.0 312 89-424 302-667 (776)
126 PRK07246 bifunctional ATP-depe 99.8 1.4E-16 2.9E-21 186.5 32.3 313 87-410 243-783 (820)
127 KOG0387 Transcription-coupled 99.8 9.8E-17 2.1E-21 176.3 24.2 315 89-413 205-661 (923)
128 CHL00122 secA preprotein trans 99.7 6.4E-16 1.4E-20 175.5 27.5 270 80-369 67-491 (870)
129 PRK12903 secA preprotein trans 99.7 1.3E-15 2.8E-20 171.9 28.7 307 81-411 70-540 (925)
130 smart00487 DEXDc DEAD-like hel 99.7 1.7E-16 3.8E-21 153.8 19.1 174 85-268 4-189 (201)
131 COG4889 Predicted helicase [Ge 99.7 6.5E-16 1.4E-20 170.2 25.0 350 72-429 144-618 (1518)
132 KOG0390 DNA repair protein, SN 99.7 1.6E-15 3.5E-20 170.8 27.2 319 89-412 238-709 (776)
133 KOG0949 Predicted helicase, DE 99.7 1.3E-16 2.7E-21 178.0 17.1 150 88-251 510-673 (1330)
134 PRK12902 secA preprotein trans 99.7 6.9E-15 1.5E-19 166.8 31.1 127 82-224 78-216 (939)
135 PF03461 TRCF: TRCF domain; I 99.7 4.6E-17 9.9E-22 141.6 9.4 90 493-584 1-90 (101)
136 PF04851 ResIII: Type III rest 99.7 7E-17 1.5E-21 155.8 10.8 154 88-250 2-183 (184)
137 PRK08074 bifunctional ATP-depe 99.7 4.3E-14 9.3E-19 168.4 33.2 87 87-178 255-346 (928)
138 cd00079 HELICc Helicase superf 99.7 4.4E-16 9.6E-21 141.6 11.7 116 288-406 16-131 (131)
139 KOG0392 SNF2 family DNA-depend 99.7 6.9E-15 1.5E-19 167.5 21.5 318 89-427 975-1466(1549)
140 KOG0389 SNF2 family DNA-depend 99.6 1.5E-14 3.3E-19 159.1 22.2 312 88-412 398-890 (941)
141 PF00271 Helicase_C: Helicase 99.6 8.3E-16 1.8E-20 127.6 8.5 77 319-398 2-78 (78)
142 TIGR03117 cas_csf4 CRISPR-asso 99.6 7.1E-13 1.5E-17 149.3 33.0 81 94-178 2-87 (636)
143 cd00046 DEXDc DEAD-like helica 99.6 1.3E-14 2.9E-19 132.3 14.4 131 113-249 2-144 (144)
144 KOG0951 RNA helicase BRR2, DEA 99.6 6.7E-14 1.5E-18 159.8 20.2 300 89-410 1143-1494(1674)
145 KOG0953 Mitochondrial RNA heli 99.6 4.6E-14 1E-18 150.1 16.3 264 112-410 192-477 (700)
146 PRK12901 secA preprotein trans 99.5 1.1E-12 2.4E-17 150.5 26.0 132 288-424 616-756 (1112)
147 PRK11747 dinG ATP-dependent DN 99.5 2.1E-11 4.6E-16 141.2 35.2 71 87-157 23-96 (697)
148 KOG4150 Predicted ATP-dependen 99.5 2E-13 4.4E-18 144.9 14.0 314 87-410 284-640 (1034)
149 smart00490 HELICc helicase sup 99.5 1.1E-13 2.3E-18 115.0 9.4 81 315-398 2-82 (82)
150 KOG0386 Chromatin remodeling c 99.5 6.3E-13 1.4E-17 149.7 16.9 305 89-405 394-831 (1157)
151 KOG1000 Chromatin remodeling p 99.5 3.5E-12 7.5E-17 134.2 19.1 300 89-410 198-603 (689)
152 TIGR02562 cas3_yersinia CRISPR 99.4 3.1E-11 6.8E-16 139.4 26.5 317 78-399 397-881 (1110)
153 COG1199 DinG Rad3-related DNA 99.4 2.8E-11 6.1E-16 140.4 24.2 73 86-161 12-85 (654)
154 TIGR00604 rad3 DNA repair heli 99.3 4.5E-10 9.6E-15 131.1 28.7 75 84-161 4-82 (705)
155 PF00176 SNF2_N: SNF2 family N 99.3 3.1E-11 6.7E-16 125.9 14.7 156 93-255 1-178 (299)
156 KOG4439 RNA polymerase II tran 99.3 1.3E-10 2.9E-15 126.9 18.2 157 87-253 323-505 (901)
157 PF02399 Herpes_ori_bp: Origin 99.2 1.1E-09 2.4E-14 123.9 24.4 277 111-408 49-386 (824)
158 COG0653 SecA Preprotein transl 99.2 3.7E-09 8.1E-14 120.4 24.5 302 85-410 76-545 (822)
159 PF07652 Flavi_DEAD: Flaviviru 99.2 1.2E-10 2.6E-15 106.0 10.0 127 111-253 4-140 (148)
160 KOG0388 SNF2 family DNA-depend 99.2 5.3E-10 1.2E-14 121.9 16.6 158 89-257 567-741 (1185)
161 KOG0921 Dosage compensation co 99.2 6.4E-11 1.4E-15 132.0 9.2 370 112-506 394-864 (1282)
162 COG0553 HepA Superfamily II DN 99.1 3.2E-09 6.9E-14 127.2 22.8 316 86-411 335-823 (866)
163 COG0610 Type I site-specific r 99.1 4E-09 8.6E-14 125.7 20.4 286 110-407 272-650 (962)
164 KOG1002 Nucleotide excision re 99.1 5E-09 1.1E-13 110.6 17.8 108 301-411 639-750 (791)
165 smart00489 DEXDc3 DEAD-like he 99.1 2.1E-09 4.5E-14 111.9 14.7 75 85-162 4-84 (289)
166 smart00488 DEXDc2 DEAD-like he 99.1 2.1E-09 4.5E-14 111.9 14.7 75 85-162 4-84 (289)
167 KOG0391 SNF2 family DNA-depend 99.0 6E-09 1.3E-13 118.9 16.8 159 89-257 615-783 (1958)
168 KOG1015 Transcription regulato 98.9 9.7E-08 2.1E-12 107.5 21.8 119 291-410 1133-1277(1567)
169 PF07517 SecA_DEAD: SecA DEAD- 98.8 2.6E-07 5.6E-12 94.2 18.1 130 80-225 68-209 (266)
170 PF06862 DUF1253: Protein of u 98.6 1E-05 2.2E-10 87.7 24.7 268 139-411 37-416 (442)
171 PRK15483 type III restriction- 98.5 2.1E-06 4.5E-11 100.4 17.2 163 88-251 5-240 (986)
172 PF13086 AAA_11: AAA domain; P 98.4 1.2E-06 2.7E-11 87.4 10.1 66 89-161 1-75 (236)
173 PF13604 AAA_30: AAA domain; P 98.3 1.5E-05 3.3E-10 78.2 13.6 125 89-245 1-127 (196)
174 PF02562 PhoH: PhoH-like prote 98.1 8.1E-06 1.8E-10 80.1 7.4 135 89-245 4-152 (205)
175 KOG0952 DNA/RNA helicase MER3/ 98.1 9.6E-06 2.1E-10 93.3 8.3 247 89-354 927-1207(1230)
176 KOG1803 DNA helicase [Replicat 98.0 2.8E-05 6E-10 85.3 11.1 72 83-160 179-250 (649)
177 PRK10536 hypothetical protein; 98.0 0.00026 5.6E-09 71.6 17.2 144 81-244 51-208 (262)
178 TIGR00376 DNA helicase, putati 98.0 6.4E-05 1.4E-09 86.6 14.3 68 88-161 156-223 (637)
179 TIGR01448 recD_rel helicase, p 97.9 0.00017 3.7E-09 84.3 14.7 135 78-246 312-450 (720)
180 PF09848 DUF2075: Uncharacteri 97.9 4.1E-05 8.9E-10 82.3 8.5 50 113-162 3-54 (352)
181 PF12340 DUF3638: Protein of u 97.7 0.00023 5.1E-09 70.6 10.9 119 82-206 16-142 (229)
182 KOG1802 RNA helicase nonsense 97.7 0.00025 5.5E-09 78.3 11.5 87 78-176 399-486 (935)
183 PF13245 AAA_19: Part of AAA d 97.7 0.00012 2.6E-09 60.3 6.9 48 112-159 11-62 (76)
184 PF13307 Helicase_C_2: Helicas 97.7 5.6E-05 1.2E-09 72.3 5.7 100 299-400 8-140 (167)
185 PF13872 AAA_34: P-loop contai 97.7 0.00017 3.8E-09 74.1 9.4 156 89-255 37-226 (303)
186 KOG2340 Uncharacterized conser 97.6 0.00089 1.9E-08 72.5 14.2 109 301-412 553-670 (698)
187 PRK10875 recD exonuclease V su 97.6 0.0017 3.7E-08 74.3 17.6 144 77-246 138-299 (615)
188 KOG1016 Predicted DNA helicase 97.6 0.0017 3.6E-08 73.0 16.2 110 300-410 719-849 (1387)
189 TIGR01447 recD exodeoxyribonuc 97.6 0.0017 3.6E-08 74.1 16.5 129 91-245 147-292 (586)
190 PF13401 AAA_22: AAA domain; P 97.6 0.00069 1.5E-08 61.3 11.0 112 111-249 4-125 (131)
191 TIGR02768 TraA_Ti Ti-type conj 97.4 0.003 6.4E-08 74.4 15.9 123 86-246 349-474 (744)
192 PF05496 RuvB_N: Holliday junc 97.3 0.00063 1.4E-08 67.2 7.9 84 213-296 101-191 (233)
193 PRK04296 thymidine kinase; Pro 97.3 0.00058 1.2E-08 66.7 7.0 36 112-147 3-38 (190)
194 PF00580 UvrD-helicase: UvrD/R 97.3 0.00082 1.8E-08 70.3 8.2 67 90-165 1-71 (315)
195 PF05970 PIF1: PIF1-like helic 97.2 0.00099 2.1E-08 71.9 8.8 74 89-163 1-76 (364)
196 PF00448 SRP54: SRP54-type pro 97.2 0.0061 1.3E-07 59.8 13.2 124 112-258 2-134 (196)
197 TIGR03015 pepcterm_ATPase puta 97.2 0.0036 7.9E-08 64.3 12.2 43 87-131 21-63 (269)
198 PRK12723 flagellar biosynthesi 97.2 0.007 1.5E-07 65.5 14.7 123 110-260 173-308 (388)
199 PRK08181 transposase; Validate 97.2 0.0038 8.3E-08 64.2 11.9 79 73-155 71-149 (269)
200 cd00009 AAA The AAA+ (ATPases 97.2 0.0053 1.1E-07 55.7 11.7 53 95-148 4-56 (151)
201 COG3421 Uncharacterized protei 97.1 0.0063 1.4E-07 67.1 13.2 123 117-250 3-166 (812)
202 TIGR02760 TraI_TIGR conjugativ 97.1 0.025 5.4E-07 73.0 20.4 235 87-351 427-685 (1960)
203 PRK13889 conjugal transfer rel 97.1 0.0078 1.7E-07 72.2 14.9 124 86-247 343-469 (988)
204 COG3587 Restriction endonuclea 97.1 0.0049 1.1E-07 70.5 12.4 137 110-251 73-244 (985)
205 PRK06526 transposase; Provisio 97.1 0.0044 9.6E-08 63.3 11.1 38 110-147 97-134 (254)
206 PRK07952 DNA replication prote 97.1 0.019 4.1E-07 58.3 15.5 56 90-145 77-133 (244)
207 KOG0344 ATP-dependent RNA heli 97.0 0.0041 8.8E-08 68.5 10.8 113 113-230 359-473 (593)
208 PRK13826 Dtr system oriT relax 97.0 0.02 4.3E-07 69.2 17.2 122 87-246 379-503 (1102)
209 PRK14974 cell division protein 96.9 0.04 8.7E-07 58.5 17.2 126 110-257 139-272 (336)
210 KOG1805 DNA replication helica 96.9 0.0054 1.2E-07 71.0 11.1 126 87-225 667-808 (1100)
211 KOG1132 Helicase of the DEAD s 96.9 0.0054 1.2E-07 70.4 10.9 50 81-133 13-62 (945)
212 PRK11889 flhF flagellar biosyn 96.9 0.026 5.5E-07 60.7 15.2 123 111-258 241-371 (436)
213 PRK10689 transcription-repair 96.9 0.0071 1.5E-07 74.1 12.4 95 131-229 801-895 (1147)
214 COG2256 MGS1 ATPase related to 96.9 0.015 3.3E-07 61.8 13.0 35 215-249 106-140 (436)
215 TIGR00580 mfd transcription-re 96.8 0.0076 1.6E-07 72.2 12.0 95 131-229 652-746 (926)
216 COG1197 Mfd Transcription-repa 96.8 0.0073 1.6E-07 71.9 11.2 100 132-235 796-895 (1139)
217 PRK14873 primosome assembly pr 96.8 0.01 2.2E-07 68.7 12.2 93 285-378 173-265 (665)
218 PRK08084 DNA replication initi 96.8 0.011 2.4E-07 59.8 11.1 53 94-147 29-81 (235)
219 COG1200 RecG RecG-like helicas 96.8 0.0097 2.1E-07 67.1 11.3 115 132-250 466-592 (677)
220 smart00382 AAA ATPases associa 96.7 0.0025 5.5E-08 57.2 5.5 42 111-152 2-43 (148)
221 PRK14962 DNA polymerase III su 96.7 0.034 7.4E-07 61.9 15.4 40 94-133 19-58 (472)
222 PRK05703 flhF flagellar biosyn 96.7 0.11 2.5E-06 57.0 19.1 123 111-261 221-354 (424)
223 PRK10917 ATP-dependent DNA hel 96.7 0.008 1.7E-07 70.3 10.6 99 292-390 302-403 (681)
224 KOG1001 Helicase-like transcri 96.7 0.012 2.6E-07 67.8 11.8 137 111-258 152-301 (674)
225 PRK06645 DNA polymerase III su 96.7 0.041 8.8E-07 61.7 15.5 42 93-134 25-66 (507)
226 TIGR00643 recG ATP-dependent D 96.6 0.0093 2E-07 69.1 10.5 97 291-387 275-374 (630)
227 PRK14956 DNA polymerase III su 96.6 0.011 2.3E-07 65.3 9.8 42 93-134 22-63 (484)
228 TIGR00595 priA primosomal prot 96.5 0.015 3.1E-07 65.6 11.0 89 289-379 14-102 (505)
229 PRK11054 helD DNA helicase IV; 96.5 0.0093 2E-07 69.4 9.6 80 87-176 194-277 (684)
230 PHA03333 putative ATPase subun 96.5 0.083 1.8E-06 60.2 16.5 168 86-260 166-343 (752)
231 PRK08691 DNA polymerase III su 96.5 0.02 4.4E-07 65.7 11.8 41 94-134 21-61 (709)
232 PRK05580 primosome assembly pr 96.5 0.02 4.2E-07 66.9 12.0 89 290-380 180-268 (679)
233 PRK14964 DNA polymerase III su 96.4 0.047 1E-06 60.8 13.7 40 94-133 18-57 (491)
234 PRK13342 recombination factor 96.4 0.023 4.9E-07 62.5 11.2 37 213-249 92-128 (413)
235 COG1198 PriA Primosomal protei 96.4 0.022 4.7E-07 66.0 11.2 89 286-376 231-319 (730)
236 PRK07994 DNA polymerase III su 96.4 0.077 1.7E-06 61.0 15.5 41 94-134 21-61 (647)
237 PRK10919 ATP-dependent DNA hel 96.4 0.0079 1.7E-07 70.2 7.8 79 89-176 2-86 (672)
238 PRK14958 DNA polymerase III su 96.3 0.032 6.9E-07 62.8 12.2 42 94-135 21-62 (509)
239 TIGR00631 uvrb excinuclease AB 96.3 0.025 5.4E-07 65.5 11.6 87 135-227 438-524 (655)
240 PRK09111 DNA polymerase III su 96.3 0.075 1.6E-06 60.9 15.2 42 94-135 29-70 (598)
241 PRK08903 DnaA regulatory inact 96.3 0.072 1.6E-06 53.3 13.5 37 110-146 41-77 (227)
242 PRK14722 flhF flagellar biosyn 96.3 0.065 1.4E-06 57.7 13.6 120 110-257 136-265 (374)
243 COG1419 FlhF Flagellar GTP-bin 96.3 0.13 2.9E-06 55.2 15.7 124 111-262 203-336 (407)
244 PRK07003 DNA polymerase III su 96.3 0.074 1.6E-06 61.6 14.6 41 94-134 21-61 (830)
245 PRK00771 signal recognition pa 96.3 0.07 1.5E-06 58.8 14.0 52 110-161 94-147 (437)
246 TIGR00064 ftsY signal recognit 96.2 0.043 9.4E-07 56.7 11.7 52 111-162 72-125 (272)
247 PRK10416 signal recognition pa 96.2 0.34 7.5E-06 51.2 18.6 52 110-161 113-166 (318)
248 PRK14712 conjugal transfer nic 96.2 0.028 6E-07 70.2 11.4 135 81-248 827-967 (1623)
249 smart00492 HELICc3 helicase su 96.2 0.046 1E-06 50.6 10.2 50 331-380 26-78 (141)
250 PRK13341 recombination factor 96.1 0.04 8.6E-07 64.5 12.0 38 212-249 108-145 (725)
251 PRK14960 DNA polymerase III su 96.1 0.041 8.8E-07 62.8 11.6 41 94-134 20-60 (702)
252 PRK14957 DNA polymerase III su 96.1 0.043 9.3E-07 62.0 11.6 41 93-133 20-60 (546)
253 PHA02533 17 large terminase pr 96.1 0.11 2.4E-06 58.8 14.9 123 87-226 57-182 (534)
254 PTZ00112 origin recognition co 96.1 0.071 1.5E-06 62.3 13.3 42 90-131 759-801 (1164)
255 PRK08727 hypothetical protein; 96.1 0.044 9.5E-07 55.3 10.6 36 111-146 41-76 (233)
256 PRK14963 DNA polymerase III su 96.1 0.13 2.9E-06 57.8 15.3 41 94-134 19-59 (504)
257 PRK07764 DNA polymerase III su 96.0 0.14 3E-06 60.9 15.9 42 94-135 20-61 (824)
258 TIGR03420 DnaA_homol_Hda DnaA 96.0 0.068 1.5E-06 53.2 11.6 51 93-144 21-71 (226)
259 PRK14961 DNA polymerase III su 96.0 0.05 1.1E-06 58.7 11.3 41 93-133 20-60 (363)
260 PRK14949 DNA polymerase III su 96.0 0.15 3.4E-06 60.1 15.7 39 94-133 21-60 (944)
261 COG1435 Tdk Thymidine kinase [ 96.0 0.035 7.7E-07 53.6 8.8 100 112-239 5-108 (201)
262 PRK14955 DNA polymerase III su 96.0 0.053 1.2E-06 59.3 11.5 43 93-135 20-62 (397)
263 smart00491 HELICc2 helicase su 96.0 0.044 9.5E-07 50.9 9.2 66 313-380 4-79 (142)
264 TIGR01425 SRP54_euk signal rec 96.0 0.11 2.4E-06 56.8 13.7 51 111-161 100-152 (429)
265 TIGR02881 spore_V_K stage V sp 95.9 0.15 3.3E-06 52.3 14.1 22 111-132 42-63 (261)
266 PRK14952 DNA polymerase III su 95.9 0.15 3.3E-06 58.2 15.0 41 94-134 18-58 (584)
267 PRK06893 DNA replication initi 95.9 0.037 8.1E-07 55.7 9.2 35 113-147 41-75 (229)
268 PRK12323 DNA polymerase III su 95.9 0.059 1.3E-06 61.4 11.5 42 94-135 21-62 (700)
269 PRK09112 DNA polymerase III su 95.9 0.098 2.1E-06 56.1 12.8 44 94-137 28-71 (351)
270 cd01124 KaiC KaiC is a circadi 95.9 0.042 9.1E-07 52.9 9.2 47 114-161 2-48 (187)
271 TIGR01074 rep ATP-dependent DN 95.9 0.02 4.3E-07 67.0 8.1 79 89-176 1-85 (664)
272 cd01120 RecA-like_NTPases RecA 95.9 0.051 1.1E-06 50.5 9.4 40 114-153 2-41 (165)
273 PRK11773 uvrD DNA-dependent he 95.9 0.02 4.4E-07 67.4 8.1 79 89-176 9-92 (721)
274 COG1474 CDC6 Cdc6-related prot 95.8 0.44 9.6E-06 51.4 17.5 45 88-132 19-63 (366)
275 PTZ00293 thymidine kinase; Pro 95.8 0.053 1.2E-06 53.5 9.6 39 111-149 4-42 (211)
276 TIGR01075 uvrD DNA helicase II 95.8 0.019 4.1E-07 67.7 7.7 79 89-176 4-87 (715)
277 COG2805 PilT Tfp pilus assembl 95.8 0.077 1.7E-06 54.5 10.8 43 94-138 109-151 (353)
278 KOG2028 ATPase related to the 95.8 0.036 7.7E-07 58.1 8.4 107 107-255 158-264 (554)
279 COG1484 DnaC DNA replication p 95.8 0.079 1.7E-06 54.2 11.0 71 89-160 83-153 (254)
280 PRK05896 DNA polymerase III su 95.8 0.052 1.1E-06 61.7 10.4 43 93-135 20-62 (605)
281 TIGR00635 ruvB Holliday juncti 95.8 0.11 2.3E-06 54.5 12.4 21 110-130 29-49 (305)
282 PF00265 TK: Thymidine kinase; 95.8 0.065 1.4E-06 51.6 9.7 36 114-149 4-39 (176)
283 PRK07133 DNA polymerase III su 95.7 0.25 5.4E-06 57.4 15.9 40 94-133 23-62 (725)
284 PRK12726 flagellar biosynthesi 95.7 0.42 9.2E-06 51.4 16.3 37 110-146 205-241 (407)
285 TIGR02760 TraI_TIGR conjugativ 95.7 0.09 2E-06 68.1 13.4 124 87-245 1017-1146(1960)
286 COG1875 NYN ribonuclease and A 95.7 0.036 7.7E-07 58.3 8.0 64 84-152 222-289 (436)
287 COG0552 FtsY Signal recognitio 95.7 0.23 4.9E-06 52.0 13.8 55 109-163 137-193 (340)
288 TIGR00596 rad1 DNA repair prot 95.7 0.049 1.1E-06 64.3 10.1 52 357-412 431-516 (814)
289 PRK14951 DNA polymerase III su 95.6 0.2 4.3E-06 57.5 14.6 42 94-135 21-62 (618)
290 PRK13709 conjugal transfer nic 95.6 0.058 1.3E-06 68.3 11.1 134 81-247 959-1098(1747)
291 PF13177 DNA_pol3_delta2: DNA 95.6 0.12 2.6E-06 49.0 10.8 43 94-136 2-44 (162)
292 PRK00149 dnaA chromosomal repl 95.6 0.082 1.8E-06 58.8 11.3 42 112-154 149-192 (450)
293 PF05127 Helicase_RecD: Helica 95.6 0.0066 1.4E-07 58.2 2.1 122 115-249 1-123 (177)
294 PRK05707 DNA polymerase III su 95.6 0.12 2.5E-06 55.0 11.6 44 90-136 4-47 (328)
295 PRK00411 cdc6 cell division co 95.6 0.18 4E-06 54.8 13.6 42 91-132 35-76 (394)
296 PRK14950 DNA polymerase III su 95.6 0.11 2.4E-06 59.8 12.2 41 93-133 20-60 (585)
297 PF05876 Terminase_GpA: Phage 95.5 0.017 3.7E-07 65.7 5.6 127 89-225 16-146 (557)
298 PLN03025 replication factor C 95.5 0.11 2.3E-06 55.1 11.4 27 109-135 32-58 (319)
299 PRK12402 replication factor C 95.5 0.32 7E-06 51.5 15.1 40 94-134 20-59 (337)
300 PRK12727 flagellar biosynthesi 95.5 0.4 8.6E-06 53.7 15.8 118 110-255 349-475 (559)
301 PRK12377 putative replication 95.5 0.33 7.2E-06 49.4 14.2 65 91-158 80-147 (248)
302 PRK14959 DNA polymerase III su 95.5 0.26 5.7E-06 56.4 14.7 42 94-135 21-62 (624)
303 PRK14969 DNA polymerase III su 95.5 0.099 2.1E-06 59.2 11.3 40 94-133 21-60 (527)
304 PRK05563 DNA polymerase III su 95.5 0.11 2.3E-06 59.4 11.6 39 94-132 21-59 (559)
305 PRK08769 DNA polymerase III su 95.4 0.15 3.3E-06 53.8 11.9 50 89-138 4-53 (319)
306 COG4098 comFA Superfamily II D 95.4 0.098 2.1E-06 54.4 10.0 85 135-225 301-385 (441)
307 PRK14954 DNA polymerase III su 95.4 0.11 2.3E-06 59.9 11.3 42 93-134 20-61 (620)
308 PRK14965 DNA polymerase III su 95.4 0.13 2.8E-06 59.0 11.9 40 94-133 21-60 (576)
309 PRK06731 flhF flagellar biosyn 95.4 0.58 1.3E-05 48.3 15.5 121 111-257 75-204 (270)
310 TIGR00362 DnaA chromosomal rep 95.4 0.1 2.3E-06 57.1 10.8 55 91-146 115-173 (405)
311 PRK05642 DNA replication initi 95.4 0.11 2.3E-06 52.6 10.0 36 112-147 46-81 (234)
312 PRK06647 DNA polymerase III su 95.3 0.12 2.6E-06 58.9 11.5 41 94-134 21-61 (563)
313 COG3267 ExeA Type II secretory 95.3 0.15 3.3E-06 51.3 10.7 57 95-154 37-93 (269)
314 PRK05298 excinuclease ABC subu 95.3 0.16 3.4E-06 59.2 12.6 87 135-227 442-528 (652)
315 TIGR00959 ffh signal recogniti 95.3 0.13 2.8E-06 56.6 11.1 51 111-161 99-152 (428)
316 TIGR01073 pcrA ATP-dependent D 95.3 0.041 8.9E-07 65.0 7.8 79 89-176 4-87 (726)
317 PRK10867 signal recognition pa 95.2 0.12 2.7E-06 56.7 10.8 51 111-161 100-153 (433)
318 PRK07940 DNA polymerase III su 95.2 0.12 2.7E-06 56.2 10.7 24 111-134 36-59 (394)
319 PRK14953 DNA polymerase III su 95.2 0.18 3.9E-06 56.5 12.1 41 93-133 20-60 (486)
320 cd00561 CobA_CobO_BtuR ATP:cor 95.2 0.24 5.1E-06 46.8 11.0 130 114-254 5-143 (159)
321 TIGR02880 cbbX_cfxQ probable R 95.2 0.35 7.5E-06 50.4 13.4 21 111-131 58-78 (284)
322 PRK06871 DNA polymerase III su 95.1 0.1 2.2E-06 55.3 9.4 48 90-137 3-50 (325)
323 COG4626 Phage terminase-like p 95.1 0.31 6.8E-06 54.2 13.3 146 84-249 56-225 (546)
324 PRK12724 flagellar biosynthesi 95.1 0.25 5.4E-06 53.8 12.4 51 111-161 223-276 (432)
325 KOG0298 DEAD box-containing he 95.0 0.046 1E-06 65.2 6.9 134 109-252 372-553 (1394)
326 PRK04537 ATP-dependent RNA hel 95.0 0.16 3.4E-06 58.3 11.1 78 138-221 256-333 (572)
327 PRK14971 DNA polymerase III su 94.9 0.19 4.1E-06 58.0 11.7 40 94-133 22-61 (614)
328 COG1221 PspF Transcriptional r 94.9 0.17 3.6E-06 54.8 10.4 33 95-130 88-120 (403)
329 KOG1513 Nuclear helicase MOP-3 94.9 0.014 3E-07 66.1 2.3 155 89-249 264-454 (1300)
330 PRK08116 hypothetical protein; 94.9 0.96 2.1E-05 46.6 15.8 67 90-157 89-159 (268)
331 COG1444 Predicted P-loop ATPas 94.9 0.24 5.2E-06 57.4 12.1 145 88-249 210-356 (758)
332 TIGR02397 dnaX_nterm DNA polym 94.9 0.61 1.3E-05 49.9 14.9 40 93-132 18-57 (355)
333 PRK07471 DNA polymerase III su 94.9 0.44 9.6E-06 51.4 13.6 45 93-137 23-67 (365)
334 COG2255 RuvB Holliday junction 94.8 0.2 4.2E-06 51.2 9.9 73 211-296 101-193 (332)
335 TIGR03878 thermo_KaiC_2 KaiC d 94.8 0.094 2E-06 53.8 8.0 38 110-147 35-72 (259)
336 PRK14948 DNA polymerase III su 94.8 0.27 5.9E-06 56.7 12.3 43 93-135 20-62 (620)
337 PRK05986 cob(I)alamin adenolsy 94.8 0.15 3.3E-06 49.5 8.7 132 111-254 22-162 (191)
338 KOG0989 Replication factor C, 94.8 0.09 2E-06 54.1 7.4 42 92-134 39-80 (346)
339 PRK00080 ruvB Holliday junctio 94.8 0.27 5.9E-06 52.2 11.6 24 109-132 49-72 (328)
340 PHA02544 44 clamp loader, smal 94.7 0.23 4.9E-06 52.3 10.9 20 111-130 43-62 (316)
341 TIGR02928 orc1/cdc6 family rep 94.7 0.18 3.9E-06 54.2 10.3 41 90-130 19-59 (365)
342 PF00308 Bac_DnaA: Bacterial d 94.7 0.31 6.7E-06 48.7 11.1 41 211-251 95-142 (219)
343 CHL00181 cbbX CbbX; Provisiona 94.7 0.68 1.5E-05 48.2 14.1 23 111-133 59-81 (287)
344 cd00079 HELICc Helicase superf 94.7 0.4 8.6E-06 42.7 10.9 80 138-223 27-106 (131)
345 COG0556 UvrB Helicase subunit 94.6 0.21 4.5E-06 55.0 10.2 87 135-227 442-528 (663)
346 PRK08533 flagellar accessory p 94.6 0.26 5.7E-06 49.6 10.5 50 110-160 23-72 (230)
347 TIGR02785 addA_Gpos recombinat 94.6 0.094 2E-06 65.5 8.7 68 89-165 1-71 (1232)
348 TIGR00614 recQ_fam ATP-depende 94.6 0.22 4.7E-06 55.8 10.9 79 137-221 224-302 (470)
349 PTZ00110 helicase; Provisional 94.6 0.21 4.5E-06 57.0 10.9 85 129-219 366-451 (545)
350 PF01695 IstB_IS21: IstB-like 94.6 0.095 2.1E-06 50.6 7.0 45 109-154 45-89 (178)
351 cd01122 GP4d_helicase GP4d_hel 94.6 0.24 5.3E-06 50.9 10.5 52 110-162 29-81 (271)
352 PRK08451 DNA polymerase III su 94.6 0.29 6.3E-06 55.2 11.6 41 94-134 19-59 (535)
353 PRK07993 DNA polymerase III su 94.5 0.35 7.6E-06 51.5 11.7 48 89-136 2-49 (334)
354 PRK04837 ATP-dependent RNA hel 94.5 0.14 3E-06 56.5 8.9 77 139-221 255-331 (423)
355 PRK14088 dnaA chromosomal repl 94.4 0.64 1.4E-05 51.5 13.9 57 91-147 110-168 (440)
356 cd00983 recA RecA is a bacter 94.4 0.13 2.8E-06 54.4 7.9 58 95-155 40-99 (325)
357 PRK12422 chromosomal replicati 94.4 0.3 6.4E-06 54.2 11.1 36 112-147 142-177 (445)
358 PRK04328 hypothetical protein; 94.4 0.21 4.6E-06 50.9 9.3 52 109-161 21-72 (249)
359 TIGR03499 FlhF flagellar biosy 94.4 0.26 5.7E-06 51.2 10.1 37 110-146 193-231 (282)
360 KOG1133 Helicase of the DEAD s 94.4 0.066 1.4E-06 60.3 5.8 49 85-136 11-59 (821)
361 PRK14970 DNA polymerase III su 94.3 0.4 8.7E-06 51.7 11.9 39 93-131 21-59 (367)
362 PRK10590 ATP-dependent RNA hel 94.3 0.24 5.1E-06 55.2 10.2 74 139-218 245-318 (456)
363 PRK08058 DNA polymerase III su 94.2 0.35 7.6E-06 51.4 11.0 43 93-135 10-52 (329)
364 TIGR02012 tigrfam_recA protein 94.2 0.18 3.8E-06 53.3 8.5 56 96-154 41-98 (321)
365 PRK13767 ATP-dependent helicas 94.2 0.32 6.8E-06 58.7 11.7 89 133-222 278-367 (876)
366 COG1110 Reverse gyrase [DNA re 94.2 0.077 1.7E-06 62.3 6.2 82 298-380 123-213 (1187)
367 PRK06090 DNA polymerase III su 94.2 0.47 1E-05 50.1 11.6 48 89-136 3-50 (319)
368 PRK13833 conjugal transfer pro 94.1 0.11 2.4E-06 54.8 6.7 64 80-152 121-187 (323)
369 KOG0331 ATP-dependent RNA heli 94.1 0.23 4.9E-06 55.3 9.2 76 138-219 340-415 (519)
370 PRK11192 ATP-dependent RNA hel 94.1 0.19 4.2E-06 55.5 9.0 76 138-219 244-319 (434)
371 TIGR02639 ClpA ATP-dependent C 94.0 0.52 1.1E-05 55.8 12.9 48 87-135 180-227 (731)
372 KOG0383 Predicted helicase [Ge 94.0 0.022 4.8E-07 65.2 1.4 65 298-365 629-696 (696)
373 TIGR02782 TrbB_P P-type conjug 94.0 0.15 3.2E-06 53.5 7.5 56 90-152 117-175 (299)
374 TIGR00678 holB DNA polymerase 94.0 0.53 1.2E-05 45.5 10.9 25 111-135 14-38 (188)
375 TIGR01547 phage_term_2 phage t 94.0 0.38 8.3E-06 52.5 10.9 130 114-251 4-142 (396)
376 COG0470 HolB ATPase involved i 93.9 0.38 8.3E-06 50.5 10.5 24 113-136 26-49 (325)
377 PRK14087 dnaA chromosomal repl 93.9 0.82 1.8E-05 50.8 13.4 46 112-159 142-190 (450)
378 TIGR03877 thermo_KaiC_1 KaiC d 93.9 0.13 2.7E-06 52.1 6.5 52 109-161 19-70 (237)
379 PRK09183 transposase/IS protei 93.9 0.51 1.1E-05 48.4 11.0 78 72-154 67-144 (259)
380 PRK06921 hypothetical protein; 93.9 1.4 3E-05 45.4 14.2 46 110-156 116-162 (266)
381 PF00004 AAA: ATPase family as 93.8 0.43 9.3E-06 42.7 9.2 18 114-131 1-18 (132)
382 PRK13894 conjugal transfer ATP 93.8 0.12 2.5E-06 54.7 6.1 55 90-151 133-190 (319)
383 PHA03368 DNA packaging termina 93.7 0.49 1.1E-05 54.0 11.2 158 112-283 255-418 (738)
384 PRK00440 rfc replication facto 93.7 0.65 1.4E-05 48.7 11.8 37 94-131 22-58 (319)
385 PRK14723 flhF flagellar biosyn 93.7 0.53 1.1E-05 55.1 11.7 51 111-161 185-239 (767)
386 PRK06305 DNA polymerase III su 93.7 0.59 1.3E-05 52.0 11.8 42 94-135 22-63 (451)
387 PRK07399 DNA polymerase III su 93.7 0.76 1.6E-05 48.6 12.1 43 94-136 9-51 (314)
388 PRK09354 recA recombinase A; P 93.6 0.26 5.7E-06 52.5 8.5 57 96-154 46-103 (349)
389 TIGR02237 recomb_radB DNA repa 93.6 0.4 8.8E-06 47.1 9.4 39 110-148 11-49 (209)
390 PF06745 KaiC: KaiC; InterPro 93.5 0.12 2.7E-06 51.6 5.7 52 109-161 17-69 (226)
391 PRK10865 protein disaggregatio 93.5 0.3 6.6E-06 58.6 9.7 60 93-153 572-639 (857)
392 PTZ00424 helicase 45; Provisio 93.4 0.31 6.8E-06 53.1 9.1 77 138-220 266-342 (401)
393 PRK11776 ATP-dependent RNA hel 93.4 0.29 6.3E-06 54.6 9.0 78 138-221 241-318 (460)
394 cd03115 SRP The signal recogni 93.4 0.64 1.4E-05 44.3 10.1 33 114-146 3-35 (173)
395 PHA02558 uvsW UvsW helicase; P 93.3 0.53 1.1E-05 53.2 10.8 79 137-220 342-420 (501)
396 PRK05564 DNA polymerase III su 93.3 0.91 2E-05 47.9 12.0 40 94-133 9-48 (313)
397 PF01443 Viral_helicase1: Vira 93.3 0.13 2.7E-06 51.5 5.3 25 212-236 61-85 (234)
398 PHA02244 ATPase-like protein 93.2 1 2.2E-05 48.3 12.0 38 91-131 102-139 (383)
399 COG3972 Superfamily I DNA and 93.2 1.1 2.4E-05 49.0 12.2 77 78-163 152-230 (660)
400 PF13871 Helicase_C_4: Helicas 93.2 0.24 5.3E-06 50.9 7.1 66 343-409 52-126 (278)
401 cd01393 recA_like RecA is a b 93.2 0.47 1E-05 47.2 9.2 40 110-149 18-63 (226)
402 TIGR00708 cobA cob(I)alamin ad 93.1 0.7 1.5E-05 44.2 9.7 37 113-149 7-43 (173)
403 TIGR02640 gas_vesic_GvpN gas v 93.1 0.25 5.5E-06 50.7 7.3 53 88-146 1-53 (262)
404 PF03354 Terminase_1: Phage Te 93.1 0.25 5.5E-06 55.4 7.8 76 92-167 1-82 (477)
405 PRK01297 ATP-dependent RNA hel 93.1 0.39 8.4E-06 53.8 9.3 76 139-220 335-410 (475)
406 PRK11634 ATP-dependent RNA hel 93.0 0.37 8.1E-06 55.8 9.2 75 139-219 245-319 (629)
407 PRK11057 ATP-dependent DNA hel 93.0 0.36 7.8E-06 55.8 9.1 77 137-219 234-310 (607)
408 PLN00206 DEAD-box ATP-dependen 92.9 0.6 1.3E-05 53.0 10.5 76 139-219 367-442 (518)
409 PRK06964 DNA polymerase III su 92.8 1 2.2E-05 48.1 11.5 45 90-136 2-46 (342)
410 PRK13900 type IV secretion sys 92.8 0.16 3.4E-06 54.1 5.4 42 111-153 160-201 (332)
411 PRK13851 type IV secretion sys 92.7 0.16 3.4E-06 54.3 5.3 41 111-152 162-202 (344)
412 PRK09694 helicase Cas3; Provis 92.7 0.89 1.9E-05 54.4 11.9 91 128-222 549-647 (878)
413 PRK11034 clpA ATP-dependent Cl 92.6 0.35 7.6E-06 57.0 8.3 38 93-130 462-507 (758)
414 COG0513 SrmB Superfamily II DN 92.5 0.67 1.4E-05 52.5 10.1 74 139-218 273-346 (513)
415 PF03969 AFG1_ATPase: AFG1-lik 92.4 1.9 4.2E-05 46.4 13.0 25 109-135 60-84 (362)
416 TIGR03345 VI_ClpV1 type VI sec 92.3 0.46 1E-05 57.0 8.9 54 93-147 570-631 (852)
417 PRK05973 replicative DNA helic 92.2 0.25 5.3E-06 49.9 5.6 51 110-161 63-113 (237)
418 COG2804 PulE Type II secretory 92.2 0.25 5.5E-06 54.4 6.0 42 89-136 241-282 (500)
419 CHL00176 ftsH cell division pr 92.2 3.8 8.2E-05 47.6 15.9 20 110-129 215-234 (638)
420 KOG0333 U5 snRNP-like RNA heli 92.1 0.7 1.5E-05 50.8 9.0 74 139-218 517-590 (673)
421 TIGR01587 cas3_core CRISPR-ass 92.1 1.4 3E-05 47.2 11.6 85 132-221 215-303 (358)
422 COG4962 CpaF Flp pilus assembl 92.0 0.2 4.2E-06 52.7 4.6 60 89-155 157-216 (355)
423 TIGR02639 ClpA ATP-dependent C 92.0 0.49 1.1E-05 56.0 8.6 39 93-131 458-504 (731)
424 PF05621 TniB: Bacterial TniB 92.0 0.5 1.1E-05 49.1 7.6 55 109-163 59-120 (302)
425 cd01130 VirB11-like_ATPase Typ 91.9 0.34 7.5E-06 46.9 6.2 52 89-147 9-60 (186)
426 COG3973 Superfamily I DNA and 91.8 0.44 9.6E-06 53.3 7.3 53 109-161 224-282 (747)
427 PRK14721 flhF flagellar biosyn 91.8 2.1 4.6E-05 46.9 12.6 124 110-261 190-323 (420)
428 PF02456 Adeno_IVa2: Adenoviru 91.6 0.24 5.2E-06 51.1 4.7 39 111-150 87-128 (369)
429 PF00158 Sigma54_activat: Sigm 91.6 0.45 9.7E-06 45.5 6.4 20 109-128 20-39 (168)
430 PRK06995 flhF flagellar biosyn 91.6 2.2 4.7E-05 47.7 12.5 52 111-162 256-311 (484)
431 TIGR02538 type_IV_pilB type IV 91.5 1 2.3E-05 51.5 10.4 43 89-137 299-341 (564)
432 PRK09376 rho transcription ter 91.5 1.1 2.4E-05 48.4 9.8 20 109-128 167-186 (416)
433 PRK11034 clpA ATP-dependent Cl 91.5 1.1 2.3E-05 53.1 10.5 25 109-133 205-229 (758)
434 cd01121 Sms Sms (bacterial rad 91.5 1.3 2.9E-05 47.8 10.6 50 110-160 81-130 (372)
435 TIGR03817 DECH_helic helicase/ 91.4 1.1 2.3E-05 53.2 10.6 88 134-222 266-356 (742)
436 PRK06835 DNA replication prote 91.3 0.54 1.2E-05 50.0 7.2 44 111-155 183-226 (329)
437 TIGR03346 chaperone_ClpB ATP-d 91.3 1.6 3.5E-05 52.6 12.1 44 88-132 172-215 (852)
438 COG1222 RPT1 ATP-dependent 26S 91.3 2.2 4.7E-05 45.2 11.3 21 108-128 182-202 (406)
439 PRK14086 dnaA chromosomal repl 91.3 1.1 2.5E-05 51.1 10.1 43 112-155 315-359 (617)
440 cd01129 PulE-GspE PulE/GspE Th 91.3 0.41 9E-06 49.2 6.2 56 89-150 63-119 (264)
441 cd01394 radB RadB. The archaea 91.2 1.2 2.7E-05 44.0 9.4 37 110-146 18-54 (218)
442 COG0468 RecA RecA/RadA recombi 91.2 0.86 1.9E-05 47.1 8.4 42 114-155 63-104 (279)
443 cd01131 PilT Pilus retraction 91.2 1.7 3.6E-05 42.6 10.2 37 114-151 4-42 (198)
444 COG0593 DnaA ATPase involved i 91.2 1.9 4.2E-05 46.8 11.3 52 88-140 91-142 (408)
445 PF02572 CobA_CobO_BtuR: ATP:c 91.1 3 6.4E-05 40.0 11.4 129 114-254 6-143 (172)
446 COG1485 Predicted ATPase [Gene 91.1 2.2 4.8E-05 45.1 11.2 138 78-252 14-174 (367)
447 TIGR01389 recQ ATP-dependent D 91.1 0.89 1.9E-05 52.5 9.4 75 139-219 224-298 (591)
448 CHL00095 clpC Clp protease ATP 91.0 0.53 1.1E-05 56.5 7.7 41 92-132 512-560 (821)
449 PF14617 CMS1: U3-containing 9 91.0 0.39 8.5E-06 48.8 5.6 82 139-224 126-212 (252)
450 TIGR02858 spore_III_AA stage I 90.9 1.5 3.2E-05 45.3 9.8 18 111-128 111-128 (270)
451 PF02559 CarD_CdnL_TRCF: CarD- 90.9 0.53 1.1E-05 40.5 5.6 47 14-63 52-98 (98)
452 PF12846 AAA_10: AAA-like doma 90.8 0.38 8.2E-06 49.7 5.5 42 112-153 2-43 (304)
453 PRK10865 protein disaggregatio 90.8 1.7 3.8E-05 52.3 11.7 40 94-134 183-222 (857)
454 TIGR03689 pup_AAA proteasome A 90.8 3.8 8.1E-05 46.2 13.5 20 109-128 214-233 (512)
455 PRK10436 hypothetical protein; 90.6 0.49 1.1E-05 52.6 6.3 42 89-136 201-242 (462)
456 KOG2170 ATPase of the AAA+ sup 90.5 4.7 0.0001 41.8 12.6 63 76-139 74-138 (344)
457 PF00437 T2SE: Type II/IV secr 90.5 0.27 5.9E-06 50.6 4.0 40 111-151 127-167 (270)
458 KOG0332 ATP-dependent RNA heli 90.4 1 2.3E-05 47.5 8.0 73 140-218 331-403 (477)
459 TIGR01241 FtsH_fam ATP-depende 90.2 9 0.0002 43.2 16.2 21 109-129 86-106 (495)
460 KOG0701 dsRNA-specific nucleas 90.2 0.22 4.7E-06 62.0 3.4 94 302-397 294-398 (1606)
461 PRK04195 replication factor C 90.0 3.7 8E-05 46.1 12.9 34 111-147 39-72 (482)
462 TIGR02974 phageshock_pspF psp 90.0 1.6 3.5E-05 46.5 9.4 19 110-128 21-39 (329)
463 TIGR03880 KaiC_arch_3 KaiC dom 89.9 0.53 1.2E-05 46.9 5.5 51 110-161 15-65 (224)
464 PRK01172 ski2-like helicase; P 89.8 1.8 3.9E-05 50.8 10.6 88 136-225 233-340 (674)
465 TIGR02238 recomb_DMC1 meiotic 89.8 1.5 3.3E-05 46.2 9.0 50 97-148 84-139 (313)
466 TIGR03881 KaiC_arch_4 KaiC dom 89.8 0.55 1.2E-05 46.9 5.5 49 109-158 18-66 (229)
467 PRK07414 cob(I)yrinic acid a,c 89.7 1.4 3.1E-05 42.3 7.9 37 114-150 24-60 (178)
468 KOG0991 Replication factor C, 89.6 1.1 2.4E-05 44.6 7.0 24 111-134 48-71 (333)
469 TIGR00767 rho transcription te 89.6 1.6 3.4E-05 47.4 8.9 27 109-136 166-192 (415)
470 PHA00350 putative assembly pro 89.5 0.91 2E-05 49.3 7.2 30 113-142 3-33 (399)
471 PRK03992 proteasome-activating 89.5 3.8 8.2E-05 44.7 12.1 22 109-130 163-184 (389)
472 CHL00095 clpC Clp protease ATP 89.4 3.4 7.4E-05 49.6 12.7 41 94-135 184-224 (821)
473 COG0467 RAD55 RecA-superfamily 89.4 0.58 1.3E-05 47.9 5.4 52 109-161 21-72 (260)
474 COG0210 UvrD Superfamily I DNA 89.4 1 2.2E-05 52.7 8.0 67 89-164 2-72 (655)
475 COG2874 FlaH Predicted ATPases 89.4 6.3 0.00014 39.0 12.0 125 110-250 27-168 (235)
476 PF00271 Helicase_C: Helicase 89.3 0.86 1.9E-05 36.9 5.4 55 168-223 7-61 (78)
477 PRK06067 flagellar accessory p 88.9 0.74 1.6E-05 46.3 5.6 52 109-161 23-74 (234)
478 cd00984 DnaB_C DnaB helicase C 88.8 0.63 1.4E-05 46.8 5.1 38 110-147 12-50 (242)
479 COG0542 clpA ATP-binding subun 88.6 3 6.4E-05 48.9 10.9 105 93-227 495-607 (786)
480 COG2812 DnaX DNA polymerase II 88.6 1.4 3.1E-05 49.3 8.0 39 211-249 117-157 (515)
481 TIGR03346 chaperone_ClpB ATP-d 88.6 1.1 2.3E-05 54.2 7.6 42 92-133 568-617 (852)
482 PRK09361 radB DNA repair and r 88.6 0.77 1.7E-05 45.8 5.5 39 110-148 22-60 (225)
483 PF02534 T4SS-DNA_transf: Type 88.4 0.6 1.3E-05 52.2 5.1 57 112-175 45-101 (469)
484 cd01123 Rad51_DMC1_radA Rad51_ 88.4 1.8 3.9E-05 43.3 8.1 38 110-147 18-61 (235)
485 TIGR02688 conserved hypothetic 88.4 1.8 4E-05 47.2 8.4 68 72-139 169-238 (449)
486 PRK11823 DNA repair protein Ra 88.3 2.8 6E-05 46.6 10.2 50 110-160 79-128 (446)
487 TIGR01243 CDC48 AAA family ATP 88.3 8.7 0.00019 45.6 14.9 21 110-130 486-506 (733)
488 PRK08939 primosomal protein Dn 88.3 1.2 2.7E-05 46.8 7.0 44 110-154 155-198 (306)
489 TIGR02533 type_II_gspE general 88.2 0.79 1.7E-05 51.4 5.8 51 89-145 225-276 (486)
490 KOG2036 Predicted P-loop ATPas 88.2 4.3 9.4E-05 46.3 11.2 149 89-250 253-412 (1011)
491 COG1219 ClpX ATP-dependent pro 88.0 0.38 8.2E-06 49.9 2.8 20 111-130 97-116 (408)
492 TIGR01054 rgy reverse gyrase. 88.0 1.2 2.7E-05 55.1 7.7 83 299-381 120-210 (1171)
493 PRK08699 DNA polymerase III su 87.9 7.7 0.00017 41.2 12.8 43 90-134 2-44 (325)
494 PHA02542 41 41 helicase; Provi 87.7 1.4 3E-05 49.3 7.3 50 111-161 190-239 (473)
495 KOG0733 Nuclear AAA ATPase (VC 87.7 1.4 2.9E-05 49.7 7.0 20 109-128 221-240 (802)
496 TIGR03819 heli_sec_ATPase heli 87.6 0.9 1.9E-05 48.6 5.5 56 90-152 163-218 (340)
497 TIGR02655 circ_KaiC circadian 87.5 1.1 2.5E-05 50.2 6.6 52 109-161 261-312 (484)
498 TIGR03345 VI_ClpV1 type VI sec 87.5 1.6 3.4E-05 52.6 8.1 43 89-132 187-229 (852)
499 PF02606 LpxK: Tetraacyldisacc 87.4 22 0.00047 37.8 15.8 57 299-360 226-287 (326)
500 PRK15429 formate hydrogenlyase 87.4 4.7 0.0001 47.4 11.9 20 109-128 397-416 (686)
No 1
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3e-127 Score=1088.51 Aligned_cols=625 Identities=41% Similarity=0.677 Sum_probs=580.8
Q ss_pred ccccccccccccc---------eeeeecCCCCCCchHHHhcCCCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCC
Q 006476 2 HMYLCNSCTCGSI---------MFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 72 (643)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~ 72 (643)
|=||.+.|..++| +|+||+|.++ ..|+|+|||+ ++|+++|+|++++++++|.+|+++|++|+..+|++
T Consensus 500 ~dyL~l~Ya~~dkLyVPVeql~lisrY~g~~~--~~p~L~kLG~-~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~a 576 (1139)
T COG1197 500 RDYLELEYAGEDKLYVPVEQLHLISRYVGASD--EAPKLHKLGG-GAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFA 576 (1139)
T ss_pred cceEEEEEcCCCeEEEEHHHhhHHhhccCCCC--CCccccccCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 3477887777765 5899998755 4799999985 99999999999999999999999999999999999
Q ss_pred CCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHH
Q 006476 73 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 151 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~L 151 (643)
|++|. |+..|++.|||+.||+|..||+++++|| +++++||+||||++|+|||+||++|++.++++|+||+|||||+.|
T Consensus 577 f~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM-~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlL 655 (1139)
T COG1197 577 FPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDM-ESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLL 655 (1139)
T ss_pred CCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHh-ccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHh
Confidence 99988 9999999999999999999999999999 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHH
Q 006476 152 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE 231 (643)
Q Consensus 152 a~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~ 231 (643)
|+|||++|++||.+|| ++|..++++.+.++++..++.+++|++|||||||.+|++++.|+|+||+||||+||||+++++
T Consensus 656 A~QHy~tFkeRF~~fP-V~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk~KE 734 (1139)
T COG1197 656 AQQHYETFKERFAGFP-VRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKE 734 (1139)
T ss_pred HHHHHHHHHHHhcCCC-eeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhhcCccHHH
Confidence 9999999999999997 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCccceeEEEccCCHHHHHHHHHHHHhcCCeEEEEecCcc
Q 006476 232 KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 311 (643)
Q Consensus 232 ~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~i~~~l~~~~qvlvf~~~~~ 311 (643)
+|++++.++++|.|||||+|||++|++.|++|.|+|.+||.+|.||+|++.++++..+++++.+++.||||+++++|+++
T Consensus 735 kLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~ 814 (1139)
T COG1197 735 KLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVE 814 (1139)
T ss_pred HHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHH
Q 006476 312 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLR 391 (643)
Q Consensus 312 ~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~ 391 (643)
+++.+++.|++++|+++|++.||+|+..+.+++|.+|.+|+++|||||+|+|+||||||+||+|+.++++||++|+||++
T Consensus 815 ~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLR 894 (1139)
T COG1197 815 SIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLR 894 (1139)
T ss_pred hHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCceEEEEEecCCCCCcHHHHHHHHHHHHHhhcccchhhhhhhcccccCCCccCccccCCccchhhhhHHHHHH
Q 006476 392 GRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLF 471 (643)
Q Consensus 392 GR~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~~~~~~~~~~~l~ 471 (643)
||+||+++.||||++|++.+.+++.+.+||.+|++++++|+||++|++||+|||+||+||.+|||+|.+|||++|++||+
T Consensus 895 GRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeIRGaGNlLG~eQSG~I~~VGf~LY~~mLe 974 (1139)
T COG1197 895 GRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLEIRGAGNLLGEEQSGHIESVGFDLYMEMLE 974 (1139)
T ss_pred cccCCccceEEEEEeecCccccCHHHHHHHHHHHhhhhcCchHHHHhcchhccccccccCccccCchheecHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCccccccCCcceeEeeccCCCCCccccCCCCCchHHHHHHHHhcccCHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 006476 472 ESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 551 (643)
Q Consensus 472 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~ 551 (643)
+||+++++..........+.++++++++||++||++.+.|+++|||++.+ ++.+++.++..||+||||++|+++++||
T Consensus 975 eAI~~lk~~~e~~~~~~~~eIdL~~~a~iPe~YI~d~~~rl~~YkRi~~~--~s~~el~~i~~EliDRFG~lP~ev~~Ll 1052 (1139)
T COG1197 975 EAIAALKGSLEVLEEEKEVEIDLPVPAFIPEDYIPDDNLRLELYKRLANA--ESEEELEEIKEELIDRFGPLPDEVKNLL 1052 (1139)
T ss_pred HHHHHHhcCCcccccCCCeeEecCCCCcCChhhccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999998332233345789999999999999999999999999999987 7789999999999999999999999999
Q ss_pred HHHHHHHHhhhcCcceEeecCCEEEEEeccCHHH-HHHHHHhhcccccccceeeeCCeEEEEEEec-CChHHHHHHHHHH
Q 006476 552 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKV-FKMMIDSMTSEVHRNSLTFEGDQIKAELLLE-LPREQLLNWIFQC 629 (643)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 629 (643)
.+++||.+|.++||.+|..+++.+.|.+..+..+ ...+.+.++.... ..++. +...+.+... ....++++++..+
T Consensus 1053 ~i~~lk~la~~lgI~~i~~~~~~~~i~f~~~~~~~~~~l~~~~~~~~~--~~~~~-~~~~i~~~~~~~~~~~~l~~~~~~ 1129 (1139)
T COG1197 1053 DIAELKLLARKLGIEKIDAGENGVVIEFSKNEQVNPKKLIKLLQKQPL--KAKLK-GDTKLLFIKDLIEPEERLDAVAKL 1129 (1139)
T ss_pred HHHHHHHHHHHcCCeeeccCCceEEEEeccccccCHHHHHHHhhccce--eeecC-CCceEEEecccCCHHHHHHHHHHH
Confidence 9999999999999999999999999987755322 3444444443222 22333 4445554444 5667789999999
Q ss_pred HHHHHhh
Q 006476 630 LAELYAS 636 (643)
Q Consensus 630 ~~~~~~~ 636 (643)
+..+...
T Consensus 1130 l~~L~~~ 1136 (1139)
T COG1197 1130 LKALAEL 1136 (1139)
T ss_pred HHHHHhh
Confidence 9887653
No 2
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4.2e-100 Score=902.77 Aligned_cols=621 Identities=35% Similarity=0.617 Sum_probs=548.2
Q ss_pred cccccccccc---------ceeeeecCCCCCCchHHHhcCCCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCC
Q 006476 4 YLCNSCTCGS---------IMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 74 (643)
Q Consensus 4 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~ 74 (643)
|+.+++..++ .+|+||+|+++ ..|+|++||+ ++|+++|++++++++++|.+|+++|++|...++++|+
T Consensus 508 ~~~l~y~~~~~l~vPv~~~~~~~~y~~~~~--~~~~l~~lg~-~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~~~~~~ 584 (1147)
T PRK10689 508 YLMLTYANDAKLYVPVSSLHLISRYAGGAE--ENAPLHKLGG-DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK 584 (1147)
T ss_pred EEEEEECCCCeEEeeHHHhCcEeeecCCCC--CCCccccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 5556665444 46899999865 3699999984 9999999999999999999999999999999999998
Q ss_pred CCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHH
Q 006476 75 KNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 153 (643)
Q Consensus 75 ~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~ 153 (643)
+++ ++.+|.+.|+|.|||+|.+||+.++++| ++..+||+|+|||||||||++|+.+++..+.+|++++|++||++||.
T Consensus 585 ~~~~~~~~~~~~~~~~~T~~Q~~aI~~il~d~-~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~ 663 (1147)
T PRK10689 585 HDREQYQLFCDSFPFETTPDQAQAINAVLSDM-CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQ 663 (1147)
T ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh-hcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHH
Confidence 887 9999999999999999999999999999 46778999999999999999999999999899999999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHH
Q 006476 154 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKI 233 (643)
Q Consensus 154 Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l 233 (643)
|+++.|.++++.+ ++++..++|+.+..++...++.+.+|.++|+||||+++...+.+++++++||||+|+||+.+.+.+
T Consensus 664 Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrfG~~~~e~l 742 (1147)
T PRK10689 664 QHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRHKERI 742 (1147)
T ss_pred HHHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhhcchhHHHHH
Confidence 9999999988887 489999999999988888889999999999999999998888899999999999999999999999
Q ss_pred HhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCccceeEEEccCCHHHHHHHHHHHHhcCCeEEEEecCccCh
Q 006476 234 ASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 313 (643)
Q Consensus 234 ~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~i~~~l~~~~qvlvf~~~~~~~ 313 (643)
+.++.++|+++|||||+|+++.++..++++++.+.++|..+.++.+++..+....+..++.+++.+++|++||||+++.+
T Consensus 743 k~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~il~el~r~gqv~vf~n~i~~i 822 (1147)
T PRK10689 743 KAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENI 822 (1147)
T ss_pred HhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHHHHHHHhcCCeEEEEECCHHHH
Confidence 99999999999999999999999999999999999998888899888877776667788888899999999999999999
Q ss_pred HHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhc
Q 006476 314 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGR 393 (643)
Q Consensus 314 e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR 393 (643)
+.+++.|+..+|++++.++||+|++.+|++++.+|++|+++|||||+++++|+|+|++++||+.++++|++++|+||+||
T Consensus 823 e~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GR 902 (1147)
T PRK10689 823 QKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGR 902 (1147)
T ss_pred HHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEEecCCCCCcHHHHHHHHHHHHHhhcccchhhhhhhcccccCCCccCccccCCccchhhhhHHHHHHHH
Q 006476 394 VGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFES 473 (643)
Q Consensus 394 ~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~~~~~~~~~~~l~~a 473 (643)
|||.|+.|+||+++++...+++.+.+||.++++++++|+||.+|++||+|||+||++|.+|||++..+||++|++||++|
T Consensus 903 vGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~rg~g~~~g~~q~g~~~~~g~~~y~~~l~~~ 982 (1147)
T PRK10689 903 VGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGQMETIGFSLYMELLENA 982 (1147)
T ss_pred cCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCccCCCCccCCCccccCHHHHHHHHHHH
Confidence 99999999999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCccccccC---CcceeEeeccCCCCCccccCCCCCchHHHHHHHHhcccCHHHHHHHHHHHHhhcCCCcHHHHHH
Q 006476 474 LSKVDEHCVISVP---YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 550 (643)
Q Consensus 474 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~ 550 (643)
+.+++++.....+ ...+.+++++++++|+.||++...|+++|+|++.+ .+.+++.++..||.||||++|+++++|
T Consensus 983 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~yi~~~~~r~~~y~~~~~~--~~~~~~~~~~~e~~drfg~~p~~~~~l 1060 (1147)
T PRK10689 983 VDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASA--KNENELEEIKVELIDRFGLLPDPARNL 1060 (1147)
T ss_pred HHHHhcCCCcccccccCCceEEecCCCccCChhhcCChHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHCCCCcHHHHHH
Confidence 9988843211111 13567999999999999999999999999999987 677899999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceEeecCCEEEEEeccCHHH-HHHHHHhhcccccccceeeeCCeEEEEEEecCC-hHHHHHHHHH
Q 006476 551 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKV-FKMMIDSMTSEVHRNSLTFEGDQIKAELLLELP-REQLLNWIFQ 628 (643)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 628 (643)
|.+++||.+|+++||.+|....+...+.+.....+ ...+...+. .....+++.++ ..+.+....+ ..+.++++.+
T Consensus 1061 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 1137 (1147)
T PRK10689 1061 LDIARLRQQAQKLGIRKLEGNEKGGFIEFAEKNHVDPAWLIGLLQ--KQPQHYRLDGP-TRLKFIQDLSERKTRIEWVRQ 1137 (1147)
T ss_pred HHHHHHHHHHHHCCCcEEEecCCceEEEEcCCCCcCHHHHHHHHh--hcCcEEEECCC-ceEEEecCCCCHHHHHHHHHH
Confidence 99999999999999999986544435554432111 111222222 22344555533 2333333433 4446888888
Q ss_pred HHHHHH
Q 006476 629 CLAELY 634 (643)
Q Consensus 629 ~~~~~~ 634 (643)
+|..+.
T Consensus 1138 ~l~~l~ 1143 (1147)
T PRK10689 1138 FMRELE 1143 (1147)
T ss_pred HHHHHH
Confidence 887765
No 3
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.3e-100 Score=887.91 Aligned_cols=558 Identities=43% Similarity=0.721 Sum_probs=522.0
Q ss_pred cccccccccc---------ceeeeecCCCCCCchHHHhcCCCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCC
Q 006476 4 YLCNSCTCGS---------IMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 74 (643)
Q Consensus 4 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~ 74 (643)
|+++.+..++ ++|+||+|+++ ..|+|++||+ ++|+++|.+++++++++|.+|+++|++|....+++++
T Consensus 359 y~~l~y~~~~~l~vPv~~~~~~~~y~~~~~--~~~~l~~lg~-~~w~~~k~~~~~~~~~~a~~l~~l~a~r~~~~~~~~~ 435 (926)
T TIGR00580 359 YLVLEYAGEDKLYVPVEQLHLISRYVGGSG--KNPALDKLGG-KSWEKTKAKVKKSVREIAAKLIELYAKRKAIKGHAFP 435 (926)
T ss_pred EEEEEECCCCEEEEEHHHcCceeeecCCCC--CCCcccccCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 5555555444 46899999755 3799999985 9999999999999999999999999999999999998
Q ss_pred CCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHH
Q 006476 75 KNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 153 (643)
Q Consensus 75 ~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~ 153 (643)
+++ +++.|.+.|+|+|||+|.+||+.++++|. ++++||+++|||||||||++|++|++.++.+|++++|++||++||.
T Consensus 436 ~~~~~~~~~~~~~~f~~T~~Q~~aI~~I~~d~~-~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~ 514 (926)
T TIGR00580 436 PDLEWQQEFEDSFPFEETPDQLKAIEEIKADME-SPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQ 514 (926)
T ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhc-ccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHH
Confidence 877 99999999999999999999999999994 6778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHH
Q 006476 154 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKI 233 (643)
Q Consensus 154 Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l 233 (643)
|++++|+++++.+ ++++..++|+.+..++...++.+++|+++||||||..+.+.+.|+++++|||||+|+||+.+++.+
T Consensus 515 Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDEahrfgv~~~~~L 593 (926)
T TIGR00580 515 QHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQRFGVKQKEKL 593 (926)
T ss_pred HHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEeecccccchhHHHHH
Confidence 9999999999887 599999999998888889999999999999999999998888999999999999999999999999
Q ss_pred HhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCccceeEEEccCCHHHHHHHHHHHHhcCCeEEEEecCccCh
Q 006476 234 ASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 313 (643)
Q Consensus 234 ~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~i~~~l~~~~qvlvf~~~~~~~ 313 (643)
+.++.++++++|||||+|+++.+.+.+..+++.+.++|.++.++.+++..++...+..++.+.+.+++|++||||+++++
T Consensus 594 ~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el~~g~qv~if~n~i~~~ 673 (926)
T TIGR00580 594 KELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDPELVREAIRRELLRGGQVFYVHNRIESI 673 (926)
T ss_pred HhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCHHHHHHHHHHHHHcCCeEEEEECCcHHH
Confidence 99989999999999999999999999999999999999999999999888877777888888899999999999999999
Q ss_pred HHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhc
Q 006476 314 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGR 393 (643)
Q Consensus 314 e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR 393 (643)
+.+++.|+..+|++++..+||+|++.+|++++++|++|+++|||||+++++|+|+|++++||++++++|++++|+||+||
T Consensus 674 e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GR 753 (926)
T TIGR00580 674 EKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGR 753 (926)
T ss_pred HHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEEecCCCCCcHHHHHHHHHHHHHhhcccchhhhhhhcccccCCCccCccccCCccchhhhhHHHHHHHH
Q 006476 394 VGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFES 473 (643)
Q Consensus 394 ~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~~~~~~~~~~~l~~a 473 (643)
+||.|+.|+||+++++.+.+++.+.+||.++++++++|+||.+|++||++||+|++||.+|||++..+||++|++||++|
T Consensus 754 vGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl~~Rg~G~~lG~~QsG~~~~~~~~~~~~~l~~a 833 (926)
T TIGR00580 754 VGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEFSELGAGFKIALHDLEIRGAGNLLGEEQSGHIESIGFDLYMELLEEA 833 (926)
T ss_pred CCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCcCCCCCcccCchhhccHHHHHHHHHHH
Confidence 99999999999999988878999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCccccccCCcceeEeeccCCCCCccccCCCCCchHHHHHHHHhcccCHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 006476 474 LSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 553 (643)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~ 553 (643)
+++++++.... +...+.+++++++++|+.||++...|+++|+|++.+ .+.++++++.+||.||||++|+++++||.+
T Consensus 834 ~~~~~~~~~~~-~~~~~~~~~~~~~~ip~~yi~~~~~r~~~y~~~~~~--~~~~~~~~~~~e~~drfg~~p~~~~~l~~~ 910 (926)
T TIGR00580 834 IEELKGGKPPK-LEEETDIELPYSAFIPDDYIADDSLRLEFYKRIASA--ETEEELEKIRDELIDRFGPLPEEARTLLDV 910 (926)
T ss_pred HHHHhcCCCCC-CCCceEEecCCCCcCChhhcCChHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99998322111 223668999999999999999999999999999987 677899999999999999999999999999
Q ss_pred HHHHHHhhhcCcceEe
Q 006476 554 LYVRRMAADIGITKIY 569 (643)
Q Consensus 554 ~~~~~~~~~~~~~~~~ 569 (643)
++||.+|+++||.+|.
T Consensus 911 ~~~~~~~~~~~~~~~~ 926 (926)
T TIGR00580 911 ARLKLLARKLGIRKLK 926 (926)
T ss_pred HHHHHHHHHcCCeeeC
Confidence 9999999999999873
No 4
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=4.7e-71 Score=600.19 Aligned_cols=425 Identities=36% Similarity=0.605 Sum_probs=385.7
Q ss_pred hHHHhcCCCCcHHHHH-HHHHHHhHHHHHHHHHHHHHHH---HcCCCCCCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhH
Q 006476 28 PRTLSKLSDTTAWERR-KTKGKVAIQKMVVDLMELYLHR---LKQKRPPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVE 102 (643)
Q Consensus 28 ~~~l~~l~~~~~w~~~-~~~~~~~~~~~~~~l~~~~~~r---~~~~~~~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~ 102 (643)
...+..+|.+.+-... ..+.+...+++..-.+.+...| ....+.+++.+. +.+.|.+..||+||..|++++.+|.
T Consensus 196 ~~al~~lH~P~~~~~~~~~~rRL~f~Ell~~ql~l~~~r~~~~~~~~~~~~~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~ 275 (677)
T COG1200 196 DEALRTLHFPKDEEDLKRARRRLAFEELLALQLSLLLRRAKRQKRSGIPLPANGELLAKFLAALPFKLTNAQKRVIKEIL 275 (677)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 5667777777665433 3344555555544434433333 345566677666 8999999999999999999999999
Q ss_pred HhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHH
Q 006476 103 RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAE 182 (643)
Q Consensus 103 ~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~ 182 (643)
+|| .++.+|++|++|++|||||.|++++++.++.+|.|++.++||-.||.|||+.+.++|.++ |++|+.++|....+.
T Consensus 276 ~Dl-~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~ 353 (677)
T COG1200 276 ADL-ASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKA 353 (677)
T ss_pred hhh-cCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhH
Confidence 999 578899999999999999999999999999999999999999999999999999999888 799999999999999
Q ss_pred HHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHhcCC-CceEEEeccCCChHhHHHHHhcC
Q 006476 183 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKI-SVDVLTLSATPIPRTLYLALTGF 261 (643)
Q Consensus 183 ~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~~~-~~~vl~lSATp~~~~~~~~~~~~ 261 (643)
+++.+..+.+|.++|+||||.++++.+.|++++++|+||-||||+.|+..|..... .+++|.|||||+|||+.+...|.
T Consensus 354 r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHRFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgD 433 (677)
T COG1200 354 RKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGD 433 (677)
T ss_pred HHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEeccccccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999888 79999999999999999999999
Q ss_pred CCcceeeCCCCCccceeEEEccC-CHHHHHHHHHHHHhcCCeEEEEecCccC--------hHHHHHHHHhhCCCCcEEEE
Q 006476 262 RDASLISTPPPERLPIKTHLSAF-SKEKVISAIKYELDRGGQVFYVLPRIKG--------LEEPMDFLQQAFPGVDIAIA 332 (643)
Q Consensus 262 ~~~~~i~~~~~~~~~v~~~~~~~-~~~~~~~~i~~~l~~~~qvlvf~~~~~~--------~e~l~~~L~~~~p~~~v~~~ 332 (643)
.|.|.|..-|..|.||.|++... ....+.+.+..++.+|.|++|+||.+++ ++.+++.|+..+|++++..+
T Consensus 434 ldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~ 513 (677)
T COG1200 434 LDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLV 513 (677)
T ss_pred ccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEE
Confidence 99999999999999999988764 4677899999999999999999999865 56788899988999999999
Q ss_pred eCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCC
Q 006476 333 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 333 hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~ 412 (643)
||+|++.+++++|++|++|+++|||||+++|.|||+||++.+|+.|+.+||+++++|.+||+||++.+++|++++.+..
T Consensus 514 HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~- 592 (677)
T COG1200 514 HGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL- 592 (677)
T ss_pred ecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred CcHHHHHHHHHHHHHhhcccchhhhhhhcccccCCCccCccccCCcc
Q 006476 413 LSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVG 459 (643)
Q Consensus 413 ~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~ 459 (643)
++.+.+|+..+++.+ +||.||++||++||.|++||..|+|.++
T Consensus 593 -~~~a~~RL~im~~t~---DGF~IAE~DLklRGpGe~lG~rQSG~~~ 635 (677)
T COG1200 593 -SEVAKQRLKIMRETT---DGFVIAEEDLKLRGPGELLGTRQSGLPE 635 (677)
T ss_pred -ChhHHHHHHHHHhcC---CcceehhhhHhccCCccccCCcccCCcc
Confidence 478899999999887 5999999999999999999999999765
No 5
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.2e-61 Score=554.59 Aligned_cols=425 Identities=36% Similarity=0.601 Sum_probs=365.0
Q ss_pred hHHHhcCCCCcHHHHH-HHHHHHhHHHHHHHHHHHH-HHH--HcCCCCCCCCC-hhHHHHHhcCCCCCCHHHHHHHHHhH
Q 006476 28 PRTLSKLSDTTAWERR-KTKGKVAIQKMVVDLMELY-LHR--LKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVE 102 (643)
Q Consensus 28 ~~~l~~l~~~~~w~~~-~~~~~~~~~~~~~~l~~~~-~~r--~~~~~~~~~~~-~~~~~~~~~~~~~~tp~Q~~ai~~i~ 102 (643)
...|..+|.|.+.+.. +.+.+.+.+|+..-.+.+- .++ ....+..++.+ .+.+.|.+.+||+||++|.+|++.+.
T Consensus 195 ~~al~~iH~P~~~~~~~~a~~rl~~~El~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~lt~~Q~~ai~~I~ 274 (681)
T PRK10917 195 AEALRAIHFPPSDEDLHPARRRLKFEELFALQLSLLLLRAGRRSKKAGPLPYDGELLKKFLASLPFELTGAQKRVVAEIL 274 (681)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 4568888877665542 3344555555543333332 222 12334444433 48899999999999999999999999
Q ss_pred HhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHH
Q 006476 103 RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAE 182 (643)
Q Consensus 103 ~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~ 182 (643)
+++. +..+|++|++||||||||++|+.|++..+.+|.+++|++||++||.|+++.+++.+..+ ++++..++|+.+..+
T Consensus 275 ~d~~-~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~ 352 (681)
T PRK10917 275 ADLA-SPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPL-GIRVALLTGSLKGKE 352 (681)
T ss_pred Hhhh-ccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhc-CcEEEEEcCCCCHHH
Confidence 9984 56789999999999999999999999999999999999999999999999999877666 699999999999999
Q ss_pred HHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCC
Q 006476 183 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262 (643)
Q Consensus 183 ~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~ 262 (643)
+...+..+.+|+++|+||||+++.+.+.+++++++||||+|+||+.++..+.....++++++|||||+|+++.+...+..
T Consensus 353 r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~ 432 (681)
T PRK10917 353 RREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGVEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDL 432 (681)
T ss_pred HHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhhHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCC
Confidence 99999999999999999999999988889999999999999999999888887777899999999999999988888888
Q ss_pred CcceeeCCCCCccceeEEEccCC-HHHHHHHHHHHHhcCCeEEEEecCcc--------ChHHHHHHHHhhCCCCcEEEEe
Q 006476 263 DASLISTPPPERLPIKTHLSAFS-KEKVISAIKYELDRGGQVFYVLPRIK--------GLEEPMDFLQQAFPGVDIAIAH 333 (643)
Q Consensus 263 ~~~~i~~~~~~~~~v~~~~~~~~-~~~~~~~i~~~l~~~~qvlvf~~~~~--------~~e~l~~~L~~~~p~~~v~~~h 333 (643)
+.+.+...|..+.++.+.+.... ...+.+.+.+.+..+.|++||||.++ .++.+++.|...+++.++..+|
T Consensus 433 ~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lH 512 (681)
T PRK10917 433 DVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLH 512 (681)
T ss_pred ceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEe
Confidence 88888877777788877665543 45567888888888999999999764 3567888898888889999999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCCC
Q 006476 334 GQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLL 413 (643)
Q Consensus 334 g~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~~ 413 (643)
|+|++.+|++++++|++|+.+|||||+++++|+|+|++++||++++|+|++++|+||+|||||.|.+|+||++++.. .
T Consensus 513 G~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~--~ 590 (681)
T PRK10917 513 GRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDP--L 590 (681)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999643 3
Q ss_pred cHHHHHHHHHHHHHhhcccchhhhhhhcccccCCCccCccccCCcc
Q 006476 414 SDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVG 459 (643)
Q Consensus 414 ~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~ 459 (643)
++...+|+..++... +||.+++.|+.+||.|+++|..|||..+
T Consensus 591 ~~~~~~rl~~~~~~~---dgf~iae~dl~~rg~g~~~g~~q~g~~~ 633 (681)
T PRK10917 591 SETARERLKIMRETN---DGFVIAEKDLELRGPGELLGTRQSGLPE 633 (681)
T ss_pred ChhHHHHHHHHHHhc---chHHHHHHhHhhCCCccccCceecCCCC
Confidence 567889999888765 5999999999999999999999999654
No 6
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=9.3e-61 Score=546.00 Aligned_cols=425 Identities=34% Similarity=0.597 Sum_probs=359.6
Q ss_pred hHHHhcCCCCcHHHHH-HHHHHHhHHHHHHHHHHHHHHHH----cCCCCCCCCC-hhHHHHHhcCCCCCCHHHHHHHHHh
Q 006476 28 PRTLSKLSDTTAWERR-KTKGKVAIQKMVVDLMELYLHRL----KQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDV 101 (643)
Q Consensus 28 ~~~l~~l~~~~~w~~~-~~~~~~~~~~~~~~l~~~~~~r~----~~~~~~~~~~-~~~~~~~~~~~~~~tp~Q~~ai~~i 101 (643)
...|..+|.|.+++.. .++.+...+|+..-.+.+...|. ...+..+..+ .+...|.+.+||+||+.|.+||+++
T Consensus 168 ~~al~~iH~P~~~~~~~~a~~rl~~~E~~~~ql~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpf~lt~~Q~~ai~~I 247 (630)
T TIGR00643 168 EDALRAIHFPKTLSLLELARRRLIFDEFFYLQLAMLARRLGEKQQFSAPPANPSEELLTKFLASLPFKLTRAQKRVVKEI 247 (630)
T ss_pred HHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 4567788877666442 23444445555433333221222 2234445444 4788899999999999999999999
Q ss_pred HHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChH
Q 006476 102 ERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKA 181 (643)
Q Consensus 102 ~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~ 181 (643)
.+++. ++.+|+++++||||||||++|+.|++..+.+|.+++|++||++||.|+++.+.+.+..+ ++++..++|+.+..
T Consensus 248 ~~~~~-~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~-gi~v~lltg~~~~~ 325 (630)
T TIGR00643 248 LQDLK-SDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPL-GIEVALLTGSLKGK 325 (630)
T ss_pred HHHhc-cCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhccc-CcEEEEEecCCCHH
Confidence 99884 56789999999999999999999999999999999999999999999999999877766 79999999999988
Q ss_pred HHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHhcCC---CceEEEeccCCChHhHHHHH
Q 006476 182 EKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKI---SVDVLTLSATPIPRTLYLAL 258 (643)
Q Consensus 182 ~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~~~---~~~vl~lSATp~~~~~~~~~ 258 (643)
++...+..+.+|+++|+||||+++.+.+.+++++++||||+|+||+.++..+..... +.++++|||||+|+++.+..
T Consensus 326 ~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~fg~~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~ 405 (630)
T TIGR00643 326 RRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHRFGVEQRKKLREKGQGGFTPHVLVMSATPIPRTLALTV 405 (630)
T ss_pred HHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhhccHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh
Confidence 888899999999999999999999988899999999999999999988887776654 78999999999999998887
Q ss_pred hcCCCcceeeCCCCCccceeEEEccCC-HHHHHHHHHHHHhcCCeEEEEecCcc--------ChHHHHHHHHhhCCCCcE
Q 006476 259 TGFRDASLISTPPPERLPIKTHLSAFS-KEKVISAIKYELDRGGQVFYVLPRIK--------GLEEPMDFLQQAFPGVDI 329 (643)
Q Consensus 259 ~~~~~~~~i~~~~~~~~~v~~~~~~~~-~~~~~~~i~~~l~~~~qvlvf~~~~~--------~~e~l~~~L~~~~p~~~v 329 (643)
.+..+.+.+...|..+.++.+++...+ ...+...+...+..+.+++|||+.++ .++.+++.|...+++.+|
T Consensus 406 ~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v 485 (630)
T TIGR00643 406 YGDLDTSIIDELPPGRKPITTVLIKHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNV 485 (630)
T ss_pred cCCcceeeeccCCCCCCceEEEEeCcchHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcE
Confidence 777777777776777778877765443 34567777788888999999999874 466788888888889999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecC
Q 006476 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPD 409 (643)
Q Consensus 330 ~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~ 409 (643)
..+||+|++.+|+.++++|++|+.+|||||+++++|+|+|++++||++++|+++.++|+||+||+||.|++|+|++++..
T Consensus 486 ~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~ 565 (630)
T TIGR00643 486 GLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKN 565 (630)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999943
Q ss_pred CCCCcHHHHHHHHHHHHHhhcccchhhhhhhcccccCCCccCccccCCcc
Q 006476 410 KSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVG 459 (643)
Q Consensus 410 ~~~~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~ 459 (643)
. .++.+.+|+..+.... +||.+++.||.+||.|++||..|||...
T Consensus 566 ~--~~~~~~~rl~~~~~~~---dgf~iae~dl~~Rg~g~~~g~~QsG~~~ 610 (630)
T TIGR00643 566 P--KSESAKKRLRVMADTL---DGFVIAEEDLELRGPGDLLGTKQSGYPE 610 (630)
T ss_pred C--CCHHHHHHHHHHHhhc---ccHHHHHHHHhcCCCcccCCCcccCCCc
Confidence 3 2567778888887654 5999999999999999999999999654
No 7
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-51 Score=441.29 Aligned_cols=338 Identities=21% Similarity=0.268 Sum_probs=279.8
Q ss_pred CCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC---------CCeE
Q 006476 73 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---------GKQA 142 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~---------g~~v 142 (643)
++.++ ....+...++-.|||+|.++|+.++. ++|++..+.||||||++|++|++..+.+ ++++
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~-------GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~v 168 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALS-------GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIV 168 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceecc-------CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeE
Confidence 34444 67788899999999999999999975 7999999999999999999999988765 7899
Q ss_pred EEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceE
Q 006476 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLL 217 (643)
Q Consensus 143 lil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~ll 217 (643)
|||+|||+||.|+.+.+.+ |+.-++++..+++|+.+... +...+.+| ++|+|+||++|.+. +.++++.++
T Consensus 169 LVL~PTRELA~QV~~~~~~-~~~~~~~~~~cvyGG~~~~~---Q~~~l~~g-vdiviaTPGRl~d~le~g~~~l~~v~yl 243 (519)
T KOG0331|consen 169 LVLAPTRELAVQVQAEARE-FGKSLRLRSTCVYGGAPKGP---QLRDLERG-VDVVIATPGRLIDLLEEGSLNLSRVTYL 243 (519)
T ss_pred EEEcCcHHHHHHHHHHHHH-HcCCCCccEEEEeCCCCccH---HHHHHhcC-CcEEEeCChHHHHHHHcCCccccceeEE
Confidence 9999999999999999987 66655688999999877665 56667778 99999999999864 567889999
Q ss_pred Eeeccccc---ch--hHHHHHHhc-CCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCC----ccceeEEEccCC--
Q 006476 218 VVDEEQRF---GV--KQKEKIASF-KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE----RLPIKTHLSAFS-- 285 (643)
Q Consensus 218 ViDEah~~---g~--~~~~~l~~~-~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~----~~~v~~~~~~~~-- 285 (643)
|+||||+| |+ +....+.++ ++..|++++|||++..+..++..++.++..+.+.... ...+.+.+...+
T Consensus 244 VLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~ 323 (519)
T KOG0331|consen 244 VLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDET 323 (519)
T ss_pred EeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHH
Confidence 99999996 54 345667788 6677899999999999999998888877766654332 122333332222
Q ss_pred -HHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccc
Q 006476 286 -KEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV 362 (643)
Q Consensus 286 -~~~~~~~i~~~l--~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~ 362 (643)
....+..+.... ..++++||||++++.|++++..|+.. ++++..+||+.++.+|+.+++.|++|+..||||||++
T Consensus 324 ~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~--~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVA 401 (519)
T KOG0331|consen 324 AKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK--GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVA 401 (519)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc--CcceeeecccccHHHHHHHHHhcccCCcceEEEcccc
Confidence 233344444444 35689999999999999999999987 7899999999999999999999999999999999999
Q ss_pred cccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCCCcHHHHHHHHHHHHH
Q 006476 363 ESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 427 (643)
Q Consensus 363 ~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~~ 427 (643)
+||||+|+|++|||||+|. +.++|+||+|||||+|+.|.||+|++..+. ..+.+-...+++.
T Consensus 402 aRGLDi~dV~lVInydfP~-~vEdYVHRiGRTGRa~~~G~A~tfft~~~~--~~a~~l~~~l~e~ 463 (519)
T KOG0331|consen 402 ARGLDVPDVDLVINYDFPN-NVEDYVHRIGRTGRAGKKGTAITFFTSDNA--KLARELIKVLREA 463 (519)
T ss_pred cccCCCccccEEEeCCCCC-CHHHHHhhcCccccCCCCceEEEEEeHHHH--HHHHHHHHHHHHc
Confidence 9999999999999999998 999999999999999999999999998753 3344444455443
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.6e-49 Score=440.23 Aligned_cols=326 Identities=22% Similarity=0.235 Sum_probs=270.2
Q ss_pred CCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC---CCeEEEEec
Q 006476 72 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAP 147 (643)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~---g~~vlil~P 147 (643)
.++.++ +.+.+.+.++..|||+|.+||+.+++ ++|++++||||||||++|++|++..+.. +.+++|++|
T Consensus 8 ~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~-------g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~P 80 (460)
T PRK11776 8 TLPLPPALLANLNELGYTEMTPIQAQSLPAILA-------GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCP 80 (460)
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-------CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeC
Confidence 344555 78899999999999999999999975 6899999999999999999999988754 348999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeecc
Q 006476 148 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEE 222 (643)
Q Consensus 148 t~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDEa 222 (643)
|++||.|+++.+......++++++..++|+.+...+ ...+.. .++|+|+||++|.+ .+.++++++||+|||
T Consensus 81 treLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~---~~~l~~-~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEa 156 (460)
T PRK11776 81 TRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQ---IDSLEH-GAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEA 156 (460)
T ss_pred CHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHH---HHHhcC-CCCEEEEChHHHHHHHHcCCccHHHCCEEEEECH
Confidence 999999999999875444557899999998776554 344444 48999999999875 345789999999999
Q ss_pred cccc---h--hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCc-cceeEEEccCCHHHHHHHHHHH
Q 006476 223 QRFG---V--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER-LPIKTHLSAFSKEKVISAIKYE 296 (643)
Q Consensus 223 h~~g---~--~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~-~~v~~~~~~~~~~~~~~~i~~~ 296 (643)
|++. + .....+..++...|++++|||+++....+....+.++..+....... ..+..++.........+.+...
T Consensus 157 d~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 236 (460)
T PRK11776 157 DRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRL 236 (460)
T ss_pred HHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHH
Confidence 9852 2 33556677788899999999998888877777777776665543322 2244444444444444455444
Q ss_pred Hh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEE
Q 006476 297 LD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 374 (643)
Q Consensus 297 l~--~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~V 374 (643)
+. .+++++|||++++.++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 237 l~~~~~~~~lVF~~t~~~~~~l~~~L~~~--~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~V 314 (460)
T PRK11776 237 LLHHQPESCVVFCNTKKECQEVADALNAQ--GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAV 314 (460)
T ss_pred HHhcCCCceEEEECCHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeE
Confidence 43 3478999999999999999999988 8899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 375 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 375 I~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
|++|.|. +..+|+||+||+||.|+.|.||+|+++++
T Consensus 315 I~~d~p~-~~~~yiqR~GRtGR~g~~G~ai~l~~~~e 350 (460)
T PRK11776 315 INYELAR-DPEVHVHRIGRTGRAGSKGLALSLVAPEE 350 (460)
T ss_pred EEecCCC-CHhHhhhhcccccCCCCcceEEEEEchhH
Confidence 9999997 99999999999999999999999998764
No 9
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-50 Score=407.34 Aligned_cols=323 Identities=20% Similarity=0.213 Sum_probs=269.9
Q ss_pred CCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC---CeEEEEec
Q 006476 72 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG---KQAMVLAP 147 (643)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g---~~vlil~P 147 (643)
.+...+ +.+...+.+.-.||++|.+|||.++. ++|+|..|.||||||.+|++|+++.+-.. ..++||+|
T Consensus 65 dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~-------g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtP 137 (476)
T KOG0330|consen 65 DLGVHPELLEACQELGWKKPTKIQSEAIPVALG-------GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTP 137 (476)
T ss_pred hcCcCHHHHHHHHHhCcCCCchhhhhhcchhhC-------CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecC
Confidence 344555 88999999988999999999999975 78999999999999999999999987653 58999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccc------ccCccceEEeec
Q 006476 148 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV------VYNNLGLLVVDE 221 (643)
Q Consensus 148 t~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~------~~~~l~llViDE 221 (643)
||+||.|+.+.|.. ++...|+++.++.|+.+...+...+ . .+++|+|+||++|.+.+ .++.+.++|+||
T Consensus 138 tRELA~QI~e~fe~-Lg~~iglr~~~lvGG~~m~~q~~~L---~-kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 138 TRELAQQIAEQFEA-LGSGIGLRVAVLVGGMDMMLQANQL---S-KKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred cHHHHHHHHHHHHH-hccccCeEEEEEecCchHHHHHHHh---h-cCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 99999999999986 7666689999999988876644433 2 46999999999998654 467899999999
Q ss_pred cccc-----chhHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCcc--ceeE-EE--ccCCHHHHHH
Q 006476 222 EQRF-----GVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL--PIKT-HL--SAFSKEKVIS 291 (643)
Q Consensus 222 ah~~-----g~~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~--~v~~-~~--~~~~~~~~~~ 291 (643)
||++ +......++.++...|++++|||++..+..+....+.++..+.++..... .+.+ |+ .....+..+-
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV 292 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLV 292 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHH
Confidence 9995 34445678888999999999999999888887777777777766433221 1111 21 1112223333
Q ss_pred HHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCC
Q 006476 292 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 371 (643)
Q Consensus 292 ~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v 371 (643)
.+.++. .|..++|||++..+.+.++-.|..+ ++.+..+||+|++..|.-.++.|++|..+||||||+++||+|+|.|
T Consensus 293 ~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~l--g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~V 369 (476)
T KOG0330|consen 293 YLLNEL-AGNSVIVFCNTCNTTRFLALLLRNL--GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHV 369 (476)
T ss_pred HHHHhh-cCCcEEEEEeccchHHHHHHHHHhc--CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCc
Confidence 333333 3589999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCC
Q 006476 372 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 372 ~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~ 410 (643)
++|||||.|. +..+|+||+||+||+|+.|.++.+++..
T Consensus 370 d~VVNyDiP~-~skDYIHRvGRtaRaGrsG~~ItlVtqy 407 (476)
T KOG0330|consen 370 DVVVNYDIPT-HSKDYIHRVGRTARAGRSGKAITLVTQY 407 (476)
T ss_pred eEEEecCCCC-cHHHHHHHcccccccCCCcceEEEEehh
Confidence 9999999998 8899999999999999999999999864
No 10
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-49 Score=436.94 Aligned_cols=323 Identities=24% Similarity=0.289 Sum_probs=274.3
Q ss_pred CCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC--C-C-e-EEEEe
Q 006476 73 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--G-K-Q-AMVLA 146 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~--g-~-~-vlil~ 146 (643)
+..++ +++.+.+.++..|||+|.++||.++. ++|++++++||||||.+|++|+++.+.. . . . +||++
T Consensus 34 l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~-------g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~ 106 (513)
T COG0513 34 LGLSPELLQALKDLGFEEPTPIQLAAIPLILA-------GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILA 106 (513)
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEEC
Confidence 34444 88999999999999999999999986 5899999999999999999999998762 2 1 2 99999
Q ss_pred ccHHHHHHHHHHHHHHhcCCC-CceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEee
Q 006476 147 PTIVLAKQHFDVVSERFSKYP-DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVD 220 (643)
Q Consensus 147 Pt~~La~Q~~~~~~~~~~~~~-~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViD 220 (643)
|||+||.|+++.+.. ++.+. ++++..++|+.+...+. ..++.| +|||||||++|.+. +.++++.++|+|
T Consensus 107 PTRELA~Qi~~~~~~-~~~~~~~~~~~~i~GG~~~~~q~---~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 107 PTRELAVQIAEELRK-LGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred CCHHHHHHHHHHHHH-HHhhcCCccEEEEECCCCHHHHH---HHHhcC-CCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 999999999999986 66665 78999999988776643 556667 99999999999864 456788999999
Q ss_pred ccccc---chh--HHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCc----cceeEEEccCCHHH-HH
Q 006476 221 EEQRF---GVK--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER----LPIKTHLSAFSKEK-VI 290 (643)
Q Consensus 221 Eah~~---g~~--~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~----~~v~~~~~~~~~~~-~~ 290 (643)
|||+| |+. ....+...+.+.|++++|||.+......+...+.++..+...+... ..+.+++....... ..
T Consensus 182 EADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~ 261 (513)
T COG0513 182 EADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKL 261 (513)
T ss_pred cHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHH
Confidence 99995 552 3455677778999999999999988888888888887776653332 34555555544333 55
Q ss_pred HHHHHHHhc--CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccc
Q 006476 291 SAIKYELDR--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368 (643)
Q Consensus 291 ~~i~~~l~~--~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDi 368 (643)
..+...+.. ..+++|||+++..++.++..|... |+++..+||+|++.+|.++++.|++|+.+||||||+++||||+
T Consensus 262 ~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~--g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi 339 (513)
T COG0513 262 ELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR--GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDI 339 (513)
T ss_pred HHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC--CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCc
Confidence 555555542 357999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCC
Q 006476 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 369 p~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~ 410 (643)
|++++|||||.|. +.+.|+||+||+||+|+.|.++.|+++.
T Consensus 340 ~~v~~VinyD~p~-~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 340 PDVSHVINYDLPL-DPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred cccceeEEccCCC-CHHHheeccCccccCCCCCeEEEEeCcH
Confidence 9999999999997 9999999999999999999999999873
No 11
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.6e-49 Score=447.37 Aligned_cols=325 Identities=20% Similarity=0.219 Sum_probs=264.9
Q ss_pred CCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC---CCeEEEEecc
Q 006476 73 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPT 148 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~---g~~vlil~Pt 148 (643)
+..++ +++.+.+.++.+|||+|.+||+.+++ ++|+|++||||||||++|++|++..+.. ++++|||+||
T Consensus 11 l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~-------g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PT 83 (629)
T PRK11634 11 LGLKAPILEALNDLGYEKPSPIQAECIPHLLN-------GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPT 83 (629)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHc-------CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCc
Confidence 33444 88899999999999999999999975 5799999999999999999999877643 4689999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEeeccc
Q 006476 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQ 223 (643)
Q Consensus 149 ~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViDEah 223 (643)
++||.|+++.+......++++++..++|+.+... ++..+..+ ++|+|+||+++.+. +.++++++||+||||
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~---q~~~l~~~-~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV---QLRALRQG-PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHH---HHHHhcCC-CCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999987655566899999999876544 34444444 89999999988753 467899999999999
Q ss_pred ccc---h--hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCC--ccceeEEEccCCHHHHHHHHHHH
Q 006476 224 RFG---V--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSAFSKEKVISAIKYE 296 (643)
Q Consensus 224 ~~g---~--~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~--~~~v~~~~~~~~~~~~~~~i~~~ 296 (643)
++. + .....+..++...|++++|||+++........++.++..+.+.... ...+...+.........+++.+.
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~ 239 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHH
Confidence 863 2 2234556777889999999999887777777777776665543322 22233333333332333444444
Q ss_pred Hh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEE
Q 006476 297 LD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 374 (643)
Q Consensus 297 l~--~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~V 374 (643)
+. ...+++|||+++..++.+++.|... ++.+..+||+|++.+|++++++|++|+++|||||+++++|||+|++++|
T Consensus 240 L~~~~~~~~IVF~~tk~~a~~l~~~L~~~--g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 240 LEAEDFDAAIIFVRTKNATLEVAEALERN--GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHhcCCCCEEEEeccHHHHHHHHHHHHhC--CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 43 3368999999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 375 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 375 I~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
|+||.|. +..+|+||+|||||.|+.|.|++|+++.+
T Consensus 318 I~~d~P~-~~e~yvqRiGRtGRaGr~G~ai~~v~~~e 353 (629)
T PRK11634 318 VNYDIPM-DSESYVHRIGRTGRAGRAGRALLFVENRE 353 (629)
T ss_pred EEeCCCC-CHHHHHHHhccccCCCCcceEEEEechHH
Confidence 9999997 99999999999999999999999998653
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.9e-48 Score=423.22 Aligned_cols=325 Identities=20% Similarity=0.246 Sum_probs=260.7
Q ss_pred CCCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH----------CC
Q 006476 71 PPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS----------AG 139 (643)
Q Consensus 71 ~~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~----------~g 139 (643)
..++.++ +.+.+.+.++..|||+|.+||+.+++ ++|++++||||||||++|++|++..+. .+
T Consensus 11 ~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~-------g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~ 83 (423)
T PRK04837 11 SDFALHPQVVEALEKKGFHNCTPIQALALPLTLA-------GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQ 83 (423)
T ss_pred hhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCC
Confidence 3455665 88999999999999999999999975 689999999999999999999987663 24
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCcc
Q 006476 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNL 214 (643)
Q Consensus 140 ~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l 214 (643)
++++||+||++||.|+++.+.. +....++++..++|+.+.... ...+.. .++|+||||++|.+ .+.++++
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~-l~~~~~~~v~~~~gg~~~~~~---~~~l~~-~~~IlV~TP~~l~~~l~~~~~~l~~v 158 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEP-LAQATGLKLGLAYGGDGYDKQ---LKVLES-GVDILIGTTGRLIDYAKQNHINLGAI 158 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHH-HhccCCceEEEEECCCCHHHH---HHHhcC-CCCEEEECHHHHHHHHHcCCcccccc
Confidence 6899999999999999999987 444447999999997665443 334444 48999999998864 3467899
Q ss_pred ceEEeecccccc---h--hHHHHHHhcC--CCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCc--cceeEEEccCC
Q 006476 215 GLLVVDEEQRFG---V--KQKEKIASFK--ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAFS 285 (643)
Q Consensus 215 ~llViDEah~~g---~--~~~~~l~~~~--~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~--~~v~~~~~~~~ 285 (643)
++|||||||++. + .....+..++ ...+.+++|||++..........+.++..+...+... ..+...+...+
T Consensus 159 ~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~ 238 (423)
T PRK04837 159 QVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPS 238 (423)
T ss_pred cEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCC
Confidence 999999999863 2 1223344443 2456789999998887777777777776665543322 12322222223
Q ss_pred HHHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccc
Q 006476 286 KEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 363 (643)
Q Consensus 286 ~~~~~~~i~~~l~--~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~ 363 (643)
.......+...+. ...+++|||+++..++.+++.|... ++++..+||+|++.+|..++++|++|+++|||||++++
T Consensus 239 ~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~ 316 (423)
T PRK04837 239 NEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD--GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAA 316 (423)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC--CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhh
Confidence 3333444444443 3579999999999999999999987 89999999999999999999999999999999999999
Q ss_pred ccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCC
Q 006476 364 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 364 ~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~ 410 (643)
+|||+|++++||++|+|. +..+|+||+||+||.|+.|.|++|++++
T Consensus 317 rGiDip~v~~VI~~d~P~-s~~~yiqR~GR~gR~G~~G~ai~~~~~~ 362 (423)
T PRK04837 317 RGLHIPAVTHVFNYDLPD-DCEDYVHRIGRTGRAGASGHSISLACEE 362 (423)
T ss_pred cCCCccccCEEEEeCCCC-chhheEeccccccCCCCCeeEEEEeCHH
Confidence 999999999999999997 9999999999999999999999999765
No 13
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3e-47 Score=427.64 Aligned_cols=319 Identities=20% Similarity=0.248 Sum_probs=255.6
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH--------CCCeEEEEeccH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--------AGKQAMVLAPTI 149 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~--------~g~~vlil~Pt~ 149 (643)
+.+.+.+.++..|||+|.+|||.+++ ++|+|+++|||||||++|++|++..+. .++++|||+||+
T Consensus 141 l~~~l~~~g~~~pt~iQ~~aip~~l~-------G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTr 213 (545)
T PTZ00110 141 ILKSLKNAGFTEPTPIQVQGWPIALS-------GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTR 213 (545)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhc-------CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChH
Confidence 77889999999999999999999975 689999999999999999999887653 257899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEeecccc
Q 006476 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQR 224 (643)
Q Consensus 150 ~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViDEah~ 224 (643)
+||.|+++.+.+ |+...++++..++|+.+... +...+..+ ++|+|+||++|.+. ..++++++|||||||+
T Consensus 214 eLa~Qi~~~~~~-~~~~~~i~~~~~~gg~~~~~---q~~~l~~~-~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~ 288 (545)
T PTZ00110 214 ELAEQIREQCNK-FGASSKIRNTVAYGGVPKRG---QIYALRRG-VEILIACPGRLIDFLESNVTNLRRVTYLVLDEADR 288 (545)
T ss_pred HHHHHHHHHHHH-HhcccCccEEEEeCCCCHHH---HHHHHHcC-CCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHh
Confidence 999999999987 55555788999998776544 34455555 89999999988653 3568899999999998
Q ss_pred cc---h--hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCC-cceeeCCCCC---ccceeEEEccCCH----HHHHH
Q 006476 225 FG---V--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD-ASLISTPPPE---RLPIKTHLSAFSK----EKVIS 291 (643)
Q Consensus 225 ~g---~--~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~-~~~i~~~~~~---~~~v~~~~~~~~~----~~~~~ 291 (643)
+. + .....+..++++.|++++|||++.....++...+.+ +..+...... ...+...+..... ..+..
T Consensus 289 mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ 368 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKM 368 (545)
T ss_pred hhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHH
Confidence 63 2 234556667889999999999877666555444432 3222221111 1123332222221 22333
Q ss_pred HHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCC
Q 006476 292 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 371 (643)
Q Consensus 292 ~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v 371 (643)
.+......++++||||++++.++.++..|+.. ++.+..+||+|++.+|+.++++|++|+.+|||||+++++|||+|++
T Consensus 369 ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~--g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v 446 (545)
T PTZ00110 369 LLQRIMRDGDKILIFVETKKGADFLTKELRLD--GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDV 446 (545)
T ss_pred HHHHhcccCCeEEEEecChHHHHHHHHHHHHc--CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccC
Confidence 33333336789999999999999999999876 8899999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 372 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 372 ~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
++||++|.|. ++.+|+||+||+||.|+.|.||+|+++++
T Consensus 447 ~~VI~~d~P~-s~~~yvqRiGRtGR~G~~G~ai~~~~~~~ 485 (545)
T PTZ00110 447 KYVINFDFPN-QIEDYVHRIGRTGRAGAKGASYTFLTPDK 485 (545)
T ss_pred CEEEEeCCCC-CHHHHHHHhcccccCCCCceEEEEECcch
Confidence 9999999998 99999999999999999999999999875
No 14
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4e-47 Score=419.86 Aligned_cols=324 Identities=22% Similarity=0.252 Sum_probs=262.1
Q ss_pred CCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC---------CCeE
Q 006476 73 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---------GKQA 142 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~---------g~~v 142 (643)
++.++ +.+.+.+.++..|||+|.+||+.+++ ++|+++++|||||||++|++|++..+.. ..++
T Consensus 6 l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~-------g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~a 78 (456)
T PRK10590 6 LGLSPDILRAVAEQGYREPTPIQQQAIPAVLE-------GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRA 78 (456)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceE
Confidence 34444 88999999999999999999999975 5899999999999999999999987643 2379
Q ss_pred EEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceE
Q 006476 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLL 217 (643)
Q Consensus 143 lil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~ll 217 (643)
|||+||++||.|+++.+... ..+.++++..++|+.+...+ +..+. +.++|+|+||++|.+ .+.++++++|
T Consensus 79 Lil~PtreLa~Qi~~~~~~~-~~~~~~~~~~~~gg~~~~~~---~~~l~-~~~~IiV~TP~rL~~~~~~~~~~l~~v~~l 153 (456)
T PRK10590 79 LILTPTRELAAQIGENVRDY-SKYLNIRSLVVFGGVSINPQ---MMKLR-GGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153 (456)
T ss_pred EEEeCcHHHHHHHHHHHHHH-hccCCCEEEEEECCcCHHHH---HHHHc-CCCcEEEEChHHHHHHHHcCCcccccceEE
Confidence 99999999999999999874 44447899899987765543 23333 559999999998864 3457899999
Q ss_pred Eeecccccch-----hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCC--ccceeEEEccCCHHHHH
Q 006476 218 VVDEEQRFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSAFSKEKVI 290 (643)
Q Consensus 218 ViDEah~~g~-----~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~--~~~v~~~~~~~~~~~~~ 290 (643)
||||||++.. .....+..++...|++++|||+.+....+....+.++..+...... ...+..++...+.....
T Consensus 154 ViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 233 (456)
T PRK10590 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKR 233 (456)
T ss_pred EeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHH
Confidence 9999998632 2344566677888999999999887766666666666555432221 22334444444444444
Q ss_pred HHHHHHHhc--CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccc
Q 006476 291 SAIKYELDR--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368 (643)
Q Consensus 291 ~~i~~~l~~--~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDi 368 (643)
..+...+.. ..+++|||+++..++.+++.|... ++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+
T Consensus 234 ~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDi 311 (456)
T PRK10590 234 ELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD--GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311 (456)
T ss_pred HHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCc
Confidence 444444433 368999999999999999999887 8899999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 369 p~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
|++++||+|+.|. +..+|+||+||+||.|..|.|++|+..++
T Consensus 312 p~v~~VI~~~~P~-~~~~yvqR~GRaGR~g~~G~ai~l~~~~d 353 (456)
T PRK10590 312 EELPHVVNYELPN-VPEDYVHRIGRTGRAAATGEALSLVCVDE 353 (456)
T ss_pred ccCCEEEEeCCCC-CHHHhhhhccccccCCCCeeEEEEecHHH
Confidence 9999999999998 89999999999999999999999998764
No 15
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-47 Score=389.31 Aligned_cols=325 Identities=21% Similarity=0.293 Sum_probs=278.5
Q ss_pred CCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC------CC--eEEEE
Q 006476 75 KNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA------GK--QAMVL 145 (643)
Q Consensus 75 ~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~------g~--~vlil 145 (643)
..+ +.+.+.+.++-..||.|..+||.+++ ++|+++.++||||||++|++|++..+.+ .. .++|+
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll~-------~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalII 85 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLLK-------NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALII 85 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHhc-------CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEe
Confidence 335 77889999899999999999999976 5899999999999999999999998832 12 68999
Q ss_pred eccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-------cccCccceEE
Q 006476 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------VVYNNLGLLV 218 (643)
Q Consensus 146 ~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-------~~~~~l~llV 218 (643)
+|||+||.|+.+........++++++.++.|+.+.. +.+..+++..++|+||||++|.+. +.++++.++|
T Consensus 86 sPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~---~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 86 SPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVE---EDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILV 162 (567)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHH---HHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEE
Confidence 999999999999998877777889999999986554 366777777799999999999752 4567999999
Q ss_pred eeccccc---chh--HHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCc--cc--eeEEEccCCHHHH
Q 006476 219 VDEEQRF---GVK--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LP--IKTHLSAFSKEKV 289 (643)
Q Consensus 219 iDEah~~---g~~--~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~--~~--v~~~~~~~~~~~~ 289 (643)
+||||++ |+. ....|..++.++++=++|||.......+...|++++..+.+..... .| ...++........
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 9999984 663 3567888888999999999999988899999999998887654443 33 4455555555555
Q ss_pred HHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccccccc
Q 006476 290 ISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 367 (643)
Q Consensus 290 ~~~i~~~l~--~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiD 367 (643)
...+...+. ...+++||+++...++..+..+....+...+..+||+|++.+|..+++.|.+..-.+|+|||+++||||
T Consensus 243 ~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 243 LSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 555544443 348999999999999999999999888899999999999999999999999988889999999999999
Q ss_pred ccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCC
Q 006476 368 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 368 ip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~ 410 (643)
||++++||++|+|. +.+.+.||+||+||.|+.|.|++|..+.
T Consensus 323 ip~iD~VvQ~DpP~-~~~~FvHR~GRTaR~gr~G~Aivfl~p~ 364 (567)
T KOG0345|consen 323 IPGIDLVVQFDPPK-DPSSFVHRCGRTARAGREGNAIVFLNPR 364 (567)
T ss_pred CCCceEEEecCCCC-ChhHHHhhcchhhhccCccceEEEeccc
Confidence 99999999999998 9999999999999999999999999875
No 16
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.3e-46 Score=417.82 Aligned_cols=320 Identities=23% Similarity=0.276 Sum_probs=252.7
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH----------CCCeEEEEec
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS----------AGKQAMVLAP 147 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~----------~g~~vlil~P 147 (643)
+++.+.+.++..|||+|.+||+.+++ ++|+++++|||||||++|++|++..+. .+++++||+|
T Consensus 132 l~~~L~~~g~~~ptpiQ~~aip~il~-------g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~P 204 (518)
T PLN00206 132 LLLNLETAGYEFPTPIQMQAIPAALS-------GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTP 204 (518)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhc-------CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeC
Confidence 78889988889999999999999975 589999999999999999999987653 3578999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeecc
Q 006476 148 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEE 222 (643)
Q Consensus 148 t~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDEa 222 (643)
|++||.|+++.++. +....++++..+.|+..... ....+..| ++|+|+||++|.+ .+.++++++||+|||
T Consensus 205 TreLa~Qi~~~~~~-l~~~~~~~~~~~~gG~~~~~---q~~~l~~~-~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEa 279 (518)
T PLN00206 205 TRELCVQVEDQAKV-LGKGLPFKTALVVGGDAMPQ---QLYRIQQG-VELIVGTPGRLIDLLSKHDIELDNVSVLVLDEV 279 (518)
T ss_pred CHHHHHHHHHHHHH-HhCCCCceEEEEECCcchHH---HHHHhcCC-CCEEEECHHHHHHHHHcCCccchheeEEEeecH
Confidence 99999999999886 44433578888887655443 34455555 8999999998854 346789999999999
Q ss_pred cccc---hh-HHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCc--cceeEEEccCCHH----HHHHH
Q 006476 223 QRFG---VK-QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAFSKE----KVISA 292 (643)
Q Consensus 223 h~~g---~~-~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~--~~v~~~~~~~~~~----~~~~~ 292 (643)
|++. +. +...+....++.|++++|||+++....+......++..+....... ..+...+...... .+.+.
T Consensus 280 d~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~ 359 (518)
T PLN00206 280 DCMLERGFRDQVMQIFQALSQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDI 359 (518)
T ss_pred HHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHH
Confidence 9863 32 2222322336789999999998887777666666666665443322 1222222222211 22333
Q ss_pred HHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCC
Q 006476 293 IKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 372 (643)
Q Consensus 293 i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~ 372 (643)
+.......++++|||+++..++.+++.|... .++++..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 360 l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~-~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~ 438 (518)
T PLN00206 360 LKSKQHFKPPAVVFVSSRLGADLLANAITVV-TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVR 438 (518)
T ss_pred HHhhcccCCCEEEEcCCchhHHHHHHHHhhc-cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCC
Confidence 3222223468999999999999999999754 278899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 373 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 373 ~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
+||++|+|. +..+|+||+|||||.|..|.|++|+++++
T Consensus 439 ~VI~~d~P~-s~~~yihRiGRaGR~g~~G~ai~f~~~~~ 476 (518)
T PLN00206 439 QVIIFDMPN-TIKEYIHQIGRASRMGEKGTAIVFVNEED 476 (518)
T ss_pred EEEEeCCCC-CHHHHHHhccccccCCCCeEEEEEEchhH
Confidence 999999998 99999999999999999999999998753
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.1e-46 Score=420.95 Aligned_cols=325 Identities=19% Similarity=0.211 Sum_probs=259.5
Q ss_pred CCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC----------CC
Q 006476 72 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----------GK 140 (643)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~----------g~ 140 (643)
.++.++ +++.+.+.++..|||+|.+||+.+++ ++|+++++|||||||++|++|++..+.. +.
T Consensus 13 ~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~-------G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ 85 (572)
T PRK04537 13 SFDLHPALLAGLESAGFTRCTPIQALTLPVALP-------GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDP 85 (572)
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCc
Confidence 344555 88899999999999999999999975 6899999999999999999999887632 36
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc------cccCcc
Q 006476 141 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNL 214 (643)
Q Consensus 141 ~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~------~~~~~l 214 (643)
++|||+||++||.|+++.+.. |....++++..++|+.+...+...+ . +.++|+|+||++|.+. +.+.++
T Consensus 86 raLIl~PTreLa~Qi~~~~~~-l~~~~~i~v~~l~Gg~~~~~q~~~l---~-~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVK-FGADLGLRFALVYGGVDYDKQRELL---Q-QGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHH-HhccCCceEEEEECCCCHHHHHHHH---h-CCCCEEEECHHHHHHHHHhccccchhhe
Confidence 899999999999999999987 5544579999999987766543333 3 4589999999988653 346788
Q ss_pred ceEEeecccccc---h--hHHHHHHhcCC--CceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCc--cceeEEEccCC
Q 006476 215 GLLVVDEEQRFG---V--KQKEKIASFKI--SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAFS 285 (643)
Q Consensus 215 ~llViDEah~~g---~--~~~~~l~~~~~--~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~--~~v~~~~~~~~ 285 (643)
++|||||||++. + .....+..++. +.|++++|||+..+........+.++..+....... ..+...+....
T Consensus 161 ~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~ 240 (572)
T PRK04537 161 EICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA 240 (572)
T ss_pred eeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecC
Confidence 999999999862 2 22233444443 689999999998887777766666554333222111 12233332233
Q ss_pred HHHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccc
Q 006476 286 KEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 363 (643)
Q Consensus 286 ~~~~~~~i~~~l~--~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~ 363 (643)
.......+...+. .+.+++||||++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+++|||||++++
T Consensus 241 ~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~--g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~a 318 (572)
T PRK04537 241 DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH--GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAA 318 (572)
T ss_pred HHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhh
Confidence 3333344444443 3579999999999999999999987 88999999999999999999999999999999999999
Q ss_pred ccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 364 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 364 ~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
+|||+|++++||+||.|. +..+|+||+||+||.|+.|.|++|+++.+
T Consensus 319 rGIDip~V~~VInyd~P~-s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 319 RGLHIDGVKYVYNYDLPF-DAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred cCCCccCCCEEEEcCCCC-CHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 999999999999999996 99999999999999999999999997654
No 18
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4.1e-46 Score=388.39 Aligned_cols=320 Identities=23% Similarity=0.300 Sum_probs=267.9
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH------------CCCeEEEE
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS------------AGKQAMVL 145 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~------------~g~~vlil 145 (643)
+++.+.+.++..|||+|.+|||..+. .+|.|..+.||||||.+|++|++..+. .|+.++++
T Consensus 256 ~l~~I~~~~y~eptpIqR~aipl~lQ-------~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiil 328 (673)
T KOG0333|consen 256 LLSVIKKPGYKEPTPIQRQAIPLGLQ-------NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIIL 328 (673)
T ss_pred HHHHHHhcCCCCCchHHHhhccchhc-------cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeee
Confidence 67788888899999999999997764 589999999999999999999886642 37899999
Q ss_pred eccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEee
Q 006476 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVD 220 (643)
Q Consensus 146 ~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViD 220 (643)
+|||+||+|+.++-.+ |+...++++..+.|+.+..++.- .+..| ++|+|+||++|.+. +.++++.++|+|
T Consensus 329 aptReLaqqIeeEt~k-f~~~lg~r~vsvigg~s~EEq~f---qls~g-ceiviatPgrLid~Lenr~lvl~qctyvvld 403 (673)
T KOG0333|consen 329 APTRELAQQIEEETNK-FGKPLGIRTVSVIGGLSFEEQGF---QLSMG-CEIVIATPGRLIDSLENRYLVLNQCTYVVLD 403 (673)
T ss_pred chHHHHHHHHHHHHHH-hcccccceEEEEecccchhhhhh---hhhcc-ceeeecCchHHHHHHHHHHHHhccCceEecc
Confidence 9999999999999876 66666899999999887766543 34556 99999999999763 456889999999
Q ss_pred ccccc---chh--HHHHHHhcC-------------------------CCceEEEeccCCChHhHHHHHhcCCCcceeeCC
Q 006476 221 EEQRF---GVK--QKEKIASFK-------------------------ISVDVLTLSATPIPRTLYLALTGFRDASLISTP 270 (643)
Q Consensus 221 Eah~~---g~~--~~~~l~~~~-------------------------~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~ 270 (643)
||++| |+. ....|..++ .-.|.++||||++|....++..+++++.++...
T Consensus 404 eadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig 483 (673)
T KOG0333|consen 404 EADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIG 483 (673)
T ss_pred chhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEec
Confidence 99985 442 223333331 127899999999999999999999999888764
Q ss_pred CCCcc--ceeEEEccCCHHHHHHHHHHHHhcC--CeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHH
Q 006476 271 PPERL--PIKTHLSAFSKEKVISAIKYELDRG--GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETME 346 (643)
Q Consensus 271 ~~~~~--~v~~~~~~~~~~~~~~~i~~~l~~~--~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~ 346 (643)
..... -+.+.+...+.+.....+...+..+ ..++||+|+++.|+.+++.|... ++++..+||+-++++|+.+++
T Consensus 484 ~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~--g~~~~tlHg~k~qeQRe~aL~ 561 (673)
T KOG0333|consen 484 SAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA--GYKVTTLHGGKSQEQRENALA 561 (673)
T ss_pred cCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc--cceEEEeeCCccHHHHHHHHH
Confidence 33221 2344444444444466666666554 68999999999999999999998 899999999999999999999
Q ss_pred HHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCC
Q 006476 347 KFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 347 ~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~ 412 (643)
.|++|..+||||||++++|||||||.+|||||++. ++..|.||+||+||+|+.|.|+.|+++++.
T Consensus 562 ~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmak-sieDYtHRIGRTgRAGk~GtaiSflt~~dt 626 (673)
T KOG0333|consen 562 DFREGTGDILVATDVAGRGIDIPNVSLVINYDMAK-SIEDYTHRIGRTGRAGKSGTAISFLTPADT 626 (673)
T ss_pred HHHhcCCCEEEEecccccCCCCCccceeeecchhh-hHHHHHHHhccccccccCceeEEEeccchh
Confidence 99999999999999999999999999999999998 999999999999999999999999998863
No 19
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-47 Score=393.28 Aligned_cols=318 Identities=23% Similarity=0.275 Sum_probs=267.0
Q ss_pred hhHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC------CCeEEEEeccHH
Q 006476 77 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA------GKQAMVLAPTIV 150 (643)
Q Consensus 77 ~~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~------g~~vlil~Pt~~ 150 (643)
|+++.+...++-.|||+|..+||..+- ++|+..||.||||||.+|++|++..+.- -.+||||+|||+
T Consensus 191 PlLka~~~lGy~~PTpIQ~a~IPvall-------gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRE 263 (691)
T KOG0338|consen 191 PLLKACSTLGYKKPTPIQVATIPVALL-------GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRE 263 (691)
T ss_pred HHHHHHHhcCCCCCCchhhhcccHHhh-------cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHH
Confidence 478889999999999999999997764 6899999999999999999999988643 248999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc------cccCccceEEeecccc
Q 006476 151 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNLGLLVVDEEQR 224 (643)
Q Consensus 151 La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~------~~~~~l~llViDEah~ 224 (643)
||.|++...++ ++.|..+.|+++.|+.+-..+...++ + .+||||+||++|.++ +.+.++.++|+|||||
T Consensus 264 LaiQv~sV~~q-laqFt~I~~~L~vGGL~lk~QE~~LR---s-~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 264 LAIQVHSVTKQ-LAQFTDITVGLAVGGLDLKAQEAVLR---S-RPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred HHHHHHHHHHH-HHhhccceeeeeecCccHHHHHHHHh---h-CCCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 99999999986 78888899999999998887766553 3 499999999999764 4568999999999999
Q ss_pred c---ch--hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCccceeE---EEc-----cCCHHHHH-
Q 006476 225 F---GV--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKT---HLS-----AFSKEKVI- 290 (643)
Q Consensus 225 ~---g~--~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~---~~~-----~~~~~~~~- 290 (643)
| |+ ...+.+...+.++|.++||||+......++...+..+.-+...|+...+... ++. +...+.++
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~ 418 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLA 418 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHH
Confidence 7 33 4467777888999999999999998888888888888777766655433211 111 11122233
Q ss_pred HHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccC
Q 006476 291 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370 (643)
Q Consensus 291 ~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~ 370 (643)
..+.+.. ...++||+.+.+.+.++.-.|--+ |++++-+||.+++.+|-+.++.|++++++||||||+++||+||++
T Consensus 419 ~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLl--gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~g 494 (691)
T KOG0338|consen 419 SLITRTF--QDRTIVFVRTKKQAHRLRILLGLL--GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEG 494 (691)
T ss_pred HHHHHhc--ccceEEEEehHHHHHHHHHHHHHh--hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccc
Confidence 3333333 467899999999998887777666 899999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 371 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 371 v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
|.+||||++|. +...|+||+||+.|+|+.|.++.|+..++
T Consensus 495 V~tVINy~mP~-t~e~Y~HRVGRTARAGRaGrsVtlvgE~d 534 (691)
T KOG0338|consen 495 VQTVINYAMPK-TIEHYLHRVGRTARAGRAGRSVTLVGESD 534 (691)
T ss_pred eeEEEeccCch-hHHHHHHHhhhhhhcccCcceEEEecccc
Confidence 99999999998 99999999999999999999999998763
No 20
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.4e-45 Score=405.86 Aligned_cols=324 Identities=19% Similarity=0.223 Sum_probs=258.6
Q ss_pred CCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC-------CCeEEE
Q 006476 73 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-------GKQAMV 144 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-------g~~vli 144 (643)
+..++ +++.+.+.++..|||+|.+||+.+++ ++|+++++|||+|||++|++|++..+.+ +.+++|
T Consensus 6 l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~-------g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~li 78 (434)
T PRK11192 6 LELDESLLEALQDKGYTRPTAIQAEAIPPALD-------GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILI 78 (434)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEE
Confidence 44455 88999999999999999999999975 5789999999999999999999987642 368999
Q ss_pred EeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEe
Q 006476 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVV 219 (643)
Q Consensus 145 l~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llVi 219 (643)
++||++||.|+++.+.. +....++++..++|+.........+ .+.++|+|+||++|.+. +.++++++||+
T Consensus 79 l~Pt~eLa~Q~~~~~~~-l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lVi 153 (434)
T PRK11192 79 LTPTRELAMQVADQARE-LAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAVETLIL 153 (434)
T ss_pred ECCcHHHHHHHHHHHHH-HHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccCCEEEE
Confidence 99999999999999987 5555579999999987766544333 35689999999988753 45688999999
Q ss_pred ecccccc---h--hHHHHHHhcCCCceEEEeccCCChHhH-HHHHhcCCCcceeeCCCCCc--cceeEEEccCC-HHHHH
Q 006476 220 DEEQRFG---V--KQKEKIASFKISVDVLTLSATPIPRTL-YLALTGFRDASLISTPPPER--LPIKTHLSAFS-KEKVI 290 (643)
Q Consensus 220 DEah~~g---~--~~~~~l~~~~~~~~vl~lSATp~~~~~-~~~~~~~~~~~~i~~~~~~~--~~v~~~~~~~~-~~~~~ 290 (643)
||||++. + .........+...|++++|||+..... ......+.++..+...+... ..+..++...+ .....
T Consensus 154 DEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~ 233 (434)
T PRK11192 154 DEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKT 233 (434)
T ss_pred ECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHH
Confidence 9999863 2 122334455667899999999975533 33334444555554443322 22333333222 23344
Q ss_pred HHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccc
Q 006476 291 SAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368 (643)
Q Consensus 291 ~~i~~~l~--~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDi 368 (643)
+.+...+. ..++++|||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+
T Consensus 234 ~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDi 311 (434)
T PRK11192 234 ALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA--GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDI 311 (434)
T ss_pred HHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC--CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccC
Confidence 44444444 3578999999999999999999986 8999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 369 p~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
|++++||++|.|. +...|+||+||+||.|..|.|+++++.++
T Consensus 312 p~v~~VI~~d~p~-s~~~yiqr~GR~gR~g~~g~ai~l~~~~d 353 (434)
T PRK11192 312 DDVSHVINFDMPR-SADTYLHRIGRTGRAGRKGTAISLVEAHD 353 (434)
T ss_pred CCCCEEEEECCCC-CHHHHhhcccccccCCCCceEEEEecHHH
Confidence 9999999999997 99999999999999999999999997654
No 21
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.9e-45 Score=407.40 Aligned_cols=325 Identities=19% Similarity=0.215 Sum_probs=258.6
Q ss_pred CCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC----------CCe
Q 006476 73 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----------GKQ 141 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~----------g~~ 141 (643)
+..++ +.+.+.+.++..|||+|.+||+.+++ ++|+++++|||||||++|++|++..+.. +.+
T Consensus 92 ~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~-------G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 92 FNLAPELMHAIHDLGFPYCTPIQAQVLGYTLA-------GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 44455 88889998888999999999999875 6899999999999999999999887643 358
Q ss_pred EEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccce
Q 006476 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGL 216 (643)
Q Consensus 142 vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~l 216 (643)
++||+||++||.|+++.++. +....++++..++|+.+.... .+.+..+.++|+|+||++|.+ ...++++++
T Consensus 165 aLil~PtreLa~Q~~~~~~~-l~~~~~~~v~~~~gg~~~~~~---~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~ 240 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAA-LTKYTGLNVMTFVGGMDFDKQ---LKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEV 240 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHH-hhccCCCEEEEEEccCChHHH---HHHHhCCCCCEEEECHHHHHHHHHcCCcccccCce
Confidence 99999999999999999987 444447899999987655443 344555679999999999864 345689999
Q ss_pred EEeecccccch----h-HHHHHHhcC--CCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCcc--ceeEEEccCCHH
Q 006476 217 LVVDEEQRFGV----K-QKEKIASFK--ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL--PIKTHLSAFSKE 287 (643)
Q Consensus 217 lViDEah~~g~----~-~~~~l~~~~--~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~--~v~~~~~~~~~~ 287 (643)
|||||+|++.. . ....+.... .+.|++++|||..............++..+...+.... .+..++......
T Consensus 241 lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 320 (475)
T PRK01297 241 MVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGS 320 (475)
T ss_pred EEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecch
Confidence 99999998632 1 223334332 35799999999887777766666666665544333221 222333222222
Q ss_pred HHHHHHHHHHhc--CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccccc
Q 006476 288 KVISAIKYELDR--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 365 (643)
Q Consensus 288 ~~~~~i~~~l~~--~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~G 365 (643)
.....+...+.. ..+++|||++++.++.+++.|... ++.+..+||++++.+|.++++.|++|+++|||||+++++|
T Consensus 321 ~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~G 398 (475)
T PRK01297 321 DKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD--GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRG 398 (475)
T ss_pred hHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccC
Confidence 233333343333 359999999999999999999887 8899999999999999999999999999999999999999
Q ss_pred ccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 366 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 366 iDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
||+|++++||+++.|. +..+|+||+||+||.|+.|.+++|+++++
T Consensus 399 IDi~~v~~VI~~~~P~-s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 399 IHIDGISHVINFTLPE-DPDDYVHRIGRTGRAGASGVSISFAGEDD 443 (475)
T ss_pred CcccCCCEEEEeCCCC-CHHHHHHhhCccCCCCCCceEEEEecHHH
Confidence 9999999999999997 99999999999999999999999998653
No 22
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-46 Score=363.12 Aligned_cols=320 Identities=19% Similarity=0.221 Sum_probs=270.1
Q ss_pred hhHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---CCCeEEEEeccHHHHH
Q 006476 77 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTIVLAK 153 (643)
Q Consensus 77 ~~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---~g~~vlil~Pt~~La~ 153 (643)
++++.+.+.++..|+.+|++||+.|++ ++|+++++..|+|||.+|-..++..+. +..|++||+|||+||.
T Consensus 37 dlLrgiY~yGfekPS~IQqrAi~~Ilk-------GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~ 109 (400)
T KOG0328|consen 37 DLLRGIYAYGFEKPSAIQQRAIPQILK-------GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAV 109 (400)
T ss_pred HHHHHHHHhccCCchHHHhhhhhhhhc-------ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHH
Confidence 378889999999999999999999986 789999999999999998666665543 3569999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEeecccccc--
Q 006476 154 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFG-- 226 (643)
Q Consensus 154 Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViDEah~~g-- 226 (643)
|+.+.+.. ++.+.++++..+.|+.+..+ .++.+..| .+++.|||+++.+. +..+++.++|+||||.+.
T Consensus 110 Qi~~vi~a-lg~~mnvq~hacigg~n~ge---dikkld~G-~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~k 184 (400)
T KOG0328|consen 110 QIQKVILA-LGDYMNVQCHACIGGKNLGE---DIKKLDYG-QHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNK 184 (400)
T ss_pred HHHHHHHH-hcccccceEEEEecCCccch---hhhhhccc-ceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHh
Confidence 99999986 77777899999999776554 45566667 89999999998763 455788999999999863
Q ss_pred -h--hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCcc--ceeEEEccCCHHH-HHHHHHHHHhc-
Q 006476 227 -V--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL--PIKTHLSAFSKEK-VISAIKYELDR- 299 (643)
Q Consensus 227 -~--~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~--~v~~~~~~~~~~~-~~~~i~~~l~~- 299 (643)
+ +.....+.++++.|++++|||.+...+++...++.|+..+-....+.. .+++++.....+. ..+.+......
T Consensus 185 gfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~L 264 (400)
T KOG0328|consen 185 GFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL 264 (400)
T ss_pred hHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhh
Confidence 3 335667888999999999999999999999999998877665433221 2555555555444 34444443322
Q ss_pred -CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEec
Q 006476 300 -GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378 (643)
Q Consensus 300 -~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d 378 (643)
-.|.++|||++..++.+.+.+++. ++.|..+||+|++++|+++|.+|++|+.+||++|++.+||+|+|.++.|||||
T Consensus 265 tItQavIFcnTk~kVdwLtekm~~~--nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYD 342 (400)
T KOG0328|consen 265 TITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYD 342 (400)
T ss_pred ehheEEEEecccchhhHHHHHHHhh--CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecC
Confidence 369999999999999999999988 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 379 ~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
.|. +...|+||+||.||.|+.|.|+-|+..++
T Consensus 343 LP~-nre~YIHRIGRSGRFGRkGvainFVk~~d 374 (400)
T KOG0328|consen 343 LPN-NRELYIHRIGRSGRFGRKGVAINFVKSDD 374 (400)
T ss_pred CCc-cHHHHhhhhccccccCCcceEEEEecHHH
Confidence 998 88999999999999999999999997764
No 23
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-45 Score=382.95 Aligned_cols=346 Identities=21% Similarity=0.260 Sum_probs=285.8
Q ss_pred HHHHHHHHHHHHHHH---cCCCCCCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHH
Q 006476 52 QKMVVDLMELYLHRL---KQKRPPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 127 (643)
Q Consensus 52 ~~~~~~l~~~~~~r~---~~~~~~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~ 127 (643)
++...++..-|+.-. ..++..||.+. ..+.+.+..+..+|.+|..+|+..+. |.|+|..|.||||||++
T Consensus 50 ee~i~~l~~ky~ei~~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~-------G~DvlGAAkTGSGKTLA 122 (758)
T KOG0343|consen 50 EEEIEELKQKYAEIDSTTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQ-------GHDVLGAAKTGSGKTLA 122 (758)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhcc-------CcccccccccCCCceee
Confidence 344455656666543 23445677776 88999999999999999999998875 78999999999999999
Q ss_pred HHHHHHHHHH-------CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEe
Q 006476 128 ALRAIFCVVS-------AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 200 (643)
Q Consensus 128 ~l~~i~~~~~-------~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~ 200 (643)
|+.|+++++- +|--+||+.|||+||.|+++.+.+ .+.+.++.++++.|+.+...... .+ ...+|+||
T Consensus 123 FlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~k-vgk~h~fSaGLiiGG~~~k~E~e---Ri--~~mNILVC 196 (758)
T KOG0343|consen 123 FLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNK-VGKHHDFSAGLIIGGKDVKFELE---RI--SQMNILVC 196 (758)
T ss_pred ehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHH-HhhccccccceeecCchhHHHHH---hh--hcCCeEEe
Confidence 9999998874 367899999999999999999986 78877899999999876543222 22 45899999
Q ss_pred chHhhhcc------cccCccceEEeeccccc---chhH--HHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeC
Q 006476 201 THSLLGSR------VVYNNLGLLVVDEEQRF---GVKQ--KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269 (643)
Q Consensus 201 T~~~L~~~------~~~~~l~llViDEah~~---g~~~--~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~ 269 (643)
||++|+.+ +...++.++|+|||||+ |++. ...+..+++..|+++||||+...+..++...+.|+..+.+
T Consensus 197 TPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsv 276 (758)
T KOG0343|consen 197 TPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSV 276 (758)
T ss_pred chHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEE
Confidence 99999753 23478999999999994 6642 4567888999999999999999988888888899988876
Q ss_pred CCCCcc----ceeEEEccCCHHHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHH
Q 006476 270 PPPERL----PIKTHLSAFSKEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEE 343 (643)
Q Consensus 270 ~~~~~~----~v~~~~~~~~~~~~~~~i~~~l~--~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~ 343 (643)
...... ...+++........++.+...+. ...+.+||+++.+.+..+++.+.++-||.++..+||.|++..|..
T Consensus 277 he~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~e 356 (758)
T KOG0343|consen 277 HENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIE 356 (758)
T ss_pred eccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHH
Confidence 532211 23333333343444444444333 346899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 344 TMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 344 v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
++.+|.....-||+||++++||+|+|.|++||.+|+|. +.++|+||+||+.|.+..|.|+++.+|.+
T Consensus 357 v~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPe-dv~tYIHRvGRtAR~~~~G~sll~L~psE 423 (758)
T KOG0343|consen 357 VYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPE-DVDTYIHRVGRTARYKERGESLLMLTPSE 423 (758)
T ss_pred HHHHHHHhcceEEEeehhhhccCCCcccceEEEecCch-hHHHHHHHhhhhhcccCCCceEEEEcchh
Confidence 99999999999999999999999999999999999998 99999999999999999999999998874
No 24
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.7e-44 Score=393.42 Aligned_cols=324 Identities=20% Similarity=0.239 Sum_probs=258.1
Q ss_pred CCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---CCCeEEEEecc
Q 006476 73 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPT 148 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---~g~~vlil~Pt 148 (643)
++.++ +.+.+.+.++..|||+|.+||+.+++ +.|.++++|||||||++|++|++..+. .+.+++|++||
T Consensus 33 l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~-------~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt 105 (401)
T PTZ00424 33 LKLNEDLLRGIYSYGFEKPSAIQQRGIKPILD-------GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPT 105 (401)
T ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCC
Confidence 34445 77888888888999999999999975 578999999999999999999988765 46789999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeeccc
Q 006476 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQ 223 (643)
Q Consensus 149 ~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDEah 223 (643)
++|+.|+++.+.. +....++.+..+.|+..... .+..+..+ ++|+|+||+.+.+ ...++++++|||||+|
T Consensus 106 ~~L~~Q~~~~~~~-~~~~~~~~~~~~~g~~~~~~---~~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 106 RELAQQIQKVVLA-LGDYLKVRCHACVGGTVVRD---DINKLKAG-VHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred HHHHHHHHHHHHH-HhhhcCceEEEEECCcCHHH---HHHHHcCC-CCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 9999999998886 44444678888888655432 34555555 7999999998764 3457899999999999
Q ss_pred ccch-----hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCC--ccceeEEEccCCH-HHHHHHHHH
Q 006476 224 RFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSAFSK-EKVISAIKY 295 (643)
Q Consensus 224 ~~g~-----~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~--~~~v~~~~~~~~~-~~~~~~i~~ 295 (643)
++.. ...+.++.+.++.|++++|||++..........+.++..+...... ...+..++..... ......+..
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (401)
T PTZ00424 181 EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCD 260 (401)
T ss_pred HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHH
Confidence 8632 2345567778889999999999887766666666665544333221 1222333332222 222333333
Q ss_pred HHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCE
Q 006476 296 ELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 373 (643)
Q Consensus 296 ~l~--~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~ 373 (643)
.+. ...+++|||++++.++.+++.|... +..+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++
T Consensus 261 ~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~--~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~ 338 (401)
T PTZ00424 261 LYETLTITQAIIYCNTRRKVDYLTKKMHER--DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSL 338 (401)
T ss_pred HHHhcCCCeEEEEecCcHHHHHHHHHHHHC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCE
Confidence 332 3468999999999999999999887 889999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 374 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 374 VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
||++|.|. +..+|+||+||+||.|+.|.|+.++++++
T Consensus 339 VI~~~~p~-s~~~y~qr~GRagR~g~~G~~i~l~~~~~ 375 (401)
T PTZ00424 339 VINYDLPA-SPENYIHRIGRSGRFGRKGVAINFVTPDD 375 (401)
T ss_pred EEEECCCC-CHHHEeecccccccCCCCceEEEEEcHHH
Confidence 99999997 99999999999999999999999997763
No 25
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-45 Score=364.75 Aligned_cols=336 Identities=21% Similarity=0.239 Sum_probs=262.9
Q ss_pred CCCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC---CCeEEEEe
Q 006476 71 PPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLA 146 (643)
Q Consensus 71 ~~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~---g~~vlil~ 146 (643)
..+...+ +.+.+.+.+.+.|||+|..|||.|+. |+|+|.||.||||||.+|.+|+++.++. |-.++|++
T Consensus 10 ~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILe-------Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 10 SILGLSPWLVEQLKALGIKKPTPIQQACIPKILE-------GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLT 82 (442)
T ss_pred hhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhc-------ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEec
Confidence 3456667 45789999999999999999999986 7999999999999999999999999876 45899999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccc---------ccCccceE
Q 006476 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV---------VYNNLGLL 217 (643)
Q Consensus 147 Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~---------~~~~l~ll 217 (643)
|||+||.|+.+.|.. +++..++++.+++|+.+.-.+...+ ..++|+||+||+++.+.+ .++++.++
T Consensus 83 PTrELA~QiaEQF~a-lGk~l~lK~~vivGG~d~i~qa~~L----~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkfl 157 (442)
T KOG0340|consen 83 PTRELALQIAEQFIA-LGKLLNLKVSVIVGGTDMIMQAAIL----SDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFL 157 (442)
T ss_pred chHHHHHHHHHHHHH-hcccccceEEEEEccHHHhhhhhhc----ccCCCeEecCccccccccccCCccchhhhhceeeE
Confidence 999999999999986 7777789999999987765543333 246999999999996532 35789999
Q ss_pred Eeecccccchh----H-HHHHHhcCCCceEEEeccCCChHhHHHHHhcCCC--cceeeCCCCCccc---eeEE--EccCC
Q 006476 218 VVDEEQRFGVK----Q-KEKIASFKISVDVLTLSATPIPRTLYLALTGFRD--ASLISTPPPERLP---IKTH--LSAFS 285 (643)
Q Consensus 218 ViDEah~~g~~----~-~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~--~~~i~~~~~~~~~---v~~~--~~~~~ 285 (643)
|+|||+++... + ......++..+|.++||||............... +...+..+....+ .+.+ +....
T Consensus 158 VlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~v 237 (442)
T KOG0340|consen 158 VLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDV 237 (442)
T ss_pred EecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhh
Confidence 99999997321 2 2234455667899999999755444333222221 1122221111110 0011 11112
Q ss_pred HHHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccc
Q 006476 286 KEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 363 (643)
Q Consensus 286 ~~~~~~~i~~~l~--~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~ 363 (643)
.+.+.-.+.+... ..+.+++|+|+..+|+.++..|+.+ ++++..+||.|++.+|-..+.+|+++..+||||||+++
T Consensus 238 kdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l--e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAs 315 (442)
T KOG0340|consen 238 KDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL--EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVAS 315 (442)
T ss_pred hHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh--ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhh
Confidence 2333333333333 3689999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCCCcHHHHHHHHHHHHH
Q 006476 364 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 427 (643)
Q Consensus 364 ~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~~ 427 (643)
||+|||.|..|||+|.|+ ++..|+||+||+.|+|+.|.++.++++. ..+.+.+|++.
T Consensus 316 RGLDIP~V~LVvN~diPr-~P~~yiHRvGRtARAGR~G~aiSivt~r------Dv~l~~aiE~~ 372 (442)
T KOG0340|consen 316 RGLDIPTVELVVNHDIPR-DPKDYIHRVGRTARAGRKGMAISIVTQR------DVELLQAIEEE 372 (442)
T ss_pred cCCCCCceeEEEecCCCC-CHHHHHHhhcchhcccCCcceEEEechh------hHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999865 45677888764
No 26
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.3e-44 Score=397.86 Aligned_cols=310 Identities=19% Similarity=0.258 Sum_probs=247.4
Q ss_pred HHhcCCC-CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHH
Q 006476 82 FAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 160 (643)
Q Consensus 82 ~~~~~~~-~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~ 160 (643)
+.+.|.| .+||+|.+||+.+++ ++|+++++|||+|||++|++|++. .++.++|++||++|+.|+++.+.
T Consensus 3 l~~~~g~~~~r~~Q~~ai~~~l~-------g~dvlv~apTGsGKTl~y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~ 72 (470)
T TIGR00614 3 LKTVFGLSSFRPVQLEVINAVLL-------GRDCFVVMPTGGGKSLCYQLPALC---SDGITLVISPLISLMEDQVLQLK 72 (470)
T ss_pred hHhhcCCCCCCHHHHHHHHHHHc-------CCCEEEEcCCCCcHhHHHHHHHHH---cCCcEEEEecHHHHHHHHHHHHH
Confidence 3444555 899999999999975 579999999999999999999875 37789999999999999999987
Q ss_pred HHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc------c-ccCccceEEeecccccc---hh--
Q 006476 161 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------V-VYNNLGLLVVDEEQRFG---VK-- 228 (643)
Q Consensus 161 ~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~------~-~~~~l~llViDEah~~g---~~-- 228 (643)
.. ++.+..+.+..+..+....+..+..|.++|+++||+.+... + ...++++|||||||++. ..
T Consensus 73 ~~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr 147 (470)
T TIGR00614 73 AS-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFR 147 (470)
T ss_pred Hc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccH
Confidence 53 68889999988888778888888999999999999987542 2 45789999999999853 21
Q ss_pred ----HHHHHHhcCCCceEEEeccCCChHhHHHHHh--cCCCcceeeCCCCCccceeEEEccCCHHHHHHHHHHHHh---c
Q 006476 229 ----QKEKIASFKISVDVLTLSATPIPRTLYLALT--GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELD---R 299 (643)
Q Consensus 229 ----~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~--~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~i~~~l~---~ 299 (643)
....+....++.+++++|||+.+........ ++.++.++.. ...+..+...+..... .....+...+. .
T Consensus 148 ~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~-s~~r~nl~~~v~~~~~-~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 148 PDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT-SFDRPNLYYEVRRKTP-KILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC-CCCCCCcEEEEEeCCc-cHHHHHHHHHHHhcC
Confidence 1223444457899999999998876654433 3344433332 2223333322222221 12222333332 4
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecC
Q 006476 300 GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379 (643)
Q Consensus 300 ~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~ 379 (643)
+..++|||++++.++.+++.|+.. ++.+..+||+|++.+|+.++++|++|+++|||||+++++|||+|++++||++++
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~--g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~ 303 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNL--GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL 303 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhc--CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC
Confidence 456699999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 380 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 380 p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
|. ++..|+||+||+||.|..|.|++++++.+
T Consensus 304 P~-s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d 334 (470)
T TIGR00614 304 PK-SMESYYQESGRAGRDGLPSECHLFYAPAD 334 (470)
T ss_pred CC-CHHHHHhhhcCcCCCCCCceEEEEechhH
Confidence 98 99999999999999999999999998764
No 27
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-45 Score=368.77 Aligned_cols=331 Identities=21% Similarity=0.289 Sum_probs=271.0
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH---------HCCCeEEEEecc
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV---------SAGKQAMVLAPT 148 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~---------~~g~~vlil~Pt 148 (643)
+++.+.+.++-.|||+|.+|||.++. +.|++.++.||+|||++|++|.+-++ ..++.+|+++||
T Consensus 231 vmenIkK~GFqKPtPIqSQaWPI~LQ-------G~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~pt 303 (629)
T KOG0336|consen 231 VMENIKKTGFQKPTPIQSQAWPILLQ-------GIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPT 303 (629)
T ss_pred HHHHHHhccCCCCCcchhcccceeec-------CcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEecc
Confidence 57888899999999999999999986 68999999999999999999987553 236789999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeeccc
Q 006476 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQ 223 (643)
Q Consensus 149 ~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDEah 223 (643)
++||.|+--+.+++ .+.+.+...++|+.+.. ++.+.++.| ++|+|+||++|.+ .+.+..+.++|+||||
T Consensus 304 reLalqie~e~~ky--syng~ksvc~ygggnR~---eqie~lkrg-veiiiatPgrlndL~~~n~i~l~siTYlVlDEAD 377 (629)
T KOG0336|consen 304 RELALQIEGEVKKY--SYNGLKSVCVYGGGNRN---EQIEDLKRG-VEIIIATPGRLNDLQMDNVINLASITYLVLDEAD 377 (629)
T ss_pred HHHHHHHHhHHhHh--hhcCcceEEEecCCCch---hHHHHHhcC-ceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh
Confidence 99999998888763 23367777777755444 466777777 9999999999975 3567888999999999
Q ss_pred cc---ch--hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCcc---ceeEEEccCCHHH---HHHH
Q 006476 224 RF---GV--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL---PIKTHLSAFSKEK---VISA 292 (643)
Q Consensus 224 ~~---g~--~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~---~v~~~~~~~~~~~---~~~~ 292 (643)
+| |+ ..+..+...+++.|+++.|||+++.+..++..++.++..+....-+.. .+.+.+....+.. +...
T Consensus 378 rMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~ 457 (629)
T KOG0336|consen 378 RMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQF 457 (629)
T ss_pred hhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHH
Confidence 85 44 456778889999999999999999999999999998877765444332 3334332222222 3444
Q ss_pred HHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCC
Q 006476 293 IKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 372 (643)
Q Consensus 293 i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~ 372 (643)
+...+....++++||.++..++.+..-+.-. ++....+||+-.+.+|+..+++|++|+++|||||+++++|+|+|+++
T Consensus 458 f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~--gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiT 535 (629)
T KOG0336|consen 458 FVANMSSNDKVIIFVSRKVMADHLSSDFCLK--GISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDIT 535 (629)
T ss_pred HHHhcCCCceEEEEEechhhhhhccchhhhc--ccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcc
Confidence 4455567789999999988888777777655 88999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCCCcHHHHHHHHHHHH
Q 006476 373 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 426 (643)
Q Consensus 373 ~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~ 426 (643)
+|+|||+|+ ++++|+||+||+||+|+.|.++.|++.++- ..+.+-++.+++
T Consensus 536 HV~NyDFP~-nIeeYVHRvGrtGRaGr~G~sis~lt~~D~--~~a~eLI~ILe~ 586 (629)
T KOG0336|consen 536 HVYNYDFPR-NIEEYVHRVGRTGRAGRTGTSISFLTRNDW--SMAEELIQILER 586 (629)
T ss_pred eeeccCCCc-cHHHHHHHhcccccCCCCcceEEEEehhhH--HHHHHHHHHHHH
Confidence 999999998 999999999999999999999999987753 344444444443
No 28
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.7e-44 Score=375.25 Aligned_cols=325 Identities=22% Similarity=0.288 Sum_probs=268.3
Q ss_pred CCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC-------CCeEEE
Q 006476 73 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-------GKQAMV 144 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-------g~~vli 144 (643)
++.++ ..+++.+.++..+|++|..+|+.++. ++|+++.|-||+|||++|++|+++.+.. +-.++|
T Consensus 87 ~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~-------gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlI 159 (543)
T KOG0342|consen 87 GSLSPLTLKAIKEMGFETMTPVQQKTIPPLLE-------GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLI 159 (543)
T ss_pred cccCHHHHHHHHhcCccchhHHHHhhcCccCC-------CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEE
Confidence 44555 78999999999999999999999975 5799999999999999999999988643 457999
Q ss_pred EeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccc------ccCccceEE
Q 006476 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV------VYNNLGLLV 218 (643)
Q Consensus 145 l~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~------~~~~l~llV 218 (643)
++|||+||.|++.+.++.+...+++.++++.|+.+... .-+.+..| ++|+|+||++|.+.+ .++++.++|
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~---e~~kl~k~-~niliATPGRLlDHlqNt~~f~~r~~k~lv 235 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSV---EADKLVKG-CNILIATPGRLLDHLQNTSGFLFRNLKCLV 235 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchH---HHHHhhcc-ccEEEeCCchHHhHhhcCCcchhhccceeE
Confidence 99999999999999999877777899999999765443 23445555 999999999998743 457889999
Q ss_pred eeccccc---chh--HHHHHHhcCCCceEEEeccCCChHhHHHHHhcCC-CcceeeCCCCCccc----eeE-EEccCCH-
Q 006476 219 VDEEQRF---GVK--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFR-DASLISTPPPERLP----IKT-HLSAFSK- 286 (643)
Q Consensus 219 iDEah~~---g~~--~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~-~~~~i~~~~~~~~~----v~~-~~~~~~~- 286 (643)
+||||++ |+. ....++.++...|.+++|||.++.+...+...+. ++..+......... +.+ ++.....
T Consensus 236 lDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~ 315 (543)
T KOG0342|consen 236 LDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS 315 (543)
T ss_pred eecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc
Confidence 9999994 553 3456677789999999999999988877765553 46666554433221 222 2222222
Q ss_pred --HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccc
Q 006476 287 --EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 364 (643)
Q Consensus 287 --~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~ 364 (643)
..+...+.+...+ .+++|||++...+..+++.|... +++|.-+||++++..|..+...|++.+.-||||||+++|
T Consensus 316 ~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~--dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaAR 392 (543)
T KOG0342|consen 316 RFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYI--DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAAR 392 (543)
T ss_pred hHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhc--CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhc
Confidence 2344455554433 89999999999999999999977 899999999999999999999999999999999999999
Q ss_pred cccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCC
Q 006476 365 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 365 GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~ 412 (643)
|+|+|+|+.||.+|+|. ++.+|+||+||+||.|..|.++++..|++.
T Consensus 393 GlD~P~V~~VvQ~~~P~-d~~~YIHRvGRTaR~gk~G~alL~l~p~El 439 (543)
T KOG0342|consen 393 GLDIPDVDWVVQYDPPS-DPEQYIHRVGRTAREGKEGKALLLLAPWEL 439 (543)
T ss_pred cCCCCCceEEEEeCCCC-CHHHHHHHhccccccCCCceEEEEeChhHH
Confidence 99999999999999998 999999999999999999999999988753
No 29
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=5.3e-43 Score=404.26 Aligned_cols=317 Identities=16% Similarity=0.192 Sum_probs=243.4
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC--CCeEEEEeccHHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQH 155 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~--g~~vlil~Pt~~La~Q~ 155 (643)
+.+.+.+.++..|||+|.+||+.+++ ++|+++++|||||||++|++|++..+.+ +.++|||+||++||.|+
T Consensus 25 l~~~L~~~g~~~p~~~Q~~ai~~il~-------G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~ 97 (742)
T TIGR03817 25 VVAALEAAGIHRPWQHQARAAELAHA-------GRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQ 97 (742)
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHHC-------CCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHH
Confidence 78889988888999999999999975 6899999999999999999999988754 46999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc---------cccCccceEEeeccccc-
Q 006476 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR---------VVYNNLGLLVVDEEQRF- 225 (643)
Q Consensus 156 ~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~---------~~~~~l~llViDEah~~- 225 (643)
++++++ +. ..++++..+.|+.+..++. .+..+ ++|+|+||++|... ..++++++|||||+|++
T Consensus 98 ~~~l~~-l~-~~~i~v~~~~Gdt~~~~r~----~i~~~-~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~ 170 (742)
T TIGR03817 98 LRAVRE-LT-LRGVRPATYDGDTPTEERR----WAREH-ARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYR 170 (742)
T ss_pred HHHHHH-hc-cCCeEEEEEeCCCCHHHHH----HHhcC-CCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhcc
Confidence 999987 44 3478999998877654432 23334 89999999987532 12689999999999986
Q ss_pred ---chhHH---HHHH----hcCCCceEEEeccCCChHhHHHHHhcCCCc-ceeeCC--CCCccceeEEEcc---------
Q 006476 226 ---GVKQK---EKIA----SFKISVDVLTLSATPIPRTLYLALTGFRDA-SLISTP--PPERLPIKTHLSA--------- 283 (643)
Q Consensus 226 ---g~~~~---~~l~----~~~~~~~vl~lSATp~~~~~~~~~~~~~~~-~~i~~~--~~~~~~v~~~~~~--------- 283 (643)
|.... +.+. ....+.|++++|||....... +...+..+ .++... +.....+..+...
T Consensus 171 g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~-~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~ 249 (742)
T TIGR03817 171 GVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAA-ASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENG 249 (742)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHH-HHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccc
Confidence 22211 2222 234678999999998655432 22222222 222111 1111111111000
Q ss_pred -----CCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC------CCcEEEEeCCCCHHHHHHHHHHHhcCC
Q 006476 284 -----FSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP------GVDIAIAHGQQYSRQLEETMEKFAQGA 352 (643)
Q Consensus 284 -----~~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p------~~~v~~~hg~~~~~~r~~v~~~F~~g~ 352 (643)
.........+...+..+.+++|||++++.++.++..|+..+. +.++..+||++++++|.+++++|++|+
T Consensus 250 ~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~ 329 (742)
T TIGR03817 250 APVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGE 329 (742)
T ss_pred cccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCC
Confidence 001223444555556789999999999999999999876531 357889999999999999999999999
Q ss_pred ceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCC
Q 006476 353 IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 353 ~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~ 410 (643)
+++||||+++++|||+|++++||+++.|. +.++|+||+||+||.|+.|.++++.+.+
T Consensus 330 i~vLVaTd~lerGIDI~~vd~VI~~~~P~-s~~~y~qRiGRaGR~G~~g~ai~v~~~~ 386 (742)
T TIGR03817 330 LLGVATTNALELGVDISGLDAVVIAGFPG-TRASLWQQAGRAGRRGQGALVVLVARDD 386 (742)
T ss_pred ceEEEECchHhccCCcccccEEEEeCCCC-CHHHHHHhccccCCCCCCcEEEEEeCCC
Confidence 99999999999999999999999999998 9999999999999999999999998754
No 30
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=5.5e-43 Score=402.20 Aligned_cols=320 Identities=16% Similarity=0.162 Sum_probs=251.9
Q ss_pred CCCCCh-hHHHHHhcCCC-CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccH
Q 006476 72 PYPKNP-AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149 (643)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~-~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~ 149 (643)
.||... +...+...|+| .++|.|.++|+.++. ++|+++++|||+|||++|++|++.. ++.++||+|++
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~-------GrDVLVimPTGSGKSLcYQLPAL~~---~GiTLVISPLi 510 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMS-------GYDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLV 510 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHc-------CCCEEEEcCCCccHHHHHHHHHHHc---CCcEEEEeCHH
Confidence 466665 55566677765 999999999999975 6899999999999999999998754 67899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhc--CCceEEEechHhhhcc------c----ccCccceE
Q 006476 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH--GHLNIIVGTHSLLGSR------V----VYNNLGLL 217 (643)
Q Consensus 150 ~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~--g~~dIiI~T~~~L~~~------~----~~~~l~ll 217 (643)
+|+.++...+... ++.+..+.+..+..++...+..+.. |.++|+|+||++|... + ....+.+|
T Consensus 511 SLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslI 585 (1195)
T PLN03137 511 SLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARF 585 (1195)
T ss_pred HHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccccee
Confidence 9999776666542 7899999999888888888887776 8899999999987531 1 12457899
Q ss_pred Eeeccccc---chh------HHHHHHhcCCCceEEEeccCCChHhHHHHHhc--CCCcceeeCCCCCccceeEEEccCCH
Q 006476 218 VVDEEQRF---GVK------QKEKIASFKISVDVLTLSATPIPRTLYLALTG--FRDASLISTPPPERLPIKTHLSAFSK 286 (643)
Q Consensus 218 ViDEah~~---g~~------~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~--~~~~~~i~~~~~~~~~v~~~~~~~~~ 286 (643)
||||||++ |.. ....++...++++++++|||..+.+....... +.++.++.. ...+..+...+....
T Consensus 586 VIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~-Sf~RpNL~y~Vv~k~- 663 (1195)
T PLN03137 586 VIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ-SFNRPNLWYSVVPKT- 663 (1195)
T ss_pred ccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec-ccCccceEEEEeccc-
Confidence 99999985 421 12235555678999999999988776544433 333333222 222333322222222
Q ss_pred HHHHHHHHHHHh---cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccc
Q 006476 287 EKVISAIKYELD---RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 363 (643)
Q Consensus 287 ~~~~~~i~~~l~---~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~ 363 (643)
......+.+.+. .+...+|||++++.++.+++.|+.. ++.+..+||+|++.+|+.++++|.+|+++|||||++++
T Consensus 664 kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~--Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFG 741 (1195)
T PLN03137 664 KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEF--GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFG 741 (1195)
T ss_pred hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHC--CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhh
Confidence 122233333332 2467899999999999999999987 89999999999999999999999999999999999999
Q ss_pred ccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 364 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 364 ~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
+|||+|+|++||++++|. ++..|+||+|||||.|..|.|++||+..+
T Consensus 742 MGIDkPDVR~VIHydlPk-SiEsYyQriGRAGRDG~~g~cILlys~~D 788 (1195)
T PLN03137 742 MGINKPDVRFVIHHSLPK-SIEGYHQECGRAGRDGQRSSCVLYYSYSD 788 (1195)
T ss_pred cCCCccCCcEEEEcCCCC-CHHHHHhhhcccCCCCCCceEEEEecHHH
Confidence 999999999999999998 99999999999999999999999997643
No 31
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-43 Score=371.04 Aligned_cols=318 Identities=24% Similarity=0.338 Sum_probs=253.7
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC-------------CCeEEE
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-------------GKQAMV 144 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-------------g~~vli 144 (643)
+...+....+-.|||+|+.+|+.+.. ++|.++||+||||||.+|++|++..+.. .++++|
T Consensus 85 l~~ni~~~~~~~ptpvQk~sip~i~~-------Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lI 157 (482)
T KOG0335|consen 85 LAGNIKRSGYTKPTPVQKYSIPIISG-------GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALI 157 (482)
T ss_pred HhhccccccccCCCcceeeccceeec-------CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEE
Confidence 55666777888999999999999854 7899999999999999999999987643 268999
Q ss_pred EeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEe
Q 006476 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVV 219 (643)
Q Consensus 145 l~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llVi 219 (643)
++|||+||.|+|++..+ |....++++...+|+.+... +...+.+| +||+|+||++|.+ .+.+.+++++|+
T Consensus 158 lapTReL~~Qi~nea~k-~~~~s~~~~~~~ygg~~~~~---q~~~~~~g-cdIlvaTpGrL~d~~e~g~i~l~~~k~~vL 232 (482)
T KOG0335|consen 158 LAPTRELVDQIYNEARK-FSYLSGMKSVVVYGGTDLGA---QLRFIKRG-CDILVATPGRLKDLIERGKISLDNCKFLVL 232 (482)
T ss_pred EeCcHHHhhHHHHHHHh-hcccccceeeeeeCCcchhh---hhhhhccC-ccEEEecCchhhhhhhcceeehhhCcEEEe
Confidence 99999999999999986 55555789999999755443 45566666 9999999999976 456788899999
Q ss_pred eccccc----ch--hHHHHHHhc----CCCceEEEeccCCChHhHHHHHhcCCC-cceeeCC--CCCccceeEEEccCCH
Q 006476 220 DEEQRF----GV--KQKEKIASF----KISVDVLTLSATPIPRTLYLALTGFRD-ASLISTP--PPERLPIKTHLSAFSK 286 (643)
Q Consensus 220 DEah~~----g~--~~~~~l~~~----~~~~~vl~lSATp~~~~~~~~~~~~~~-~~~i~~~--~~~~~~v~~~~~~~~~ 286 (643)
||||+| |+ ..+..+... ..+.|.++||||.+.....++...+.+ ...+.+. ......+.+.+....+
T Consensus 233 DEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 233 DEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE 312 (482)
T ss_pred cchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc
Confidence 999985 33 333444333 247899999999877666655555554 2222221 1122233333333443
Q ss_pred HHHHHHHHHHHh------cCC-----eEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceE
Q 006476 287 EKVISAIKYELD------RGG-----QVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKI 355 (643)
Q Consensus 287 ~~~~~~i~~~l~------~~~-----qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~I 355 (643)
...+..+...+. ..+ .++|||.+++.+..++..|... ++++..+||.-++.+|++.++.|++|.+.+
T Consensus 313 ~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~--~~~~~sIhg~~tq~er~~al~~Fr~g~~pv 390 (482)
T KOG0335|consen 313 MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN--GYPAKSIHGDRTQIEREQALNDFRNGKAPV 390 (482)
T ss_pred hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC--CCCceeecchhhhhHHHHHHHHhhcCCcce
Confidence 344444444433 233 8999999999999999999987 899999999999999999999999999999
Q ss_pred EEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCC
Q 006476 356 LICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 356 LVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~ 410 (643)
||||++++||+|+|+|++||+||.|. +..+|+||+|||||.|..|.+..|++..
T Consensus 391 lVaT~VaaRGlDi~~V~hVInyDmP~-d~d~YvHRIGRTGR~Gn~G~atsf~n~~ 444 (482)
T KOG0335|consen 391 LVATNVAARGLDIPNVKHVINYDMPA-DIDDYVHRIGRTGRVGNGGRATSFFNEK 444 (482)
T ss_pred EEEehhhhcCCCCCCCceeEEeecCc-chhhHHHhccccccCCCCceeEEEeccc
Confidence 99999999999999999999999998 8999999999999999999999999844
No 32
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3e-42 Score=392.18 Aligned_cols=318 Identities=20% Similarity=0.246 Sum_probs=250.9
Q ss_pred CCCCh-hHHHHHhcCCC-CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHH
Q 006476 73 YPKNP-AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 150 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~-~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~ 150 (643)
++.++ ..+.+.+.|.| .++|+|.++|+.+++ ++|+++++|||+|||++|++|++.. ++.++|++|+++
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~-------g~dvlv~apTGsGKTl~y~lpal~~---~g~tlVisPl~s 76 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLS-------GRDCLVVMPTGGGKSLCYQIPALVL---DGLTLVVSPLIS 76 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHc-------CCCEEEEcCCCchHHHHHHHHHHHc---CCCEEEEecHHH
Confidence 33444 45566677777 799999999999975 5899999999999999999998754 668999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeeccccc
Q 006476 151 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRF 225 (643)
Q Consensus 151 La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDEah~~ 225 (643)
|+.|+.+.++.. ++.+..+.+..+..+....+..+..|+++++++||+++.. .+...++++|||||||++
T Consensus 77 L~~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 77 LMKDQVDQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCI 151 (607)
T ss_pred HHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccc
Confidence 999999998763 6888888888777777777888889999999999998763 233457899999999985
Q ss_pred c---h------hHHHHHHhcCCCceEEEeccCCChHhHHHHHh--cCCCcceeeCCCCCccceeEEEccC--CHHHHHHH
Q 006476 226 G---V------KQKEKIASFKISVDVLTLSATPIPRTLYLALT--GFRDASLISTPPPERLPIKTHLSAF--SKEKVISA 292 (643)
Q Consensus 226 g---~------~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~--~~~~~~~i~~~~~~~~~v~~~~~~~--~~~~~~~~ 292 (643)
. . .....+....++.+++++|||+++........ ++.++.+.. ....+..+...+... ....+...
T Consensus 152 ~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~~~r~nl~~~v~~~~~~~~~l~~~ 230 (607)
T PRK11057 152 SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDRPNIRYTLVEKFKPLDQLMRY 230 (607)
T ss_pred ccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CCCCCCcceeeeeeccchHHHHHHH
Confidence 3 1 22233444557899999999998776543332 333433222 222222222222111 11222332
Q ss_pred HHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCC
Q 006476 293 IKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 372 (643)
Q Consensus 293 i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~ 372 (643)
+.. ..+.+++|||++++.++.+++.|+.. ++++..+||+|++.+|++++++|.+|+++|||||+++++|||+|+++
T Consensus 231 l~~--~~~~~~IIFc~tr~~~e~la~~L~~~--g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~ 306 (607)
T PRK11057 231 VQE--QRGKSGIIYCNSRAKVEDTAARLQSR--GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVR 306 (607)
T ss_pred HHh--cCCCCEEEEECcHHHHHHHHHHHHhC--CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcC
Confidence 221 35678999999999999999999988 89999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 373 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 373 ~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
+||++|.|. +..+|+||+||+||.|..|.|++|+++.+
T Consensus 307 ~VI~~d~P~-s~~~y~Qr~GRaGR~G~~~~~ill~~~~d 344 (607)
T PRK11057 307 FVVHFDIPR-NIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (607)
T ss_pred EEEEeCCCC-CHHHHHHHhhhccCCCCCceEEEEeCHHH
Confidence 999999998 99999999999999999999999998765
No 33
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9e-44 Score=350.97 Aligned_cols=322 Identities=18% Similarity=0.168 Sum_probs=263.5
Q ss_pred hhHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC---CeEEEEeccHHHHH
Q 006476 77 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG---KQAMVLAPTIVLAK 153 (643)
Q Consensus 77 ~~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g---~~vlil~Pt~~La~ 153 (643)
.++..+.+.++..|+|+|.++||..+. ++|+|+-|..|+|||.+|..|+++.+... -|++|+||||+||.
T Consensus 95 ~LLmgIfe~G~ekPSPiQeesIPiaLt-------GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelAL 167 (459)
T KOG0326|consen 95 ELLMGIFEKGFEKPSPIQEESIPIALT-------GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELAL 167 (459)
T ss_pred HHHHHHHHhccCCCCCccccccceeec-------chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhH
Confidence 367778888888999999999998875 78999999999999999999999987553 48999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEeecccccch-
Q 006476 154 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGV- 227 (643)
Q Consensus 154 Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViDEah~~g~- 227 (643)
|..+.+++ +++..++++.+.+|+.+..+ .+-.+. +.++++||||+++.+. ..++++.++|+||||.+..
T Consensus 168 QtSqvc~~-lskh~~i~vmvttGGT~lrD---DI~Rl~-~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~ 242 (459)
T KOG0326|consen 168 QTSQVCKE-LSKHLGIKVMVTTGGTSLRD---DIMRLN-QTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSV 242 (459)
T ss_pred HHHHHHHH-HhcccCeEEEEecCCccccc---ceeeec-CceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhch
Confidence 99998886 67766899999999876533 233333 3499999999999763 3578899999999998632
Q ss_pred ----hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCC-ccceeEEEccCCHHHHHHHHHHHHh--cC
Q 006476 228 ----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE-RLPIKTHLSAFSKEKVISAIKYELD--RG 300 (643)
Q Consensus 228 ----~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~-~~~v~~~~~~~~~~~~~~~i~~~l~--~~ 300 (643)
.....+..++.+.|++++|||.+-.+..+....+.++..|....+- ...+.+++....+......+...+. .-
T Consensus 243 ~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqI 322 (459)
T KOG0326|consen 243 DFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQI 322 (459)
T ss_pred hhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcc
Confidence 2344566778999999999998777777777788887777653321 1233344433333333332222222 23
Q ss_pred CeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCC
Q 006476 301 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 380 (643)
Q Consensus 301 ~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p 380 (643)
.|.++|||+...+|-+|..+.++ |+.+.++|+.|.+++|.+++.+|++|.++.|||||.+.||||++++|+|||||+|
T Consensus 323 NQsIIFCNS~~rVELLAkKITel--GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfp 400 (459)
T KOG0326|consen 323 NQSIIFCNSTNRVELLAKKITEL--GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFP 400 (459)
T ss_pred cceEEEeccchHhHHHHHHHHhc--cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCC
Confidence 68999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhccCCCCCceEEEEEecCCCCC
Q 006476 381 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLL 413 (643)
Q Consensus 381 ~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~~ 413 (643)
+ +.+.|.||+||.||.|..|.|+.+++-++..
T Consensus 401 k-~aEtYLHRIGRsGRFGhlGlAInLityedrf 432 (459)
T KOG0326|consen 401 K-NAETYLHRIGRSGRFGHLGLAINLITYEDRF 432 (459)
T ss_pred C-CHHHHHHHccCCccCCCcceEEEEEehhhhh
Confidence 9 8999999999999999999999999876543
No 34
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=7.9e-44 Score=358.74 Aligned_cols=321 Identities=21% Similarity=0.307 Sum_probs=266.0
Q ss_pred hhHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH-----------HCCCeEEEE
Q 006476 77 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-----------SAGKQAMVL 145 (643)
Q Consensus 77 ~~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~-----------~~g~~vlil 145 (643)
++++.+.+.+...|||+|.+.+|.++. ++|.|..|-||||||++|.+|+.... ..|+..||+
T Consensus 180 ~~L~~lk~KGI~~PTpIQvQGlPvvLs-------GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLii 252 (610)
T KOG0341|consen 180 PLLRGLKKKGIVHPTPIQVQGLPVVLS-------GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLII 252 (610)
T ss_pred HHHHHHHhcCCCCCCceeecCcceEee-------cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEE
Confidence 367888889999999999999999976 68999999999999999988875432 248899999
Q ss_pred eccHHHHHHHHHHHHHHhc-----CCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccc
Q 006476 146 APTIVLAKQHFDVVSERFS-----KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLG 215 (643)
Q Consensus 146 ~Pt~~La~Q~~~~~~~~~~-----~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~ 215 (643)
||+|+||.|.++-+..++. .+|.++..++.|+.+..+ +++.++.| ++|+|+||++|.+. +.+.-+.
T Consensus 253 cPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~e---ql~~v~~G-vHivVATPGRL~DmL~KK~~sLd~CR 328 (610)
T KOG0341|consen 253 CPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVRE---QLDVVRRG-VHIVVATPGRLMDMLAKKIMSLDACR 328 (610)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHH---HHHHHhcC-eeEEEcCcchHHHHHHHhhccHHHHH
Confidence 9999999999988776543 357789999999887766 56677788 99999999999864 4566778
Q ss_pred eEEeeccccc---chh--HHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCc--cceeEEEccCCHHH
Q 006476 216 LLVVDEEQRF---GVK--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAFSKEK 288 (643)
Q Consensus 216 llViDEah~~---g~~--~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~--~~v~~~~~~~~~~~ 288 (643)
++.+|||||+ |+. .+..+..++..+|+++||||++.....++.+.+-.+..+.+....- ..+.+.+.....+.
T Consensus 329 yL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEa 408 (610)
T KOG0341|consen 329 YLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEA 408 (610)
T ss_pred HhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhh
Confidence 9999999995 653 4566777788999999999998888888888877777666533222 12222222222233
Q ss_pred HHHHHHHHHhcC-CeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccccccc
Q 006476 289 VISAIKYELDRG-GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 367 (643)
Q Consensus 289 ~~~~i~~~l~~~-~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiD 367 (643)
..-.+..++.+. .++++||..+.+++.+.++|--. |+.++.+||+-.+++|...++.|+.|+-+|||||++++.|+|
T Consensus 409 KiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlK--GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLD 486 (610)
T KOG0341|consen 409 KIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLK--GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLD 486 (610)
T ss_pred hhhhHHHHhccCCCceEEEeccccChHHHHHHHHHc--cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCC
Confidence 344455556544 78999999999999999999776 999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 368 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 368 ip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
+|++.+|||||+|. .+.+|+||+||+||+|+.|.|-+|++...
T Consensus 487 Fp~iqHVINyDMP~-eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 487 FPDIQHVINYDMPE-EIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred CccchhhccCCChH-HHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 99999999999998 99999999999999999999999998764
No 35
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-42 Score=358.90 Aligned_cols=327 Identities=22% Similarity=0.325 Sum_probs=253.9
Q ss_pred CCCCh-hHHHHHhcCC-CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---------CCCe
Q 006476 73 YPKNP-AIAEFAAQFP-YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---------AGKQ 141 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~-~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---------~g~~ 141 (643)
+..++ +.+.++.... -.||.+|.+|||.++. ++|++|.++||||||++|++|+.+.+. .|..
T Consensus 141 LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~-------grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 141 LGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLE-------GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred cCCCHHHHHHHHHHhccCccchHhhcchhhhhc-------CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 45566 6777776554 4999999999999986 699999999999999999999998764 3789
Q ss_pred EEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc------cccCccc
Q 006476 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNLG 215 (643)
Q Consensus 142 vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~------~~~~~l~ 215 (643)
+||+||||+||.|+|+.+++.+..+..+--+++.|+...++. ...++.| ++|+||||++|.+. +.++++.
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSE---KARLRKG-iNILIgTPGRLvDHLknT~~i~~s~LR 289 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSE---KARLRKG-INILIGTPGRLVDHLKNTKSIKFSRLR 289 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccH---HHHHhcC-ceEEEcCchHHHHHHhccchheeeeee
Confidence 999999999999999999998888766777788887665543 3456678 99999999999874 4578899
Q ss_pred eEEeeccccc---chh--HHHHHHhc-------------CCCceEEEeccCCChHhHHHHHhcCCCcceeeCCC------
Q 006476 216 LLVVDEEQRF---GVK--QKEKIASF-------------KISVDVLTLSATPIPRTLYLALTGFRDASLISTPP------ 271 (643)
Q Consensus 216 llViDEah~~---g~~--~~~~l~~~-------------~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~------ 271 (643)
+||+||+|++ |+. ....++.+ +...|-+++|||....+..++-..+.|+..|....
T Consensus 290 wlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~ 369 (708)
T KOG0348|consen 290 WLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLN 369 (708)
T ss_pred EEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcC
Confidence 9999999984 552 22233222 23467889999998888888888888887776210
Q ss_pred -CC-------------cc-----c--e-eEEEccCCHHH---HHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhC
Q 006476 272 -PE-------------RL-----P--I-KTHLSAFSKEK---VISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAF 324 (643)
Q Consensus 272 -~~-------------~~-----~--v-~~~~~~~~~~~---~~~~i~~~l~--~~~qvlvf~~~~~~~e~l~~~L~~~~ 324 (643)
.. .+ | . +.++...+.-. +...+..... ...+++||+++.+.++.-++.+....
T Consensus 370 p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l 449 (708)
T KOG0348|consen 370 PKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEAL 449 (708)
T ss_pred cchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhh
Confidence 00 00 0 0 01111111111 2222333222 33578999999999998888775432
Q ss_pred --------------------CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCH
Q 006476 325 --------------------PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 384 (643)
Q Consensus 325 --------------------p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~ 384 (643)
-+.++..+||+|++++|..+++.|...+..||+|||+++||+|+|+|.+||.||+|. +.
T Consensus 450 ~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~-s~ 528 (708)
T KOG0348|consen 450 LSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPF-ST 528 (708)
T ss_pred hcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCC-CH
Confidence 134789999999999999999999999889999999999999999999999999995 99
Q ss_pred HHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 385 AQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 385 ~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
++|+||+||+.|.|..|.+.+|..|.+
T Consensus 529 adylHRvGRTARaG~kG~alLfL~P~E 555 (708)
T KOG0348|consen 529 ADYLHRVGRTARAGEKGEALLFLLPSE 555 (708)
T ss_pred HHHHHHhhhhhhccCCCceEEEecccH
Confidence 999999999999999999999998874
No 36
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.5e-41 Score=385.23 Aligned_cols=311 Identities=22% Similarity=0.248 Sum_probs=249.2
Q ss_pred HHHHhcCCC-CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHH
Q 006476 80 AEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158 (643)
Q Consensus 80 ~~~~~~~~~-~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~ 158 (643)
+.+.+.|+| +++|.|.+||+.+++ ++|+++++|||+|||++|++|++. .++.++|++|+++|+.|+++.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~-------g~dvlv~~PTG~GKTl~y~lpal~---~~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLD-------GRDVLVVMPTGGGKSLCYQVPALL---LKGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHc-------CCCEEEEcCCCccHhHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHH
Confidence 456666777 689999999999975 579999999999999999998874 367899999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeecccccc---hh--
Q 006476 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFG---VK-- 228 (643)
Q Consensus 159 ~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDEah~~g---~~-- 228 (643)
++.. ++.+..+++..+..+....+..+..|.++|+++||+++.. .+...++++|||||||++. ..
T Consensus 73 l~~~-----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~fr 147 (591)
T TIGR01389 73 LRAA-----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFR 147 (591)
T ss_pred HHHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccH
Confidence 8863 6889999999888888888889999999999999998853 3445789999999999853 21
Q ss_pred ----HHHHHHhcCCCceEEEeccCCChHhHHHHHhcC--CCcceeeCCCCCccceeEEEccC-C-HHHHHHHHHHHHhcC
Q 006476 229 ----QKEKIASFKISVDVLTLSATPIPRTLYLALTGF--RDASLISTPPPERLPIKTHLSAF-S-KEKVISAIKYELDRG 300 (643)
Q Consensus 229 ----~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~--~~~~~i~~~~~~~~~v~~~~~~~-~-~~~~~~~i~~~l~~~ 300 (643)
....+....++.+++++|||+++.+.......+ .++..+.. ...+..+...+... . ...+.+.+.. ..+
T Consensus 148 p~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~~~~l~~~l~~--~~~ 224 (591)
T TIGR01389 148 PEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFIT-SFDRPNLRFSVVKKNNKQKFLLDYLKK--HRG 224 (591)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec-CCCCCCcEEEEEeCCCHHHHHHHHHHh--cCC
Confidence 122233334566799999999888775444332 33333322 22232232222221 1 2223333332 135
Q ss_pred CeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCC
Q 006476 301 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 380 (643)
Q Consensus 301 ~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p 380 (643)
.+.+|||++++.++.+++.|... ++++..+||+|+.++|+.+++.|.+|+++|||||+++++|||+|++++||++++|
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~--g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p 302 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQ--GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMP 302 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhC--CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCC
Confidence 78999999999999999999887 8899999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 381 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 381 ~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
. ++.+|+|++||+||.|..|.|+++|++.+
T Consensus 303 ~-s~~~y~Q~~GRaGR~G~~~~~il~~~~~d 332 (591)
T TIGR01389 303 G-NLESYYQEAGRAGRDGLPAEAILLYSPAD 332 (591)
T ss_pred C-CHHHHhhhhccccCCCCCceEEEecCHHH
Confidence 8 99999999999999999999999998764
No 37
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4.3e-42 Score=400.08 Aligned_cols=407 Identities=21% Similarity=0.247 Sum_probs=276.0
Q ss_pred hhHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHH
Q 006476 77 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156 (643)
Q Consensus 77 ~~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~ 156 (643)
.+.+.+.+.+..+|+|+|.+|++..+. .++|+++++|||||||++|.+|+++.+.++++++|++||++||.|++
T Consensus 11 ~~~~~l~~~g~~~l~p~Q~~ai~~~~~------~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~ 84 (737)
T PRK02362 11 GVIEFYEAEGIEELYPPQAEAVEAGLL------DGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKF 84 (737)
T ss_pred HHHHHHHhCCCCcCCHHHHHHHHHHHh------CCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHH
Confidence 378888888888999999999987432 15799999999999999999999999888999999999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEeecccccchhH--
Q 006476 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGVKQ-- 229 (643)
Q Consensus 157 ~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViDEah~~g~~~-- 229 (643)
+.|+. +..+ ++++..++|+.+... .. .+..+|+|+||+.+... ..++++++||+||+|.++...
T Consensus 85 ~~~~~-~~~~-g~~v~~~tGd~~~~~--~~-----l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg 155 (737)
T PRK02362 85 EEFER-FEEL-GVRVGISTGDYDSRD--EW-----LGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRG 155 (737)
T ss_pred HHHHH-hhcC-CCEEEEEeCCcCccc--cc-----cCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcch
Confidence 99985 6665 799999999654332 11 14589999999977431 235789999999999875321
Q ss_pred ------HHHHHhcCCCceEEEeccCCCh-HhHHHHHhcCCCcceeeCCCCCccceeEE---------------EccCCHH
Q 006476 230 ------KEKIASFKISVDVLTLSATPIP-RTLYLALTGFRDASLISTPPPERLPIKTH---------------LSAFSKE 287 (643)
Q Consensus 230 ------~~~l~~~~~~~~vl~lSATp~~-~~~~~~~~~~~~~~~i~~~~~~~~~v~~~---------------~~~~~~~ 287 (643)
...++...++.|++++|||++. +.+...+ +...+... ....++... +......
T Consensus 156 ~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl----~~~~~~~~-~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~ 230 (737)
T PRK02362 156 PTLEVTLAKLRRLNPDLQVVALSATIGNADELADWL----DAELVDSE-WRPIDLREGVFYGGAIHFDDSQREVEVPSKD 230 (737)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHh----CCCcccCC-CCCCCCeeeEecCCeeccccccccCCCccch
Confidence 2334445678999999999853 2222211 11111100 000011100 0001113
Q ss_pred HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC----------------------------------CCcEEEEe
Q 006476 288 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP----------------------------------GVDIAIAH 333 (643)
Q Consensus 288 ~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p----------------------------------~~~v~~~h 333 (643)
.....+...+..+++++|||++++.++.++..|..... ..+|+++|
T Consensus 231 ~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hH 310 (737)
T PRK02362 231 DTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHH 310 (737)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeec
Confidence 34555666677889999999999999999888865421 13799999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEE----ecC----CCCCHHHHHHHHhccCCCCCc--eEE
Q 006476 334 GQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV----QDV----QQFGLAQLYQLRGRVGRADKE--AHA 403 (643)
Q Consensus 334 g~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~----~d~----p~~s~~~~~Qr~GR~GR~g~~--g~a 403 (643)
|+|++.+|+.+++.|++|.++|||||+++++|+|+|..++||. ||. ..++..+|.||+|||||.|.. |.|
T Consensus 311 agl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ 390 (737)
T PRK02362 311 AGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEA 390 (737)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceE
Confidence 9999999999999999999999999999999999998888876 542 235889999999999999754 999
Q ss_pred EEEecCCCCCcHHHHHHHH--------------HHHHH--hhcccchhhhhhhcccccCCCccCccccCCccchhhhhHH
Q 006476 404 YLFYPDKSLLSDQALERLA--------------ALEEC--RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFF 467 (643)
Q Consensus 404 ~~l~~~~~~~~~~~~~rl~--------------~i~~~--~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~~~~~~~~~ 467 (643)
++++.+.+...+...+.+. .+..+ .++..|......|+ +.-..+.|...|.+. -+...
T Consensus 391 ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~-~~~l~~Tf~~~~~~~-----~~~l~ 464 (737)
T PRK02362 391 VLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGL-LEFLEATFYATQTDD-----TGRLE 464 (737)
T ss_pred EEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHH-HHHHHhChHHhhccc-----hHHHH
Confidence 9998764311111011000 01110 11122222222221 011112222222211 12334
Q ss_pred HHHHHHHhhhc--------CccccccCCcceeEeeccCCCCCccccCCCC
Q 006476 468 EMLFESLSKVD--------EHCVISVPYKSVQIDININPRLPSEYINHLE 509 (643)
Q Consensus 468 ~~l~~a~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 509 (643)
++++.++..+. ++...+|++|..++..|++|.....++.+.+
T Consensus 465 ~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~ 514 (737)
T PRK02362 465 RVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLE 514 (737)
T ss_pred HHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhh
Confidence 55566665554 2234468899999999999998887765543
No 38
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-41 Score=350.58 Aligned_cols=332 Identities=24% Similarity=0.278 Sum_probs=273.5
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH--------CCCeEEEEeccH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--------AGKQAMVLAPTI 149 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~--------~g~~vlil~Pt~ 149 (643)
+...+.+.-+.+|||+|.+++|..+. ++|++-.|-||||||.+|+.|++-+++ +|+..+|+|||+
T Consensus 234 Lm~airk~Ey~kptpiq~qalptals-------grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTr 306 (731)
T KOG0339|consen 234 LMTAIRKSEYEKPTPIQCQALPTALS-------GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTR 306 (731)
T ss_pred HHHHHhhhhcccCCcccccccccccc-------cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccH
Confidence 66777788888999999999998764 689999999999999999999987764 368899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccc-----ccCccceEEeecccc
Q 006476 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQR 224 (643)
Q Consensus 150 ~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~-----~~~~l~llViDEah~ 224 (643)
+||.|++.++++ |++--++++..++|+.+..+ +.+.|+.| +.||||||++|.+.+ .+.++.+||+||+++
T Consensus 307 ela~Qi~~eaKk-f~K~ygl~~v~~ygGgsk~e---Q~k~Lk~g-~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadr 381 (731)
T KOG0339|consen 307 ELASQIFSEAKK-FGKAYGLRVVAVYGGGSKWE---QSKELKEG-AEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADR 381 (731)
T ss_pred HHHHHHHHHHHH-hhhhccceEEEeecCCcHHH---HHHhhhcC-CeEEEechHHHHHHHHhhcccceeeeEEEEechhh
Confidence 999999999986 75544899999999877766 56667766 999999999998654 567889999999999
Q ss_pred c---ch--hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCC--ccceeEEEc-cCCHHHHHHHHHHH
Q 006476 225 F---GV--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLS-AFSKEKVISAIKYE 296 (643)
Q Consensus 225 ~---g~--~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~--~~~v~~~~~-~~~~~~~~~~i~~~ 296 (643)
| |+ ..+.+...++++.|+|+||||........+...+.++..+...... .-.+.+.+. -.+....+.++.+.
T Consensus 382 mfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~ 461 (731)
T KOG0339|consen 382 MFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRH 461 (731)
T ss_pred hhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHH
Confidence 5 55 3355556779999999999999888888888777776544332111 112222222 23345556666665
Q ss_pred Hh---cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCE
Q 006476 297 LD---RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 373 (643)
Q Consensus 297 l~---~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~ 373 (643)
+. ..|++|+|+......+.++..|+.. ++.|..+||+|.+.+|.+++.+|+.+...|||+|+++++|+|||.+.+
T Consensus 462 L~~f~S~gkvlifVTKk~~~e~i~a~Lklk--~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikT 539 (731)
T KOG0339|consen 462 LVEFSSEGKVLIFVTKKADAEEIAANLKLK--GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKT 539 (731)
T ss_pred hhhhccCCcEEEEEeccCCHHHHHHHhccc--cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccce
Confidence 53 4589999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCCCcHHHHHHHHHHHH
Q 006476 374 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 426 (643)
Q Consensus 374 VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~ 426 (643)
||+||.-+ ++..+.||+||+||.|..|.+|+++++.+.. .+-.-...++.
T Consensus 540 VvnyD~ar-dIdththrigrtgRag~kGvayTlvTeKDa~--fAG~LVnnLe~ 589 (731)
T KOG0339|consen 540 VVNYDFAR-DIDTHTHRIGRTGRAGEKGVAYTLVTEKDAE--FAGHLVNNLEG 589 (731)
T ss_pred eecccccc-hhHHHHHHhhhcccccccceeeEEechhhHH--HhhHHHHHHhh
Confidence 99999998 9999999999999999999999999988643 44444445544
No 39
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=8.4e-40 Score=384.69 Aligned_cols=315 Identities=21% Similarity=0.251 Sum_probs=233.0
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---------CCCeEEEEecc
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---------AGKQAMVLAPT 148 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---------~g~~vlil~Pt 148 (643)
+.+.|.+ .+..|||+|.+|++.+++ ++|+++++|||||||++|++|++..+. ++.+++|++||
T Consensus 22 v~~~~~~-~~~~~tpiQ~~Ai~~il~-------g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPt 93 (876)
T PRK13767 22 VREWFKE-KFGTFTPPQRYAIPLIHE-------GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPL 93 (876)
T ss_pred HHHHHHH-ccCCCCHHHHHHHHHHHc-------CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCH
Confidence 4444555 455899999999999864 579999999999999999999987653 24579999999
Q ss_pred HHHHHHHHHHHHHHh----------c-CCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccc-------c
Q 006476 149 IVLAKQHFDVVSERF----------S-KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-------V 210 (643)
Q Consensus 149 ~~La~Q~~~~~~~~~----------~-~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~-------~ 210 (643)
++|+.|+++++.+.+ + ..+++++...+|+.+..++...+ . ..++|+|+||+.|...+ .
T Consensus 94 raLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l---~-~~p~IlVtTPE~L~~ll~~~~~~~~ 169 (876)
T PRK13767 94 RALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML---K-KPPHILITTPESLAILLNSPKFREK 169 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH---h-CCCCEEEecHHHHHHHhcChhHHHH
Confidence 999999998765321 1 23478999999988776654433 2 35899999999874311 3
Q ss_pred cCccceEEeecccccchh--------HHHHHHhcC-CCceEEEeccCCChH-hHHHHHhcC------CCcceeeCCCCCc
Q 006476 211 YNNLGLLVVDEEQRFGVK--------QKEKIASFK-ISVDVLTLSATPIPR-TLYLALTGF------RDASLISTPPPER 274 (643)
Q Consensus 211 ~~~l~llViDEah~~g~~--------~~~~l~~~~-~~~~vl~lSATp~~~-~~~~~~~~~------~~~~~i~~~~~~~ 274 (643)
++++++|||||+|.+... ..+.+..+. .+.|++++|||+.+. .....+.+. ++..++.......
T Consensus 170 l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~ 249 (876)
T PRK13767 170 LRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKP 249 (876)
T ss_pred HhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCcc
Confidence 578999999999997421 123444443 678999999998653 222333332 1112222211111
Q ss_pred cceeEEEc------cC---CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC----CCcEEEEeCCCCHHHH
Q 006476 275 LPIKTHLS------AF---SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP----GVDIAIAHGQQYSRQL 341 (643)
Q Consensus 275 ~~v~~~~~------~~---~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p----~~~v~~~hg~~~~~~r 341 (643)
..+..... .. ....+...+...+..+++++||||++..++.++..|+..++ +..+.++||+|++++|
T Consensus 250 ~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R 329 (876)
T PRK13767 250 FDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVR 329 (876)
T ss_pred ceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHH
Confidence 11111100 00 11234555666667789999999999999999999988654 3689999999999999
Q ss_pred HHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCC-CC--ceEEEE
Q 006476 342 EETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA-DK--EAHAYL 405 (643)
Q Consensus 342 ~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~-g~--~g~a~~ 405 (643)
..+++.|++|+++|||||+++++|||+|++++||+++.|. +.++|+||+||+||. |. .|.++.
T Consensus 330 ~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~-sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 330 LEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPK-SVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred HHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCC-CHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 9999999999999999999999999999999999999997 999999999999987 33 355554
No 40
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.9e-41 Score=390.73 Aligned_cols=387 Identities=17% Similarity=0.209 Sum_probs=278.6
Q ss_pred HHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 006476 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR 176 (643)
Q Consensus 97 ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g 176 (643)
..+.+++.+.+ +.+++++|+||||||+++.++++.....+.+++|++|||++|.|+++++.+.++...|..|++..+
T Consensus 9 ~~~~i~~~l~~---~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr 85 (812)
T PRK11664 9 VLPELLTALKT---APQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMR 85 (812)
T ss_pred HHHHHHHHHHh---CCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEec
Confidence 34555555522 578999999999999999999887654456999999999999999999987777766788998888
Q ss_pred CCChHHHHHHHHHHhcCCceEEEechHhhhc----ccccCccceEEeecccccchh-------HHHHHHhcCCCceEEEe
Q 006476 177 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRFGVK-------QKEKIASFKISVDVLTL 245 (643)
Q Consensus 177 ~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~----~~~~~~l~llViDEah~~g~~-------~~~~l~~~~~~~~vl~l 245 (643)
+.+... .+.+|+|+|++.|.+ +..++++++|||||+|+.+.. ..+.++.++++.++++|
T Consensus 86 ~~~~~~----------~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilm 155 (812)
T PRK11664 86 AESKVG----------PNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIM 155 (812)
T ss_pred CccccC----------CCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEE
Confidence 654322 236899999998864 456799999999999984322 12334556788999999
Q ss_pred ccCCChHhHHHHHhcCCCcceeeCCCCCccceeEEEccCCHHH-----HHHHHHHHHh-cCCeEEEEecCccChHHHHHH
Q 006476 246 SATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEK-----VISAIKYELD-RGGQVFYVLPRIKGLEEPMDF 319 (643)
Q Consensus 246 SATp~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~-----~~~~i~~~l~-~~~qvlvf~~~~~~~e~l~~~ 319 (643)
|||+....+ ...+.+..++..+ ...+|+..++....... +...+...+. .+++++||+|+..+++.+++.
T Consensus 156 SATl~~~~l---~~~~~~~~~I~~~-gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~ 231 (812)
T PRK11664 156 SATLDNDRL---QQLLPDAPVIVSE-GRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQ 231 (812)
T ss_pred ecCCCHHHH---HHhcCCCCEEEec-CccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHH
Confidence 999976543 2344455555543 33457776654433221 2223444443 368999999999999999999
Q ss_pred HHhhC-CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCC-----------------
Q 006476 320 LQQAF-PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ----------------- 381 (643)
Q Consensus 320 L~~~~-p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~----------------- 381 (643)
|+... .++.+..+||+|+..+|++++..|++|+.+|||||+++++|||||+|++||+++.++
T Consensus 232 L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~ 311 (812)
T PRK11664 232 LASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQR 311 (812)
T ss_pred HHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEe
Confidence 99743 478899999999999999999999999999999999999999999999999977653
Q ss_pred CCHHHHHHHHhccCCCCCceEEEEEecCCCCCcHHHHHHHHHHHHHhhcccchhhhhhhcccccCCCccCccccCCccch
Q 006476 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNV 461 (643)
Q Consensus 382 ~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~~~ 461 (643)
.|.+++.||+||+||. ..|.||.+|++++... .......+|.+... +.+.+....+ |..+.........+...
T Consensus 312 iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~-l~~~~~PEI~r~dL--~~~~L~l~~~---g~~~~~~~~~ld~P~~~ 384 (812)
T PRK11664 312 ISQASMTQRAGRAGRL-EPGICLHLYSKEQAER-AAAQSEPEILHSDL--SGLLLELLQW---GCHDPAQLSWLDQPPAA 384 (812)
T ss_pred echhhhhhhccccCCC-CCcEEEEecCHHHHhh-CccCCCCceeccch--HHHHHHHHHc---CCCCHHhCCCCCCCCHH
Confidence 1346899999999999 6999999998764311 11111222222211 2333333333 33344334444555444
Q ss_pred hhhhHHHHHHHHHhhhcCccccccCCcceeEeeccCCCCCccccCCCC
Q 006476 462 GVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509 (643)
Q Consensus 462 ~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 509 (643)
.+..-.+.|. .+.+++++.. .|+.|..++.+|++|.+++.++.+.+
T Consensus 385 ~~~~A~~~L~-~lgald~~g~-lT~~G~~m~~lp~~Prla~~ll~a~~ 430 (812)
T PRK11664 385 ALAAAKRLLQ-QLGALDGQGR-LTARGRKMAALGNDPRLAAMLVAAKE 430 (812)
T ss_pred HHHHHHHHHH-HCCCCCCCCC-cCHHHHHHHhcCCchHHHHHHHHHHh
Confidence 5555555554 4566665443 46899999999999999999987644
No 41
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.2e-40 Score=382.92 Aligned_cols=406 Identities=21% Similarity=0.290 Sum_probs=271.8
Q ss_pred CCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHH
Q 006476 73 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 151 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~L 151 (643)
++.++ +.+.+.+. +++++|+|.+|++.+.+ ++|+++++|||||||+++.+++++.+..++++++++|+++|
T Consensus 6 ~~l~~~~~~~~~~~-~~~l~~~Q~~ai~~l~~-------~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raL 77 (674)
T PRK01172 6 LGYDDEFLNLFTGN-DFELYDHQRMAIEQLRK-------GENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSL 77 (674)
T ss_pred cCCCHHHHHHHhhC-CCCCCHHHHHHHHHHhc-------CCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHH
Confidence 33444 66666554 56799999999998753 57899999999999999999999988888999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeecccccc
Q 006476 152 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFG 226 (643)
Q Consensus 152 a~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDEah~~g 226 (643)
|.|++++|.+ +... |.++...+|+.+.... .+ ..++|+|+||+.+.. ...++++++||+||+|+++
T Consensus 78 a~q~~~~~~~-l~~~-g~~v~~~~G~~~~~~~--~~-----~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 78 AMEKYEELSR-LRSL-GMRVKISIGDYDDPPD--FI-----KRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred HHHHHHHHHH-Hhhc-CCeEEEEeCCCCCChh--hh-----ccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 9999999986 5444 7899888886543221 11 347999999986532 2236889999999999975
Q ss_pred hh----HH----HHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCccceeEEEc--------cC--CHHH
Q 006476 227 VK----QK----EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLS--------AF--SKEK 288 (643)
Q Consensus 227 ~~----~~----~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~--------~~--~~~~ 288 (643)
.. .. ..++...++.+++++|||+.... ... .|.+...+.. .....|+...+. .. ....
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~~-~la--~wl~~~~~~~-~~r~vpl~~~i~~~~~~~~~~~~~~~~~ 224 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSNAN-ELA--QWLNASLIKS-NFRPVPLKLGILYRKRLILDGYERSQVD 224 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCHH-HHH--HHhCCCccCC-CCCCCCeEEEEEecCeeeeccccccccc
Confidence 32 11 22334467899999999985322 111 1222222221 111122221111 00 1112
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCC-----------------------CcEEEEeCCCCHHHHHHHH
Q 006476 289 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG-----------------------VDIAIAHGQQYSRQLEETM 345 (643)
Q Consensus 289 ~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~-----------------------~~v~~~hg~~~~~~r~~v~ 345 (643)
+...+......+++++|||++++.++.++..|...++. .+|+++||+|++++|+.++
T Consensus 225 ~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve 304 (674)
T PRK01172 225 INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304 (674)
T ss_pred HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHH
Confidence 34455555677899999999999999999998765321 2589999999999999999
Q ss_pred HHHhcCCceEEEecccccccccccCCCEEEEecCCC--------CCHHHHHHHHhccCCCC--CceEEEEEecCCCCCcH
Q 006476 346 EKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ--------FGLAQLYQLRGRVGRAD--KEAHAYLFYPDKSLLSD 415 (643)
Q Consensus 346 ~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~--------~s~~~~~Qr~GR~GR~g--~~g~a~~l~~~~~~~~~ 415 (643)
+.|++|.++|||||+++++|+|+|+ ..||+.+.+. ++..+|.||+|||||.| ..|.++++....+. .
T Consensus 305 ~~f~~g~i~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~--~ 381 (674)
T PRK01172 305 EMFRNRYIKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPAS--Y 381 (674)
T ss_pred HHHHcCCCeEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCccc--H
Confidence 9999999999999999999999996 5666665432 46789999999999997 46778887654321 1
Q ss_pred HHHHHHH---------------HHHH--HhhcccchhhhhhhcccccCCCccCccccCCccchhhhhHHHHHHHHHhhhc
Q 006476 416 QALERLA---------------ALEE--CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD 478 (643)
Q Consensus 416 ~~~~rl~---------------~i~~--~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~~~~~~~~~~~l~~a~~~~~ 478 (643)
...+++- .... ...+..|+.....|+. .-..+.|...+.+ .+...+.++.+++.+.
T Consensus 382 ~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~-~~l~~tf~~~~~~------~~~l~~~v~~~l~~L~ 454 (674)
T PRK01172 382 DAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLI-LFYNETLMAIQNG------VDEIDYYIESSLKFLK 454 (674)
T ss_pred HHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHH-HHHHhhhhHhcCc------hHHHHHHHHHHHHHHH
Confidence 1111110 0000 0223334433333321 1111122222221 2333455666666554
Q ss_pred C-------ccccccCCcceeEeeccCCCCCccccCCCC
Q 006476 479 E-------HCVISVPYKSVQIDININPRLPSEYINHLE 509 (643)
Q Consensus 479 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 509 (643)
. +...+|++|..++.+|++|.....++.+.+
T Consensus 455 ~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~ 492 (674)
T PRK01172 455 ENGFIKGDVTLRATRLGKLTSDLYIDPESALILKSAFD 492 (674)
T ss_pred HCCCcccCCcEeECHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 2 223467899999999999998877665443
No 42
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.8e-40 Score=380.53 Aligned_cols=376 Identities=18% Similarity=0.243 Sum_probs=272.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l 190 (643)
+.+++++|+||||||+++..+++.....+.+++|++|||++|.|+++++.+.++...|..|++..++.+..
T Consensus 17 ~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~~--------- 87 (819)
T TIGR01970 17 HPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENKV--------- 87 (819)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccccc---------
Confidence 57899999999999999999999876667799999999999999999998777765677888887764321
Q ss_pred hcCCceEEEechHhhhc----ccccCccceEEeeccccc------chhH-HHHHHhcCCCceEEEeccCCChHhHHHHHh
Q 006476 191 KHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRF------GVKQ-KEKIASFKISVDVLTLSATPIPRTLYLALT 259 (643)
Q Consensus 191 ~~g~~dIiI~T~~~L~~----~~~~~~l~llViDEah~~------g~~~-~~~l~~~~~~~~vl~lSATp~~~~~~~~~~ 259 (643)
..+.+|+|+|++.|.+ +..++++++|||||+|+. +... .+....++++.++|+||||+....+ ..
T Consensus 88 -s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~l---~~ 163 (819)
T TIGR01970 88 -SRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGERL---SS 163 (819)
T ss_pred -CCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHHH---HH
Confidence 1347899999998764 445789999999999962 2222 2233446788999999999976643 23
Q ss_pred cCCCcceeeCCCCCccceeEEEccCCHH-H----HHHHHHHHHh-cCCeEEEEecCccChHHHHHHHHhhC-CCCcEEEE
Q 006476 260 GFRDASLISTPPPERLPIKTHLSAFSKE-K----VISAIKYELD-RGGQVFYVLPRIKGLEEPMDFLQQAF-PGVDIAIA 332 (643)
Q Consensus 260 ~~~~~~~i~~~~~~~~~v~~~~~~~~~~-~----~~~~i~~~l~-~~~qvlvf~~~~~~~e~l~~~L~~~~-p~~~v~~~ 332 (643)
++.+..++..+ ...+|+..++...... . +...+...+. .+++++||+|+..+++.+++.|.+.+ +++.+..+
T Consensus 164 ~l~~~~vI~~~-gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pL 242 (819)
T TIGR01970 164 LLPDAPVVESE-GRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPL 242 (819)
T ss_pred HcCCCcEEEec-CcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 44555666543 3456777666544322 1 2233333333 36899999999999999999998754 47899999
Q ss_pred eCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCC---C--------------CHHHHHHHHhccC
Q 006476 333 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ---F--------------GLAQLYQLRGRVG 395 (643)
Q Consensus 333 hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~---~--------------s~~~~~Qr~GR~G 395 (643)
||+|++++|.++++.|++|..+||||||++++|||||+|++||+++.++ | |.+++.||+||+|
T Consensus 243 Hg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAG 322 (819)
T TIGR01970 243 YGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAG 322 (819)
T ss_pred cCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcC
Confidence 9999999999999999999999999999999999999999999988764 2 3457899999999
Q ss_pred CCCCceEEEEEecCCCCCcHHHHHHHHHHHHHhhcccchhhhhhhcccccCCCccCccccCCccchhhhhHHHHHHHHHh
Q 006476 396 RADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS 475 (643)
Q Consensus 396 R~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~~~~~~~~~~~l~~a~~ 475 (643)
|. ++|.||.+|++++... ........|.+.. + +++.+.++.+ |..+.........+....+..-.+.|. .+.
T Consensus 323 R~-~~G~cyrL~t~~~~~~-l~~~~~PEI~r~~-L-~~~~L~l~~~---g~~~~~~~~~l~~P~~~~i~~a~~~L~-~lg 394 (819)
T TIGR01970 323 RL-EPGVCYRLWSEEQHQR-LPAQDEPEILQAD-L-SGLALELAQW---GAKDPSDLRWLDAPPSVALAAARQLLQ-RLG 394 (819)
T ss_pred CC-CCCEEEEeCCHHHHHh-hhcCCCcceeccC-c-HHHHHHHHHc---CCCChhhCCCCCCcCHHHHHHHHHHHH-HCC
Confidence 99 7999999998654311 1111112222211 1 2344444333 444433334444444444454455553 455
Q ss_pred hhcCccccccCCcceeEeeccCCCCCccccCCCC
Q 006476 476 KVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509 (643)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 509 (643)
+++.+.. .|++|..++.+|+||.+++.++.+..
T Consensus 395 ald~~~~-lT~~G~~~~~lp~~p~l~~~ll~~~~ 427 (819)
T TIGR01970 395 ALDAQGR-LTAHGKAMAALGCHPRLAAMLLSAHS 427 (819)
T ss_pred CCCCCCC-cCHHHHHHHhcCCCHHHHHHHHHhhh
Confidence 6654433 57899999999999999998887643
No 43
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-41 Score=352.23 Aligned_cols=313 Identities=20% Similarity=0.217 Sum_probs=245.7
Q ss_pred ChhHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH--------------HCCCe
Q 006476 76 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV--------------SAGKQ 141 (643)
Q Consensus 76 ~~~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~--------------~~g~~ 141 (643)
.+++.++...++-.|||+|..++|++..+ ..|++..|.||||||++|-+|++..+ ..+++
T Consensus 190 ~~iL~aL~~~gFs~Pt~IQsl~lp~ai~g------k~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k 263 (731)
T KOG0347|consen 190 MEILRALSNLGFSRPTEIQSLVLPAAIRG------KVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVK 263 (731)
T ss_pred HHHHHHHHhcCCCCCccchhhcccHhhcc------chhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCc
Confidence 34899999999999999999999998762 37999999999999999999998732 12455
Q ss_pred --EEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc--------ccc
Q 006476 142 --AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR--------VVY 211 (643)
Q Consensus 142 --vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~--------~~~ 211 (643)
+||++|||+||.|+.+.+.. ...++++++..+.|+.....+.+.++ ..++|||+||++|... -.|
T Consensus 264 ~~~LV~tPTRELa~QV~~Hl~a-i~~~t~i~v~si~GGLavqKQqRlL~----~~p~IVVATPGRlweli~e~n~~l~~~ 338 (731)
T KOG0347|consen 264 PIALVVTPTRELAHQVKQHLKA-IAEKTQIRVASITGGLAVQKQQRLLN----QRPDIVVATPGRLWELIEEDNTHLGNF 338 (731)
T ss_pred ceeEEecChHHHHHHHHHHHHH-hccccCeEEEEeechhHHHHHHHHHh----cCCCEEEecchHHHHHHHhhhhhhhhh
Confidence 99999999999999999986 77788999999999887766665554 3689999999998642 257
Q ss_pred CccceEEeecccccch----hHH-HHHHh-----cCCCceEEEeccCCChHh----------------------HHHHHh
Q 006476 212 NNLGLLVVDEEQRFGV----KQK-EKIAS-----FKISVDVLTLSATPIPRT----------------------LYLALT 259 (643)
Q Consensus 212 ~~l~llViDEah~~g~----~~~-~~l~~-----~~~~~~vl~lSATp~~~~----------------------~~~~~~ 259 (643)
+++.++|+||+|||-- ... ..|+. .....|.+.+|||..-.- .-+...
T Consensus 339 k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~i 418 (731)
T KOG0347|consen 339 KKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKI 418 (731)
T ss_pred hhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHh
Confidence 8899999999999722 111 22222 245689999999963100 011122
Q ss_pred cCCCc-ceeeCCCCCccceeEEEccCCHHHHHHHHHHH------------H-hcCCeEEEEecCccChHHHHHHHHhhCC
Q 006476 260 GFRDA-SLISTPPPERLPIKTHLSAFSKEKVISAIKYE------------L-DRGGQVFYVLPRIKGLEEPMDFLQQAFP 325 (643)
Q Consensus 260 ~~~~~-~~i~~~~~~~~~v~~~~~~~~~~~~~~~i~~~------------l-~~~~qvlvf~~~~~~~e~l~~~L~~~~p 325 (643)
+++.. .+|...|... ....+.+....+ + .-.|.++||||+++.+.+++-.|..+
T Consensus 419 g~~~kpkiiD~t~q~~----------ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L-- 486 (731)
T KOG0347|consen 419 GFRGKPKIIDLTPQSA----------TASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL-- 486 (731)
T ss_pred CccCCCeeEecCcchh----------HHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc--
Confidence 33322 2332222111 011122222111 0 12589999999999999999999998
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEE
Q 006476 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYL 405 (643)
Q Consensus 326 ~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~ 405 (643)
++....+|+.|.+.+|-+-+++|++....||||||+++||+|||+|.+||+|..|+ +.+-|+||.||+.|++..|..++
T Consensus 487 ~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPr-tseiYVHRSGRTARA~~~Gvsvm 565 (731)
T KOG0347|consen 487 DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPR-TSEIYVHRSGRTARANSEGVSVM 565 (731)
T ss_pred CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCC-ccceeEecccccccccCCCeEEE
Confidence 88999999999999999999999999999999999999999999999999999999 88999999999999999999999
Q ss_pred EecCCCC
Q 006476 406 FYPDKSL 412 (643)
Q Consensus 406 l~~~~~~ 412 (643)
++.|.+.
T Consensus 566 l~~P~e~ 572 (731)
T KOG0347|consen 566 LCGPQEV 572 (731)
T ss_pred EeChHHh
Confidence 9998863
No 44
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-40 Score=332.33 Aligned_cols=319 Identities=22% Similarity=0.246 Sum_probs=261.6
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC---CCeEEEEeccHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAKQ 154 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~---g~~vlil~Pt~~La~Q 154 (643)
+++.+....+-.|+.+|..|+|-++. +.++++|.++..|+|||.+|.+.++..+.. -+|+++|+||++||.|
T Consensus 101 llkgly~M~F~kPskIQe~aLPlll~-----~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q 175 (477)
T KOG0332|consen 101 LLKGLYAMKFQKPSKIQETALPLLLA-----EPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQ 175 (477)
T ss_pred HHhHHHHhccCCcchHHHhhcchhhc-----CCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHH
Confidence 78888888889999999999999875 568999999999999999999999988754 5799999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc------ccccCccceEEeecccccchh
Q 006476 155 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDEEQRFGVK 228 (643)
Q Consensus 155 ~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~------~~~~~~l~llViDEah~~g~~ 228 (643)
+.+.+.+ +++|.++++.+..++... .+...+ ..+|+||||+.+.+ .+.+..+.++|+|||+.+-..
T Consensus 176 ~~eVv~e-MGKf~~ita~yair~sk~-~rG~~i------~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~t 247 (477)
T KOG0332|consen 176 TGEVVEE-MGKFTELTASYAIRGSKA-KRGNKL------TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDT 247 (477)
T ss_pred HHHHHHH-hcCceeeeEEEEecCccc-ccCCcc------hhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhc
Confidence 9999986 899888888888875411 111111 25899999997765 234577889999999987332
Q ss_pred H------HHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCC--ccceeEEEccC-CHHHHHHHHHHHHhc
Q 006476 229 Q------KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSAF-SKEKVISAIKYELDR 299 (643)
Q Consensus 229 ~------~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~--~~~v~~~~~~~-~~~~~~~~i~~~l~~ 299 (643)
+ ......++.+.|++++|||.......++.....++..+...... ..++.+++... ..+...+++.....-
T Consensus 248 qG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~ 327 (477)
T KOG0332|consen 248 QGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGL 327 (477)
T ss_pred ccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhh
Confidence 2 23334456699999999999999999999888888776654332 33555544333 344555665553332
Q ss_pred --CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEe
Q 006476 300 --GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 377 (643)
Q Consensus 300 --~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~ 377 (643)
-||.+|||.++.++..++..+... |..|.++||+|...+|..++.+|+.|..+|||+|++++||||++.|+.||||
T Consensus 328 ~tigqsiIFc~tk~ta~~l~~~m~~~--Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNy 405 (477)
T KOG0332|consen 328 LTIGQSIIFCHTKATAMWLYEEMRAE--GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNY 405 (477)
T ss_pred hhhhheEEEEeehhhHHHHHHHHHhc--CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEec
Confidence 389999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-----CCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 378 DVQQ-----FGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 378 d~p~-----~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
|.|. -+.+.|.||+||+||.|+.|.++-+++.+.
T Consensus 406 dlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 406 DLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred CCccccCCCCCHHHHHHHhcccccccccceEEEeecccC
Confidence 9873 146899999999999999999999998775
No 45
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-39 Score=334.04 Aligned_cols=329 Identities=20% Similarity=0.196 Sum_probs=262.5
Q ss_pred CCCCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---------CC
Q 006476 70 RPPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---------AG 139 (643)
Q Consensus 70 ~~~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---------~g 139 (643)
+..|..|+ +++++.+.+.-.||-+|..|||-++. ++|++..|-||||||.+|++|+++.+. .+
T Consensus 21 Fe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLE-------gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~ 93 (569)
T KOG0346|consen 21 FEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALE-------GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQG 93 (569)
T ss_pred HHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhc-------CcceeeeeccCCCchHHHHHHHHHHHHHhhhccccccc
Confidence 34577888 99999999999999999999999875 689999999999999999999987652 36
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCC-CceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc------cccC
Q 006476 140 KQAMVLAPTIVLAKQHFDVVSERFSKYP-DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYN 212 (643)
Q Consensus 140 ~~vlil~Pt~~La~Q~~~~~~~~~~~~~-~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~------~~~~ 212 (643)
..++||+||++||+|.|..+.+...-.+ .+++.-++...+..... ....+.++|||+||+.+... ..+.
T Consensus 94 ~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~----~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~ 169 (569)
T KOG0346|consen 94 PSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS----VALMDLPDIVVATPAKLLRHLAAGVLEYLD 169 (569)
T ss_pred ceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH----HHHccCCCeEEeChHHHHHHHhhccchhhh
Confidence 7899999999999999999876322211 36666666544444333 23346799999999988653 3457
Q ss_pred ccceEEeecccc---cchhH--HHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCcc---ceeEEEc--
Q 006476 213 NLGLLVVDEEQR---FGVKQ--KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL---PIKTHLS-- 282 (643)
Q Consensus 213 ~l~llViDEah~---~g~~~--~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~---~v~~~~~-- 282 (643)
.+.++|+||||- ||+.. +.....+++..|.++||||.......+-...++++.++.....+.. .+.++..
T Consensus 170 ~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~c 249 (569)
T KOG0346|consen 170 SLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKC 249 (569)
T ss_pred heeeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEe
Confidence 789999999997 46642 3445667889999999999988887777777888877765433221 2333332
Q ss_pred -cCCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccc
Q 006476 283 -AFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI 361 (643)
Q Consensus 283 -~~~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i 361 (643)
+.+.-.+.-++.+.---.|+.++|+|+++.|.++.-.|.+. |++..+++|.|+..-|-.++++|..|-++|+||||.
T Consensus 250 se~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqF--GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~ 327 (569)
T KOG0346|consen 250 SEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQF--GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDD 327 (569)
T ss_pred ccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHh--CcHhhhhcccccccchhhHHHHhhCcceeEEEEccC
Confidence 22333333344332223578999999999999999999887 999999999999999999999999999999999991
Q ss_pred -----------------------------------ccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEE
Q 006476 362 -----------------------------------VESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLF 406 (643)
Q Consensus 362 -----------------------------------~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l 406 (643)
.+||||+.+|++|+|||+|. +...|+||+||++|++++|.+..|
T Consensus 328 s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~-t~~sYIHRvGRTaRg~n~GtalSf 406 (569)
T KOG0346|consen 328 SADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPE-TVTSYIHRVGRTARGNNKGTALSF 406 (569)
T ss_pred ccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCC-chHHHHHhccccccCCCCCceEEE
Confidence 57899999999999999998 999999999999999999999999
Q ss_pred ecCCCC
Q 006476 407 YPDKSL 412 (643)
Q Consensus 407 ~~~~~~ 412 (643)
+.|.+.
T Consensus 407 v~P~e~ 412 (569)
T KOG0346|consen 407 VSPKEE 412 (569)
T ss_pred ecchHH
Confidence 998753
No 46
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.8e-39 Score=375.57 Aligned_cols=315 Identities=18% Similarity=0.193 Sum_probs=234.4
Q ss_pred hhHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CCCeEEEEeccHHHHHHH
Q 006476 77 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQH 155 (643)
Q Consensus 77 ~~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g~~vlil~Pt~~La~Q~ 155 (643)
.+.+.+.+.++..|+|+|.+|++.... .++|+++++|||||||++|.+|+++.+. .+.+++|++|+++|+.|+
T Consensus 11 ~~~~~l~~~g~~~l~~~Q~~ai~~~~~------~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~ 84 (720)
T PRK00254 11 RIKRVLKERGIEELYPPQAEALKSGVL------EGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEK 84 (720)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHh------CCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHH
Confidence 378889998888999999999986432 1589999999999999999999988754 578999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEeecccccchh--
Q 006476 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGVK-- 228 (643)
Q Consensus 156 ~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViDEah~~g~~-- 228 (643)
+++|.. +..+ ++++..++|..+... .. .++++|+|+||+.+... ..++++++||+||+|.++..
T Consensus 85 ~~~~~~-~~~~-g~~v~~~~Gd~~~~~--~~-----~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r 155 (720)
T PRK00254 85 YREFKD-WEKL-GLRVAMTTGDYDSTD--EW-----LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR 155 (720)
T ss_pred HHHHHH-Hhhc-CCEEEEEeCCCCCch--hh-----hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc
Confidence 999986 5555 799999999765432 11 14589999999976432 34689999999999987532
Q ss_pred ---HHHHHHhcCCCceEEEeccCCCh-HhHHHHHhcCCCcceeeCCCCCccceeEEE--------ccCC----HHHHHHH
Q 006476 229 ---QKEKIASFKISVDVLTLSATPIP-RTLYLALTGFRDASLISTPPPERLPIKTHL--------SAFS----KEKVISA 292 (643)
Q Consensus 229 ---~~~~l~~~~~~~~vl~lSATp~~-~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~--------~~~~----~~~~~~~ 292 (643)
....+.++..+.|++++|||+.. +.+.. +. +...+.. .....+....+ .... .......
T Consensus 156 g~~le~il~~l~~~~qiI~lSATl~n~~~la~-wl---~~~~~~~-~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
T PRK00254 156 GATLEMILTHMLGRAQILGLSATVGNAEELAE-WL---NAELVVS-DWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESL 230 (720)
T ss_pred hHHHHHHHHhcCcCCcEEEEEccCCCHHHHHH-Hh---CCccccC-CCCCCcceeeEecCCeeeccCcchhcchHHHHHH
Confidence 23345566778999999999853 22222 11 1111111 00111111100 0000 1223344
Q ss_pred HHHHHhcCCeEEEEecCccChHHHHHHHHhhC-------------------------------CCCcEEEEeCCCCHHHH
Q 006476 293 IKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF-------------------------------PGVDIAIAHGQQYSRQL 341 (643)
Q Consensus 293 i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~-------------------------------p~~~v~~~hg~~~~~~r 341 (643)
+...+..+++++||||+++.++.++..|.... -..+|+++||+|++++|
T Consensus 231 ~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR 310 (720)
T PRK00254 231 VYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTER 310 (720)
T ss_pred HHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHH
Confidence 55556678999999999999988876664321 01359999999999999
Q ss_pred HHHHHHHhcCCceEEEecccccccccccCCCEEEE-------ecCCCCCHHHHHHHHhccCCC--CCceEEEEEecCCC
Q 006476 342 EETMEKFAQGAIKILICTNIVESGLDIQNANTIIV-------QDVQQFGLAQLYQLRGRVGRA--DKEAHAYLFYPDKS 411 (643)
Q Consensus 342 ~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~-------~d~p~~s~~~~~Qr~GR~GR~--g~~g~a~~l~~~~~ 411 (643)
..+++.|++|.++|||||+++++|+|+|.+++||. ++.+.++..+|.||+|||||. +..|.|+++.++++
T Consensus 311 ~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 311 VLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999999999999999999999998888873 455556778999999999997 46799999987643
No 47
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=2.3e-38 Score=362.95 Aligned_cols=314 Identities=31% Similarity=0.373 Sum_probs=255.4
Q ss_pred cCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 85 ~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
..++.||+.|.+|++.+.+++ ..++.+++|+||||||++|+.++...+..|++++|++||++|+.|++++|++.|
T Consensus 140 ~~~~~Lt~~Q~~ai~~i~~~~----~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~f- 214 (679)
T PRK05580 140 FEPPTLNPEQAAAVEAIRAAA----GFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARF- 214 (679)
T ss_pred cCCCCCCHHHHHHHHHHHhcc----CCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh-
Confidence 446789999999999998743 357799999999999999999998888889999999999999999999999876
Q ss_pred CCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHH----------HHHH
Q 006476 165 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK----------EKIA 234 (643)
Q Consensus 165 ~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~----------~~l~ 234 (643)
+.++..++|+.+..++.+.|..+.+|.++|+|||++.+. ..++++++|||||+|.+++.+. ...+
T Consensus 215 ---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~r 289 (679)
T PRK05580 215 ---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVR 289 (679)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHH
Confidence 468999999999988888999999999999999999886 5689999999999999866432 1233
Q ss_pred hcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCc-cceeEEEc----------cCCHHHHHHHHHHHHhcCCeE
Q 006476 235 SFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER-LPIKTHLS----------AFSKEKVISAIKYELDRGGQV 303 (643)
Q Consensus 235 ~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~-~~v~~~~~----------~~~~~~~~~~i~~~l~~~~qv 303 (643)
....+.+++++||||+.+++.....|......+...+... .|....+. ..-...+.+.+.+.+.++.|+
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qv 369 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQV 369 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeE
Confidence 4457899999999999999888776654333232221111 22111111 011245788889999999999
Q ss_pred EEEecCc------------------------------------------------------------cChHHHHHHHHhh
Q 006476 304 FYVLPRI------------------------------------------------------------KGLEEPMDFLQQA 323 (643)
Q Consensus 304 lvf~~~~------------------------------------------------------------~~~e~l~~~L~~~ 323 (643)
++|+|++ ..++++++.|++.
T Consensus 370 ll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~ 449 (679)
T PRK05580 370 LLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAEL 449 (679)
T ss_pred EEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHh
Confidence 9998861 2578999999999
Q ss_pred CCCCcEEEEeCCCCH--HHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCC-----------CHHHHHHH
Q 006476 324 FPGVDIAIAHGQQYS--RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF-----------GLAQLYQL 390 (643)
Q Consensus 324 ~p~~~v~~~hg~~~~--~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~-----------s~~~~~Qr 390 (643)
||++++..+|+++.+ .++++++++|++|+.+|||+|+++++|+|+|+++.|++.|++.. ....|+|+
T Consensus 450 fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~ 529 (679)
T PRK05580 450 FPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQV 529 (679)
T ss_pred CCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHH
Confidence 999999999999864 67999999999999999999999999999999999988776531 12578999
Q ss_pred HhccCCCCCceEEEEEec
Q 006476 391 RGRVGRADKEAHAYLFYP 408 (643)
Q Consensus 391 ~GR~GR~g~~g~a~~l~~ 408 (643)
+||+||.+..|.+++...
T Consensus 530 ~GRagR~~~~g~viiqT~ 547 (679)
T PRK05580 530 AGRAGRAEKPGEVLIQTY 547 (679)
T ss_pred HhhccCCCCCCEEEEEeC
Confidence 999999999999997543
No 48
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-39 Score=337.39 Aligned_cols=329 Identities=21% Similarity=0.242 Sum_probs=236.9
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhHHhhcc--CCCCCcEEEEccCCCchHHHHHHHHHHHHHCC----CeEEEEeccHHHHH
Q 006476 80 AEFAAQFPYEPTPDQKKAFLDVERDLTE--RETPMDRLICGDVGFGKTEVALRAIFCVVSAG----KQAMVLAPTIVLAK 153 (643)
Q Consensus 80 ~~~~~~~~~~~tp~Q~~ai~~i~~~~~~--~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g----~~vlil~Pt~~La~ 153 (643)
..+.+++.-.+.|+|..+++.++..... ..+++|+.|.||||||||++|.+|+.+.+... -+++|++||++|+.
T Consensus 150 q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~ 229 (620)
T KOG0350|consen 150 QLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELAL 229 (620)
T ss_pred HHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHH
Confidence 3467788889999999999999875531 22478999999999999999999999988654 48999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhc-CCceEEEechHhhhccc------ccCccceEEeecccccc
Q 006476 154 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH-GHLNIIVGTHSLLGSRV------VYNNLGLLVVDEEQRFG 226 (643)
Q Consensus 154 Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~-g~~dIiI~T~~~L~~~~------~~~~l~llViDEah~~g 226 (643)
|++++|..+..+ .|+.|+.++|..+-.....++..... ..+||+|+||++|.+++ .++++.++|||||||++
T Consensus 230 QV~~~f~~~~~~-tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll 308 (620)
T KOG0350|consen 230 QVYDTFKRLNSG-TGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLL 308 (620)
T ss_pred HHHHHHHHhccC-CceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHH
Confidence 999999875444 48999999886655443333322221 23599999999998754 47899999999999964
Q ss_pred hhHHHH---------------------HHhc------------------CCCceEEEeccCCChHhHHHHHhcCCCccee
Q 006476 227 VKQKEK---------------------IASF------------------KISVDVLTLSATPIPRTLYLALTGFRDASLI 267 (643)
Q Consensus 227 ~~~~~~---------------------l~~~------------------~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i 267 (643)
....+. +... .+....+.+|||....-.......+..+.+.
T Consensus 309 ~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~ 388 (620)
T KOG0350|consen 309 DQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLF 388 (620)
T ss_pred HHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceE
Confidence 322110 0000 1122345566665322211122222222222
Q ss_pred eCC--CCCccceeEEE------cc--CCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC--CCCcEEEEeCC
Q 006476 268 STP--PPERLPIKTHL------SA--FSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF--PGVDIAIAHGQ 335 (643)
Q Consensus 268 ~~~--~~~~~~v~~~~------~~--~~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~--p~~~v~~~hg~ 335 (643)
.+. -..++.+...+ .+ +.+-.+...+ ...+..++++|+++++.+.+++..|+-.+ +..++..+.|+
T Consensus 389 ~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI--~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~ 466 (620)
T KOG0350|consen 389 HVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALI--TSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQ 466 (620)
T ss_pred EeecccceeeecChhhhhceeecccccchHhHHHHH--HHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhh
Confidence 111 11121111100 00 1111122222 22456899999999999999999998443 35677889999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCC
Q 006476 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 336 ~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~ 412 (643)
++...|.+.+++|..|+++||||+|+++||+|+.+++.|||||+|. +..+|+||+||++|+|+.|+||.+.+.++.
T Consensus 467 l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~-~~ktyVHR~GRTARAgq~G~a~tll~~~~~ 542 (620)
T KOG0350|consen 467 LNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPA-SDKTYVHRAGRTARAGQDGYAITLLDKHEK 542 (620)
T ss_pred hhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCc-hhhHHHHhhcccccccCCceEEEeeccccc
Confidence 9999999999999999999999999999999999999999999998 889999999999999999999999988753
No 49
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-39 Score=346.92 Aligned_cols=355 Identities=23% Similarity=0.317 Sum_probs=267.5
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC--------CCeEEEEeccH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--------GKQAMVLAPTI 149 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~--------g~~vlil~Pt~ 149 (643)
+++.+....+-.|||+|.+|+|.++. ..|++.|+|||||||++|..|++..+.. |-+++|+.||+
T Consensus 147 ll~nl~~~~F~~Pt~iq~~aipvfl~-------~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptr 219 (593)
T KOG0344|consen 147 LLENLQELGFDEPTPIQKQAIPVFLE-------KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTR 219 (593)
T ss_pred HHHhHhhCCCCCCCcccchhhhhhhc-------ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchH
Confidence 56688888888999999999999875 5899999999999999999999887643 46899999999
Q ss_pred HHHHHHHHHHHHHhc--CCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-------cccCccceEEee
Q 006476 150 VLAKQHFDVVSERFS--KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------VVYNNLGLLVVD 220 (643)
Q Consensus 150 ~La~Q~~~~~~~~~~--~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-------~~~~~l~llViD 220 (643)
+||.|++.++.+ +. ...+.++..........++... +....+||+|+||.++... +.+..+.++|+|
T Consensus 220 eLa~Qi~re~~k-~~~~~~t~~~a~~~~~~~~~~qk~a~---~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~d 295 (593)
T KOG0344|consen 220 ELAAQIYREMRK-YSIDEGTSLRAAQFSKPAYPSQKPAF---LSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVD 295 (593)
T ss_pred HHHHHHHHHHHh-cCCCCCCchhhhhcccccchhhccch---hHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeec
Confidence 999999999987 44 2224555555443323222111 1223479999999988653 356778899999
Q ss_pred cccccchh-----HHHH-HHhc-CCCceEEEeccCCChHhHHHHHhcCCCcceeeCC--CCCccceeEE-EccCCHHHHH
Q 006476 221 EEQRFGVK-----QKEK-IASF-KISVDVLTLSATPIPRTLYLALTGFRDASLISTP--PPERLPIKTH-LSAFSKEKVI 290 (643)
Q Consensus 221 Eah~~g~~-----~~~~-l~~~-~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~--~~~~~~v~~~-~~~~~~~~~~ 290 (643)
|+|++... |... +... .+++.+=+||||.+......+.....++..+... +.....+.+. +..-+.....
T Consensus 296 EaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~ 375 (593)
T KOG0344|consen 296 EADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKL 375 (593)
T ss_pred hHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHH
Confidence 99985322 2222 2222 3677778999998877766665554444333221 1111111111 1112233345
Q ss_pred HHHHHHHhcC--CeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccc
Q 006476 291 SAIKYELDRG--GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368 (643)
Q Consensus 291 ~~i~~~l~~~--~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDi 368 (643)
-+++..+..| ..++||+.+.+.+..++..|. .++++.|.++||..++.+|++++++|+.|+++||+||++++||+|+
T Consensus 376 lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf 454 (593)
T KOG0344|consen 376 LALRQLVASGFKPPVLIFVQSKERAKQLFEELE-IYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDF 454 (593)
T ss_pred HHHHHHHhccCCCCeEEEEecHHHHHHHHHHhh-hccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccc
Confidence 5566666655 689999999999999999997 5679999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCCCcHHHHHHHHHHHHHhhcccchhhhhhhcccccCCC
Q 006476 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448 (643)
Q Consensus 369 p~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~ 448 (643)
.++|.|||||.|. +..+|+||+||+||+|+.|.||+||++.+. .++..+.+.... +|+.+..+++.+++.+.
T Consensus 455 ~gvn~VInyD~p~-s~~syihrIGRtgRag~~g~Aitfytd~d~------~~ir~iae~~~~-sG~evpe~~m~~~k~~~ 526 (593)
T KOG0344|consen 455 KGVNLVINYDFPQ-SDLSYIHRIGRTGRAGRSGKAITFYTDQDM------PRIRSIAEVMEQ-SGCEVPEKIMGIKKLSR 526 (593)
T ss_pred cCcceEEecCCCc-hhHHHHHHhhccCCCCCCcceEEEeccccc------hhhhhHHHHHHH-cCCcchHHHHhhhhhhh
Confidence 9999999999998 778899999999999999999999998643 456666665444 89999999998887766
Q ss_pred ccCc
Q 006476 449 IFGE 452 (643)
Q Consensus 449 ~lg~ 452 (643)
..+.
T Consensus 527 ~~kk 530 (593)
T KOG0344|consen 527 LKKK 530 (593)
T ss_pred hhhh
Confidence 5443
No 50
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-38 Score=356.48 Aligned_cols=366 Identities=21% Similarity=0.242 Sum_probs=284.4
Q ss_pred HhcCCCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHc---CCCC----------CCCCCh-hHHHHHhcCCCCCCHHHHH
Q 006476 31 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK---QKRP----------PYPKNP-AIAEFAAQFPYEPTPDQKK 96 (643)
Q Consensus 31 l~~l~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~r~~---~~~~----------~~~~~~-~~~~~~~~~~~~~tp~Q~~ 96 (643)
+++.. ...+.+...-.-..+++++...++.|+.-.. .++. ..+... ++..+++.++-.|||+|.+
T Consensus 316 ~S~~~-~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~q 394 (997)
T KOG0334|consen 316 HSKIS-YEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQ 394 (997)
T ss_pred ccccc-chhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhh
Confidence 34443 3556666666677788888777777765432 1111 122333 5677777777799999999
Q ss_pred HHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH--------CCCeEEEEeccHHHHHHHHHHHHHHhcCCCC
Q 006476 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--------AGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 168 (643)
Q Consensus 97 ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~--------~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~ 168 (643)
|||+|+. ++|+|.+|-||||||++|++|++.++. +|+.++|++||++||.|+.+.+.. |....+
T Consensus 395 AiP~Ims-------GrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~k-f~k~l~ 466 (997)
T KOG0334|consen 395 AIPAIMS-------GRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRK-FLKLLG 466 (997)
T ss_pred hcchhcc-------CcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHH-HHhhcC
Confidence 9999965 799999999999999999999997753 478999999999999999999987 555568
Q ss_pred ceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccc--------ccCccceEEeeccccc---ch--hHHHHHHh
Q 006476 169 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV--------VYNNLGLLVVDEEQRF---GV--KQKEKIAS 235 (643)
Q Consensus 169 i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~--------~~~~l~llViDEah~~---g~--~~~~~l~~ 235 (643)
+++..++|+....+ ++..+++| +.|+||||++..+.+ .+.++-++|+||||++ |+ .....+..
T Consensus 467 ir~v~vygg~~~~~---qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~n 542 (997)
T KOG0334|consen 467 IRVVCVYGGSGISQ---QIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQN 542 (997)
T ss_pred ceEEEecCCccHHH---HHHHHhcC-CceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhh
Confidence 99999999766554 67788899 999999999886532 2345559999999995 33 33457888
Q ss_pred cCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCc--cceeEEEccCC-HHHH---HHHHHHHHhcCCeEEEEecC
Q 006476 236 FKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAFS-KEKV---ISAIKYELDRGGQVFYVLPR 309 (643)
Q Consensus 236 ~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~--~~v~~~~~~~~-~~~~---~~~i~~~l~~~~qvlvf~~~ 309 (643)
+++..|++++|||.+......+..-+..+..+....... ..+...+.... +... +..+..+....++++|||.+
T Consensus 543 lrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~ 622 (997)
T KOG0334|consen 543 LRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDK 622 (997)
T ss_pred cchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcC
Confidence 999999999999987766566655554333333221111 12333332222 2222 22333344558999999999
Q ss_pred ccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHH
Q 006476 310 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389 (643)
Q Consensus 310 ~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Q 389 (643)
.+.|+.+.+.|... ++.+..+||+.++.+|..++++|+++..++||||+++++|+|++++..|||||+|. ..++|+|
T Consensus 623 qe~~d~l~~~L~~a--g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pn-h~edyvh 699 (997)
T KOG0334|consen 623 QEKADALLRDLQKA--GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPN-HYEDYVH 699 (997)
T ss_pred chHHHHHHHHHHhc--CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccch-hHHHHHH
Confidence 99999999999977 88888899999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHhccCCCCCceEEEEEecCCCC
Q 006476 390 LRGRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 390 r~GR~GR~g~~g~a~~l~~~~~~ 412 (643)
|.||+||+|+.|.||+|.++++.
T Consensus 700 R~gRTgragrkg~AvtFi~p~q~ 722 (997)
T KOG0334|consen 700 RVGRTGRAGRKGAAVTFITPDQL 722 (997)
T ss_pred HhcccccCCccceeEEEeChHHh
Confidence 99999999999999999999543
No 51
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.5e-38 Score=337.56 Aligned_cols=319 Identities=19% Similarity=0.209 Sum_probs=260.3
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---CCCeEEEEeccHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTIVLAKQ 154 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---~g~~vlil~Pt~~La~Q 154 (643)
++..+....+-.||++|..|||.++. +||+||++..|+|||++|..+++..+. ...+.+|++|||++|.|
T Consensus 36 vl~glrrn~f~~ptkiQaaAIP~~~~-------kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQ 108 (980)
T KOG4284|consen 36 VLLGLRRNAFALPTKIQAAAIPAIFS-------KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQ 108 (980)
T ss_pred HHHHHHhhcccCCCchhhhhhhhhhc-------ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhH
Confidence 45566777778999999999999975 689999999999999999777776653 35799999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeecccccc---
Q 006476 155 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFG--- 226 (643)
Q Consensus 155 ~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDEah~~g--- 226 (643)
+.+++......|.|.++.++.|+...+.. +..+ .+++|+||||+++.. .++...++++|+||||.+.
T Consensus 109 I~~tv~~v~~sf~g~~csvfIGGT~~~~d---~~rl--k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~ 183 (980)
T KOG4284|consen 109 IKETVRKVAPSFTGARCSVFIGGTAHKLD---LIRL--KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTE 183 (980)
T ss_pred HHHHHHHhcccccCcceEEEecCchhhhh---hhhh--hhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchh
Confidence 99999986666789999999998765432 2223 357899999999864 3456889999999999862
Q ss_pred -h--hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCC--ccceeEEEccCCH-----HH---HHHHH
Q 006476 227 -V--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSAFSK-----EK---VISAI 293 (643)
Q Consensus 227 -~--~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~--~~~v~~~~~~~~~-----~~---~~~~i 293 (643)
+ .....+..++...|++++|||-+....+....+++++.++...... .+.+++++..... +. ....+
T Consensus 184 sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L 263 (980)
T KOG4284|consen 184 SFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKL 263 (980)
T ss_pred hHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHH
Confidence 1 2345677889999999999997666666667788999888764332 3455666544321 11 12222
Q ss_pred HHHHhc--CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCC
Q 006476 294 KYELDR--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 371 (643)
Q Consensus 294 ~~~l~~--~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v 371 (643)
...+.+ -.|.||||+....++.++..|... |+.+.++.|.|++.+|..+++.+++-..+|||+||..+||||-|++
T Consensus 264 ~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss--G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~v 341 (980)
T KOG4284|consen 264 THVFKSIPYVQALVFCDQISRAEPIATHLKSS--GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNV 341 (980)
T ss_pred HHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc--CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCcccc
Confidence 222222 268999999999999999999988 9999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 372 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 372 ~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
|.|||.|+|. +-..|.||+|||||.|..|.+++|+..+.
T Consensus 342 NLVVNiD~p~-d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 342 NLVVNIDAPA-DEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred ceEEecCCCc-chHHHHHHhhhcccccccceeEEEeccch
Confidence 9999999997 99999999999999999999999998664
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=5.5e-37 Score=346.76 Aligned_cols=309 Identities=18% Similarity=0.221 Sum_probs=221.8
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHH---------HHHHHHHH---H---CCCeEEEEeccHHHHH
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA---------LRAIFCVV---S---AGKQAMVLAPTIVLAK 153 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~---------l~~i~~~~---~---~g~~vlil~Pt~~La~ 153 (643)
.+++.|.++=.+++..+. .+++++++|+||||||++. +.+.+..+ . .+++++|++||++||.
T Consensus 160 ~l~~~~~~iQ~qil~~i~---~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~ 236 (675)
T PHA02653 160 PLASLQPDVQLKIFEAWI---SRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVR 236 (675)
T ss_pred cCCchhHHHHHHHHHHHH---hCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHH
Confidence 555554444444443332 2689999999999999983 22333322 1 3569999999999999
Q ss_pred HHHHHHHHHhc--CCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhH--
Q 006476 154 QHFDVVSERFS--KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQ-- 229 (643)
Q Consensus 154 Q~~~~~~~~~~--~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~-- 229 (643)
|+..++.+..+ .+.+..+.+..|+.+.. ...... ...+|+++|++... ..++++++|||||||++....
T Consensus 237 qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~----~~~t~~-k~~~Ilv~T~~L~l--~~L~~v~~VVIDEaHEr~~~~Dl 309 (675)
T PHA02653 237 LHSITLLKSLGFDEIDGSPISLKYGSIPDE----LINTNP-KPYGLVFSTHKLTL--NKLFDYGTVIIDEVHEHDQIGDI 309 (675)
T ss_pred HHHHHHHHHhCccccCCceEEEEECCcchH----Hhhccc-CCCCEEEEeCcccc--cccccCCEEEccccccCccchhH
Confidence 99999986543 23567788888876521 111111 23689999987422 357899999999999974322
Q ss_pred -HHHHHhcC-CCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCccceeEEEccCC-------------HHHHHHHHH
Q 006476 230 -KEKIASFK-ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFS-------------KEKVISAIK 294 (643)
Q Consensus 230 -~~~l~~~~-~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~-------------~~~~~~~i~ 294 (643)
...++... ...|+++||||++...... ...+.++..+..+.....|+..++.... ...+...+.
T Consensus 310 lL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~ 388 (675)
T PHA02653 310 IIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALK 388 (675)
T ss_pred HHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHH
Confidence 22333332 2358999999997654433 4566777777765433466766543211 112233333
Q ss_pred HHHh-cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHH-hcCCceEEEecccccccccccCCC
Q 006476 295 YELD-RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKF-AQGAIKILICTNIVESGLDIQNAN 372 (643)
Q Consensus 295 ~~l~-~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F-~~g~~~ILVaT~i~~~GiDip~v~ 372 (643)
.... .+++++||+|++.+++.+++.|.+..|++.+..+||+|++. ++++++| ++|+.+|||||+++++|||+|+++
T Consensus 389 ~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~ 466 (675)
T PHA02653 389 KYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNAT 466 (675)
T ss_pred HhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCee
Confidence 2222 35799999999999999999999877778999999999974 5777887 689999999999999999999999
Q ss_pred EEEEec---CCC--------CCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 373 TIIVQD---VQQ--------FGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 373 ~VI~~d---~p~--------~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
+||++| .|. .|.++|.||+|||||. ++|.||.++++++
T Consensus 467 ~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~ 515 (675)
T PHA02653 467 HVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDL 515 (675)
T ss_pred EEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHH
Confidence 999998 332 2778999999999999 7899999999875
No 53
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.3e-37 Score=343.13 Aligned_cols=290 Identities=32% Similarity=0.428 Sum_probs=233.3
Q ss_pred EEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCC
Q 006476 115 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 194 (643)
Q Consensus 115 li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~ 194 (643)
|+.|+||||||++|+.++...+..|++++|++|+++|+.|++++|++.| +.++.++++..+..++.+.|..+.+|+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~~g~ 76 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVKNGE 76 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHHcCC
Confidence 5789999999999999888888889999999999999999999999876 467889999999999999999999999
Q ss_pred ceEEEechHhhhcccccCccceEEeecccccchhHH----------HHHHhcCCCceEEEeccCCChHhHHHHHhcCCCc
Q 006476 195 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK----------EKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264 (643)
Q Consensus 195 ~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~----------~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~ 264 (643)
++|||||++.+. ..++++++|||||+|.+++++. ..+.....+.++|++||||..+++..+..+....
T Consensus 77 ~~IVVGTrsalf--~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g~~~~ 154 (505)
T TIGR00595 77 ILVVIGTRSALF--LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQKAYRL 154 (505)
T ss_pred CCEEECChHHHc--CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcCCeEE
Confidence 999999999886 4689999999999999865432 2233445789999999999999988877664322
Q ss_pred ceeeCCCCC-ccceeEEEc-------cCCHHHHHHHHHHHHhcCCeEEEEecCcc-------------------------
Q 006476 265 SLISTPPPE-RLPIKTHLS-------AFSKEKVISAIKYELDRGGQVFYVLPRIK------------------------- 311 (643)
Q Consensus 265 ~~i~~~~~~-~~~v~~~~~-------~~~~~~~~~~i~~~l~~~~qvlvf~~~~~------------------------- 311 (643)
..+...+.. ..|....+. ..-...+.+++.+.+.+++|+++|+|++.
T Consensus 155 ~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~ 234 (505)
T TIGR00595 155 LVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTY 234 (505)
T ss_pred eechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEE
Confidence 222111111 112111111 11234678899999999999999987631
Q ss_pred -----------------------------------ChHHHHHHHHhhCCCCcEEEEeCCCCHHHH--HHHHHHHhcCCce
Q 006476 312 -----------------------------------GLEEPMDFLQQAFPGVDIAIAHGQQYSRQL--EETMEKFAQGAIK 354 (643)
Q Consensus 312 -----------------------------------~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r--~~v~~~F~~g~~~ 354 (643)
.++++.+.|++.||+.++..+|++++...+ ++++++|++|+.+
T Consensus 235 h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ 314 (505)
T TIGR00595 235 HKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD 314 (505)
T ss_pred ecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC
Confidence 268999999999999999999999987655 8999999999999
Q ss_pred EEEecccccccccccCCCEEEEecCCC------C-----CHHHHHHHHhccCCCCCceEEEEE-ecCC
Q 006476 355 ILICTNIVESGLDIQNANTIIVQDVQQ------F-----GLAQLYQLRGRVGRADKEAHAYLF-YPDK 410 (643)
Q Consensus 355 ILVaT~i~~~GiDip~v~~VI~~d~p~------~-----s~~~~~Qr~GR~GR~g~~g~a~~l-~~~~ 410 (643)
|||+|+++++|+|+|++++|++.|++. | ....|+|++||+||.++.|.+++. +.++
T Consensus 315 ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 315 ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred EEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 999999999999999999998776652 1 246789999999999999999863 4444
No 54
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.7e-37 Score=338.05 Aligned_cols=313 Identities=21% Similarity=0.293 Sum_probs=256.1
Q ss_pred HHHHhcCCC-CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHH
Q 006476 80 AEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158 (643)
Q Consensus 80 ~~~~~~~~~-~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~ 158 (643)
..+.+.|.| .++|.|.++|..+++ ++|+++..|||.||+++|.+|++-. .+-+||++|..+|...+.+.
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~-------g~d~lvvmPTGgGKSlCyQiPAll~---~G~TLVVSPLiSLM~DQV~~ 76 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLS-------GKDTLVVMPTGGGKSLCYQIPALLL---EGLTLVVSPLISLMKDQVDQ 76 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHc-------CCcEEEEccCCCCcchHhhhHHHhc---CCCEEEECchHHHHHHHHHH
Confidence 345566666 889999999999976 5899999999999999999998765 55899999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEeeccccc---c----
Q 006476 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRF---G---- 226 (643)
Q Consensus 159 ~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViDEah~~---g---- 226 (643)
+... |+.+..+++..+..++...+..+..|..++++-+|++|... +.-..++++||||||+. |
T Consensus 77 l~~~-----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 77 LEAA-----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHc-----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccC
Confidence 9875 89999999999999999999999999999999999998753 23356789999999984 4
Q ss_pred --hhHHHHHHhcCCCceEEEeccCCChHhHHHHHhcC--CCcceeeCCCCCccceeEEEccCC--HHHHHHHHHHHHh-c
Q 006476 227 --VKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF--RDASLISTPPPERLPIKTHLSAFS--KEKVISAIKYELD-R 299 (643)
Q Consensus 227 --~~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~--~~~~~i~~~~~~~~~v~~~~~~~~--~~~~~~~i~~~l~-~ 299 (643)
+.....+....++++++++|||-.+.+.......+ .++.++.. ..+|.++...+.... ...+. .+..... .
T Consensus 152 P~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~-sfdRpNi~~~v~~~~~~~~q~~-fi~~~~~~~ 229 (590)
T COG0514 152 PDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRG-SFDRPNLALKVVEKGEPSDQLA-FLATVLPQL 229 (590)
T ss_pred HhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe-cCCCchhhhhhhhcccHHHHHH-HHHhhcccc
Confidence 23334444445689999999999998887665544 34333332 223333322222221 22222 3332222 3
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecC
Q 006476 300 GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 379 (643)
Q Consensus 300 ~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~ 379 (643)
++..+|||.|++.+|.++++|... |+++..+||+|+.++|+.+.++|..++.+|+|||..+++|||-||+++|||+|.
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~--g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKN--GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecC
Confidence 455899999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhccCCCCCceEEEEEecCCCC
Q 006476 380 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 380 p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~ 412 (643)
|. +++.|+|-+|||||.|..+.|+++|++.+.
T Consensus 308 P~-s~EsYyQE~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 308 PG-SIESYYQETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred CC-CHHHHHHHHhhccCCCCcceEEEeeccccH
Confidence 98 999999999999999999999999998864
No 55
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=7.2e-37 Score=345.79 Aligned_cols=317 Identities=21% Similarity=0.254 Sum_probs=255.4
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC--------CeEEEEeccH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--------KQAMVLAPTI 149 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g--------~~vlil~Pt~ 149 (643)
+++.|.+. +.+|||.|.+||+.+.+ |.|+|++||||||||++|++|++..+... -.+++++|.+
T Consensus 12 v~~~~~~~-~~~~t~~Q~~a~~~i~~-------G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 12 VREWFKRK-FTSLTPPQRYAIPEIHS-------GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLK 83 (814)
T ss_pred HHHHHHHh-cCCCCHHHHHHHHHHhC-------CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHH
Confidence 66667777 77999999999999965 78999999999999999999999876432 4799999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-------cccCccceEEeecc
Q 006476 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------VVYNNLGLLVVDEE 222 (643)
Q Consensus 150 ~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-------~~~~~l~llViDEa 222 (643)
+|...+..++....... |+.+.+-+|+.+..++..+. ...+||+|+||+.|.-. -.|.++.+|||||.
T Consensus 84 ALn~Di~~rL~~~~~~~-G~~v~vRhGDT~~~er~r~~----~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEi 158 (814)
T COG1201 84 ALNNDIRRRLEEPLREL-GIEVAVRHGDTPQSEKQKML----KNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEI 158 (814)
T ss_pred HHHHHHHHHHHHHHHHc-CCccceecCCCChHHhhhcc----CCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehh
Confidence 99999999998755544 89999999988877765543 35699999999977421 24689999999999
Q ss_pred ccc-----chh---HHHHHHhcCCCceEEEeccCCCh-HhHHHHHhcCC-CcceeeCCCCCccceeEEEccCC-------
Q 006476 223 QRF-----GVK---QKEKIASFKISVDVLTLSATPIP-RTLYLALTGFR-DASLISTPPPERLPIKTHLSAFS------- 285 (643)
Q Consensus 223 h~~-----g~~---~~~~l~~~~~~~~vl~lSATp~~-~~~~~~~~~~~-~~~~i~~~~~~~~~v~~~~~~~~------- 285 (643)
|.+ |+. ..+++..+..+.|.+++|||..+ .....++.+.. ...++.........+.......+
T Consensus 159 Hel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~ 238 (814)
T COG1201 159 HALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEEL 238 (814)
T ss_pred hhhhccccchhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccch
Confidence 986 332 24667777669999999999854 34445555555 44555544444444443332222
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccccc
Q 006476 286 KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 365 (643)
Q Consensus 286 ~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~G 365 (643)
.......+...+.+...++||+|++..+|.++..|++.++ ..+..+||.++.++|..+.++|++|+.+++|||+.++-|
T Consensus 239 ~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~-~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELG 317 (814)
T COG1201 239 WAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGP-DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELG 317 (814)
T ss_pred hHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcC-CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhc
Confidence 2345666777777788999999999999999999999853 789999999999999999999999999999999999999
Q ss_pred ccccCCCEEEEecCCCCCHHHHHHHHhccCCC-CCceEEEEEecC
Q 006476 366 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA-DKEAHAYLFYPD 409 (643)
Q Consensus 366 iDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~-g~~g~a~~l~~~ 409 (643)
||+.+++.||++++|+ +.+.+.||+||+|+. +.....+++..+
T Consensus 318 IDiG~vdlVIq~~SP~-sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 318 IDIGDIDLVIQLGSPK-SVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred cccCCceEEEEeCCcH-HHHHHhHhccccccccCCcccEEEEecC
Confidence 9999999999999998 999999999999987 555666665544
No 56
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-37 Score=313.56 Aligned_cols=322 Identities=22% Similarity=0.271 Sum_probs=265.9
Q ss_pred hhHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC---CCeEEEEeccHHHHH
Q 006476 77 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAK 153 (643)
Q Consensus 77 ~~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~---g~~vlil~Pt~~La~ 153 (643)
++++.+...++..|+.+|++||..+.+ |.|+.+++++|+|||.+|..+++..+.- ..++++++||++||.
T Consensus 36 ~LLrgiy~yGFekPSaIQqraI~p~i~-------G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~ 108 (397)
T KOG0327|consen 36 SLLRGIYAYGFEKPSAIQQRAILPCIK-------GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQ 108 (397)
T ss_pred HHHhHHHhhccCCchHHHhcccccccc-------CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHH
Confidence 388899999999999999999988865 6899999999999999999999887532 468999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccc-----ccCccceEEeeccccc---
Q 006476 154 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQRF--- 225 (643)
Q Consensus 154 Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~-----~~~~l~llViDEah~~--- 225 (643)
|..+.+.. ++.+.+.++..+.|+......... +..-.++|++|||+++.+.+ ..+.+.+.|+||++++
T Consensus 109 qi~~v~~~-lg~~~~~~v~~~igg~~~~~~~~~---i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~ 184 (397)
T KOG0327|consen 109 QIQKVVRA-LGDHMDVSVHACIGGTNVRREDQA---LLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSR 184 (397)
T ss_pred HHHHHHHh-hhcccceeeeeecCcccchhhhhh---hhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhcc
Confidence 99977765 666667899888887665433222 23334899999999887654 4466899999999986
Q ss_pred ch--hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCcc--ceeEEEccCCHHHHHHHHHHHHhcCC
Q 006476 226 GV--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL--PIKTHLSAFSKEKVISAIKYELDRGG 301 (643)
Q Consensus 226 g~--~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~--~v~~~~~~~~~~~~~~~i~~~l~~~~ 301 (643)
|+ .....+..+++++|++++|||.++..+......++++..+........ .+..++....++...+.+.....+-.
T Consensus 185 gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~~~~ 264 (397)
T KOG0327|consen 185 GFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYRRVT 264 (397)
T ss_pred chHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHHhhh
Confidence 43 234556778899999999999999999999999998887766433311 12233322233335555555555678
Q ss_pred eEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCC
Q 006476 302 QVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 381 (643)
Q Consensus 302 qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~ 381 (643)
|.++|||+.+.+..+...|... +..+..+||+|.+.+|+.++..|+.|..+|||+|+.+++|+|+.++..||+|+.|.
T Consensus 265 q~~if~nt~r~v~~l~~~L~~~--~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~ 342 (397)
T KOG0327|consen 265 QAVIFCNTRRKVDNLTDKLRAH--GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPA 342 (397)
T ss_pred cceEEecchhhHHHHHHHHhhC--CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecccc
Confidence 9999999999999999999766 89999999999999999999999999999999999999999999999999999998
Q ss_pred CCHHHHHHHHhccCCCCCceEEEEEecCCCC
Q 006476 382 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 382 ~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~ 412 (643)
....|.||+||+||.|++|.++.+++.++.
T Consensus 343 -~~~~yihR~gr~gr~grkg~~in~v~~~d~ 372 (397)
T KOG0327|consen 343 -RKENYIHRIGRAGRFGRKGVAINFVTEEDV 372 (397)
T ss_pred -chhhhhhhcccccccCCCceeeeeehHhhH
Confidence 899999999999999999999999987754
No 57
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-37 Score=315.63 Aligned_cols=328 Identities=21% Similarity=0.226 Sum_probs=269.8
Q ss_pred CCCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC----CCeEEEE
Q 006476 71 PPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVL 145 (643)
Q Consensus 71 ~~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~----g~~vlil 145 (643)
..+..+. ..+++.+.++..|||+|++.||.++. +.|++..+-||||||.+|++|+++.+.. |-+++++
T Consensus 24 qsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe-------~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralil 96 (529)
T KOG0337|consen 24 QSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILE-------GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALIL 96 (529)
T ss_pred cccCCCHHHHHHHHHhhcCCCCchhcccccceee-------ccccceeeecCCcchhhHHHHHHHHHhhccccccceeec
Confidence 3456666 88999999999999999999999986 5899999999999999999999988765 4599999
Q ss_pred eccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEee
Q 006476 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVD 220 (643)
Q Consensus 146 ~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViD 220 (643)
+||++||.|..+.+++ ++.+.++++.++.|+.+.. +++..+. +++|||++||+++.. .+.++.+.+||+|
T Consensus 97 sptreLa~qtlkvvkd-lgrgt~lr~s~~~ggD~~e---eqf~~l~-~npDii~ATpgr~~h~~vem~l~l~sveyVVfd 171 (529)
T KOG0337|consen 97 SPTRELALQTLKVVKD-LGRGTKLRQSLLVGGDSIE---EQFILLN-ENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFD 171 (529)
T ss_pred cCcHHHHHHHHHHHHH-hccccchhhhhhcccchHH---HHHHHhc-cCCCEEEecCceeeeeehheeccccceeeeeeh
Confidence 9999999999999986 8888889999888865444 4565554 348999999998864 3567889999999
Q ss_pred ccccc---ch--hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCccc--eeEEEccCCHHHHHHHH
Q 006476 221 EEQRF---GV--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP--IKTHLSAFSKEKVISAI 293 (643)
Q Consensus 221 Eah~~---g~--~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~~--v~~~~~~~~~~~~~~~i 293 (643)
|++++ |+ +..+.+.+++.+.|++.||||.+..-...+..|+.++..+...-..... .+........+....++
T Consensus 172 Eadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaL 251 (529)
T KOG0337|consen 172 EADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAAL 251 (529)
T ss_pred hhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHH
Confidence 99984 54 3357788999999999999998777778889999888777643222221 11111112222333333
Q ss_pred HHHH---hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccC
Q 006476 294 KYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370 (643)
Q Consensus 294 ~~~l---~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~ 370 (643)
...+ ....++++|+++..+++.+...|... ++.+..++|.|.+..|..-..+|+.++..+||.|++++||+|+|-
T Consensus 252 l~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~--g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~dipl 329 (529)
T KOG0337|consen 252 LSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF--GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPL 329 (529)
T ss_pred HHHHhccccccceeEEecccchHHHHHHHHHhc--CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcc
Confidence 3333 23458999999999999999999988 889999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCCC
Q 006476 371 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLL 413 (643)
Q Consensus 371 v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~~ 413 (643)
.+.|||||.|. +..-|+||+||+.|+|+.|.+|.++.+++..
T Consensus 330 ldnvinyd~p~-~~klFvhRVgr~aragrtg~aYs~V~~~~~~ 371 (529)
T KOG0337|consen 330 LDNVINYDFPP-DDKLFVHRVGRVARAGRTGRAYSLVASTDDP 371 (529)
T ss_pred ccccccccCCC-CCceEEEEecchhhccccceEEEEEecccch
Confidence 99999999997 7888999999999999999999999887653
No 58
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.7e-35 Score=328.60 Aligned_cols=303 Identities=16% Similarity=0.180 Sum_probs=214.0
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK-QAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~-~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
...|+|+|.+|++.+++ +.+.++++|||+|||.++...+...+..++ ++|||+||++|+.||.+++.+ +..
T Consensus 112 ~~~~r~~Q~~av~~~l~-------~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~-~~~ 183 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK-------NNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVD-YRL 183 (501)
T ss_pred cCCCCHHHHHHHHHHHh-------cCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHH-hcc
Confidence 46999999999998875 356899999999999987654433344444 999999999999999999987 555
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccc--ccCccceEEeecccccchhHHH-HHHhcCCCceE
Q 006476 166 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV--VYNNLGLLVVDEEQRFGVKQKE-KIASFKISVDV 242 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~--~~~~l~llViDEah~~g~~~~~-~l~~~~~~~~v 242 (643)
.+...+..+.++.... ...+|+|+|++.+.+.. .++++++||+||||++...... .+..+++..++
T Consensus 184 ~~~~~~~~i~~g~~~~-----------~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~~~~~~il~~~~~~~~~ 252 (501)
T PHA02558 184 FPREAMHKIYSGTAKD-----------TDAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTGKSLTSIITKLDNCKFK 252 (501)
T ss_pred ccccceeEEecCcccC-----------CCCCEEEeeHHHHhhchhhhccccCEEEEEchhcccchhHHHHHHhhhccceE
Confidence 4444554554433221 23689999999987543 4689999999999998655443 34555566789
Q ss_pred EEeccCCChHhH-HHHHhcCCCcceeeCC-----CCCc-ccee--EEE-------------ccCC------------HHH
Q 006476 243 LTLSATPIPRTL-YLALTGFRDASLISTP-----PPER-LPIK--THL-------------SAFS------------KEK 288 (643)
Q Consensus 243 l~lSATp~~~~~-~~~~~~~~~~~~i~~~-----~~~~-~~v~--~~~-------------~~~~------------~~~ 288 (643)
++|||||..... .....++.++...... .... .+.. ... ..+. ...
T Consensus 253 lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~ 332 (501)
T PHA02558 253 FGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKW 332 (501)
T ss_pred EEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHH
Confidence 999999954321 1111111111000000 0000 0000 000 0000 011
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEec-cccccccc
Q 006476 289 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICT-NIVESGLD 367 (643)
Q Consensus 289 ~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT-~i~~~GiD 367 (643)
+...+......+.+++||++++++++.+++.|... +.++..+||+|+..+|+.+++.|++|+..||||| +++++|+|
T Consensus 333 I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~--g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~D 410 (501)
T PHA02558 333 IANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKV--YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGIS 410 (501)
T ss_pred HHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccc
Confidence 22233333346788999999999999999999987 7899999999999999999999999999999998 89999999
Q ss_pred ccCCCEEEEecCCCCCHHHHHHHHhccCCCCCce---EEEEEecCCC
Q 006476 368 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA---HAYLFYPDKS 411 (643)
Q Consensus 368 ip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g---~a~~l~~~~~ 411 (643)
+|++++||+.+++. +...|.||+||++|.+..+ ..|-+++.-.
T Consensus 411 ip~ld~vIl~~p~~-s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 411 IKNLHHVIFAHPSK-SKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred cccccEEEEecCCc-chhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 99999999888887 8899999999999986433 3444555433
No 59
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=8.6e-36 Score=338.82 Aligned_cols=311 Identities=16% Similarity=0.181 Sum_probs=214.1
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCC-cEEEEccCCCchHHHHHHHHHHHH--HCCCeEEE-EeccHHHHHH
Q 006476 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPM-DRLICGDVGFGKTEVALRAIFCVV--SAGKQAMV-LAPTIVLAKQ 154 (643)
Q Consensus 79 ~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~-d~li~a~TGsGKT~~~l~~i~~~~--~~g~~vli-l~Pt~~La~Q 154 (643)
-+.|.+...|+|||+|.++|+.++. ++ +.++++|||||||.++..+.+... ....+.+| ++|||+||.|
T Consensus 5 ~~ff~~~~G~~PtpiQ~~~i~~il~-------G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Q 77 (844)
T TIGR02621 5 DEWYQGLHGYSPFPWQLSLAERFVA-------GQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQ 77 (844)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHc-------CCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHH
Confidence 3455665677899999999999875 34 678889999999986543333211 12344555 7799999999
Q ss_pred HHHHHHHHhcCC----------------------CCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccc--
Q 006476 155 HFDVVSERFSKY----------------------PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-- 210 (643)
Q Consensus 155 ~~~~~~~~~~~~----------------------~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~-- 210 (643)
+++++.+....+ .++++..++|+.+... ++..+..+ ++|||||+..+.+...
T Consensus 78 i~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~---q~~~l~~~-p~IIVgT~D~i~sr~L~~ 153 (844)
T TIGR02621 78 VTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADND---EWMLDPHR-PAVIVGTVDMIGSRLLFS 153 (844)
T ss_pred HHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHH---HHHhcCCC-CcEEEECHHHHcCCcccc
Confidence 999998744322 1488999999876544 56667666 8999999877654332
Q ss_pred ---------------cCccceEEeecccc-cchh-HHHH-HHhc--CC---CceEEEeccCCChHhHHHHHhcCCCccee
Q 006476 211 ---------------YNNLGLLVVDEEQR-FGVK-QKEK-IASF--KI---SVDVLTLSATPIPRTLYLALTGFRDASLI 267 (643)
Q Consensus 211 ---------------~~~l~llViDEah~-~g~~-~~~~-l~~~--~~---~~~vl~lSATp~~~~~~~~~~~~~~~~~i 267 (643)
++++.++|+||||. +++. .... ++.. ++ +.|+++||||++............+...+
T Consensus 154 gYg~~~~~~pi~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i 233 (844)
T TIGR02621 154 GYGCGFKSRPLHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKH 233 (844)
T ss_pred ccccccccccchhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCcee
Confidence 57889999999994 2332 2233 3322 22 26999999999765554443333333333
Q ss_pred eCCCCCcc--ceeEEEccCCHHH---HHHHHHHHH-hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHH
Q 006476 268 STPPPERL--PIKTHLSAFSKEK---VISAIKYEL-DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQL 341 (643)
Q Consensus 268 ~~~~~~~~--~v~~~~~~~~~~~---~~~~i~~~l-~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r 341 (643)
........ .+..++....... +...+...+ ..+++++||||+++.++.+++.|+.. ++ ..+||+|++.+|
T Consensus 234 ~V~~~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~--g~--~lLHG~m~q~dR 309 (844)
T TIGR02621 234 PVLKKRLAAKKIVKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE--KF--ELLTGTLRGAER 309 (844)
T ss_pred ecccccccccceEEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc--CC--eEeeCCCCHHHH
Confidence 22211111 1222222112211 122222222 35689999999999999999999876 44 899999999999
Q ss_pred H-----HHHHHHhc----CC-------ceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCce-EEE
Q 006476 342 E-----ETMEKFAQ----GA-------IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA-HAY 404 (643)
Q Consensus 342 ~-----~v~~~F~~----g~-------~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g-~a~ 404 (643)
+ +++++|++ |. .+|||||+++++||||+. ++||++.+| .++|+||+||+||.|+.| .++
T Consensus 310 ~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP---~esyIQRiGRtgR~G~~~~~~i 385 (844)
T TIGR02621 310 DDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP---FESMQQRFGRVNRFGELQACQI 385 (844)
T ss_pred hhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC---HHHHHHHhcccCCCCCCCCceE
Confidence 9 88999987 44 689999999999999995 899987655 589999999999998753 334
Q ss_pred EEec
Q 006476 405 LFYP 408 (643)
Q Consensus 405 ~l~~ 408 (643)
.+++
T Consensus 386 ~vv~ 389 (844)
T TIGR02621 386 AVVH 389 (844)
T ss_pred EEEe
Confidence 4443
No 60
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.5e-35 Score=306.16 Aligned_cols=309 Identities=21% Similarity=0.286 Sum_probs=228.2
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC-CCeEEEEeccHHHHHHHHHHHHHHhcCC
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHFDVVSERFSKY 166 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-g~~vlil~Pt~~La~Q~~~~~~~~~~~~ 166 (643)
.+++.+|.......+. .|.|++.|||-|||.++++.+...+.. ++++++|+||+-|+.||++.|.+ +-..
T Consensus 14 ie~R~YQ~~i~a~al~--------~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~-v~~i 84 (542)
T COG1111 14 IEPRLYQLNIAAKALF--------KNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRK-VTGI 84 (542)
T ss_pred ccHHHHHHHHHHHHhh--------cCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHH-HhCC
Confidence 4888999998776654 589999999999999998888766544 44799999999999999999997 4455
Q ss_pred CCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEeeccccc-chh----HHHHHHhc
Q 006476 167 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRF-GVK----QKEKIASF 236 (643)
Q Consensus 167 ~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViDEah~~-g~~----~~~~l~~~ 236 (643)
|.-.++.++|...+.++...|. +.+|+|+||+.+.++ ++..++.++|+|||||- |.. ..+...+.
T Consensus 85 p~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~ 159 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS 159 (542)
T ss_pred ChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHh
Confidence 5678999999999999998885 468999999988654 46788999999999994 321 22333444
Q ss_pred CCCceEEEeccCCChHhHH--HHH--hc---------------------------------------------------C
Q 006476 237 KISVDVLTLSATPIPRTLY--LAL--TG---------------------------------------------------F 261 (643)
Q Consensus 237 ~~~~~vl~lSATp~~~~~~--~~~--~~---------------------------------------------------~ 261 (643)
..+..+++|||||...... ... .+ +
T Consensus 160 ~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L 239 (542)
T COG1111 160 AKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPL 239 (542)
T ss_pred ccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999998531110 000 00 0
Q ss_pred CCcceeeCCC-------------------C-Cc--c-------------------------ceeEEE-------------
Q 006476 262 RDASLISTPP-------------------P-ER--L-------------------------PIKTHL------------- 281 (643)
Q Consensus 262 ~~~~~i~~~~-------------------~-~~--~-------------------------~v~~~~------------- 281 (643)
.+..++.... . +. . +...|+
T Consensus 240 ~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk 319 (542)
T COG1111 240 KELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSK 319 (542)
T ss_pred HHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchH
Confidence 0000000000 0 00 0 000000
Q ss_pred --------------------------ccCCHHHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEE-
Q 006476 282 --------------------------SAFSKEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA- 332 (643)
Q Consensus 282 --------------------------~~~~~~~~~~~i~~~l~--~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~- 332 (643)
....-+.+.+.+.+.+. .+..++||.+.+++++.+.+.|....+.+++.++
T Consensus 320 ~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiG 399 (542)
T COG1111 320 AAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIG 399 (542)
T ss_pred HHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEee
Confidence 00000112333344442 3468999999999999999999999776652332
Q ss_pred ------eCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEE
Q 006476 333 ------HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLF 406 (643)
Q Consensus 333 ------hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l 406 (643)
..||++.++.+++++|++|+++|||||+++++|+|||.++.||.|++.+ |...++||.|||||. +.|.+|++
T Consensus 400 Qa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvp-SeIR~IQR~GRTGR~-r~Grv~vL 477 (542)
T COG1111 400 QASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVP-SEIRSIQRKGRTGRK-RKGRVVVL 477 (542)
T ss_pred ccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCc-HHHHHHHhhCccccC-CCCeEEEE
Confidence 2469999999999999999999999999999999999999999999988 899999999999998 89999999
Q ss_pred ecCCCC
Q 006476 407 YPDKSL 412 (643)
Q Consensus 407 ~~~~~~ 412 (643)
++....
T Consensus 478 vt~gtr 483 (542)
T COG1111 478 VTEGTR 483 (542)
T ss_pred EecCch
Confidence 998743
No 61
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.2e-35 Score=351.31 Aligned_cols=287 Identities=16% Similarity=0.174 Sum_probs=208.9
Q ss_pred EEccCCCchHHHHHHHHHHHHH-------------CCCeEEEEeccHHHHHHHHHHHHHHh----------cC-CCCceE
Q 006476 116 ICGDVGFGKTEVALRAIFCVVS-------------AGKQAMVLAPTIVLAKQHFDVVSERF----------SK-YPDIKV 171 (643)
Q Consensus 116 i~a~TGsGKT~~~l~~i~~~~~-------------~g~~vlil~Pt~~La~Q~~~~~~~~~----------~~-~~~i~v 171 (643)
|++|||||||++|++|++..+. ++.+++||+|+++|+.|++++++..+ +. .++++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999887653 24689999999999999999986422 11 247899
Q ss_pred EEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc------cccCccceEEeecccccch-----h---HHHHHHhc-
Q 006476 172 GLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNLGLLVVDEEQRFGV-----K---QKEKIASF- 236 (643)
Q Consensus 172 ~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~------~~~~~l~llViDEah~~g~-----~---~~~~l~~~- 236 (643)
...+|+.+..++...+ ...+||+|+||+.|... ..++++++|||||+|.+.- . ..+.+..+
T Consensus 81 ~vrtGDt~~~eR~rll----~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~ 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLT----RNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL 156 (1490)
T ss_pred EEEECCCCHHHHHHHh----cCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC
Confidence 9999988777654432 24589999999987532 2478999999999998732 1 23445444
Q ss_pred CCCceEEEeccCCChHhH-HHHHhcCCCcceeeCCCCC-ccceeEEEccCCH-----------------------HHHHH
Q 006476 237 KISVDVLTLSATPIPRTL-YLALTGFRDASLISTPPPE-RLPIKTHLSAFSK-----------------------EKVIS 291 (643)
Q Consensus 237 ~~~~~vl~lSATp~~~~~-~~~~~~~~~~~~i~~~~~~-~~~v~~~~~~~~~-----------------------~~~~~ 291 (643)
..+.|+|++|||..+... ...+.+ ..+..+..++.. ..++...+...+. ..+..
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g-~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGG-DRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcC-CCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 467899999999865322 222222 222222222222 2222222211110 01222
Q ss_pred HHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC-------------------------------CCcEEEEeCCCCHHH
Q 006476 292 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP-------------------------------GVDIAIAHGQQYSRQ 340 (643)
Q Consensus 292 ~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p-------------------------------~~~v~~~hg~~~~~~ 340 (643)
.+...+..+.++|||||++..++.++..|.+..+ ...+.++||+|++++
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 3444455678999999999999999999976531 122678999999999
Q ss_pred HHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCC-CCceEEEEEec
Q 006476 341 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA-DKEAHAYLFYP 408 (643)
Q Consensus 341 r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~-g~~g~a~~l~~ 408 (643)
|..+++.|++|++++||||+.++.|||++++++||+++.|. +.++|.||+||+||. |..+.++++..
T Consensus 316 R~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~-sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 316 RAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPL-SVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred HHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCC-CHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 99999999999999999999999999999999999999997 999999999999997 44456664443
No 62
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=332.24 Aligned_cols=315 Identities=22% Similarity=0.310 Sum_probs=234.5
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC-CCeEEEEeccHHHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHF 156 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-g~~vlil~Pt~~La~Q~~ 156 (643)
..+-+...++-++.|.|+.++....- + +.|+|||+|||||||+++++++++.+.+ +.+++++||+++||.|.+
T Consensus 20 v~~i~~~~~~~el~~~qq~av~~~~~----~--~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~ 93 (766)
T COG1204 20 VLEILKGDGIDELFNPQQEAVEKGLL----S--DENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKY 93 (766)
T ss_pred HHHHhccCChHHhhHHHHHHhhcccc----C--CCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHH
Confidence 33444444444899999999877653 1 6899999999999999999999999887 589999999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhh----c-ccccCccceEEeecccccchhH--
Q 006476 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG----S-RVVYNNLGLLVVDEEQRFGVKQ-- 229 (643)
Q Consensus 157 ~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~----~-~~~~~~l~llViDEah~~g~~~-- 229 (643)
++|+ +|..+ |++|+..+|+..... +.+ .+++|+|+||+.+- + .....++++|||||+|..+...
T Consensus 94 ~~~~-~~~~~-GirV~~~TgD~~~~~--~~l-----~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG 164 (766)
T COG1204 94 EEFS-RLEEL-GIRVGISTGDYDLDD--ERL-----ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRG 164 (766)
T ss_pred HHhh-hHHhc-CCEEEEecCCcccch--hhh-----ccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccC
Confidence 9999 67777 899999999765433 112 45899999999774 2 2234789999999999876542
Q ss_pred ------HHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCccee--eCCCCC---ccceeEEE--c--------cCCHHH
Q 006476 230 ------KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI--STPPPE---RLPIKTHL--S--------AFSKEK 288 (643)
Q Consensus 230 ------~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i--~~~~~~---~~~v~~~~--~--------~~~~~~ 288 (643)
..+........+++++|||.+.-..-- .|.+...+ ..+|.. ..+....+ . ....+.
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA---~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~ 241 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPNAEEVA---DWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNL 241 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCCHHHHH---HHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHH
Confidence 233344455689999999975433221 22222211 111111 11111111 1 112356
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC-------------------C----------------CCcEEEEe
Q 006476 289 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF-------------------P----------------GVDIAIAH 333 (643)
Q Consensus 289 ~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~-------------------p----------------~~~v~~~h 333 (643)
....+...+..++|++|||++++.+...+..|...+ . ..++++||
T Consensus 242 ~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHh 321 (766)
T COG1204 242 ALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHH 321 (766)
T ss_pred HHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccc
Confidence 777888889999999999999999999998887311 0 02689999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCC---------HHHHHHHHhccCCCC--CceE
Q 006476 334 GQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG---------LAQLYQLRGRVGRAD--KEAH 402 (643)
Q Consensus 334 g~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s---------~~~~~Qr~GR~GR~g--~~g~ 402 (643)
++++.++|..+.+.|+.|.++|||||++++.|+|.| +++||+-|...|+ ..++.|+.|||||.| ..|.
T Consensus 322 AGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~ 400 (766)
T COG1204 322 AGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGE 400 (766)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCc-ceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCc
Confidence 999999999999999999999999999999999999 8999986544433 568999999999995 5688
Q ss_pred EEEEecCCC
Q 006476 403 AYLFYPDKS 411 (643)
Q Consensus 403 a~~l~~~~~ 411 (643)
++++.+..+
T Consensus 401 ~~i~~~~~~ 409 (766)
T COG1204 401 AIILATSHD 409 (766)
T ss_pred EEEEecCcc
Confidence 888875543
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.3e-33 Score=303.38 Aligned_cols=290 Identities=20% Similarity=0.203 Sum_probs=198.6
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHC--CCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChH---------
Q 006476 113 DRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKA--------- 181 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~~i~~~~~~--g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~--------- 181 (643)
+++++||||||||++|+.+++..+.. +.+++|++|+++|+.|+++++.+.|+. +++.+++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCCch
Confidence 57999999999999999999987643 579999999999999999999987653 344444432210
Q ss_pred HHHHHHHHHhc-----CCceEEEechHhhhcccc---------cC--ccceEEeecccccchhHH----HHHHhc-CCCc
Q 006476 182 EKEEHLDMIKH-----GHLNIIVGTHSLLGSRVV---------YN--NLGLLVVDEEQRFGVKQK----EKIASF-KISV 240 (643)
Q Consensus 182 ~~~~~~~~l~~-----g~~dIiI~T~~~L~~~~~---------~~--~l~llViDEah~~g~~~~----~~l~~~-~~~~ 240 (643)
.....+..... -..+|+++||+.+...+. +. ..++||+||+|.+..... ..+..+ ..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~ 156 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDV 156 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 00111111111 125799999998754221 11 237899999999754322 122222 3578
Q ss_pred eEEEeccCCChHhHHHHHhcCCCcceeeCCCC-----CccceeEEEcc-CCHHHHHHHHHHHHhcCCeEEEEecCccChH
Q 006476 241 DVLTLSATPIPRTLYLALTGFRDASLISTPPP-----ERLPIKTHLSA-FSKEKVISAIKYELDRGGQVFYVLPRIKGLE 314 (643)
Q Consensus 241 ~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~-----~~~~v~~~~~~-~~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e 314 (643)
|+++||||++...................+.. .+.++...... .........+.+....+++++||||+++.++
T Consensus 157 ~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~ 236 (358)
T TIGR01587 157 PILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQ 236 (358)
T ss_pred CEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHH
Confidence 99999999864433322222111111111101 01111111111 1122334444455667899999999999999
Q ss_pred HHHHHHHhhCCCCcEEEEeCCCCHHHHHH----HHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHH
Q 006476 315 EPMDFLQQAFPGVDIAIAHGQQYSRQLEE----TMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 390 (643)
Q Consensus 315 ~l~~~L~~~~p~~~v~~~hg~~~~~~r~~----v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr 390 (643)
.+++.|++..++..+..+||++++.+|++ +++.|++|+.+|||||+++++|+|+| +++||++..| +++|+||
T Consensus 237 ~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~---~~~~iqr 312 (358)
T TIGR01587 237 EFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP---IDSLIQR 312 (358)
T ss_pred HHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC---HHHHHHH
Confidence 99999998866667999999999999876 48999999999999999999999997 8899987655 6899999
Q ss_pred HhccCCCCCc----eEEEEEecCC
Q 006476 391 RGRVGRADKE----AHAYLFYPDK 410 (643)
Q Consensus 391 ~GR~GR~g~~----g~a~~l~~~~ 410 (643)
+||+||.|+. |.+|++....
T Consensus 313 ~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 313 LGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred hccccCCCCCCCCCCeEEEEeecC
Confidence 9999998743 4788877644
No 64
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-35 Score=310.86 Aligned_cols=379 Identities=18% Similarity=0.195 Sum_probs=298.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHH--HHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCV--VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 188 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~--~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~ 188 (643)
..-++|.|.||||||++.-..+..+ ...|+.+-+..|+|+.|..++.++.+.++.-.|..|++..+|.++.+
T Consensus 280 ~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTS------ 353 (902)
T KOG0923|consen 280 HQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTS------ 353 (902)
T ss_pred CcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEeccccC------
Confidence 4678999999999999976665554 23356699999999999999999999998877889999999888766
Q ss_pred HHhcCCceEEEechHhhhc----ccccCccceEEeecccc------cchhHHHHHHhcCCCceEEEeccCCChHhHHHHH
Q 006476 189 MIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQR------FGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 258 (643)
Q Consensus 189 ~l~~g~~dIiI~T~~~L~~----~~~~~~l~llViDEah~------~g~~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~ 258 (643)
.+.-|-+.|.++|.+ ...+..+++|||||||+ +.+.....+.+++++.++|..|||..... +.
T Consensus 354 ----ekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~DAek---FS 426 (902)
T KOG0923|consen 354 ----EKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATMDAEK---FS 426 (902)
T ss_pred ----cceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccccCHHH---HH
Confidence 335577888888764 45678999999999997 23344667788899999999999995553 45
Q ss_pred hcCCCcceeeCCCCCccceeEEEccCCHHHHHHHHHHHH------hcCCeEEEEecCccChHHHHHHHHhhC-------C
Q 006476 259 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYEL------DRGGQVFYVLPRIKGLEEPMDFLQQAF-------P 325 (643)
Q Consensus 259 ~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~i~~~l------~~~~qvlvf~~~~~~~e~l~~~L~~~~-------p 325 (643)
.++.+.+++.. |..|+||..++....+...+++....+ ...|.++||....++++.+.+.|+++. +
T Consensus 427 ~fFDdapIF~i-PGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~ 505 (902)
T KOG0923|consen 427 AFFDDAPIFRI-PGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIR 505 (902)
T ss_pred HhccCCcEEec-cCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccc
Confidence 55667766655 678999999998888777777665544 346999999999998888887776543 4
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCC-----------------CCHHHHH
Q 006476 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ-----------------FGLAQLY 388 (643)
Q Consensus 326 ~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~-----------------~s~~~~~ 388 (643)
++-+.++|+.++.+.+.++++.-..|..+|++||+|+++.+.|+++++||+-++.. .|-++..
T Consensus 506 eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~ 585 (902)
T KOG0923|consen 506 ELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASAN 585 (902)
T ss_pred eEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhh
Confidence 56789999999999999999999999999999999999999999999999755321 1346778
Q ss_pred HHHhccCCCCCceEEEEEecCCCCCcHHHHHHHHHHHHHhhcccchhhhhhhcccccCCCccCccccCCccchhhhhHHH
Q 006476 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFE 468 (643)
Q Consensus 389 Qr~GR~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~~~~~~~~~~ 468 (643)
||.||+||.| +|.||.+|+......+......+.|++.+. ++..+.++.|. .-+++.+...+.+....+-...+
T Consensus 586 QRaGRAGRtg-PGKCfRLYt~~aY~~eLE~~t~PEIqRtnL--~nvVL~LkSLG---I~Dl~~FdFmDpPp~etL~~aLE 659 (902)
T KOG0923|consen 586 QRAGRAGRTG-PGKCFRLYTAWAYEHELEEMTVPEIQRTNL--GNVVLLLKSLG---IHDLIHFDFLDPPPTETLLKALE 659 (902)
T ss_pred hhccccCCCC-CCceEEeechhhhhhhhccCCCcceeeccc--hhHHHHHHhcC---cchhcccccCCCCChHHHHHHHH
Confidence 9999999997 799999999776655555555566766654 57788888884 45777777766665544444445
Q ss_pred HHHHHHhhhcCccccccCCcceeEeeccCCCCCccccCCCCCc
Q 006476 469 MLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENP 511 (643)
Q Consensus 469 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 511 (643)
.|. ||.+++... ..|.+|..|+++|+||.+++.++.+..-+
T Consensus 660 ~Ly-aLGALn~~G-eLTk~GrrMaEfP~dPmlsKmi~as~ky~ 700 (902)
T KOG0923|consen 660 QLY-ALGALNHLG-ELTKLGRRMAEFPVDPMLSKMIVASEKYK 700 (902)
T ss_pred HHH-Hhhcccccc-chhhhhhhhhhcCCCHHHHhHHhhhcccc
Confidence 554 677776433 35678999999999999999999886654
No 65
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.1e-34 Score=341.21 Aligned_cols=374 Identities=16% Similarity=0.221 Sum_probs=246.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCC--CeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 188 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g--~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~ 188 (643)
+..++++|+||||||++.-..++. ...+ ..+++..|++..|...+.++.+.++...|-.|++-.++.+..
T Consensus 89 ~~VviI~GeTGSGKTTqlPq~lle-~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vrf~~~~------- 160 (1294)
T PRK11131 89 HQVVIVAGETGSGKTTQLPKICLE-LGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQV------- 160 (1294)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH-cCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeecCcccc-------
Confidence 457889999999999963222222 2233 356667897655555555555554432245566655543322
Q ss_pred HHhcCCceEEEechHhhhc----ccccCccceEEeecccc-c---ch--hHHHHHHhcCCCceEEEeccCCChHhHHHHH
Q 006476 189 MIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQR-F---GV--KQKEKIASFKISVDVLTLSATPIPRTLYLAL 258 (643)
Q Consensus 189 ~l~~g~~dIiI~T~~~L~~----~~~~~~l~llViDEah~-~---g~--~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~ 258 (643)
+..++|+|+||++|.+ +..++++++|||||||+ . ++ .....+...+++.++|+||||+.+..+ .
T Consensus 161 ---s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATid~e~f---s 234 (1294)
T PRK11131 161 ---SDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERF---S 234 (1294)
T ss_pred ---CCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCCCCHHHH---H
Confidence 1348999999998875 33478999999999995 2 11 112222223467899999999976533 3
Q ss_pred hcCCCcceeeCCCCCccceeEEEccCCH------HHHHHHHHHH---H--hcCCeEEEEecCccChHHHHHHHHhh-CCC
Q 006476 259 TGFRDASLISTPPPERLPIKTHLSAFSK------EKVISAIKYE---L--DRGGQVFYVLPRIKGLEEPMDFLQQA-FPG 326 (643)
Q Consensus 259 ~~~~~~~~i~~~~~~~~~v~~~~~~~~~------~~~~~~i~~~---l--~~~~qvlvf~~~~~~~e~l~~~L~~~-~p~ 326 (643)
..+.+..++.++ ...+|+..++..... ......+... + ...|+++||+|+..+++.+++.|... ++.
T Consensus 235 ~~F~~apvI~V~-Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~ 313 (1294)
T PRK11131 235 RHFNNAPIIEVS-GRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRH 313 (1294)
T ss_pred HHcCCCCEEEEc-CccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCc
Confidence 334445556554 334566665544321 1122222221 1 24589999999999999999999875 234
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecC---------------C--CCCHHHHHH
Q 006476 327 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV---------------Q--QFGLAQLYQ 389 (643)
Q Consensus 327 ~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~---------------p--~~s~~~~~Q 389 (643)
..|..+||+|++.+|..+++. .|..+||||||++++|||||++++||+++. | ..|.++|.|
T Consensus 314 ~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~Q 391 (1294)
T PRK11131 314 TEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQ 391 (1294)
T ss_pred ceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhh
Confidence 568899999999999999986 478999999999999999999999999763 1 125578999
Q ss_pred HHhccCCCCCceEEEEEecCCCCCcHHHHHHHHHHHHHhhcccchhhhhhhcccccCCCccCccccCCccchhhhhHHHH
Q 006476 390 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEM 469 (643)
Q Consensus 390 r~GR~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~~~~~~~~~~~ 469 (643)
|+|||||. .+|.||.+|++++.... .....+.|.+.+. ++..+.++.+ |.+++........++...+..-.+.
T Consensus 392 RaGRAGR~-~~G~c~rLyte~d~~~~-~~~~~PEIlR~~L--~~viL~lk~l---gl~di~~F~fldpP~~~~i~~al~~ 464 (1294)
T PRK11131 392 RKGRCGRV-SEGICIRLYSEDDFLSR-PEFTDPEILRTNL--ASVILQMTAL---GLGDIAAFPFVEAPDKRNIQDGVRL 464 (1294)
T ss_pred hccccCCC-CCcEEEEeCCHHHHHhh-hcccCCccccCCH--HHHHHHHHHc---CCCCcceeeCCCCCCHHHHHHHHHH
Confidence 99999999 68999999987654221 1111122322221 2344444444 5566665555555544444444555
Q ss_pred HHHHHhhhcCc----cccccCCcceeEeeccCCCCCccccCCCC
Q 006476 470 LFESLSKVDEH----CVISVPYKSVQIDININPRLPSEYINHLE 509 (643)
Q Consensus 470 l~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 509 (643)
|. .+.+++.+ ....|++|..++.+|+||.+++.++.+..
T Consensus 465 L~-~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~ 507 (1294)
T PRK11131 465 LE-ELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQK 507 (1294)
T ss_pred HH-HCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhh
Confidence 54 35555432 23467899999999999999998887644
No 66
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.3e-33 Score=336.78 Aligned_cols=300 Identities=22% Similarity=0.250 Sum_probs=218.0
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~ 157 (643)
+.+-|.+.+.+.|||+|.++++.++. ++|++++||||+|||..++.++.....++++++||+||++|+.|+++
T Consensus 69 ~~~~f~~~~G~~pt~iQ~~~i~~il~-------g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~ 141 (1176)
T PRK09401 69 FEKFFKKKTGSKPWSLQRTWAKRLLL-------GESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVE 141 (1176)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHC-------CCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHH
Confidence 45567778888999999999999875 68999999999999976555554445568999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCC--hHHHHHHHHHHhcCCceEEEechHhhhcc---cccCccceEEeecccccc------
Q 006476 158 VVSERFSKYPDIKVGLLSRFQS--KAEKEEHLDMIKHGHLNIIVGTHSLLGSR---VVYNNLGLLVVDEEQRFG------ 226 (643)
Q Consensus 158 ~~~~~~~~~~~i~v~~l~g~~~--~~~~~~~~~~l~~g~~dIiI~T~~~L~~~---~~~~~l~llViDEah~~g------ 226 (643)
.+++.. ...++.+..+.++.+ ..++.+....+..|.++|+|+||++|.+. +...+++++||||||++.
T Consensus 142 ~l~~l~-~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 142 KLEKFG-EKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHHHHh-hhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccch
Confidence 999744 444677777776543 45566677788888899999999999864 334569999999999853
Q ss_pred --------hh--HH-HHHHhcC------------------------CCceEEEeccCCChHhHHHHHhcCCCcceeeCC-
Q 006476 227 --------VK--QK-EKIASFK------------------------ISVDVLTLSATPIPRTLYLALTGFRDASLISTP- 270 (643)
Q Consensus 227 --------~~--~~-~~l~~~~------------------------~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~- 270 (643)
+. .. ..+..++ ...|++++|||.+|+...... ++++..+...
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l--~~~ll~~~v~~ 298 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKL--FRELLGFEVGS 298 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHH--hhccceEEecC
Confidence 31 11 1111111 167899999999886543211 1111111111
Q ss_pred -CCCccceeEEEccC-CH-HHHHHHHHHHHhcCCeEEEEecCccC---hHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHH
Q 006476 271 -PPERLPIKTHLSAF-SK-EKVISAIKYELDRGGQVFYVLPRIKG---LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEET 344 (643)
Q Consensus 271 -~~~~~~v~~~~~~~-~~-~~~~~~i~~~l~~~~qvlvf~~~~~~---~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v 344 (643)
......+...+... +. ..+...+ ..+ +.+++||||+... ++.+++.|+.. |+++..+||+| ++.
T Consensus 299 ~~~~~rnI~~~yi~~~~k~~~L~~ll-~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~--gi~v~~~hg~l-----~~~ 368 (1176)
T PRK09401 299 PVFYLRNIVDSYIVDEDSVEKLVELV-KRL--GDGGLIFVPSDKGKEYAEELAEYLEDL--GINAELAISGF-----ERK 368 (1176)
T ss_pred cccccCCceEEEEEcccHHHHHHHHH-Hhc--CCCEEEEEecccChHHHHHHHHHHHHC--CCcEEEEeCcH-----HHH
Confidence 11112233322222 22 2222222 222 4689999999888 99999999998 89999999999 334
Q ss_pred HHHHhcCCceEEEe----cccccccccccC-CCEEEEecCCCC--C---HHHHHHHHhccCCC
Q 006476 345 MEKFAQGAIKILIC----TNIVESGLDIQN-ANTIIVQDVQQF--G---LAQLYQLRGRVGRA 397 (643)
Q Consensus 345 ~~~F~~g~~~ILVa----T~i~~~GiDip~-v~~VI~~d~p~~--s---~~~~~Qr~GR~GR~ 397 (643)
+++|++|+++|||| |++++||||+|+ +++||++|.|.+ + ...+.||.||+-..
T Consensus 369 l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 369 FEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred HHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 69999999999999 699999999999 899999999973 2 24688999999743
No 67
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-34 Score=310.54 Aligned_cols=377 Identities=17% Similarity=0.242 Sum_probs=289.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHH-HHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 189 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~-~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~ 189 (643)
..-++|.|+||||||++.-..+.++ ....+.+.+..|+|..|..+++++.+.++...|-.|++..+|.+..+
T Consensus 66 nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts------- 138 (674)
T KOG0922|consen 66 NQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTS------- 138 (674)
T ss_pred CCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccCC-------
Confidence 4678999999999999976666554 22334599999999999999999999988877899999999877655
Q ss_pred HhcCCceEEEechHhhhc----ccccCccceEEeeccccc------chhHHHHHHhcCCCceEEEeccCCChHhHHHHHh
Q 006476 190 IKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRF------GVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 259 (643)
Q Consensus 190 l~~g~~dIiI~T~~~L~~----~~~~~~l~llViDEah~~------g~~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~ 259 (643)
++..|.+.|.++|++ +..++.+++||+||||+= .....+++.+.+++.++|.+|||...... ..
T Consensus 139 ---~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATlda~kf---S~ 212 (674)
T KOG0922|consen 139 ---KDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEKF---SE 212 (674)
T ss_pred ---CceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHH---HH
Confidence 457899999999875 445899999999999972 22224555666788999999999965543 44
Q ss_pred cCCCcceeeCCCCCccceeEEEccCCHHHHHHHHHHHH------hcCCeEEEEecCccChHHHHHHHHhhCCCC------
Q 006476 260 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYEL------DRGGQVFYVLPRIKGLEEPMDFLQQAFPGV------ 327 (643)
Q Consensus 260 ~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~i~~~l------~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~------ 327 (643)
++....++.+ |...+|+...+.........++..... ...|.++||.+..++++.+++.|.+.....
T Consensus 213 yF~~a~i~~i-~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~ 291 (674)
T KOG0922|consen 213 YFNNAPILTI-PGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPE 291 (674)
T ss_pred HhcCCceEee-cCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcc
Confidence 4455555554 467789988877765544444333221 345899999999999999999998764221
Q ss_pred cEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCC-----------------CCCHHHHHHH
Q 006476 328 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ-----------------QFGLAQLYQL 390 (643)
Q Consensus 328 ~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p-----------------~~s~~~~~Qr 390 (643)
-+.++||.|+.+++.+++..-..|..+|++||+++++.+.||++.+||+-+.- +.|.++-.||
T Consensus 292 ~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QR 371 (674)
T KOG0922|consen 292 LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQR 371 (674)
T ss_pred eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhh
Confidence 36789999999999999999889999999999999999999999999974421 1256788999
Q ss_pred HhccCCCCCceEEEEEecCCCCCcHHHHHHHHHHHHHhhcccchhhhhhhcccccCCCccCccccCCccchhhhhHHHHH
Q 006476 391 RGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML 470 (643)
Q Consensus 391 ~GR~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~~~~~~~~~~~l 470 (643)
.|||||.+ +|.||.+|+.+++ ........+.|++.+. +...+.++-+ |.+|++.+.....+.........+.|
T Consensus 372 aGRAGRt~-pGkcyRLYte~~~-~~~~~~~~PEI~R~~L--s~~vL~Lkal---gi~d~l~F~f~d~P~~~~l~~AL~~L 444 (674)
T KOG0922|consen 372 AGRAGRTG-PGKCYRLYTESAY-DKMPLQTVPEIQRVNL--SSAVLQLKAL---GINDPLRFPFIDPPPPEALEEALEEL 444 (674)
T ss_pred cccCCCCC-CceEEEeeeHHHH-hhcccCCCCceeeech--HHHHHHHHhc---CCCCcccCCCCCCCChHHHHHHHHHH
Confidence 99999996 7999999998876 4445555555655443 3444555555 78899999988888776665555555
Q ss_pred HHHHhhhcCccccccCCcceeEeeccCCCCCccccCCCC
Q 006476 471 FESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509 (643)
Q Consensus 471 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 509 (643)
. .+.++++...+..++|..++++|++|.+++..+.+.+
T Consensus 445 ~-~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~ 482 (674)
T KOG0922|consen 445 Y-SLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSE 482 (674)
T ss_pred H-hcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccc
Confidence 4 4666766555555589999999999999998887643
No 68
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.7e-34 Score=302.65 Aligned_cols=321 Identities=22% Similarity=0.266 Sum_probs=239.9
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEeccHHHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHF 156 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~Pt~~La~Q~~ 156 (643)
+..-++..+..+++|.|..|++.= +.+ |.|.+++++|+||||++.-++-+..+ ..|++.++|||..+||+|.|
T Consensus 205 fk~~lk~~G~~eLlPVQ~laVe~G---LLe---G~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy 278 (830)
T COG1202 205 FKRMLKREGIEELLPVQVLAVEAG---LLE---GENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKY 278 (830)
T ss_pred HHHHHHhcCcceecchhhhhhhhc---ccc---CCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchH
Confidence 556677778889999999997653 333 78999999999999999987766554 45899999999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHh----hhcccccCccceEEeecccccch-----
Q 006476 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL----LGSRVVYNNLGLLVVDEEQRFGV----- 227 (643)
Q Consensus 157 ~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~----L~~~~~~~~l~llViDEah~~g~----- 227 (643)
+.|++++++. ++++.+-.|..-...+.+....-..-++||||||++- |.....+.+++.|||||.|.+..
T Consensus 279 ~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~ 357 (830)
T COG1202 279 EDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGP 357 (830)
T ss_pred HHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhccc
Confidence 9999999887 7888777663322222111111122358999999873 33345689999999999998632
Q ss_pred h---HHHHHHhcCCCceEEEeccCCCh-HhHHHHHhcCCCcceeeCCCCCccceeEEEccCC-H----HHHHHHHHHHHh
Q 006476 228 K---QKEKIASFKISVDVLTLSATPIP-RTLYLALTGFRDASLISTPPPERLPIKTHLSAFS-K----EKVISAIKYELD 298 (643)
Q Consensus 228 ~---~~~~l~~~~~~~~vl~lSATp~~-~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~-~----~~~~~~i~~~l~ 298 (643)
. ...+++.+.++.|.|++|||... ..+... . +..++.- .....|+..++.-.. . +.+...+.++..
T Consensus 358 RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~-l---~a~lV~y-~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~ 432 (830)
T COG1202 358 RLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKK-L---GAKLVLY-DERPVPLERHLVFARNESEKWDIIARLVKREFS 432 (830)
T ss_pred chhhHHHHHHHhCCCCeEEEEEeecCChHHHHHH-h---CCeeEee-cCCCCChhHeeeeecCchHHHHHHHHHHHHHHh
Confidence 2 24567777889999999999743 333221 1 2222221 112233333332221 1 223333333332
Q ss_pred ----c--CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCC
Q 006476 299 ----R--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 372 (643)
Q Consensus 299 ----~--~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~ 372 (643)
. .||++||.+++..|..+++.|... |+++.++|++|+..+|..+...|.++++.++|+|..++.|+|+| ++
T Consensus 433 ~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k--G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFP-AS 509 (830)
T COG1202 433 TESSKGYRGQTIVFTYSRRRCHELADALTGK--GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFP-AS 509 (830)
T ss_pred hhhccCcCCceEEEecchhhHHHHHHHhhcC--CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCc-hH
Confidence 2 389999999999999999999988 99999999999999999999999999999999999999999999 77
Q ss_pred EEEE----ecCCCCCHHHHHHHHhccCCCC--CceEEEEEecCCCCC
Q 006476 373 TIIV----QDVQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKSLL 413 (643)
Q Consensus 373 ~VI~----~d~p~~s~~~~~Qr~GR~GR~g--~~g~a~~l~~~~~~~ 413 (643)
.||. .+..+.++.+|.||.||+||.+ ..|.+|+++.+....
T Consensus 510 QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y 556 (830)
T COG1202 510 QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKY 556 (830)
T ss_pred HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhh
Confidence 7774 4566778999999999999995 569999999886543
No 69
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.8e-34 Score=337.89 Aligned_cols=375 Identities=15% Similarity=0.215 Sum_probs=259.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 189 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~ 189 (643)
...++|+|+||||||+..-..++..- .....+++..|+|..|..++.++.+.++.-.|-.|++-.++.+..+
T Consensus 82 ~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~~~s------- 154 (1283)
T TIGR01967 82 NQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHDQVS------- 154 (1283)
T ss_pred CceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCcccC-------
Confidence 45789999999999997544333321 1124677889999999999999998887655667777666554432
Q ss_pred HhcCCceEEEechHhhhc----ccccCccceEEeeccccc------chhHHHHHHhcCCCceEEEeccCCChHhHHHHHh
Q 006476 190 IKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRF------GVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 259 (643)
Q Consensus 190 l~~g~~dIiI~T~~~L~~----~~~~~~l~llViDEah~~------g~~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~ 259 (643)
.+..|.++|++.|.+ +..++++++|||||+|+- .......+...+++.++|+||||+....+ ..
T Consensus 155 ---~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld~~~f---a~ 228 (1283)
T TIGR01967 155 ---SNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATIDPERF---SR 228 (1283)
T ss_pred ---CCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcCHHHH---HH
Confidence 347899999998864 345789999999999952 11212333344578999999999975433 33
Q ss_pred cCCCcceeeCCCCCccceeEEEccCCH----------HHHHHHHHHHHh-cCCeEEEEecCccChHHHHHHHHhhC-CCC
Q 006476 260 GFRDASLISTPPPERLPIKTHLSAFSK----------EKVISAIKYELD-RGGQVFYVLPRIKGLEEPMDFLQQAF-PGV 327 (643)
Q Consensus 260 ~~~~~~~i~~~~~~~~~v~~~~~~~~~----------~~~~~~i~~~l~-~~~qvlvf~~~~~~~e~l~~~L~~~~-p~~ 327 (643)
.+.+..++..+ ...+|+..++..... ..+...+...+. ..|+++||+|+..+++.+++.|.... ++.
T Consensus 229 ~F~~apvI~V~-Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~ 307 (1283)
T TIGR01967 229 HFNNAPIIEVS-GRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHT 307 (1283)
T ss_pred HhcCCCEEEEC-CCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCc
Confidence 34445555543 344666665543211 112333333222 45899999999999999999998753 457
Q ss_pred cEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCC-----------------CCHHHHHHH
Q 006476 328 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ-----------------FGLAQLYQL 390 (643)
Q Consensus 328 ~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~-----------------~s~~~~~Qr 390 (643)
.+..+||+|++++|++++..+ +..+|||||+++++|||||++++||+++.++ .|.+++.||
T Consensus 308 ~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QR 385 (1283)
T TIGR01967 308 EILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQR 385 (1283)
T ss_pred EEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHH
Confidence 799999999999999997654 3479999999999999999999999987432 256799999
Q ss_pred HhccCCCCCceEEEEEecCCCCCcHHHHHHHHHHHHHhhcccchhhhhhhcccccCCCccCccccCCccchhhhhHHHHH
Q 006476 391 RGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML 470 (643)
Q Consensus 391 ~GR~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~~~~~~~~~~~l 470 (643)
.||+||.+ .|.||.+|++++.... .....+.|.+.+. +++.+.++-+ |.+++........+....+..-.+.|
T Consensus 386 aGRAGR~~-~G~cyRLyte~~~~~~-~~~~~PEIlR~~L--~~viL~l~~l---g~~di~~f~fldpP~~~~i~~A~~~L 458 (1283)
T TIGR01967 386 KGRCGRVA-PGICIRLYSEEDFNSR-PEFTDPEILRTNL--ASVILQMLAL---RLGDIAAFPFIEAPDPRAIRDGFRLL 458 (1283)
T ss_pred hhhhCCCC-CceEEEecCHHHHHhh-hhccCcccccccH--HHHHHHHHhc---CCCCcccccCCCCCCHHHHHHHHHHH
Confidence 99999997 8999999987654221 1111223333222 2344444443 55666555555555554555555555
Q ss_pred HHHHhhhcCcc--ccccCCcceeEeeccCCCCCccccCCCC
Q 006476 471 FESLSKVDEHC--VISVPYKSVQIDININPRLPSEYINHLE 509 (643)
Q Consensus 471 ~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 509 (643)
. .+.+++.+. ...|++|..++.+|+||.+++.++.+..
T Consensus 459 ~-~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~ 498 (1283)
T TIGR01967 459 E-ELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHR 498 (1283)
T ss_pred H-HCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhh
Confidence 4 356665443 2357899999999999999998887643
No 70
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=4.2e-33 Score=338.67 Aligned_cols=312 Identities=20% Similarity=0.207 Sum_probs=229.8
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~ 157 (643)
+.+-|++.++|+|||+|.++++.+++ ++|++++||||+|||+.++.+++....+|++++|++||++|+.|+++
T Consensus 68 ~~~~f~~~~G~~pt~iQ~~~i~~il~-------G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~ 140 (1638)
T PRK14701 68 FEEFFEKITGFEFWSIQKTWAKRILR-------GKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVE 140 (1638)
T ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHc-------CCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHH
Confidence 45566666788999999999999986 58999999999999997666666555678899999999999999999
Q ss_pred HHHHHhcCC-CCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccc---cCccceEEeeccccc--------
Q 006476 158 VVSERFSKY-PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV---YNNLGLLVVDEEQRF-------- 225 (643)
Q Consensus 158 ~~~~~~~~~-~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~---~~~l~llViDEah~~-------- 225 (643)
.++...... .++++..++|+.+..++...++.+.+|+++|+|+||++|.+.+. ..+++++||||||++
T Consensus 141 ~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 141 KIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccc
Confidence 998754432 24778889999888888888889999999999999998875422 267899999999986
Q ss_pred ------chhH--HH----HHH----------------------hcCCCce-EEEeccCCChHhHHHHHhcCCCcceeeCC
Q 006476 226 ------GVKQ--KE----KIA----------------------SFKISVD-VLTLSATPIPRTLYLALTGFRDASLISTP 270 (643)
Q Consensus 226 ------g~~~--~~----~l~----------------------~~~~~~~-vl~lSATp~~~~~~~~~~~~~~~~~i~~~ 270 (643)
|+.. .+ .++ .++...+ .+++|||..++..... .++++..+...
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~--l~~~~l~f~v~ 298 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVK--LYRELLGFEVG 298 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHH--HhhcCeEEEec
Confidence 3311 11 111 1223444 5779999987533221 12333333332
Q ss_pred CCC--ccceeEEEccCCHHHHHHHHHHHHh-cCCeEEEEecCccCh---HHHHHHHHhhCCCCcEEEEeCCCCHHHHHHH
Q 006476 271 PPE--RLPIKTHLSAFSKEKVISAIKYELD-RGGQVFYVLPRIKGL---EEPMDFLQQAFPGVDIAIAHGQQYSRQLEET 344 (643)
Q Consensus 271 ~~~--~~~v~~~~~~~~~~~~~~~i~~~l~-~~~qvlvf~~~~~~~---e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v 344 (643)
... ...+...+...+.... ..+...+. .+.+.+|||++.+.+ +.+++.|... |+++..+||+ |..+
T Consensus 299 ~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~--Gi~a~~~h~~-----R~~~ 370 (1638)
T PRK14701 299 SGRSALRNIVDVYLNPEKIIK-EHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLED--GFKIELVSAK-----NKKG 370 (1638)
T ss_pred CCCCCCCCcEEEEEECCHHHH-HHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHC--CCeEEEecch-----HHHH
Confidence 211 1122222221222211 22222222 256889999998764 8999999998 9999999995 8899
Q ss_pred HHHHhcCCceEEEec----ccccccccccC-CCEEEEecCCC--CCHHHHHHHH-------------hccCCCCCceEEE
Q 006476 345 MEKFAQGAIKILICT----NIVESGLDIQN-ANTIIVQDVQQ--FGLAQLYQLR-------------GRVGRADKEAHAY 404 (643)
Q Consensus 345 ~~~F~~g~~~ILVaT----~i~~~GiDip~-v~~VI~~d~p~--~s~~~~~Qr~-------------GR~GR~g~~g~a~ 404 (643)
+++|++|+++||||| ++++||||+|+ |++||++|.|. |++..|+|-. ||+||.|..+.++
T Consensus 371 l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~ 450 (1638)
T PRK14701 371 FDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGV 450 (1638)
T ss_pred HHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhH
Confidence 999999999999999 59999999999 99999999997 5666566554 9999999888887
Q ss_pred EE
Q 006476 405 LF 406 (643)
Q Consensus 405 ~l 406 (643)
..
T Consensus 451 ~~ 452 (1638)
T PRK14701 451 LD 452 (1638)
T ss_pred HH
Confidence 43
No 71
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.6e-32 Score=302.44 Aligned_cols=309 Identities=18% Similarity=0.132 Sum_probs=221.7
Q ss_pred HHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHH
Q 006476 81 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 160 (643)
Q Consensus 81 ~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~ 160 (643)
.-.......|+|+|..+++.++. |+ |+.+.||+|||++|.+|++.....|++|+|++||++||.|.++.+.
T Consensus 95 a~~R~lg~~p~~VQ~~~~~~ll~-------G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~ 165 (656)
T PRK12898 95 ASGRVLGQRHFDVQLMGGLALLS-------GR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMR 165 (656)
T ss_pred HHHHHhCCCCChHHHHHHHHHhC-------CC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHH
Confidence 34456778999999999999874 33 9999999999999999999998899999999999999999999999
Q ss_pred HHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhh-----hcccc-------------------------
Q 006476 161 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRVV------------------------- 210 (643)
Q Consensus 161 ~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L-----~~~~~------------------------- 210 (643)
..+.. .|++++.++|+.+...++.. . .+||+|||..-+ .+.+.
T Consensus 166 ~l~~~-lGlsv~~i~gg~~~~~r~~~-----y-~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (656)
T PRK12898 166 PLYEA-LGLTVGCVVEDQSPDERRAA-----Y-GADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQL 238 (656)
T ss_pred HHHhh-cCCEEEEEeCCCCHHHHHHH-----c-CCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhh
Confidence 86554 48999999998765443322 2 389999998644 22221
Q ss_pred -cCccceEEeeccccc------------c---hh----H----HHHHHhcCC----------------------------
Q 006476 211 -YNNLGLLVVDEEQRF------------G---VK----Q----KEKIASFKI---------------------------- 238 (643)
Q Consensus 211 -~~~l~llViDEah~~------------g---~~----~----~~~l~~~~~---------------------------- 238 (643)
.+.+.+.||||+|.+ | .. . ....+.+..
T Consensus 239 v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~ 318 (656)
T PRK12898 239 LLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAE 318 (656)
T ss_pred cccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhC
Confidence 245788999999841 0 00 0 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 006476 239 -------------------------------------------------------------------------------- 238 (643)
Q Consensus 239 -------------------------------------------------------------------------------- 238 (643)
T Consensus 319 ~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~ 398 (656)
T PRK12898 319 SLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLAR 398 (656)
T ss_pred cchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeee
Confidence
Q ss_pred ---------CceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCc-cceeEEEccCCHHHHHHHHHHHH----hcCCeEE
Q 006476 239 ---------SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER-LPIKTHLSAFSKEKVISAIKYEL----DRGGQVF 304 (643)
Q Consensus 239 ---------~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~-~~v~~~~~~~~~~~~~~~i~~~l----~~~~qvl 304 (643)
-.++.+||||.......+...+..++..|.+..+.. .....++.. +......++...+ ..+.+++
T Consensus 399 It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~-t~~~K~~aL~~~i~~~~~~~~pvL 477 (656)
T PRK12898 399 ITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFL-TAAAKWAAVAARVRELHAQGRPVL 477 (656)
T ss_pred ehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEe-CHHHHHHHHHHHHHHHHhcCCCEE
Confidence 023455667765444333333333443333322221 111112222 2223333444433 3367899
Q ss_pred EEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccccccccc---CCC-----EEEE
Q 006476 305 YVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ---NAN-----TIIV 376 (643)
Q Consensus 305 vf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip---~v~-----~VI~ 376 (643)
|||++++.++.++..|... ++++..+||+++ +++..+..|..+...|+|||++++||+||+ ++. +||+
T Consensus 478 Ift~t~~~se~L~~~L~~~--gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~ 553 (656)
T PRK12898 478 VGTRSVAASERLSALLREA--GLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVIL 553 (656)
T ss_pred EEeCcHHHHHHHHHHHHHC--CCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEE
Confidence 9999999999999999998 899999999865 555666667777778999999999999999 666 9999
Q ss_pred ecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 377 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 377 ~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
++.|. +...|.||+||+||.|.+|.|++|++.++
T Consensus 554 ~d~P~-s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 554 TERHD-SARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred cCCCC-CHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 99998 89999999999999999999999998654
No 72
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.2e-33 Score=311.30 Aligned_cols=316 Identities=18% Similarity=0.187 Sum_probs=221.3
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCC
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 166 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~ 166 (643)
.+.++|+|.+|+..+.. ..+....++++|||+|||++++.++... ++++|||||+.+|+.||.++|.+ |...
T Consensus 253 ~~~LRpYQ~eAl~~~~~----~gr~r~GIIvLPtGaGKTlvai~aa~~l---~k~tLILvps~~Lv~QW~~ef~~-~~~l 324 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVTAACTV---KKSCLVLCTSAVSVEQWKQQFKM-WSTI 324 (732)
T ss_pred CCCcCHHHHHHHHHHHh----cCCCCCcEEEeCCCCChHHHHHHHHHHh---CCCEEEEeCcHHHHHHHHHHHHH-hcCC
Confidence 46899999999988764 2223567999999999999998776544 57899999999999999999987 4444
Q ss_pred CCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-------------cccCccceEEeecccccchhHHHH-
Q 006476 167 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------------VVYNNLGLLVVDEEQRFGVKQKEK- 232 (643)
Q Consensus 167 ~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-------------~~~~~l~llViDEah~~g~~~~~~- 232 (643)
+...+..++|..... + .+..+|+|+|++.+... +.-..+++||+||||+++......
T Consensus 325 ~~~~I~~~tg~~k~~-----~----~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~i 395 (732)
T TIGR00603 325 DDSQICRFTSDAKER-----F----HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRRV 395 (732)
T ss_pred CCceEEEEecCcccc-----c----ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHHH
Confidence 446777777642111 0 13468999999987421 112478999999999997765543
Q ss_pred HHhcCCCceEEEeccCCChHhHHH-HHhcCCCcceeeCCC-----CCc-cceeE--EEccCCHH----------------
Q 006476 233 IASFKISVDVLTLSATPIPRTLYL-ALTGFRDASLISTPP-----PER-LPIKT--HLSAFSKE---------------- 287 (643)
Q Consensus 233 l~~~~~~~~vl~lSATp~~~~~~~-~~~~~~~~~~i~~~~-----~~~-~~v~~--~~~~~~~~---------------- 287 (643)
+..+ .....|+|||||....-.. .+..+..+.+...+. ... .++.. ...+...+
T Consensus 396 l~~l-~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l 474 (732)
T TIGR00603 396 LTIV-QAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLL 474 (732)
T ss_pred HHhc-CcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHH
Confidence 4444 4556899999996422111 111111222211100 000 01110 01111100
Q ss_pred -----HHHHH---HHHHH-hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcC-CceEEE
Q 006476 288 -----KVISA---IKYEL-DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIKILI 357 (643)
Q Consensus 288 -----~~~~~---i~~~l-~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g-~~~ILV 357 (643)
....+ +.+.. .++.++||||+++..++.++..|. +.++||++++.+|++++++|++| .+++||
T Consensus 475 ~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv 547 (732)
T TIGR00603 475 YVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-------KPFIYGPTSQQERMQILQNFQHNPKVNTIF 547 (732)
T ss_pred hhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-------CceEECCCCHHHHHHHHHHHHhCCCccEEE
Confidence 11122 22222 367899999999888877777662 45689999999999999999875 789999
Q ss_pred ecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEE-------EEEecCCCCCcHHHHHHHHHHHHH
Q 006476 358 CTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHA-------YLFYPDKSLLSDQALERLAALEEC 427 (643)
Q Consensus 358 aT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a-------~~l~~~~~~~~~~~~~rl~~i~~~ 427 (643)
+|+++.+|+|+|++++||+++.|.-|..+|.||+||++|.+..|.+ |.+++++......+.+|..-+.+.
T Consensus 548 ~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~q 624 (732)
T TIGR00603 548 LSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQ 624 (732)
T ss_pred EecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHC
Confidence 9999999999999999999998743899999999999999765554 889999988888888887766553
No 73
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.5e-32 Score=305.98 Aligned_cols=316 Identities=30% Similarity=0.379 Sum_probs=257.5
Q ss_pred CCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 86 ~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
-...+++.|..|++.+.... ......|+.|.||||||++|+.++...+..|+++|+|+|-..|..|+.++|+.+|+
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~---~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg- 270 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSL---GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG- 270 (730)
T ss_pred cccccCHHHHHHHHHHHHhc---ccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC-
Confidence 35689999999999998743 22467899999999999999999999999999999999999999999999999984
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHH----------HHHHh
Q 006476 166 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK----------EKIAS 235 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~----------~~l~~ 235 (643)
.++++++++.+..++.+.|.++.+|++.|||||-+.++ .+|+|+++|||||+|.-.+++. ..++.
T Consensus 271 ---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF--~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra 345 (730)
T COG1198 271 ---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF--LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRA 345 (730)
T ss_pred ---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc--CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHH
Confidence 68999999999999999999999999999999999886 6789999999999998654332 23444
Q ss_pred cCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCC-------CccceeEEEccC---CHHHHHHHHHHHHhcCCeEEE
Q 006476 236 FKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP-------ERLPIKTHLSAF---SKEKVISAIKYELDRGGQVFY 305 (643)
Q Consensus 236 ~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~-------~~~~v~~~~~~~---~~~~~~~~i~~~l~~~~qvlv 305 (643)
...+.++|+-||||.-+++..+..|-.....+..... ....+....... -...+.+++.+.+.++.|+++
T Consensus 346 ~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~ll 425 (730)
T COG1198 346 KKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLL 425 (730)
T ss_pred HHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEE
Confidence 4578999999999999999888776222211111111 011111111111 125688999999999999999
Q ss_pred EecC------------------------------------------------------------ccChHHHHHHHHhhCC
Q 006476 306 VLPR------------------------------------------------------------IKGLEEPMDFLQQAFP 325 (643)
Q Consensus 306 f~~~------------------------------------------------------------~~~~e~l~~~L~~~~p 325 (643)
|.|+ ...+|++.+.|+..||
T Consensus 426 flnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP 505 (730)
T COG1198 426 FLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFP 505 (730)
T ss_pred EEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCC
Confidence 9988 2468999999999999
Q ss_pred CCcEEEEeCCCCH--HHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCC------CC-----HHHHHHHHh
Q 006476 326 GVDIAIAHGQQYS--RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ------FG-----LAQLYQLRG 392 (643)
Q Consensus 326 ~~~v~~~hg~~~~--~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~------~s-----~~~~~Qr~G 392 (643)
++++..+.++.+. ...+..+..|.+|+.+|||.|++++.|.|+|+++.|.+.|++. |- ...+.|-.|
T Consensus 506 ~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaG 585 (730)
T COG1198 506 GARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAG 585 (730)
T ss_pred CCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHh
Confidence 9999999999765 4467889999999999999999999999999999999887663 11 245789999
Q ss_pred ccCCCCCceEEEE-EecCC
Q 006476 393 RVGRADKEAHAYL-FYPDK 410 (643)
Q Consensus 393 R~GR~g~~g~a~~-l~~~~ 410 (643)
|+||.+++|.+++ .+.|+
T Consensus 586 RAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 586 RAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred hhccCCCCCeEEEEeCCCC
Confidence 9999999999887 34444
No 74
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=5.7e-32 Score=303.02 Aligned_cols=312 Identities=18% Similarity=0.201 Sum_probs=226.9
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHH
Q 006476 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 159 (643)
Q Consensus 80 ~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~ 159 (643)
+.-.......|++.|..+...+.. ..++.++||+|||++|.+|++.....|++|.|++||++||.|+++.+
T Consensus 47 Ea~~R~lg~~p~~vQlig~~~l~~---------G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~ 117 (745)
T TIGR00963 47 EASKRVLGMRPFDVQLIGGIALHK---------GKIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWM 117 (745)
T ss_pred HHHHHHhCCCccchHHhhhhhhcC---------CceeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHH
Confidence 344556678999999999876632 34999999999999999999766667889999999999999999999
Q ss_pred HHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhh-h----c-------ccccCccceEEeecccccch
Q 006476 160 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-G----S-------RVVYNNLGLLVVDEEQRFGV 227 (643)
Q Consensus 160 ~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L-~----~-------~~~~~~l~llViDEah~~g~ 227 (643)
...+..+ |++++.+.|+.+..++...+ .+||+||||+.| . + .+.+++++++||||+|+++.
T Consensus 118 ~~l~~~L-GLsv~~i~g~~~~~~r~~~y------~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 118 GQVYRFL-GLSVGLILSGMSPEERREAY------ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred HHHhccC-CCeEEEEeCCCCHHHHHHhc------CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 9865544 89999999988766554433 379999999977 2 1 24568899999999998765
Q ss_pred -hHHHHHHhcC--CCceEEEeccCCChHhHHH------------------------------------------------
Q 006476 228 -KQKEKIASFK--ISVDVLTLSATPIPRTLYL------------------------------------------------ 256 (643)
Q Consensus 228 -~~~~~l~~~~--~~~~vl~lSATp~~~~~~~------------------------------------------------ 256 (643)
..+..+.... .....+.++|||+++++..
T Consensus 191 DeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al 270 (745)
T TIGR00963 191 DEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNAL 270 (745)
T ss_pred HhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHH
Confidence 3332221111 1222344444443322210
Q ss_pred --------------------------------------------------------------------------------
Q 006476 257 -------------------------------------------------------------------------------- 256 (643)
Q Consensus 257 -------------------------------------------------------------------------------- 256 (643)
T Consensus 271 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa 350 (745)
T TIGR00963 271 KAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTA 350 (745)
T ss_pred HHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCc
Confidence
Q ss_pred -----HHhcCCCcceeeCCCCC---ccceeEEEccCCHH---HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC
Q 006476 257 -----ALTGFRDASLISTPPPE---RLPIKTHLSAFSKE---KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325 (643)
Q Consensus 257 -----~~~~~~~~~~i~~~~~~---~~~v~~~~~~~~~~---~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p 325 (643)
.+....+..++.+|+.. +......+.....+ .+.+.+.+....+.++||||++++.++.+++.|.+.
T Consensus 351 ~te~~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~-- 428 (745)
T TIGR00963 351 KTEEEEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER-- 428 (745)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc--
Confidence 00000111111112111 01111111111111 233334444567889999999999999999999998
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccC-------CCEEEEecCCCCCHHHHHHHHhccCCCC
Q 006476 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN-------ANTIIVQDVQQFGLAQLYQLRGRVGRAD 398 (643)
Q Consensus 326 ~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~-------v~~VI~~d~p~~s~~~~~Qr~GR~GR~g 398 (643)
++++..+||+ +.+|+..+..|+.+...|+|||++++||+||+. ..+||+++.|. +...+.|++||+||.|
T Consensus 429 gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~-s~ri~~q~~GRtGRqG 505 (745)
T TIGR00963 429 GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHE-SRRIDNQLRGRSGRQG 505 (745)
T ss_pred CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCC-cHHHHHHHhccccCCC
Confidence 8999999999 789999999999999999999999999999998 55999999998 9999999999999999
Q ss_pred CceEEEEEecCCCC
Q 006476 399 KEAHAYLFYPDKSL 412 (643)
Q Consensus 399 ~~g~a~~l~~~~~~ 412 (643)
.+|.+.+|++.++.
T Consensus 506 ~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 506 DPGSSRFFLSLEDN 519 (745)
T ss_pred CCcceEEEEeccHH
Confidence 99999999987653
No 75
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=4.8e-31 Score=310.38 Aligned_cols=309 Identities=21% Similarity=0.303 Sum_probs=222.1
Q ss_pred CCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CCCeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 86 ~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
...+++++|.+++..++. .|.|+++|||+|||.+++.++...+. .+++++|++||++|+.|+.+.+++.++
T Consensus 12 ~~~~~r~yQ~~~~~~~l~--------~n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 12 NTIEARLYQQLLAATALK--------KNTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred CcCCccHHHHHHHHHHhc--------CCeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 456999999999887754 38999999999999999888776653 468999999999999999999987553
Q ss_pred CCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeecccccchh-----HHHHHH
Q 006476 165 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGVK-----QKEKIA 234 (643)
Q Consensus 165 ~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDEah~~g~~-----~~~~l~ 234 (643)
.++.++..++|..+..++...|. +.+|+|+||+.+.. .+.+.++++||+||||+.... ......
T Consensus 84 -~~~~~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~ 157 (773)
T PRK13766 84 -IPEEKIVVFTGEVSPEKRAELWE-----KAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH 157 (773)
T ss_pred -CCCceEEEEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHH
Confidence 33468888998877666555442 36899999987754 345688999999999996321 112223
Q ss_pred hcCCCceEEEeccCCChHhH--HHHHhcC--CCcc-------------------eeeC----------------------
Q 006476 235 SFKISVDVLTLSATPIPRTL--YLALTGF--RDAS-------------------LIST---------------------- 269 (643)
Q Consensus 235 ~~~~~~~vl~lSATp~~~~~--~~~~~~~--~~~~-------------------~i~~---------------------- 269 (643)
.......+++|||||..... ......+ .... .+..
T Consensus 158 ~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~ 237 (773)
T PRK13766 158 EDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLK 237 (773)
T ss_pred hcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHH
Confidence 33456679999999942211 0000000 0000 0000
Q ss_pred --------CCCCc-cc----------eeEEEc------------------------------------------------
Q 006476 270 --------PPPER-LP----------IKTHLS------------------------------------------------ 282 (643)
Q Consensus 270 --------~~~~~-~~----------v~~~~~------------------------------------------------ 282 (643)
.+... .. +...+.
T Consensus 238 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~ 317 (773)
T PRK13766 238 KLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSS 317 (773)
T ss_pred HHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhcccc
Confidence 00000 00 000000
Q ss_pred --------------------------c-CC-HHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEE
Q 006476 283 --------------------------A-FS-KEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 332 (643)
Q Consensus 283 --------------------------~-~~-~~~~~~~i~~~l--~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~ 332 (643)
. .. -..+.+.+...+ ..+++++|||++...++.+++.|... ++.+..+
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~--~~~~~~~ 395 (773)
T PRK13766 318 GGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE--GIKAVRF 395 (773)
T ss_pred CCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC--CCceEEE
Confidence 0 00 001111222222 35689999999999999999999776 7888899
Q ss_pred eCC--------CCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEE
Q 006476 333 HGQ--------QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY 404 (643)
Q Consensus 333 hg~--------~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~ 404 (643)
||+ |++.+|..++++|++|+.+|||||+++++|+|+|++++||+||++. +...|+||+||+||.+ .|.+|
T Consensus 396 ~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~-s~~r~iQR~GR~gR~~-~~~v~ 473 (773)
T PRK13766 396 VGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVP-SEIRSIQRKGRTGRQE-EGRVV 473 (773)
T ss_pred EccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCC-CHHHHHHHhcccCcCC-CCEEE
Confidence 886 9999999999999999999999999999999999999999999986 9999999999999986 48999
Q ss_pred EEecCCCC
Q 006476 405 LFYPDKSL 412 (643)
Q Consensus 405 ~l~~~~~~ 412 (643)
+++..+..
T Consensus 474 ~l~~~~t~ 481 (773)
T PRK13766 474 VLIAKGTR 481 (773)
T ss_pred EEEeCCCh
Confidence 99887654
No 76
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2e-32 Score=311.98 Aligned_cols=376 Identities=20% Similarity=0.266 Sum_probs=289.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 189 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~ 189 (643)
..-++|+|+||||||++.-..++..- ..++.+.++.|+|.-|..+++++.+.++..+|-.|++..++.+...
T Consensus 65 ~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s------- 137 (845)
T COG1643 65 NQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVS------- 137 (845)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCC-------
Confidence 46789999999999999877776664 3456899999999999999999999999888889999999876543
Q ss_pred HhcCCceEEEechHhhhc----ccccCccceEEeeccccc------chhH-HHHHHhcCCCceEEEeccCCChHhHHHHH
Q 006476 190 IKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRF------GVKQ-KEKIASFKISVDVLTLSATPIPRTLYLAL 258 (643)
Q Consensus 190 l~~g~~dIiI~T~~~L~~----~~~~~~l~llViDEah~~------g~~~-~~~l~~~~~~~~vl~lSATp~~~~~~~~~ 258 (643)
.+..|-+.|.+.|.+ +..++.+++|||||+|+= .... +..+...+++.++|.||||.....+ .
T Consensus 138 ---~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~rf---s 211 (845)
T COG1643 138 ---PRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERF---S 211 (845)
T ss_pred ---CCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHHHH---H
Confidence 457899999998764 455899999999999972 2222 2335556668999999999966654 4
Q ss_pred hcCCCcceeeCCCCCccceeEEEccCC-HHH-HHHHHHH----HHh-cCCeEEEEecCccChHHHHHHHHh-hC-CCCcE
Q 006476 259 TGFRDASLISTPPPERLPIKTHLSAFS-KEK-VISAIKY----ELD-RGGQVFYVLPRIKGLEEPMDFLQQ-AF-PGVDI 329 (643)
Q Consensus 259 ~~~~~~~~i~~~~~~~~~v~~~~~~~~-~~~-~~~~i~~----~l~-~~~qvlvf~~~~~~~e~l~~~L~~-~~-p~~~v 329 (643)
.++.+.+++.+ +...+||..++.... .+. +.+++.. .+. ..|.+|||.+...+++.+++.|.+ .+ +.+.|
T Consensus 212 ~~f~~apvi~i-~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i 290 (845)
T COG1643 212 AYFGNAPVIEI-EGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEI 290 (845)
T ss_pred HHcCCCCEEEe-cCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEE
Confidence 44566777765 456789998884322 222 4444433 332 349999999999999999999998 44 57899
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCC-----------------CCHHHHHHHHh
Q 006476 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ-----------------FGLAQLYQLRG 392 (643)
Q Consensus 330 ~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~-----------------~s~~~~~Qr~G 392 (643)
.++||.|+.+++.++++.-..|..+|++||+|+|++|.||++.+||+-+..+ .|-++..||.|
T Consensus 291 ~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaG 370 (845)
T COG1643 291 LPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAG 370 (845)
T ss_pred eeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhcc
Confidence 9999999999999999988888888999999999999999999999754321 14567889999
Q ss_pred ccCCCCCceEEEEEecCCCCCcHHHHHHHHHHHHHhhcccchhhhhhhcccccCC-CccCccccCCccchhhhhHHHHHH
Q 006476 393 RVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFG-TIFGEQQTGDVGNVGVDLFFEMLF 471 (643)
Q Consensus 393 R~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g-~~lg~~q~g~~~~~~~~~~~~~l~ 471 (643)
|+||.+ +|.||-+|+.+++. .......++|...+. ++..+.+..+ |.+ +.........+....+....++|.
T Consensus 371 RAGR~~-pGicyRLyse~~~~-~~~~~t~PEIlrtdL--s~~vL~l~~~---G~~~d~~~f~fld~P~~~~i~~A~~~L~ 443 (845)
T COG1643 371 RAGRTG-PGICYRLYSEEDFL-AFPEFTLPEILRTDL--SGLVLQLKSL---GIGQDIAPFPFLDPPPEAAIQAALTLLQ 443 (845)
T ss_pred ccccCC-CceEEEecCHHHHH-hcccCCChhhhhcch--HHHHHHHHhc---CCCCCcccCccCCCCChHHHHHHHHHHH
Confidence 999995 79999999986654 444444555655433 5666666555 665 777777777776666666666664
Q ss_pred HHHhhhcCccccccCCcceeEeeccCCCCCccccCCCC
Q 006476 472 ESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509 (643)
Q Consensus 472 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 509 (643)
.+.++++... .|+.|..++.+|+||.++.+.+.+..
T Consensus 444 -~LGAld~~g~-LT~lG~~ms~lpldprLA~mLl~a~~ 479 (845)
T COG1643 444 -ELGALDDSGK-LTPLGKQMSLLPLDPRLARMLLTAPE 479 (845)
T ss_pred -HcCCcCCCCC-CCHHHHHHHhCCCChHHHHHHHhccc
Confidence 5777776543 57899999999999999998887755
No 77
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2.1e-31 Score=318.36 Aligned_cols=286 Identities=23% Similarity=0.273 Sum_probs=207.0
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~ 157 (643)
+.+.|.+...+.|+|+|..+++.++. +.|++++||||+|||..++.++......+++++|++||++||.|+++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~-------G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLR-------GDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhC-------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHH
Confidence 55667777788999999999999875 68999999999999985444444444568899999999999999999
Q ss_pred HHHHHhcCCCCce---EEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccc-cC-ccceEEeecccccc------
Q 006476 158 VVSERFSKYPDIK---VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-YN-NLGLLVVDEEQRFG------ 226 (643)
Q Consensus 158 ~~~~~~~~~~~i~---v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~-~~-~l~llViDEah~~g------ 226 (643)
.+.+..... ++. ++.++|+.+..++...++.+.+|.++|+|+||++|.+.+. +. +++++|+||||++.
T Consensus 140 ~l~~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~iVvDEaD~~L~~~k~v 218 (1171)
T TIGR01054 140 KISSLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDFIFVDDVDALLKASKNV 218 (1171)
T ss_pred HHHHHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCEEEEeChHhhhhccccH
Confidence 998854432 444 3457888888887788888888889999999999976432 23 78999999999863
Q ss_pred --------hhH--HHH-----------------------HHhcCCCce--EEEeccCCChHhHHHHHhcCCCcceeeCCC
Q 006476 227 --------VKQ--KEK-----------------------IASFKISVD--VLTLSATPIPRTLYLALTGFRDASLISTPP 271 (643)
Q Consensus 227 --------~~~--~~~-----------------------l~~~~~~~~--vl~lSATp~~~~~~~~~~~~~~~~~i~~~~ 271 (643)
+.. .+. +...+...| ++++|||+.|+.....+ +++...+....
T Consensus 219 d~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l--~r~ll~~~v~~ 296 (1171)
T TIGR01054 219 DKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKL--FRELLGFEVGG 296 (1171)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHH--cccccceEecC
Confidence 211 111 112233344 56789996665433211 22222222211
Q ss_pred C--CccceeEEEccC-C-HHHHHHHHHHHHhcCCeEEEEecCc---cChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHH
Q 006476 272 P--ERLPIKTHLSAF-S-KEKVISAIKYELDRGGQVFYVLPRI---KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEET 344 (643)
Q Consensus 272 ~--~~~~v~~~~~~~-~-~~~~~~~i~~~l~~~~qvlvf~~~~---~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v 344 (643)
. ....+...+... . ...+.+.+ +. .+.+++|||++. +.++.+++.|+.. |+++..+||+|+ +.+
T Consensus 297 ~~~~~r~I~~~~~~~~~~~~~L~~ll-~~--l~~~~IVFv~t~~~~~~a~~l~~~L~~~--g~~a~~lhg~~~----~~~ 367 (1171)
T TIGR01054 297 GSDTLRNVVDVYVEDEDLKETLLEIV-KK--LGTGGIVYVSIDYGKEKAEEIAEFLENH--GVKAVAYHATKP----KED 367 (1171)
T ss_pred ccccccceEEEEEecccHHHHHHHHH-HH--cCCCEEEEEeccccHHHHHHHHHHHHhC--CceEEEEeCCCC----HHH
Confidence 1 112233332222 2 22233322 22 256789999998 8899999999987 899999999997 378
Q ss_pred HHHHhcCCceEEEe----cccccccccccC-CCEEEEecCCCC
Q 006476 345 MEKFAQGAIKILIC----TNIVESGLDIQN-ANTIIVQDVQQF 382 (643)
Q Consensus 345 ~~~F~~g~~~ILVa----T~i~~~GiDip~-v~~VI~~d~p~~ 382 (643)
+++|++|+++|||| |++++||||+|+ +++||++|.|.+
T Consensus 368 l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 368 YEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred HHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 99999999999999 589999999999 899999999974
No 78
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.6e-31 Score=300.27 Aligned_cols=309 Identities=18% Similarity=0.206 Sum_probs=223.1
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHH
Q 006476 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 159 (643)
Q Consensus 80 ~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~ 159 (643)
+.........|++.|..+...+.. | .|+.+.||+|||++|.+|++.....|++|+|++||++||.|+++.+
T Consensus 69 ea~~R~~g~~p~~vQl~~~~~l~~-------G--~Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~ 139 (790)
T PRK09200 69 EAAKRVLGMRPYDVQLIGALVLHE-------G--NIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEM 139 (790)
T ss_pred HHHHHHhCCCCchHHHHhHHHHcC-------C--ceeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHH
Confidence 344456677999999999876632 2 3999999999999999999988888999999999999999999999
Q ss_pred HHHhcCCCCceEEEEeCCCC-hHHHHHHHHHHhcCCceEEEechHhh-----hccc-------ccCccceEEeeccccc-
Q 006476 160 SERFSKYPDIKVGLLSRFQS-KAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRV-------VYNNLGLLVVDEEQRF- 225 (643)
Q Consensus 160 ~~~~~~~~~i~v~~l~g~~~-~~~~~~~~~~l~~g~~dIiI~T~~~L-----~~~~-------~~~~l~llViDEah~~- 225 (643)
...+.. .|++++++.|+.+ ..+++.. ..+||++|||+.+ .+.+ ..+++.++||||+|++
T Consensus 140 ~~l~~~-lGl~v~~i~g~~~~~~~r~~~------y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 140 GQVYEF-LGLTVGLNFSDIDDASEKKAI------YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HHHHhh-cCCeEEEEeCCCCcHHHHHHh------cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 985554 4899999999887 5554432 2389999999877 2322 3477899999999962
Q ss_pred -----------ch--------hHH-HHHHhcCC--------C--------------------------------------
Q 006476 226 -----------GV--------KQK-EKIASFKI--------S-------------------------------------- 239 (643)
Q Consensus 226 -----------g~--------~~~-~~l~~~~~--------~-------------------------------------- 239 (643)
|. ... .....+.. .
T Consensus 213 iDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~A 292 (790)
T PRK09200 213 LDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILA 292 (790)
T ss_pred eccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHH
Confidence 00 000 00000000 0
Q ss_pred -----------------------------------------------------------------------ceEEEeccC
Q 006476 240 -----------------------------------------------------------------------VDVLTLSAT 248 (643)
Q Consensus 240 -----------------------------------------------------------------------~~vl~lSAT 248 (643)
.++.+||+|
T Consensus 293 l~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGT 372 (790)
T PRK09200 293 LRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGT 372 (790)
T ss_pred HHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCC
Confidence 123334444
Q ss_pred CChHhHHHHHhcCCCcceeeCCCCC---ccceeEEEccCCHHHHHHHHH----HHHhcCCeEEEEecCccChHHHHHHHH
Q 006476 249 PIPRTLYLALTGFRDASLISTPPPE---RLPIKTHLSAFSKEKVISAIK----YELDRGGQVFYVLPRIKGLEEPMDFLQ 321 (643)
Q Consensus 249 p~~~~~~~~~~~~~~~~~i~~~~~~---~~~v~~~~~~~~~~~~~~~i~----~~l~~~~qvlvf~~~~~~~e~l~~~L~ 321 (643)
...... .+....+..++.+|+.. +......+.. +......++. .....+.+++|||++++.++.++..|.
T Consensus 373 a~t~~~--e~~~~Y~l~v~~IPt~kp~~r~d~~~~i~~-~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~ 449 (790)
T PRK09200 373 AKTEEK--EFFEVYNMEVVQIPTNRPIIRIDYPDKVFV-TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLD 449 (790)
T ss_pred ChHHHH--HHHHHhCCcEEECCCCCCcccccCCCeEEc-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH
Confidence 322111 11222334444444432 1122222222 2222333333 333467899999999999999999999
Q ss_pred hhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccc---cCCC-----EEEEecCCCCCHHHHHHHHhc
Q 006476 322 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI---QNAN-----TIIVQDVQQFGLAQLYQLRGR 393 (643)
Q Consensus 322 ~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDi---p~v~-----~VI~~d~p~~s~~~~~Qr~GR 393 (643)
.. ++++..+||++.+.++..+...+..| +|+|||++++||+|+ |++. +||+++.|. +...|.||+||
T Consensus 450 ~~--gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~-s~r~y~qr~GR 524 (790)
T PRK09200 450 EA--GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERME-SRRVDLQLRGR 524 (790)
T ss_pred HC--CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCC-CHHHHHHhhcc
Confidence 98 89999999999988888787777666 799999999999999 7998 999999998 99999999999
Q ss_pred cCCCCCceEEEEEecCCCC
Q 006476 394 VGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 394 ~GR~g~~g~a~~l~~~~~~ 412 (643)
+||.|++|.|++|++.++.
T Consensus 525 tGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 525 SGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred ccCCCCCeeEEEEEcchHH
Confidence 9999999999999986643
No 79
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=7e-31 Score=280.94 Aligned_cols=284 Identities=20% Similarity=0.245 Sum_probs=192.2
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCC---CCc
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY---PDI 169 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~---~~i 169 (643)
+|.++++.+.+ ....++++++|||||||++|+++++. .+.++++++|+++|+.|+++++.+.+..+ .+.
T Consensus 1 hQ~~~~~~~~~-----~~~~~~~i~apTGsGKT~~~~~~~l~---~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQS-----KDADIIFNTAPTGAGKTLAWLTPLLH---GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHc-----CCCCEEEEECCCCCCHHHHHHHHHHH---cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 59999999875 12245899999999999999998875 35679999999999999999999877543 246
Q ss_pred eEEEEeCCCChHHHHHH-----------------HHHHhcCCceEEEechHhhhccc-------------ccCccceEEe
Q 006476 170 KVGLLSRFQSKAEKEEH-----------------LDMIKHGHLNIIVGTHSLLGSRV-------------VYNNLGLLVV 219 (643)
Q Consensus 170 ~v~~l~g~~~~~~~~~~-----------------~~~l~~g~~dIiI~T~~~L~~~~-------------~~~~l~llVi 219 (643)
.+..++|.... +.+.. ...+....++|+++||+.+.... .+.++++||+
T Consensus 73 ~v~~~~g~~~~-d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 73 NLLHVSKATLK-DIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred eEEEecCCchH-HHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 67777774221 10000 11223346889999998764210 1478999999
Q ss_pred ecccccchhH----------HHHHHhcCCCceEEEeccCCChHhHHHHHhc--CCCccee-eCC--------------CC
Q 006476 220 DEEQRFGVKQ----------KEKIASFKISVDVLTLSATPIPRTLYLALTG--FRDASLI-STP--------------PP 272 (643)
Q Consensus 220 DEah~~g~~~----------~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~--~~~~~~i-~~~--------------~~ 272 (643)
||+|.++... ...+.......+++++|||+++......... +...... .-. +.
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 231 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKT 231 (357)
T ss_pred ecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccc
Confidence 9999875321 1222323345799999999987655443321 2211111 000 00
Q ss_pred -Ccc----ceeEEEcc---CCHHH---HHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHH
Q 006476 273 -ERL----PIKTHLSA---FSKEK---VISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSR 339 (643)
Q Consensus 273 -~~~----~v~~~~~~---~~~~~---~~~~i~~~l--~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~ 339 (643)
+.. ++...+.. +.... +.+.+.+.+ ..+++++||||++..++.++..|+....+..+..+||.+++.
T Consensus 232 ~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~ 311 (357)
T TIGR03158 232 QSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKK 311 (357)
T ss_pred cccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHH
Confidence 001 23322222 11111 222233323 246799999999999999999999863356788999999999
Q ss_pred HHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccC
Q 006476 340 QLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 395 (643)
Q Consensus 340 ~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~G 395 (643)
+|+++ ++.+|||||+++++|||+|++ +|| ++ |. +.++|+||+||+|
T Consensus 312 ~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~-~~~~yiqR~GR~g 357 (357)
T TIGR03158 312 DRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-AR-DAAAFWQRLGRLG 357 (357)
T ss_pred HHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CC-CHHHHhhhcccCC
Confidence 88755 378999999999999999976 666 45 54 7999999999997
No 80
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=1.1e-30 Score=291.48 Aligned_cols=307 Identities=22% Similarity=0.288 Sum_probs=228.9
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH----------CCCeEEEEeccHHHHHHHHHH
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS----------AGKQAMVLAPTIVLAKQHFDV 158 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~----------~g~~vlil~Pt~~La~Q~~~~ 158 (643)
.++.+|.+++|.+.+ ...|+|||||||||||.+|++++++.+. ++.++++++|+++||.++++.
T Consensus 110 ~fN~iQS~vFp~aY~------SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 110 EFNRIQSEVFPVAYK------SNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred HHHHHHHHhhhhhhc------CCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 788999999999875 3578999999999999999999999887 467999999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhh--------cccccCccceEEeeccccc----c
Q 006476 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG--------SRVVYNNLGLLVVDEEQRF----G 226 (643)
Q Consensus 159 ~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~--------~~~~~~~l~llViDEah~~----g 226 (643)
|.++|+.+ |++|..++|+......+ . -+++|+|+||+.+- +...+..++||||||+|.+ |
T Consensus 184 ~~kkl~~~-gi~v~ELTGD~ql~~te-i------~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RG 255 (1230)
T KOG0952|consen 184 FSKKLAPL-GISVRELTGDTQLTKTE-I------ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRG 255 (1230)
T ss_pred Hhhhcccc-cceEEEecCcchhhHHH-H------HhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCccc
Confidence 99999988 89999999976544322 2 24899999999662 1234578899999999976 2
Q ss_pred hhHH-------HHHHhcCCCceEEEeccCCChHhH-HHHHhcCC-CcceeeCCC-CCccceeEEEccC-----------C
Q 006476 227 VKQK-------EKIASFKISVDVLTLSATPIPRTL-YLALTGFR-DASLISTPP-PERLPIKTHLSAF-----------S 285 (643)
Q Consensus 227 ~~~~-------~~l~~~~~~~~vl~lSATp~~~~~-~~~~~~~~-~~~~i~~~~-~~~~~v~~~~~~~-----------~ 285 (643)
.... .........+++|++|||.+.-.. ..++ ... -..+..... ....|....+... -
T Consensus 256 pvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL-~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~ 334 (1230)
T KOG0952|consen 256 PVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFL-RVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNI 334 (1230)
T ss_pred chHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHh-cCCCccceeeecccccccceeeeEEeeecccchhhhhhH
Confidence 2111 111223467899999999744221 2121 111 111111111 0112222222111 1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC----------CC-----------CcEEEEeCCCCHHHHHHH
Q 006476 286 KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF----------PG-----------VDIAIAHGQQYSRQLEET 344 (643)
Q Consensus 286 ~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~----------p~-----------~~v~~~hg~~~~~~r~~v 344 (643)
.+...+.+.+.+.+|.|++|||+++....+.|+.|.+.. |+ ..++++|++|...+|..+
T Consensus 335 d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~ 414 (1230)
T KOG0952|consen 335 DEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLV 414 (1230)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHH
Confidence 233566777788899999999999999888888886542 11 368899999999999999
Q ss_pred HHHHhcCCceEEEecccccccccccCCCEEEEecCCCC----------CHHHHHHHHhccCCC--CCceEEEEEecCCC
Q 006476 345 MEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF----------GLAQLYQLRGRVGRA--DKEAHAYLFYPDKS 411 (643)
Q Consensus 345 ~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~----------s~~~~~Qr~GR~GR~--g~~g~a~~l~~~~~ 411 (643)
...|..|.++||+||..++.|+|+| +.+||+-+.+-| |.-+..|..|||||. +..|.++++.+.+.
T Consensus 415 E~~F~~G~i~vL~cTaTLAwGVNLP-A~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dk 492 (1230)
T KOG0952|consen 415 EKEFKEGHIKVLCCTATLAWGVNLP-AYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDK 492 (1230)
T ss_pred HHHHhcCCceEEEecceeeeccCCc-ceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccH
Confidence 9999999999999999999999999 888888554433 355778999999999 67799998887764
No 81
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.98 E-value=6.9e-30 Score=288.09 Aligned_cols=307 Identities=17% Similarity=0.191 Sum_probs=208.2
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 168 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~ 168 (643)
.++|+|.+++..+.. ....+++++||+|||++|.+|++.....|+.|+|++|+++||.|+++.+...+. +.|
T Consensus 68 glrpydVQlig~l~l-------~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~-~LG 139 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL-------HQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYE-WLG 139 (762)
T ss_pred CCCccHHHHHHHHHh-------cCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHh-hcC
Confidence 345555555544432 123699999999999999999987778889999999999999999999987444 448
Q ss_pred ceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhh-c-----------ccccCccceEEeeccccc-----------
Q 006476 169 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-S-----------RVVYNNLGLLVVDEEQRF----------- 225 (643)
Q Consensus 169 i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~-~-----------~~~~~~l~llViDEah~~----------- 225 (643)
++++.+.++....+.....+... ..+||++|||+.|. + ...++++.++|+||||.+
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~-y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartplii 218 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKI-YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHh-CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeee
Confidence 99988776421111111111112 24899999999882 2 123578899999999962
Q ss_pred -chh--------H-HHHHHhcCC---------------------------------------------------------
Q 006476 226 -GVK--------Q-KEKIASFKI--------------------------------------------------------- 238 (643)
Q Consensus 226 -g~~--------~-~~~l~~~~~--------------------------------------------------------- 238 (643)
|.. . ....+.+..
T Consensus 219 sg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 298 (762)
T TIGR03714 219 SGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRN 298 (762)
T ss_pred eCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 000 0 000111000
Q ss_pred ------------------------------------------------------------CceEEEeccCCChHhHHHHH
Q 006476 239 ------------------------------------------------------------SVDVLTLSATPIPRTLYLAL 258 (643)
Q Consensus 239 ------------------------------------------------------------~~~vl~lSATp~~~~~~~~~ 258 (643)
-.++.+||+|.......+.
T Consensus 299 ~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~- 377 (762)
T TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI- 377 (762)
T ss_pred CceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH-
Confidence 0223445555322222211
Q ss_pred hcCCCcceeeCCCCCc---cceeEEEccCCH---HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEE
Q 006476 259 TGFRDASLISTPPPER---LPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 332 (643)
Q Consensus 259 ~~~~~~~~i~~~~~~~---~~v~~~~~~~~~---~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~ 332 (643)
...+..++.+|+... ......+..... ..+.+.+......+.+++|||++++.++.++..|... ++++.++
T Consensus 378 -~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~--gi~~~~L 454 (762)
T TIGR03714 378 -ETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLRE--GIPHNLL 454 (762)
T ss_pred -HHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC--CCCEEEe
Confidence 223344444444321 111111221121 2233333344456789999999999999999999988 8999999
Q ss_pred eCCCCHHHHHHHHHHHhcCCceEEEeccccccccccc---------CCCEEEEecCCCCCHHHHHHHHhccCCCCCceEE
Q 006476 333 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ---------NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHA 403 (643)
Q Consensus 333 hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip---------~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a 403 (643)
||++.+.++..+..+++.| .|+|||++++||+||| ++++|+++++|. .... .||+||+||.|++|.+
T Consensus 455 ~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps-~rid-~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 455 NAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMEN-SRVD-LQLRGRSGRQGDPGSS 530 (762)
T ss_pred cCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCC-cHHH-HHhhhcccCCCCceeE
Confidence 9999998888877777666 7999999999999999 999999999996 4444 9999999999999999
Q ss_pred EEEecCCCC
Q 006476 404 YLFYPDKSL 412 (643)
Q Consensus 404 ~~l~~~~~~ 412 (643)
++|++.++.
T Consensus 531 ~~~is~eD~ 539 (762)
T TIGR03714 531 QFFVSLEDD 539 (762)
T ss_pred EEEEccchh
Confidence 999987654
No 82
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.5e-31 Score=272.91 Aligned_cols=370 Identities=16% Similarity=0.227 Sum_probs=280.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHH-HHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 189 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~-~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~ 189 (643)
.+-++++|+||||||.+.-..++.. ......|++..|.|..|.+++.++.+.+.-..|..|++..++.++...+..++
T Consensus 62 nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lk- 140 (699)
T KOG0925|consen 62 NQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLK- 140 (699)
T ss_pred CceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHHH-
Confidence 4678999999999999865555443 33457899999999999999999999988777889999999998888777765
Q ss_pred HhcCCceEEEechHhhhc----ccccCccceEEeecccccch------hHHHHHHhcCCCceEEEeccCCChHhHHHHHh
Q 006476 190 IKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRFGV------KQKEKIASFKISVDVLTLSATPIPRTLYLALT 259 (643)
Q Consensus 190 l~~g~~dIiI~T~~~L~~----~~~~~~l~llViDEah~~g~------~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~ 259 (643)
++|.++|.+ +..+..+++||+||||+-.. ...+.+...+++.+++.||||.... .+..
T Consensus 141 ---------y~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~---Kfq~ 208 (699)
T KOG0925|consen 141 ---------YCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKLVVMSATLDAE---KFQR 208 (699)
T ss_pred ---------HhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceEEEeecccchH---HHHH
Confidence 456666653 45678999999999997311 1122233335799999999998444 4567
Q ss_pred cCCCcceeeCCCCCccceeEEEccCCHHHHHHHHHHHH------hcCCeEEEEecCccChHHHHHHHHhhC-------CC
Q 006476 260 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYEL------DRGGQVFYVLPRIKGLEEPMDFLQQAF-------PG 326 (643)
Q Consensus 260 ~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~i~~~l------~~~~qvlvf~~~~~~~e~l~~~L~~~~-------p~ 326 (643)
++.+++++.+|. ..|+..++....+....++..+.+ +..|.+++|.+..++++..++.+.... ..
T Consensus 209 yf~n~Pll~vpg--~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~ 286 (699)
T KOG0925|consen 209 YFGNAPLLAVPG--THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGP 286 (699)
T ss_pred HhCCCCeeecCC--CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCC
Confidence 788999998864 788888776655544444444322 346999999999999999998887432 23
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhc---C--CceEEEecccccccccccCCCEEEEecCC-----------------CCCH
Q 006476 327 VDIAIAHGQQYSRQLEETMEKFAQ---G--AIKILICTNIVESGLDIQNANTIIVQDVQ-----------------QFGL 384 (643)
Q Consensus 327 ~~v~~~hg~~~~~~r~~v~~~F~~---g--~~~ILVaT~i~~~GiDip~v~~VI~~d~p-----------------~~s~ 384 (643)
.+|.++| +.++..+++.... | ..+|+|+|++++..+.++++.+||+-+.. ..|-
T Consensus 287 l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISk 362 (699)
T KOG0925|consen 287 LKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISK 362 (699)
T ss_pred ceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchH
Confidence 5788888 4444555443322 2 36899999999999999999999975432 1256
Q ss_pred HHHHHHHhccCCCCCceEEEEEecCCCCCcHHHHHHHHHHHHHhhcccchhhhhhhcccccCCCccCccccCCccchhhh
Q 006476 385 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVD 464 (643)
Q Consensus 385 ~~~~Qr~GR~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~~~~~~ 464 (643)
++-.||.||+||. ++|.||.+|+++.+..+........+.+.+. +...+.++.+.|.+.+++ .+++..+.+
T Consensus 363 asA~qR~gragrt-~pGkcfrLYte~~~~~em~~~typeilrsNL--~s~VL~LKklgI~dlvhf------dfmDpPAPE 433 (699)
T KOG0925|consen 363 ASAQQRAGRAGRT-RPGKCFRLYTEEAFEKEMQPQTYPEILRSNL--SSTVLQLKKLGIDDLVHF------DFMDPPAPE 433 (699)
T ss_pred hHHHHHhhhccCC-CCCceEEeecHHhhhhcCCCCCcHHHHHHhh--HHHHHHHHhcCcccccCC------cCCCCCChH
Confidence 7889999999998 6899999999887766655555666666554 567788888877777765 566777888
Q ss_pred hHHHHHHH--HHhhhcCccccccCCcceeEeeccCCCCCccccCCCC
Q 006476 465 LFFEMLFE--SLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 509 (643)
Q Consensus 465 ~~~~~l~~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 509 (643)
..++.|++ .+++++++.. .+++|..+++||+||.+++++|.+.+
T Consensus 434 tLMrALE~LnYLaaLdDdGn-LT~lG~imSEFPLdPqLAkmLi~S~e 479 (699)
T KOG0925|consen 434 TLMRALEVLNYLAALDDDGN-LTSLGEIMSEFPLDPQLAKMLIGSCE 479 (699)
T ss_pred HHHHHHHHhhhhhhhCCCcc-cchhhhhhhcCCCChHHHHHHhhcCC
Confidence 88888876 5777776654 56899999999999999999998854
No 83
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.3e-31 Score=281.03 Aligned_cols=374 Identities=16% Similarity=0.213 Sum_probs=283.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHH-HHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 189 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~-~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~ 189 (643)
+.-++|+|.||||||.+....++.. ..+++.+-+..|+|+.|..++.++++.++...|-.|++..+|.+...
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~------- 443 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTS------- 443 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCC-------
Confidence 4678999999999999976655543 23345778889999999999999999998877889999999876654
Q ss_pred HhcCCceEEEechHhhhc----ccccCccceEEeecccccc------hhHHHHHHhcCCCceEEEeccCCChHhHHHHHh
Q 006476 190 IKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRFG------VKQKEKIASFKISVDVLTLSATPIPRTLYLALT 259 (643)
Q Consensus 190 l~~g~~dIiI~T~~~L~~----~~~~~~l~llViDEah~~g------~~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~ 259 (643)
....|-+.|.+.|++ +-.+..+++||+||||+-. +...+.....+.+.++|.+|||+....+. .
T Consensus 444 ---~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~kf~---n 517 (1042)
T KOG0924|consen 444 ---EDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFS---N 517 (1042)
T ss_pred ---CceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHHHH---H
Confidence 346788899887754 3457889999999999721 22233334445799999999999665443 3
Q ss_pred cCCCcceeeCCCCCccceeEEEccCCHHHHHHHHHH-HH-----hcCCeEEEEecCccChHHHHHHHHhhC------C--
Q 006476 260 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKY-EL-----DRGGQVFYVLPRIKGLEEPMDFLQQAF------P-- 325 (643)
Q Consensus 260 ~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~i~~-~l-----~~~~qvlvf~~~~~~~e~l~~~L~~~~------p-- 325 (643)
++.+.+.+.+ |...+|+.+.......+...++..+ .+ ...|.++||.+..+.++..+..++..+ |
T Consensus 518 fFgn~p~f~I-pGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~ 596 (1042)
T KOG0924|consen 518 FFGNCPQFTI-PGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTT 596 (1042)
T ss_pred HhCCCceeee-cCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCC
Confidence 3445555544 5677899998877776666555443 22 234899999999999888887776543 3
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCC-----------------CCHHHHH
Q 006476 326 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ-----------------FGLAQLY 388 (643)
Q Consensus 326 ~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~-----------------~s~~~~~ 388 (643)
++.|.+++++|+..-+.++++.-..|..+++|||+++++.+.+|++.+||+.+... .|.++-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~ 676 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANAD 676 (1042)
T ss_pred ceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccch
Confidence 67899999999999999999999999999999999999999999999999855321 2446678
Q ss_pred HHHhccCCCCCceEEEEEecCCCCCcHHHHHHHHHHHHHhhcccchhhhhhhcccccCCCccCccccCCccchhh--hhH
Q 006476 389 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGV--DLF 466 (643)
Q Consensus 389 Qr~GR~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~~~~~--~~~ 466 (643)
||.|||||.| +|.||.+|+.+....+.....++.|++++. +...+.++.+ |..+++++...+.+...++ .+|
T Consensus 677 QRaGRAGRt~-pG~cYRlYTe~ay~~eml~stvPEIqRTNl--~nvVLlLksl---gV~dll~FdFmD~Pped~~~~sly 750 (1042)
T KOG0924|consen 677 QRAGRAGRTG-PGTCYRLYTEDAYKNEMLPSTVPEIQRTNL--SNVVLLLKSL---GVDDLLKFDFMDPPPEDNLLNSLY 750 (1042)
T ss_pred hhccccCCCC-CcceeeehhhhHHHhhcccCCCchhhhcch--hhHHHHHHhc---ChhhhhCCCcCCCCHHHHHHHHHH
Confidence 9999999996 799999999987777777777788887764 4566666666 4568888887776654332 233
Q ss_pred HHHHHHHHhhhcCccccccCCcceeEeeccCCCCCccccCCC
Q 006476 467 FEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHL 508 (643)
Q Consensus 467 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 508 (643)
.-+ .|.++++... .|++|..|+++|+||-+++.++.+.
T Consensus 751 ~Lw---~LGAl~~~g~-LT~lG~~MvefpLDP~lsKmll~a~ 788 (1042)
T KOG0924|consen 751 QLW---TLGALDNTGQ-LTPLGRKMVEFPLDPPLSKMLLMAA 788 (1042)
T ss_pred HHH---HhhccccCCc-cchhhHHhhhCCCCchHHHHHHHHh
Confidence 222 3556665433 5789999999999999999877653
No 84
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=9.2e-31 Score=267.47 Aligned_cols=318 Identities=19% Similarity=0.185 Sum_probs=249.7
Q ss_pred hHHHHHhcCCC--CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHH
Q 006476 78 AIAEFAAQFPY--EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155 (643)
Q Consensus 78 ~~~~~~~~~~~--~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~ 155 (643)
..+.+.+.|.+ --+|.|.+|+..+.+ +..|+.+++|||+||+++|.+|++.+ +..++|+.|..+|...+
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK------~k~DVyVsMPTGaGKSLCyQLPaL~~---~gITIV~SPLiALIkDQ 77 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVK------RKCDVYVSMPTGAGKSLCYQLPALVH---GGITIVISPLIALIKDQ 77 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHh------ccCcEEEeccCCCchhhhhhchHHHh---CCeEEEehHHHHHHHHH
Confidence 45567777776 448999999998875 25899999999999999999998766 66999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCC--ceEEEechHhhh---------cccccCccceEEeecccc
Q 006476 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH--LNIIVGTHSLLG---------SRVVYNNLGLLVVDEEQR 224 (643)
Q Consensus 156 ~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~--~dIiI~T~~~L~---------~~~~~~~l~llViDEah~ 224 (643)
.+.+... .+.+..+.+..+..++.+.+.+++..+ ..+++-||+.-. ....-+-+.++|+||||+
T Consensus 78 iDHL~~L-----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHC 152 (641)
T KOG0352|consen 78 IDHLKRL-----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHC 152 (641)
T ss_pred HHHHHhc-----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhh
Confidence 9988763 578888999889999999998888754 567889997432 223346689999999997
Q ss_pred c---ch------hHHHHHHhcCCCceEEEeccCCChHhHHHHHhc--CCCcceeeCCCCCcccee--EEE---ccCCHHH
Q 006476 225 F---GV------KQKEKIASFKISVDVLTLSATPIPRTLYLALTG--FRDASLISTPPPERLPIK--THL---SAFSKEK 288 (643)
Q Consensus 225 ~---g~------~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~--~~~~~~i~~~~~~~~~v~--~~~---~~~~~~~ 288 (643)
. |. -....|+...+++..+++|||..+.+.+..... ++.+.-+...|.-|.+.- ..+ ....-..
T Consensus 153 VSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~ 232 (641)
T KOG0352|consen 153 VSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTV 232 (641)
T ss_pred HhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHh
Confidence 4 22 223445666689999999999988876554333 344443333333222110 000 0111123
Q ss_pred HHHHHHHHHhc-----------CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEE
Q 006476 289 VISAIKYELDR-----------GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILI 357 (643)
Q Consensus 289 ~~~~i~~~l~~-----------~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILV 357 (643)
+.+.....+.+ .|--+|+|.+++.||.++-.|... |++...+|+++...+|.++.++|.+++..|++
T Consensus 233 LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~--Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~ 310 (641)
T KOG0352|consen 233 LADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA--GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIA 310 (641)
T ss_pred HHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc--CcchHHHhcccccchhHHHHHHHhcCCCCEEE
Confidence 44444444431 256799999999999999999887 99999999999999999999999999999999
Q ss_pred ecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCC
Q 006476 358 CTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 358 aT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~ 412 (643)
||..+++|+|-|+|+.||+++.+. +++-|||-.||+||.|.+.+|-++|+.++.
T Consensus 311 AT~SFGMGVDKp~VRFViHW~~~q-n~AgYYQESGRAGRDGk~SyCRLYYsR~D~ 364 (641)
T KOG0352|consen 311 ATVSFGMGVDKPDVRFVIHWSPSQ-NLAGYYQESGRAGRDGKRSYCRLYYSRQDK 364 (641)
T ss_pred EEeccccccCCcceeEEEecCchh-hhHHHHHhccccccCCCccceeeeecccch
Confidence 999999999999999999999998 999999999999999999999999998765
No 85
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=1e-30 Score=301.50 Aligned_cols=316 Identities=20% Similarity=0.238 Sum_probs=256.5
Q ss_pred hHHHHHhcCCC-CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHH
Q 006476 78 AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156 (643)
Q Consensus 78 ~~~~~~~~~~~-~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~ 156 (643)
....+...|.. ..+|-|.+||..++. |+|+++.+|||+||+++|.+|++-. ++-++||.|..+|.+.+.
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~-------Gkd~fvlmpTG~GKSLCYQlPA~l~---~gitvVISPL~SLm~DQv 321 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLS-------GKDCFVLMPTGGGKSLCYQLPALLL---GGVTVVISPLISLMQDQV 321 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHc-------CCceEEEeecCCceeeEeecccccc---CCceEEeccHHHHHHHHH
Confidence 33445555655 889999999997764 7899999999999999999998765 679999999999999988
Q ss_pred HHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcC--CceEEEechHhhhcc-------cccCc---cceEEeecccc
Q 006476 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG--HLNIIVGTHSLLGSR-------VVYNN---LGLLVVDEEQR 224 (643)
Q Consensus 157 ~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g--~~dIiI~T~~~L~~~-------~~~~~---l~llViDEah~ 224 (643)
..+... ++....+++..+..++..+++.+..| .++|++-||+.+... ..+.. +.++||||||+
T Consensus 322 ~~L~~~-----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 322 THLSKK-----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred Hhhhhc-----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHH
Confidence 777442 79999999999999999999999999 899999999987532 12233 78999999997
Q ss_pred c---c------hhHHHHHHhcCCCceEEEeccCCChHhHHHHHh--cCCCcceeeCCCCCccceeEEEccCC-HHHHHHH
Q 006476 225 F---G------VKQKEKIASFKISVDVLTLSATPIPRTLYLALT--GFRDASLISTPPPERLPIKTHLSAFS-KEKVISA 292 (643)
Q Consensus 225 ~---g------~~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~--~~~~~~~i~~~~~~~~~v~~~~~~~~-~~~~~~~ 292 (643)
. | ++....++...+++.++++|||..+++...... ++.++.++. ...++......+.... .......
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~-~sfnR~NL~yeV~~k~~~~~~~~~ 475 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK-SSFNRPNLKYEVSPKTDKDALLDI 475 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec-ccCCCCCceEEEEeccCccchHHH
Confidence 3 2 344455666667799999999998888765543 455555443 3344555555444433 2222222
Q ss_pred HH--HHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccC
Q 006476 293 IK--YELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370 (643)
Q Consensus 293 i~--~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~ 370 (643)
.. +....++..||+|.++.+|+.++..|+.. +.+...+|++|+..+|+.|..+|..++++|+|||=++++|||.|+
T Consensus 476 ~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~--~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~D 553 (941)
T KOG0351|consen 476 LEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL--GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPD 553 (941)
T ss_pred HHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh--chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCc
Confidence 22 12234578999999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCC
Q 006476 371 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 371 v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~ 412 (643)
|+.||+|..|+ +++.|||-+|||||.|...+|.+||...+.
T Consensus 554 VR~ViH~~lPk-s~E~YYQE~GRAGRDG~~s~C~l~y~~~D~ 594 (941)
T KOG0351|consen 554 VRFVIHYSLPK-SFEGYYQEAGRAGRDGLPSSCVLLYGYADI 594 (941)
T ss_pred eeEEEECCCch-hHHHHHHhccccCcCCCcceeEEecchhHH
Confidence 99999999999 999999999999999999999999987743
No 86
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=6.8e-30 Score=296.64 Aligned_cols=323 Identities=18% Similarity=0.186 Sum_probs=245.4
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCC--eEEEEeccHHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK--QAMVLAPTIVLAKQH 155 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~--~vlil~Pt~~La~Q~ 155 (643)
+...+.+.++..|.++|.+|+..+.+ ++|++|+.+||||||++|++|++..+..++ ++|+|.||++||+.+
T Consensus 59 l~~~l~~~g~~~lY~HQ~~A~~~~~~-------G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ 131 (851)
T COG1205 59 LKSALVKAGIERLYSHQVDALRLIRE-------GRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQ 131 (851)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHC-------CCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhH
Confidence 57788899999999999999998865 689999999999999999999999987765 569999999999999
Q ss_pred HHHHHHHhcCCC-CceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc---------ccccCccceEEeeccccc
Q 006476 156 FDVVSERFSKYP-DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS---------RVVYNNLGLLVVDEEQRF 225 (643)
Q Consensus 156 ~~~~~~~~~~~~-~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~---------~~~~~~l~llViDEah~~ 225 (643)
.++|.+..+.++ ++++..++|.....+++ .+..+.++|+++||.+|.- ...++++.+||+||+|-+
T Consensus 132 ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY 207 (851)
T COG1205 132 AERLRELISDLPGKVTFGRYTGDTPPEERR----AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY 207 (851)
T ss_pred HHHHHHHHHhCCCcceeeeecCCCChHHHH----HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec
Confidence 999999888776 68899999987776654 3445789999999998753 123578999999999974
Q ss_pred ----chhHH-------HHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcce-eeCCCCCccceeEEEccC---------
Q 006476 226 ----GVKQK-------EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL-ISTPPPERLPIKTHLSAF--------- 284 (643)
Q Consensus 226 ----g~~~~-------~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~-i~~~~~~~~~v~~~~~~~--------- 284 (643)
|.... ..+.....+.|+|+.|||............-.+... +......+-+........
T Consensus 208 rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~ 287 (851)
T COG1205 208 RGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESI 287 (851)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhc
Confidence 44322 222333568999999999754443332222222222 222111111111111111
Q ss_pred --C-HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC--CC----CcEEEEeCCCCHHHHHHHHHHHhcCCceE
Q 006476 285 --S-KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF--PG----VDIAIAHGQQYSRQLEETMEKFAQGAIKI 355 (643)
Q Consensus 285 --~-~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~--p~----~~v~~~hg~~~~~~r~~v~~~F~~g~~~I 355 (643)
+ .......+...+..+-++++|+.+...++.++...+..+ .+ ..+..++|+|+..+|.++...|++|+..+
T Consensus 288 r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~ 367 (851)
T COG1205 288 RRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLG 367 (851)
T ss_pred ccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccE
Confidence 1 222344445556678999999999999998874333222 12 46899999999999999999999999999
Q ss_pred EEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 356 LICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 356 LVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
+++|+.++-|+|+..++.||..+.|.-+..++.|+.||+||.++.+..+..+..+.
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~ 423 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDP 423 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCc
Confidence 99999999999999999999999996578999999999999998888877776443
No 87
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.7e-32 Score=260.71 Aligned_cols=290 Identities=22% Similarity=0.250 Sum_probs=224.3
Q ss_pred CCCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC--C-CeEEEEe
Q 006476 71 PPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--G-KQAMVLA 146 (643)
Q Consensus 71 ~~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~--g-~~vlil~ 146 (643)
..|...| +.+++-+.++..|+..|.+|||...- |||++.+|.+|.|||.+|.++.++.+.. | ..++++|
T Consensus 45 rdfllkpellraivdcgfehpsevqhecipqail-------gmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmc 117 (387)
T KOG0329|consen 45 RDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL-------GMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMC 117 (387)
T ss_pred hhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhh-------cchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEe
Confidence 3444444 88999999999999999999998754 6999999999999999999999988765 2 3689999
Q ss_pred ccHHHHHHHHHHHHHHhcCC-CCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhh-----cccccCccceEEee
Q 006476 147 PTIVLAKQHFDVVSERFSKY-PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-----SRVVYNNLGLLVVD 220 (643)
Q Consensus 147 Pt~~La~Q~~~~~~~~~~~~-~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~-----~~~~~~~l~llViD 220 (643)
.||+||.|+.++.. +|+++ |++++.+..|+.+.+...+.+ ++ .++|+||||+++. +.+.++++...|+|
T Consensus 118 htrelafqi~~ey~-rfskymP~vkvaVFfGG~~Ikkdee~l---k~-~PhivVgTPGrilALvr~k~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 118 HTRELAFQISKEYE-RFSKYMPSVKVSVFFGGLFIKKDEELL---KN-CPHIVVGTPGRILALVRNRSLNLKNVKHFVLD 192 (387)
T ss_pred ccHHHHHHHHHHHH-HHHhhCCCceEEEEEcceeccccHHHH---hC-CCeEEEcCcHHHHHHHHhccCchhhcceeehh
Confidence 99999999999986 47776 899999999998776655444 33 6999999999885 35678999999999
Q ss_pred cccccch------hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCccc---eeEEEccCCH---HH
Q 006476 221 EEQRFGV------KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP---IKTHLSAFSK---EK 288 (643)
Q Consensus 221 Eah~~g~------~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~~---v~~~~~~~~~---~~ 288 (643)
||+.+.. ...+..+..+...|+.++|||............+.|+..+......... .++++....+ ..
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNr 272 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNR 272 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhh
Confidence 9998632 2234555667889999999999888887788888887666554433322 2233322221 12
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccc
Q 006476 289 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368 (643)
Q Consensus 289 ~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDi 368 (643)
.+..+...++ -.|+++|+.++.. + .| ..+ +|||++++||+|+
T Consensus 273 kl~dLLd~Le-FNQVvIFvKsv~R--------------------------------l-~f---~kr-~vat~lfgrgmdi 314 (387)
T KOG0329|consen 273 KLNDLLDVLE-FNQVVIFVKSVQR--------------------------------L-SF---QKR-LVATDLFGRGMDI 314 (387)
T ss_pred hhhhhhhhhh-hcceeEeeehhhh--------------------------------h-hh---hhh-hHHhhhhccccCc
Confidence 2222333332 3588888876543 0 03 223 8999999999999
Q ss_pred cCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 369 p~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
..+|.|+|||+|. +..+|+||.||+||.|..|.++.|++.+.
T Consensus 315 ervNi~~NYdmp~-~~DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 315 ERVNIVFNYDMPE-DSDTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred ccceeeeccCCCC-CchHHHHHhhhhhccccccceeehhcchh
Confidence 9999999999998 89999999999999999999999998653
No 88
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.97 E-value=2.8e-29 Score=251.33 Aligned_cols=315 Identities=24% Similarity=0.369 Sum_probs=234.3
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCC
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 167 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 167 (643)
-++||.|+.|-..+...+. +..+.|+.|-||+|||+.....+-.++..|.++.+.+|+...+.+.+.+++.-|.
T Consensus 96 G~Ls~~Q~~as~~l~q~i~---~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~--- 169 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIK---QKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFS--- 169 (441)
T ss_pred cccChhHHHHHHHHHHHHH---hcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhc---
Confidence 3899999999999888774 3689999999999999998888888899999999999999999999999998664
Q ss_pred CceEEEEeCCCChHHHHHHHHHHhcCCceEEEec-hHhhhcccccCccceEEeecccccchhHHHHH-----HhcCCCce
Q 006476 168 DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT-HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKI-----ASFKISVD 241 (643)
Q Consensus 168 ~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T-~~~L~~~~~~~~l~llViDEah~~g~~~~~~l-----~~~~~~~~ 241 (643)
+..+..++|+.+..- ...++|+| |+++. ..+.++++||||+|-|.+.....| +..+.+..
T Consensus 170 ~~~I~~Lyg~S~~~f-----------r~plvVaTtHQLlr---Fk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~ 235 (441)
T COG4098 170 NCDIDLLYGDSDSYF-----------RAPLVVATTHQLLR---FKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGA 235 (441)
T ss_pred cCCeeeEecCCchhc-----------cccEEEEehHHHHH---HHhhccEEEEeccccccccCCHHHHHHHHHhhcccCc
Confidence 578999999654432 24555555 66664 136689999999999866432222 23356777
Q ss_pred EEEeccCCChHhHHHHHhcCCCcceeeCCC---CCccceeEEE--ccCC--------HHHHHHHHHHHHhcCCeEEEEec
Q 006476 242 VLTLSATPIPRTLYLALTGFRDASLISTPP---PERLPIKTHL--SAFS--------KEKVISAIKYELDRGGQVFYVLP 308 (643)
Q Consensus 242 vl~lSATp~~~~~~~~~~~~~~~~~i~~~~---~~~~~v~~~~--~~~~--------~~~~~~~i~~~l~~~~qvlvf~~ 308 (643)
+|.+||||+..-......+-.. .+..|. ....|+..++ ..++ +..+...+.+....+..+++|+|
T Consensus 236 ~IylTATp~k~l~r~~~~g~~~--~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p 313 (441)
T COG4098 236 TIYLTATPTKKLERKILKGNLR--ILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFP 313 (441)
T ss_pred eEEEecCChHHHHHHhhhCCee--EeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEec
Confidence 8999999966544444333211 122211 1122333322 2222 22466777777778899999999
Q ss_pred CccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEE-ecCCCCCHHHH
Q 006476 309 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV-QDVQQFGLAQL 387 (643)
Q Consensus 309 ~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~-~d~p~~s~~~~ 387 (643)
+++..+.+++.|+..+|...++.+|+. ...|.+..+.|++|++++|++|+++|||+.+|++++.+. ...+.|+-+.+
T Consensus 314 ~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaL 391 (441)
T COG4098 314 EIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESAL 391 (441)
T ss_pred chHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHH
Confidence 999999999999999999999999987 357889999999999999999999999999999997663 23344888999
Q ss_pred HHHHhccCCCC--CceEEEEEecCCCCCcHHHHHHHHHHHHHhh
Q 006476 388 YQLRGRVGRAD--KEAHAYLFYPDKSLLSDQALERLAALEECRE 429 (643)
Q Consensus 388 ~Qr~GR~GR~g--~~g~a~~l~~~~~~~~~~~~~rl~~i~~~~~ 429 (643)
+|..||+||.- ..|..++|..........+. +.|++.+.
T Consensus 392 VQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~---keIk~MN~ 432 (441)
T COG4098 392 VQIAGRVGRSLERPTGDVLFFHYGKSKAMKQAR---KEIKEMNK 432 (441)
T ss_pred HHHhhhccCCCcCCCCcEEEEeccchHHHHHHH---HHHHHHHH
Confidence 99999999993 45888887765533233333 34444444
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=4.2e-28 Score=280.77 Aligned_cols=302 Identities=23% Similarity=0.237 Sum_probs=204.1
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC--CeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g--~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
.+.|+|.|..+.... ..+..+++.+|||+|||++++.++......+ .+++|..||+++++|+++++.+.+.
T Consensus 284 ~~~p~p~Q~~~~~~~-------~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~ 356 (878)
T PRK09694 284 GYQPRQLQTLVDALP-------LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALAS 356 (878)
T ss_pred CCCChHHHHHHHhhc-------cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHH
Confidence 569999999874321 1356789999999999999998887665554 6899999999999999999986433
Q ss_pred C-CCCceEEEEeCCCChHHHH---------------------HHHHHH-hc-CCceEEEechHhhh-ccc-----ccCcc
Q 006476 165 K-YPDIKVGLLSRFQSKAEKE---------------------EHLDMI-KH-GHLNIIVGTHSLLG-SRV-----VYNNL 214 (643)
Q Consensus 165 ~-~~~i~v~~l~g~~~~~~~~---------------------~~~~~l-~~-g~~dIiI~T~~~L~-~~~-----~~~~l 214 (643)
. ++..++.+++|........ +.+..- +. --.+|+|||...+. ..+ .++.+
T Consensus 357 ~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~ 436 (878)
T PRK09694 357 KLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGF 436 (878)
T ss_pred HhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHH
Confidence 2 2235678888754311100 111100 00 01589999975443 211 12333
Q ss_pred ----ceEEeecccccchhHHHH----HHhc-CCCceEEEeccCCChHhHHHHHhcCCC---------cceeeC-------
Q 006476 215 ----GLLVVDEEQRFGVKQKEK----IASF-KISVDVLTLSATPIPRTLYLALTGFRD---------ASLIST------- 269 (643)
Q Consensus 215 ----~llViDEah~~g~~~~~~----l~~~-~~~~~vl~lSATp~~~~~~~~~~~~~~---------~~~i~~------- 269 (643)
++|||||+|-+....... ++.+ .....+|+||||+++.........+.. .+.+..
T Consensus 437 ~La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 437 GLGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hhccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 379999999875433222 2221 346789999999976554433221110 001100
Q ss_pred ------CC---CCccceeEEEc---c-CCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC-CCCcEEEEeCC
Q 006476 270 ------PP---PERLPIKTHLS---A-FSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF-PGVDIAIAHGQ 335 (643)
Q Consensus 270 ------~~---~~~~~v~~~~~---~-~~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~-p~~~v~~~hg~ 335 (643)
.+ ..+..+..... . .....+.+.+.+.+..+++++||||+++.++.+++.|++.+ ++..+..+||+
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 00 00111111111 0 22345667777777889999999999999999999999875 34689999999
Q ss_pred CCHHHH----HHHHHHH-hcCC---ceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCC
Q 006476 336 QYSRQL----EETMEKF-AQGA---IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK 399 (643)
Q Consensus 336 ~~~~~r----~~v~~~F-~~g~---~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~ 399 (643)
++..+| +++++.| ++|+ ..|||||+++|+|+|++ ++++|...+| .+.++||+||+||.++
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdlaP---idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQLCP---VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECCCC---HHHHHHHHhccCCCCC
Confidence 999988 4677888 6666 47999999999999995 8999987776 5899999999999975
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=1.5e-28 Score=269.44 Aligned_cols=291 Identities=22% Similarity=0.292 Sum_probs=208.2
Q ss_pred hcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHh
Q 006476 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERF 163 (643)
Q Consensus 84 ~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~ 163 (643)
..+.+.|+|+|.+|+.++.+.+. . .+..++++|||+|||.+++.++... +..++|||||++|+.||++.+...+
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~--~-~~~gvivlpTGaGKT~va~~~~~~~---~~~~Lvlv~~~~L~~Qw~~~~~~~~ 104 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRR--T-ERRGVIVLPTGAGKTVVAAEAIAEL---KRSTLVLVPTKELLDQWAEALKKFL 104 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcc--c-CCceEEEeCCCCCHHHHHHHHHHHh---cCCEEEEECcHHHHHHHHHHHHHhc
Confidence 34567899999999999988542 2 6788999999999999998887766 4459999999999999998887654
Q ss_pred cCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc----c-ccCccceEEeecccccchhHHHHHHhcCC
Q 006476 164 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR----V-VYNNLGLLVVDEEQRFGVKQKEKIASFKI 238 (643)
Q Consensus 164 ~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~----~-~~~~l~llViDEah~~g~~~~~~l~~~~~ 238 (643)
.. ...++.+.+...... + ..|+|+|.+.+... . ..+.+++||+||||+.+......+.....
T Consensus 105 ~~--~~~~g~~~~~~~~~~----------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~ 171 (442)
T COG1061 105 LL--NDEIGIYGGGEKELE----------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLS 171 (442)
T ss_pred CC--ccccceecCceeccC----------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhh
Confidence 32 134666665322111 1 36999999888653 2 22469999999999998766555555545
Q ss_pred Cce-EEEeccCCChHh--HHHHHhcCCCcceeeCCCC-----C-ccceeEEEcc--C-----------------------
Q 006476 239 SVD-VLTLSATPIPRT--LYLALTGFRDASLISTPPP-----E-RLPIKTHLSA--F----------------------- 284 (643)
Q Consensus 239 ~~~-vl~lSATp~~~~--~~~~~~~~~~~~~i~~~~~-----~-~~~v~~~~~~--~----------------------- 284 (643)
... +|+|||||.... ..........+.+...+.. . ..|....... .
T Consensus 172 ~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~ 251 (442)
T COG1061 172 AAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARG 251 (442)
T ss_pred cccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhh
Confidence 555 999999986322 1111111111112111100 0 0111110000 0
Q ss_pred -------------CHHHHHHHHHHHHh---cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHH
Q 006476 285 -------------SKEKVISAIKYELD---RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKF 348 (643)
Q Consensus 285 -------------~~~~~~~~i~~~l~---~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F 348 (643)
........+...+. ++.++++|+.++.+++.++..+... +. +..+.|..+..+|+.+++.|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~--~~-~~~it~~t~~~eR~~il~~f 328 (442)
T COG1061 252 TLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP--GI-VEAITGETPKEEREAILERF 328 (442)
T ss_pred hhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC--Cc-eEEEECCCCHHHHHHHHHHH
Confidence 00011122222223 5679999999999999999998765 55 88999999999999999999
Q ss_pred hcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCC
Q 006476 349 AQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 397 (643)
Q Consensus 349 ~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~ 397 (643)
+.|.+++||++.++.+|+|+|+++++|...... |..+|.||+||+-|.
T Consensus 329 r~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~-S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 329 RTGGIKVLVTVKVLDEGVDIPDADVLIILRPTG-SRRLFIQRLGRGLRP 376 (442)
T ss_pred HcCCCCEEEEeeeccceecCCCCcEEEEeCCCC-cHHHHHHHhhhhccC
Confidence 999999999999999999999999999999977 999999999999994
No 91
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=7.9e-29 Score=274.39 Aligned_cols=307 Identities=22% Similarity=0.271 Sum_probs=208.6
Q ss_pred cCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC--CCeEEEEeccHHHHHHHHHHHHHH
Q 006476 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQHFDVVSER 162 (643)
Q Consensus 85 ~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~--g~~vlil~Pt~~La~Q~~~~~~~~ 162 (643)
...+.++++|.+.+...+ ++|+||++|||+|||.+|...+...+.. ..++++++||+-|+.|+...+...
T Consensus 58 p~~~~lR~YQ~eivq~AL--------gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~ 129 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL--------GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIY 129 (746)
T ss_pred cCcccccHHHHHHhHHhh--------cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhc
Confidence 345699999999876654 4899999999999999999999887653 568999999999999999777654
Q ss_pred hcCCCCceEEEEeCC-CChHHHHHHHHHHhcCCceEEEechHhhhccc------ccCccceEEeeccccc-c---hhH-H
Q 006476 163 FSKYPDIKVGLLSRF-QSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV------VYNNLGLLVVDEEQRF-G---VKQ-K 230 (643)
Q Consensus 163 ~~~~~~i~v~~l~g~-~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~------~~~~l~llViDEah~~-g---~~~-~ 230 (643)
+.+ -.+....|+ .+...+...| ...+|+|.||+.|.+++ .++++.++||||||+. | +.. .
T Consensus 130 ~~~---~~~T~~l~~~~~~~~r~~i~-----~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vm 201 (746)
T KOG0354|consen 130 LIP---YSVTGQLGDTVPRSNRGEIV-----ASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIM 201 (746)
T ss_pred cCc---ccceeeccCccCCCchhhhh-----cccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHH
Confidence 322 344444444 3333444444 24799999999987643 2577999999999985 2 211 2
Q ss_pred -HHHHhcCCCceEEEeccCCChHhHHHHH--hcC---CCc----------------cee---------------------
Q 006476 231 -EKIASFKISVDVLTLSATPIPRTLYLAL--TGF---RDA----------------SLI--------------------- 267 (643)
Q Consensus 231 -~~l~~~~~~~~vl~lSATp~~~~~~~~~--~~~---~~~----------------~~i--------------------- 267 (643)
+.+.......|+|+|||||......... ..+ .+. ..+
T Consensus 202 r~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p 281 (746)
T KOG0354|consen 202 REYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEP 281 (746)
T ss_pred HHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHH
Confidence 2232223344999999998642211100 000 000 000
Q ss_pred ----------------e---C--------------CCCCc--cc----------------ee-----EEEccCC-----H
Q 006476 268 ----------------S---T--------------PPPER--LP----------------IK-----THLSAFS-----K 286 (643)
Q Consensus 268 ----------------~---~--------------~~~~~--~~----------------v~-----~~~~~~~-----~ 286 (643)
. . +...+ +. +. .+...+. .
T Consensus 282 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~ 361 (746)
T KOG0354|consen 282 LLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALK 361 (746)
T ss_pred HHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchh
Confidence 0 0 00000 00 00 0000000 0
Q ss_pred ------------------------------------HHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHh-hCCCC
Q 006476 287 ------------------------------------EKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQ-AFPGV 327 (643)
Q Consensus 287 ------------------------------------~~~~~~i~~~l--~~~~qvlvf~~~~~~~e~l~~~L~~-~~p~~ 327 (643)
+.+.+.+.+.. ....++++|+.+++.++.+..+|.+ ..+++
T Consensus 362 k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~i 441 (746)
T KOG0354|consen 362 KYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGI 441 (746)
T ss_pred HHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccc
Confidence 00111111111 2246899999999999999999984 32445
Q ss_pred cEEEEeC--------CCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCC
Q 006476 328 DIAIAHG--------QQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK 399 (643)
Q Consensus 328 ~v~~~hg--------~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~ 399 (643)
+...+-| +|++.++.+++++|++|+++|||||+++++|+||+.|+.||-||... |+...+||+|| ||. +
T Consensus 442 r~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~s-npIrmIQrrGR-gRa-~ 518 (746)
T KOG0354|consen 442 KAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSS-NPIRMVQRRGR-GRA-R 518 (746)
T ss_pred ccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCc-cHHHHHHHhcc-ccc-c
Confidence 4444443 69999999999999999999999999999999999999999999998 89999999999 998 5
Q ss_pred ceEEEEEecCC
Q 006476 400 EAHAYLFYPDK 410 (643)
Q Consensus 400 ~g~a~~l~~~~ 410 (643)
.|+|+++++..
T Consensus 519 ns~~vll~t~~ 529 (746)
T KOG0354|consen 519 NSKCVLLTTGS 529 (746)
T ss_pred CCeEEEEEcch
Confidence 79999999843
No 92
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.96 E-value=6.7e-27 Score=272.36 Aligned_cols=308 Identities=19% Similarity=0.240 Sum_probs=208.8
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC--CeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g--~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
..|.|+|..++..+... ....+|+..++|.|||..+...+......| +++||+||+ .|..||..++.++|+
T Consensus 151 ~~l~pHQl~~~~~vl~~-----~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~- 223 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRR-----HAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFN- 223 (956)
T ss_pred CCCCHHHHHHHHHHhhc-----cCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhC-
Confidence 58999999998777642 245689999999999999977776655555 589999997 899999999987773
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc------cccCccceEEeecccccc------hhHHHHH
Q 006476 166 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNLGLLVVDEEQRFG------VKQKEKI 233 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~------~~~~~l~llViDEah~~g------~~~~~~l 233 (643)
+...++.+.............. ...+++|+|.+.+..+ +.-.++++|||||||++. ......+
T Consensus 224 ---l~~~i~~~~~~~~~~~~~~~pf--~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v 298 (956)
T PRK04914 224 ---LRFSLFDEERYAEAQHDADNPF--ETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV 298 (956)
T ss_pred ---CCeEEEcCcchhhhcccccCcc--ccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH
Confidence 4555554432111000000000 1357999999888652 223578999999999974 1223334
Q ss_pred HhcC-CCceEEEeccCCChHhHHH--HHhcCCCcce--------------------------------------------
Q 006476 234 ASFK-ISVDVLTLSATPIPRTLYL--ALTGFRDASL-------------------------------------------- 266 (643)
Q Consensus 234 ~~~~-~~~~vl~lSATp~~~~~~~--~~~~~~~~~~-------------------------------------------- 266 (643)
..+. ....+|++||||....... .+..+.++..
T Consensus 299 ~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~ 378 (956)
T PRK04914 299 EQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGE 378 (956)
T ss_pred HHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcc
Confidence 4442 3457899999996311100 0000000000
Q ss_pred -------------------------------------e-eC------CCCCccceeEEEccCC-----------------
Q 006476 267 -------------------------------------I-ST------PPPERLPIKTHLSAFS----------------- 285 (643)
Q Consensus 267 -------------------------------------i-~~------~~~~~~~v~~~~~~~~----------------- 285 (643)
+ .. .-+.+. +..+..+..
T Consensus 379 ~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~-~~~~~l~~~~~y~~~~~~~~~~~~~~ 457 (956)
T PRK04914 379 QDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRE-LHPIPLPLPEQYQTAIKVSLEARARD 457 (956)
T ss_pred cchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCc-eeEeecCCCHHHHHHHHHhHHHHHHh
Confidence 0 00 000000 011100000
Q ss_pred -------------------HHHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHH
Q 006476 286 -------------------KEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEET 344 (643)
Q Consensus 286 -------------------~~~~~~~i~~~l~--~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v 344 (643)
.+...+.+...+. .+.+++|||+++..+..+++.|+... |+++..+||+|++.+|+++
T Consensus 458 ~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~-Gi~~~~ihG~~s~~eR~~~ 536 (956)
T PRK04914 458 MLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRERE-GIRAAVFHEGMSIIERDRA 536 (956)
T ss_pred hcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhcc-CeeEEEEECCCCHHHHHHH
Confidence 0001122333332 35799999999999999999996432 7899999999999999999
Q ss_pred HHHHhcC--CceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCC
Q 006476 345 MEKFAQG--AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 345 ~~~F~~g--~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~ 410 (643)
++.|+++ ..+|||||+++++|+|++.+++||+||.|. ++..|.||+||+||.|+.+.+.+++...
T Consensus 537 ~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~-nP~~~eQRIGR~~RiGQ~~~V~i~~~~~ 603 (956)
T PRK04914 537 AAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPF-NPDLLEQRIGRLDRIGQKHDIQIHVPYL 603 (956)
T ss_pred HHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCC-CHHHHHHHhcccccCCCCceEEEEEccC
Confidence 9999984 599999999999999999999999999996 9999999999999999998876666443
No 93
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.95 E-value=7.1e-27 Score=235.65 Aligned_cols=323 Identities=19% Similarity=0.209 Sum_probs=252.1
Q ss_pred CCCCCh-hHHHHHhcCCC-CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccH
Q 006476 72 PYPKNP-AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149 (643)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~-~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~ 149 (643)
.||+.. ..+-+.+.|.. ..+|.|..+|+..+. +.|.++..|||.||+++|.+|++.+ ++-++|++|..
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma-------~ed~~lil~tgggkslcyqlpal~a---dg~alvi~pli 144 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMA-------GEDAFLILPTGGGKSLCYQLPALCA---DGFALVICPLI 144 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhc-------cCceEEEEeCCCccchhhhhhHHhc---CCceEeechhH
Confidence 467665 45556666655 789999999998865 6899999999999999999998765 77899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhc--CCceEEEechHhhhc----------ccccCccceE
Q 006476 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH--GHLNIIVGTHSLLGS----------RVVYNNLGLL 217 (643)
Q Consensus 150 ~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~--g~~dIiI~T~~~L~~----------~~~~~~l~ll 217 (643)
.|...+.-.+++. |+....+....+..+.+..-..+.+ .+..+++.||+.+.+ .+....+.+|
T Consensus 145 slmedqil~lkql-----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~i 219 (695)
T KOG0353|consen 145 SLMEDQILQLKQL-----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLI 219 (695)
T ss_pred HHHHHHHHHHHHh-----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEE
Confidence 9999988888764 7888888877776666655555554 457899999997753 2334567899
Q ss_pred Eeeccccc---------chhHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceee-CCCCCccceeEE--EccCC
Q 006476 218 VVDEEQRF---------GVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS-TPPPERLPIKTH--LSAFS 285 (643)
Q Consensus 218 ViDEah~~---------g~~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~-~~~~~~~~v~~~--~~~~~ 285 (643)
-|||+|+. .++....+++..+++.++++|||....++..+...+.--..+. ....+|...... -.+-+
T Consensus 220 aidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n 299 (695)
T KOG0353|consen 220 AIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGN 299 (695)
T ss_pred eecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCC
Confidence 99999972 2445567888889999999999987776654432221100111 111223222222 23344
Q ss_pred HHHHHHHHHHHHhc---CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccc
Q 006476 286 KEKVISAIKYELDR---GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV 362 (643)
Q Consensus 286 ~~~~~~~i~~~l~~---~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~ 362 (643)
.+...+.+.+.+.. |..-+++|-+.++++.++..|+.. |+....+|+.|.+.++.-+-+.|..|++.|+|||-.+
T Consensus 300 ~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~--gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvaf 377 (695)
T KOG0353|consen 300 EDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH--GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAF 377 (695)
T ss_pred hHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhc--CccccccccccCccccccccccccccceEEEEEEeee
Confidence 56666666666653 345688999999999999999998 9999999999999999999999999999999999999
Q ss_pred cccccccCCCEEEEecCCCCCHHHHHH-------------------------------------------HHhccCCCCC
Q 006476 363 ESGLDIQNANTIIVQDVQQFGLAQLYQ-------------------------------------------LRGRVGRADK 399 (643)
Q Consensus 363 ~~GiDip~v~~VI~~d~p~~s~~~~~Q-------------------------------------------r~GR~GR~g~ 399 (643)
+.|||-|+++.||+...|. |+..||| -.||+||.+.
T Consensus 378 gmgidkpdvrfvihhsl~k-sienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~ 456 (695)
T KOG0353|consen 378 GMGIDKPDVRFVIHHSLPK-SIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDM 456 (695)
T ss_pred cccCCCCCeeEEEecccch-hHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCC
Confidence 9999999999999999998 9999999 7899999999
Q ss_pred ceEEEEEecCCCC
Q 006476 400 EAHAYLFYPDKSL 412 (643)
Q Consensus 400 ~g~a~~l~~~~~~ 412 (643)
++.|+++|.-.++
T Consensus 457 ~a~cilyy~~~di 469 (695)
T KOG0353|consen 457 KADCILYYGFADI 469 (695)
T ss_pred cccEEEEechHHH
Confidence 9999999875544
No 94
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=5.7e-27 Score=254.62 Aligned_cols=384 Identities=16% Similarity=0.187 Sum_probs=270.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHH------HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVV------SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEE 185 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~------~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~ 185 (643)
--+||||.||||||++.-..++.+- .++.-+-|..|+|..|..+++++...++.+ +-+|++..++.+...
T Consensus 272 ~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~-~~eVsYqIRfd~ti~--- 347 (1172)
T KOG0926|consen 272 PVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVL-GSEVSYQIRFDGTIG--- 347 (1172)
T ss_pred CeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccC-ccceeEEEEeccccC---
Confidence 4578999999999999665555541 224578899999999999999999889886 689999888654322
Q ss_pred HHHHHhcCCceEEEechHhhhc----ccccCccceEEeecccccchhH------HHH---HH-hc------CCCceEEEe
Q 006476 186 HLDMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRFGVKQ------KEK---IA-SF------KISVDVLTL 245 (643)
Q Consensus 186 ~~~~l~~g~~dIiI~T~~~L~~----~~~~~~l~llViDEah~~g~~~------~~~---l~-~~------~~~~~vl~l 245 (643)
....|-+.|.+.|++ ++.+..++.||+||||+-.+.. ..+ |+ ++ -...+.|.|
T Consensus 348 -------e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIM 420 (1172)
T KOG0926|consen 348 -------EDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIM 420 (1172)
T ss_pred -------CCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEE
Confidence 347899999998864 6678999999999999732111 111 11 11 136789999
Q ss_pred ccCCChHhHHHHHhcC-CCcceeeCCCCCccceeEEEccCCHH-HHHHHHHHHHh-----cCCeEEEEecCccChHHHHH
Q 006476 246 SATPIPRTLYLALTGF-RDASLISTPPPERLPIKTHLSAFSKE-KVISAIKYELD-----RGGQVFYVLPRIKGLEEPMD 318 (643)
Q Consensus 246 SATp~~~~~~~~~~~~-~~~~~i~~~~~~~~~v~~~~~~~~~~-~~~~~i~~~l~-----~~~qvlvf~~~~~~~e~l~~ 318 (643)
|||..-.........+ .-++++.+ +...+|+..++....+. -+.++.++.+. ..|-++||+....+++.+++
T Consensus 421 SATLRVsDFtenk~LFpi~pPlikV-dARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~ 499 (1172)
T KOG0926|consen 421 SATLRVSDFTENKRLFPIPPPLIKV-DARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCE 499 (1172)
T ss_pred eeeEEecccccCceecCCCCceeee-ecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHH
Confidence 9997433221111111 12223332 34567888887665433 34445554432 34789999999999999999
Q ss_pred HHHhhCCC------------------------------------------------------------------------
Q 006476 319 FLQQAFPG------------------------------------------------------------------------ 326 (643)
Q Consensus 319 ~L~~~~p~------------------------------------------------------------------------ 326 (643)
.|++.+|.
T Consensus 500 kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~n 579 (1172)
T KOG0926|consen 500 KLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVN 579 (1172)
T ss_pred HHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhcccccccccc
Confidence 99877551
Q ss_pred -------------------------CcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCC-
Q 006476 327 -------------------------VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ- 380 (643)
Q Consensus 327 -------------------------~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p- 380 (643)
..|.++++=++...+.+++..-..|..=++|||+++++.+.||++.+||+.+..
T Consensus 580 ge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K 659 (1172)
T KOG0926|consen 580 GEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVK 659 (1172)
T ss_pred CCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchh
Confidence 026667777888888889888889999999999999999999999999975432
Q ss_pred ----------------CCCHHHHHHHHhccCCCCCceEEEEEecCCCCCcHHHHHHHHHHHHHhhcccchhhhhhhcccc
Q 006476 381 ----------------QFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIR 444 (643)
Q Consensus 381 ----------------~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~ir 444 (643)
+.|-++--||+|||||.| .|+||.+|+..-+.+....-.++.|... -..++.+.|+.|.|-
T Consensus 660 ~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAVf~~~Fe~fS~PEIlk~--Pve~lvLqMKsMnI~ 736 (1172)
T KOG0926|consen 660 ERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAVFSNDFEEFSLPEILKK--PVESLVLQMKSMNID 736 (1172)
T ss_pred hhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHHhhcchhhhccHHHhhC--cHHHHHHHHHhcCcc
Confidence 123455679999999997 7999999987655433333344444332 124778888888665
Q ss_pred cCCCccCccccCCccchhhhhHHHHHHHHHhhhcCccccccCCcceeEeeccCCCCCccccCCCCCchHHH
Q 006476 445 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMV 515 (643)
Q Consensus 445 g~g~~lg~~q~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 515 (643)
++..+.....++...++-..+.|. ++.+++.+.. .|++|..|+-+|+.|..+++++-+...-..-|
T Consensus 737 ---kVvnFPFPtpPd~~~L~~Aer~L~-~LgALd~~g~-lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy 802 (1172)
T KOG0926|consen 737 ---KVVNFPFPTPPDRSALEKAERRLK-ALGALDSNGG-LTKLGKAMSLFPLSPRFSKMLATSDQHNLLPY 802 (1172)
T ss_pred ---ceecCCCCCCccHHHHHHHHHHHH-HhccccccCC-cccccchhcccccChhHHHHHHHHHhhcchhH
Confidence 444456666666666666666663 6777776554 57899999999999999998877655543333
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=4.3e-25 Score=250.88 Aligned_cols=307 Identities=19% Similarity=0.206 Sum_probs=217.5
Q ss_pred HHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHH
Q 006476 81 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 160 (643)
Q Consensus 81 ~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~ 160 (643)
.-.......|++.|.-+--.+. ...|..+.||+|||++|.+|++-....|++|.|++||..||.|+++.+.
T Consensus 73 a~~R~lg~~~~dvQlig~l~L~---------~G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~ 143 (830)
T PRK12904 73 ASKRVLGMRHFDVQLIGGMVLH---------EGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMG 143 (830)
T ss_pred HHHHHhCCCCCccHHHhhHHhc---------CCchhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHH
Confidence 3445667899999988764432 2259999999999999999997655678899999999999999999999
Q ss_pred HHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhh-hc----c-------cccCccceEEeeccccc---
Q 006476 161 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-GS----R-------VVYNNLGLLVVDEEQRF--- 225 (643)
Q Consensus 161 ~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L-~~----~-------~~~~~l~llViDEah~~--- 225 (643)
..+..+ |++++++.++.+..++...+ .+||++|||+.| .+ . ...+.+.++||||+|.+
T Consensus 144 ~l~~~L-Glsv~~i~~~~~~~er~~~y------~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLID 216 (830)
T PRK12904 144 PLYEFL-GLSVGVILSGMSPEERREAY------AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILID 216 (830)
T ss_pred HHHhhc-CCeEEEEcCCCCHHHHHHhc------CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheec
Confidence 866544 89999999988887766654 289999999988 32 1 12467889999999952
Q ss_pred ---------ch--------hH-HHHHHhcCC-------------------------------------------------
Q 006476 226 ---------GV--------KQ-KEKIASFKI------------------------------------------------- 238 (643)
Q Consensus 226 ---------g~--------~~-~~~l~~~~~------------------------------------------------- 238 (643)
|. .. ......+..
T Consensus 217 eArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~ 296 (830)
T PRK12904 217 EARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALR 296 (830)
T ss_pred cCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHH
Confidence 00 00 000010000
Q ss_pred -------C-------------------------------------------------------------ceEEEeccCCC
Q 006476 239 -------S-------------------------------------------------------------VDVLTLSATPI 250 (643)
Q Consensus 239 -------~-------------------------------------------------------------~~vl~lSATp~ 250 (643)
+ .++.+||+|..
T Consensus 297 A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~ 376 (830)
T PRK12904 297 AHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTAD 376 (830)
T ss_pred HHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcH
Confidence 0 12334555543
Q ss_pred hHhHHHHHhcCCCcceeeCCCCCc---cceeEEEccCCH---HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC
Q 006476 251 PRTLYLALTGFRDASLISTPPPER---LPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 324 (643)
Q Consensus 251 ~~~~~~~~~~~~~~~~i~~~~~~~---~~v~~~~~~~~~---~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~ 324 (643)
.... .+....+..++.+|+... ......+..... ..+.+.+.+....+.++||||++++.++.+++.|...
T Consensus 377 te~~--E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~- 453 (830)
T PRK12904 377 TEAE--EFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKA- 453 (830)
T ss_pred HHHH--HHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC-
Confidence 2211 122223344444444321 111112222211 2234444444466789999999999999999999998
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCC--------------------------------
Q 006476 325 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN-------------------------------- 372 (643)
Q Consensus 325 p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~-------------------------------- 372 (643)
++++..+||+ +.+|+..+.+|+.+...|+|||++++||+||+ ..
T Consensus 454 -gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~-LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (830)
T PRK12904 454 -GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIK-LGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEE 529 (830)
T ss_pred -CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCcc-CCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhh
Confidence 8999999996 78999999999999999999999999999998 33
Q ss_pred -------EEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 373 -------TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 373 -------~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
+||-...+. |..--.|.+||+||.|.+|.+-+|++-++
T Consensus 530 v~~~GGLhVigTerhe-srRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 530 VLEAGGLHVIGTERHE-SRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred HHHcCCCEEEecccCc-hHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 566655555 56666899999999999999999998554
No 96
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=2.9e-26 Score=258.75 Aligned_cols=305 Identities=20% Similarity=0.241 Sum_probs=216.7
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC-----------CeEEEEeccHHHHHHHHH
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-----------KQAMVLAPTIVLAKQHFD 157 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g-----------~~vlil~Pt~~La~Q~~~ 157 (643)
.+.++|.+..+..+. ...++++|||||+|||.++++-+++.+.++ .++.+++|+++|++.+..
T Consensus 309 sLNrIQS~v~daAl~------~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vg 382 (1674)
T KOG0951|consen 309 SLNRIQSKVYDAALR------GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVG 382 (1674)
T ss_pred hhhHHHHHHHHHHhc------CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHH
Confidence 689999999888875 146899999999999999999999987653 379999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhh----c--ccc-cCccceEEeecccccch---
Q 006476 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG----S--RVV-YNNLGLLVVDEEQRFGV--- 227 (643)
Q Consensus 158 ~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~----~--~~~-~~~l~llViDEah~~g~--- 227 (643)
.|.+++..+ |++|.-++|+.+... .++ ...+|+||||+..- + +.. .+-++++||||.|....
T Consensus 383 sfSkRla~~-GI~V~ElTgD~~l~~--~qi-----eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRG 454 (1674)
T KOG0951|consen 383 SFSKRLAPL-GITVLELTGDSQLGK--EQI-----EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRG 454 (1674)
T ss_pred HHHhhcccc-CcEEEEecccccchh--hhh-----hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccc
Confidence 999999999 899999999654322 122 23789999998651 1 112 23578999999997622
Q ss_pred -hH-------HHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCC-CCccceeEEEccCC---H--------H
Q 006476 228 -KQ-------KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPP-PERLPIKTHLSAFS---K--------E 287 (643)
Q Consensus 228 -~~-------~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~-~~~~~v~~~~~~~~---~--------~ 287 (643)
.. ......-..+.+.+++|||.+.-..--.........++...+ -...|+.+.+.... + +
T Consensus 455 pvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe 534 (1674)
T KOG0951|consen 455 PVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNE 534 (1674)
T ss_pred hHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHH
Confidence 11 111222245789999999986544322222222222222222 22334444433221 1 1
Q ss_pred HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC-----------------------------C------CCcEEEE
Q 006476 288 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF-----------------------------P------GVDIAIA 332 (643)
Q Consensus 288 ~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~-----------------------------p------~~~v~~~ 332 (643)
...+.+.....+ +||+||+.++++.-+.|+.++..+ | .++++++
T Consensus 535 ~~yeKVm~~agk-~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIH 613 (1674)
T KOG0951|consen 535 ACYEKVLEHAGK-NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIH 613 (1674)
T ss_pred HHHHHHHHhCCC-CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceee
Confidence 233334433333 899999999998888888876221 0 2479999
Q ss_pred eCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCC----------CHHHHHHHHhccCCCC--Cc
Q 006476 333 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF----------GLAQLYQLRGRVGRAD--KE 400 (643)
Q Consensus 333 hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~----------s~~~~~Qr~GR~GR~g--~~ 400 (643)
|+||+..+|+.+.+.|++|.++|+|+|-.+++|+|+| +++||+-+..-| ++.+..||.||+||.+ +.
T Consensus 614 hAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~ 692 (1674)
T KOG0951|consen 614 HAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTC 692 (1674)
T ss_pred ccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCC-cceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcC
Confidence 9999999999999999999999999999999999999 888887443322 4668899999999994 44
Q ss_pred eEEEEEecC
Q 006476 401 AHAYLFYPD 409 (643)
Q Consensus 401 g~a~~l~~~ 409 (643)
|..++....
T Consensus 693 gegiiit~~ 701 (1674)
T KOG0951|consen 693 GEGIIITDH 701 (1674)
T ss_pred CceeeccCc
Confidence 555554433
No 97
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=6.1e-25 Score=249.77 Aligned_cols=318 Identities=19% Similarity=0.199 Sum_probs=214.9
Q ss_pred hcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHh
Q 006476 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERF 163 (643)
Q Consensus 84 ~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~ 163 (643)
......|.+.|..+--.+. ...|..++||+|||++|.+|++.....|+.|+|++||++||.|.++.+...+
T Consensus 77 R~lg~~~ydvQliGg~~Lh---------~G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 77 RTLGLRHFDVQLIGGMVLH---------EGNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred HHcCCCcchHHHhhhhhhc---------cCccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 4566788888887654332 2358999999999999999999877889999999999999999999999855
Q ss_pred cCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhh-h----ccccc-------CccceEEeeccccc------
Q 006476 164 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-G----SRVVY-------NNLGLLVVDEEQRF------ 225 (643)
Q Consensus 164 ~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L-~----~~~~~-------~~l~llViDEah~~------ 225 (643)
.+.|++|+++.|+.+..++...+ .+||+||||+.| . +.+.+ +.+.++||||+|.+
T Consensus 148 -~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeAr 220 (896)
T PRK13104 148 -EFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEAR 220 (896)
T ss_pred -cccCceEEEEeCCCCHHHHHHHh------CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccC
Confidence 44589999999988777665443 489999999987 3 22222 57899999999963
Q ss_pred ------ch--------h-HHHHHHhcCC--------------CceEEEeccC----------------------------
Q 006476 226 ------GV--------K-QKEKIASFKI--------------SVDVLTLSAT---------------------------- 248 (643)
Q Consensus 226 ------g~--------~-~~~~l~~~~~--------------~~~vl~lSAT---------------------------- 248 (643)
|. . ....+..+.. ..+.+.+|-.
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~ 300 (896)
T PRK13104 221 TPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIM 300 (896)
T ss_pred CceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhh
Confidence 10 0 0011111111 1112222222
Q ss_pred --------------------------------------------------------------------------------
Q 006476 249 -------------------------------------------------------------------------------- 248 (643)
Q Consensus 249 -------------------------------------------------------------------------------- 248 (643)
T Consensus 301 ~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~ 380 (896)
T PRK13104 301 LMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYN 380 (896)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcc
Confidence
Q ss_pred --------CChHhHHHHHhcCCCcceeeCCCCC---ccceeEEEccCCH---HHHHHHHHHHHhcCCeEEEEecCccChH
Q 006476 249 --------PIPRTLYLALTGFRDASLISTPPPE---RLPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLPRIKGLE 314 (643)
Q Consensus 249 --------p~~~~~~~~~~~~~~~~~i~~~~~~---~~~v~~~~~~~~~---~~~~~~i~~~l~~~~qvlvf~~~~~~~e 314 (643)
....... +..+.+..++.+|+.. |......+..... ..+.+.+......|.++||||++++.++
T Consensus 381 kLsGMTGTa~te~~E--f~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE 458 (896)
T PRK13104 381 KLSGMTGTADTEAYE--FQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASE 458 (896)
T ss_pred hhccCCCCChhHHHH--HHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence 1000000 0001112222222211 1111111211111 1244445555678899999999999999
Q ss_pred HHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCC-----------------------
Q 006476 315 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA----------------------- 371 (643)
Q Consensus 315 ~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v----------------------- 371 (643)
.++..|... ++++.++||++.+.+++.+.+.|+.|. |+|||++++||+||.=-
T Consensus 459 ~ls~~L~~~--gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~ 534 (896)
T PRK13104 459 FLSQLLKKE--NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVK 534 (896)
T ss_pred HHHHHHHHc--CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHH
Confidence 999999998 999999999999999999999999995 99999999999998711
Q ss_pred ---------------CEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC-CCcHHHHHHHHHH
Q 006476 372 ---------------NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS-LLSDQALERLAAL 424 (643)
Q Consensus 372 ---------------~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~-~~~~~~~~rl~~i 424 (643)
=+||-...+. |..-=.|.+||+||.|.+|.+-+|++-++ ++.....+++..+
T Consensus 535 ~~~~~~~~~V~~~GGL~VIgTerhe-srRID~QLrGRaGRQGDPGss~f~lSleD~l~~~f~~~~~~~~ 602 (896)
T PRK13104 535 KEWQKRHDEVIAAGGLRIIGSERHE-SRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASERVASM 602 (896)
T ss_pred HHhhhhhhHHHHcCCCEEEeeccCc-hHHHHHHhccccccCCCCCceEEEEEcCcHHHHHhChHHHHHH
Confidence 1455444443 45555799999999999999999988543 3333333444333
No 98
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=5e-25 Score=249.38 Aligned_cols=309 Identities=20% Similarity=0.217 Sum_probs=220.3
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHH
Q 006476 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 159 (643)
Q Consensus 80 ~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~ 159 (643)
+.........|++.|.-+--.+. ...|....||+|||+++.+|++.....|++|.|++||..||.|+++.+
T Consensus 71 Ea~~R~~g~~~~dvQlig~l~l~---------~G~iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~ 141 (796)
T PRK12906 71 EGAKRVLGLRPFDVQIIGGIVLH---------EGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEM 141 (796)
T ss_pred HHHHHHhCCCCchhHHHHHHHHh---------cCCcccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHH
Confidence 44556778899999998754432 224999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhh-----hcccc-------cCccceEEeeccccc--
Q 006476 160 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRVV-------YNNLGLLVVDEEQRF-- 225 (643)
Q Consensus 160 ~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L-----~~~~~-------~~~l~llViDEah~~-- 225 (643)
...|..+ |++|+++.+..+..+++..+ .+||++||..-+ .+.+. .+.+.+.||||+|.+
T Consensus 142 ~~~~~~L-Gl~vg~i~~~~~~~~r~~~y------~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLi 214 (796)
T PRK12906 142 GELYRWL-GLTVGLNLNSMSPDEKRAAY------NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILI 214 (796)
T ss_pred HHHHHhc-CCeEEEeCCCCCHHHHHHHh------cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheee
Confidence 9877766 89999999988887776655 389999998644 23221 246788999999841
Q ss_pred ----------ch--------hH-HHHHHhcCC------------------------------------------------
Q 006476 226 ----------GV--------KQ-KEKIASFKI------------------------------------------------ 238 (643)
Q Consensus 226 ----------g~--------~~-~~~l~~~~~------------------------------------------------ 238 (643)
|. .. ......+..
T Consensus 215 DeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~ 294 (796)
T PRK12906 215 DEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSEN 294 (796)
T ss_pred ccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchh
Confidence 00 00 000000000
Q ss_pred -------------------C------------------------------------------------------------
Q 006476 239 -------------------S------------------------------------------------------------ 239 (643)
Q Consensus 239 -------------------~------------------------------------------------------------ 239 (643)
+
T Consensus 295 ~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~ 374 (796)
T PRK12906 295 TALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRM 374 (796)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHh
Confidence 0
Q ss_pred -ceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCc---cceeEEEccCCH---HHHHHHHHHHHhcCCeEEEEecCccC
Q 006476 240 -VDVLTLSATPIPRTLYLALTGFRDASLISTPPPER---LPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLPRIKG 312 (643)
Q Consensus 240 -~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~---~~v~~~~~~~~~---~~~~~~i~~~l~~~~qvlvf~~~~~~ 312 (643)
.++-+||+|....... +....+..++.+|+... ......+..... ..+.+.+......+.++||||+++..
T Consensus 375 Y~kl~GmTGTa~~e~~E--f~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~ 452 (796)
T PRK12906 375 YKKLSGMTGTAKTEEEE--FREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIES 452 (796)
T ss_pred cchhhccCCCCHHHHHH--HHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 1122233332111111 11112333344443221 111111111111 12344444444577899999999999
Q ss_pred hHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccccccccc---CCC-----EEEEecCCCCCH
Q 006476 313 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ---NAN-----TIIVQDVQQFGL 384 (643)
Q Consensus 313 ~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip---~v~-----~VI~~d~p~~s~ 384 (643)
++.++..|.+. ++++..+||++.+.+++.+...++.|. |+|||++++||+||+ +|. +||+++.|. +.
T Consensus 453 se~ls~~L~~~--gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pe-s~ 527 (796)
T PRK12906 453 SERLSHLLDEA--GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHE-SR 527 (796)
T ss_pred HHHHHHHHHHC--CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCC-cH
Confidence 99999999998 899999999998777777777777666 999999999999994 889 999999998 99
Q ss_pred HHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 385 AQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 385 ~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
..+.|++||+||.|.+|.+.++++.++
T Consensus 528 ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 528 RIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred HHHHHHhhhhccCCCCcceEEEEeccc
Confidence 999999999999999999999998764
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=2.1e-25 Score=265.14 Aligned_cols=296 Identities=19% Similarity=0.242 Sum_probs=193.9
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC--CCeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~--g~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
+.++++|.+||..+.+.+.. ..++.|++++||||||.+++..+...+.. .+++|||+|+++|+.|+.+.|.. +..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~--g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~-~~~ 488 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVE--GQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKD-TKI 488 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHh--ccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHh-ccc
Confidence 57999999999999876632 23578999999999999877666555443 47999999999999999999986 322
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc----------cccCccceEEeecccccc---------
Q 006476 166 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR----------VVYNNLGLLVVDEEQRFG--------- 226 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~----------~~~~~l~llViDEah~~g--------- 226 (643)
..+..+..+.+ ... .-........+|+|+|.+.+.+. ..+..+++||+|||||-.
T Consensus 489 ~~~~~~~~i~~---i~~---L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 489 EGDQTFASIYD---IKG---LEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred ccccchhhhhc---hhh---hhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 11111111111 010 00111233478999999877432 235678899999999942
Q ss_pred ----------hhHHHHHHhcCCCceEEEeccCCChHhHHHHHh---------cCCCcceeeCCCCCccceeEE-------
Q 006476 227 ----------VKQKEKIASFKISVDVLTLSATPIPRTLYLALT---------GFRDASLISTPPPERLPIKTH------- 280 (643)
Q Consensus 227 ----------~~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~---------~~~~~~~i~~~~~~~~~v~~~------- 280 (643)
+.....+... .+...|+|||||...+...+-. .+.+..++...|+- .+.+.
T Consensus 563 ~~~~~~~~~~~~~yr~iL~y-FdA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~--~i~t~~~~~gi~ 639 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDY-FDAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPI--RIETRLSQEGIH 639 (1123)
T ss_pred hhccchhhhHHHHHHHHHhh-cCccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCE--EEEEEecccccc
Confidence 1122222222 2467899999997655432210 00111111000000 00000
Q ss_pred ----------------E--ccCCH------H-------------HHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHH
Q 006476 281 ----------------L--SAFSK------E-------------KVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQ 321 (643)
Q Consensus 281 ----------------~--~~~~~------~-------------~~~~~i~~~l~--~~~qvlvf~~~~~~~e~l~~~L~ 321 (643)
+ ..... . .+...+.+.+. .+++++|||.++++++.+++.|.
T Consensus 640 ~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~ 719 (1123)
T PRK11448 640 FEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLK 719 (1123)
T ss_pred ccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHH
Confidence 0 00000 0 01111222222 23799999999999999999887
Q ss_pred hhC----CCC---cEEEEeCCCCHHHHHHHHHHHhcCCc-eEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhc
Q 006476 322 QAF----PGV---DIAIAHGQQYSRQLEETMEKFAQGAI-KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGR 393 (643)
Q Consensus 322 ~~~----p~~---~v~~~hg~~~~~~r~~v~~~F~~g~~-~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR 393 (643)
+.+ |+. .+..+||+++ +++.++++|+++.. +|+|+++++.+|+|+|.+.+||.++++. |...|.||+||
T Consensus 720 ~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvk-S~~lf~QmIGR 796 (1123)
T PRK11448 720 EAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVR-SRILYEQMLGR 796 (1123)
T ss_pred HHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCC-CHHHHHHHHhh
Confidence 653 332 5667899985 46789999999887 6999999999999999999999999997 99999999999
Q ss_pred cCCCC
Q 006476 394 VGRAD 398 (643)
Q Consensus 394 ~GR~g 398 (643)
+.|..
T Consensus 797 gtR~~ 801 (1123)
T PRK11448 797 ATRLC 801 (1123)
T ss_pred hccCC
Confidence 99973
No 100
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=9.9e-25 Score=241.40 Aligned_cols=306 Identities=25% Similarity=0.334 Sum_probs=224.1
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~ 157 (643)
+..+....+||+|-+.|++||..+.+ +..+++.|+|.+|||++|-.++..+...+.++++.+|-++|.+|.++
T Consensus 286 lVpe~a~~~pFelD~FQk~Ai~~ler-------g~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfR 358 (1248)
T KOG0947|consen 286 LVPEMALIYPFELDTFQKEAIYHLER-------GDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFR 358 (1248)
T ss_pred hchhHHhhCCCCccHHHHHHHHHHHc-------CCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHH
Confidence 34566778999999999999988854 67899999999999999999998888889999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccc-----ccCccceEEeeccccc-----ch
Q 006476 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQRF-----GV 227 (643)
Q Consensus 158 ~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~-----~~~~l~llViDEah~~-----g~ 227 (643)
.|++.|+. +++++|+.... -.+.++|.|-+.|...+ ..+++.+||+||+|-. |+
T Consensus 359 DFk~tF~D-----vgLlTGDvqin-----------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGv 422 (1248)
T KOG0947|consen 359 DFKETFGD-----VGLLTGDVQIN-----------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGV 422 (1248)
T ss_pred HHHHhccc-----cceeecceeeC-----------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccc
Confidence 99998765 34788854332 34689999988876533 2478999999999976 55
Q ss_pred hHHHHHHhcCCCceEEEeccCCChHhHHHH-HhcC---CCcceeeCCCCCccceeEEEccC-------------------
Q 006476 228 KQKEKIASFKISVDVLTLSATPIPRTLYLA-LTGF---RDASLISTPPPERLPIKTHLSAF------------------- 284 (643)
Q Consensus 228 ~~~~~l~~~~~~~~vl~lSATp~~~~~~~~-~~~~---~~~~~i~~~~~~~~~v~~~~~~~------------------- 284 (643)
-..+.+-.++..+++|++|||. |++..++ |.|- +...++++. ....|...++...
T Consensus 423 VWEEViIMlP~HV~~IlLSATV-PN~~EFA~WIGRtK~K~IyViST~-kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~ 500 (1248)
T KOG0947|consen 423 VWEEVIIMLPRHVNFILLSATV-PNTLEFADWIGRTKQKTIYVISTS-KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIK 500 (1248)
T ss_pred cceeeeeeccccceEEEEeccC-CChHHHHHHhhhccCceEEEEecC-CCccceEEEEEeccceehhhcccchhhhhcch
Confidence 5556677889999999999996 4444332 3332 222233321 1111211111000
Q ss_pred ------------------------------------------------CH--HHHHHHHHHHHhcC--CeEEEEecCccC
Q 006476 285 ------------------------------------------------SK--EKVISAIKYELDRG--GQVFYVLPRIKG 312 (643)
Q Consensus 285 ------------------------------------------------~~--~~~~~~i~~~l~~~--~qvlvf~~~~~~ 312 (643)
.. ..+.+. ...+... -+++|||=+++.
T Consensus 501 ~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~l-in~L~k~~lLP~VvFvFSkkr 579 (1248)
T KOG0947|consen 501 DAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDL-INHLRKKNLLPVVVFVFSKKR 579 (1248)
T ss_pred hhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHH-HHHHhhcccCceEEEEEcccc
Confidence 00 001111 1122211 368999999999
Q ss_pred hHHHHHHHHhh---------------------C-------CC---------CcEEEEeCCCCHHHHHHHHHHHhcCCceE
Q 006476 313 LEEPMDFLQQA---------------------F-------PG---------VDIAIAHGQQYSRQLEETMEKFAQGAIKI 355 (643)
Q Consensus 313 ~e~l~~~L~~~---------------------~-------p~---------~~v~~~hg~~~~~~r~~v~~~F~~g~~~I 355 (643)
|++.++.|... + |. -+++++||++-+--++-|..-|..|-++|
T Consensus 580 Cde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKV 659 (1248)
T KOG0947|consen 580 CDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKV 659 (1248)
T ss_pred HHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEE
Confidence 99999998532 0 11 26899999999999999999999999999
Q ss_pred EEecccccccccccCCCEEEEecCCC--------CCHHHHHHHHhccCCCC--CceEEEEEecCC
Q 006476 356 LICTNIVESGLDIQNANTIIVQDVQQ--------FGLAQLYQLRGRVGRAD--KEAHAYLFYPDK 410 (643)
Q Consensus 356 LVaT~i~~~GiDip~v~~VI~~d~p~--------~s~~~~~Qr~GR~GR~g--~~g~a~~l~~~~ 410 (643)
|+||.++++|+|.| +++||.....+ .++-+|+|++|||||.| ..|+++++....
T Consensus 660 LFATETFAMGVNMP-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 660 LFATETFAMGVNMP-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred EeehhhhhhhcCCC-ceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 99999999999999 77777533221 24679999999999996 578988887765
No 101
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=4.9e-25 Score=253.10 Aligned_cols=311 Identities=23% Similarity=0.287 Sum_probs=225.5
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHH
Q 006476 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 159 (643)
Q Consensus 80 ~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~ 159 (643)
..+...++|.|-++|++|+..+.+ +..+++|||||+|||.++..++..++.+|.++++++|.++|.+|.|.+|
T Consensus 110 ~~~~~~~~F~LD~fQ~~a~~~Ler-------~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl 182 (1041)
T COG4581 110 APPAREYPFELDPFQQEAIAILER-------GESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDL 182 (1041)
T ss_pred CcHHHhCCCCcCHHHHHHHHHHhC-------CCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHH
Confidence 456677999999999999988854 5789999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccc-----ccCccceEEeecccccch-----hH
Q 006476 160 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQRFGV-----KQ 229 (643)
Q Consensus 160 ~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~-----~~~~l~llViDEah~~g~-----~~ 229 (643)
..+|+.. --.+++++|+.+.. +.+.++|.|-+.|.+.+ ...++..||+||+|.++. -.
T Consensus 183 ~~~fgdv-~~~vGL~TGDv~IN-----------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VW 250 (1041)
T COG4581 183 LAKFGDV-ADMVGLMTGDVSIN-----------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVW 250 (1041)
T ss_pred HHHhhhh-hhhccceecceeeC-----------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhH
Confidence 9998754 23568888866543 56788898888776533 357889999999998744 34
Q ss_pred HHHHHhcCCCceEEEeccCCChHhH-HHHHhcC--CCcceeeCCCCCccceeEEEccC----------CH---HH---HH
Q 006476 230 KEKIASFKISVDVLTLSATPIPRTL-YLALTGF--RDASLISTPPPERLPIKTHLSAF----------SK---EK---VI 290 (643)
Q Consensus 230 ~~~l~~~~~~~~vl~lSATp~~~~~-~~~~~~~--~~~~~i~~~~~~~~~v~~~~~~~----------~~---~~---~~ 290 (643)
.+.+..++..+++++||||.+.... ....... .+..++.+ .....|...++... .. .. ..
T Consensus 251 EE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t-~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~ 329 (1041)
T COG4581 251 EEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVST-EHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSAN 329 (1041)
T ss_pred HHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEee-cCCCCCeEEEEecCCceeeeecccccchhhcchhhh
Confidence 5667888889999999999643322 2222222 22333332 12222333222111 00 00 00
Q ss_pred HH--------------------------------------HHHHH--hcCCeEEEEecCccChHHHHHHHHhh-------
Q 006476 291 SA--------------------------------------IKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQA------- 323 (643)
Q Consensus 291 ~~--------------------------------------i~~~l--~~~~qvlvf~~~~~~~e~l~~~L~~~------- 323 (643)
.. +...+ .+.-.+++|+=++..|+..+..+...
T Consensus 330 ~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~ 409 (1041)
T COG4581 330 RSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEE 409 (1041)
T ss_pred hhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCc
Confidence 00 11111 12246788888887777777666311
Q ss_pred ----------------------CC-C---------CcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCC
Q 006476 324 ----------------------FP-G---------VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 371 (643)
Q Consensus 324 ----------------------~p-~---------~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v 371 (643)
.| + -.++++|++|=+..++.+...|..|-++|++||.+++.|+|+| +
T Consensus 410 ~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP-a 488 (1041)
T COG4581 410 KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP-A 488 (1041)
T ss_pred HHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc-c
Confidence 12 1 1467899999999999999999999999999999999999999 7
Q ss_pred CEEEEecCCCC--------CHHHHHHHHhccCCCC--CceEEEEEecCCC
Q 006476 372 NTIIVQDVQQF--------GLAQLYQLRGRVGRAD--KEAHAYLFYPDKS 411 (643)
Q Consensus 372 ~~VI~~d~p~~--------s~~~~~Qr~GR~GR~g--~~g~a~~l~~~~~ 411 (643)
++|+.....+| +..+|.|+.|||||.| ..|.+++.-++..
T Consensus 489 rtvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~ 538 (1041)
T COG4581 489 RTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFE 538 (1041)
T ss_pred cceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCC
Confidence 88876544332 4689999999999996 4588888755544
No 102
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.93 E-value=2.9e-25 Score=227.42 Aligned_cols=262 Identities=21% Similarity=0.259 Sum_probs=179.6
Q ss_pred EEEEeccHHHHHHHHHHHHHHhc---CCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCc
Q 006476 142 AMVLAPTIVLAKQHFDVVSERFS---KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNN 213 (643)
Q Consensus 142 vlil~Pt~~La~Q~~~~~~~~~~---~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~ 213 (643)
++|+-|.++||.|.++.+.+ |. ..|.++-.++.|+. ..+++...+++| .+|+||||+++.+. +.+..
T Consensus 289 avivepsrelaEqt~N~i~~-Fk~h~~np~~r~lLmiggv---~~r~Q~~ql~~g-~~ivvGtpgRl~~~is~g~~~lt~ 363 (725)
T KOG0349|consen 289 AVIVEPSRELAEQTHNQIEE-FKMHTSNPEVRSLLMIGGV---LKRTQCKQLKDG-THIVVGTPGRLLQPISKGLVTLTH 363 (725)
T ss_pred eeEecCcHHHHHHHHhhHHH-HHhhcCChhhhhhhhhhhH---HhHHHHHHhhcC-ceeeecCchhhhhhhhccceeeee
Confidence 79999999999999995544 32 23556655666643 334466777788 89999999999764 34677
Q ss_pred cceEEeecccccch-hHHHHHH-------hc---CCCceEEEeccCCCh-HhHHHHHhcCCCcceeeC------------
Q 006476 214 LGLLVVDEEQRFGV-KQKEKIA-------SF---KISVDVLTLSATPIP-RTLYLALTGFRDASLIST------------ 269 (643)
Q Consensus 214 l~llViDEah~~g~-~~~~~l~-------~~---~~~~~vl~lSATp~~-~~~~~~~~~~~~~~~i~~------------ 269 (643)
+.++|+||++-+.. ...+.|- .+ ....|.+.+|||... ++..+....+.-+..+..
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 89999999998622 1122222 11 245788999999521 111111111111111111
Q ss_pred ------CCCC-------------ccceeEEE-----ccCCHHHHHHHHHH-----HHh--cCCeEEEEecCccChHHHHH
Q 006476 270 ------PPPE-------------RLPIKTHL-----SAFSKEKVISAIKY-----ELD--RGGQVFYVLPRIKGLEEPMD 318 (643)
Q Consensus 270 ------~~~~-------------~~~v~~~~-----~~~~~~~~~~~i~~-----~l~--~~~qvlvf~~~~~~~e~l~~ 318 (643)
|..+ ..+-+.++ ++.+.......+.. .+. .-.+.++||.++.+|+.+.+
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 0000 00000111 11111111111111 111 23689999999999999999
Q ss_pred HHHhhC-CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCC
Q 006476 319 FLQQAF-PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 397 (643)
Q Consensus 319 ~L~~~~-p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~ 397 (643)
++.+.. ..+.++++||+..+.+|.+-++.|+.+..+.||||++++||+||.++.++|+...|. .-..|+||+||+||+
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd-~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPD-DKTNYVHRIGRVGRA 602 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCc-ccchhhhhhhccchh
Confidence 998763 247899999999999999999999999999999999999999999999999999997 889999999999999
Q ss_pred CCceEEEEEecC
Q 006476 398 DKEAHAYLFYPD 409 (643)
Q Consensus 398 g~~g~a~~l~~~ 409 (643)
.+-|.|+.++..
T Consensus 603 ermglaislvat 614 (725)
T KOG0349|consen 603 ERMGLAISLVAT 614 (725)
T ss_pred hhcceeEEEeec
Confidence 999999998753
No 103
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=2.4e-25 Score=240.87 Aligned_cols=302 Identities=23% Similarity=0.295 Sum_probs=223.5
Q ss_pred HhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHH
Q 006476 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSER 162 (643)
Q Consensus 83 ~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~ 162 (643)
.+.+||++-|.|..||.-+- ++..+|++|-|.+|||.+|-.++...+.+..+|++..|-++|.+|.|+++.+.
T Consensus 123 Ak~YPF~LDpFQ~~aI~Cid-------r~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~E 195 (1041)
T KOG0948|consen 123 AKTYPFTLDPFQSTAIKCID-------RGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEE 195 (1041)
T ss_pred ccCCCcccCchHhhhhhhhc-------CCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHH
Confidence 46789999999999998773 36789999999999999999999999999999999999999999999999988
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccc-----ccCccceEEeeccccc-----chhHHHH
Q 006476 163 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQRF-----GVKQKEK 232 (643)
Q Consensus 163 ~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~-----~~~~l~llViDEah~~-----g~~~~~~ 232 (643)
|+. |++.+|+.+.. -.+.-+|.|.+.|...+ -.+.+.+||+||.|-| |+-..+.
T Consensus 196 F~D-----VGLMTGDVTIn-----------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEET 259 (1041)
T KOG0948|consen 196 FKD-----VGLMTGDVTIN-----------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEET 259 (1041)
T ss_pred hcc-----cceeecceeeC-----------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeee
Confidence 754 66777765543 23567888888776533 2478899999999987 4444455
Q ss_pred HHhcCCCceEEEeccCCChHhHHHH--HhcCC--CcceeeCCCCCccceeEEEcc---------------CCHH------
Q 006476 233 IASFKISVDVLTLSATPIPRTLYLA--LTGFR--DASLISTPPPERLPIKTHLSA---------------FSKE------ 287 (643)
Q Consensus 233 l~~~~~~~~vl~lSATp~~~~~~~~--~~~~~--~~~~i~~~~~~~~~v~~~~~~---------------~~~~------ 287 (643)
+--++.+++.+.+|||.+. ..+++ ...+. ...++.+ .....|.+.|+.+ +.++
T Consensus 260 IIllP~~vr~VFLSATiPN-A~qFAeWI~~ihkQPcHVVYT-dyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am 337 (1041)
T KOG0948|consen 260 IILLPDNVRFVFLSATIPN-ARQFAEWICHIHKQPCHVVYT-DYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAM 337 (1041)
T ss_pred EEeccccceEEEEeccCCC-HHHHHHHHHHHhcCCceEEee-cCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHH
Confidence 6667899999999999644 33322 22221 1222222 1122233332211 1111
Q ss_pred --------------------------------HHHHHHHHHHhcC-CeEEEEecCccChHHHHHHHHhhC----------
Q 006476 288 --------------------------------KVISAIKYELDRG-GQVFYVLPRIKGLEEPMDFLQQAF---------- 324 (643)
Q Consensus 288 --------------------------------~~~~~i~~~l~~~-~qvlvf~~~~~~~e~l~~~L~~~~---------- 324 (643)
.+...+...+.+. .+++||+=++++||..|-.+..+.
T Consensus 338 ~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V 417 (1041)
T KOG0948|consen 338 SVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELV 417 (1041)
T ss_pred HHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHH
Confidence 1233333333333 579999999999999887774331
Q ss_pred ------------------CC---------CcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEe
Q 006476 325 ------------------PG---------VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 377 (643)
Q Consensus 325 ------------------p~---------~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~ 377 (643)
|. -+++++|||+-+--++-+.--|.+|-+++|+||.+++.|+|.| +.+|+..
T Consensus 418 ~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMP-AkTVvFT 496 (1041)
T KOG0948|consen 418 ETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMP-AKTVVFT 496 (1041)
T ss_pred HHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCc-ceeEEEe
Confidence 11 2689999999999899999999999999999999999999999 8888875
Q ss_pred cCCCC--------CHHHHHHHHhccCCCC--CceEEEEEecCC
Q 006476 378 DVQQF--------GLAQLYQLRGRVGRAD--KEAHAYLFYPDK 410 (643)
Q Consensus 378 d~p~~--------s~~~~~Qr~GR~GR~g--~~g~a~~l~~~~ 410 (643)
....| |.-+|+|+.|||||.| ..|.|+++++..
T Consensus 497 ~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 497 AVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred eccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 55444 3457999999999996 569999988754
No 104
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.92 E-value=1.3e-24 Score=247.29 Aligned_cols=375 Identities=18% Similarity=0.206 Sum_probs=252.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH-HC--CCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVV-SA--GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 187 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~-~~--g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~ 187 (643)
...++|+|.||+|||++....++... .. ...+++..|+|.-|..+++++...-+..+|-.|++-.+..+...
T Consensus 188 ~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s----- 262 (924)
T KOG0920|consen 188 NQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESKRS----- 262 (924)
T ss_pred CceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecccC-----
Confidence 46799999999999999877777653 22 34789999999999999999987766666777887777444332
Q ss_pred HHHhcCCceEEEechHhhhc----ccccCccceEEeeccccc------chhHHHHHHhcCCCceEEEeccCCChHhHHHH
Q 006476 188 DMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRF------GVKQKEKIASFKISVDVLTLSATPIPRTLYLA 257 (643)
Q Consensus 188 ~~l~~g~~dIiI~T~~~L~~----~~~~~~l~llViDEah~~------g~~~~~~l~~~~~~~~vl~lSATp~~~~~~~~ 257 (643)
....+.+||.+.|++ +..+.++..||+||+|+= ..-....+...+++.++++||||..... +
T Consensus 263 -----~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~---f 334 (924)
T KOG0920|consen 263 -----RETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAEL---F 334 (924)
T ss_pred -----CceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecchHH---H
Confidence 236899999997765 345788999999999973 2233445555679999999999986433 3
Q ss_pred HhcCCCcceeeCCCCCccceeEEEc-----------------------------------cCCHHHHHHHHHHHH---hc
Q 006476 258 LTGFRDASLISTPPPERLPIKTHLS-----------------------------------AFSKEKVISAIKYEL---DR 299 (643)
Q Consensus 258 ~~~~~~~~~i~~~~~~~~~v~~~~~-----------------------------------~~~~~~~~~~i~~~l---~~ 299 (643)
..++....++.++ ...+|+.+++. ..+. .+...+...+ ..
T Consensus 335 s~YF~~~pvi~i~-grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~-~Li~~li~~I~~~~~ 412 (924)
T KOG0920|consen 335 SDYFGGCPVITIP-GRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDY-DLIEDLIEYIDEREF 412 (924)
T ss_pred HHHhCCCceEeec-CCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccH-HHHHHHHHhcccCCC
Confidence 4444455555442 22333322210 0111 1222333322 23
Q ss_pred CCeEEEEecCccChHHHHHHHHhhC---C--CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEE
Q 006476 300 GGQVFYVLPRIKGLEEPMDFLQQAF---P--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 374 (643)
Q Consensus 300 ~~qvlvf~~~~~~~e~l~~~L~~~~---p--~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~V 374 (643)
.|.+|||.|...++..+++.|.... + ..-+.++|+.|+..+++.++..-..|..+|++||++++++|.|+++-+|
T Consensus 413 ~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyV 492 (924)
T KOG0920|consen 413 EGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYV 492 (924)
T ss_pred CceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEE
Confidence 5899999999999999999997542 2 2568899999999999999999999999999999999999999999999
Q ss_pred EEec--------CCC---------CCHHHHHHHHhccCCCCCceEEEEEecCCCCCcHHHHHHHHHHHHHhhcccchhhh
Q 006476 375 IVQD--------VQQ---------FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 437 (643)
Q Consensus 375 I~~d--------~p~---------~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~~~~l~~g~~i~ 437 (643)
|+.+ +.. .+-++-.||+|||||. +.|.||.+|+............+..+.+... ....+.
T Consensus 493 IDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL--~~l~L~ 569 (924)
T KOG0920|consen 493 IDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEKLMLAYQLPEILRTPL--EELCLH 569 (924)
T ss_pred EecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhhcccccCChHHHhChH--HHhhhe
Confidence 9743 322 1345678999999998 6899999999875433222122233322110 011111
Q ss_pred hhhcccccCCCccCccccCCccchhhhhHHHHHHHHHhhhcCccccccCCcceeEeeccCCCCCccccC
Q 006476 438 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYIN 506 (643)
Q Consensus 438 ~~dl~irg~g~~lg~~q~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 506 (643)
.+=++......+|. .-.+.+...++......|. .|.+++... ..|++|...+.+|+||.+++..+-
T Consensus 570 iK~l~~~~~~~fLs-kaldpP~~~~v~~a~~~L~-~igaL~~~e-~LT~LG~~la~lPvd~~igK~ll~ 635 (924)
T KOG0920|consen 570 IKVLEQGSIKAFLS-KALDPPPADAVDLAIERLK-QIGALDESE-ELTPLGLHLASLPVDVRIGKLLLF 635 (924)
T ss_pred eeeccCCCHHHHHH-HhcCCCChHHHHHHHHHHH-HhccccCcc-cchHHHHHHHhCCCccccchhhee
Confidence 11111111111111 1223334445555666664 366666544 467899999999999999885543
No 105
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.92 E-value=4.1e-23 Score=234.16 Aligned_cols=278 Identities=16% Similarity=0.183 Sum_probs=214.7
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcC
Q 006476 114 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 193 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g 193 (643)
.+..+.+|||||++|+..+...+..|+++|||+|...|+.|+.++|+++|+. ..+..+++..+..++.+.|..+.+|
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~~lhS~l~~~~R~~~w~~~~~G 239 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGA---GDVAVLSAGLGPADRYRRWLAVLRG 239 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCC---CcEEEECCCCCHHHHHHHHHHHhCC
Confidence 4445556999999999999999999999999999999999999999998852 5689999999999999999999999
Q ss_pred CceEEEechHhhhcccccCccceEEeecccccchhH----------HHHHHhcCCCceEEEeccCCChHhHHHHHhcCCC
Q 006476 194 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQ----------KEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 263 (643)
Q Consensus 194 ~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~----------~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~ 263 (643)
+++|||||.+.++ .+++++++|||||+|.-.+++ ....+....+..+|+.||||.-+++.....|+..
T Consensus 240 ~~~IViGtRSAvF--aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~~~g~~~ 317 (665)
T PRK14873 240 QARVVVGTRSAVF--APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALVESGWAH 317 (665)
T ss_pred CCcEEEEcceeEE--eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHhcCcce
Confidence 9999999998886 578999999999999753322 1223334578999999999999998887777543
Q ss_pred cce-eeCCCCCccceeEEEcc--------------CCHHHHHHHHHHHHhcCCeEEEEecC-------------------
Q 006476 264 ASL-ISTPPPERLPIKTHLSA--------------FSKEKVISAIKYELDRGGQVFYVLPR------------------- 309 (643)
Q Consensus 264 ~~~-i~~~~~~~~~v~~~~~~--------------~~~~~~~~~i~~~l~~~~qvlvf~~~------------------- 309 (643)
... .........|....+.. .-...+.+.+.+.+++| |+++|+|+
T Consensus 318 ~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~C~~Cg~~~~C~ 396 (665)
T PRK14873 318 DLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLACARCRTPARCR 396 (665)
T ss_pred eeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeEhhhCcCeeECC
Confidence 111 11000111111111100 01245788999999999 99999987
Q ss_pred ----------------------------------------ccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHh
Q 006476 310 ----------------------------------------IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFA 349 (643)
Q Consensus 310 ----------------------------------------~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~ 349 (643)
.-..+++.+.|++.||+.+|..+.++ .+++.|.
T Consensus 397 ~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d-------~~l~~~~ 469 (665)
T PRK14873 397 HCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGGD-------QVVDTVD 469 (665)
T ss_pred CCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEChH-------HHHHhhc
Confidence 23589999999999999999876543 4788896
Q ss_pred cCCceEEEecc----cccccccccCCCEEEEecCCC------CC-----HHHHHHHHhccCCCCCceEEEEEecCC
Q 006476 350 QGAIKILICTN----IVESGLDIQNANTIIVQDVQQ------FG-----LAQLYQLRGRVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 350 ~g~~~ILVaT~----i~~~GiDip~v~~VI~~d~p~------~s-----~~~~~Qr~GR~GR~g~~g~a~~l~~~~ 410 (643)
++.+|||+|+ +++ ++++.|++.|++. |. ...+.|-.||+||.++.|.+++...++
T Consensus 470 -~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~ 539 (665)
T PRK14873 470 -AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESS 539 (665)
T ss_pred -cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCC
Confidence 5999999999 665 4678888877652 21 345689999999999999999876554
No 106
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.91 E-value=1.2e-21 Score=222.70 Aligned_cols=122 Identities=19% Similarity=0.347 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccccc
Q 006476 286 KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 365 (643)
Q Consensus 286 ~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~G 365 (643)
.+.+.+.+.....++.+++|||++++.++.+++.|... ++.+..+||++++.+|.+++..|+.|+++|||||+++++|
T Consensus 428 i~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~--gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 428 VDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL--GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREG 505 (655)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh--ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCC
Confidence 34577777777788999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred ccccCCCEEEEecC-----CCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 366 LDIQNANTIIVQDV-----QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 366 iDip~v~~VI~~d~-----p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
+|+|++++||++|+ |+ +..+|+||+|||||. ..|.|+++++..+
T Consensus 506 fDiP~v~lVvi~DadifG~p~-~~~~~iqriGRagR~-~~G~vi~~~~~~~ 554 (655)
T TIGR00631 506 LDLPEVSLVAILDADKEGFLR-SERSLIQTIGRAARN-VNGKVIMYADKIT 554 (655)
T ss_pred eeeCCCcEEEEeCcccccCCC-CHHHHHHHhcCCCCC-CCCEEEEEEcCCC
Confidence 99999999999984 55 678999999999998 6899999998654
No 107
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=3.4e-22 Score=226.79 Aligned_cols=306 Identities=18% Similarity=0.182 Sum_probs=209.6
Q ss_pred HhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHH
Q 006476 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSER 162 (643)
Q Consensus 83 ~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~ 162 (643)
.......|++.|.-.--.+. ...|..++||.|||++|.+|++.....|+.|.|++|+..||.|.++.+...
T Consensus 76 ~R~lgm~~ydVQliGgl~L~---------~G~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l 146 (908)
T PRK13107 76 KRVFEMRHFDVQLLGGMVLD---------SNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPL 146 (908)
T ss_pred HHHhCCCcCchHHhcchHhc---------CCccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 34667788999987643331 235999999999999999999988888999999999999999999999985
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhh-hc----ccc-------cCccceEEeeccccc-----
Q 006476 163 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-GS----RVV-------YNNLGLLVVDEEQRF----- 225 (643)
Q Consensus 163 ~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L-~~----~~~-------~~~l~llViDEah~~----- 225 (643)
+.- .|++|+.+.++.+..++... -.+||++|||+.+ .+ .+. .+.+.++||||+|.+
T Consensus 147 ~~~-lGlsv~~i~~~~~~~~r~~~------Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEA 219 (908)
T PRK13107 147 FEF-LGLTVGINVAGLGQQEKKAA------YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEA 219 (908)
T ss_pred HHh-cCCeEEEecCCCCHHHHHhc------CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccC
Confidence 554 48999999987776443332 2489999999877 32 211 256788999999952
Q ss_pred -------ch-----hH-------HHHHHh--------------c--CCCceEE---------------------------
Q 006476 226 -------GV-----KQ-------KEKIAS--------------F--KISVDVL--------------------------- 243 (643)
Q Consensus 226 -------g~-----~~-------~~~l~~--------------~--~~~~~vl--------------------------- 243 (643)
|. .. ...+.. + ....+.+
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~ 299 (908)
T PRK13107 220 RTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLY 299 (908)
T ss_pred CCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCccccc
Confidence 00 00 001110 0 0001111
Q ss_pred --------------------------------------------------------------------------------
Q 006476 244 -------------------------------------------------------------------------------- 243 (643)
Q Consensus 244 -------------------------------------------------------------------------------- 243 (643)
T Consensus 300 ~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qn 379 (908)
T PRK13107 300 SAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQN 379 (908)
T ss_pred CchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHH
Confidence
Q ss_pred ---------EeccCCChHhHHHHHhcCCCcceeeCCCCC---ccceeEEEccCCH---HHHHHHHHHHHhcCCeEEEEec
Q 006476 244 ---------TLSATPIPRTLYLALTGFRDASLISTPPPE---RLPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLP 308 (643)
Q Consensus 244 ---------~lSATp~~~~~~~~~~~~~~~~~i~~~~~~---~~~v~~~~~~~~~---~~~~~~i~~~l~~~~qvlvf~~ 308 (643)
+||+|....... +....+..++.+|+.. |......+..... ..+.+.+......|.++||||+
T Consensus 380 fFr~Y~kL~GMTGTa~te~~E--f~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~ 457 (908)
T PRK13107 380 YFRQYEKLAGMTGTADTEAFE--FQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTV 457 (908)
T ss_pred HHHhhhHhhcccCCChHHHHH--HHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 122221111110 1111122223333221 1111111211111 2345555556678899999999
Q ss_pred CccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCC-----------------
Q 006476 309 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA----------------- 371 (643)
Q Consensus 309 ~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v----------------- 371 (643)
+++..+.++..|... ++++.++|+++++.+++.+.+.|+.|. |+|||++++||+||.=-
T Consensus 458 sv~~se~ls~~L~~~--gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~ 533 (908)
T PRK13107 458 SIEQSELLARLMVKE--KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQ 533 (908)
T ss_pred cHHHHHHHHHHHHHC--CCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHH
Confidence 999999999999998 899999999999999999999999998 99999999999999711
Q ss_pred --------------------CEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 372 --------------------NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 372 --------------------~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
=+||-...+. |..-=.|.+||+||.|.+|.+-+|++-++
T Consensus 534 ~~~~~~~~~~~~~~V~~~GGL~VIgTerhe-SrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 534 KAKIKADWQIRHDEVVAAGGLHILGTERHE-SRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred HHHHHHHHHhhHHHHHHcCCCEEEecccCc-hHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 1566555554 55555799999999999999999998554
No 108
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.91 E-value=1.7e-22 Score=236.33 Aligned_cols=311 Identities=15% Similarity=0.235 Sum_probs=213.1
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---CCCeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---~g~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
.++|+|.+++.++..-. .++.+.|++.++|.|||++++..+..... ..+.+|||||. .+..||.+++.+ |.
T Consensus 169 ~Lr~YQleGlnWLi~l~---~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~k-w~- 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLY---ENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRR-FC- 242 (1033)
T ss_pred chHHHHHHHHHHHHHHH---hcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHH-HC-
Confidence 68999999999887533 23567899999999999987655433222 23578999997 667889999987 43
Q ss_pred CCCceEEEEeCCCChHHHHHHHH-HHhcCCceEEEechHhhhcc---cccCccceEEeecccccchh---HHHHHHhcCC
Q 006476 166 YPDIKVGLLSRFQSKAEKEEHLD-MIKHGHLNIIVGTHSLLGSR---VVYNNLGLLVVDEEQRFGVK---QKEKIASFKI 238 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~~~~~~~~-~l~~g~~dIiI~T~~~L~~~---~~~~~l~llViDEah~~g~~---~~~~l~~~~~ 238 (643)
|.+++..++|. ...+..... .+..+..+|+|+|++.+... +.--++++|||||||++... ....++.+.
T Consensus 243 -p~l~v~~~~G~--~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~- 318 (1033)
T PLN03142 243 -PVLRAVKFHGN--PEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFS- 318 (1033)
T ss_pred -CCCceEEEeCC--HHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHHhh-
Confidence 45788888873 333332222 23456789999999988643 22246789999999997442 234455553
Q ss_pred CceEEEeccCCChHhHHHHHhcC--CCccee-------------------------------------------eCCCCC
Q 006476 239 SVDVLTLSATPIPRTLYLALTGF--RDASLI-------------------------------------------STPPPE 273 (643)
Q Consensus 239 ~~~vl~lSATp~~~~~~~~~~~~--~~~~~i-------------------------------------------~~~~~~ 273 (643)
....+++||||..+.+...+..+ ..+..+ ..||..
T Consensus 319 a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~ 398 (1033)
T PLN03142 319 TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKK 398 (1033)
T ss_pred cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCce
Confidence 44567899999765543322111 111000 111111
Q ss_pred ccceeEEEccCC-------------------------------------------------------------HHHHHH-
Q 006476 274 RLPIKTHLSAFS-------------------------------------------------------------KEKVIS- 291 (643)
Q Consensus 274 ~~~v~~~~~~~~-------------------------------------------------------------~~~~~~- 291 (643)
...+........ .-.++.
T Consensus 399 e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdk 478 (1033)
T PLN03142 399 ETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDK 478 (1033)
T ss_pred eEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHH
Confidence 110000000000 000011
Q ss_pred HHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcC---CceEEEecccccccccc
Q 006476 292 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG---AIKILICTNIVESGLDI 368 (643)
Q Consensus 292 ~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g---~~~ILVaT~i~~~GiDi 368 (643)
.+.+....+.+++||+.....++.+.+.|... ++.+..+||+++..+|+.+++.|.+. ...+|++|.+++.|||+
T Consensus 479 LL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~--g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 479 LLPKLKERDSRVLIFSQMTRLLDILEDYLMYR--GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred HHHHHHhcCCeEEeehhHHHHHHHHHHHHHHc--CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 11122235679999999988888898888876 88999999999999999999999753 34679999999999999
Q ss_pred cCCCEEEEecCCCCCHHHHHHHHhccCCCCCce--EEEEEecCCCC
Q 006476 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA--HAYLFYPDKSL 412 (643)
Q Consensus 369 p~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g--~a~~l~~~~~~ 412 (643)
..+++||+||.++ ++....|++||+.|.|+.. .+|.|++.+.+
T Consensus 557 t~Ad~VIiyD~dW-NP~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 557 ATADIVILYDSDW-NPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred hhCCEEEEeCCCC-ChHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 9999999999994 9999999999999999764 45667887754
No 109
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=2.8e-22 Score=227.67 Aligned_cols=122 Identities=16% Similarity=0.197 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 168 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~ 168 (643)
.+||+|.++++.+.. +.+++++++||+|||++|++|++..+..+..++||+||++||.|.++.+.. +..+.+
T Consensus 92 ~~tp~qvQ~I~~i~l-------~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~-L~k~lG 163 (970)
T PRK12899 92 DMVPYDVQILGAIAM-------HKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGS-VLRWLG 163 (970)
T ss_pred CCChHHHHHhhhhhc-------CCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHH-HHhhcC
Confidence 359999999999864 478999999999999999999998776777899999999999999999987 555558
Q ss_pred ceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhh-hccc-----cc-------CccceEEeecccc
Q 006476 169 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-GSRV-----VY-------NNLGLLVVDEEQR 224 (643)
Q Consensus 169 i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L-~~~~-----~~-------~~l~llViDEah~ 224 (643)
++++.+.|+.+..++...+ .+||+||||++| .+.+ .+ +.+.++||||||+
T Consensus 164 LsV~~i~GG~~~~eq~~~y------~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 164 LTTGVLVSGSPLEKRKEIY------QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred CeEEEEeCCCCHHHHHHHc------CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 9999999988877654332 389999999998 5422 22 2457999999996
No 110
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=1.1e-22 Score=235.84 Aligned_cols=313 Identities=19% Similarity=0.224 Sum_probs=208.2
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCC-cEEEEccCCCchHHHHHHHHHHHHHC----CCeEEEEeccHHHHHHHHHHHHHHh
Q 006476 89 EPTPDQKKAFLDVERDLTERETPM-DRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSERF 163 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~-d~li~a~TGsGKT~~~l~~i~~~~~~----g~~vlil~Pt~~La~Q~~~~~~~~~ 163 (643)
..++.|..++..+.... .+. ..++.||||+|||++++.++...... ..+++++.|++++..++++++++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~----~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLE----KRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcc----cccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 55899999999887633 234 89999999999999999998877665 5799999999999999999999866
Q ss_pred cCCCCceEEEEeCCCChHHHHHH-H---------HHHhcCCceEEEechHhhhc-cc---ccC-----ccceEEeecccc
Q 006476 164 SKYPDIKVGLLSRFQSKAEKEEH-L---------DMIKHGHLNIIVGTHSLLGS-RV---VYN-----NLGLLVVDEEQR 224 (643)
Q Consensus 164 ~~~~~i~v~~l~g~~~~~~~~~~-~---------~~l~~g~~dIiI~T~~~L~~-~~---~~~-----~l~llViDEah~ 224 (643)
+.+ ++....+++.....-.... . ......-..+.++|+-.+.. .. .+. -.+++|+||+|-
T Consensus 271 ~~~-~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 271 GLF-SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred ccc-ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 553 2222213332211110000 0 00000011222233222211 11 111 125799999998
Q ss_pred cchh-HHHHHH----h-cCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCC-----CccceeEEE-ccCCHH---HH
Q 006476 225 FGVK-QKEKIA----S-FKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP-----ERLPIKTHL-SAFSKE---KV 289 (643)
Q Consensus 225 ~g~~-~~~~l~----~-~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~-----~~~~v~~~~-~~~~~~---~~ 289 (643)
+... ....+. . ...+..+|+||||+++...............+..... +...+.... ...... ..
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhh
Confidence 7544 222211 1 1358899999999987666555444433332222111 111111111 111111 34
Q ss_pred HHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHh----cCCceEEEeccccccc
Q 006476 290 ISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFA----QGAIKILICTNIVESG 365 (643)
Q Consensus 290 ~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~----~g~~~ILVaT~i~~~G 365 (643)
...+......+.+++|+|||+..+.++++.|+...+ .+..+||.+...+|.+.++.+. .++..|+|||+++|.|
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEag 507 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP--KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAG 507 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC--CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEE
Confidence 556666778899999999999999999999999855 8999999999999998887544 5678999999999999
Q ss_pred ccccCCCEEEEecCCCCCHHHHHHHHhccCCCC--CceEEEEEecCCCC
Q 006476 366 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKSL 412 (643)
Q Consensus 366 iDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g--~~g~a~~l~~~~~~ 412 (643)
+|+. .+.+|-.-+| +.+++||.||++|.| ..|.+|.+...+..
T Consensus 508 vDid-fd~mITe~aP---idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 508 VDID-FDVLITELAP---IDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred eccc-cCeeeecCCC---HHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 9998 8888854444 689999999999999 67888887765543
No 111
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.88 E-value=2.9e-22 Score=223.80 Aligned_cols=310 Identities=19% Similarity=0.232 Sum_probs=214.3
Q ss_pred HhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHH-HHHHCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF-CVVSAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 83 ~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~-~~~~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
...+...+..||.+|+.. ..+ ..++|.|...||+.|||+++-+.++ ..+...+.++.+.|-...++.....+..
T Consensus 217 ~~kgi~~~fewq~ecls~--~~~---~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~ 291 (1008)
T KOG0950|consen 217 KDKGILKLFEWQAECLSL--PRL---LERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSP 291 (1008)
T ss_pred HhhhHHHHHHHHHHHhcc--hhh---hcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhh
Confidence 334445778899999742 111 1368999999999999999966555 4566788999999999999999888887
Q ss_pred HhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhh-------hcccccCccceEEeecccccchhHHHH--
Q 006476 162 RFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-------GSRVVYNNLGLLVVDEEQRFGVKQKEK-- 232 (643)
Q Consensus 162 ~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L-------~~~~~~~~l~llViDEah~~g~~~~~~-- 232 (643)
.+... |+.|....|...+..+. ...++.|+|-+.- .+.-.+..+|+|||||-|.+|.+.+..
T Consensus 292 ~~~~~-G~~ve~y~g~~~p~~~~--------k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~l 362 (1008)
T KOG0950|consen 292 FSIDL-GFPVEEYAGRFPPEKRR--------KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAIL 362 (1008)
T ss_pred hcccc-CCcchhhcccCCCCCcc--------cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHH
Confidence 55554 78888777755544322 2368999996532 223345778999999999987644321
Q ss_pred ---HH-----hcCCCceEEEeccCCChHhHHHHHhcCCCcceeeC--CC--------CCcccee---------------E
Q 006476 233 ---IA-----SFKISVDVLTLSATPIPRTLYLALTGFRDASLIST--PP--------PERLPIK---------------T 279 (643)
Q Consensus 233 ---l~-----~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~--~~--------~~~~~v~---------------~ 279 (643)
+. .....+|+++||||.+...+-.. |.+..+..+ .| .+...+. .
T Consensus 363 E~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~---~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~ 439 (1008)
T KOG0950|consen 363 ELLLAKILYENLETSVQIIGMSATIPNNSLLQD---WLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSS 439 (1008)
T ss_pred HHHHHHHHHhccccceeEeeeecccCChHHHHH---HhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhh
Confidence 21 22345789999999755433211 111111111 00 0000000 0
Q ss_pred EEccCCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC----------------------------------
Q 006476 280 HLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP---------------------------------- 325 (643)
Q Consensus 280 ~~~~~~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p---------------------------------- 325 (643)
.....+++.+...+.+.+.++.++++||++++.|+.++..+...+|
T Consensus 440 ~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ 519 (1008)
T KOG0950|consen 440 NLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAK 519 (1008)
T ss_pred hcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHhe
Confidence 0111122334445555666778899999999999999877743322
Q ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCC-----CHHHHHHHHhccCCCC
Q 006476 326 --GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF-----GLAQLYQLRGRVGRAD 398 (643)
Q Consensus 326 --~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~-----s~~~~~Qr~GR~GR~g 398 (643)
.+.++++|++++.++|+.+...|++|...|++||+.++.|+|.| ++.||+ .+|.+ +..+|.||+|||||+|
T Consensus 520 ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLP-ArRVIi-raP~~g~~~l~~~~YkQM~GRAGR~g 597 (1008)
T KOG0950|consen 520 TIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLP-ARRVII-RAPYVGREFLTRLEYKQMVGRAGRTG 597 (1008)
T ss_pred eccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCC-cceeEE-eCCccccchhhhhhHHhhhhhhhhcc
Confidence 13799999999999999999999999999999999999999999 555554 33333 4568999999999995
Q ss_pred --CceEEEEEecCCC
Q 006476 399 --KEAHAYLFYPDKS 411 (643)
Q Consensus 399 --~~g~a~~l~~~~~ 411 (643)
..|.+++++.+.+
T Consensus 598 idT~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 598 IDTLGDSILIIKSSE 612 (1008)
T ss_pred cccCcceEEEeeccc
Confidence 5699999998765
No 112
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.88 E-value=3.1e-20 Score=212.71 Aligned_cols=122 Identities=20% Similarity=0.352 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccccc
Q 006476 286 KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 365 (643)
Q Consensus 286 ~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~G 365 (643)
...+.+.+......+.+++|||++...++.+++.|... ++++..+||++++.+|..++..|+.|+++|+|||+++++|
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~--gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL--GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc--ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 34567777777778899999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred ccccCCCEEEEecCCCC----CHHHHHHHHhccCCCCCceEEEEEecCC
Q 006476 366 LDIQNANTIIVQDVQQF----GLAQLYQLRGRVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 366 iDip~v~~VI~~d~p~~----s~~~~~Qr~GR~GR~g~~g~a~~l~~~~ 410 (643)
+|+|++++||++|.+.| +..+|+||+||+||. ..|.|+++++..
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~ 557 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCC
Confidence 99999999999987432 678999999999996 789999999854
No 113
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.88 E-value=5.5e-21 Score=188.55 Aligned_cols=182 Identities=26% Similarity=0.225 Sum_probs=140.5
Q ss_pred CCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC-----CCeEEEEe
Q 006476 73 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMVLA 146 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-----g~~vlil~ 146 (643)
++.++ +++.+.+.++..|+++|.+|++.+.+ ++|+++++|||+|||++++.+++..+.. +++++|++
T Consensus 4 ~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-------~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~ 76 (203)
T cd00268 4 LGLSPELLRGIYALGFEKPTPIQARAIPPLLS-------GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILA 76 (203)
T ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc-------CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEc
Confidence 33444 77888887777899999999999864 5889999999999999999998876543 46899999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeec
Q 006476 147 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDE 221 (643)
Q Consensus 147 Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDE 221 (643)
||++|+.|+.+.+.. +....++++..++|+.+.......+ . +.++|+|+||+.+.+ ...+++++++|+||
T Consensus 77 p~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE 151 (203)
T cd00268 77 PTRELALQIAEVARK-LGKHTNLKVVVIYGGTSIDKQIRKL---K-RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDE 151 (203)
T ss_pred CCHHHHHHHHHHHHH-HhccCCceEEEEECCCCHHHHHHHh---c-CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeC
Confidence 999999999999987 4443468899998877655433322 2 458999999987653 34568899999999
Q ss_pred ccccch-----hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcce
Q 006476 222 EQRFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266 (643)
Q Consensus 222 ah~~g~-----~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~ 266 (643)
+|.+.. .....+..+..+.+++++|||++++..........++..
T Consensus 152 ~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~ 201 (203)
T cd00268 152 ADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVR 201 (203)
T ss_pred hHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEE
Confidence 998632 223345566678999999999998877766666555443
No 114
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.3e-20 Score=198.94 Aligned_cols=166 Identities=18% Similarity=0.253 Sum_probs=132.0
Q ss_pred CceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCccce--eEEEccCCHHHHHHHHHHHHhcCCeEEEEecCccChHHH
Q 006476 239 SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI--KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 316 (643)
Q Consensus 239 ~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~~v--~~~~~~~~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l 316 (643)
..|++.+||||.+..+..+...+ ...+ +.|.....- ...-....-+.+...+.....++..++|-+-+++.+|.+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~v--veQi-IRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdL 462 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNV--VEQI-IRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDL 462 (663)
T ss_pred cCCEEEEECCCChHHHHhccCce--eEEe-ecCCCCCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHH
Confidence 47899999999876654432111 1111 122222221 112222334678888888899999999999999999999
Q ss_pred HHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCC----CHHHHHHHHh
Q 006476 317 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF----GLAQLYQLRG 392 (643)
Q Consensus 317 ~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~----s~~~~~Qr~G 392 (643)
.++|.+. |+++.++|++...-+|.+++.+.+.|+++|||.-+.+-+|+|+|.|..|.+.|++.- |-.+++|-+|
T Consensus 463 T~Yl~e~--gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIG 540 (663)
T COG0556 463 TEYLKEL--GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIG 540 (663)
T ss_pred HHHHHhc--CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999998743 4578999999
Q ss_pred ccCCCCCceEEEEEecCC
Q 006476 393 RVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 393 R~GR~g~~g~a~~l~~~~ 410 (643)
||.|. -.|.++++.+.-
T Consensus 541 RAARN-~~GkvIlYAD~i 557 (663)
T COG0556 541 RAARN-VNGKVILYADKI 557 (663)
T ss_pred HHhhc-cCCeEEEEchhh
Confidence 99997 469999887653
No 115
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.86 E-value=9.3e-21 Score=180.84 Aligned_cols=149 Identities=27% Similarity=0.364 Sum_probs=117.0
Q ss_pred CHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHHHHHHhcCCCC
Q 006476 91 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK--QAMVLAPTIVLAKQHFDVVSERFSKYPD 168 (643)
Q Consensus 91 tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~--~vlil~Pt~~La~Q~~~~~~~~~~~~~~ 168 (643)
||.|.++++.+.+ +++++++||||+|||++++.+++..+.+++ ++++++|+++|+.|+++++...+.. ++
T Consensus 1 t~~Q~~~~~~i~~-------~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~ 72 (169)
T PF00270_consen 1 TPLQQEAIEAIIS-------GKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSN-TN 72 (169)
T ss_dssp -HHHHHHHHHHHT-------TSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTT-TT
T ss_pred CHHHHHHHHHHHc-------CCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccc-cc
Confidence 7999999999974 578999999999999999999998887755 9999999999999999999986655 56
Q ss_pred ceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccc-----ccCccceEEeecccccchh-H----HHHHHhc--
Q 006476 169 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQRFGVK-Q----KEKIASF-- 236 (643)
Q Consensus 169 i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~-----~~~~l~llViDEah~~g~~-~----~~~l~~~-- 236 (643)
+++..++++.+..... ...+ .++++|+|+||+.+.+.+ .+.++++||+||+|.+... . ...+..+
T Consensus 73 ~~~~~~~~~~~~~~~~--~~~~-~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 73 VRVVLLHGGQSISEDQ--REVL-SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR 149 (169)
T ss_dssp SSEEEESTTSCHHHHH--HHHH-HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT
T ss_pred cccccccccccccccc--cccc-cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcC
Confidence 8999999877644222 1122 456999999999886533 3566999999999998652 1 2223333
Q ss_pred CCCceEEEeccCCC
Q 006476 237 KISVDVLTLSATPI 250 (643)
Q Consensus 237 ~~~~~vl~lSATp~ 250 (643)
..+.+++++|||+.
T Consensus 150 ~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 150 FKNIQIILLSATLP 163 (169)
T ss_dssp TTTSEEEEEESSST
T ss_pred CCCCcEEEEeeCCC
Confidence 23689999999997
No 116
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.86 E-value=1.9e-20 Score=215.09 Aligned_cols=296 Identities=17% Similarity=0.155 Sum_probs=188.8
Q ss_pred CCCHHHHHHHHHhHHhhccCC---CCCcEEEEccCCCchHHHHHHHHHHHH--HCCCeEEEEeccHHHHHHHHHHHHHHh
Q 006476 89 EPTPDQKKAFLDVERDLTERE---TPMDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERF 163 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~---~~~d~li~a~TGsGKT~~~l~~i~~~~--~~g~~vlil~Pt~~La~Q~~~~~~~~~ 163 (643)
-++++|.+|+..+...+.... ..+..+++.+||||||++++..+.... ..+++++||+|+++|..|+.++|.. +
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~-~ 316 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQS-L 316 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHh-h
Confidence 478999999999988764321 235789999999999999877665543 3467899999999999999999987 3
Q ss_pred cCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccc-----cc--Ccc-ceEEeecccccchhH-HHHHH
Q 006476 164 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----VY--NNL-GLLVVDEEQRFGVKQ-KEKIA 234 (643)
Q Consensus 164 ~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~-----~~--~~l-~llViDEah~~g~~~-~~~l~ 234 (643)
... .+ .+..+.. .....+.+....|+|+|.+.+.+.+ .+ ..- .+||+|||||..... ...++
T Consensus 317 ~~~---~~---~~~~s~~---~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~ 387 (667)
T TIGR00348 317 QKD---CA---ERIESIA---ELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLK 387 (667)
T ss_pred CCC---CC---cccCCHH---HHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHH
Confidence 321 01 1111222 2223344555789999999886421 11 111 289999999987654 34455
Q ss_pred hcCCCceEEEeccCCChH----hHHHHHhcCCCcceeeC------CCCCccceeEE-------Ecc--------------
Q 006476 235 SFKISVDVLTLSATPIPR----TLYLALTGFRDASLIST------PPPERLPIKTH-------LSA-------------- 283 (643)
Q Consensus 235 ~~~~~~~vl~lSATp~~~----~~~~~~~~~~~~~~i~~------~~~~~~~v~~~-------~~~-------------- 283 (643)
...++...++|||||... +.........+. +..- ...-..|+... +..
T Consensus 388 ~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~-i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~ 466 (667)
T TIGR00348 388 KALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRY-LHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELL 466 (667)
T ss_pred hhCCCCcEEEEeCCCcccccccccccccCCCCCe-EEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhh
Confidence 556788999999999642 111110000010 0000 00000011000 000
Q ss_pred ---CCH-----------------------HHHHHHHHHHH-----hcCCeEEEEecCccChHHHHHHHHhhCCCC---cE
Q 006476 284 ---FSK-----------------------EKVISAIKYEL-----DRGGQVFYVLPRIKGLEEPMDFLQQAFPGV---DI 329 (643)
Q Consensus 284 ---~~~-----------------------~~~~~~i~~~l-----~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~---~v 329 (643)
..+ ..+...+.+.. ..+++.+|||.++..|..+++.|.+.+|.. ..
T Consensus 467 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~ 546 (667)
T TIGR00348 467 PERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASA 546 (667)
T ss_pred hccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCee
Confidence 000 00111111111 124899999999999999999998876543 45
Q ss_pred EEEeCCCCHH---------------------HHHHHHHHHhc-CCceEEEecccccccccccCCCEEEEecCCCCCHHHH
Q 006476 330 AIAHGQQYSR---------------------QLEETMEKFAQ-GAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 387 (643)
Q Consensus 330 ~~~hg~~~~~---------------------~r~~v~~~F~~-g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~ 387 (643)
.+++++.... ..+.++++|++ +..+|||+++++.+|+|.|.+++++...+-+ + ..+
T Consensus 547 vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk-~-h~L 624 (667)
T TIGR00348 547 IVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLK-Y-HGL 624 (667)
T ss_pred EEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccc-c-cHH
Confidence 5666654332 22478889976 6889999999999999999999999776655 4 458
Q ss_pred HHHHhccCCC
Q 006476 388 YQLRGRVGRA 397 (643)
Q Consensus 388 ~Qr~GR~GR~ 397 (643)
.|.+||+.|.
T Consensus 625 lQai~R~nR~ 634 (667)
T TIGR00348 625 LQAIARTNRI 634 (667)
T ss_pred HHHHHHhccc
Confidence 9999999994
No 117
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=3.4e-19 Score=202.61 Aligned_cols=305 Identities=19% Similarity=0.259 Sum_probs=205.3
Q ss_pred hcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHh
Q 006476 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERF 163 (643)
Q Consensus 84 ~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~ 163 (643)
......|.+.|.-.--.+. ...|..+.||+|||+++.+|++.....|++|.|++||..||.|+++.+...|
T Consensus 77 R~lGm~~ydVQliGg~~Lh---------~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 77 RVMGMRHFDVQLIGGMTLH---------EGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred HHhCCCcchhHHHhhhHhc---------cCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 3456788888987643332 2358999999999999999999999999999999999999999999999877
Q ss_pred cCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhh-----hccccc-------CccceEEeeccccc------
Q 006476 164 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRVVY-------NNLGLLVVDEEQRF------ 225 (643)
Q Consensus 164 ~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L-----~~~~~~-------~~l~llViDEah~~------ 225 (643)
..+ |++|+++.+..+..+++..+. +||++||+..+ .+.+.+ ++++++||||+|.+
T Consensus 148 ~~l-Gl~v~~i~~~~~~~err~~Y~------~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEAr 220 (913)
T PRK13103 148 EFL-GLSVGIVTPFQPPEEKRAAYA------ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEAR 220 (913)
T ss_pred ccc-CCEEEEECCCCCHHHHHHHhc------CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccC
Confidence 665 899999999888887776663 89999999875 666666 88999999999962
Q ss_pred ------ch-----h----HHHHHHhcCC-------------------C--------------------------------
Q 006476 226 ------GV-----K----QKEKIASFKI-------------------S-------------------------------- 239 (643)
Q Consensus 226 ------g~-----~----~~~~l~~~~~-------------------~-------------------------------- 239 (643)
|. . ....+..+.. .
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~ 300 (913)
T PRK13103 221 TPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYS 300 (913)
T ss_pred CceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccC
Confidence 10 0 0000110100 0
Q ss_pred --------------------------------------------------------------------------------
Q 006476 240 -------------------------------------------------------------------------------- 239 (643)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (643)
T Consensus 301 ~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qnf 380 (913)
T PRK13103 301 AHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNY 380 (913)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHH
Confidence
Q ss_pred ----ceEEEeccCCChHhHHHHHhcCCCcceeeCCCCC---ccceeEEEccCCH---HHHHHHHHHHHhcCCeEEEEecC
Q 006476 240 ----VDVLTLSATPIPRTLYLALTGFRDASLISTPPPE---RLPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLPR 309 (643)
Q Consensus 240 ----~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~---~~~v~~~~~~~~~---~~~~~~i~~~l~~~~qvlvf~~~ 309 (643)
.++-+||+|....... +..+.+..++.+|+.. |......+..... ..+.+.+......|.+|||-+.+
T Consensus 381 Fr~Y~kLsGMTGTa~te~~E--f~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~S 458 (913)
T PRK13103 381 FRLYNKLSGMTGTADTEAFE--FRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTAT 458 (913)
T ss_pred HHhcchhccCCCCCHHHHHH--HHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 0111222222111111 1111222333333221 1112222222222 23444455556788999999999
Q ss_pred ccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcC-CceEEEeccccccccccc-------------------
Q 006476 310 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIKILICTNIVESGLDIQ------------------- 369 (643)
Q Consensus 310 ~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g-~~~ILVaT~i~~~GiDip------------------- 369 (643)
++..+.+++.|... +++..++++.....+ .-+-. ..| .-.|.|||++++||.||.
T Consensus 459 Ve~SE~ls~~L~~~--gi~h~VLNAk~~~~E--A~IIa-~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~ 533 (913)
T PRK13103 459 IETSEHMSNLLKKE--GIEHKVLNAKYHEKE--AEIIA-QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQ 533 (913)
T ss_pred HHHHHHHHHHHHHc--CCcHHHhccccchhH--HHHHH-cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHH
Confidence 99999999999988 777777777754333 32222 234 456999999999999994
Q ss_pred ------------------CCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCC
Q 006476 370 ------------------NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 370 ------------------~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~ 412 (643)
+==+||-...+. |..-=.|.+||+||.|.+|.+-+|++-++-
T Consensus 534 ~~~~~~~~~~~~e~V~e~GGLhVIgTerhe-SrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 534 IAQIKADWQKRHQQVIEAGGLHVIASERHE-SRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHHHHhHHHHHHHcCCCEEEeeccCc-hHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 112566555554 555568999999999999999999885543
No 118
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=2.3e-19 Score=204.67 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=102.3
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccc
Q 006476 289 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368 (643)
Q Consensus 289 ~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDi 368 (643)
+.+.+......+.++||||++++.++.+++.|... ++++.++|+ .+.+|+..+..|+.+...|+|||++++||+||
T Consensus 587 li~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~--gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDI 662 (1025)
T PRK12900 587 IVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAK--RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDI 662 (1025)
T ss_pred HHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHc--CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCc
Confidence 33444444456789999999999999999999998 899999997 57899999999999999999999999999999
Q ss_pred c---CCCE-----EEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCC
Q 006476 369 Q---NANT-----IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 369 p---~v~~-----VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~ 412 (643)
+ +|.. ||....|. +...|.||+||+||.|.+|.+.+|++.++.
T Consensus 663 kl~~~V~~vGGL~VIgterhe-s~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 663 KLGEGVRELGGLFILGSERHE-SRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCccchhhhCCceeeCCCCCc-hHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 9 4543 36667776 788899999999999999999999997654
No 119
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.3e-18 Score=193.70 Aligned_cols=308 Identities=18% Similarity=0.219 Sum_probs=209.7
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHH
Q 006476 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 159 (643)
Q Consensus 80 ~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~ 159 (643)
+.........|++.|.-+.-.++. ..++.+.||+|||+++.+|++.....|++|.|++|+..||.|.++.+
T Consensus 69 Ea~~R~lg~r~ydvQlig~l~Ll~---------G~VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m 139 (764)
T PRK12326 69 EAAERTLGLRPFDVQLLGALRLLA---------GDVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWM 139 (764)
T ss_pred HHHHHHcCCCcchHHHHHHHHHhC---------CCcccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHH
Confidence 344556778999999999866643 24889999999999999999988899999999999999999999999
Q ss_pred HHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhh-----hccc-------ccCccceEEeeccccc--
Q 006476 160 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRV-------VYNNLGLLVVDEEQRF-- 225 (643)
Q Consensus 160 ~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L-----~~~~-------~~~~l~llViDEah~~-- 225 (643)
...|..+ |++|+++.+..+..+++..+ .+||++||..-+ .+.+ ..+.+.+.||||+|.+
T Consensus 140 ~~ly~~L-GLsvg~i~~~~~~~err~aY------~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLI 212 (764)
T PRK12326 140 GPLYEAL-GLTVGWITEESTPEERRAAY------ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLV 212 (764)
T ss_pred HHHHHhc-CCEEEEECCCCCHHHHHHHH------cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhee
Confidence 9877665 89999999988877776665 389999998643 2222 1256789999999841
Q ss_pred ----------ch---h-H----HHHHHhcCC--------C----------------------------------------
Q 006476 226 ----------GV---K-Q----KEKIASFKI--------S---------------------------------------- 239 (643)
Q Consensus 226 ----------g~---~-~----~~~l~~~~~--------~---------------------------------------- 239 (643)
|. . . ......+.. .
T Consensus 213 DeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL 292 (764)
T PRK12326 213 DEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVAL 292 (764)
T ss_pred ccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHH
Confidence 00 0 0 000000000 0
Q ss_pred ----------------------------------------------------------------------ceEEEeccCC
Q 006476 240 ----------------------------------------------------------------------VDVLTLSATP 249 (643)
Q Consensus 240 ----------------------------------------------------------------------~~vl~lSATp 249 (643)
.++-+||+|.
T Consensus 293 ~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa 372 (764)
T PRK12326 293 HAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTA 372 (764)
T ss_pred HHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCC
Confidence 1233444443
Q ss_pred ChHhHHHHHhcCCCcceeeCCCCC---ccceeEEEccCCH---HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhh
Q 006476 250 IPRTLYLALTGFRDASLISTPPPE---RLPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 323 (643)
Q Consensus 250 ~~~~~~~~~~~~~~~~~i~~~~~~---~~~v~~~~~~~~~---~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~ 323 (643)
......+ ..+.+..++.+|+.. +......+..... ..+.+.+.+....|.+|||.+.+++..+.++..|.+.
T Consensus 373 ~t~~~Ef--~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~ 450 (764)
T PRK12326 373 VAAGEQL--RQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAA 450 (764)
T ss_pred hhHHHHH--HHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC
Confidence 2222211 112233334444322 1111111111111 2345555556678899999999999999999999998
Q ss_pred CCCCcEEEEeCCCCHHHHHHHHHHHhcC-CceEEEecccccccccccCC---------------CEEEEecCCCCCHHHH
Q 006476 324 FPGVDIAIAHGQQYSRQLEETMEKFAQG-AIKILICTNIVESGLDIQNA---------------NTIIVQDVQQFGLAQL 387 (643)
Q Consensus 324 ~p~~~v~~~hg~~~~~~r~~v~~~F~~g-~~~ILVaT~i~~~GiDip~v---------------~~VI~~d~p~~s~~~~ 387 (643)
+++..++++.-...+-+ ++. ..| .-.|.|||++++||.||.=- =+||-...+. |..--
T Consensus 451 --gI~h~vLNAk~~~~EA~-IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerhe-SrRID 524 (764)
T PRK12326 451 --GVPAVVLNAKNDAEEAR-IIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHR-SERLD 524 (764)
T ss_pred --CCcceeeccCchHhHHH-HHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCc-hHHHH
Confidence 88889999875543322 222 223 34699999999999998721 2677666665 66667
Q ss_pred HHHHhccCCCCCceEEEEEecCCC
Q 006476 388 YQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 388 ~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
.|.+||+||.|.+|.+-+|++-++
T Consensus 525 ~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 525 NQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred HHHhcccccCCCCCceeEEEEcch
Confidence 899999999999999999998554
No 120
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.85 E-value=6.7e-20 Score=203.29 Aligned_cols=290 Identities=19% Similarity=0.230 Sum_probs=192.6
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC--CCeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~--g~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
..++.+|..||..+...+.. ++ ...|+++.||+|||.+|+..+...+.. -++||+|+-+++|..|.+..|.. |-+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~-g~-~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~-~~P 240 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSK-GQ-NRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFED-FLP 240 (875)
T ss_pred ccchHHHHHHHHHHHHHHhc-CC-ceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHH-hCC
Confidence 37899999999999887743 33 349999999999999998877776655 47999999999999999999876 444
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc----------cccCccceEEeecccccchhHHHHHHh
Q 006476 166 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR----------VVYNNLGLLVVDEEQRFGVKQKEKIAS 235 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~----------~~~~~l~llViDEah~~g~~~~~~l~~ 235 (643)
+ +-.+..+.+.... +.++|.++|.+.+.+. +....++|||||||||-.+...+.+-.
T Consensus 241 ~-~~~~n~i~~~~~~------------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I~d 307 (875)
T COG4096 241 F-GTKMNKIEDKKGD------------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSILD 307 (875)
T ss_pred C-ccceeeeecccCC------------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhHHHHH
Confidence 3 2334444331111 2479999998877532 233568999999999965544433333
Q ss_pred cCCCceEEEeccCCCh----HhHHHHH----------hcCCC-----cceeeC----CCCCccc-------------e--
Q 006476 236 FKISVDVLTLSATPIP----RTLYLAL----------TGFRD-----ASLIST----PPPERLP-------------I-- 277 (643)
Q Consensus 236 ~~~~~~vl~lSATp~~----~~~~~~~----------~~~~~-----~~~i~~----~~~~~~~-------------v-- 277 (643)
+... -.+++||||.. ++...+. .+..| ..++.+ +-....+ +
T Consensus 308 YFdA-~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~ 386 (875)
T COG4096 308 YFDA-ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDE 386 (875)
T ss_pred HHHH-HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCc
Confidence 3222 23356999854 2222110 00111 111111 0000000 0
Q ss_pred -----------eEEEccCCHHHHHHHHHHHHhc------CCeEEEEecCccChHHHHHHHHhhCCCCc---EEEEeCCCC
Q 006476 278 -----------KTHLSAFSKEKVISAIKYELDR------GGQVFYVLPRIKGLEEPMDFLQQAFPGVD---IAIAHGQQY 337 (643)
Q Consensus 278 -----------~~~~~~~~~~~~~~~i~~~l~~------~~qvlvf~~~~~~~e~l~~~L~~~~p~~~---v~~~hg~~~ 337 (643)
.+.+.....+.+...+...+.+ -+++||||.+..+++.+.+.|...+|+.+ +..+.|+-.
T Consensus 387 dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~ 466 (875)
T COG4096 387 DDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE 466 (875)
T ss_pred ccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch
Confidence 0001111122344444444444 26899999999999999999999998764 667777754
Q ss_pred HHHHHHHHHHHhcC--CceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCC
Q 006476 338 SRQLEETMEKFAQG--AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 397 (643)
Q Consensus 338 ~~~r~~v~~~F~~g--~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~ 397 (643)
. -+..+..|... -.+|.|+.+++.+|+|+|.|..++.+..-+ |...|.||+||.-|.
T Consensus 467 ~--~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~Vr-SktkF~QMvGRGTRl 525 (875)
T COG4096 467 Q--AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVR-SKTKFKQMVGRGTRL 525 (875)
T ss_pred h--hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhh-hHHHHHHHhcCcccc
Confidence 3 33455666553 457999999999999999998888666665 999999999999998
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.84 E-value=2.9e-18 Score=202.88 Aligned_cols=318 Identities=18% Similarity=0.221 Sum_probs=201.1
Q ss_pred CCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHH-HHHHhc
Q 006476 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV-VSERFS 164 (643)
Q Consensus 86 ~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~-~~~~~~ 164 (643)
..|+++|.|.+.++.+...+.+ +.++++.||||+|||.+|++|++....++++++|.+||++|+.|+... +. .+.
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~---~~~~~~eA~TG~GKT~ayLlp~~~~~~~~~~vvi~t~t~~Lq~Ql~~~~~~-~l~ 317 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTH---SEKSLIEAPTGTGKTLGYLLPALYYAITEKPVVISTNTKVLQSQLLEKDIP-LLN 317 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhcc---CCcEEEECCCCCchhHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHHH-HHH
Confidence 5678999999999988887743 678999999999999999999987666788999999999999998763 33 233
Q ss_pred CCC--CceEEEEeCCCChHHH--------------------------------------------HHHHHHHhc------
Q 006476 165 KYP--DIKVGLLSRFQSKAEK--------------------------------------------EEHLDMIKH------ 192 (643)
Q Consensus 165 ~~~--~i~v~~l~g~~~~~~~--------------------------------------------~~~~~~l~~------ 192 (643)
... .+++..+.|..+..-. ...|..+..
T Consensus 318 ~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~i~~~~~l~~ 397 (850)
T TIGR01407 318 EILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQVRHDGNLSK 397 (850)
T ss_pred HHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHHhhcCCCCCC
Confidence 211 3777777765432000 001222211
Q ss_pred -----------------CCceEEEechHhhhccc-----ccCccceEEeecccccc--------hh-------H----H-
Q 006476 193 -----------------GHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQRFG--------VK-------Q----K- 230 (643)
Q Consensus 193 -----------------g~~dIiI~T~~~L~~~~-----~~~~l~llViDEah~~g--------~~-------~----~- 230 (643)
..+||||+.|..|..+. .+.+..++||||||++. .. . .
T Consensus 398 ~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~~~~~~l~~l~ 477 (850)
T TIGR01407 398 KDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDYADIKYQIDLIG 477 (850)
T ss_pred CCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCHHHHHHHHHHHH
Confidence 13589999999887543 24556899999999731 00 0 0
Q ss_pred ---------------------------------------------------------HHH----Hh--------------
Q 006476 231 ---------------------------------------------------------EKI----AS-------------- 235 (643)
Q Consensus 231 ---------------------------------------------------------~~l----~~-------------- 235 (643)
..+ ..
T Consensus 478 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 557 (850)
T TIGR01407 478 KGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDDFKNIEQSLKE 557 (850)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 000 00
Q ss_pred ------------------c----------------CCCceEEEeccCCCh---HhHHHHHhcCCCcceeeC-CCCCc--c
Q 006476 236 ------------------F----------------KISVDVLTLSATPIP---RTLYLALTGFRDASLIST-PPPER--L 275 (643)
Q Consensus 236 ------------------~----------------~~~~~vl~lSATp~~---~~~~~~~~~~~~~~~i~~-~~~~~--~ 275 (643)
+ .....+|++|||... ........|+.+...... +++-. .
T Consensus 558 ~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~ 637 (850)
T TIGR01407 558 GHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAE 637 (850)
T ss_pred CCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHH
Confidence 0 012457889999863 333334456544332222 11111 1
Q ss_pred ceeEEE----c---cCCHH----HHHHHHHHHHh-cCCeEEEEecCccChHHHHHHHHhhC--CCCcEEEEeCCCCHHHH
Q 006476 276 PIKTHL----S---AFSKE----KVISAIKYELD-RGGQVFYVLPRIKGLEEPMDFLQQAF--PGVDIAIAHGQQYSRQL 341 (643)
Q Consensus 276 ~v~~~~----~---~~~~~----~~~~~i~~~l~-~~~qvlvf~~~~~~~e~l~~~L~~~~--p~~~v~~~hg~~~~~~r 341 (643)
....++ . ..+.+ .+...+.+.+. .+|+++||+++.+.++.+++.|.... .+.. ++..+.. ..|
T Consensus 638 ~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r 714 (850)
T TIGR01407 638 NQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSR 714 (850)
T ss_pred cCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccH
Confidence 111111 1 01222 23444444433 45899999999999999999997632 2333 3333333 578
Q ss_pred HHHHHHHhcCCceEEEecccccccccccCCC--EEEEecCCCCC-----------------------------HHHHHHH
Q 006476 342 EETMEKFAQGAIKILICTNIVESGLDIQNAN--TIIVQDVQQFG-----------------------------LAQLYQL 390 (643)
Q Consensus 342 ~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~--~VI~~d~p~~s-----------------------------~~~~~Qr 390 (643)
.++++.|++++..||+||+.+.+|||+|+.. .||+...|--+ ...+.|.
T Consensus 715 ~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa 794 (850)
T TIGR01407 715 AKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQA 794 (850)
T ss_pred HHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHh
Confidence 8999999999999999999999999999976 46666654111 1235699
Q ss_pred HhccCCCCCceEEEEEecCC
Q 006476 391 RGRVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 391 ~GR~GR~g~~g~a~~l~~~~ 410 (643)
+||.=|+...--++++.++.
T Consensus 795 ~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 795 LGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred hccccccCCceEEEEEEccc
Confidence 99999985433244444443
No 122
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.83 E-value=1.6e-18 Score=189.18 Aligned_cols=312 Identities=19% Similarity=0.253 Sum_probs=217.2
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHH--HHHHHC-CCeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI--FCVVSA-GKQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i--~~~~~~-g~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
..++++|.+.++++..-. ..+-+.|+....|-|||++.+..+ +..... .+.-+|++|...|.+ |.++|++ |.
T Consensus 166 g~lr~YQveGlnWLi~l~---engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~N-W~~Ef~r-f~ 240 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLY---ENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDN-WMNEFKR-FT 240 (971)
T ss_pred CccchhhhccHHHHHHHH---hcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHH-HHHHHHH-hC
Confidence 378999999999988743 346789999999999999964333 233222 457899999877654 6777875 54
Q ss_pred CCCCceEEEEeCCCChHHHHHHHHHH-hcCCceEEEechHhhhcccc---cCccceEEeecccccchhH---HHHHHhcC
Q 006476 165 KYPDIKVGLLSRFQSKAEKEEHLDMI-KHGHLNIIVGTHSLLGSRVV---YNNLGLLVVDEEQRFGVKQ---KEKIASFK 237 (643)
Q Consensus 165 ~~~~i~v~~l~g~~~~~~~~~~~~~l-~~g~~dIiI~T~~~L~~~~~---~~~l~llViDEah~~g~~~---~~~l~~~~ 237 (643)
|++++..++| +..++....+.+ ..|..+|+|+|++...++-. --++.++|||||||+-... .+.++.+
T Consensus 241 --P~l~~~~~~G--dk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f- 315 (971)
T KOG0385|consen 241 --PSLNVVVYHG--DKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREF- 315 (971)
T ss_pred --CCcceEEEeC--CHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHHHh-
Confidence 5799999999 456666555554 45689999999998765422 2567899999999984432 3445555
Q ss_pred CCceEEEeccCCChHhHHHHHhcCC--Cccee-------------------------------------------eCCCC
Q 006476 238 ISVDVLTLSATPIPRTLYLALTGFR--DASLI-------------------------------------------STPPP 272 (643)
Q Consensus 238 ~~~~vl~lSATp~~~~~~~~~~~~~--~~~~i-------------------------------------------~~~~~ 272 (643)
.....|++|+||..+.++..+..+. -+.++ ..||.
T Consensus 316 ~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppK 395 (971)
T KOG0385|consen 316 KTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPK 395 (971)
T ss_pred cccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCc
Confidence 4455678999998766554332210 00000 01221
Q ss_pred CccceeE----------------------------------------------EE-------ccCC-HH---------HH
Q 006476 273 ERLPIKT----------------------------------------------HL-------SAFS-KE---------KV 289 (643)
Q Consensus 273 ~~~~v~~----------------------------------------------~~-------~~~~-~~---------~~ 289 (643)
....+.. |+ .++. .+ .+
T Consensus 396 kE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~v 475 (971)
T KOG0385|consen 396 KELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLV 475 (971)
T ss_pred ceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceeh
Confidence 1110000 00 0000 00 02
Q ss_pred HHHHH-HHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCC---ceEEEeccccccc
Q 006476 290 ISAIK-YELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA---IKILICTNIVESG 365 (643)
Q Consensus 290 ~~~i~-~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~---~~ILVaT~i~~~G 365 (643)
++.+. +...+|.+|++|..-....+-+.++..-+ ++....+.|.++-++|...++.|.... .-.|++|...+-|
T Consensus 476 LDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R--~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLG 553 (971)
T KOG0385|consen 476 LDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLR--GYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLG 553 (971)
T ss_pred HHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhc--CceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccc
Confidence 33322 33356788999977766666666666655 889999999999999999999998643 5589999999999
Q ss_pred ccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCc--eEEEEEecCCCC
Q 006476 366 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE--AHAYLFYPDKSL 412 (643)
Q Consensus 366 iDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~--g~a~~l~~~~~~ 412 (643)
||+..+++||.||.++ ++..=.|..-||.|.|+. -.+|.|++.+.+
T Consensus 554 INL~aADtVIlyDSDW-NPQ~DLQAmDRaHRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 554 INLTAADTVILYDSDW-NPQVDLQAMDRAHRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred cccccccEEEEecCCC-CchhhhHHHHHHHhhCCcCceEEEEEeccchH
Confidence 9999999999999995 998889999999999864 567889998865
No 123
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.83 E-value=1.1e-18 Score=196.33 Aligned_cols=283 Identities=23% Similarity=0.331 Sum_probs=206.8
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~ 157 (643)
+.+-|.+...+.|...|.-....+.+ ++..-+.||||.|||.-.+...+.....|+++++++||+.|+.|.++
T Consensus 71 ~~~fF~k~~G~~~ws~QR~WakR~~r-------g~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~ 143 (1187)
T COG1110 71 FEEFFKKATGFRPWSAQRVWAKRLVR-------GKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYE 143 (1187)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHc-------CCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHH
Confidence 55678888899999999998888765 67899999999999988777766666788999999999999999999
Q ss_pred HHHHHhcCC--CCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccc-c--CccceEEeeccccc-------
Q 006476 158 VVSERFSKY--PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-Y--NNLGLLVVDEEQRF------- 225 (643)
Q Consensus 158 ~~~~~~~~~--~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~-~--~~l~llViDEah~~------- 225 (643)
++.+..... ..+.+. +|+..+..+++..++.+.+|+.||+|+|.+-|.+... + .++++|++|.+|.+
T Consensus 144 kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNv 222 (1187)
T COG1110 144 RLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNV 222 (1187)
T ss_pred HHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccH
Confidence 998743332 123444 7888788899999999999999999999998876432 2 46899999999952
Q ss_pred -------chhHH---------------------HHHH------------hcCCCceEEEeccCCChHhH----HHHHhcC
Q 006476 226 -------GVKQK---------------------EKIA------------SFKISVDVLTLSATPIPRTL----YLALTGF 261 (643)
Q Consensus 226 -------g~~~~---------------------~~l~------------~~~~~~~vl~lSATp~~~~~----~~~~~~~ 261 (643)
|+... +.++ +.....+++..|||..|+.. ...+.++
T Consensus 223 DriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF 302 (1187)
T COG1110 223 DRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF 302 (1187)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC
Confidence 32110 0000 01234678899999877652 2222232
Q ss_pred CCcceeeCCCCCccceeEEEccCCHHHHHHHHHHHHhcCCeEEEEecC---ccChHHHHHHHHhhCCCCcEEEEeCCCCH
Q 006476 262 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR---IKGLEEPMDFLQQAFPGVDIAIAHGQQYS 338 (643)
Q Consensus 262 ~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~i~~~l~~~~qvlvf~~~---~~~~e~l~~~L~~~~p~~~v~~~hg~~~~ 338 (643)
.-.+ ....-|.-+..++.....+.+.+.+ +.+.. -.+||++. ++.++++++.|+.. |+++..+|+.
T Consensus 303 evG~---~~~~LRNIvD~y~~~~~~e~~~elv-k~lG~--GgLIfV~~d~G~e~aeel~e~Lr~~--Gi~a~~~~a~--- 371 (1187)
T COG1110 303 EVGS---GGEGLRNIVDIYVESESLEKVVELV-KKLGD--GGLIFVPIDYGREKAEELAEYLRSH--GINAELIHAE--- 371 (1187)
T ss_pred ccCc---cchhhhheeeeeccCccHHHHHHHH-HHhCC--CeEEEEEcHHhHHHHHHHHHHHHhc--CceEEEeecc---
Confidence 1111 1111122344444443334444443 33444 45888998 78899999999998 9999999984
Q ss_pred HHHHHHHHHHhcCCceEEEec----ccccccccccC-CCEEEEecCCC
Q 006476 339 RQLEETMEKFAQGAIKILICT----NIVESGLDIQN-ANTIIVQDVQQ 381 (643)
Q Consensus 339 ~~r~~v~~~F~~g~~~ILVaT----~i~~~GiDip~-v~~VI~~d~p~ 381 (643)
.++.++.|..|++++||++ .++-||+|+|. ++++|.++.|+
T Consensus 372 --~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 372 --KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred --chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 3788999999999999987 47999999997 58899999994
No 124
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.82 E-value=1.4e-18 Score=197.88 Aligned_cols=360 Identities=17% Similarity=0.238 Sum_probs=252.9
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCC-----C-CCCChhHHHHHhcCCC----CCCHHHHHHHHHhHHhhcc
Q 006476 38 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP-----P-YPKNPAIAEFAAQFPY----EPTPDQKKAFLDVERDLTE 107 (643)
Q Consensus 38 ~~w~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~-----~-~~~~~~~~~~~~~~~~----~~tp~Q~~ai~~i~~~~~~ 107 (643)
..|+.. ..|...+...++.|..|..++.. . .|..+-...++.+-.| +++.+|.+.+++++..+..
T Consensus 314 ~TWE~~-----~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~ 388 (1373)
T KOG0384|consen 314 CTWEDA-----EDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYK 388 (1373)
T ss_pred ccccch-----hhhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCccccccchhhhhhcccchhHHHHHHh
Confidence 567774 55666677778888888754322 1 2344445556655444 9999999999999887753
Q ss_pred CCCCCcEEEEccCCCchHHH---HHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHH
Q 006476 108 RETPMDRLICGDVGFGKTEV---ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKE 184 (643)
Q Consensus 108 ~~~~~d~li~a~TGsGKT~~---~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~ 184 (643)
+.++|+....|-|||.. |+..++....-.+..||+||...++ .|.++|..+. +.++.+++|.....+..
T Consensus 389 ---~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~-~W~~ef~~w~----~mn~i~y~g~~~sr~~i 460 (1373)
T KOG0384|consen 389 ---RNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTIT-AWEREFETWT----DMNVIVYHGNLESRQLI 460 (1373)
T ss_pred ---cccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhH-HHHHHHHHHh----hhceeeeecchhHHHHH
Confidence 68899999999999987 4555555554456789999986554 4667776543 58999999977666666
Q ss_pred HHHHHHhcC-----CceEEEechHhhhcccc-c--CccceEEeecccccchh---HHHHHHhcCCCceEEEeccCCChHh
Q 006476 185 EHLDMIKHG-----HLNIIVGTHSLLGSRVV-Y--NNLGLLVVDEEQRFGVK---QKEKIASFKISVDVLTLSATPIPRT 253 (643)
Q Consensus 185 ~~~~~l~~g-----~~dIiI~T~~~L~~~~~-~--~~l~llViDEah~~g~~---~~~~l~~~~~~~~vl~lSATp~~~~ 253 (643)
+.++-...+ +.+++++|.+.++++.. + -++.+++||||||+-.. ..+.+..+..+ +.|++|+||..+.
T Consensus 461 ~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~-~rllitgTPlQNs 539 (1373)
T KOG0384|consen 461 RQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMN-HRLLITGTPLQNS 539 (1373)
T ss_pred HHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhccc-ceeeecCCCcccc
Confidence 666666655 68999999998876543 2 35678999999998532 23445555444 5567999997655
Q ss_pred HHHHHhcC--CCccee---------------------------------------eCCCCCccceeE-------------
Q 006476 254 LYLALTGF--RDASLI---------------------------------------STPPPERLPIKT------------- 279 (643)
Q Consensus 254 ~~~~~~~~--~~~~~i---------------------------------------~~~~~~~~~v~~------------- 279 (643)
+...++.+ ..+..+ +.||....-+..
T Consensus 540 ikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~I 619 (1373)
T KOG0384|consen 540 LKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAI 619 (1373)
T ss_pred HHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHH
Confidence 44332111 111110 001111000000
Q ss_pred ---------------------------------EEccCCHH------------H-------------HHHHHHHHH-hcC
Q 006476 280 ---------------------------------HLSAFSKE------------K-------------VISAIKYEL-DRG 300 (643)
Q Consensus 280 ---------------------------------~~~~~~~~------------~-------------~~~~i~~~l-~~~ 300 (643)
++..-.++ . +++.++-.+ ..|
T Consensus 620 LtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~G 699 (1373)
T KOG0384|consen 620 LTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGG 699 (1373)
T ss_pred HHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCC
Confidence 00000000 0 111111122 346
Q ss_pred CeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcC---CceEEEecccccccccccCCCEEEEe
Q 006476 301 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG---AIKILICTNIVESGLDIQNANTIIVQ 377 (643)
Q Consensus 301 ~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g---~~~ILVaT~i~~~GiDip~v~~VI~~ 377 (643)
++||||..-+...+-++++|..+ ++..-.+.|.+..+.|+..+..|..- ..-.|+||...+-|||+..+++||+|
T Consensus 700 HrVLIFSQMVRmLDIL~eYL~~r--~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIF 777 (1373)
T KOG0384|consen 700 HRVLIFSQMVRMLDILAEYLSLR--GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIF 777 (1373)
T ss_pred ceEEEhHHHHHHHHHHHHHHHHc--CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEe
Confidence 89999999999999999999998 89999999999999999999999864 46699999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhccCCCCCc--eEEEEEecCCCCCc
Q 006476 378 DVQQFGLAQLYQLRGRVGRADKE--AHAYLFYPDKSLLS 414 (643)
Q Consensus 378 d~p~~s~~~~~Qr~GR~GR~g~~--g~a~~l~~~~~~~~ 414 (643)
|.++ ++..=.|...||.|.|++ -.+|.|++.+.+..
T Consensus 778 DSDW-NPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEe 815 (1373)
T KOG0384|consen 778 DSDW-NPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEE 815 (1373)
T ss_pred CCCC-CcchHHHHHHHHHhhcccceEEEEEEecCCchHH
Confidence 9995 999999999999999875 45789999987643
No 125
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=9e-19 Score=183.00 Aligned_cols=312 Identities=18% Similarity=0.168 Sum_probs=207.2
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 168 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~ 168 (643)
.++|+|.+++..+. ++.+-+.-+|+.|.|+|||++.+-++... .+.+|||+.+-+-+.||...|+. |+....
T Consensus 302 ~iRpYQEksL~KMF----GNgRARSGiIVLPCGAGKtLVGvTAa~ti---kK~clvLcts~VSVeQWkqQfk~-wsti~d 373 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMF----GNGRARSGIIVLPCGAGKTLVGVTAACTI---KKSCLVLCTSAVSVEQWKQQFKQ-WSTIQD 373 (776)
T ss_pred ccCchHHHHHHHHh----CCCcccCceEEEecCCCCceeeeeeeeee---cccEEEEecCccCHHHHHHHHHh-hcccCc
Confidence 78999999987765 45666788999999999999987766544 68999999999999999999986 665544
Q ss_pred ceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhh-------------cccccCccceEEeecccccchhHHHHHHh
Q 006476 169 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-------------SRVVYNNLGLLVVDEEQRFGVKQKEKIAS 235 (643)
Q Consensus 169 i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~-------------~~~~~~~l~llViDEah~~g~~~~~~l~~ 235 (643)
-.++..++.. +++ ..+.+.|+|+|+.++. +.+.-..+|++++||+|-.......++..
T Consensus 374 ~~i~rFTsd~--Ke~-------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 374 DQICRFTSDA--KER-------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred cceEEeeccc--ccc-------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 5566655522 111 1234789999998774 22344789999999999876654444333
Q ss_pred cCCCceEEEeccCCChHhH--------------HHHHhcCCCcceeeC-------------------CCCCccceeEEEc
Q 006476 236 FKISVDVLTLSATPIPRTL--------------YLALTGFRDASLIST-------------------PPPERLPIKTHLS 282 (643)
Q Consensus 236 ~~~~~~vl~lSATp~~~~~--------------~~~~~~~~~~~~i~~-------------------~~~~~~~v~~~~~ 282 (643)
+-...--|++|||.-.+.. ...|..+.....|.. ....+...-.++.
T Consensus 445 iv~aHcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvM 524 (776)
T KOG1123|consen 445 IVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVM 524 (776)
T ss_pred HHHHHhhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeec
Confidence 3233345799999632211 000000000000000 0000111112222
Q ss_pred cCCHHHHHHHHHHHH-hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcC-CceEEEecc
Q 006476 283 AFSKEKVISAIKYEL-DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIKILICTN 360 (643)
Q Consensus 283 ~~~~~~~~~~i~~~l-~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g-~~~ILVaT~ 360 (643)
..+.-...+.+.+.. .+|.+++||..++-.....+-.|.+ -+++|..++.+|.++++.|.-+ .++-++-.-
T Consensus 525 NP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSK 597 (776)
T KOG1123|consen 525 NPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSK 597 (776)
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-------ceEECCCchhHHHHHHHhcccCCccceEEEee
Confidence 223333445554443 4677899998776555555544433 3789999999999999999864 678888889
Q ss_pred cccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCC------ceEEEEEecCCCCCcHHHHHHHHHH
Q 006476 361 IVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK------EAHAYLFYPDKSLLSDQALERLAAL 424 (643)
Q Consensus 361 i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~------~g~a~~l~~~~~~~~~~~~~rl~~i 424 (643)
+..+.+|+|.+|++|......-|..|--||.||.-|+.+ .++-|.+++.+....-...+|.+-+
T Consensus 598 VgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKRQ~FL 667 (776)
T KOG1123|consen 598 VGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKRQQFL 667 (776)
T ss_pred ccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhhhhhh
Confidence 999999999999999887765466788999999999832 3556777877766555566664444
No 126
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.78 E-value=1.4e-16 Score=186.55 Aligned_cols=313 Identities=20% Similarity=0.228 Sum_probs=198.1
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHH-HHHHHHhcC
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF-DVVSERFSK 165 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~-~~~~~~~~~ 165 (643)
.|+++|.|.+....+.+.+.+ +..+++.|+||+|||++|++|++... ++++++|++||++|++|+. +.+. .++.
T Consensus 243 ~~e~R~~Q~~ma~~V~~~l~~---~~~~~~eA~tGtGKT~ayllp~l~~~-~~~~vvI~t~T~~Lq~Ql~~~~i~-~l~~ 317 (820)
T PRK07246 243 GLEERPKQESFAKLVGEDFHD---GPASFIEAQTGIGKTYGYLLPLLAQS-DQRQIIVSVPTKILQDQIMAEEVK-AIQE 317 (820)
T ss_pred CCccCHHHHHHHHHHHHHHhC---CCcEEEECCCCCcHHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHH-HHHH
Confidence 479999999999888887743 57899999999999999999987643 5789999999999999995 4444 3555
Q ss_pred CCCceEEEEeCCCChHHH--------------------------------------------HHHHHHHhc---------
Q 006476 166 YPDIKVGLLSRFQSKAEK--------------------------------------------EEHLDMIKH--------- 192 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~~~--------------------------------------------~~~~~~l~~--------- 192 (643)
..++++..+.|..+.--. ...|..+..
T Consensus 318 ~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp 397 (820)
T PRK07246 318 VFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSL 397 (820)
T ss_pred hcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCC
Confidence 446777766654431100 011222221
Q ss_pred --------------CCceEEEechHhhhccc----ccCccceEEeecccccch-------hH------HH----------
Q 006476 193 --------------GHLNIIVGTHSLLGSRV----VYNNLGLLVVDEEQRFGV-------KQ------KE---------- 231 (643)
Q Consensus 193 --------------g~~dIiI~T~~~L~~~~----~~~~l~llViDEah~~g~-------~~------~~---------- 231 (643)
..+||||+.|..|..++ .+...+.+||||||++.. .. ..
T Consensus 398 ~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 477 (820)
T PRK07246 398 FYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKDFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSGPL 477 (820)
T ss_pred cchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccCCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHHHH
Confidence 13589999999887543 356789999999997410 00 00
Q ss_pred -------------------------------------------HHH--------------h----c--------------
Q 006476 232 -------------------------------------------KIA--------------S----F-------------- 236 (643)
Q Consensus 232 -------------------------------------------~l~--------------~----~-------------- 236 (643)
.+. . +
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~l~ 557 (820)
T PRK07246 478 PLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTYLN 557 (820)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeEEE
Confidence 000 0 0
Q ss_pred -------------CCCceEEEeccCCC--hHhHHHHHhcCCCcceeeCCCCCccceeEEE----cc---CCHH----HHH
Q 006476 237 -------------KISVDVLTLSATPI--PRTLYLALTGFRDASLISTPPPERLPIKTHL----SA---FSKE----KVI 290 (643)
Q Consensus 237 -------------~~~~~vl~lSATp~--~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~----~~---~~~~----~~~ 290 (643)
.....+|++|||.. +........|+.+......+.........++ .. .+.+ .+.
T Consensus 558 ~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~ 637 (820)
T PRK07246 558 SASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIA 637 (820)
T ss_pred eeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHH
Confidence 00135678888874 2222223345433322222111100000111 10 1112 344
Q ss_pred HHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccC
Q 006476 291 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370 (643)
Q Consensus 291 ~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~ 370 (643)
+.+......+|+++|++++.+.++.+++.|... ...+ ...|... .+.+++++|++++..||++|..+.+|||+|+
T Consensus 638 ~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~--~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~ 712 (820)
T PRK07246 638 KRLEELKQLQQPILVLFNSKKHLLAVSDLLDQW--QVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQ 712 (820)
T ss_pred HHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhc--CCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCC
Confidence 455444456799999999999999999999765 4444 5555322 2466899999988899999999999999973
Q ss_pred --CCEEEEecCCCC---C--------------------------HHHHHHHHhccCCCC-CceEEEEEecCC
Q 006476 371 --ANTIIVQDVQQF---G--------------------------LAQLYQLRGRVGRAD-KEAHAYLFYPDK 410 (643)
Q Consensus 371 --v~~VI~~d~p~~---s--------------------------~~~~~Qr~GR~GR~g-~~g~a~~l~~~~ 410 (643)
...||+...|-- + .-.+.|-+||.=|+. ..|. ++++++.
T Consensus 713 ~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gv-v~ilD~R 783 (820)
T PRK07246 713 ADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSA-VLILDRR 783 (820)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEE-EEEECCc
Confidence 556677665511 1 123569999999995 3564 4444443
No 127
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.76 E-value=9.8e-17 Score=176.30 Aligned_cols=315 Identities=18% Similarity=0.195 Sum_probs=211.3
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHH--HHHHHHHH-HCCCeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA--LRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~--l~~i~~~~-~~g~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
.+.|+|++++.++.+- ......-|+..+.|-|||.+. .++++... .--+.+||+||. .+..||.++|+.++
T Consensus 205 ~Lf~yQreGV~WL~~L---~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~-- 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWEL---YCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWW-- 278 (923)
T ss_pred HhhHHHHHHHHHHHHH---HhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhC--
Confidence 6789999999998762 233455699999999999883 23333322 223689999997 46788999998753
Q ss_pred CCCceEEEEeCCCChH---------HHHHHHHHHhcCCceEEEechHhhhc---ccccCccceEEeecccccchh---HH
Q 006476 166 YPDIKVGLLSRFQSKA---------EKEEHLDMIKHGHLNIIVGTHSLLGS---RVVYNNLGLLVVDEEQRFGVK---QK 230 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~---------~~~~~~~~l~~g~~dIiI~T~~~L~~---~~~~~~l~llViDEah~~g~~---~~ 230 (643)
|.++|.++++..+.. .+...+.....-...|+|+|+..+.- ++.-..++++|+||.|++-.. ..
T Consensus 279 -p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~is 357 (923)
T KOG0387|consen 279 -PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSKIS 357 (923)
T ss_pred -cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccHHH
Confidence 457999998855421 11111222222235799999987652 344567899999999998432 23
Q ss_pred HHHHhcCCCceEEEeccCCChHhHHHHHhcC--CCcceeeC---------------------------------------
Q 006476 231 EKIASFKISVDVLTLSATPIPRTLYLALTGF--RDASLIST--------------------------------------- 269 (643)
Q Consensus 231 ~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~--~~~~~i~~--------------------------------------- 269 (643)
..++++ ...+.+.+|+||+.+.+...+..+ ..+..+.+
T Consensus 358 lackki-~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI 436 (923)
T KOG0387|consen 358 LACKKI-RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLI 436 (923)
T ss_pred HHHHhc-cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 445555 456677899999876554333110 00000000
Q ss_pred -----------------CCCCccceeEE--------------------------------------------Ec------
Q 006476 270 -----------------PPPERLPIKTH--------------------------------------------LS------ 282 (643)
Q Consensus 270 -----------------~~~~~~~v~~~--------------------------------------------~~------ 282 (643)
|.....-+-.. +.
T Consensus 437 ~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~ 516 (923)
T KOG0387|consen 437 SPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDE 516 (923)
T ss_pred HHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccccc
Confidence 00000000000 00
Q ss_pred ----cC--C------HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhc
Q 006476 283 ----AF--S------KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ 350 (643)
Q Consensus 283 ----~~--~------~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~ 350 (643)
.+ + ...+...+......|.+++.|..++..++-+...|.. .+++....+.|..+...|...+++|.+
T Consensus 517 ~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~-~~~ysylRmDGtT~~~~R~~lVd~Fne 595 (923)
T KOG0387|consen 517 KQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRR-AKGYSYLRMDGTTPAALRQKLVDRFNE 595 (923)
T ss_pred ccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHh-cCCceEEEecCCCccchhhHHHHhhcC
Confidence 00 0 0113333444455677888888888878777777774 358999999999999999999999998
Q ss_pred CCc--eEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCc--eEEEEEecCCCCC
Q 006476 351 GAI--KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE--AHAYLFYPDKSLL 413 (643)
Q Consensus 351 g~~--~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~--g~a~~l~~~~~~~ 413 (643)
++. -.|++|.+.+-|+|+..+|.||+||+++ +++.=.|.+-|+-|.|+. -.+|.|++...+.
T Consensus 596 ~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdW-NPStD~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 596 DESIFVFLLTTRVGGLGLNLTGANRVIIFDPDW-NPSTDNQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred CCceEEEEEEecccccccccccCceEEEECCCC-CCccchHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 763 3678889999999999999999999985 999999999999999865 4577788887653
No 128
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.74 E-value=6.4e-16 Score=175.46 Aligned_cols=270 Identities=17% Similarity=0.152 Sum_probs=178.1
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHH
Q 006476 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 159 (643)
Q Consensus 80 ~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~ 159 (643)
+.........|++.|.-+.-.+. ...|+.+.||.|||+++.+|++-....|+.|-|++++..||.+-++.+
T Consensus 67 Ea~~R~lG~r~ydvQlig~l~L~---------~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m 137 (870)
T CHL00122 67 EASFRTLGLRHFDVQLIGGLVLN---------DGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWM 137 (870)
T ss_pred HHHHHHhCCCCCchHhhhhHhhc---------CCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHH
Confidence 34445667789999988753331 346999999999999999998776678999999999999999999999
Q ss_pred HHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHh-----hhccc-------ccCccceEEeeccccc--
Q 006476 160 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL-----LGSRV-------VYNNLGLLVVDEEQRF-- 225 (643)
Q Consensus 160 ~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~-----L~~~~-------~~~~l~llViDEah~~-- 225 (643)
...+.-+ |++|+++.+..+..+++..+ .+||++||..- |.+.+ ..+.+.+.||||+|.+
T Consensus 138 ~pvy~~L-GLsvg~i~~~~~~~err~aY------~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLI 210 (870)
T CHL00122 138 GQIYRFL-GLTVGLIQEGMSSEERKKNY------LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILI 210 (870)
T ss_pred HHHHHHc-CCceeeeCCCCChHHHHHhc------CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhee
Confidence 8765544 89999999888887776665 37999999863 33332 2356789999999831
Q ss_pred --------------------------------------------------chhHHHHH---------------------H
Q 006476 226 --------------------------------------------------GVKQKEKI---------------------A 234 (643)
Q Consensus 226 --------------------------------------------------g~~~~~~l---------------------~ 234 (643)
|....+.+ +
T Consensus 211 DeArTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~ 290 (870)
T CHL00122 211 DEARTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALK 290 (870)
T ss_pred ccCCCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence 00000000 0
Q ss_pred h---cCC-------------------------------------------------------------CceEEEeccCCC
Q 006476 235 S---FKI-------------------------------------------------------------SVDVLTLSATPI 250 (643)
Q Consensus 235 ~---~~~-------------------------------------------------------------~~~vl~lSATp~ 250 (643)
. +.. -.++.+||+|..
T Consensus 291 A~~lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~ 370 (870)
T CHL00122 291 AKELFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAK 370 (870)
T ss_pred HHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCH
Confidence 0 000 022444555543
Q ss_pred hHhHHHHHhcCCCcceeeCCCCC---ccceeEEEccCCH---HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC
Q 006476 251 PRTLYLALTGFRDASLISTPPPE---RLPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 324 (643)
Q Consensus 251 ~~~~~~~~~~~~~~~~i~~~~~~---~~~v~~~~~~~~~---~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~ 324 (643)
.... .+....+..++.+|+.. +......+..... ..+.+.+.+....|.+|||.+.+++..+.++..|...
T Consensus 371 te~~--Ef~~iY~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~- 447 (870)
T CHL00122 371 TEEL--EFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEY- 447 (870)
T ss_pred HHHH--HHHHHhCCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHc-
Confidence 2221 22223344455554432 2222222222222 2355555566678899999999999999999999998
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccccccccc
Q 006476 325 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 369 (643)
Q Consensus 325 p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip 369 (643)
+++..++++.-...+++.-+-.-....-.|.|||++++||.||.
T Consensus 448 -gi~h~vLNAk~~~~~~EA~IIA~AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 448 -RLPHQLLNAKPENVRRESEIVAQAGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred -CCccceeeCCCccchhHHHHHHhcCCCCcEEEeccccCCCcCee
Confidence 88889999874222333333222333457999999999999974
No 129
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.3e-15 Score=171.94 Aligned_cols=307 Identities=17% Similarity=0.202 Sum_probs=204.5
Q ss_pred HHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHH
Q 006476 81 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 160 (643)
Q Consensus 81 ~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~ 160 (643)
.-.......|++.|.-+--.+. ...|..+.||-|||+++.+|++-....|+.|-|++..--||.--++.+.
T Consensus 70 A~~R~lG~r~ydVQliGglvLh---------~G~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg 140 (925)
T PRK12903 70 ATKRVLGKRPYDVQIIGGIILD---------LGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMG 140 (925)
T ss_pred HHHHHhCCCcCchHHHHHHHHh---------cCCeeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHH
Confidence 3445667799999988754332 2258999999999999999998887889999999999999999888888
Q ss_pred HHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhh-----hccc-------ccCccceEEeeccccc---
Q 006476 161 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRV-------VYNNLGLLVVDEEQRF--- 225 (643)
Q Consensus 161 ~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L-----~~~~-------~~~~l~llViDEah~~--- 225 (643)
..+.- .|++|+++....+..+++..+ .+||++||..-| .+.+ ..+.+.+.||||+|.+
T Consensus 141 ~vy~f-LGLsvG~i~~~~~~~~rr~aY------~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILID 213 (925)
T PRK12903 141 KVFNF-LGLSVGINKANMDPNLKREAY------ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILID 213 (925)
T ss_pred HHHHH-hCCceeeeCCCCChHHHHHhc------cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeec
Confidence 75544 489999999887777766655 389999998643 3322 1356788999999841
Q ss_pred ---------ch--------hH-HHHHHhcCC-------C-----------------------------------------
Q 006476 226 ---------GV--------KQ-KEKIASFKI-------S----------------------------------------- 239 (643)
Q Consensus 226 ---------g~--------~~-~~~l~~~~~-------~----------------------------------------- 239 (643)
|. .. ...+..+.. .
T Consensus 214 EArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A 293 (925)
T PRK12903 214 EAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRA 293 (925)
T ss_pred ccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHH
Confidence 00 00 000010000 0
Q ss_pred --------------------------------------------------------------------ceEEEeccCCCh
Q 006476 240 --------------------------------------------------------------------VDVLTLSATPIP 251 (643)
Q Consensus 240 --------------------------------------------------------------------~~vl~lSATp~~ 251 (643)
.++-+||+|...
T Consensus 294 ~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~t 373 (925)
T PRK12903 294 HKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKT 373 (925)
T ss_pred HHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHH
Confidence 122334444322
Q ss_pred HhHHHHHhcCCCcceeeCCCCCc---cceeEEEccCCH---HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC
Q 006476 252 RTLYLALTGFRDASLISTPPPER---LPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 325 (643)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~~~~~---~~v~~~~~~~~~---~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p 325 (643)
.... +....+..++.+|+... ......+..... ..+.+.+.+....|.+|||.|.+++..+.++..|...
T Consensus 374 e~~E--f~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~-- 449 (925)
T PRK12903 374 EEQE--FIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEA-- 449 (925)
T ss_pred HHHH--HHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC--
Confidence 2111 11223334444443221 111111111111 2344555555677889999999999999999999998
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcC-CceEEEecccccccccccCCC--------EEEEecCCCCCHHHHHHHHhccCC
Q 006476 326 GVDIAIAHGQQYSRQLEETMEKFAQG-AIKILICTNIVESGLDIQNAN--------TIIVQDVQQFGLAQLYQLRGRVGR 396 (643)
Q Consensus 326 ~~~v~~~hg~~~~~~r~~v~~~F~~g-~~~ILVaT~i~~~GiDip~v~--------~VI~~d~p~~s~~~~~Qr~GR~GR 396 (643)
+++..++++.-.. ++.-+-. ..| .-.|.|||++++||.||.--. +||....+. |..--.|.+||+||
T Consensus 450 gi~h~vLNAk~~e--~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerhe-SrRIDnQLrGRaGR 525 (925)
T PRK12903 450 NIPHTVLNAKQNA--REAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAE-SRRIDNQLRGRSGR 525 (925)
T ss_pred CCCceeecccchh--hHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCc-hHHHHHHHhccccc
Confidence 8888899987543 3333333 344 457999999999999997322 788776665 55556799999999
Q ss_pred CCCceEEEEEecCCC
Q 006476 397 ADKEAHAYLFYPDKS 411 (643)
Q Consensus 397 ~g~~g~a~~l~~~~~ 411 (643)
.|.+|.+-+|++-++
T Consensus 526 QGDpGss~f~lSLeD 540 (925)
T PRK12903 526 QGDVGESRFFISLDD 540 (925)
T ss_pred CCCCCcceEEEecch
Confidence 999999988887544
No 130
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.73 E-value=1.7e-16 Score=153.78 Aligned_cols=174 Identities=26% Similarity=0.237 Sum_probs=127.8
Q ss_pred cCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC--CeEEEEeccHHHHHHHHHHHHHH
Q 006476 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSER 162 (643)
Q Consensus 85 ~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g--~~vlil~Pt~~La~Q~~~~~~~~ 162 (643)
.++..++|+|.++++.+... ...++++++||+|||.++..+++.....+ ..++|++|+..++.|++.++...
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~------~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSG------LRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcC------CCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 45679999999999988651 16899999999999999999988887765 78999999999999999999876
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEeecccccch-hH----HHH
Q 006476 163 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGV-KQ----KEK 232 (643)
Q Consensus 163 ~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViDEah~~g~-~~----~~~ 232 (643)
+..........+.+... ...+..+..+..+++++|++.+.+. .....++++|+||+|.+.. .. ...
T Consensus 78 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 78 GPSLGLKVVGLYGGDSK----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred hccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 54432244555554322 2345555666559999999887653 2345688999999999864 22 223
Q ss_pred HHhcCCCceEEEeccCCChHhHHHHHhcCCCcceee
Q 006476 233 IASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268 (643)
Q Consensus 233 l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~ 268 (643)
+.......+++++||||..........+..+...+.
T Consensus 154 ~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~ 189 (201)
T smart00487 154 LKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFID 189 (201)
T ss_pred HHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEe
Confidence 344456899999999998777666666655444443
No 131
>COG4889 Predicted helicase [General function prediction only]
Probab=99.73 E-value=6.5e-16 Score=170.19 Aligned_cols=350 Identities=20% Similarity=0.267 Sum_probs=204.6
Q ss_pred CCCCChhHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHH
Q 006476 72 PYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 151 (643)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~L 151 (643)
.|-|..++..+.-.-|+.|+|+|+.||+..+.++....+|+ +.+..|+|||..++...-.. . ..++|+|||+..|
T Consensus 144 ~f~p~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGk---LIMAcGTGKTfTsLkisEal-a-~~~iL~LvPSIsL 218 (1518)
T COG4889 144 IFDPTELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGK---LIMACGTGKTFTSLKISEAL-A-AARILFLVPSISL 218 (1518)
T ss_pred hcCccccccccccCCCCCCChhHHHHHHHHHhhcccccCCc---EEEecCCCccchHHHHHHHH-h-hhheEeecchHHH
Confidence 34444467777777789999999999999999887655554 33456999999987654333 2 3789999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeCCCChH-----------------HHHHHHHHH----hcCCceEEEechHhhhc---
Q 006476 152 AKQHFDVVSERFSKYPDIKVGLLSRFQSKA-----------------EKEEHLDMI----KHGHLNIIVGTHSLLGS--- 207 (643)
Q Consensus 152 a~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~-----------------~~~~~~~~l----~~g~~dIiI~T~~~L~~--- 207 (643)
..|..+++... ... .++...+++..... ..+.++..+ +....-||++|++.+..
T Consensus 219 LsQTlrew~~~-~~l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~e 296 (1518)
T COG4889 219 LSQTLREWTAQ-KEL-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKE 296 (1518)
T ss_pred HHHHHHHHhhc-cCc-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHH
Confidence 99999888752 223 36665555543211 111122211 12235789999887642
Q ss_pred --ccccCccceEEeeccccc-ch----hHHHHHHhcC-----CCceEEEeccCCChHhHHH-HHhcCCCcceeeCCC---
Q 006476 208 --RVVYNNLGLLVVDEEQRF-GV----KQKEKIASFK-----ISVDVLTLSATPIPRTLYL-ALTGFRDASLISTPP--- 271 (643)
Q Consensus 208 --~~~~~~l~llViDEah~~-g~----~~~~~l~~~~-----~~~~vl~lSATp~~~~~~~-~~~~~~~~~~i~~~~--- 271 (643)
..-+..+++||+|||||. |. .....+.+.. ...+.+.|||||.--.... ....-.+..+.+...
T Consensus 297 AQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~ 376 (1518)
T COG4889 297 AQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELT 376 (1518)
T ss_pred HHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhh
Confidence 345788999999999983 22 1111111111 2234678999984211100 000000000100000
Q ss_pred ----CCc------------cceeEEEccCCHHHHHHHHHH-----------------------HHhcCC-----------
Q 006476 272 ----PER------------LPIKTHLSAFSKEKVISAIKY-----------------------ELDRGG----------- 301 (643)
Q Consensus 272 ----~~~------------~~v~~~~~~~~~~~~~~~i~~-----------------------~l~~~~----------- 301 (643)
..+ ...+..+...++..+...+.. ...+.|
T Consensus 377 fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d 456 (1518)
T COG4889 377 FGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKAD 456 (1518)
T ss_pred hchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCC
Confidence 000 011111111111111111110 001111
Q ss_pred -----eEEEEecCccChHHHH-----------HHHHhhCCCCcEEEEe--CCCCHHHHHHHHH---HHhcCCceEEEecc
Q 006476 302 -----QVFYVLPRIKGLEEPM-----------DFLQQAFPGVDIAIAH--GQQYSRQLEETME---KFAQGAIKILICTN 360 (643)
Q Consensus 302 -----qvlvf~~~~~~~e~l~-----------~~L~~~~p~~~v~~~h--g~~~~~~r~~v~~---~F~~g~~~ILVaT~ 360 (643)
+.+-||.++++...++ +.|.+.++++.+.+-| |.|...+|.+.+. .|...+++||-...
T Consensus 457 ~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaR 536 (1518)
T COG4889 457 TAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNAR 536 (1518)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccch
Confidence 2344666655433333 3445556777777766 7788888855543 35667899999999
Q ss_pred cccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCC---CceEEEEEe-cCCCCCc----------HHHHHHHHHHHH
Q 006476 361 IVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD---KEAHAYLFY-PDKSLLS----------DQALERLAALEE 426 (643)
Q Consensus 361 i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g---~~g~a~~l~-~~~~~~~----------~~~~~rl~~i~~ 426 (643)
++++|+|+|.++.||.+++.. ++-+.+|.+||+.|-. +.||.++=+ -++.+.. +...+-+.+++.
T Consensus 537 cLSEGVDVPaLDsViFf~pr~-smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VWqVlnALRS 615 (1518)
T COG4889 537 CLSEGVDVPALDSVIFFDPRS-SMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVWQVLKALRS 615 (1518)
T ss_pred hhhcCCCccccceEEEecCch-hHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHHHHHHHHHh
Confidence 999999999999999999887 9999999999999972 346666522 1222211 234455677766
Q ss_pred Hhh
Q 006476 427 CRE 429 (643)
Q Consensus 427 ~~~ 429 (643)
+.+
T Consensus 616 hD~ 618 (1518)
T COG4889 616 HDE 618 (1518)
T ss_pred cCH
Confidence 654
No 132
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.72 E-value=1.6e-15 Score=170.82 Aligned_cols=319 Identities=16% Similarity=0.192 Sum_probs=195.8
Q ss_pred CCCHHHHHHHHHhHHhhccCC---CCCcEEEEccCCCchHHHHHHHHHHHHHC--C-----CeEEEEeccHHHHHHHHHH
Q 006476 89 EPTPDQKKAFLDVERDLTERE---TPMDRLICGDVGFGKTEVALRAIFCVVSA--G-----KQAMVLAPTIVLAKQHFDV 158 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~---~~~d~li~a~TGsGKT~~~l~~i~~~~~~--g-----~~vlil~Pt~~La~Q~~~~ 158 (643)
.++|+|.+.+.-+.+.+.... ....+|+.-..|+|||+..+..+...+.. + .+.+|++|. .|...|+++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 789999999999988775431 45678899999999999976666555543 4 578999996 688999999
Q ss_pred HHHHhcCCCCceEEEEeCCCCh--HHHHHHHHH-HhcCCceEEEechHhhh---cccccCccceEEeecccccch---hH
Q 006476 159 VSERFSKYPDIKVGLLSRFQSK--AEKEEHLDM-IKHGHLNIIVGTHSLLG---SRVVYNNLGLLVVDEEQRFGV---KQ 229 (643)
Q Consensus 159 ~~~~~~~~~~i~v~~l~g~~~~--~~~~~~~~~-l~~g~~dIiI~T~~~L~---~~~~~~~l~llViDEah~~g~---~~ 229 (643)
|.++.... .+....+++.... .....++.. -..-..-|.+-+.+.+. +.+....++++|+||.|+.-. ..
T Consensus 317 F~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~ 395 (776)
T KOG0390|consen 317 FGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLT 395 (776)
T ss_pred HHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHH
Confidence 99876642 3666666664442 001111100 01112345566666664 345568899999999999743 34
Q ss_pred HHHHHhcCCCceEEEeccCCChHhHHHHH--hcCCCcceeeCCC------------------------------------
Q 006476 230 KEKIASFKISVDVLTLSATPIPRTLYLAL--TGFRDASLISTPP------------------------------------ 271 (643)
Q Consensus 230 ~~~l~~~~~~~~vl~lSATp~~~~~~~~~--~~~~~~~~i~~~~------------------------------------ 271 (643)
...|.++....+ |++|+||..+.+.... ..+-.+..+.+..
T Consensus 396 ~kaL~~l~t~rR-VLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t 474 (776)
T KOG0390|consen 396 LKALSSLKTPRR-VLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELT 474 (776)
T ss_pred HHHHHhcCCCce-EEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHH
Confidence 566777755544 5699999875543221 1111111111100
Q ss_pred ------------CCccceeE-EEccCC----HHHHHHHHHHH--------------------------------------
Q 006476 272 ------------PERLPIKT-HLSAFS----KEKVISAIKYE-------------------------------------- 296 (643)
Q Consensus 272 ------------~~~~~v~~-~~~~~~----~~~~~~~i~~~-------------------------------------- 296 (643)
....|... ++...+ ...+...+...
T Consensus 475 ~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~ 554 (776)
T KOG0390|consen 475 NKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEKEKA 554 (776)
T ss_pred HhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccccccccc
Confidence 00001000 000000 00001111000
Q ss_pred --------------------------------H-hcCCeEEEEecCc---cChHHHHHHHHhhCCCCcEEEEeCCCCHHH
Q 006476 297 --------------------------------L-DRGGQVFYVLPRI---KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQ 340 (643)
Q Consensus 297 --------------------------------l-~~~~qvlvf~~~~---~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~ 340 (643)
+ .-..++++|+--+ ....++.+.+...- |+.+..+||+|+..+
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~-g~~~~rLdG~~~~~q 633 (776)
T KOG0390|consen 555 FKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWR-GYEVLRLDGKTSIKQ 633 (776)
T ss_pred ccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhc-CceEEEEcCCCchHH
Confidence 0 0000111111111 12222233333332 789999999999999
Q ss_pred HHHHHHHHhcCC---ceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCce--EEEEEecCCCC
Q 006476 341 LEETMEKFAQGA---IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA--HAYLFYPDKSL 412 (643)
Q Consensus 341 r~~v~~~F~~g~---~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g--~a~~l~~~~~~ 412 (643)
|+.+++.|.+.. .-.|.+|.+.+.||++-+++.||.+|.++ +++.-.|.++||-|.|++- ++|.|++....
T Consensus 634 Rq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dW-NPa~d~QAmaR~~RdGQKk~v~iYrLlatGti 709 (776)
T KOG0390|consen 634 RQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDW-NPAVDQQAMARAWRDGQKKPVYIYRLLATGTI 709 (776)
T ss_pred HHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCC-CchhHHHHHHHhccCCCcceEEEEEeecCCCc
Confidence 999999998753 33666778999999999999999999995 9999999999999999765 45557776654
No 133
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.71 E-value=1.3e-16 Score=177.99 Aligned_cols=150 Identities=21% Similarity=0.190 Sum_probs=106.0
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH--CCCeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~--~g~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
|.|-.||.+.+..+- ++...+|+|||.+|||.+...++-+.+. +.+-|++++||++|+.|...++..+|..
T Consensus 510 F~Pd~WQ~elLDsvD-------r~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~ 582 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVD-------RNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDT 582 (1330)
T ss_pred cCCcHHHHHHhhhhh-------cccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhcc
Confidence 688899999987663 3578999999999999997777766654 4678999999999999999999988843
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc--------cccCccceEEeecccccchhH----HHHH
Q 006476 166 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR--------VVYNNLGLLVVDEEQRFGVKQ----KEKI 233 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~--------~~~~~l~llViDEah~~g~~~----~~~l 233 (643)
-.-.+...+.|..+..-+...| .++|+|+-|+.+... .....+.++|+||+|..|... ++.+
T Consensus 583 ~t~~rg~sl~g~ltqEYsinp~------nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eql 656 (1330)
T KOG0949|consen 583 KTFLRGVSLLGDLTQEYSINPW------NCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQL 656 (1330)
T ss_pred CccccchhhHhhhhHHhcCCch------hceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHH
Confidence 2112333333322111110111 489999999877532 123688999999999987643 3333
Q ss_pred HhcCCCceEEEeccCCCh
Q 006476 234 ASFKISVDVLTLSATPIP 251 (643)
Q Consensus 234 ~~~~~~~~vl~lSATp~~ 251 (643)
-.+ ....+|++|||..+
T Consensus 657 l~l-i~CP~L~LSATigN 673 (1330)
T KOG0949|consen 657 LLL-IPCPFLVLSATIGN 673 (1330)
T ss_pred HHh-cCCCeeEEecccCC
Confidence 333 56789999999744
No 134
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=6.9e-15 Score=166.76 Aligned_cols=127 Identities=20% Similarity=0.163 Sum_probs=101.2
Q ss_pred HHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 82 ~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
-.......|.+.|..+--.+. ...|..+.||-|||+++.+|++-....|+.|-|++++..||..-++.+..
T Consensus 78 ~~R~lG~r~ydVQliGgl~Lh---------~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~ 148 (939)
T PRK12902 78 SKRVLGMRHFDVQLIGGMVLH---------EGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQ 148 (939)
T ss_pred HHHHhCCCcchhHHHhhhhhc---------CCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHH
Confidence 334566788999988754442 33599999999999999999998888999999999999999999999887
Q ss_pred HhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhh-----hccc-------ccCccceEEeecccc
Q 006476 162 RFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRV-------VYNNLGLLVVDEEQR 224 (643)
Q Consensus 162 ~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L-----~~~~-------~~~~l~llViDEah~ 224 (643)
.+.-+ |++|+++.+..+..+++..+ .+||++||+.-+ .+.+ ..+.+.+.||||+|.
T Consensus 149 vy~~L-GLtvg~i~~~~~~~err~aY------~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 149 VHRFL-GLSVGLIQQDMSPEERKKNY------ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDS 216 (939)
T ss_pred HHHHh-CCeEEEECCCCChHHHHHhc------CCCeEEecCCcccccchhhhhcccccccccCccceEEEecccc
Confidence 55444 89999998888777766654 489999998765 3322 236778999999995
No 135
>PF03461 TRCF: TRCF domain; InterPro: IPR005118 This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the transcription-repair-coupling factor (TRCF) which releases RNAP and the truncated transcript.; GO: 0003684 damaged DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0006281 DNA repair; PDB: 2QSR_A 2EYQ_A.
Probab=99.70 E-value=4.6e-17 Score=141.62 Aligned_cols=90 Identities=24% Similarity=0.389 Sum_probs=72.9
Q ss_pred eeccCCCCCccccCCCCCchHHHHHHHHhcccCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHhhhcCcceEeecC
Q 006476 493 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASG 572 (643)
Q Consensus 493 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (643)
+++++++||+.||++..+|+++|+|++.+ .+.+++.++..||.||||++|++|++|+.+++||.+|+++||.+|..++
T Consensus 1 dl~~~a~IP~~YI~d~~~Rl~~Yrrl~~~--~~~~el~~l~~El~DRFG~~P~ev~~L~~~~~lk~~a~~~gi~~i~~~~ 78 (101)
T PF03461_consen 1 DLPVDAYIPEDYIPDDDERLELYRRLASA--ESEEELEDLREELIDRFGPLPEEVENLLELARLKILARKLGIESIKQKG 78 (101)
T ss_dssp E-SS--S--TTTS--HHHHHHHHHHHHC----SHHHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHHHHHCTECEEEEET
T ss_pred CCCccccCChHHcCChHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHCCCcEEEecC
Confidence 57899999999999999999999999987 6788999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCHH
Q 006476 573 KMVGMKTNMNKK 584 (643)
Q Consensus 573 ~~~~~~~~~~~~ 584 (643)
+.+.+.+.....
T Consensus 79 ~~i~i~~~~~~~ 90 (101)
T PF03461_consen 79 NSIYITFSKNKK 90 (101)
T ss_dssp TEEEEEE-TTHH
T ss_pred CEEEEEECCCCC
Confidence 999999875543
No 136
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.70 E-value=7e-17 Score=155.78 Aligned_cols=154 Identities=23% Similarity=0.311 Sum_probs=105.7
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCC
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 167 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 167 (643)
++|+|+|.+|+..+.+.+.........++.+|||||||.+++..+..... +++|++|+..|+.|+.+.+.......
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---~~l~~~p~~~l~~Q~~~~~~~~~~~~- 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---KVLIVAPNISLLEQWYDEFDDFGSEK- 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---EEEEEESSHHHHHHHHHHHHHHSTTS-
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---ceeEecCHHHHHHHHHHHHHHhhhhh-
Confidence 57999999999999987743214688999999999999999876666644 99999999999999999996533221
Q ss_pred CceEEEE-----------eCCCChHHHHHHHHHHhcCCceEEEechHhhhccc----------------ccCccceEEee
Q 006476 168 DIKVGLL-----------SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV----------------VYNNLGLLVVD 220 (643)
Q Consensus 168 ~i~v~~l-----------~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~----------------~~~~l~llViD 220 (643)
...... ........ ..........++++.|.+.+.... .....++||+|
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 78 -YNFFEKSIKPAYDSKEFISIQDDIS---DKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp -EEEEE--GGGCCE-SEEETTTTEEE---HHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEE
T ss_pred -hhhcccccccccccccccccccccc---cccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEe
Confidence 111111 00001111 112233456789999988776432 12467899999
Q ss_pred cccccchhH-HHHHHhcCCCceEEEeccCCC
Q 006476 221 EEQRFGVKQ-KEKIASFKISVDVLTLSATPI 250 (643)
Q Consensus 221 Eah~~g~~~-~~~l~~~~~~~~vl~lSATp~ 250 (643)
|||++.... ...+.. .....+|+|||||.
T Consensus 154 EaH~~~~~~~~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHHYPSDSSYREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp TGGCTHHHHHHHHHHH-SSCCEEEEEESS-S
T ss_pred hhhhcCCHHHHHHHHc-CCCCeEEEEEeCcc
Confidence 999997766 555544 57788999999985
No 137
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.67 E-value=4.3e-14 Score=168.39 Aligned_cols=87 Identities=21% Similarity=0.275 Sum_probs=69.3
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEeccHHHHHHHHHH----HHH
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDV----VSE 161 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~Pt~~La~Q~~~~----~~~ 161 (643)
.|+++|-|.+.+..+.+.+.+ +..+++.|+||+|||++|++|++... .++++++|-++|+.|..|.... +++
T Consensus 255 ~~e~R~~Q~~m~~~v~~~l~~---~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~ 331 (928)
T PRK08074 255 KYEKREGQQEMMKEVYTALRD---SEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEKDIPLLQK 331 (928)
T ss_pred CCcCCHHHHHHHHHHHHHHhc---CCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHhhHHHHHH
Confidence 379999999999999887743 57789999999999999999987644 4689999999999999998763 343
Q ss_pred HhcCCCCceEEEEeCCC
Q 006476 162 RFSKYPDIKVGLLSRFQ 178 (643)
Q Consensus 162 ~~~~~~~i~v~~l~g~~ 178 (643)
.+ ++ .++++++.|..
T Consensus 332 ~~-~~-~~~~~~lKGr~ 346 (928)
T PRK08074 332 IF-PF-PVEAALLKGRS 346 (928)
T ss_pred Hc-CC-CceEEEEEccc
Confidence 22 33 36777776644
No 138
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.67 E-value=4.4e-16 Score=141.62 Aligned_cols=116 Identities=29% Similarity=0.554 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccccccc
Q 006476 288 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 367 (643)
Q Consensus 288 ~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiD 367 (643)
.+.+.+.+....+++++|||++...++.+++.|... +..+.++||+++..+|..+++.|.++...||+||+++++|+|
T Consensus 16 ~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d 93 (131)
T cd00079 16 ALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKP--GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGID 93 (131)
T ss_pred HHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhc--CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcC
Confidence 344455544446789999999999999999999884 788999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEE
Q 006476 368 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLF 406 (643)
Q Consensus 368 ip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l 406 (643)
+|++++||+++.+. +...+.|++||+||.|+.|.++++
T Consensus 94 ~~~~~~vi~~~~~~-~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 94 LPNVSVVINYDLPW-SPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hhhCCEEEEeCCCC-CHHHheecccccccCCCCceEEeC
Confidence 99999999999985 999999999999999999988764
No 139
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.65 E-value=6.9e-15 Score=167.50 Aligned_cols=318 Identities=20% Similarity=0.285 Sum_probs=212.0
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH-HHHC--------CCeEEEEeccHHHHHHHHHHH
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC-VVSA--------GKQAMVLAPTIVLAKQHFDVV 159 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~-~~~~--------g~~vlil~Pt~~La~Q~~~~~ 159 (643)
.++.+|++.+.++- -+ +.-.-+-|+|.+.|-|||++.+-.+.. +..+ ....+|+||. .|+--|..++
T Consensus 975 ~LRkYQqEGVnWLa-FL--nky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~ 1050 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLA-FL--NKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEV 1050 (1549)
T ss_pred HHHHHHHhccHHHH-HH--HHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHH
Confidence 67899999998763 12 122456799999999999997543332 2222 2358999997 6888899999
Q ss_pred HHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccccc---CccceEEeecccccchh---HHHHH
Q 006476 160 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVY---NNLGLLVVDEEQRFGVK---QKEKI 233 (643)
Q Consensus 160 ~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~---~~l~llViDEah~~g~~---~~~~l 233 (643)
.+ |.++ ++|....| .+.++.......+ +.+|+|+.+..+.+++.+ .++.++|+||-|-+-.. .....
T Consensus 1051 ~k-f~pf--L~v~~yvg--~p~~r~~lR~q~~--~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kav 1123 (1549)
T KOG0392|consen 1051 KK-FFPF--LKVLQYVG--PPAERRELRDQYK--NANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAV 1123 (1549)
T ss_pred HH-hcch--hhhhhhcC--ChHHHHHHHhhcc--ccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHHH
Confidence 87 5444 67777777 4555555544443 369999999999876543 67889999999987432 23455
Q ss_pred HhcCCCceEEEeccCCChHhHHHHHh-------cC------------------CCcce----------------------
Q 006476 234 ASFKISVDVLTLSATPIPRTLYLALT-------GF------------------RDASL---------------------- 266 (643)
Q Consensus 234 ~~~~~~~~vl~lSATp~~~~~~~~~~-------~~------------------~~~~~---------------------- 266 (643)
++++.+. .+.+|+||+.+.....++ |+ +++..
T Consensus 1124 kqL~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF 1202 (1549)
T KOG0392|consen 1124 KQLRANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPF 1202 (1549)
T ss_pred HHHhhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHH
Confidence 6665544 456999997533211110 00 00000
Q ss_pred ----------eeCCCCCccceeEEEccC----------------------------------------------------
Q 006476 267 ----------ISTPPPERLPIKTHLSAF---------------------------------------------------- 284 (643)
Q Consensus 267 ----------i~~~~~~~~~v~~~~~~~---------------------------------------------------- 284 (643)
-..||... +.|+.+.
T Consensus 1203 ~LRRlKedVL~DLPpKII---QDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpa 1279 (1549)
T KOG0392|consen 1203 LLRRLKEDVLKDLPPKII---QDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPA 1279 (1549)
T ss_pred HHHHHHHHHHhhCChhhh---hheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcc
Confidence 00011100 0000000
Q ss_pred --------------------CH-------HHHHHHHHHHHh------------------cCCeEEEEecCccChHHHHHH
Q 006476 285 --------------------SK-------EKVISAIKYELD------------------RGGQVFYVLPRIKGLEEPMDF 319 (643)
Q Consensus 285 --------------------~~-------~~~~~~i~~~l~------------------~~~qvlvf~~~~~~~e~l~~~ 319 (643)
+. .....++...+. .+++++|||.-+..++-+.+-
T Consensus 1280 Lvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekD 1359 (1549)
T KOG0392|consen 1280 LVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKD 1359 (1549)
T ss_pred eeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHH
Confidence 00 001222222221 235799999998888887765
Q ss_pred H-HhhCCCCcEEEEeCCCCHHHHHHHHHHHhcC-CceEEE-ecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCC
Q 006476 320 L-QQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIKILI-CTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 396 (643)
Q Consensus 320 L-~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g-~~~ILV-aT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR 396 (643)
| +..+|.+....+.|..++.+|.++.++|.++ .++||+ +|.+.+-|+|+.++++||.++.++ ++..=.|.+-||.|
T Consensus 1360 L~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDW-NPMrDLQAMDRAHR 1438 (1549)
T KOG0392|consen 1360 LFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDW-NPMRDLQAMDRAHR 1438 (1549)
T ss_pred HhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCC-CchhhHHHHHHHHh
Confidence 5 4556888888999999999999999999998 788776 556999999999999999999985 88888999999999
Q ss_pred CCCc--eEEEEEecCCCCCcHHHHHHHHHHHHH
Q 006476 397 ADKE--AHAYLFYPDKSLLSDQALERLAALEEC 427 (643)
Q Consensus 397 ~g~~--g~a~~l~~~~~~~~~~~~~rl~~i~~~ 427 (643)
.|++ -.+|.+++.... .|++..++.+
T Consensus 1439 IGQKrvVNVyRlItrGTL-----EEKVMgLQkF 1466 (1549)
T KOG0392|consen 1439 IGQKRVVNVYRLITRGTL-----EEKVMGLQKF 1466 (1549)
T ss_pred hcCceeeeeeeehhcccH-----HHHHhhHHHH
Confidence 9876 457888887753 3344455544
No 140
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.64 E-value=1.5e-14 Score=159.07 Aligned_cols=312 Identities=18% Similarity=0.261 Sum_probs=207.4
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHH--HHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL--RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l--~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
.++-++|.-.++++.- | ...+.+.|+..+.|-|||.+++ ++.+......+.-||+||...|- .|.++|.+ |+
T Consensus 398 i~LkdYQlvGvNWL~L-l--yk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTle-NWlrEf~k-wC- 471 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLL-L--YKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLE-NWLREFAK-WC- 471 (941)
T ss_pred CcccchhhhhHHHHHH-H--HHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHH-HHHHHHHH-hC-
Confidence 3688999999998753 2 2446888999999999998854 34444444456789999987664 46777775 54
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHhcC--CceEEEechHhhhc---c---cccCccceEEeecccccch---hHHHHHH
Q 006476 166 YPDIKVGLLSRFQSKAEKEEHLDMIKHG--HLNIIVGTHSLLGS---R---VVYNNLGLLVVDEEQRFGV---KQKEKIA 234 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~~~~~~~~~l~~g--~~dIiI~T~~~L~~---~---~~~~~l~llViDEah~~g~---~~~~~l~ 234 (643)
|.++|..++| +..++++....+..+ .+||+++|+.+... + +.-.+++++|+||+|.+-. .....|.
T Consensus 472 -Psl~Ve~YyG--Sq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM 548 (941)
T KOG0389|consen 472 -PSLKVEPYYG--SQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLM 548 (941)
T ss_pred -CceEEEeccC--cHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhc
Confidence 4699999999 557777777777766 79999999987642 1 2225678999999998633 3334455
Q ss_pred hcCCCceEEEeccCCChHhHHHHHhc------------CCCccee-----------------------------------
Q 006476 235 SFKISVDVLTLSATPIPRTLYLALTG------------FRDASLI----------------------------------- 267 (643)
Q Consensus 235 ~~~~~~~vl~lSATp~~~~~~~~~~~------------~~~~~~i----------------------------------- 267 (643)
.++.+ ..|++|+||-.+.+...++. ..+...+
T Consensus 549 ~I~An-~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR 627 (941)
T KOG0389|consen 549 SINAN-FRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRR 627 (941)
T ss_pred ccccc-ceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 55444 45679999865433211110 0000000
Q ss_pred -------eCCCCCccceeEEEc------------------------------------------------cCCHHH----
Q 006476 268 -------STPPPERLPIKTHLS------------------------------------------------AFSKEK---- 288 (643)
Q Consensus 268 -------~~~~~~~~~v~~~~~------------------------------------------------~~~~~~---- 288 (643)
..||....-...... .++.+.
T Consensus 628 ~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~m 707 (941)
T KOG0389|consen 628 LKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKM 707 (941)
T ss_pred HHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHH
Confidence 001110000000000 000000
Q ss_pred ----------------------------------------------------------HHHHHHHHHhcCCeEEEEecCc
Q 006476 289 ----------------------------------------------------------VISAIKYELDRGGQVFYVLPRI 310 (643)
Q Consensus 289 ----------------------------------------------------------~~~~i~~~l~~~~qvlvf~~~~ 310 (643)
+...+......|.+|++|..-.
T Consensus 708 ak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFT 787 (941)
T KOG0389|consen 708 AKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFT 787 (941)
T ss_pred HHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHH
Confidence 1111111223456777776665
Q ss_pred cChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCC--ceEEEecccccccccccCCCEEEEecCCCCCHHHHH
Q 006476 311 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA--IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 388 (643)
Q Consensus 311 ~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~--~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~ 388 (643)
...+-+.-.|..+ +++...+.|...-..|+.++..|...+ .-.|++|-..+-|||+..+|+||++|.+ |++-.=.
T Consensus 788 qmLDILE~~L~~l--~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~d-FNP~dD~ 864 (941)
T KOG0389|consen 788 QMLDILEVVLDTL--GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDID-FNPYDDK 864 (941)
T ss_pred HHHHHHHHHHHhc--CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecC-CCCcccc
Confidence 5566666666666 788999999999999999999998764 3478899999999999999999999998 5887778
Q ss_pred HHHhccCCCCC--ceEEEEEecCCCC
Q 006476 389 QLRGRVGRADK--EAHAYLFYPDKSL 412 (643)
Q Consensus 389 Qr~GR~GR~g~--~g~a~~l~~~~~~ 412 (643)
|.--||.|.|+ +-.+|.+++...+
T Consensus 865 QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 865 QAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred hhHHHHHhhCCcceeEEEEEEecCcH
Confidence 88888888875 4678889998754
No 141
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.63 E-value=8.3e-16 Score=127.57 Aligned_cols=77 Identities=34% Similarity=0.632 Sum_probs=72.9
Q ss_pred HHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCC
Q 006476 319 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 398 (643)
Q Consensus 319 ~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g 398 (643)
+|+.. ++++..+||++++.+|+.+++.|.+++.+|||||+++++|+|+|++++||+++.|. +..+|.|++||+||.|
T Consensus 2 ~L~~~--~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~-~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKK--GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPW-SPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHT--TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSES-SHHHHHHHHTTSSTTT
T ss_pred ChHHC--CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCC-CHHHHHHHhhcCCCCC
Confidence 45555 89999999999999999999999999999999999999999999999999999996 9999999999999986
No 142
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.62 E-value=7.1e-13 Score=149.34 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=63.8
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH--CCCeEEEEeccHHHHHHHHHHHHHHhc-CC--CC
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFS-KY--PD 168 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~--~g~~vlil~Pt~~La~Q~~~~~~~~~~-~~--~~ 168 (643)
|.+.+..+.+.+.+ ++.+++.|+||+|||++|+.|++..+. .+++++|++||++|+.|+++.+.. +. .. ..
T Consensus 2 Q~~~~~~i~~al~~---~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~-l~~~~l~~~ 77 (636)
T TIGR03117 2 QALFYLNCLTSLRQ---KRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELER-LTAEGLAGP 77 (636)
T ss_pred HHHHHHHHHHHHhc---CCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHH-HHHhhcCCC
Confidence 88888888877643 678999999999999999999987654 478999999999999999998765 44 21 13
Q ss_pred ceEEEEeCCC
Q 006476 169 IKVGLLSRFQ 178 (643)
Q Consensus 169 i~v~~l~g~~ 178 (643)
+++..+.|..
T Consensus 78 i~~~~lkGr~ 87 (636)
T TIGR03117 78 VQAGFFPGSQ 87 (636)
T ss_pred eeEEEEECCc
Confidence 6666655543
No 143
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.60 E-value=1.3e-14 Score=132.26 Aligned_cols=131 Identities=36% Similarity=0.436 Sum_probs=99.6
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHH--CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHH
Q 006476 113 DRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~~i~~~~~--~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l 190 (643)
+++++++||+|||.+++..+..... ..++++|++|++.++.|+.+.+...+.. +..+..+.+........ ..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~ 75 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQE----KL 75 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHH----HH
Confidence 5799999999999999888887765 4679999999999999999999876543 47788888765444322 22
Q ss_pred hcCCceEEEechHhhhcccc-----cCccceEEeecccccchhHHH-----HHHhcCCCceEEEeccCC
Q 006476 191 KHGHLNIIVGTHSLLGSRVV-----YNNLGLLVVDEEQRFGVKQKE-----KIASFKISVDVLTLSATP 249 (643)
Q Consensus 191 ~~g~~dIiI~T~~~L~~~~~-----~~~l~llViDEah~~g~~~~~-----~l~~~~~~~~vl~lSATp 249 (643)
.....+|+++|++.+..... ..+++++|+||+|.+...... .........+++++||||
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 23568999999997765332 347899999999998543322 233446788999999997
No 144
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.58 E-value=6.7e-14 Score=159.83 Aligned_cols=300 Identities=19% Similarity=0.240 Sum_probs=215.1
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 168 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~ 168 (643)
...|+|.++++.+.+ ...++++++|+|||||.++..+++.. ..-.++++++|..+.+..+++.+.++|+...|
T Consensus 1143 ~~n~iqtqVf~~~y~------~nd~v~vga~~gsgkt~~ae~a~l~~-~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G 1215 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYN------TNDNVLVGAPNGSGKTACAELALLRP-DTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG 1215 (1674)
T ss_pred ccCCceEEEEeeeec------ccceEEEecCCCCchhHHHHHHhcCC-ccceEEEEecchHHHHHHHHHHHHHhhccccC
Confidence 339999999988754 35789999999999999999888872 33458999999999999999999999999888
Q ss_pred ceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccch----------hHHHHHHhcCC
Q 006476 169 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV----------KQKEKIASFKI 238 (643)
Q Consensus 169 i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~----------~~~~~l~~~~~ 238 (643)
..+.-+.|..+..- +.+.. -+|+|+||+.+...-....+++.|.||.|..|- ..+..-.++.+
T Consensus 1216 ~~~~~l~ge~s~~l-----kl~~~--~~vii~tpe~~d~lq~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k 1288 (1674)
T KOG0951|consen 1216 LRIVKLTGETSLDL-----KLLQK--GQVIISTPEQWDLLQSIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEK 1288 (1674)
T ss_pred ceEEecCCccccch-----HHhhh--cceEEechhHHHHHhhhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHh
Confidence 99999988665432 22222 589999998664333567889999999998652 12333345567
Q ss_pred CceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCc-cceeEEEccCCH-----------HHHHHHHHHHHhcCCeEEEE
Q 006476 239 SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER-LPIKTHLSAFSK-----------EKVISAIKYELDRGGQVFYV 306 (643)
Q Consensus 239 ~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~-~~v~~~~~~~~~-----------~~~~~~i~~~l~~~~qvlvf 306 (643)
+.+++.+|...... ....|.....++..+|..| .|...++..++. .....++.+....+...+||
T Consensus 1289 ~ir~v~ls~~lana---~d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf 1365 (1674)
T KOG0951|consen 1289 KIRVVALSSSLANA---RDLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVF 1365 (1674)
T ss_pred heeEEEeehhhccc---hhhccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEE
Confidence 88899888776322 1224554455566655543 355544443321 22456666666677889999
Q ss_pred ecCccChHHHHHHHHhhC--------------------CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccc
Q 006476 307 LPRIKGLEEPMDFLQQAF--------------------PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 366 (643)
Q Consensus 307 ~~~~~~~e~l~~~L~~~~--------------------p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~Gi 366 (643)
+++++.+..++.-+-... ..++..+-|-+++..+.+-+-.-|..|.+.|+|...- ..|+
T Consensus 1366 ~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~ 1444 (1674)
T KOG0951|consen 1366 LPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGT 1444 (1674)
T ss_pred eccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccc
Confidence 999888776665442110 1123444499999999999999999999999998766 7887
Q ss_pred cccCCCEEEEecC----------CCCCHHHHHHHHhccCCCCCceEEEEEecCC
Q 006476 367 DIQNANTIIVQDV----------QQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 367 Dip~v~~VI~~d~----------p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~ 410 (643)
-.. .+.||..+. ..|..+.+.|++|++.| .|.|+++....
T Consensus 1445 ~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~ 1494 (1674)
T KOG0951|consen 1445 KLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTP 1494 (1674)
T ss_pred ccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCc
Confidence 776 667776442 23567899999999988 47888887654
No 145
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.57 E-value=4.6e-14 Score=150.14 Aligned_cols=264 Identities=16% Similarity=0.221 Sum_probs=170.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHh
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 191 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~ 191 (643)
+-++-+|||.||||.-|+ +.+...+..++--|.|.||.++++++.+. |+.+-+++|...... ..
T Consensus 192 kIi~H~GPTNSGKTy~AL----qrl~~aksGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~~~-------~~ 255 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRAL----QRLKSAKSGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERRFV-------LD 255 (700)
T ss_pred eEEEEeCCCCCchhHHHH----HHHhhhccceecchHHHHHHHHHHHhhhc-----CCCccccccceeeec-------CC
Confidence 345669999999997664 44455678899999999999999999874 788888888332111 11
Q ss_pred cC-CceEEEechHhhhcccccCccceEEeecccccchhHH-----HHHHhc-CCCceEEEeccCCChHhHHHHHhcCCCc
Q 006476 192 HG-HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK-----EKIASF-KISVDVLTLSATPIPRTLYLALTGFRDA 264 (643)
Q Consensus 192 ~g-~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~-----~~l~~~-~~~~~vl~lSATp~~~~~~~~~~~~~~~ 264 (643)
+| .++.+-||-++..-. ..+++.||||.|.+...++ ..+.-+ ...+++ .+-| ..+.....-..
T Consensus 256 ~~~~a~hvScTVEM~sv~---~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHL---CGep--svldlV~~i~k-- 325 (700)
T KOG0953|consen 256 NGNPAQHVSCTVEMVSVN---TPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHL---CGEP--SVLDLVRKILK-- 325 (700)
T ss_pred CCCcccceEEEEEEeecC---CceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhc---cCCc--hHHHHHHHHHh--
Confidence 12 256677777665422 4568999999998743322 222111 122222 2222 22222111100
Q ss_pred ceeeCCCCCccceeEEEccCCHHHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHH
Q 006476 265 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLE 342 (643)
Q Consensus 265 ~~i~~~~~~~~~v~~~~~~~~~~~~~~~i~~~l~--~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~ 342 (643)
...+...+..|- ..++-.+.+.+...+. +.|.++|-+ +++++-.+...+.+. .+.++++++|+++++.|.
T Consensus 326 -----~TGd~vev~~Ye-Rl~pL~v~~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~-g~~k~aVIYGsLPPeTr~ 397 (700)
T KOG0953|consen 326 -----MTGDDVEVREYE-RLSPLVVEETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKA-GNHKCAVIYGSLPPETRL 397 (700)
T ss_pred -----hcCCeeEEEeec-ccCcceehhhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHh-cCcceEEEecCCCCchhH
Confidence 011222222221 1111112222222222 346666544 567888899999887 245699999999999999
Q ss_pred HHHHHHhc--CCceEEEecccccccccccCCCEEEEecCCCCC--------HHHHHHHHhccCCCCC---ceEEEEEecC
Q 006476 343 ETMEKFAQ--GAIKILICTNIVESGLDIQNANTIIVQDVQQFG--------LAQLYQLRGRVGRADK---EAHAYLFYPD 409 (643)
Q Consensus 343 ~v~~~F~~--g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s--------~~~~~Qr~GR~GR~g~---~g~a~~l~~~ 409 (643)
+.-..|.+ ++.+||||||.+++|+|+. ++.||.+..-.|+ .++..|.+|||||.|. .|.+-++..+
T Consensus 398 aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 398 AQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred HHHHHhCCCCCccceEEeecccccccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHh
Confidence 99999987 8999999999999999996 9999988766443 5788999999999963 4777777654
Q ss_pred C
Q 006476 410 K 410 (643)
Q Consensus 410 ~ 410 (643)
+
T Consensus 477 D 477 (700)
T KOG0953|consen 477 D 477 (700)
T ss_pred h
Confidence 3
No 146
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=1.1e-12 Score=150.50 Aligned_cols=132 Identities=21% Similarity=0.228 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccccccc
Q 006476 288 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 367 (643)
Q Consensus 288 ~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiD 367 (643)
.+.+.+.+....|.+|||-+.+++..+.+++.|... +++..++++.....+-+-+-+. ...-.|-|||++++||-|
T Consensus 616 Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~--gI~H~VLNAK~h~~EAeIVA~A--G~~GaVTIATNMAGRGTD 691 (1112)
T PRK12901 616 AVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMR--KIPHNVLNAKLHQKEAEIVAEA--GQPGTVTIATNMAGRGTD 691 (1112)
T ss_pred HHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHc--CCcHHHhhccchhhHHHHHHhc--CCCCcEEEeccCcCCCcC
Confidence 345555556678899999999999999999999988 7877788887654443333322 223469999999999999
Q ss_pred cc--------CCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC-CCcHHHHHHHHHH
Q 006476 368 IQ--------NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS-LLSDQALERLAAL 424 (643)
Q Consensus 368 ip--------~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~-~~~~~~~~rl~~i 424 (643)
|. +==+||-...+. |..--.|.+||+||.|.+|.+-+|++-++ +......+|+..+
T Consensus 692 IkLg~~V~e~GGL~VIgTerhe-SrRID~QLrGRaGRQGDPGsS~f~lSLEDdLmr~Fgs~ri~~~ 756 (1112)
T PRK12901 692 IKLSPEVKAAGGLAIIGTERHE-SRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKV 756 (1112)
T ss_pred cccchhhHHcCCCEEEEccCCC-cHHHHHHHhcccccCCCCCcceEEEEcccHHHHhhCcHHHHHH
Confidence 97 223667666665 67777899999999999999999988554 3333333444333
No 147
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.53 E-value=2.1e-11 Score=141.19 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=59.6
Q ss_pred CCCCCHHHHHHHHHhHHhhccC--CCCCcEEEEccCCCchHHHHHHHHHHH-HHCCCeEEEEeccHHHHHHHHH
Q 006476 87 PYEPTPDQKKAFLDVERDLTER--ETPMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHFD 157 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~--~~~~d~li~a~TGsGKT~~~l~~i~~~-~~~g~~vlil~Pt~~La~Q~~~ 157 (643)
.|+.+|-|.+.+..|.+.+.+. ..+..++|.|+||+|||++|++|++.. ..++++|+|-+.|+.|-.|...
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLVS 96 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHh
Confidence 4899999999999999877431 114678999999999999999998754 4578999999999999999864
No 148
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.50 E-value=2e-13 Score=144.94 Aligned_cols=314 Identities=14% Similarity=0.075 Sum_probs=205.2
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH--CCCeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~--~g~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
......+|.+++..+-. |.+.++.-.|.+||.+++..++..... .....++..||.++++...+-+.-.++
T Consensus 284 ~E~~~~~~~~~~~~~~~-------G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~ 356 (1034)
T KOG4150|consen 284 GESGIAISLELLKFASE-------GRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVE 356 (1034)
T ss_pred ccchhhhhHHHHhhhhh-------cccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEE
Confidence 33556788888776632 677888899999999998777765543 345678889999998875544433333
Q ss_pred CCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----cccc----CccceEEeeccccc----ch---h
Q 006476 165 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVY----NNLGLLVVDEEQRF----GV---K 228 (643)
Q Consensus 165 ~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~----~~l~llViDEah~~----g~---~ 228 (643)
..|..+-+++.-.....+. .-..+..-..+++++.|..... ...+ -.+.++++||+|-+ +. .
T Consensus 357 ~I~~~K~A~V~~~D~~sE~--~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~ 434 (1034)
T KOG4150|consen 357 VIKARKSAYVEMSDKLSET--TKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQD 434 (1034)
T ss_pred ehhhhhcceeecccCCCch--hHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHH
Confidence 3333333332221111111 1122223347888888865432 2222 34568999999974 22 1
Q ss_pred HHHHHHhc------CCCceEEEeccCCChHhHHHH-HhcCCCcceeeCC--CCCccceeE--------EEccCC--HHHH
Q 006476 229 QKEKIASF------KISVDVLTLSATPIPRTLYLA-LTGFRDASLISTP--PPERLPIKT--------HLSAFS--KEKV 289 (643)
Q Consensus 229 ~~~~l~~~------~~~~~vl~lSATp~~~~~~~~-~~~~~~~~~i~~~--~~~~~~v~~--------~~~~~~--~~~~ 289 (643)
+...+..+ ..+.+++-.|||...++..+. +.++....++... |....-... +..+.+ ....
T Consensus 435 ~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~ 514 (1034)
T KOG4150|consen 435 QLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEV 514 (1034)
T ss_pred HHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHH
Confidence 22233322 357899999999877776554 4556666555442 111110100 000000 0112
Q ss_pred HHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC----CCC--cEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccc
Q 006476 290 ISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF----PGV--DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 363 (643)
Q Consensus 290 ~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~----p~~--~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~ 363 (643)
...+.+.+..+-.++-||+.++-||.+-...++.+ |.+ .|..+.|+-..++|.++..+.-.|+..-+|||+.++
T Consensus 515 s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALE 594 (1034)
T KOG4150|consen 515 SHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALE 594 (1034)
T ss_pred HHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhh
Confidence 22333445567899999999888887666555443 211 356678999999999999999999999999999999
Q ss_pred ccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCC
Q 006476 364 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 364 ~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~ 410 (643)
-||||...+.|+..++|- |++.++|..||+||.++...+..+....
T Consensus 595 LGIDIG~LDAVl~~GFP~-S~aNl~QQ~GRAGRRNk~SLavyva~~~ 640 (1034)
T KOG4150|consen 595 LGIDIGHLDAVLHLGFPG-SIANLWQQAGRAGRRNKPSLAVYVAFLG 640 (1034)
T ss_pred hccccccceeEEEccCch-hHHHHHHHhccccccCCCceEEEEEecc
Confidence 999999999999999995 9999999999999999888877665443
No 149
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.49 E-value=1.1e-13 Score=115.03 Aligned_cols=81 Identities=36% Similarity=0.598 Sum_probs=75.4
Q ss_pred HHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhcc
Q 006476 315 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRV 394 (643)
Q Consensus 315 ~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~ 394 (643)
.+++.|+.. +.++..+||++++.+|..+++.|.++..+||++|+++++|+|+|++++||.++.+. +..+|.|++||+
T Consensus 2 ~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~-~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKEL--GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPW-SPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHC--CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCC-CHHHHHHhhccc
Confidence 456777776 78999999999999999999999999999999999999999999999999999985 999999999999
Q ss_pred CCCC
Q 006476 395 GRAD 398 (643)
Q Consensus 395 GR~g 398 (643)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9975
No 150
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.48 E-value=6.3e-13 Score=149.71 Aligned_cols=305 Identities=17% Similarity=0.205 Sum_probs=207.4
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHH---HHHHCCCeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF---CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~---~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
++.++|.+.+.++.. | ..+.-+-|+...+|-|||.+-+..+. ......+.-+|+||+-.|.. |..+|.. +.
T Consensus 394 ~Lk~YQl~GLqWmVS-L--yNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~k-Wa- 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVS-L--YNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPK-WA- 467 (1157)
T ss_pred CCchhhhhhhHHHhh-c--cCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhccc-cc-
Confidence 889999999988765 3 23345779999999999998654443 33333556899999988887 3444543 22
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccc-c--CccceEEeecccccchhHHHH---HHhcCCC
Q 006476 166 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-Y--NNLGLLVVDEEQRFGVKQKEK---IASFKIS 239 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~-~--~~l~llViDEah~~g~~~~~~---l~~~~~~ 239 (643)
|.+..+...| ++.++......++.|+.+|+++|++.+.++-. + -++.++||||.||+-..+... +......
T Consensus 468 -PSv~~i~YkG--tp~~R~~l~~qir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~ 544 (1157)
T KOG0386|consen 468 -PSVQKIQYKG--TPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRA 544 (1157)
T ss_pred -cceeeeeeeC--CHHHHhhHHHHHhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhhccccc
Confidence 4566666666 78888888888899999999999998765432 2 356789999999996654432 3323345
Q ss_pred ceEEEeccCCChHhHHHHHhc-----------------CCCcceeeC---------------------------------
Q 006476 240 VDVLTLSATPIPRTLYLALTG-----------------FRDASLIST--------------------------------- 269 (643)
Q Consensus 240 ~~vl~lSATp~~~~~~~~~~~-----------------~~~~~~i~~--------------------------------- 269 (643)
...+++|+||..+.+...+.. |.+.+.-.+
T Consensus 545 q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKke 624 (1157)
T KOG0386|consen 545 QRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKE 624 (1157)
T ss_pred hhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHH
Confidence 567789999864332111110 000000000
Q ss_pred -----CC-----------------------CCccceeE------------------------EE---------ccCCH-H
Q 006476 270 -----PP-----------------------PERLPIKT------------------------HL---------SAFSK-E 287 (643)
Q Consensus 270 -----~~-----------------------~~~~~v~~------------------------~~---------~~~~~-~ 287 (643)
|. .....+.+ ++ ..+.. +
T Consensus 625 VE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~d 704 (1157)
T KOG0386|consen 625 VEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKD 704 (1157)
T ss_pred HhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhH
Confidence 00 00000000 00 00000 0
Q ss_pred H-----HHHHHHHHH----hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCC---ceE
Q 006476 288 K-----VISAIKYEL----DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA---IKI 355 (643)
Q Consensus 288 ~-----~~~~i~~~l----~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~---~~I 355 (643)
. ..+.+.+.+ .-|+.|+.||....-...+..+|.-. ++....+.|....++|-..+..|..-. ...
T Consensus 705 L~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~--~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 705 LVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIR--EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred HHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhh--hhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 0 111222222 34789999999888888888888877 889999999999999999999998754 457
Q ss_pred EEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEE
Q 006476 356 LICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYL 405 (643)
Q Consensus 356 LVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~ 405 (643)
|.+|...+.|+|+..+++||+||.++ ++.+..|+--|+.|.|..-.+-+
T Consensus 783 llstragglglNlQtadtviifdsdw-np~~d~qaqdrahrigq~~evRv 831 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDW-NPHQDLQAQDRAHRIGQKKEVRV 831 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCC-CchhHHHHHHHHHHhhchhheee
Confidence 88999999999999999999999995 99999999999999987655444
No 151
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.45 E-value=3.5e-12 Score=134.19 Aligned_cols=300 Identities=13% Similarity=0.131 Sum_probs=194.9
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 168 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~ 168 (643)
.+-|+|.+.+...++ ++..+++..+.|-|||.+|+..+.... .....+|+||. ++-..|.+.+..++...
T Consensus 198 ~LlPFQreGv~faL~------RgGR~llADeMGLGKTiQAlaIA~yyr-aEwplliVcPA-svrftWa~al~r~lps~-- 267 (689)
T KOG1000|consen 198 RLLPFQREGVIFALE------RGGRILLADEMGLGKTIQALAIARYYR-AEWPLLIVCPA-SVRFTWAKALNRFLPSI-- 267 (689)
T ss_pred hhCchhhhhHHHHHh------cCCeEEEecccccchHHHHHHHHHHHh-hcCcEEEEecH-HHhHHHHHHHHHhcccc--
Confidence 778999999887664 367899999999999999876554443 34568999996 56677888887655443
Q ss_pred ceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc---ccccCccceEEeecccccchhHHHHHHh----cCCCce
Q 006476 169 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS---RVVYNNLGLLVVDEEQRFGVKQKEKIAS----FKISVD 241 (643)
Q Consensus 169 i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~---~~~~~~l~llViDEah~~g~~~~~~l~~----~~~~~~ 241 (643)
..+.++.+..+.. ..+.. ...|.|.+++.++. .+.-..+++||+||.|.+-.......+. +..-.+
T Consensus 268 ~pi~vv~~~~D~~------~~~~t-~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akh 340 (689)
T KOG1000|consen 268 HPIFVVDKSSDPL------PDVCT-SNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKH 340 (689)
T ss_pred cceEEEecccCCc------ccccc-CCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhh
Confidence 2355555533321 11111 14688888887753 2333569999999999874433222222 234567
Q ss_pred EEEeccCCCh---H----------------hHHHHHhcCCCcce----------------------------------ee
Q 006476 242 VLTLSATPIP---R----------------TLYLALTGFRDASL----------------------------------IS 268 (643)
Q Consensus 242 vl~lSATp~~---~----------------~~~~~~~~~~~~~~----------------------------------i~ 268 (643)
+|++|+||.- . .......+ .+... -.
T Consensus 341 vILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rY-Cd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 341 VILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRY-CDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred eEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHh-cCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999841 1 01111111 01000 11
Q ss_pred CCCCCccceeEEEccCC--------------------------------------HHHHHHHHHH---HH-hcCCeEEEE
Q 006476 269 TPPPERLPIKTHLSAFS--------------------------------------KEKVISAIKY---EL-DRGGQVFYV 306 (643)
Q Consensus 269 ~~~~~~~~v~~~~~~~~--------------------------------------~~~~~~~i~~---~l-~~~~qvlvf 306 (643)
.||. +..+........ ...+.+.+.. .. ..+.+.+||
T Consensus 420 LPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVF 498 (689)
T KOG1000|consen 420 LPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVF 498 (689)
T ss_pred CCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEE
Confidence 2333 322221111000 0001222222 01 234689999
Q ss_pred ecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcC-CceE-EEecccccccccccCCCEEEEecCCCCCH
Q 006476 307 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIKI-LICTNIVESGLDIQNANTIIVQDVQQFGL 384 (643)
Q Consensus 307 ~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g-~~~I-LVaT~i~~~GiDip~v~~VI~~d~p~~s~ 384 (643)
+....-.+.+...+.+. ++....+.|..+..+|+...+.|... +..| +++-+.++.|+++..++.|+....+. ++
T Consensus 499 aHH~~vLd~Iq~~~~~r--~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~w-nP 575 (689)
T KOG1000|consen 499 AHHQIVLDTIQVEVNKR--KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHW-NP 575 (689)
T ss_pred ehhHHHHHHHHHHHHHc--CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecC-CC
Confidence 99988899999999888 88899999999999999999999865 4444 55778899999999999999888885 89
Q ss_pred HHHHHHHhccCCCCCceEEEE--EecCC
Q 006476 385 AQLYQLRGRVGRADKEAHAYL--FYPDK 410 (643)
Q Consensus 385 ~~~~Qr~GR~GR~g~~g~a~~--l~~~~ 410 (643)
.-+.|.--|+.|.|+..-+.+ |+-+.
T Consensus 576 gvLlQAEDRaHRiGQkssV~v~ylvAKg 603 (689)
T KOG1000|consen 576 GVLLQAEDRAHRIGQKSSVFVQYLVAKG 603 (689)
T ss_pred ceEEechhhhhhccccceeeEEEEEecC
Confidence 999999999999987755433 44444
No 152
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.43 E-value=3.1e-11 Score=139.37 Aligned_cols=317 Identities=18% Similarity=0.146 Sum_probs=182.0
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhcc-CCCCCcEEEEccCCCchHHHHHHHHHHHHH--CCCeEEEEeccHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTE-RETPMDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQ 154 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~-~~~~~d~li~a~TGsGKT~~~l~~i~~~~~--~g~~vlil~Pt~~La~Q 154 (643)
-.+.|.+.-...-..+|-+|++.+..--.. ...|-=.+-.|-||||||++=...+..... .|.+..|..-.|.|..|
T Consensus 397 ~hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQ 476 (1110)
T TIGR02562 397 THKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQ 476 (1110)
T ss_pred chhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceecc
Confidence 345565444445578999999877642111 122344566899999999986555443332 24588888889999999
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHH-H----hcC------------------------------------
Q 006476 155 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM-I----KHG------------------------------------ 193 (643)
Q Consensus 155 ~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~-l----~~g------------------------------------ 193 (643)
.-+.++++++-- +-..+++.|+....+-.+..+. . .+|
T Consensus 477 TGda~r~rL~L~-~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~ 555 (1110)
T TIGR02562 477 TGHALKTRLNLS-DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDD 555 (1110)
T ss_pred chHHHHHhcCCC-ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccCh
Confidence 999988877433 3456666664322211110000 0 000
Q ss_pred ------CceEEEechHhhhccc-cc-------Cc----cceEEeecccccchhHHHHHHhc-----CCCceEEEeccCCC
Q 006476 194 ------HLNIIVGTHSLLGSRV-VY-------NN----LGLLVVDEEQRFGVKQKEKIASF-----KISVDVLTLSATPI 250 (643)
Q Consensus 194 ------~~dIiI~T~~~L~~~~-~~-------~~----l~llViDEah~~g~~~~~~l~~~-----~~~~~vl~lSATp~ 250 (643)
...++|||+.-+.... .+ .- -+.|||||+|-+.......|..+ ..+.+|++||||.+
T Consensus 556 k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP 635 (1110)
T TIGR02562 556 KEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLP 635 (1110)
T ss_pred hhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 1368899976554221 11 11 24699999999865444333332 35789999999998
Q ss_pred hHhHHHHH-------------hcCCCcce-ee------------------------------------CCCCCccceeEE
Q 006476 251 PRTLYLAL-------------TGFRDASL-IS------------------------------------TPPPERLPIKTH 280 (643)
Q Consensus 251 ~~~~~~~~-------------~~~~~~~~-i~------------------------------------~~~~~~~~v~~~ 280 (643)
+....... .+....++ |. ..|..|......
T Consensus 636 ~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~ 715 (1110)
T TIGR02562 636 PALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLS 715 (1110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEee
Confidence 75543221 11110110 00 000001000000
Q ss_pred EccC--CH----HHHHHHHHH----HHh------c-CCe----EEEEecCccChHHHHHHHHhhCCC----CcEEEEeCC
Q 006476 281 LSAF--SK----EKVISAIKY----ELD------R-GGQ----VFYVLPRIKGLEEPMDFLQQAFPG----VDIAIAHGQ 335 (643)
Q Consensus 281 ~~~~--~~----~~~~~~i~~----~l~------~-~~q----vlvf~~~~~~~e~l~~~L~~~~p~----~~v~~~hg~ 335 (643)
+... .. ..+.+.+.+ ... . .++ -+|-+++++.+-.++..|....+. +.+.++|++
T Consensus 716 ~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr 795 (1110)
T TIGR02562 716 LSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQ 795 (1110)
T ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEeccc
Confidence 0000 01 112222222 111 1 122 256678888888888888766432 358889999
Q ss_pred CCHHHHHHHHHHH----------------------hc----CCceEEEecccccccccccCCCEEEEecCCCCCHHHHHH
Q 006476 336 QYSRQLEETMEKF----------------------AQ----GAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 389 (643)
Q Consensus 336 ~~~~~r~~v~~~F----------------------~~----g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Q 389 (643)
..-..|..+.+.. .+ +...|+|||+++|.|+|+. .+.+|.. + . ++.+++|
T Consensus 796 ~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~~~-~-~-~~~sliQ 871 (1110)
T TIGR02562 796 DPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAIAD-P-S-SMRSIIQ 871 (1110)
T ss_pred ChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeeeec-c-C-cHHHHHH
Confidence 8766665554332 12 3568999999999999997 7877743 2 2 5789999
Q ss_pred HHhccCCCCC
Q 006476 390 LRGRVGRADK 399 (643)
Q Consensus 390 r~GR~GR~g~ 399 (643)
++||+.|.+.
T Consensus 872 ~aGR~~R~~~ 881 (1110)
T TIGR02562 872 LAGRVNRHRL 881 (1110)
T ss_pred Hhhccccccc
Confidence 9999999864
No 153
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.40 E-value=2.8e-11 Score=140.45 Aligned_cols=73 Identities=25% Similarity=0.281 Sum_probs=61.1
Q ss_pred CCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 86 ~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
-++++++.|.+++..+...+ .++...++.||||+|||++|+.|++... ..+++++|.++|+.|-.|..++...
T Consensus 12 ~~~~~r~~Q~~~~~~v~~a~---~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 12 PGFEPRPEQREMAEAVAEAL---KGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHH---cCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcc
Confidence 35799999999999888654 3355699999999999999999988764 4568999999999999998876554
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=4.5e-10 Score=131.05 Aligned_cols=75 Identities=23% Similarity=0.303 Sum_probs=65.9
Q ss_pred hcCCCCC-CHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CC--CeEEEEeccHHHHHHHHHHH
Q 006476 84 AQFPYEP-TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AG--KQAMVLAPTIVLAKQHFDVV 159 (643)
Q Consensus 84 ~~~~~~~-tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g--~~vlil~Pt~~La~Q~~~~~ 159 (643)
-.|||.+ +|.|.+.+..+.+.+. .+.+.++.+|||+|||++.+.+++.... .+ .++++.+.|..=..|..+++
T Consensus 4 v~FPy~~~y~~Q~~~m~~v~~~l~---~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 4 VYFPYEKIYPEQRSYMRDLKRSLD---RGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred eecCCCCCCHHHHHHHHHHHHHhc---cCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHH
Confidence 3589988 9999999999998774 3678999999999999999999988765 34 68999999999999999999
Q ss_pred HH
Q 006476 160 SE 161 (643)
Q Consensus 160 ~~ 161 (643)
++
T Consensus 81 k~ 82 (705)
T TIGR00604 81 RK 82 (705)
T ss_pred Hh
Confidence 86
No 155
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.30 E-value=3.1e-11 Score=125.91 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=99.5
Q ss_pred HHHHHHHHhHHhh------ccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCC-----eEEEEeccHHHHHHHHHHHHH
Q 006476 93 DQKKAFLDVERDL------TERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK-----QAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 93 ~Q~~ai~~i~~~~------~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~-----~vlil~Pt~~La~Q~~~~~~~ 161 (643)
+|.+|+..++.-. .........+++.++|+|||..++..+......++ .+||++|. .+..||..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 5899998887632 11244678899999999999998777654433322 49999999 788999999998
Q ss_pred HhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhh-----c---ccccCccceEEeecccccch---hHH
Q 006476 162 RFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-----S---RVVYNNLGLLVVDEEQRFGV---KQK 230 (643)
Q Consensus 162 ~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~-----~---~~~~~~l~llViDEah~~g~---~~~ 230 (643)
.+... ..++..+.+.. ... ....-.....+++|+|++.+. . .+.--++++||+||+|.+.. ...
T Consensus 80 ~~~~~-~~~v~~~~~~~--~~~--~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~ 154 (299)
T PF00176_consen 80 WFDPD-SLRVIIYDGDS--ERR--RLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRY 154 (299)
T ss_dssp HSGT--TS-EEEESSSC--HHH--HTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHH
T ss_pred ccccc-ccccccccccc--ccc--cccccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccc
Confidence 65332 46888887754 011 011112245799999999887 2 22224589999999999832 334
Q ss_pred HHHHhcCCCceEEEeccCCChHhHH
Q 006476 231 EKIASFKISVDVLTLSATPIPRTLY 255 (643)
Q Consensus 231 ~~l~~~~~~~~vl~lSATp~~~~~~ 255 (643)
..+..+. ...++++||||.+....
T Consensus 155 ~~l~~l~-~~~~~lLSgTP~~n~~~ 178 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTPIQNSLE 178 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-SSSGSH
T ss_pred ccccccc-cceEEeecccccccccc
Confidence 5566654 66778899999776543
No 156
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.28 E-value=1.3e-10 Score=126.94 Aligned_cols=157 Identities=18% Similarity=0.277 Sum_probs=106.7
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH-----HC-----CCeEEEEeccHHHHHHHH
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-----SA-----GKQAMVLAPTIVLAKQHF 156 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~-----~~-----g~~vlil~Pt~~La~Q~~ 156 (643)
.+.+-|+|..++.++.-. ++..+...|+..+.|-|||+..+..++..- .+ ...+||+||- .|..||+
T Consensus 323 ~v~LmpHQkaal~Wl~wR--E~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~ 399 (901)
T KOG4439|consen 323 KVELMPHQKAALRWLLWR--ESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWE 399 (901)
T ss_pred eeecchhhhhhhhhhccc--ccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHH
Confidence 458889999999887532 556677789999999999997665555321 11 1258999996 7899999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----------ccc--CccceEEeeccc
Q 006476 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----------VVY--NNLGLLVVDEEQ 223 (643)
Q Consensus 157 ~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----------~~~--~~l~llViDEah 223 (643)
.++..++... .++|.+++|....... .+.+ .++||||+|+..+... -.+ -.+.-||+||||
T Consensus 400 ~Ev~~rl~~n-~LsV~~~HG~n~r~i~---~~~L--~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH 473 (901)
T KOG4439|consen 400 AEVARRLEQN-ALSVYLYHGPNKREIS---AKEL--RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAH 473 (901)
T ss_pred HHHHHHHhhc-ceEEEEecCCccccCC---HHHH--hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhh
Confidence 9999999887 5899999985421111 1222 3489999999877541 011 134569999999
Q ss_pred ccch---hHHHHHHhcCCCceEEEeccCCChHh
Q 006476 224 RFGV---KQKEKIASFKISVDVLTLSATPIPRT 253 (643)
Q Consensus 224 ~~g~---~~~~~l~~~~~~~~vl~lSATp~~~~ 253 (643)
..-. .....+.++.. ....++|+||+.+.
T Consensus 474 ~IrN~~tq~S~AVC~L~a-~~RWclTGTPiqNn 505 (901)
T KOG4439|consen 474 NIRNSNTQCSKAVCKLSA-KSRWCLTGTPIQNN 505 (901)
T ss_pred hhcccchhHHHHHHHHhh-cceeecccCccccc
Confidence 7632 22233344432 23457899987644
No 157
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.25 E-value=1.1e-09 Score=123.87 Aligned_cols=277 Identities=15% Similarity=0.221 Sum_probs=169.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 189 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~ 189 (643)
..-.+|.+|.|||||.+.+.++-..+ ..+.++++++.++.|+.+.+.+|+.. .++|.. .+... +.. .+
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~--~l~gFv-~Y~d~--~~~----~i-- 117 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKA--GLSGFV-NYLDS--DDY----II-- 117 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhc--CCCcce-eeecc--ccc----cc--
Confidence 34568899999999998888776665 45789999999999999999998752 222222 11111 000 00
Q ss_pred HhcCCce-EEEechHhhhcc-cccCccceEEeeccccc-----ch--hHH----HHHHh-cCCCceEEEeccCCChHhHH
Q 006476 190 IKHGHLN-IIVGTHSLLGSR-VVYNNLGLLVVDEEQRF-----GV--KQK----EKIAS-FKISVDVLTLSATPIPRTLY 255 (643)
Q Consensus 190 l~~g~~d-IiI~T~~~L~~~-~~~~~l~llViDEah~~-----g~--~~~----~~l~~-~~~~~~vl~lSATp~~~~~~ 255 (643)
.....+ ++|+-+++..-. -.++++++|||||+-.. .. ++. ..+.. ++....+|++-||....+..
T Consensus 118 -~~~~~~rLivqIdSL~R~~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvd 196 (824)
T PF02399_consen 118 -DGRPYDRLIVQIDSLHRLDGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVD 196 (824)
T ss_pred -cccccCeEEEEehhhhhcccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHH
Confidence 000123 444444433222 23577999999999742 11 111 11222 24677899999999888776
Q ss_pred HHHhcC--CCcceeeC----------------------------CCCCc-----------cceeEEEccCCHHHHHHHHH
Q 006476 256 LALTGF--RDASLIST----------------------------PPPER-----------LPIKTHLSAFSKEKVISAIK 294 (643)
Q Consensus 256 ~~~~~~--~~~~~i~~----------------------------~~~~~-----------~~v~~~~~~~~~~~~~~~i~ 294 (643)
+....- .+..++.. ++.+. ....+.....+.......+.
T Consensus 197 Fl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~ 276 (824)
T PF02399_consen 197 FLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELL 276 (824)
T ss_pred HHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHH
Confidence 654421 11111110 00000 00011111123445777888
Q ss_pred HHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCC--
Q 006476 295 YELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN-- 372 (643)
Q Consensus 295 ~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~-- 372 (643)
..+..|.++-||+++....+.+++..+.. ..+|..++|.-+..+.+ . =++++|++=|+++..|+++....
T Consensus 277 ~~L~~gknIcvfsSt~~~~~~v~~~~~~~--~~~Vl~l~s~~~~~dv~----~--W~~~~VviYT~~itvG~Sf~~~HF~ 348 (824)
T PF02399_consen 277 ARLNAGKNICVFSSTVSFAEIVARFCARF--TKKVLVLNSTDKLEDVE----S--WKKYDVVIYTPVITVGLSFEEKHFD 348 (824)
T ss_pred HHHhCCCcEEEEeChHHHHHHHHHHHHhc--CCeEEEEcCCCCccccc----c--ccceeEEEEeceEEEEeccchhhce
Confidence 88899999999999988888888888876 77888888876655221 2 25789999999999999997542
Q ss_pred EEEEe-cCCCC--CHHHHHHHHhccCCCCCceEEEEEec
Q 006476 373 TIIVQ-DVQQF--GLAQLYQLRGRVGRADKEAHAYLFYP 408 (643)
Q Consensus 373 ~VI~~-d~p~~--s~~~~~Qr~GR~GR~g~~g~a~~l~~ 408 (643)
-|.-| .+... +..+.+|++||+-.- .....|+.++
T Consensus 349 ~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d 386 (824)
T PF02399_consen 349 SMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYID 386 (824)
T ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEe
Confidence 23333 11111 355789999999444 3445555544
No 158
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.18 E-value=3.7e-09 Score=120.37 Aligned_cols=302 Identities=20% Similarity=0.232 Sum_probs=187.1
Q ss_pred cCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 85 ~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
.....+...|.-.--.+ ...-+.-+-||-|||+++.+|+.-....|+.|.+++..--||.--++.+...+.
T Consensus 76 vlg~~~~dVQliG~i~l---------h~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~ 146 (822)
T COG0653 76 VLGMRHFDVQLLGGIVL---------HLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYE 146 (822)
T ss_pred hcCCChhhHHHhhhhhh---------cCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHH
Confidence 34456666776653222 133588999999999999999988888899999999999999998888887665
Q ss_pred CCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhh-----c-------ccccCccceEEeeccccc-------
Q 006476 165 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-----S-------RVVYNNLGLLVVDEEQRF------- 225 (643)
Q Consensus 165 ~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~-----~-------~~~~~~l~llViDEah~~------- 225 (643)
.. |+.|++...+.+..+++..+. +||.++|...|- + ......+.+.|+||+|.+
T Consensus 147 ~L-GlsvG~~~~~m~~~ek~~aY~------~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARt 219 (822)
T COG0653 147 FL-GLSVGVILAGMSPEEKRAAYA------CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEART 219 (822)
T ss_pred Hc-CCceeeccCCCChHHHHHHHh------cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeecccc
Confidence 54 899999999999888887763 899999987552 1 112345777888888731
Q ss_pred -----c-----hhHHHH----HHhcC--------CCceEEE---------------------------------------
Q 006476 226 -----G-----VKQKEK----IASFK--------ISVDVLT--------------------------------------- 244 (643)
Q Consensus 226 -----g-----~~~~~~----l~~~~--------~~~~vl~--------------------------------------- 244 (643)
| ...... +..+. ...+.+.
T Consensus 220 PLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l 299 (822)
T COG0653 220 PLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHIL 299 (822)
T ss_pred ceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHH
Confidence 1 000000 00000 0001111
Q ss_pred ----------------------------------------------------------------------eccCCChHhH
Q 006476 245 ----------------------------------------------------------------------LSATPIPRTL 254 (643)
Q Consensus 245 ----------------------------------------------------------------------lSATp~~~~~ 254 (643)
||.|......
T Consensus 300 ~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~ 379 (822)
T COG0653 300 FFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEE 379 (822)
T ss_pred hhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhh
Confidence 1111111111
Q ss_pred HHHHhcCCCcceeeCC---CCCccceeEEEccCCH---HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCc
Q 006476 255 YLALTGFRDASLISTP---PPERLPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328 (643)
Q Consensus 255 ~~~~~~~~~~~~i~~~---~~~~~~v~~~~~~~~~---~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~ 328 (643)
.+.. +.+..++..| |..|.+-...+..... ..+.+.+.....+|+++||-..+++..+.+.+.|.+. +++
T Consensus 380 EF~~--iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~--~i~ 455 (822)
T COG0653 380 EFDV--IYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKA--GIP 455 (822)
T ss_pred hhhh--ccCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhc--CCC
Confidence 1000 1111111111 1112222222211111 2345556666778999999999999999999999987 888
Q ss_pred EEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCC-----------EEEEecCCCC-CHHHHHHHHhccCC
Q 006476 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN-----------TIIVQDVQQF-GLAQLYQLRGRVGR 396 (643)
Q Consensus 329 v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~-----------~VI~~d~p~~-s~~~~~Qr~GR~GR 396 (643)
..++.+.-+.. +.-+-.+....--|-|||+++++|-||.=-. +|| +..+- |..--.|.+||+||
T Consensus 456 h~VLNAk~h~~--EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VI--gTERhESRRIDnQLRGRsGR 531 (822)
T COG0653 456 HNVLNAKNHAR--EAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVI--GTERHESRRIDNQLRGRAGR 531 (822)
T ss_pred ceeeccccHHH--HHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEE--ecccchhhHHHHHhhccccc
Confidence 88888886643 3333333333345889999999999985222 223 22220 22223599999999
Q ss_pred CCCceEEEEEecCC
Q 006476 397 ADKEAHAYLFYPDK 410 (643)
Q Consensus 397 ~g~~g~a~~l~~~~ 410 (643)
.|.+|.+-++.+-+
T Consensus 532 QGDpG~S~F~lSle 545 (822)
T COG0653 532 QGDPGSSRFYLSLE 545 (822)
T ss_pred CCCcchhhhhhhhH
Confidence 99999988877643
No 159
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.18 E-value=1.2e-10 Score=106.05 Aligned_cols=127 Identities=20% Similarity=0.263 Sum_probs=77.3
Q ss_pred CCcEEEEccCCCchHHHHHHH-HHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRA-IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 189 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~-i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~ 189 (643)
++-.++-..+|+|||.-.+.. +.+++..+.++|||.|||.++..+++.++. .| +++. ...... .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~----~~-~~~~--t~~~~~-~------- 68 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKG----LP-VRFH--TNARMR-T------- 68 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTT----SS-EEEE--STTSS----------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhc----CC-cccC--ceeeec-c-------
Confidence 556788999999999976544 456788999999999999999998777643 22 3332 221111 0
Q ss_pred HhcCCceEEEechHhhh----cccccCccceEEeecccccchhH---HHHHHhc--CCCceEEEeccCCChHh
Q 006476 190 IKHGHLNIIVGTHSLLG----SRVVYNNLGLLVVDEEQRFGVKQ---KEKIASF--KISVDVLTLSATPIPRT 253 (643)
Q Consensus 190 l~~g~~dIiI~T~~~L~----~~~~~~~l~llViDEah~~g~~~---~~~l~~~--~~~~~vl~lSATp~~~~ 253 (643)
..|..-|-+.||+.+. +.....++++||+||||-..... +..+..+ .....+|.+||||+.+.
T Consensus 69 -~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 69 -HFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred -ccCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 1255668888887553 34456899999999999753322 2223222 24468999999997653
No 160
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.18 E-value=5.3e-10 Score=121.93 Aligned_cols=158 Identities=18% Similarity=0.241 Sum_probs=107.4
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC---CCeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~---g~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
++-.+|.+.+.++.+- .+.|-+.|+..+.|-|||.+.+..+...... -+..||++|...| ..|++++.. |.
T Consensus 567 tLKEYQlkGLnWLvnl---YdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL-~NWaqEisr-Fl- 640 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNL---YDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTL-HNWAQEISR-FL- 640 (1185)
T ss_pred hhHHHhhccHHHHHHH---HHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHH-hHHHHHHHH-hC-
Confidence 6778999999988762 3557889999999999999987655544433 2467899998665 446777764 43
Q ss_pred CCCceEEEEeCCCChHHHHHHHHH------H--hcCCceEEEechHhhhcccc-c--CccceEEeecccccchhH---HH
Q 006476 166 YPDIKVGLLSRFQSKAEKEEHLDM------I--KHGHLNIIVGTHSLLGSRVV-Y--NNLGLLVVDEEQRFGVKQ---KE 231 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~~~~~~~~~------l--~~g~~dIiI~T~~~L~~~~~-~--~~l~llViDEah~~g~~~---~~ 231 (643)
|.+++.-+.|..+ +++ ++++ + ++...+|+|++++++..+-. | -.+.+.|+||||.+-... ++
T Consensus 641 -P~~k~lpywGs~~--eRk-iLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~RWK 716 (1185)
T KOG0388|consen 641 -PSFKVLPYWGSPS--ERK-ILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSSRWK 716 (1185)
T ss_pred -ccceeecCcCChh--hhH-HHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhhHHH
Confidence 5789988888433 322 2222 1 23457999999988754321 2 356789999999874433 33
Q ss_pred HHHhcCCCceEEEeccCCChHhHHHH
Q 006476 232 KIASFKISVDVLTLSATPIPRTLYLA 257 (643)
Q Consensus 232 ~l~~~~~~~~vl~lSATp~~~~~~~~ 257 (643)
.|..+ .....|++|+||+.++....
T Consensus 717 tLLsF-~cRNRLLLTGTPIQNsMqEL 741 (1185)
T KOG0388|consen 717 TLLSF-KCRNRLLLTGTPIQNSMQEL 741 (1185)
T ss_pred HHhhh-hccceeeecCCccchHHHHH
Confidence 34443 34557889999998765443
No 161
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.17 E-value=6.4e-11 Score=131.95 Aligned_cols=370 Identities=20% Similarity=0.230 Sum_probs=217.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHCC-----CeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVVSAG-----KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 186 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~~~g-----~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~ 186 (643)
.-++|-+.||+|||..+..-++.....+ ..+.+-.|||.-+..+++++...-+.-.+-.|++-.++.+...+.
T Consensus 394 ~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prp-- 471 (1282)
T KOG0921|consen 394 RVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRP-- 471 (1282)
T ss_pred ceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccccccccc--
Confidence 4578899999999999888888775443 357788899999999999887543222234455555544433321
Q ss_pred HHHHhcCCceEEEechHhhhccc--ccCccceEEeecccccchhH---HHHH---HhcCCCceEEEeccCCChHhHHHHH
Q 006476 187 LDMIKHGHLNIIVGTHSLLGSRV--VYNNLGLLVVDEEQRFGVKQ---KEKI---ASFKISVDVLTLSATPIPRTLYLAL 258 (643)
Q Consensus 187 ~~~l~~g~~dIiI~T~~~L~~~~--~~~~l~llViDEah~~g~~~---~~~l---~~~~~~~~vl~lSATp~~~~~~~~~ 258 (643)
.--|..+|-+-+.+.. -+....++|+||.|++.+.. ...+ .....+..++++|||.....+...+
T Consensus 472 -------yg~i~fctvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f~~~f 544 (1282)
T KOG0921|consen 472 -------YGSIMFCTVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTDLFTNFF 544 (1282)
T ss_pred -------ccceeeeccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccchhhhhhhh
Confidence 1257888887665432 24667899999999874321 2222 2234566777777775332221111
Q ss_pred hcCCCc-------------------ceeeCCCCCccceeEEE-----cc-------------------------------
Q 006476 259 TGFRDA-------------------SLISTPPPERLPIKTHL-----SA------------------------------- 283 (643)
Q Consensus 259 ~~~~~~-------------------~~i~~~~~~~~~v~~~~-----~~------------------------------- 283 (643)
....+. ..... |....+.+.+. ..
T Consensus 545 ~~~p~~~~~grt~pvq~F~led~~~~~~~v-p~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~ 623 (1282)
T KOG0921|consen 545 SSIPDVTVHGRTFPVQSFFLEDIIQMTQFV-PSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEK 623 (1282)
T ss_pred ccccceeeccccccHHHHHHHHhhhhhhcc-CCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhh
Confidence 111100 00000 11111100000 00
Q ss_pred CCHHHHHHHHHHHHh-c--CCeEEEEecCccChHHHHHHHHhh--C---CCCcEEEEeCCCCHHHHHHHHHHHhcCCceE
Q 006476 284 FSKEKVISAIKYELD-R--GGQVFYVLPRIKGLEEPMDFLQQA--F---PGVDIAIAHGQQYSRQLEETMEKFAQGAIKI 355 (643)
Q Consensus 284 ~~~~~~~~~i~~~l~-~--~~qvlvf~~~~~~~e~l~~~L~~~--~---p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~I 355 (643)
.....+.+++...+. + .+-+++|.+....+-.+..+|... + ..+.+...|++....+..++.+....|..++
T Consensus 624 d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~ki 703 (1282)
T KOG0921|consen 624 DIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKI 703 (1282)
T ss_pred cchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccccccccc
Confidence 001113333333222 2 377999999998888888887643 1 2357889999999999999999999999999
Q ss_pred EEecccccccccccCCCEEEEecCC-----------------CCCHHHHHHHHhccCCCCCceEEEEEecCCCCCcHHHH
Q 006476 356 LICTNIVESGLDIQNANTIIVQDVQ-----------------QFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQAL 418 (643)
Q Consensus 356 LVaT~i~~~GiDip~v~~VI~~d~p-----------------~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~~~~~~~ 418 (643)
+++|++++..+.+.++..||+.+.. +.+.....||.||+||. +.|+|+.+.+.-
T Consensus 704 i~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~a-------- 774 (1282)
T KOG0921|consen 704 ILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRA-------- 774 (1282)
T ss_pred ccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHH--------
Confidence 9999999999999998888864321 11335678999999998 789999887542
Q ss_pred HHHHHHHHHh--hcc----cchhhhhhhcccccCCCccCcc-ccCCccch-hhhhHHHHHHHHHhhhcCccccccCCcce
Q 006476 419 ERLAALEECR--ELG----QGFQLAEKDMGIRGFGTIFGEQ-QTGDVGNV-GVDLFFEMLFESLSKVDEHCVISVPYKSV 490 (643)
Q Consensus 419 ~rl~~i~~~~--~l~----~g~~i~~~dl~irg~g~~lg~~-q~g~~~~~-~~~~~~~~l~~a~~~~~~~~~~~~~~~~~ 490 (643)
|+++++++. ++. -.+.+..+-+.+-..+.+++.. |.-..+.+ ..+.-+ .+..+++... ..+++|..
T Consensus 775 -rF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l----~~m~~ld~n~-elt~lg~~ 848 (1282)
T KOG0921|consen 775 -RFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVL----REMGALDAND-ELTPLGRM 848 (1282)
T ss_pred -HHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHH----HHhhhhhccC-cccchhhh
Confidence 344443321 100 0111111111111234443332 22222222 222211 2233344322 24578888
Q ss_pred eEeeccCCCCCccccC
Q 006476 491 QIDININPRLPSEYIN 506 (643)
Q Consensus 491 ~~~~~~~~~~~~~~i~ 506 (643)
.+.+|+.|++.+.++.
T Consensus 849 la~l~iep~~~k~~~l 864 (1282)
T KOG0921|consen 849 LARLPIEPRIGKMMIL 864 (1282)
T ss_pred hhhccCcccccceeee
Confidence 8999999999888876
No 162
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.14 E-value=3.2e-09 Score=127.23 Aligned_cols=316 Identities=19% Similarity=0.256 Sum_probs=203.9
Q ss_pred CCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC----CCeEEEEeccHHHHHHHHHHHHH
Q 006476 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 86 ~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~----g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
....+.|+|.+.++++...+ .....+.+++.+.|.|||...+..+...... .+.+++++|+ ++..+|.+++.+
T Consensus 335 ~~~~lr~yq~~g~~wl~~~l--~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 335 LSAELRPYQLEGVNWLSELL--RSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhhhHHHHHHHHHHHHHHH--HhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhh
Confidence 33578999999998765222 2336778999999999999976665542222 3579999997 677778888854
Q ss_pred HhcCCCCce-EEEEeCCCC-hHHHHHHHHHHhcC----CceEEEechHhhhc---cc---ccCccceEEeecccccchh-
Q 006476 162 RFSKYPDIK-VGLLSRFQS-KAEKEEHLDMIKHG----HLNIIVGTHSLLGS---RV---VYNNLGLLVVDEEQRFGVK- 228 (643)
Q Consensus 162 ~~~~~~~i~-v~~l~g~~~-~~~~~~~~~~l~~g----~~dIiI~T~~~L~~---~~---~~~~l~llViDEah~~g~~- 228 (643)
|.. .++ +...+|... .....+.+..+... ..+++++|.+.+.. +. .-..++.+|+||+|+....
T Consensus 412 -~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~ 488 (866)
T COG0553 412 -FAP--DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ 488 (866)
T ss_pred -hCc--cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh
Confidence 544 356 777777553 11122233333322 27999999998876 32 2256789999999985332
Q ss_pred --HHHHHHhcCCCceEEEeccCCChHhHHHHHh--------cCCCcc---------------------------------
Q 006476 229 --QKEKIASFKISVDVLTLSATPIPRTLYLALT--------GFRDAS--------------------------------- 265 (643)
Q Consensus 229 --~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~--------~~~~~~--------------------------------- 265 (643)
....+..+.. ...+.+|.||..+.+...+. ++.+.+
T Consensus 489 s~~~~~l~~~~~-~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 489 SSEGKALQFLKA-LNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred hHHHHHHHHHhh-cceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 2233443333 33378888885432211100 000000
Q ss_pred ---------------ee-eCCCCCccc-----------------------------e-eE----------E---------
Q 006476 266 ---------------LI-STPPPERLP-----------------------------I-KT----------H--------- 280 (643)
Q Consensus 266 ---------------~i-~~~~~~~~~-----------------------------v-~~----------~--------- 280 (643)
++ ..|+..... . .. .
T Consensus 568 ~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTR 647 (866)
T ss_pred HHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence 00 000000000 0 00 0
Q ss_pred ----------EccC------------------------------C-HHHHHHHH-HHHHhcCC--eEEEEecCccChHHH
Q 006476 281 ----------LSAF------------------------------S-KEKVISAI-KYELDRGG--QVFYVLPRIKGLEEP 316 (643)
Q Consensus 281 ----------~~~~------------------------------~-~~~~~~~i-~~~l~~~~--qvlvf~~~~~~~e~l 316 (643)
+... . ...+.+.+ ......+. ++++|.+.....+-+
T Consensus 648 lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 648 LRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred HHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 0000 0 00111222 23344555 899999999999999
Q ss_pred HHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcC--CceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhcc
Q 006476 317 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG--AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRV 394 (643)
Q Consensus 317 ~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g--~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~ 394 (643)
...+... +.....++|+++...|...+..|.++ ..-++++|...+.|+|...+++||++|... +++...|...|+
T Consensus 728 ~~~l~~~--~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w-np~~~~Qa~dRa 804 (866)
T COG0553 728 EDYLKAL--GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW-NPAVELQAIDRA 804 (866)
T ss_pred HHHHHhc--CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc-ChHHHHHHHHHH
Confidence 9999887 57899999999999999999999986 455777788999999999999999999985 999999999999
Q ss_pred CCCCCceE--EEEEecCCC
Q 006476 395 GRADKEAH--AYLFYPDKS 411 (643)
Q Consensus 395 GR~g~~g~--a~~l~~~~~ 411 (643)
.|.|+... +|.+.+.+.
T Consensus 805 ~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 805 HRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred HHhcCcceeEEEEeecCCc
Confidence 99886654 555676664
No 163
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.09 E-value=4e-09 Score=125.67 Aligned_cols=286 Identities=18% Similarity=0.187 Sum_probs=157.7
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHH--HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 187 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~--~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~ 187 (643)
.+...+|+--||||||+...-.+-... ...+.|+|||-++.|-.|+.++|+. ++... .... ...+..+.++
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~-~~~~~-~~~~---~~~s~~~Lk~-- 344 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQS-FGKVA-FNDP---KAESTSELKE-- 344 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHH-HHHhh-hhcc---cccCHHHHHH--
Confidence 456789999999999999665554433 4568999999999999999999987 44321 1111 3333444333
Q ss_pred HHHhcCCceEEEechHhhhccc------cc-CccceEEeeccccc--chhHHHHHHhcCCCceEEEeccCCChHhHHH--
Q 006476 188 DMIKHGHLNIIVGTHSLLGSRV------VY-NNLGLLVVDEEQRF--GVKQKEKIASFKISVDVLTLSATPIPRTLYL-- 256 (643)
Q Consensus 188 ~~l~~g~~dIiI~T~~~L~~~~------~~-~~l~llViDEah~~--g~~~~~~l~~~~~~~~vl~lSATp~~~~~~~-- 256 (643)
.+..+.-.|+|+|-+.+.... .. ++==+||+|||||. |..+.. ++..-++...+++|+||+-.....
T Consensus 345 -~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~-~~~~~~~a~~~gFTGTPi~~~d~~tt 422 (962)
T COG0610 345 -LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKL-LKKALKKAIFIGFTGTPIFKEDKDTT 422 (962)
T ss_pred -HHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHHHHH-HHHHhccceEEEeeCCccccccccch
Confidence 344444579999987665322 11 22236999999995 443333 344446689999999996432221
Q ss_pred --HH-hc---------CCCcceeeCCCCCccceeEEEccCC-------------H---------------------HH--
Q 006476 257 --AL-TG---------FRDASLISTPPPERLPIKTHLSAFS-------------K---------------------EK-- 288 (643)
Q Consensus 257 --~~-~~---------~~~~~~i~~~~~~~~~v~~~~~~~~-------------~---------------------~~-- 288 (643)
.. .+ .+|..++.+.-..+..+........ . ..
T Consensus 423 ~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~ 502 (962)
T COG0610 423 KDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLI 502 (962)
T ss_pred hhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHH
Confidence 11 00 1111111100000000000000000 0 00
Q ss_pred -----HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCC-----------------Cc----EEEEeCCCCHHHHH
Q 006476 289 -----VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG-----------------VD----IAIAHGQQYSRQLE 342 (643)
Q Consensus 289 -----~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~-----------------~~----v~~~hg~~~~~~r~ 342 (643)
+.+........++++.+++++...+..+++......+. .. ....|... ...++
T Consensus 503 ~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~ 581 (962)
T COG0610 503 RAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KDEKK 581 (962)
T ss_pred HHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-HHHHh
Confidence 01111111123467778887776443444333222111 00 00001111 23334
Q ss_pred HHHHHH--hcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCC--C--CceEEEEEe
Q 006476 343 ETMEKF--AQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA--D--KEAHAYLFY 407 (643)
Q Consensus 343 ~v~~~F--~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~--g--~~g~a~~l~ 407 (643)
....+| .+...++||.++++-+|.|.|.++++.+ |-|- ---.++|.+-|+.|. + ..|..+.|.
T Consensus 582 ~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYv-DK~L-k~H~L~QAisRtNR~~~~~K~~G~IVDf~ 650 (962)
T COG0610 582 DLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYV-DKPL-KYHNLIQAISRTNRVFPGKKKFGLIVDFR 650 (962)
T ss_pred hhhhhhcCcCCCCCEEEEEccccccCCccccceEEe-cccc-ccchHHHHHHHhccCCCCCCCCcEEEECc
Confidence 444453 3457899999999999999999998885 4443 346789999999998 3 235555444
No 164
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.07 E-value=5e-09 Score=110.59 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=85.4
Q ss_pred CeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcC-Cce-EEEecccccccccccCCCEEEEec
Q 006476 301 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIK-ILICTNIVESGLDIQNANTIIVQD 378 (643)
Q Consensus 301 ~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g-~~~-ILVaT~i~~~GiDip~v~~VI~~d 378 (643)
.+.+||..-....+-+.-.|.+. |+.++-+-|+|++..|...++.|.+. .++ .||+-...+..+|+..+..|+..|
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~ka--GfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKA--GFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhcc--CceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 45677765555555555566665 89999999999999999999999975 344 566778888899999999999999
Q ss_pred CCCCCHHHHHHHHhccCCCCC--ceEEEEEecCCC
Q 006476 379 VQQFGLAQLYQLRGRVGRADK--EAHAYLFYPDKS 411 (643)
Q Consensus 379 ~p~~s~~~~~Qr~GR~GR~g~--~g~a~~l~~~~~ 411 (643)
+. |+++--+|...|+.|.|+ +-.++.|+-++.
T Consensus 717 PW-WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 717 PW-WNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred cc-ccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 87 599988999999999875 456666776554
No 165
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.07 E-value=2.1e-09 Score=111.94 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=63.0
Q ss_pred cCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CCC-----eEEEEeccHHHHHHHHHH
Q 006476 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGK-----QAMVLAPTIVLAKQHFDV 158 (643)
Q Consensus 85 ~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g~-----~vlil~Pt~~La~Q~~~~ 158 (643)
.|||+|+|.|.+.+..+.+.+.+ +.+.++.+|||+|||++++.|++..+. .+. +++|.++|..+..|....
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~---~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 4 YFPYEPYPIQYEFMEELKRVLDR---GKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHc---CCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHH
Confidence 48999999999999999887743 578999999999999999999876543 233 799999999999998887
Q ss_pred HHHH
Q 006476 159 VSER 162 (643)
Q Consensus 159 ~~~~ 162 (643)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7653
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.07 E-value=2.1e-09 Score=111.94 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=63.0
Q ss_pred cCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CCC-----eEEEEeccHHHHHHHHHH
Q 006476 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGK-----QAMVLAPTIVLAKQHFDV 158 (643)
Q Consensus 85 ~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g~-----~vlil~Pt~~La~Q~~~~ 158 (643)
.|||+|+|.|.+.+..+.+.+.+ +.+.++.+|||+|||++++.|++..+. .+. +++|.++|..+..|....
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~---~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 4 YFPYEPYPIQYEFMEELKRVLDR---GKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHc---CCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHH
Confidence 48999999999999999887743 578999999999999999999876543 233 799999999999998887
Q ss_pred HHHH
Q 006476 159 VSER 162 (643)
Q Consensus 159 ~~~~ 162 (643)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7653
No 167
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.02 E-value=6e-09 Score=118.86 Aligned_cols=159 Identities=19% Similarity=0.276 Sum_probs=111.4
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH-HCC--CeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAG--KQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~-~~g--~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
.++.+|...++++.. | ..+.-|-|+....|-|||..-+..+.... ..| +.-||+|||-.+.+ |--+|+. |+
T Consensus 615 qLReYQkiGLdWLat-L--YeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLn-WEMElKR-wc- 688 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLAT-L--YEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILN-WEMELKR-WC- 688 (1958)
T ss_pred HHHHHHHhhHHHHHH-H--HHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhh-hhHHHhh-hC-
Confidence 788999999998765 3 34467889999999999998654443332 222 45799999976655 5556764 44
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHH-hcCCceEEEechHhhhccc---ccCccceEEeeccccc---chhHHHHHHhcCC
Q 006476 166 YPDIKVGLLSRFQSKAEKEEHLDMI-KHGHLNIIVGTHSLLGSRV---VYNNLGLLVVDEEQRF---GVKQKEKIASFKI 238 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~~~~~~~~~l-~~g~~dIiI~T~~~L~~~~---~~~~l~llViDEah~~---g~~~~~~l~~~~~ 238 (643)
|+++|..++| +.++++...++- +-+..+|.|+++..+..+. .-++|.++|+||||++ -...++.+..+.
T Consensus 689 -PglKILTYyG--s~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfn- 764 (1958)
T KOG0391|consen 689 -PGLKILTYYG--SHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFN- 764 (1958)
T ss_pred -CcceEeeecC--CHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccc-
Confidence 5899999998 555544433321 2234789999998886543 3378999999999985 345567776664
Q ss_pred CceEEEeccCCChHhHHHH
Q 006476 239 SVDVLTLSATPIPRTLYLA 257 (643)
Q Consensus 239 ~~~vl~lSATp~~~~~~~~ 257 (643)
..+.|++|.||..+++-..
T Consensus 765 sqrRLLLtgTPLqNslmEL 783 (1958)
T KOG0391|consen 765 SQRRLLLTGTPLQNSLMEL 783 (1958)
T ss_pred hhheeeecCCchhhHHHHH
Confidence 4566789999987765433
No 168
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.93 E-value=9.7e-08 Score=107.46 Aligned_cols=119 Identities=21% Similarity=0.202 Sum_probs=93.0
Q ss_pred HHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC--------------------CCCcEEEEeCCCCHHHHHHHHHHHhc
Q 006476 291 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF--------------------PGVDIAIAHGQQYSRQLEETMEKFAQ 350 (643)
Q Consensus 291 ~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~--------------------p~~~v~~~hg~~~~~~r~~v~~~F~~ 350 (643)
+.+...-.-|.++|||..+....+-+..+|.... .|.....+.|..+..+|+.....|.+
T Consensus 1133 eIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNd 1212 (1567)
T KOG1015|consen 1133 EILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFND 1212 (1567)
T ss_pred HHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcC
Confidence 3333333447789999999998888888875321 12356778999999999999999986
Q ss_pred CC----ceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCc--eEEEEEecCC
Q 006476 351 GA----IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE--AHAYLFYPDK 410 (643)
Q Consensus 351 g~----~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~--g~a~~l~~~~ 410 (643)
-. .-.||+|...+-|||+-.+|.||+||+.+ +++--.|-+=||-|.|+. -|+|.|+...
T Consensus 1213 p~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasW-NPSyDtQSIFRvyRfGQtKPvyiYRfiAqG 1277 (1567)
T KOG1015|consen 1213 PTNLRARLFLISTRAGSLGINLVAANRVIIFDASW-NPSYDTQSIFRVYRFGQTKPVYIYRFIAQG 1277 (1567)
T ss_pred cccceeEEEEEeeccCccccceeecceEEEEeccc-CCccchHHHHHHHhhcCcCceeehhhhhcc
Confidence 32 34899999999999999999999999985 888779999999999865 4555566544
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.80 E-value=2.6e-07 Score=94.21 Aligned_cols=130 Identities=23% Similarity=0.261 Sum_probs=98.3
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHH
Q 006476 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 159 (643)
Q Consensus 80 ~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~ 159 (643)
+.......+.|++.|.-++-.+. ...|+...||-|||+++.+++......|+.|-|++....||..-++.+
T Consensus 68 ea~~r~~g~~p~~vQll~~l~L~---------~G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~ 138 (266)
T PF07517_consen 68 EAARRTLGLRPYDVQLLGALALH---------KGRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEM 138 (266)
T ss_dssp HHHHHHTS----HHHHHHHHHHH---------TTSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHH
T ss_pred HHHHHHcCCcccHHHHhhhhhcc---------cceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHH
Confidence 44556778899999999986553 234999999999999998888777788999999999999999999999
Q ss_pred HHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhh-----ccc-------ccCccceEEeeccccc
Q 006476 160 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-----SRV-------VYNNLGLLVVDEEQRF 225 (643)
Q Consensus 160 ~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~-----~~~-------~~~~l~llViDEah~~ 225 (643)
...|..+ |++++.+....+..++++.+. +||++||.+-+. +.+ ..+.+.++||||+|.+
T Consensus 139 ~~~y~~L-Glsv~~~~~~~~~~~r~~~Y~------~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 139 RPFYEFL-GLSVGIITSDMSSEERREAYA------ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp HHHHHHT-T--EEEEETTTEHHHHHHHHH------SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred HHHHHHh-hhccccCccccCHHHHHHHHh------CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 9877766 899999999877766666553 789999987553 211 1367889999999964
No 170
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.63 E-value=1e-05 Score=87.74 Aligned_cols=268 Identities=13% Similarity=0.178 Sum_probs=169.2
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCC----------C-------ChHHHHHHHHHHhcC--------
Q 006476 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRF----------Q-------SKAEKEEHLDMIKHG-------- 193 (643)
Q Consensus 139 g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~----------~-------~~~~~~~~~~~l~~g-------- 193 (643)
.++||||+|+|..|.++.+.+.+.+... ..+.-..++ . ....+...++.+-.|
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~--~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPG--KQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCcc--chHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 3689999999999999988887644320 111000000 0 000111234444444
Q ss_pred ----------------CceEEEechHhhhc----------cc-ccCccceEEeecccccchhHHHHHHh-------c---
Q 006476 194 ----------------HLNIIVGTHSLLGS----------RV-VYNNLGLLVVDEEQRFGVKQKEKIAS-------F--- 236 (643)
Q Consensus 194 ----------------~~dIiI~T~~~L~~----------~~-~~~~l~llViDEah~~g~~~~~~l~~-------~--- 236 (643)
+.|||||+|=-|.. +. .++.+.++|+|-||-+..+.++.+.. .
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCC
Confidence 35999999965541 12 35788999999999765544433221 1
Q ss_pred ------------------CCCceEEEeccCCChHhHHHHHhcCCCcc-e--eeCCCC-------CccceeEEEccCC---
Q 006476 237 ------------------KISVDVLTLSATPIPRTLYLALTGFRDAS-L--ISTPPP-------ERLPIKTHLSAFS--- 285 (643)
Q Consensus 237 ------------------~~~~~vl~lSATp~~~~~~~~~~~~~~~~-~--i~~~~~-------~~~~v~~~~~~~~--- 285 (643)
+.-+|+|++|+...|...........+.. . +..+.. ...++.+....++
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 12378999999999988776665333221 1 111111 1123333332211
Q ss_pred ----HHHH----HHHHHHHHh---cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCce
Q 006476 286 ----KEKV----ISAIKYELD---RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIK 354 (643)
Q Consensus 286 ----~~~~----~~~i~~~l~---~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ 354 (643)
.+.- .+.+.-.+. ..+.++||+|+--+--.+-++|+.. ++..+.+|--.++.+..++-..|.+|+.+
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~--~~sF~~i~EYts~~~isRAR~~F~~G~~~ 352 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE--NISFVQISEYTSNSDISRARSQFFHGRKP 352 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhc--CCeEEEecccCCHHHHHHHHHHHHcCCce
Confidence 1111 111222222 3478999999988888888999876 88999999999999999999999999999
Q ss_pred EEEeccc--ccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCC------CceEEEEEecCCC
Q 006476 355 ILICTNI--VESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD------KEAHAYLFYPDKS 411 (643)
Q Consensus 355 ILVaT~i--~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g------~~g~a~~l~~~~~ 411 (643)
||+.|-= .=+=..+.++++||.|.+|. .+.-|...+.-.+... ..+.|.++|+.-+
T Consensus 353 iLL~TER~HFfrRy~irGi~~viFY~~P~-~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D 416 (442)
T PF06862_consen 353 ILLYTERFHFFRRYRIRGIRHVIFYGPPE-NPQFYSELLNMLDESSGGEVDAADATVTVLYSKYD 416 (442)
T ss_pred EEEEEhHHhhhhhceecCCcEEEEECCCC-ChhHHHHHHhhhcccccccccccCceEEEEecHhH
Confidence 9999963 23456788899999999997 5555555555444443 2578999997654
No 171
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.53 E-value=2.1e-06 Score=100.38 Aligned_cols=163 Identities=20% Similarity=0.312 Sum_probs=102.6
Q ss_pred CCCCHHHHHHHHHhHHhhcc-----C--------------------------CCCCcEEEEccCCCchHHHHHHHHHHHH
Q 006476 88 YEPTPDQKKAFLDVERDLTE-----R--------------------------ETPMDRLICGDVGFGKTEVALRAIFCVV 136 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~-----~--------------------------~~~~d~li~a~TGsGKT~~~l~~i~~~~ 136 (643)
|+--|+|.+|+.+|+.-+.+ . +...++.+.++||+|||.+|+..++...
T Consensus 5 ~e~l~hQ~~av~ai~~~F~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~M~TGtGKT~~~~~~i~~l~ 84 (986)
T PRK15483 5 LEELPHQEQALAAILAAFTGIDIASADPNHYANPLIKLRYENGIPGRSRTRIDDKANIDIKMETGTGKTYVYTRLMYELH 84 (986)
T ss_pred cccChhHHHHHHHHHHHhcCCCccCCccccccCcccccchhhccccccccccCccceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 44478899999888764321 1 1125889999999999999999988775
Q ss_pred HC-C-CeEEEEeccHHHHHHHHHHHH-----HHhcC-CC--CceEEEEeCCCChHH-H---HHHHHHHhcC------Cce
Q 006476 137 SA-G-KQAMVLAPTIVLAKQHFDVVS-----ERFSK-YP--DIKVGLLSRFQSKAE-K---EEHLDMIKHG------HLN 196 (643)
Q Consensus 137 ~~-g-~~vlil~Pt~~La~Q~~~~~~-----~~~~~-~~--~i~v~~l~g~~~~~~-~---~~~~~~l~~g------~~d 196 (643)
.. | .+.+|+||+.+.-..+.+.+. ..|.. +. .++..++.+....+. + -..+.....+ .++
T Consensus 85 ~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~ 164 (986)
T PRK15483 85 QKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIH 164 (986)
T ss_pred HHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceE
Confidence 54 3 579999999888777665543 23332 22 245555554321000 0 1122222222 589
Q ss_pred EEEechHhhhcccc----------------cCcc----ceEEeecccccc--hhHHHHHHhcCCCceEEEeccCCCh
Q 006476 197 IIVGTHSLLGSRVV----------------YNNL----GLLVVDEEQRFG--VKQKEKIASFKISVDVLTLSATPIP 251 (643)
Q Consensus 197 IiI~T~~~L~~~~~----------------~~~l----~llViDEah~~g--~~~~~~l~~~~~~~~vl~lSATp~~ 251 (643)
|+|.|-+.+..... +..+ -+||+||.|+|. ...++.+..+.+. -+|-+|||...
T Consensus 165 Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~~k~~~~i~~lnpl-~~lrysAT~~~ 240 (986)
T PRK15483 165 VLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRDNKFYQAIEALKPQ-MIIRFGATFPD 240 (986)
T ss_pred EEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcchHHHHHHHhcCcc-cEEEEeeecCC
Confidence 99999888765311 1111 259999999993 3556777776543 36779999754
No 172
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.41 E-value=1.2e-06 Score=87.43 Aligned_cols=66 Identities=21% Similarity=0.291 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCc-EEEEccCCCchHHHHHHHHHHH--------HHCCCeEEEEeccHHHHHHHHHHH
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMD-RLICGDVGFGKTEVALRAIFCV--------VSAGKQAMVLAPTIVLAKQHFDVV 159 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d-~li~a~TGsGKT~~~l~~i~~~--------~~~g~~vlil~Pt~~La~Q~~~~~ 159 (643)
.+++.|.+|+..++. ... .+|.||.|+|||.+....+... ...++++++++|+...+.++.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~-------~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l 73 (236)
T PF13086_consen 1 KLNESQREAIQSALS-------SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERL 73 (236)
T ss_dssp ---HHHHHHHHHHCT-------SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-------CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHH
Confidence 368899999987764 244 8999999999997765554444 355789999999999999999998
Q ss_pred HH
Q 006476 160 SE 161 (643)
Q Consensus 160 ~~ 161 (643)
.+
T Consensus 74 ~~ 75 (236)
T PF13086_consen 74 KK 75 (236)
T ss_dssp HC
T ss_pred Hh
Confidence 76
No 173
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.25 E-value=1.5e-05 Score=78.21 Aligned_cols=125 Identities=21% Similarity=0.240 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 168 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~ 168 (643)
++++.|.+|+..++. + ...-.+++|+.|+|||.+.-.........|.++++++||...+....+.. +
T Consensus 1 ~L~~~Q~~a~~~~l~---~--~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~--------~ 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILT---S--GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKT--------G 67 (196)
T ss_dssp -S-HHHHHHHHHHHH---C--TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHH--------T
T ss_pred CCCHHHHHHHHHHHh---c--CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhh--------C
Confidence 478999999999875 1 23457889999999998643332223345789999999998888754442 2
Q ss_pred ceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHhc-CC-CceEEEe
Q 006476 169 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF-KI-SVDVLTL 245 (643)
Q Consensus 169 i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~-~~-~~~vl~l 245 (643)
+.+..++++..... .+ .......+.+.++|||||+-.++......+... .. +.+++++
T Consensus 68 ~~a~Ti~~~l~~~~---------~~----------~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilv 127 (196)
T PF13604_consen 68 IEAQTIHSFLYRIP---------NG----------DDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILV 127 (196)
T ss_dssp S-EEEHHHHTTEEC---------CE----------ECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEE
T ss_pred cchhhHHHHHhcCC---------cc----------cccccccCCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEE
Confidence 34443332111000 00 000001145667999999999988776655443 33 4566544
No 174
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.08 E-value=8.1e-06 Score=80.10 Aligned_cols=135 Identities=19% Similarity=0.292 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHHHHHHhcCC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK--QAMVLAPTIVLAKQHFDVVSERFSKY 166 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~--~vlil~Pt~~La~Q~~~~~~~~~~~~ 166 (643)
..|+.|..++..+++ ..-+++.||.|||||+.++.++++.+.++. +++++-|+.+.... ++-.
T Consensus 4 p~~~~Q~~~~~al~~-------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~--------lGfl 68 (205)
T PF02562_consen 4 PKNEEQKFALDALLN-------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGED--------LGFL 68 (205)
T ss_dssp --SHHHHHHHHHHHH--------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT------------SS
T ss_pred CCCHHHHHHHHHHHh-------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccc--------cccC
Confidence 458899999999974 357899999999999999999998888764 78888887654221 2222
Q ss_pred CCceEEEEeCC-----------CChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhH-HHHHH
Q 006476 167 PDIKVGLLSRF-----------QSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQ-KEKIA 234 (643)
Q Consensus 167 ~~i~v~~l~g~-----------~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~-~~~l~ 234 (643)
||-.-.-+... ..... .-..+.+| .|-+.++..+.. -.|++ .+||+||||.+...+ +..+.
T Consensus 69 pG~~~eK~~p~~~p~~d~l~~~~~~~~---~~~~~~~~--~Ie~~~~~~iRG-rt~~~-~~iIvDEaQN~t~~~~k~ilT 141 (205)
T PF02562_consen 69 PGDLEEKMEPYLRPIYDALEELFGKEK---LEELIQNG--KIEIEPLAFIRG-RTFDN-AFIIVDEAQNLTPEELKMILT 141 (205)
T ss_dssp ---------TTTHHHHHHHTTTS-TTC---HHHHHHTT--SEEEEEGGGGTT---B-S-EEEEE-SGGG--HHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhChHh---HHHHhhcC--eEEEEehhhhcC-ccccc-eEEEEecccCCCHHHHHHHHc
Confidence 21110000000 00001 11112233 455556555543 23443 799999999997755 45567
Q ss_pred hcCCCceEEEe
Q 006476 235 SFKISVDVLTL 245 (643)
Q Consensus 235 ~~~~~~~vl~l 245 (643)
+...+.+++++
T Consensus 142 R~g~~skii~~ 152 (205)
T PF02562_consen 142 RIGEGSKIIIT 152 (205)
T ss_dssp TB-TT-EEEEE
T ss_pred ccCCCcEEEEe
Confidence 77777777754
No 175
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.05 E-value=9.6e-06 Score=93.33 Aligned_cols=247 Identities=21% Similarity=0.173 Sum_probs=144.6
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC--CCeEEEEeccHHHHHHHHHHHHHHhcCC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQHFDVVSERFSKY 166 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~--g~~vlil~Pt~~La~Q~~~~~~~~~~~~ 166 (643)
...|.|.+.+.... .-..+.++-+|||+|||.+|..+++..... +.++++++|..+|...-.+.+..++...
T Consensus 927 ~fn~~q~~if~~~y------~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~ 1000 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLY------HTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP 1000 (1230)
T ss_pred ccCCccceEEEEEe------ecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccC
Confidence 44455555543332 224678899999999999999999988765 5699999999999999999998876554
Q ss_pred CCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-------cccCccceEEeecccccchh---HHHHHH--
Q 006476 167 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------VVYNNLGLLVVDEEQRFGVK---QKEKIA-- 234 (643)
Q Consensus 167 ~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-------~~~~~l~llViDEah~~g~~---~~~~l~-- 234 (643)
|+++.-++|...+.- ..+ .+.+++|+||...-.. -.+.+++++|+||.|..|.. ..+.+.
T Consensus 1001 -g~k~ie~tgd~~pd~-----~~v--~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr 1072 (1230)
T KOG0952|consen 1001 -GIKVIELTGDVTPDV-----KAV--READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSR 1072 (1230)
T ss_pred -CceeEeccCccCCCh-----hhe--ecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeec
Confidence 899999999776542 122 2479999999876432 23578899999999998654 222211
Q ss_pred ------hcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCC-CCCccceeEEEccCCH-----------HHHHHHHHHH
Q 006476 235 ------SFKISVDVLTLSATPIPRTLYLALTGFRDASLISTP-PPERLPIKTHLSAFSK-----------EKVISAIKYE 296 (643)
Q Consensus 235 ------~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~-~~~~~~v~~~~~~~~~-----------~~~~~~i~~~ 296 (643)
.....++.+++|--+.....-.-+.+..+. ...+ .....|...++..+.. .....+ .+.
T Consensus 1073 ~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~--~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qa-ik~ 1149 (1230)
T KOG0952|consen 1073 MNYISSQTEEPVRYLGLSTALANANDLADWLNIKDM--YNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQA-IKT 1149 (1230)
T ss_pred cccCccccCcchhhhhHhhhhhccHHHHHHhCCCCc--CCCCcccccCCceEeecCCCchhcchhhhhcccHHHHH-Hhc
Confidence 112345555555443222111122333332 1111 1122333334333322 112222 233
Q ss_pred HhcCCeEEEEecCccChHHHHHHHHhhC--CCCcEEEEeCCCCHHHHHHHHHHHhcCCce
Q 006476 297 LDRGGQVFYVLPRIKGLEEPMDFLQQAF--PGVDIAIAHGQQYSRQLEETMEKFAQGAIK 354 (643)
Q Consensus 297 l~~~~qvlvf~~~~~~~e~l~~~L~~~~--p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ 354 (643)
......+++|+.+.......+.-|-... +.-+..+++.+ ..+.+.+|...++...+
T Consensus 1150 ~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1150 HSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CCCCCceEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 3455788999988765443333332221 12233444433 66777777776665443
No 176
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.04 E-value=2.8e-05 Score=85.35 Aligned_cols=72 Identities=24% Similarity=0.209 Sum_probs=59.6
Q ss_pred HhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHH
Q 006476 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 160 (643)
Q Consensus 83 ~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~ 160 (643)
...++..+.+-|.+|+....+ . ..-.++.||+|+|||.+....+.+.+..+++++|.+||.+-+..+.+++.
T Consensus 179 ~~~~~~~ln~SQk~Av~~~~~-----~-k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 179 ITFFNKNLNSSQKAAVSFAIN-----N-KDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccCCccccHHHHHHHHHHhc-----c-CCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 344556888999999887653 1 24578999999999999988899999999999999999999988888643
No 177
>PRK10536 hypothetical protein; Provisional
Probab=98.03 E-value=0.00026 Score=71.60 Aligned_cols=144 Identities=13% Similarity=0.150 Sum_probs=78.2
Q ss_pred HHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC--CeEEEEeccHHHHHH----
Q 006476 81 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQ---- 154 (643)
Q Consensus 81 ~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g--~~vlil~Pt~~La~Q---- 154 (643)
.+.-.+....+..|...+..+.+ ...+++.|++|+|||..+...+...+.++ .++++.-|+......
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~al~~-------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfL 123 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLKAIES-------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFL 123 (262)
T ss_pred hcCCccccCCCHHHHHHHHHHhc-------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcC
Confidence 33333444668889998887743 35789999999999999988877666443 244555555432211
Q ss_pred ---HHHHHHHHhcCCC-CceEEEEeCCCChHHHHHHHHHH---hcCCceEEEechHhhhcccccCccceEEeecccccch
Q 006476 155 ---HFDVVSERFSKYP-DIKVGLLSRFQSKAEKEEHLDMI---KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV 227 (643)
Q Consensus 155 ---~~~~~~~~~~~~~-~i~v~~l~g~~~~~~~~~~~~~l---~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~ 227 (643)
..+.+.-++...- .+ ..+.+ .. .++.+ ..| .|-|....-+.. -.|.+ ++||+||||.+..
T Consensus 124 PG~~~eK~~p~~~pi~D~L--~~~~~---~~----~~~~~~~~~~~--~Iei~~l~ymRG-rtl~~-~~vIvDEaqn~~~ 190 (262)
T PRK10536 124 PGDIAEKFAPYFRPVYDVL--VRRLG---AS----FMQYCLRPEIG--KVEIAPFAYMRG-RTFEN-AVVILDEAQNVTA 190 (262)
T ss_pred CCCHHHHHHHHHHHHHHHH--HHHhC---hH----HHHHHHHhccC--cEEEecHHHhcC-CcccC-CEEEEechhcCCH
Confidence 0111111110000 00 00000 00 11111 123 355555555543 33433 7999999999977
Q ss_pred hH-HHHHHhcCCCceEEE
Q 006476 228 KQ-KEKIASFKISVDVLT 244 (643)
Q Consensus 228 ~~-~~~l~~~~~~~~vl~ 244 (643)
.+ +..+.++..+.++|+
T Consensus 191 ~~~k~~ltR~g~~sk~v~ 208 (262)
T PRK10536 191 AQMKMFLTRLGENVTVIV 208 (262)
T ss_pred HHHHHHHhhcCCCCEEEE
Confidence 55 455677777777664
No 178
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.01 E-value=6.4e-05 Score=86.60 Aligned_cols=68 Identities=24% Similarity=0.205 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
..+++.|.+|+..++. .....+|.||+|+|||.+....+...+..|.+|++++||...+.++.+.+.+
T Consensus 156 ~~ln~~Q~~Av~~~l~------~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALS------SKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhc------CCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4789999999988753 1256899999999999988777777778899999999999999999988876
No 179
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.87 E-value=0.00017 Score=84.32 Aligned_cols=135 Identities=21% Similarity=0.189 Sum_probs=81.6
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CC--CeEEEEeccHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AG--KQAMVLAPTIVLAKQ 154 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g--~~vlil~Pt~~La~Q 154 (643)
....+++...+.+++.|.+|+..+.. ..-.++.|+.|+|||.+.- .++..+. .+ ..+++++||-..|..
T Consensus 312 ~i~~~~~~~~~~l~~~Q~~Ai~~~~~-------~~~~iitGgpGTGKTt~l~-~i~~~~~~~~~~~~v~l~ApTg~AA~~ 383 (720)
T TIGR01448 312 HIWEVEKKLRKGLSEEQKQALDTAIQ-------HKVVILTGGPGTGKTTITR-AIIELAEELGGLLPVGLAAPTGRAAKR 383 (720)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHh-------CCeEEEECCCCCCHHHHHH-HHHHHHHHcCCCceEEEEeCchHHHHH
Confidence 44566777788999999999988753 3478999999999998752 3333332 34 678999999887775
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHH-H
Q 006476 155 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEK-I 233 (643)
Q Consensus 155 ~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~-l 233 (643)
+.+. . +.....+++ .+.. + .+-. ... ..-.....++|||||++.++...... +
T Consensus 384 L~e~----~----g~~a~Tih~---------lL~~---~-~~~~---~~~--~~~~~~~~~llIvDEaSMvd~~~~~~Ll 437 (720)
T TIGR01448 384 LGEV----T----GLTASTIHR---------LLGY---G-PDTF---RHN--HLEDPIDCDLLIVDESSMMDTWLALSLL 437 (720)
T ss_pred HHHh----c----CCccccHHH---------Hhhc---c-CCcc---chh--hhhccccCCEEEEeccccCCHHHHHHHH
Confidence 4322 1 222222221 1100 0 0000 000 00112456899999999998765544 4
Q ss_pred HhcCCCceEEEec
Q 006476 234 ASFKISVDVLTLS 246 (643)
Q Consensus 234 ~~~~~~~~vl~lS 246 (643)
+.++.+.++|++-
T Consensus 438 ~~~~~~~rlilvG 450 (720)
T TIGR01448 438 AALPDHARLLLVG 450 (720)
T ss_pred HhCCCCCEEEEEC
Confidence 5556667776643
No 180
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.86 E-value=4.1e-05 Score=82.26 Aligned_cols=50 Identities=26% Similarity=0.309 Sum_probs=43.3
Q ss_pred cEEEEccCCCchHHHHHHHHHHH--HHCCCeEEEEeccHHHHHHHHHHHHHH
Q 006476 113 DRLICGDVGFGKTEVALRAIFCV--VSAGKQAMVLAPTIVLAKQHFDVVSER 162 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~~i~~~--~~~g~~vlil~Pt~~La~Q~~~~~~~~ 162 (643)
-++|.|..|||||++++..+... ...+..++++++...|...+.+.+.+.
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~ 54 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKK 54 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhh
Confidence 47899999999999998777766 567889999999999999988888764
No 181
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.73 E-value=0.00023 Score=70.56 Aligned_cols=119 Identities=15% Similarity=0.165 Sum_probs=80.0
Q ss_pred HHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 82 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 82 ~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
|+=....-.+|.|.+...++.+ .+++.|.+.+.-+|.|||.|.+..+...+.+|.+.+.++=.+.|..|.++.+..
T Consensus 16 ~E~e~~iliR~~Q~~ia~~mi~----~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~ 91 (229)
T PF12340_consen 16 FEIESNILIRPVQVEIAREMIS----PPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRS 91 (229)
T ss_pred HHHHcCceeeHHHHHHHHHHhC----CCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 4444567899999998887764 345789999999999999997766666667776554444446899999999999
Q ss_pred HhcCCCCceEEE--EeCCCChH--H---HHHHHHHH-hcCCceEEEechHhhh
Q 006476 162 RFSKYPDIKVGL--LSRFQSKA--E---KEEHLDMI-KHGHLNIIVGTHSLLG 206 (643)
Q Consensus 162 ~~~~~~~i~v~~--l~g~~~~~--~---~~~~~~~l-~~g~~dIiI~T~~~L~ 206 (643)
+++...+-+|.. +++..... . ....++.. ++| .|+++||+.+.
T Consensus 92 ~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~--gill~~PEhil 142 (229)
T PF12340_consen 92 RLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSG--GILLATPEHIL 142 (229)
T ss_pred HHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcC--CEEEeChHHHH
Confidence 998764444433 33333221 1 11222222 233 59999998553
No 182
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.71 E-value=0.00025 Score=78.30 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=67.9
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC-CCeEEEEeccHHHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHF 156 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-g~~vlil~Pt~~La~Q~~ 156 (643)
+.+.|.....-++..-|..|+..++. ..-.||+||+|+|||.+....+++.+.. +.++||.+|+...+.|++
T Consensus 399 LP~~~s~~~lpkLN~SQ~~AV~~VL~-------rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLa 471 (935)
T KOG1802|consen 399 LPRRFSVPNLPKLNASQSNAVKHVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLA 471 (935)
T ss_pred CchhhcCCCchhhchHHHHHHHHHHc-------CCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHH
Confidence 34466666666999999999999986 2346999999999999876666665544 568999999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeC
Q 006476 157 DVVSERFSKYPDIKVGLLSR 176 (643)
Q Consensus 157 ~~~~~~~~~~~~i~v~~l~g 176 (643)
+.+.+- |++|.-+..
T Consensus 472 eKIh~t-----gLKVvRl~a 486 (935)
T KOG1802|consen 472 EKIHKT-----GLKVVRLCA 486 (935)
T ss_pred HHHHhc-----CceEeeeeh
Confidence 888763 677766654
No 183
>PF13245 AAA_19: Part of AAA domain
Probab=97.69 E-value=0.00012 Score=60.27 Aligned_cols=48 Identities=31% Similarity=0.337 Sum_probs=40.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHC----CCeEEEEeccHHHHHHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVV 159 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~~~----g~~vlil~Pt~~La~Q~~~~~ 159 (643)
.-++|.||.|||||...+..+...+.. ++++++++||+..+.++.+++
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 345669999999998887777776654 789999999999999887776
No 184
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.69 E-value=5.6e-05 Score=72.29 Aligned_cols=100 Identities=22% Similarity=0.332 Sum_probs=68.0
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc--cccccccccC--CCEE
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN--IVESGLDIQN--ANTI 374 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~--i~~~GiDip~--v~~V 374 (643)
.++.++||+++.+.++.+.+.++.......+.++.- +...+..+++.|++++-.||+|+. .+.+|+|+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 358999999999999999998876532112222332 245788999999999999999999 9999999997 6789
Q ss_pred EEecCCCCCH-----------------------------HHHHHHHhccCCCCCc
Q 006476 375 IVQDVQQFGL-----------------------------AQLYQLRGRVGRADKE 400 (643)
Q Consensus 375 I~~d~p~~s~-----------------------------~~~~Qr~GR~GR~g~~ 400 (643)
|+...|--++ ..+.|.+||+-|....
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D 140 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDD 140 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCC
Confidence 9888762111 1345999999999543
No 185
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.68 E-value=0.00017 Score=74.06 Aligned_cols=156 Identities=19% Similarity=0.119 Sum_probs=102.3
Q ss_pred CCCHHHHHHHHHhHH----hhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHHHHHHh
Q 006476 89 EPTPDQKKAFLDVER----DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK-QAMVLAPTIVLAKQHFDVVSERF 163 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~----~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~-~vlil~Pt~~La~Q~~~~~~~~~ 163 (643)
.++..|.+++--... .+ .+....-.++-..||.||..+..-.++....+|. +++++..+..|-....+.++. +
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~L-p~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~D-I 114 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQIL-PGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRD-I 114 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhc-ccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHH-h
Confidence 579999999753332 12 1234566788889999999997777777777765 699999999999999999987 5
Q ss_pred cCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc--------------ccc--Cc-cceEEeecccccc
Q 006476 164 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR--------------VVY--NN-LGLLVVDEEQRFG 226 (643)
Q Consensus 164 ~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~--------------~~~--~~-l~llViDEah~~g 226 (643)
+.. .+.+..+........ ..+.. .|+++|+..|... +.| .+ =++||+||||+..
T Consensus 115 G~~-~i~v~~l~~~~~~~~-----~~~~~---GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ak 185 (303)
T PF13872_consen 115 GAD-NIPVHPLNKFKYGDI-----IRLKE---GVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAK 185 (303)
T ss_pred CCC-cccceechhhccCcC-----CCCCC---CccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcC
Confidence 443 355555554221110 12233 4899998877532 111 12 2689999999862
Q ss_pred h---------hHH---HHHHhcCCCceEEEeccCCChHhHH
Q 006476 227 V---------KQK---EKIASFKISVDVLTLSATPIPRTLY 255 (643)
Q Consensus 227 ~---------~~~---~~l~~~~~~~~vl~lSATp~~~~~~ 255 (643)
. ++- -.+.+.-++.+++.+|||...+..+
T Consensus 186 n~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~N 226 (303)
T PF13872_consen 186 NLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEPRN 226 (303)
T ss_pred CCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCCce
Confidence 1 111 1233445788899999998544433
No 186
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.00089 Score=72.45 Aligned_cols=109 Identities=8% Similarity=0.201 Sum_probs=80.7
Q ss_pred CeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccc--cccccccCCCEEEEec
Q 006476 301 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV--ESGLDIQNANTIIVQD 378 (643)
Q Consensus 301 ~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~--~~GiDip~v~~VI~~d 378 (643)
.-++|+.|+--+--++-.++++. ++....+|--.+...-.++-+-|-.|...||+-|.-+ =+--++.+|..||.|.
T Consensus 553 s~~LiyIPSYfDFVRvRNy~K~e--~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYq 630 (698)
T KOG2340|consen 553 SGILIYIPSYFDFVRVRNYMKKE--EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQ 630 (698)
T ss_pred CceEEEecchhhHHHHHHHhhhh--hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEec
Confidence 45789999988777888888877 5555566655555666667777999999999999743 4667899999999999
Q ss_pred CCCCCH---HHHHHHHhccCCCC----CceEEEEEecCCCC
Q 006476 379 VQQFGL---AQLYQLRGRVGRAD----KEAHAYLFYPDKSL 412 (643)
Q Consensus 379 ~p~~s~---~~~~Qr~GR~GR~g----~~g~a~~l~~~~~~ 412 (643)
+|. .+ ++++.+.+|+.-.| ....|-++|+.-+.
T Consensus 631 pP~-~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 631 PPN-NPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred CCC-CcHHHHHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 997 44 45567887775443 33568888876543
No 187
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.64 E-value=0.0017 Score=74.26 Aligned_cols=144 Identities=22% Similarity=0.143 Sum_probs=85.6
Q ss_pred hhHHHHHhcCCCC--CCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHH--HHHHHHHHC--CCeEEEEeccHH
Q 006476 77 PAIAEFAAQFPYE--PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL--RAIFCVVSA--GKQAMVLAPTIV 150 (643)
Q Consensus 77 ~~~~~~~~~~~~~--~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l--~~i~~~~~~--g~~vlil~Pt~~ 150 (643)
.+.+.+...|+.. ..++|+.|+...+. ..-.+|.|++|+|||.+.. +..+..... ...+++++||.-
T Consensus 138 ~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~-------~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgk 210 (615)
T PRK10875 138 LLRQTLDALFGPVTDEVDWQKVAAAVALT-------RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGK 210 (615)
T ss_pred HHHHHHHHhcCcCCCCCHHHHHHHHHHhc-------CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHH
Confidence 3556666666543 46899999876653 3568999999999998853 333333222 357899999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEec-hHhhhc----------ccccCccceEEe
Q 006476 151 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT-HSLLGS----------RVVYNNLGLLVV 219 (643)
Q Consensus 151 La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T-~~~L~~----------~~~~~~l~llVi 219 (643)
-|..+.+.........+ +.-.... . ...-..| |..|.. .-..-.+++|||
T Consensus 211 AA~rL~e~~~~~~~~~~-~~~~~~~-----------------~-~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIv 271 (615)
T PRK10875 211 AAARLTESLGKALRQLP-LTDEQKK-----------------R-IPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVV 271 (615)
T ss_pred HHHHHHHHHHhhhhccc-cchhhhh-----------------c-CCCchHHHHHHhCcCCCccchhhccccCCCCCeEEE
Confidence 99988887765443321 1000000 0 0000111 222210 011234689999
Q ss_pred ecccccchhHHH-HHHhcCCCceEEEec
Q 006476 220 DEEQRFGVKQKE-KIASFKISVDVLTLS 246 (643)
Q Consensus 220 DEah~~g~~~~~-~l~~~~~~~~vl~lS 246 (643)
||+-........ .+..++++.++|++-
T Consensus 272 DEaSMvd~~lm~~ll~al~~~~rlIlvG 299 (615)
T PRK10875 272 DEASMVDLPMMARLIDALPPHARVIFLG 299 (615)
T ss_pred ChHhcccHHHHHHHHHhcccCCEEEEec
Confidence 999998776544 456667777777653
No 188
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.61 E-value=0.0017 Score=72.96 Aligned_cols=110 Identities=18% Similarity=0.248 Sum_probs=83.0
Q ss_pred CCeEEEEecCccChHHHHHHHHhhC-C---C------------CcEEEEeCCCCHHHHHHHHHHHhcCC---ceEEEecc
Q 006476 300 GGQVFYVLPRIKGLEEPMDFLQQAF-P---G------------VDIAIAHGQQYSRQLEETMEKFAQGA---IKILICTN 360 (643)
Q Consensus 300 ~~qvlvf~~~~~~~e~l~~~L~~~~-p---~------------~~v~~~hg~~~~~~r~~v~~~F~~g~---~~ILVaT~ 360 (643)
|.++++|.......+.+.+.|...- | + ..-..+.|..+..+|++.+++|.+.- .-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 4567777777777777777775431 1 1 13445778888999999999998632 35888999
Q ss_pred cccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEE--EecCC
Q 006476 361 IVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYL--FYPDK 410 (643)
Q Consensus 361 i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~--l~~~~ 410 (643)
....|||+-.++.+|++|+.. +..--.|.+-|+-|.|++-.||+ ++-+.
T Consensus 799 ag~lGinLIsanr~~ifda~w-npchdaqavcRvyrYGQ~KpcfvYRlVmD~ 849 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACW-NPCHDAQAVCRVYRYGQQKPCFVYRLVMDN 849 (1387)
T ss_pred cccccceeeccceEEEEEeec-CccccchhhhhhhhhcCcCceeEEeehhhh
Confidence 999999999999999999985 88777898999999987766665 44433
No 189
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.58 E-value=0.0017 Score=74.15 Aligned_cols=129 Identities=23% Similarity=0.174 Sum_probs=76.5
Q ss_pred CHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHH--HHHHHHHHC---CCeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 91 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL--RAIFCVVSA---GKQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 91 tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l--~~i~~~~~~---g~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
.++|+.|+..++. ..-.+|.|+.|+|||.+.. +.++..... +.++++.+||---|..+.+.....+..
T Consensus 147 ~~~Qk~A~~~al~-------~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~ 219 (586)
T TIGR01447 147 QNWQKVAVALALK-------SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKN 219 (586)
T ss_pred cHHHHHHHHHHhh-------CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcc
Confidence 4899999887765 3568999999999998853 333332222 257999999998888877766553322
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEec-hHhhh----------cccccCccceEEeecccccchhHHHH-H
Q 006476 166 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT-HSLLG----------SRVVYNNLGLLVVDEEQRFGVKQKEK-I 233 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T-~~~L~----------~~~~~~~l~llViDEah~~g~~~~~~-l 233 (643)
.+ .. .. .... ..+-..| |..|. +.-....+++|||||+-......... +
T Consensus 220 l~-~~---------~~----~~~~-----~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll 280 (586)
T TIGR01447 220 LA-AA---------EA----LIAA-----LPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLL 280 (586)
T ss_pred cc-cc---------hh----hhhc-----cccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHH
Confidence 21 00 00 0000 0011112 11111 11122357899999999987765544 4
Q ss_pred HhcCCCceEEEe
Q 006476 234 ASFKISVDVLTL 245 (643)
Q Consensus 234 ~~~~~~~~vl~l 245 (643)
..++++.++|++
T Consensus 281 ~al~~~~rlIlv 292 (586)
T TIGR01447 281 KALPPNTKLILL 292 (586)
T ss_pred HhcCCCCEEEEE
Confidence 556667777654
No 190
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.58 E-value=0.00069 Score=61.32 Aligned_cols=112 Identities=21% Similarity=0.205 Sum_probs=57.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHH------CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHH-
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK- 183 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~------~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~- 183 (643)
..-+++.|++|+|||.++-..+..... ....+.+-+|...-...++..+...++... .. ..+..+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~------~~~~~~l~ 76 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPL-KS------RQTSDELR 76 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS-SS------TS-HHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccc-cc------cCCHHHHH
Confidence 456899999999999887655544432 233344445544434555555555554332 11 1112111
Q ss_pred HHHHHHHhcCCceEEEechHhhhcccccCccceEEeeccccc-chhHHHHHHhc--CCCceEEEeccCC
Q 006476 184 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRF-GVKQKEKIASF--KISVDVLTLSATP 249 (643)
Q Consensus 184 ~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~-g~~~~~~l~~~--~~~~~vl~lSATp 249 (643)
....+.+.. ....+|||||+|++ .....+.++.+ ..+.++ .+++||
T Consensus 77 ~~~~~~l~~-------------------~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~v-vl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDR-------------------RRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKV-VLVGTP 125 (131)
T ss_dssp HHHHHHHHH-------------------CTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEE-EEEESS
T ss_pred HHHHHHHHh-------------------cCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeE-EEEECh
Confidence 111111111 22268999999998 65555666555 334444 466666
No 191
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.40 E-value=0.003 Score=74.35 Aligned_cols=123 Identities=20% Similarity=0.178 Sum_probs=76.2
Q ss_pred CCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 86 ~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
..+.+++.|.+|+..++. + ..-.+|.|+.|+|||.+.- ++...+ ..|..+++++||--.|..+.+. .
T Consensus 349 ~~~~Ls~~Q~~Av~~i~~----s--~~~~il~G~aGTGKTtll~-~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~----~- 416 (744)
T TIGR02768 349 QHYRLSEEQYEAVRHVTG----S--GDIAVVVGRAGTGKSTMLK-AAREAWEAAGYRVIGAALSGKAAEGLQAE----S- 416 (744)
T ss_pred ccCCCCHHHHHHHHHHhc----C--CCEEEEEecCCCCHHHHHH-HHHHHHHhCCCeEEEEeCcHHHHHHHHhc----c-
Confidence 346899999999988864 1 2467999999999997743 233333 3588999999998777654321 1
Q ss_pred CCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHh-c-CCCceE
Q 006476 165 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIAS-F-KISVDV 242 (643)
Q Consensus 165 ~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~-~-~~~~~v 242 (643)
++....+++. +.....+ ...+...++|||||+-.++......+.. . ..+.++
T Consensus 417 ---g~~a~Ti~~~---------~~~~~~~--------------~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~~~~kl 470 (744)
T TIGR02768 417 ---GIESRTLASL---------EYAWANG--------------RDLLSDKDVLVIDEAGMVGSRQMARVLKEAEEAGAKV 470 (744)
T ss_pred ---CCceeeHHHH---------HhhhccC--------------cccCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEE
Confidence 3333222221 0001111 1124577899999999988766554433 2 345666
Q ss_pred EEec
Q 006476 243 LTLS 246 (643)
Q Consensus 243 l~lS 246 (643)
|++-
T Consensus 471 iLVG 474 (744)
T TIGR02768 471 VLVG 474 (744)
T ss_pred EEEC
Confidence 5543
No 192
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.35 E-value=0.00063 Score=67.24 Aligned_cols=84 Identities=24% Similarity=0.373 Sum_probs=45.2
Q ss_pred ccceEEeecccccchhHHHHHHhcCCCceE-EEeccCCChHhHHHHH-----hcC-CCcceeeCCCCCccceeEEEccCC
Q 006476 213 NLGLLVVDEEQRFGVKQKEKIASFKISVDV-LTLSATPIPRTLYLAL-----TGF-RDASLISTPPPERLPIKTHLSAFS 285 (643)
Q Consensus 213 ~l~llViDEah~~g~~~~~~l~~~~~~~~v-l~lSATp~~~~~~~~~-----~~~-~~~~~i~~~~~~~~~v~~~~~~~~ 285 (643)
.-+++.|||.|||.-.+.+.+-..-.+..+ +...++|..++..+.+ .|- .....+..|-.+|+.+...+..++
T Consensus 101 ~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~ 180 (233)
T PF05496_consen 101 EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYS 180 (233)
T ss_dssp TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----T
T ss_pred CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCC
Confidence 345899999999988777766544345554 5566666443321111 110 122234445567888888888888
Q ss_pred HHHHHHHHHHH
Q 006476 286 KEKVISAIKYE 296 (643)
Q Consensus 286 ~~~~~~~i~~~ 296 (643)
.+.+...+.+.
T Consensus 181 ~~el~~Iv~r~ 191 (233)
T PF05496_consen 181 EEELAKIVKRS 191 (233)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 88887777653
No 193
>PRK04296 thymidine kinase; Provisional
Probab=97.29 E-value=0.00058 Score=66.73 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=31.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
+-.++.||+|+|||..++..+......+.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 346889999999999998888888788999999877
No 194
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.25 E-value=0.00082 Score=70.33 Aligned_cols=67 Identities=22% Similarity=0.265 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC----CeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG----KQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 90 ~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g----~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
+|+.|.++|.. . ..+++|.|..|||||.+.+.-+...+..+ .+++++++|+..|.++.+++.+.++.
T Consensus 1 l~~eQ~~~i~~-~--------~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS-T--------EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS----------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC-C--------CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 68899999765 2 46899999999999999877766666554 58999999999999999999876544
No 195
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.24 E-value=0.00099 Score=71.91 Aligned_cols=74 Identities=24% Similarity=0.298 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHH--HHHHHHHh
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH--FDVVSERF 163 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~--~~~~~~~~ 163 (643)
+|++.|++++..+++.+. ...+..+.+.|+-|+|||.+.-...-..-..++.+++++||-..|..+ -.++.+.|
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~-~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f 76 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIE-NEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFF 76 (364)
T ss_pred CCCHHHHHHHHHHHHHHH-ccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhc
Confidence 478999999999987764 366889999999999999764322222223467899999998888765 34444433
No 196
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.20 E-value=0.0061 Score=59.84 Aligned_cols=124 Identities=20% Similarity=0.173 Sum_probs=70.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec--cHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHH-HHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP--TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK-EEHLD 188 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P--t~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~-~~~~~ 188 (643)
+-++++||||+|||....-.+.....+++++.+++- .|.=|.++.+.+.+.+ ++.+.......+..+. .+.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l----~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEIL----GVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHH----TEEEEESSTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHh----ccccchhhcchhhHHHHHHHHH
Confidence 447899999999999987666666555777777663 4667777777777654 4444443322222211 11111
Q ss_pred HHhcCCceEEEechHhhhcccccCccceEEeecccccch--hH----HHHHHhcCCCceEEEeccCCChHhHHHHH
Q 006476 189 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV--KQ----KEKIASFKISVDVLTLSATPIPRTLYLAL 258 (643)
Q Consensus 189 ~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~--~~----~~~l~~~~~~~~vl~lSATp~~~~~~~~~ 258 (643)
. ..-+++++|+||-+-+-.. .. .+.+....+..-.+.+|||..........
T Consensus 78 ~-------------------~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 78 K-------------------FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp H-------------------HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH
T ss_pred H-------------------HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH
Confidence 1 1234577888888865422 11 22233334556678899998777665443
No 197
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.20 E-value=0.0036 Score=64.27 Aligned_cols=43 Identities=30% Similarity=0.379 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHH
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
.|-+++.+.+++..+...+. ..+..++++|++|+|||..+-..
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~--~~~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 21 FFYPSKGHKRAMAYLEYGLS--QREGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred HhCCCHHHHHHHHHHHHHHh--cCCCEEEEEcCCCCCHHHHHHHH
Confidence 35778888888887755432 22346889999999999886544
No 198
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.007 Score=65.50 Aligned_cols=123 Identities=14% Similarity=0.117 Sum_probs=69.1
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHH----HCCCeEEEEe--ccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVV----SAGKQAMVLA--PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 183 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~----~~g~~vlil~--Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~ 183 (643)
.+..++++||||+|||+++.-.+.... ..|+.|.++. +.|.-+..+...+.+.+ ++.+..... ....
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~l----gvpv~~~~~---~~~l 245 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIM----GIPVKAIES---FKDL 245 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcC----CcceEeeCc---HHHH
Confidence 356789999999999999754443332 2356666554 33455555555554432 344433321 1111
Q ss_pred HHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchh--HH----HHHHhcCCC-ceEEEeccCCChHhHHH
Q 006476 184 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVK--QK----EKIASFKIS-VDVLTLSATPIPRTLYL 256 (643)
Q Consensus 184 ~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~--~~----~~l~~~~~~-~~vl~lSATp~~~~~~~ 256 (643)
... +. .+.++++|+||++.+.... +. +.+....++ -.+|.+|||-.......
T Consensus 246 ~~~------------------L~---~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~ 304 (388)
T PRK12723 246 KEE------------------IT---QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE 304 (388)
T ss_pred HHH------------------HH---HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH
Confidence 111 11 2467899999999886422 11 222333333 45789999987776654
Q ss_pred HHhc
Q 006476 257 ALTG 260 (643)
Q Consensus 257 ~~~~ 260 (643)
....
T Consensus 305 ~~~~ 308 (388)
T PRK12723 305 IFHQ 308 (388)
T ss_pred HHHH
Confidence 4433
No 199
>PRK08181 transposase; Validated
Probab=97.17 E-value=0.0038 Score=64.23 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=49.4
Q ss_pred CCCChhHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHH
Q 006476 73 YPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 152 (643)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La 152 (643)
||...-.+.|.-.+...+.+.|..++....+.+ ..+.+++++||+|+|||-.+...+...+..|..|+++. ...|.
T Consensus 71 ~p~~~tle~fd~~~~~~~~~~~~~~L~~~~~~~---~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-~~~L~ 146 (269)
T PRK08181 71 LPPGKTLDSFDFEAVPMVSKAQVMAIAAGDSWL---AKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-TTDLV 146 (269)
T ss_pred CCCCCCHhhCCccCCCCCCHHHHHHHHHHHHHH---hcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-HHHHH
Confidence 343333344433333355778888876543333 23678999999999999777655556666787776654 34555
Q ss_pred HHH
Q 006476 153 KQH 155 (643)
Q Consensus 153 ~Q~ 155 (643)
.+.
T Consensus 147 ~~l 149 (269)
T PRK08181 147 QKL 149 (269)
T ss_pred HHH
Confidence 543
No 200
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.16 E-value=0.0053 Score=55.69 Aligned_cols=53 Identities=23% Similarity=0.291 Sum_probs=32.2
Q ss_pred HHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEecc
Q 006476 95 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148 (643)
Q Consensus 95 ~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt 148 (643)
...+..+...+. ...+..+++.||+|+|||..+...+......+..++++...
T Consensus 4 ~~~~~~i~~~~~-~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 4 EEAIEALREALE-LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred HHHHHHHHHHHh-CCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 344444444332 33467899999999999976655444443345556655544
No 201
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.12 E-value=0.0063 Score=67.07 Aligned_cols=123 Identities=20% Similarity=0.203 Sum_probs=70.2
Q ss_pred EccCCCchHHHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHHHHHH------hcCC-----CCceEEEEeCCCChHHHH
Q 006476 117 CGDVGFGKTEVALRAIFCVVSAGK-QAMVLAPTIVLAKQHFDVVSER------FSKY-----PDIKVGLLSRFQSKAEKE 184 (643)
Q Consensus 117 ~a~TGsGKT~~~l~~i~~~~~~g~-~vlil~Pt~~La~Q~~~~~~~~------~~~~-----~~i~v~~l~g~~~~~~~~ 184 (643)
.+.||||||++....|+.....|. ..++.|.......-.-..|..- |... ..+.+--+..+..
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fse----- 77 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSE----- 77 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCc-----
Confidence 468999999998888888877775 5677777665555544433221 1100 0123333333221
Q ss_pred HHHHHHhcCCceEEEechHhhhccc-----------ccCccce-EEeecccccchhHHHHH---------------Hhc-
Q 006476 185 EHLDMIKHGHLNIIVGTHSLLGSRV-----------VYNNLGL-LVVDEEQRFGVKQKEKI---------------ASF- 236 (643)
Q Consensus 185 ~~~~~l~~g~~dIiI~T~~~L~~~~-----------~~~~l~l-lViDEah~~g~~~~~~l---------------~~~- 236 (643)
.+..+.|+++|-+.|..++ .+.+..+ .+-||||++....+..+ ..+
T Consensus 78 ------hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~ 151 (812)
T COG3421 78 ------HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE 151 (812)
T ss_pred ------cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh
Confidence 1234889999987775322 2344555 56799999743222111 111
Q ss_pred -CCCceEEEeccCCC
Q 006476 237 -KISVDVLTLSATPI 250 (643)
Q Consensus 237 -~~~~~vl~lSATp~ 250 (643)
.++.-++.+|||.+
T Consensus 152 ~nkd~~~lef~at~~ 166 (812)
T COG3421 152 QNKDNLLLEFSATIP 166 (812)
T ss_pred cCCCceeehhhhcCC
Confidence 34555778899965
No 202
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.09 E-value=0.025 Score=73.03 Aligned_cols=235 Identities=15% Similarity=0.161 Sum_probs=125.8
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
.+.+++.|.+|+..++. ....-.+|.|+.|+|||.+.- ++.... ..|.+|++++||-.-|.++.+...
T Consensus 427 ~~~Ls~~Q~~Av~~il~-----s~~~v~ii~G~aGTGKTt~l~-~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~g----- 495 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFT-----STKRFIIINGFGGTGSTEIAQ-LLLHLASEQGYEIQIITAGSLSAQELRQKIP----- 495 (1960)
T ss_pred cCCCCHHHHHHHHHHHh-----CCCCeEEEEECCCCCHHHHHH-HHHHHHHhcCCeEEEEeCCHHHHHHHHHHhc-----
Confidence 46899999999998875 224668999999999997742 223333 358899999999887776544321
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEech-HhhhcccccCccceEEeecccccchhHHHHHHh-c-CCCceE
Q 006476 166 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH-SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIAS-F-KISVDV 242 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~-~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~-~-~~~~~v 242 (643)
+....++ ..+..+..+ .-..|- +.+.....+..-++||||||-.++......|.. . ..+.++
T Consensus 496 ---~~A~Ti~---------~~l~~l~~~---~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~garv 560 (1960)
T TIGR02760 496 ---RLASTFI---------TWVKNLFND---DQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNELLKLIDKAEQHNSKL 560 (1960)
T ss_pred ---chhhhHH---------HHHHhhccc---ccchhHHHhhcccCCCCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCEE
Confidence 1111111 111111111 001111 112222334567899999999999877666554 3 467888
Q ss_pred EEeccCC------ChHhHHHHHh-cCCCcceeeCCCCCccceeEEEccC-CHH---HHHHHHHHHHhcCCeEEEEecCcc
Q 006476 243 LTLSATP------IPRTLYLALT-GFRDASLISTPPPERLPIKTHLSAF-SKE---KVISAIKYELDRGGQVFYVLPRIK 311 (643)
Q Consensus 243 l~lSATp------~~~~~~~~~~-~~~~~~~i~~~~~~~~~v~~~~~~~-~~~---~~~~~i~~~l~~~~qvlvf~~~~~ 311 (643)
|++-=+- ....+..... ++.-..+..+. ....++ .+... +.. .+.+..........+++++.++..
T Consensus 561 VlvGD~~QL~sV~aG~~f~~L~~~gv~t~~l~~i~-rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv~~t~~ 637 (1960)
T TIGR02760 561 ILLNDSAQRQGMSAGSAIDLLKEGGVTTYAWVDTK-QQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVLATTHR 637 (1960)
T ss_pred EEEcChhhcCccccchHHHHHHHCCCcEEEeeccc-ccCcce--eeeccCchHHHHHHHHHHHhcccccCceEEEcCCcH
Confidence 8765441 1123332222 22111111111 111122 12222 222 233333322233446888888888
Q ss_pred ChHHHHHHHHhhC--------CCCcEEEEe-CCCCHHHHHHHHHHHhcC
Q 006476 312 GLEEPMDFLQQAF--------PGVDIAIAH-GQQYSRQLEETMEKFAQG 351 (643)
Q Consensus 312 ~~e~l~~~L~~~~--------p~~~v~~~h-g~~~~~~r~~v~~~F~~g 351 (643)
+...+...++... ++..+..+. ..|+..++... ..|+.|
T Consensus 638 dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 638 EQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred HHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 8888888877643 123333333 35676666633 555554
No 203
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.08 E-value=0.0078 Score=72.18 Aligned_cols=124 Identities=19% Similarity=0.159 Sum_probs=77.4
Q ss_pred CCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CCCeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 86 ~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
..+.+++.|.+|+..++. + ..-+++.|..|+|||.+ +.++...+. .|.+|+.++||-..|..+.+
T Consensus 343 ~g~~Ls~eQr~Av~~il~----s--~~v~vv~G~AGTGKTT~-l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e------- 408 (988)
T PRK13889 343 RGLVLSGEQADALAHVTD----G--RDLGVVVGYAGTGKSAM-LGVAREAWEAAGYEVRGAALSGIAAENLEG------- 408 (988)
T ss_pred cCCCCCHHHHHHHHHHhc----C--CCeEEEEeCCCCCHHHH-HHHHHHHHHHcCCeEEEecCcHHHHHHHhh-------
Confidence 356899999999998864 1 23578999999999987 444544443 48899999999876654321
Q ss_pred CCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHhc--CCCceE
Q 006476 165 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF--KISVDV 242 (643)
Q Consensus 165 ~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~--~~~~~v 242 (643)
-.|+....+++ .+.....+ ...+...++|||||+-.++......+... ..+.++
T Consensus 409 -~tGi~a~TI~s---------ll~~~~~~--------------~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~~garv 464 (988)
T PRK13889 409 -GSGIASRTIAS---------LEHGWGQG--------------RDLLTSRDVLVIDEAGMVGTRQLERVLSHAADAGAKV 464 (988)
T ss_pred -ccCcchhhHHH---------HHhhhccc--------------ccccccCcEEEEECcccCCHHHHHHHHHhhhhCCCEE
Confidence 11232211111 11000111 11245668999999999888776655432 456666
Q ss_pred EEecc
Q 006476 243 LTLSA 247 (643)
Q Consensus 243 l~lSA 247 (643)
|++-=
T Consensus 465 VLVGD 469 (988)
T PRK13889 465 VLVGD 469 (988)
T ss_pred EEECC
Confidence 66543
No 204
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.08 E-value=0.0049 Score=70.51 Aligned_cols=137 Identities=21% Similarity=0.279 Sum_probs=80.1
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHC-C-CeEEEEeccHHHHHHHHHH---HHHHh-cC-CCCceEEEEeCCCChHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSA-G-KQAMVLAPTIVLAKQHFDV---VSERF-SK-YPDIKVGLLSRFQSKAE 182 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~-g-~~vlil~Pt~~La~Q~~~~---~~~~~-~~-~~~i~v~~l~g~~~~~~ 182 (643)
..-++=|.+.||+|||.+|+..++..... | .+-+|+|||.+.-.-++.+ ..+.| +. +.+.+...+.-. +
T Consensus 73 ~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~----~ 148 (985)
T COG3587 73 DKLNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD----E 148 (985)
T ss_pred CcceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec----h
Confidence 35577789999999999999999876544 3 3789999998765443322 22333 21 112233333221 1
Q ss_pred HHHHHHHHhcCCceEEEechHhhhcc-----------cccCc-----------c----ceEEeecccccch--hHHHHHH
Q 006476 183 KEEHLDMIKHGHLNIIVGTHSLLGSR-----------VVYNN-----------L----GLLVVDEEQRFGV--KQKEKIA 234 (643)
Q Consensus 183 ~~~~~~~l~~g~~dIiI~T~~~L~~~-----------~~~~~-----------l----~llViDEah~~g~--~~~~~l~ 234 (643)
.......-.++.+.+++.|-....+. ....+ + -.+||||=|+|.. +....+.
T Consensus 149 ~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~k~~~~i~ 228 (985)
T COG3587 149 DIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDDKTYGAIK 228 (985)
T ss_pred HHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccchHHHHHHH
Confidence 11111222345678888776544321 01111 1 2699999999955 4455566
Q ss_pred hcCCCceEEEeccCCCh
Q 006476 235 SFKISVDVLTLSATPIP 251 (643)
Q Consensus 235 ~~~~~~~vl~lSATp~~ 251 (643)
.+ ...-++=++||...
T Consensus 229 ~l-~pl~ilRfgATfkd 244 (985)
T COG3587 229 QL-NPLLILRFGATFKD 244 (985)
T ss_pred hh-CceEEEEecccchh
Confidence 66 34557779999644
No 205
>PRK06526 transposase; Provisional
Probab=97.06 E-value=0.0044 Score=63.32 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=30.2
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
.+.+++++||+|+|||..+...+......|..|++...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 36789999999999998887666666777888777443
No 206
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.05 E-value=0.019 Score=58.25 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHhHHhhccC-CCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEE
Q 006476 90 PTPDQKKAFLDVERDLTER-ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145 (643)
Q Consensus 90 ~tp~Q~~ai~~i~~~~~~~-~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil 145 (643)
.++.|..|+..+.+....- .....++++|++|+|||..+...+......|..|+++
T Consensus 77 ~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 77 ECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred CCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3567877877665432111 1124789999999999988766555556667777766
No 207
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.02 E-value=0.0041 Score=68.45 Aligned_cols=113 Identities=18% Similarity=0.285 Sum_probs=95.1
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHCC--CeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHH
Q 006476 113 DRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~~i~~~~~~g--~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l 190 (643)
+.+-+..+++||+...++++.+.+..| +.++|.+-+.+-|.|.+..+. .+++++|.+++|..+..+++..++.+
T Consensus 359 ~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~----~~~~i~v~vIh~e~~~~qrde~~~~F 434 (593)
T KOG0344|consen 359 ETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELE----IYDNINVDVIHGERSQKQRDETMERF 434 (593)
T ss_pred hhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhh----hccCcceeeEecccchhHHHHHHHHH
Confidence 344556679999999999998888775 688999999999999988875 34589999999999999999999999
Q ss_pred hcCCceEEEechHhhhcccccCccceEEeecccccchhHH
Q 006476 191 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK 230 (643)
Q Consensus 191 ~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~ 230 (643)
+.|++.++|||. .|.+.+.|.++.+||.+.....+....
T Consensus 435 R~g~IwvLicTd-ll~RGiDf~gvn~VInyD~p~s~~syi 473 (593)
T KOG0344|consen 435 RIGKIWVLICTD-LLARGIDFKGVNLVINYDFPQSDLSYI 473 (593)
T ss_pred hccCeeEEEehh-hhhccccccCcceEEecCCCchhHHHH
Confidence 999999999994 566668999999999988877655433
No 208
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.99 E-value=0.02 Score=69.20 Aligned_cols=122 Identities=20% Similarity=0.142 Sum_probs=77.9
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
.+.+++.|.+|+..+.. ...-.++.|+.|+|||.+.- ++...+ ..|.+|+.++||---|..+.+. .
T Consensus 379 ~~~Ls~eQ~~Av~~i~~------~~r~~~v~G~AGTGKTt~l~-~~~~~~e~~G~~V~g~ApTgkAA~~L~e~----~-- 445 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAG------PARIAAVVGRAGAGKTTMMK-AAREAWEAAGYRVVGGALAGKAAEGLEKE----A-- 445 (1102)
T ss_pred CCCCCHHHHHHHHHHhc------cCCeEEEEeCCCCCHHHHHH-HHHHHHHHcCCeEEEEcCcHHHHHHHHHh----h--
Confidence 57899999999988742 13567999999999997743 333333 4588999999998777654321 1
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHh-c-CCCceEE
Q 006476 166 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIAS-F-KISVDVL 243 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~-~-~~~~~vl 243 (643)
|+....+.++. .....| ...+..-++|||||+...+..+...+.+ . ..+.++|
T Consensus 446 --Gi~a~TIas~l---------l~~~~~--------------~~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~~~garvV 500 (1102)
T PRK13826 446 --GIQSRTLSSWE---------LRWNQG--------------RDQLDNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLV 500 (1102)
T ss_pred --CCCeeeHHHHH---------hhhccC--------------ccCCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEE
Confidence 44444443310 001111 1234556799999999998877655433 3 2456666
Q ss_pred Eec
Q 006476 244 TLS 246 (643)
Q Consensus 244 ~lS 246 (643)
++-
T Consensus 501 LVG 503 (1102)
T PRK13826 501 LVG 503 (1102)
T ss_pred EEC
Confidence 654
No 209
>PRK14974 cell division protein FtsY; Provisional
Probab=96.94 E-value=0.04 Score=58.54 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=68.3
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEecc--HHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT--IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 187 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt--~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~ 187 (643)
++.-++++|++|+|||.+....+......|.+++++... |.-+..+.......+ ++.+.....+.+.... ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~~~~g~dp~~v--~~ 212 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERL----GVKVIKHKYGADPAAV--AY 212 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHc----CCceecccCCCCHHHH--HH
Confidence 356688999999999998765555445567777776543 333333333333333 3433322111111110 01
Q ss_pred HHHhcCCceEEEechHhhhcccccCccceEEeecccccch--hHHHHHH----hcCCCceEEEeccCCChHhHHHH
Q 006476 188 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV--KQKEKIA----SFKISVDVLTLSATPIPRTLYLA 257 (643)
Q Consensus 188 ~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~--~~~~~l~----~~~~~~~vl~lSATp~~~~~~~~ 257 (643)
..+. .....++++|+||.+.+... ...+.++ ...++..++.++||........+
T Consensus 213 ~ai~----------------~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a 272 (336)
T PRK14974 213 DAIE----------------HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA 272 (336)
T ss_pred HHHH----------------HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH
Confidence 1100 11124568999999998742 2222332 23567778899999765555433
No 210
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.93 E-value=0.0054 Score=71.01 Aligned_cols=126 Identities=19% Similarity=0.181 Sum_probs=82.0
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCC
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 166 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~ 166 (643)
...++.+|++|+..++. . ..-.||.|=+|+|||.+....+--.+..|++||+.+-|...+..+.-.++. +
T Consensus 667 ~~~LN~dQr~A~~k~L~---a---edy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~----~ 736 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALA---A---EDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKG----F 736 (1100)
T ss_pred HhhcCHHHHHHHHHHHh---c---cchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhc----c
Confidence 34899999999988775 2 245799999999999997666666667899999999998888777665553 2
Q ss_pred CCceEEEEeCCC---------------ChHHHHHHHHHHhcCCceEEEechHhhhccc-ccCccceEEeeccccc
Q 006476 167 PDIKVGLLSRFQ---------------SKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-VYNNLGLLVVDEEQRF 225 (643)
Q Consensus 167 ~~i~v~~l~g~~---------------~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~-~~~~l~llViDEah~~ 225 (643)
++.+.-+-... +.+.-...... -+.+.||.+|---+.+.+ ..+.+++.|||||-.+
T Consensus 737 -~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~--~~~~~IVa~TClgi~~plf~~R~FD~cIiDEASQI 808 (1100)
T KOG1805|consen 737 -GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKF--LDQTSIVACTCLGINHPLFVNRQFDYCIIDEASQI 808 (1100)
T ss_pred -CcceeecCCccccchHHHHHhcccccchhhHHHHHHH--hCCCcEEEEEccCCCchhhhccccCEEEEcccccc
Confidence 23322221111 11111111111 145789988843333222 2367899999999864
No 211
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.90 E-value=0.0054 Score=70.38 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=40.5
Q ss_pred HHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHH
Q 006476 81 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133 (643)
Q Consensus 81 ~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~ 133 (643)
.+.=.|||+|+|.|..-+..++..+. +..+.++..|||+|||+..+-..+
T Consensus 13 Gv~V~fP~qpY~~Q~a~M~rvl~~L~---~~q~~llESPTGTGKSLsLLCS~L 62 (945)
T KOG1132|consen 13 GVPVEFPFQPYPTQLAFMTRVLSCLD---RKQNGLLESPTGTGKSLSLLCSTL 62 (945)
T ss_pred CceeeccCCcchHHHHHHHHHHHHHH---HhhhhhccCCCCCCccHHHHHHHH
Confidence 44457899999999999999988663 357789999999999998654443
No 212
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.026 Score=60.73 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=65.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec--cHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP--TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 188 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P--t~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~ 188 (643)
+..+.++||||+|||..+...+......|+++.++.- -|.-+.+....+.+.. ++.+.... +.......+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~l----gipv~v~~---d~~~L~~aL~ 313 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI----GFEVIAVR---DEAAMTRALT 313 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhc----CCcEEecC---CHHHHHHHHH
Confidence 4678999999999999986666655666777766553 3433333333333322 33433322 2222222222
Q ss_pred HHhcCCceEEEechHhhhcccccCccceEEeecccccch--h----HHHHHHhcCCCceEEEeccCCChHhHHHHH
Q 006476 189 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV--K----QKEKIASFKISVDVLTLSATPIPRTLYLAL 258 (643)
Q Consensus 189 ~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~--~----~~~~l~~~~~~~~vl~lSATp~~~~~~~~~ 258 (643)
.+.. ..++++|+||-+=+... . ....+....+..-++.+|||...+......
T Consensus 314 ~lk~------------------~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~ 371 (436)
T PRK11889 314 YFKE------------------EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 371 (436)
T ss_pred HHHh------------------ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHH
Confidence 1111 12467788887755321 1 122333334454567899997666543333
No 213
>PRK10689 transcription-repair coupling factor; Provisional
Probab=96.87 E-value=0.0071 Score=74.07 Aligned_cols=95 Identities=17% Similarity=0.300 Sum_probs=81.8
Q ss_pred HHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccc
Q 006476 131 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV 210 (643)
Q Consensus 131 ~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~ 210 (643)
.++..+.++.+++|++|++.-+..+++.+++. +|+.++..++|..+..++...+..+.+|+++|+|||. .+...+.
T Consensus 801 ~il~el~r~gqv~vf~n~i~~ie~la~~L~~~---~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-IierGID 876 (1147)
T PRK10689 801 AILREILRGGQVYYLYNDVENIQKAAERLAEL---VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-IIETGID 876 (1147)
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHh---CCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-hhhcccc
Confidence 44555667889999999999888888888764 3567899999999999999999999999999999994 5667788
Q ss_pred cCccceEEeecccccchhH
Q 006476 211 YNNLGLLVVDEEQRFGVKQ 229 (643)
Q Consensus 211 ~~~l~llViDEah~~g~~~ 229 (643)
+.++++||++.+++|+..+
T Consensus 877 IP~v~~VIi~~ad~fglaq 895 (1147)
T PRK10689 877 IPTANTIIIERADHFGLAQ 895 (1147)
T ss_pred cccCCEEEEecCCCCCHHH
Confidence 9999999999999998754
No 214
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.015 Score=61.76 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=28.8
Q ss_pred ceEEeecccccchhHHHHHHhcCCCceEEEeccCC
Q 006476 215 GLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 249 (643)
Q Consensus 215 ~llViDEah~~g~~~~~~l~~~~~~~~vl~lSATp 249 (643)
-+++|||+|||.-.+.+.+...-.+-.++++-||-
T Consensus 106 tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATT 140 (436)
T COG2256 106 TILFLDEIHRFNKAQQDALLPHVENGTIILIGATT 140 (436)
T ss_pred eEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccC
Confidence 47999999999887777776666788888899985
No 215
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.84 E-value=0.0076 Score=72.21 Aligned_cols=95 Identities=18% Similarity=0.286 Sum_probs=81.8
Q ss_pred HHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccc
Q 006476 131 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV 210 (643)
Q Consensus 131 ~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~ 210 (643)
.+...+.++.+++|++|+..-+..+++.+++. +|+.++..++|..+..++...+..+.+|+.+|+|+|. .+...++
T Consensus 652 ~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~---~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-iie~GID 727 (926)
T TIGR00580 652 AIRRELLRGGQVFYVHNRIESIEKLATQLREL---VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-IIETGID 727 (926)
T ss_pred HHHHHHHcCCeEEEEECCcHHHHHHHHHHHHh---CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-hhhcccc
Confidence 34455677899999999999888888888764 3578999999999999999999999999999999995 6667788
Q ss_pred cCccceEEeecccccchhH
Q 006476 211 YNNLGLLVVDEEQRFGVKQ 229 (643)
Q Consensus 211 ~~~l~llViDEah~~g~~~ 229 (643)
+.++++||++.++++|..+
T Consensus 728 Ip~v~~VIi~~a~~~gls~ 746 (926)
T TIGR00580 728 IPNANTIIIERADKFGLAQ 746 (926)
T ss_pred cccCCEEEEecCCCCCHHH
Confidence 9999999999999998754
No 216
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=96.80 E-value=0.0073 Score=71.89 Aligned_cols=100 Identities=15% Similarity=0.279 Sum_probs=85.9
Q ss_pred HHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccccc
Q 006476 132 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVY 211 (643)
Q Consensus 132 i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~ 211 (643)
+++.+.+|+||.+|.|..+=..+..+.+++. .|..+|++.||.++..+.++......+|++||+|||- .+-..+..
T Consensus 796 I~REl~RgGQvfYv~NrV~~Ie~~~~~L~~L---VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-IIEtGIDI 871 (1139)
T COG1197 796 ILRELLRGGQVFYVHNRVESIEKKAERLREL---VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-IIETGIDI 871 (1139)
T ss_pred HHHHHhcCCEEEEEecchhhHHHHHHHHHHh---CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-eeecCcCC
Confidence 4455678999999999999999999999875 4679999999999999999999999999999999994 23345677
Q ss_pred CccceEEeecccccchhHHHHHHh
Q 006476 212 NNLGLLVVDEEQRFGVKQKEKIAS 235 (643)
Q Consensus 212 ~~l~llViDEah~~g~~~~~~l~~ 235 (643)
.|-..+||+-||+||..+.-.|+-
T Consensus 872 PnANTiIIe~AD~fGLsQLyQLRG 895 (1139)
T COG1197 872 PNANTIIIERADKFGLAQLYQLRG 895 (1139)
T ss_pred CCCceEEEeccccccHHHHHHhcc
Confidence 888999999999999988766654
No 217
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.79 E-value=0.01 Score=68.70 Aligned_cols=93 Identities=12% Similarity=0.142 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccc
Q 006476 285 SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 364 (643)
Q Consensus 285 ~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~ 364 (643)
..+.+...+...+..|++++|.+|.+..+..+.+.|+..|++..++.+|+++++.+|.+.+.+..+|+.+|+|.|-.+-
T Consensus 173 KTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv- 251 (665)
T PRK14873 173 WARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV- 251 (665)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE-
Confidence 3456778888889999999999999999999999999999767899999999999999999999999999999997542
Q ss_pred cccccCCCEEEEec
Q 006476 365 GLDIQNANTIIVQD 378 (643)
Q Consensus 365 GiDip~v~~VI~~d 378 (643)
=.=++|...||+.+
T Consensus 252 FaP~~~LgLIIvdE 265 (665)
T PRK14873 252 FAPVEDLGLVAIWD 265 (665)
T ss_pred EeccCCCCEEEEEc
Confidence 23456667777654
No 218
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.78 E-value=0.011 Score=59.76 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=32.3
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
+..++..+.+.. ....+..++++||+|+|||-.+...+......|.++.++.-
T Consensus 29 n~~a~~~l~~~~-~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 29 NDSLLAALQNAL-RQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred cHHHHHHHHHHH-hCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 344444443322 23345689999999999997765444444445666666544
No 219
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=96.76 E-value=0.0097 Score=67.15 Aligned_cols=115 Identities=26% Similarity=0.450 Sum_probs=86.4
Q ss_pred HHHHHHCCCeEEEEeccHH--------HHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechH
Q 006476 132 IFCVVSAGKQAMVLAPTIV--------LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203 (643)
Q Consensus 132 i~~~~~~g~~vlil~Pt~~--------La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~ 203 (643)
+...+..|.|+.|+||..+ -|...++.++.. +|+.++++++|..+..++++..+..++|+.||+|+|.=
T Consensus 466 i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~---~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTV 542 (677)
T COG1200 466 IREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSF---LPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTV 542 (677)
T ss_pred HHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHH---cccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeE
Confidence 3445567999999999864 455556666533 46789999999999999999999999999999999942
Q ss_pred hhhcccccCccceEEeecccccchhHHHHHHhc----CCCceEEEeccCCC
Q 006476 204 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF----KISVDVLTLSATPI 250 (643)
Q Consensus 204 ~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~----~~~~~vl~lSATp~ 250 (643)
+-=.++..|-.++||..|+|||..+.-.|+-. ......++++..|.
T Consensus 543 -IEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 543 -IEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred -EEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 11125678889999999999999877666543 12334666666654
No 220
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.73 E-value=0.0025 Score=57.21 Aligned_cols=42 Identities=24% Similarity=0.174 Sum_probs=28.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 152 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La 152 (643)
+..+++.||+|+|||..+...+......+..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence 457899999999999887655544433333577777765433
No 221
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.73 E-value=0.034 Score=61.93 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=24.2
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~ 133 (643)
|..+...+.+.+..+.-+...|++||+|+|||..+-..+-
T Consensus 19 q~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 19 QDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4444444433332222234579999999999988755443
No 222
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.70 E-value=0.11 Score=57.05 Aligned_cols=123 Identities=17% Similarity=0.107 Sum_probs=65.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH--HCCCeEEEEe--ccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLA--PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 186 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~--~~g~~vlil~--Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~ 186 (643)
+..++++||||+|||..+...+.... ..+.+|.++. |.+.-+.+....+.+.+ ++.+..... ..+....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~----~vp~~~~~~---~~~l~~~ 293 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIM----GIPVEVVYD---PKELAKA 293 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHh----CCceEccCC---HHhHHHH
Confidence 45789999999999998765554443 4466676654 23333333333333322 333332221 1111111
Q ss_pred HHHHhcCCceEEEechHhhhcccccCccceEEeecccccch--hHH----HHHHhc-CCCceEEEeccCCChHhHHHHHh
Q 006476 187 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV--KQK----EKIASF-KISVDVLTLSATPIPRTLYLALT 259 (643)
Q Consensus 187 ~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~--~~~----~~l~~~-~~~~~vl~lSATp~~~~~~~~~~ 259 (643)
+. .+.++++|+||.+-+... ... +.+... .+....+.+|||..+..+.....
T Consensus 294 ------------------l~---~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~ 352 (424)
T PRK05703 294 ------------------LE---QLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYK 352 (424)
T ss_pred ------------------HH---HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHH
Confidence 11 134678999998865422 111 222211 22344788999998877765544
Q ss_pred cC
Q 006476 260 GF 261 (643)
Q Consensus 260 ~~ 261 (643)
.+
T Consensus 353 ~f 354 (424)
T PRK05703 353 HF 354 (424)
T ss_pred Hh
Confidence 44
No 223
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.69 E-value=0.008 Score=70.30 Aligned_cols=99 Identities=22% Similarity=0.397 Sum_probs=83.1
Q ss_pred HHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cccccccc
Q 006476 292 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-IVESGLDI 368 (643)
Q Consensus 292 ~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p--~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~-i~~~GiDi 368 (643)
.+...+..+.+++|.+|+..-+...++.++..++ ++++..+||+++..++..++....+|+.+|+|+|. .+...+.+
T Consensus 302 ~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~ 381 (681)
T PRK10917 302 AALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEF 381 (681)
T ss_pred HHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchh
Confidence 4445566788999999999999999888887764 47899999999999999999999999999999997 45567889
Q ss_pred cCCCEEEEecCCCCCHHHHHHH
Q 006476 369 QNANTIIVQDVQQFGLAQLYQL 390 (643)
Q Consensus 369 p~v~~VI~~d~p~~s~~~~~Qr 390 (643)
+++.+||+....+|+..+....
T Consensus 382 ~~l~lvVIDE~Hrfg~~qr~~l 403 (681)
T PRK10917 382 HNLGLVIIDEQHRFGVEQRLAL 403 (681)
T ss_pred cccceEEEechhhhhHHHHHHH
Confidence 9999999988888776554433
No 224
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.69 E-value=0.012 Score=67.79 Aligned_cols=137 Identities=19% Similarity=0.242 Sum_probs=88.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH---------HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeC-CCCh
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVV---------SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR-FQSK 180 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~---------~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g-~~~~ 180 (643)
-.-.|+.-+.|-|||...+..++..- ..++..|+++|+ .+..||..++ .....-..+.+.+++| ....
T Consensus 152 ~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~el-ek~~~~~~l~v~v~~gr~kd~ 229 (674)
T KOG1001|consen 152 LRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTEL-EKVTEEDKLSIYVYHGRTKDK 229 (674)
T ss_pred cccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHH-hccCCccceEEEEeccccccc
Confidence 45568899999999999876665432 134567888886 6778888888 4454444677888887 2222
Q ss_pred HHHHHHHHHHhcCCceEEEechHhhhc-ccccCccceEEeecccccchhHHHHHHhc--CCCceEEEeccCCChHhHHHH
Q 006476 181 AEKEEHLDMIKHGHLNIIVGTHSLLGS-RVVYNNLGLLVVDEEQRFGVKQKEKIASF--KISVDVLTLSATPIPRTLYLA 257 (643)
Q Consensus 181 ~~~~~~~~~l~~g~~dIiI~T~~~L~~-~~~~~~l~llViDEah~~g~~~~~~l~~~--~~~~~vl~lSATp~~~~~~~~ 257 (643)
.+ + ..+|||++|++.+.. .+.--.+-.+|+||||..........+.. -.....-.+|+||+.......
T Consensus 230 ~e-------l--~~~dVVltTy~il~~~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~l 300 (674)
T KOG1001|consen 230 SE-------L--NSYDVVLTTYDILKNSPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDEL 300 (674)
T ss_pred ch-------h--cCCceEEeeHHHhhcccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHH
Confidence 21 1 348899999999873 22223344699999998754332222211 122344568999988766544
Q ss_pred H
Q 006476 258 L 258 (643)
Q Consensus 258 ~ 258 (643)
.
T Consensus 301 y 301 (674)
T KOG1001|consen 301 Y 301 (674)
T ss_pred H
Confidence 3
No 225
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.66 E-value=0.041 Score=61.73 Aligned_cols=42 Identities=19% Similarity=0.090 Sum_probs=29.2
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
.|..++..+.+.+..+.-+...|++||.|+|||.++-..+-.
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 467776666554444444567899999999999988555443
No 226
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.63 E-value=0.0093 Score=69.15 Aligned_cols=97 Identities=21% Similarity=0.397 Sum_probs=82.8
Q ss_pred HHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccc-cccccc
Q 006476 291 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-VESGLD 367 (643)
Q Consensus 291 ~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p--~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i-~~~GiD 367 (643)
-.+...+..+.++++.+|+..-++..++.+++.++ ++++..+||+++..++..+++...+|+.+|+|+|.. +...++
T Consensus 275 l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~ 354 (630)
T TIGR00643 275 LAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVE 354 (630)
T ss_pred HHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcccc
Confidence 34555667789999999999999999998888765 589999999999999999999999999999999974 455688
Q ss_pred ccCCCEEEEecCCCCCHHHH
Q 006476 368 IQNANTIIVQDVQQFGLAQL 387 (643)
Q Consensus 368 ip~v~~VI~~d~p~~s~~~~ 387 (643)
+.++.+||+....+|+..+.
T Consensus 355 ~~~l~lvVIDEaH~fg~~qr 374 (630)
T TIGR00643 355 FKRLALVIIDEQHRFGVEQR 374 (630)
T ss_pred ccccceEEEechhhccHHHH
Confidence 89999999988888876654
No 227
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.011 Score=65.35 Aligned_cols=42 Identities=21% Similarity=0.175 Sum_probs=27.7
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
.|..++..+.+.+..+.-+.-.|++||.|+|||.++...+-.
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 366666665554433322344799999999999988655443
No 228
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.54 E-value=0.015 Score=65.58 Aligned_cols=89 Identities=24% Similarity=0.314 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccc
Q 006476 289 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368 (643)
Q Consensus 289 ~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDi 368 (643)
....+...+..+++++|.+|++.-+..+++.|++.+ +..+.++||+++..+|.+.+.+..+|+.+|+|+|..+-. ..+
T Consensus 14 ~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f-~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~ 91 (505)
T TIGR00595 14 YLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRF-GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPF 91 (505)
T ss_pred HHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh-CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-Ccc
Confidence 345566667788999999999999999999999877 567899999999999999999999999999999975332 457
Q ss_pred cCCCEEEEecC
Q 006476 369 QNANTIIVQDV 379 (643)
Q Consensus 369 p~v~~VI~~d~ 379 (643)
+++..||+...
T Consensus 92 ~~l~lIIVDEe 102 (505)
T TIGR00595 92 KNLGLIIVDEE 102 (505)
T ss_pred cCCCEEEEECC
Confidence 78888887654
No 229
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.52 E-value=0.0093 Score=69.36 Aligned_cols=80 Identities=21% Similarity=0.225 Sum_probs=59.6
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC----CCeEEEEeccHHHHHHHHHHHHHH
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSER 162 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~----g~~vlil~Pt~~La~Q~~~~~~~~ 162 (643)
...+++.|.+|+-.- ..+++|.|..|||||.+.+.-+...+.. +.++++++.|+..|..+.+++.++
T Consensus 194 ~~~L~~~Q~~av~~~---------~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 194 SSPLNPSQARAVVNG---------EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCCHHHHHHHhCC---------CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 368999999996321 2457999999999999986665544433 458999999999999999999876
Q ss_pred hcCCCCceEEEEeC
Q 006476 163 FSKYPDIKVGLLSR 176 (643)
Q Consensus 163 ~~~~~~i~v~~l~g 176 (643)
++. .++.+..+++
T Consensus 265 lg~-~~v~v~TFHS 277 (684)
T PRK11054 265 LGT-EDITARTFHA 277 (684)
T ss_pred cCC-CCcEEEeHHH
Confidence 652 2455555554
No 230
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.51 E-value=0.083 Score=60.23 Aligned_cols=168 Identities=14% Similarity=0.088 Sum_probs=95.3
Q ss_pred CCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CCCeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 86 ~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
.|.-|.|.=.+=|+++.+.+. .+-.++.+|=|.|||.+..+.+...+. .|..++|.+|...-+.+++++++..+.
T Consensus 166 np~~~~~~~~~~id~~~~~fk----q~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 166 NPEAPSPRTLREIDRIFDEYG----KCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CcCCCChhhHHHHHHHHHHHh----hcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 355677888888888877553 345688899999999986544433333 688999999999999999998887765
Q ss_pred C------CCCc-eEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHhc-
Q 006476 165 K------YPDI-KVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF- 236 (643)
Q Consensus 165 ~------~~~i-~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~- 236 (643)
. +|.. ++..+.++...-.-. .-...+.|...|..++.. .+...-.+.+++|+|||+.+.......+.-.
T Consensus 242 ~lg~~~~fp~~~~iv~vkgg~E~I~f~-~p~gak~G~sti~F~Ars--~~s~RG~~~DLLIVDEAAfI~~~~l~aIlP~l 318 (752)
T PHA03333 242 AYQHKPWFPEEFKIVTLKGTDENLEYI-SDPAAKEGKTTAHFLASS--PNAARGQNPDLVIVDEAAFVNPGALLSVLPLM 318 (752)
T ss_pred HhccccccCCCceEEEeeCCeeEEEEe-cCcccccCcceeEEeccc--CCCcCCCCCCEEEEECcccCCHHHHHHHHHHH
Confidence 2 2211 112122211000000 000001111223332211 0112223568999999999887665554332
Q ss_pred -CCCceEEEeccCCChHhHHHHHhc
Q 006476 237 -KISVDVLTLSATPIPRTLYLALTG 260 (643)
Q Consensus 237 -~~~~~vl~lSATp~~~~~~~~~~~ 260 (643)
..+.+++.+|.+-.....-..+..
T Consensus 319 ~~~~~k~IiISS~~~~~s~tS~L~n 343 (752)
T PHA03333 319 AVKGTKQIHISSPVDADSWISRVGE 343 (752)
T ss_pred ccCCCceEEEeCCCCcchHHHHhhh
Confidence 135666677777544444333333
No 231
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.49 E-value=0.02 Score=65.68 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=28.2
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
|..++..+.+.+..+.-+...|++||.|+|||..+...+-.
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 66666666554433333556799999999999887655443
No 232
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.48 E-value=0.02 Score=66.94 Aligned_cols=89 Identities=22% Similarity=0.303 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccccccccc
Q 006476 290 ISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 369 (643)
Q Consensus 290 ~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip 369 (643)
...+...+..+.+++|.+|++.-+..+++.+++.+ +..+..+||+++..+|.+.+.+..+|+.+|+|+|..+. -+.++
T Consensus 180 l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~ 257 (679)
T PRK05580 180 LQAIAEVLAQGKQALVLVPEIALTPQMLARFRARF-GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFK 257 (679)
T ss_pred HHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh-CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-ccccc
Confidence 34455556678899999999999999999999877 57899999999999999999999999999999997433 25677
Q ss_pred CCCEEEEecCC
Q 006476 370 NANTIIVQDVQ 380 (643)
Q Consensus 370 ~v~~VI~~d~p 380 (643)
++..||+....
T Consensus 258 ~l~liVvDEeh 268 (679)
T PRK05580 258 NLGLIIVDEEH 268 (679)
T ss_pred CCCEEEEECCC
Confidence 88888876654
No 233
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.047 Score=60.82 Aligned_cols=40 Identities=25% Similarity=0.269 Sum_probs=26.9
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~ 133 (643)
|..++..+.+.+..+.-+...|++||.|+|||..+...+.
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHH
Confidence 5555555544443334456799999999999998865543
No 234
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.39 E-value=0.023 Score=62.52 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=24.5
Q ss_pred ccceEEeecccccchhHHHHHHhcCCCceEEEeccCC
Q 006476 213 NLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 249 (643)
Q Consensus 213 ~l~llViDEah~~g~~~~~~l~~~~~~~~vl~lSATp 249 (643)
.-.+|+|||+|++...+...+...-.+..++++.+|.
T Consensus 92 ~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCC
Confidence 4568999999999776655554443445566666653
No 235
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.022 Score=66.05 Aligned_cols=89 Identities=22% Similarity=0.279 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccccc
Q 006476 286 KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 365 (643)
Q Consensus 286 ~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~G 365 (643)
.+.+..++...+..|.|+|+.+|.+.....+.+.++.+|+ .+++++|+++++.+|.+.+.+..+|+.+|+|.|-.+- =
T Consensus 231 TEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-F 308 (730)
T COG1198 231 TEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG-AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-F 308 (730)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC-CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-c
Confidence 3678899999999999999999999999999999999995 8999999999999999999999999999999997531 2
Q ss_pred ccccCCCEEEE
Q 006476 366 LDIQNANTIIV 376 (643)
Q Consensus 366 iDip~v~~VI~ 376 (643)
.=++|.-.||+
T Consensus 309 ~Pf~~LGLIIv 319 (730)
T COG1198 309 LPFKNLGLIIV 319 (730)
T ss_pred CchhhccEEEE
Confidence 34566667775
No 236
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.36 E-value=0.077 Score=61.04 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=26.8
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
|..++..+.+.+..+.-+.-.|+.||.|+|||.++...+..
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 66666666655533222333589999999999987555433
No 237
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.35 E-value=0.0079 Score=70.18 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC-C---CeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-G---KQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-g---~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
.++|.|.+|+... ...++|.|..|||||.+...-+...+.. | .++++++.|+..|.++.+++.+.++
T Consensus 2 ~Ln~~Q~~av~~~---------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV---------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC---------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4899999997532 3568999999999999987666666643 2 4799999999999999999987665
Q ss_pred CC--CCceEEEEeC
Q 006476 165 KY--PDIKVGLLSR 176 (643)
Q Consensus 165 ~~--~~i~v~~l~g 176 (643)
.. .++.++.+|+
T Consensus 73 ~~~~~~v~i~TfHS 86 (672)
T PRK10919 73 RKEARGLMISTFHT 86 (672)
T ss_pred cccccCcEEEcHHH
Confidence 32 2355555554
No 238
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.032 Score=62.84 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=27.8
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~ 135 (643)
|..++..+.+.+..+.-+.-.|++||.|+|||.++...+-..
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 666666665555333334446999999999998876554433
No 239
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=96.34 E-value=0.025 Score=65.52 Aligned_cols=87 Identities=22% Similarity=0.315 Sum_probs=76.1
Q ss_pred HHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCcc
Q 006476 135 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNL 214 (643)
Q Consensus 135 ~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l 214 (643)
...+|.+++|.++|+.-+..+.+.+.+. ++++..+++..+..++.+.+..++.|+++|+||| +.+...+.+.++
T Consensus 438 ~~~~g~~vLIf~~tk~~ae~L~~~L~~~-----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-~~L~rGfDiP~v 511 (655)
T TIGR00631 438 RVARNERVLVTTLTKKMAEDLTDYLKEL-----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-NLLREGLDLPEV 511 (655)
T ss_pred HHcCCCEEEEEECCHHHHHHHHHHHhhh-----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-ChhcCCeeeCCC
Confidence 3456889999999999999988888764 6889999998888899999999999999999999 567778889999
Q ss_pred ceEEeecccccch
Q 006476 215 GLLVVDEEQRFGV 227 (643)
Q Consensus 215 ~llViDEah~~g~ 227 (643)
+++|+-+++.+|.
T Consensus 512 ~lVvi~DadifG~ 524 (655)
T TIGR00631 512 SLVAILDADKEGF 524 (655)
T ss_pred cEEEEeCcccccC
Confidence 9999999988876
No 240
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.33 E-value=0.075 Score=60.90 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=29.6
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~ 135 (643)
|..++..+.+.+..+.-+...|++||.|+|||..+...+-..
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 666666666555444445678999999999999986655433
No 241
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.30 E-value=0.072 Score=53.33 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=25.2
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
.+..++++|++|+|||..+-.........+..++++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3567999999999999776544444444555555544
No 242
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.065 Score=57.68 Aligned_cols=120 Identities=17% Similarity=0.144 Sum_probs=66.8
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHH-HCC-CeEEEEec-c-HHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVV-SAG-KQAMVLAP-T-IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEE 185 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~-~~g-~~vlil~P-t-~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~ 185 (643)
++..++++||||+|||..+...+.... ..| .++.++.. + +.-+.++...+.+.+ ++.+..+...... ..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~----gv~~~~~~~~~~l---~~ 208 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKIL----GVPVHAVKDGGDL---QL 208 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHc----CCceEecCCcccH---HH
Confidence 467899999999999999766655544 334 45555442 1 333555555555433 3444433321111 11
Q ss_pred HHHHHhcCCceEEEechHhhhcccccCccceEEeecccccch--hHHHHHHhc----CCCceEEEeccCCChHhHHHH
Q 006476 186 HLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV--KQKEKIASF----KISVDVLTLSATPIPRTLYLA 257 (643)
Q Consensus 186 ~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~--~~~~~l~~~----~~~~~vl~lSATp~~~~~~~~ 257 (643)
.+ ..+.+.++|+||.+=+... ...+.+..+ .+...+|.+|||.....+...
T Consensus 209 ~l---------------------~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 209 AL---------------------AELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred HH---------------------HHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH
Confidence 11 1245678899999965421 122333333 123448889999877766543
No 243
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.28 E-value=0.13 Score=55.21 Aligned_cols=124 Identities=18% Similarity=0.209 Sum_probs=71.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH--HCCCeEEEEe-cc-HHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLA-PT-IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 186 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~--~~g~~vlil~-Pt-~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~ 186 (643)
++.+.++||||.|||+...-.+.... ...++|.+++ -| |.=|..+.+...+.+ ++.+.++.. ..+-...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im----~vp~~vv~~---~~el~~a 275 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIM----GVPLEVVYS---PKELAEA 275 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHh----CCceEEecC---HHHHHHH
Confidence 67889999999999998543333333 3445555544 33 566666666655544 455665553 3333333
Q ss_pred HHHHhcCCceEEEechHhhhcccccCccceEEeecccccch--hHHHHHHhc----CCCceEEEeccCCChHhHHHHHhc
Q 006476 187 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV--KQKEKIASF----KISVDVLTLSATPIPRTLYLALTG 260 (643)
Q Consensus 187 ~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~--~~~~~l~~~----~~~~~vl~lSATp~~~~~~~~~~~ 260 (643)
+. .+.++++|.||=+=+-.. ...+.++.+ .+.--.|.+|||...+.+......
T Consensus 276 i~---------------------~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~ 334 (407)
T COG1419 276 IE---------------------ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQ 334 (407)
T ss_pred HH---------------------HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHH
Confidence 22 256667888887765311 122223222 233446789999877777665554
Q ss_pred CC
Q 006476 261 FR 262 (643)
Q Consensus 261 ~~ 262 (643)
+.
T Consensus 335 f~ 336 (407)
T COG1419 335 FS 336 (407)
T ss_pred hc
Confidence 43
No 244
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.27 E-value=0.074 Score=61.55 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=26.7
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
|..++..+.+.+..+.-+.-.|++|+.|+|||..+...+..
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKa 61 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKA 61 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 66666666554433222344589999999999887654443
No 245
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.27 E-value=0.07 Score=58.75 Aligned_cols=52 Identities=21% Similarity=0.237 Sum_probs=34.5
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEecc--HHHHHHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT--IVLAKQHFDVVSE 161 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt--~~La~Q~~~~~~~ 161 (643)
++..++++|++|+|||.++...+......|.+++++..- +.-+.++...+.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~ 147 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAE 147 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 467789999999999999866665555667777776532 3334444444443
No 246
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.25 E-value=0.043 Score=56.71 Aligned_cols=52 Identities=23% Similarity=0.252 Sum_probs=36.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe--ccHHHHHHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA--PTIVLAKQHFDVVSER 162 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~--Pt~~La~Q~~~~~~~~ 162 (643)
++-++++|++|+|||.++...+......|++|+++. +.|.-+.+....+.++
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~ 125 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKR 125 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 456788999999999998766665566778887775 3455555555555443
No 247
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.23 E-value=0.34 Score=51.20 Aligned_cols=52 Identities=27% Similarity=0.313 Sum_probs=34.3
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe-cc-HHHHHHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA-PT-IVLAKQHFDVVSE 161 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~-Pt-~~La~Q~~~~~~~ 161 (643)
.+.-++++||+|+|||+.+...+......|++|+++. .+ +..+.++...+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~ 166 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGE 166 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHH
Confidence 3566788999999999997655555556677777764 33 4444444444444
No 248
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.18 E-value=0.028 Score=70.18 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=79.1
Q ss_pred HHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHH--HHHHHHHHH--CCCeEEEEeccHHHHHHHH
Q 006476 81 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA--LRAIFCVVS--AGKQAMVLAPTIVLAKQHF 156 (643)
Q Consensus 81 ~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~--l~~i~~~~~--~g~~vlil~Pt~~La~Q~~ 156 (643)
.+.......+++.|.+|+..++. ...+-++|.|..|+|||.+. +..++..+. .+..++.++||---+..+.
T Consensus 827 ~~~~~~~~~Lt~~Qr~Av~~iLt-----s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 827 RVPGELMEKLTSGQRAATRMILE-----TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred hhhhhhhcccCHHHHHHHHHHHh-----CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHH
Confidence 34444445899999999998875 12356899999999999884 333343332 3678999999987776642
Q ss_pred HHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHh-
Q 006476 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIAS- 235 (643)
Q Consensus 157 ~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~- 235 (643)
+. |+....++++..... . .. ..........+++||||+-.++......+..
T Consensus 902 ----e~-----Gi~A~TIasfL~~~~----------~--------~~-~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~ 953 (1623)
T PRK14712 902 ----SA-----GVDAQTLASFLHDTQ----------L--------QQ-RSGETPDFSNTLFLLDESSMVGNTDMARAYAL 953 (1623)
T ss_pred ----Hh-----CchHhhHHHHhcccc----------c--------hh-hcccCCCCCCcEEEEEccccccHHHHHHHHHh
Confidence 21 333333332211000 0 00 0001112335799999999988866554433
Q ss_pred cC-CCceEEEeccC
Q 006476 236 FK-ISVDVLTLSAT 248 (643)
Q Consensus 236 ~~-~~~~vl~lSAT 248 (643)
.. .+.++|++-=+
T Consensus 954 ~~~~garvVLVGD~ 967 (1623)
T PRK14712 954 IAAGGGRAVASGDT 967 (1623)
T ss_pred hhhCCCEEEEEcch
Confidence 32 24566665433
No 249
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.15 E-value=0.046 Score=50.62 Aligned_cols=50 Identities=16% Similarity=0.347 Sum_probs=37.9
Q ss_pred EEeCCCCHHHHHHHHHHHhcCC-ceEEEecccccccccccC--CCEEEEecCC
Q 006476 331 IAHGQQYSRQLEETMEKFAQGA-IKILICTNIVESGLDIQN--ANTIIVQDVQ 380 (643)
Q Consensus 331 ~~hg~~~~~~r~~v~~~F~~g~-~~ILVaT~i~~~GiDip~--v~~VI~~d~p 380 (643)
++.-+....+...+++.|++.. ..||++|.-+++|+|+|+ ++.||+...|
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 3333445556789999998754 379999988999999998 4678887755
No 250
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.15 E-value=0.04 Score=64.49 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=26.8
Q ss_pred CccceEEeecccccchhHHHHHHhcCCCceEEEeccCC
Q 006476 212 NNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 249 (643)
Q Consensus 212 ~~l~llViDEah~~g~~~~~~l~~~~~~~~vl~lSATp 249 (643)
.+..++||||+|+|...+...+...-.+.++++.+||.
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTT 145 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATT 145 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecC
Confidence 34568999999999776555555544556777777774
No 251
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.041 Score=62.85 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=26.6
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
|..+...+.+.+..+.-+.-.|++||.|+|||..+...+-.
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 55555555554433333445699999999999887555443
No 252
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.043 Score=62.00 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=27.4
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHH
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~ 133 (643)
-|..++..+.+.+..+.-+.-.|++||.|+|||..+...+-
T Consensus 20 Gq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 20 GQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 36666666665553322233478999999999998865543
No 253
>PHA02533 17 large terminase protein; Provisional
Probab=96.10 E-value=0.11 Score=58.81 Aligned_cols=123 Identities=19% Similarity=0.153 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHH-HHHHHH-HCCCeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR-AIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~-~i~~~~-~~g~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
|+.|.|+|...+..+.. .+-.++.-+=..|||.++.. ++..++ ..+.++++++|+..-|..+++.++..+.
T Consensus 57 Pf~L~p~Q~~i~~~~~~-------~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHK-------NRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred ecCCcHHHHHHHHHHhc-------CeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 68999999998876631 23346777788999998653 333333 4567999999999999999998887665
Q ss_pred CCCCc-eEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccc
Q 006476 165 KYPDI-KVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFG 226 (643)
Q Consensus 165 ~~~~i-~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g 226 (643)
..|.+ +...... +. ..-.+.+| ..|.+.|... +...=.+..++|+||+|...
T Consensus 130 ~~P~l~~~~i~~~--~~-----~~I~l~NG-S~I~~lss~~--~t~rG~~~~~liiDE~a~~~ 182 (534)
T PHA02533 130 LLPDFLQPGIVEW--NK-----GSIELENG-SKIGAYASSP--DAVRGNSFAMIYIDECAFIP 182 (534)
T ss_pred hCHHHhhcceeec--Cc-----cEEEeCCC-CEEEEEeCCC--CccCCCCCceEEEeccccCC
Confidence 55432 1111110 00 00011344 3443333221 11122356789999999764
No 254
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.09 E-value=0.071 Score=62.29 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHhHHhhccCCCCCcE-EEEccCCCchHHHHHHH
Q 006476 90 PTPDQKKAFLDVERDLTERETPMDR-LICGDVGFGKTEVALRA 131 (643)
Q Consensus 90 ~tp~Q~~ai~~i~~~~~~~~~~~d~-li~a~TGsGKT~~~l~~ 131 (643)
-+..|.+.|..++.+...+..+.++ +|.|+||+|||.+.-..
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~V 801 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSV 801 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHH
Confidence 3667777777777654433444555 59999999999886443
No 255
>PRK08727 hypothetical protein; Validated
Probab=96.07 E-value=0.044 Score=55.30 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=25.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
...++++|++|+|||-.+-..+......|.+++++.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 345899999999999766544444555677777764
No 256
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.13 Score=57.76 Aligned_cols=41 Identities=22% Similarity=0.154 Sum_probs=26.1
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
|..+...+.+.+....-+.-.|++||.|+|||.++...+-.
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 66666655544433222334599999999999997544433
No 257
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.05 E-value=0.14 Score=60.86 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=27.5
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~ 135 (643)
|..++..+.+.+..+.-+.-.|++|+.|+|||.++...+...
T Consensus 20 qe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 20 QEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 566666555544332323346899999999999986655444
No 258
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.02 E-value=0.068 Score=53.25 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=32.1
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEE
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vli 144 (643)
.+..++..+.+.. ....+..+++.|++|+|||..+...+......+..+++
T Consensus 21 ~~~~~~~~l~~~~-~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~ 71 (226)
T TIGR03420 21 GNAELLAALRQLA-AGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIY 71 (226)
T ss_pred CcHHHHHHHHHHH-hcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEE
Confidence 3455565555432 23456789999999999998876554444444444444
No 259
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.05 Score=58.72 Aligned_cols=41 Identities=24% Similarity=0.257 Sum_probs=27.4
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHH
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~ 133 (643)
.|..++..+.+.+..+.-+.-.++.||.|+|||..+...+-
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHH
Confidence 46777766655443323334468999999999988755443
No 260
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.15 Score=60.07 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=25.4
Q ss_pred HHHHHHHhHHhhccCCCCCc-EEEEccCCCchHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMD-RLICGDVGFGKTEVALRAIF 133 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d-~li~a~TGsGKT~~~l~~i~ 133 (643)
|..++..+.+.+. ..+-.. .|++||.|+|||.++...+.
T Consensus 21 Qe~Iv~~LknaI~-~~rl~HAyLFtGPpGtGKTTLARiLAk 60 (944)
T PRK14949 21 QSHVLHALTNALT-QQRLHHAYLFTGTRGVGKTSLARLFAK 60 (944)
T ss_pred cHHHHHHHHHHHH-hCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 6666655554443 233334 48999999999998755443
No 261
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.99 E-value=0.035 Score=53.56 Aligned_cols=100 Identities=19% Similarity=0.181 Sum_probs=64.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHh
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 191 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~ 191 (643)
+=-+++||..||||+..+..+......|.++++..|-. -.+++ ........+.+.
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i----------D~R~~----~~~V~Sr~G~~~----------- 59 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI----------DTRYG----VGKVSSRIGLSS----------- 59 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc----------ccccc----cceeeeccCCcc-----------
Confidence 44589999999999999998888888899999999952 12322 111111111111
Q ss_pred cCCceEEEechHhhhcccc----cCccceEEeecccccchhHHHHHHhcCCC
Q 006476 192 HGHLNIIVGTHSLLGSRVV----YNNLGLLVVDEEQRFGVKQKEKIASFKIS 239 (643)
Q Consensus 192 ~g~~dIiI~T~~~L~~~~~----~~~l~llViDEah~~g~~~~~~l~~~~~~ 239 (643)
.-++|-.+.-+.+.+. ..+.++|.|||||-|...+...+.++..+
T Consensus 60 ---~A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~~~v~~l~~lad~ 108 (201)
T COG1435 60 ---EAVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDEELVYVLNELADR 108 (201)
T ss_pred ---cceecCChHHHHHHHHhcccCCCcCEEEEehhHhCCHHHHHHHHHHHhh
Confidence 1233333333333221 11278999999999998888888777543
No 262
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.98 E-value=0.053 Score=59.27 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=28.6
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHH
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~ 135 (643)
.|..+...+.+.+..+.-+...|++||.|+|||.++...+-..
T Consensus 20 Gq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 20 AQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred ChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 3666666665544333334458899999999999986654433
No 263
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.98 E-value=0.044 Score=50.85 Aligned_cols=66 Identities=20% Similarity=0.394 Sum_probs=43.2
Q ss_pred hHHHHHHHHhhCC---CCcEEEEeCCCCHHHHHHHHHHHhcCCc---eEEEeccc--ccccccccC--CCEEEEecCC
Q 006476 313 LEEPMDFLQQAFP---GVDIAIAHGQQYSRQLEETMEKFAQGAI---KILICTNI--VESGLDIQN--ANTIIVQDVQ 380 (643)
Q Consensus 313 ~e~l~~~L~~~~p---~~~v~~~hg~~~~~~r~~v~~~F~~g~~---~ILVaT~i--~~~GiDip~--v~~VI~~d~p 380 (643)
++.+++.++.... +.. .+.-+. ...+...+++.|++..- .||+|+.- +++|||+|+ ++.||+.+.|
T Consensus 4 m~~v~~~~~~~~~~~~~~~-i~~e~~-~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 4 LEQVVEYWKENGILEINKP-VFIEGK-DSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred HHHHHHHHHhcCccccCce-EEEECC-CCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 4556666665421 122 233333 23345788999987543 69999887 999999998 5788887766
No 264
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.98 E-value=0.11 Score=56.81 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=35.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec--cHHHHHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP--TIVLAKQHFDVVSE 161 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P--t~~La~Q~~~~~~~ 161 (643)
+.-++++|++|+|||+++.-.+......|.+|++++- .|.-|.++.+.+.+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~ 152 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNAT 152 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhh
Confidence 4567899999999998876555555566777777653 35566665555554
No 265
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.95 E-value=0.15 Score=52.28 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=17.9
Q ss_pred CCcEEEEccCCCchHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i 132 (643)
..++++.||+|+|||.++-..+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHH
Confidence 4678999999999998874443
No 266
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.15 Score=58.21 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=27.4
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
|..++..+.+.+..+.-+.-.|++||.|+|||.++...+-.
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~ 58 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARS 58 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 67777666655533222333689999999999998665533
No 267
>PRK06893 DNA replication initiation factor; Validated
Probab=95.93 E-value=0.037 Score=55.66 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=25.2
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 113 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
.++++||+|+|||-.+...+-....++..+.++.-
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 46899999999997766555555556667766543
No 268
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.059 Score=61.44 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=27.4
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~ 135 (643)
|..++..+.+.+..+.-+.-.|++|+.|+|||..+...+-..
T Consensus 21 Qe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 21 QEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred cHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 556555555544333334456999999999999886655444
No 269
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.91 E-value=0.098 Score=56.12 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=30.7
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 137 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~ 137 (643)
|.++...+...+..+.-+.-.|+.||+|+|||..+...+-..+.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 67777777665544333456899999999999988665554443
No 270
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.89 E-value=0.042 Score=52.91 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=37.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 114 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
.++.|++|+|||..++..+...+.+|..++++.. .+-..++.+++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~-e~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL-EESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC-CCCHHHHHHHHHH
Confidence 5899999999999998888888888999998865 3556666666654
No 271
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.88 E-value=0.02 Score=66.98 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC----CCeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~----g~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
.++|.|.+|+... ..+++|.|..|||||.+.+.-+...+.. ..++++++.|+..|.++.+++.+.++
T Consensus 1 ~Ln~~Q~~av~~~---------~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 1 KLNPQQQEAVEYV---------TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCCHHHHHHHhCC---------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 3789999996432 3578999999999999987777666643 25799999999999999999987665
Q ss_pred CC--CCceEEEEeC
Q 006476 165 KY--PDIKVGLLSR 176 (643)
Q Consensus 165 ~~--~~i~v~~l~g 176 (643)
.. .++.|..+++
T Consensus 72 ~~~~~~v~v~TfHs 85 (664)
T TIGR01074 72 KGEARGLTISTFHT 85 (664)
T ss_pred ccccCCeEEEeHHH
Confidence 32 2355655554
No 272
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.87 E-value=0.051 Score=50.46 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=30.2
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHH
Q 006476 114 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 153 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~ 153 (643)
++++|++|+|||..+...+......+..++++.....+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH
Confidence 5789999999999887666666667788888776544433
No 273
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.86 E-value=0.02 Score=67.44 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC----CCeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~----g~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
.++|.|.+|+... ...++|.|..|||||.+...-+...+.. ..++++|+-|+..|.++.+++.+.++
T Consensus 9 ~Ln~~Q~~av~~~---------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAAP---------LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhCC---------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 6999999997432 3568999999999999987666655542 35899999999999999999988665
Q ss_pred CC-CCceEEEEeC
Q 006476 165 KY-PDIKVGLLSR 176 (643)
Q Consensus 165 ~~-~~i~v~~l~g 176 (643)
.. .++.++.+|+
T Consensus 80 ~~~~~~~i~TfHs 92 (721)
T PRK11773 80 TSQGGMWVGTFHG 92 (721)
T ss_pred cCCCCCEEEcHHH
Confidence 32 2345555554
No 274
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.44 Score=51.38 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHH
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i 132 (643)
..-+..|.+.+..++.....+..|.++++-|+||+|||.+.-..+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~ 63 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVM 63 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHH
Confidence 355677877777677666567778889999999999998864443
No 275
>PTZ00293 thymidine kinase; Provisional
Probab=95.84 E-value=0.053 Score=53.50 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=33.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~ 149 (643)
|.=-++.||.+||||.-.+..+......+++++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 344688999999999989998888888899999999963
No 276
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.84 E-value=0.019 Score=67.71 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC----CCeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~----g~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
.|+|.|.+|+... ...++|.|..|||||.+...-+...+.. ..++|+++.|+..|.++.+++.+.++
T Consensus 4 ~Ln~~Q~~av~~~---------~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 4 GLNDKQREAVAAP---------PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred ccCHHHHHHHcCC---------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 6899999997432 3568999999999999987666665543 24899999999999999999988665
Q ss_pred CC-CCceEEEEeC
Q 006476 165 KY-PDIKVGLLSR 176 (643)
Q Consensus 165 ~~-~~i~v~~l~g 176 (643)
.. .++.++.+++
T Consensus 75 ~~~~~~~i~TfHs 87 (715)
T TIGR01075 75 TSARGMWIGTFHG 87 (715)
T ss_pred ccccCcEEEcHHH
Confidence 32 2345555444
No 277
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.83 E-value=0.077 Score=54.52 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=27.3
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~ 138 (643)
.+-.+|.+..++...++| =+||.||||||||... .++...+..
T Consensus 109 e~LglP~i~~~~~~~~~G-LILVTGpTGSGKSTTl-AamId~iN~ 151 (353)
T COG2805 109 EELGLPPIVRELAESPRG-LILVTGPTGSGKSTTL-AAMIDYINK 151 (353)
T ss_pred HHcCCCHHHHHHHhCCCc-eEEEeCCCCCcHHHHH-HHHHHHHhc
Confidence 334456666666555543 5889999999999774 334444443
No 278
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.79 E-value=0.036 Score=58.07 Aligned_cols=107 Identities=18% Similarity=0.197 Sum_probs=61.6
Q ss_pred cCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHH
Q 006476 107 ERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 186 (643)
Q Consensus 107 ~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~ 186 (643)
+..+-..+|++||.|+|||..+=+.+...-....+.+=+.-|.+-.+.+...|.+
T Consensus 158 eq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~------------------------- 212 (554)
T KOG2028|consen 158 EQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQ------------------------- 212 (554)
T ss_pred HcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHH-------------------------
Confidence 4455567899999999999887444333222222333344444333333222221
Q ss_pred HHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHhcCCCceEEEeccCCChHhHH
Q 006476 187 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 255 (643)
Q Consensus 187 ~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~~~~~~vl~lSATp~~~~~~ 255 (643)
-++. ....+.-.++.+||+|||.-.|...+.-.-.+-.+++.-||-.....+
T Consensus 213 ---aq~~--------------~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFq 264 (554)
T KOG2028|consen 213 ---AQNE--------------KSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQ 264 (554)
T ss_pred ---HHHH--------------HhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccc
Confidence 1100 011234457999999999876666665555677888889996544443
No 279
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.79 E-value=0.079 Score=54.21 Aligned_cols=71 Identities=20% Similarity=0.131 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHH
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 160 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~ 160 (643)
.....|..++..+......-+++.++++.||+|+|||..+...+...+..|..|+ .+++.+|+.++...+.
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~-f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 83 FQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVL-FITAPDLLSKLKAAFD 153 (254)
T ss_pred CCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEE-EEEHHHHHHHHHHHHh
Confidence 3444555655554432212236889999999999999887766666665566555 4677788887655543
No 280
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.78 E-value=0.052 Score=61.67 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=28.7
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHH
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~ 135 (643)
.|..++..+.+.+..+.-+.-.|++||.|+|||..|...+-..
T Consensus 20 GQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 20 GQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3566666555544333334558899999999999886655444
No 281
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.78 E-value=0.11 Score=54.54 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=16.9
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
.+..++++||+|+|||..+..
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ 49 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHI 49 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 356799999999999976643
No 282
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=95.77 E-value=0.065 Score=51.63 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=30.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccH
Q 006476 114 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~ 149 (643)
.++.||.+||||.-.+..+.+....|++++++-|..
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEEST
T ss_pred EEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 478999999999999988888878899999999963
No 283
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.73 E-value=0.25 Score=57.42 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=26.8
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~ 133 (643)
|..++..+.+.+..+.-+.-.|++||.|+|||.++-..+-
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 6666666655553333344468999999999999855443
No 284
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.71 E-value=0.42 Score=51.38 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=28.7
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
++..++++||+|+|||..+...+......+.+|.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4667889999999999998766666666677776665
No 285
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.70 E-value=0.09 Score=68.07 Aligned_cols=124 Identities=18% Similarity=0.132 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHH---HHHHHHHH-CCCeEEEEeccHHHHHHHHHHHHHH
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL---RAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSER 162 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l---~~i~~~~~-~g~~vlil~Pt~~La~Q~~~~~~~~ 162 (643)
.+.+++.|.+|+..++. ....-++|.|..|+|||.+.- .++..... .+.+++.++||-.-+.++. +.
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~-----~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~----~~ 1087 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIIS-----TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELK----SA 1087 (1960)
T ss_pred cCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHH----hc
Confidence 45899999999998875 223567889999999998752 33334333 4778999999987776542 21
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHhc--CCCc
Q 006476 163 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF--KISV 240 (643)
Q Consensus 163 ~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~--~~~~ 240 (643)
|+....+.++.. . ... ......+....++||||+=..+..+...+... ..+.
T Consensus 1088 -----g~~a~Ti~s~l~-------------~-~~~-------~~~~~~~~~~~v~ivDEasMv~~~~~~~l~~~~~~~~a 1141 (1960)
T TIGR02760 1088 -----GVQAQTLDSFLT-------------D-ISL-------YRNSGGDFRNTLFILDESSMVSNFQLTHATELVQKSGS 1141 (1960)
T ss_pred -----CCchHhHHHHhc-------------C-ccc-------ccccCCCCcccEEEEEccccccHHHHHHHHHhccCCCC
Confidence 333322222110 0 000 00001134457999999999887766655433 2344
Q ss_pred eEEEe
Q 006476 241 DVLTL 245 (643)
Q Consensus 241 ~vl~l 245 (643)
++|++
T Consensus 1142 k~vlv 1146 (1960)
T TIGR02760 1142 RAVSL 1146 (1960)
T ss_pred EEEEe
Confidence 55543
No 286
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.70 E-value=0.036 Score=58.26 Aligned_cols=64 Identities=23% Similarity=0.219 Sum_probs=43.6
Q ss_pred hcCCCCCC-HHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC---CCeEEEEeccHHHH
Q 006476 84 AQFPYEPT-PDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLA 152 (643)
Q Consensus 84 ~~~~~~~t-p~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~---g~~vlil~Pt~~La 152 (643)
+.+...|+ -.|.-|++.+++ +.-.=+.+.|+.|||||+.|+.+.+..... -.+++|.-|+..+.
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld-----~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG 289 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLD-----DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG 289 (436)
T ss_pred hhhccCcccHHHHHHHHHhcC-----CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc
Confidence 34444554 456667777664 223456789999999999999988877543 34777777775544
No 287
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.69 E-value=0.23 Score=52.02 Aligned_cols=55 Identities=25% Similarity=0.326 Sum_probs=44.5
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec--cHHHHHHHHHHHHHHh
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP--TIVLAKQHFDVVSERF 163 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P--t~~La~Q~~~~~~~~~ 163 (643)
.+|.-++++|..|+|||+..--.+.....+|++|++.+- -|+-|.++.+.+.++.
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~ 193 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERL 193 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHh
Confidence 347778999999999999987777777788998888763 3788888888888764
No 288
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=95.67 E-value=0.049 Score=64.30 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=38.4
Q ss_pred EecccccccccccC----------------------C----------CEEEEecCCCCCHHHHHH--HHhccCCCCCceE
Q 006476 357 ICTNIVESGLDIQN----------------------A----------NTIIVQDVQQFGLAQLYQ--LRGRVGRADKEAH 402 (643)
Q Consensus 357 VaT~i~~~GiDip~----------------------v----------~~VI~~d~p~~s~~~~~Q--r~GR~GR~g~~g~ 402 (643)
|+|+..+.|+|+|. + ++||.|++.. +.-.-+| |+||.|| ++.
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~-sfIR~IEvyra~r~~r---~~r 506 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDI-SFIRQLEVYKASRPLR---PLR 506 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCCh-HHHHHHHHHHccCCCC---CcE
Confidence 77888899999997 4 8999999765 4444445 6666555 478
Q ss_pred EEEEecCCCC
Q 006476 403 AYLFYPDKSL 412 (643)
Q Consensus 403 a~~l~~~~~~ 412 (643)
+|+++..+..
T Consensus 507 VyfL~y~~S~ 516 (814)
T TIGR00596 507 VYFLYYGGSI 516 (814)
T ss_pred EEEEEECCcH
Confidence 9998887643
No 289
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.65 E-value=0.2 Score=57.53 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=28.2
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~ 135 (643)
|..++..+.+.+..+.-+.-.|++||.|+|||..+...+-..
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 667666666555333333445999999999999986654433
No 290
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.65 E-value=0.058 Score=68.26 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=78.8
Q ss_pred HHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHH--HHHHHHHHH--CCCeEEEEeccHHHHHHHH
Q 006476 81 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA--LRAIFCVVS--AGKQAMVLAPTIVLAKQHF 156 (643)
Q Consensus 81 ~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~--l~~i~~~~~--~g~~vlil~Pt~~La~Q~~ 156 (643)
.+.+...+.+++.|.+|+..++. ....-.+|.|..|+|||.+. +..++..+. .+..++.++||---|.++.
T Consensus 959 ~~~~~~~~~Lt~~Q~~Av~~il~-----s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 959 RVPGELMEGLTSGQRAATRMILE-----STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred hHHHHhcCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHH
Confidence 34444557899999999999875 12357899999999999874 333333322 3567899999987776542
Q ss_pred HHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHhc
Q 006476 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 236 (643)
Q Consensus 157 ~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~ 236 (643)
+ . |+....++++....+. ...++ ......-+++||||+=.++......+.+.
T Consensus 1034 ----e-~----Gi~A~TI~s~L~~~~~-----~~~~~--------------~~~~~~~~llIVDEaSMv~~~~m~~Ll~~ 1085 (1747)
T PRK13709 1034 ----S-A----GVDAQTLASFLHDTQL-----QQRSG--------------ETPDFSNTLFLLDESSMVGNTDMARAYAL 1085 (1747)
T ss_pred ----h-c----CcchhhHHHHhccccc-----ccccc--------------cCCCCCCcEEEEEccccccHHHHHHHHHh
Confidence 2 1 4443333322110000 00000 01112347999999999887665554333
Q ss_pred -C-CCceEEEecc
Q 006476 237 -K-ISVDVLTLSA 247 (643)
Q Consensus 237 -~-~~~~vl~lSA 247 (643)
. .+.++|++-=
T Consensus 1086 ~~~~garvVLVGD 1098 (1747)
T PRK13709 1086 IAAGGGRAVSSGD 1098 (1747)
T ss_pred hhcCCCEEEEecc
Confidence 2 2566665443
No 291
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.62 E-value=0.12 Score=49.05 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=28.8
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~ 136 (643)
|.+++..+.+....+.-+.-.|+.||.|+||+..+...+...+
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHc
Confidence 6677766665554444456689999999999988766655443
No 292
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.61 E-value=0.082 Score=58.80 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=26.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHC--CCeEEEEeccHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQ 154 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~~~--g~~vlil~Pt~~La~Q 154 (643)
..++++||+|+|||..+-..+-..... +..++++. ...+..+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-SEKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-HHHHHHH
Confidence 458999999999997764443333333 45566553 3444443
No 293
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.60 E-value=0.0066 Score=58.25 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=55.2
Q ss_pred EEEccCCCchHHHHHHHHHHHHHCC-CeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcC
Q 006476 115 LICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 193 (643)
Q Consensus 115 li~a~TGsGKT~~~l~~i~~~~~~g-~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g 193 (643)
++.|+=|-|||.+.-+++...+..+ .+++|.+|+.+-++..++.+...+... +.+. ...........+..+
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~-------~~~~~~~~~~~~~~~ 72 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKAL-GYKE-------EKKKRIGQIIKLRFN 72 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC----------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcccc-cccc-------ccccccccccccccc
Confidence 5789999999988766554444444 489999999988887766554433222 1111 000000111112223
Q ss_pred CceEEEechHhhhcccccCccceEEeecccccchhHHHHHHhcCCCceEEEeccCC
Q 006476 194 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 249 (643)
Q Consensus 194 ~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~~~~~~vl~lSATp 249 (643)
...|-+-.|..+... -...+++|||||=.+.......+.. ....+.||.|.
T Consensus 73 ~~~i~f~~Pd~l~~~--~~~~DlliVDEAAaIp~p~L~~ll~---~~~~vv~stTi 123 (177)
T PF05127_consen 73 KQRIEFVAPDELLAE--KPQADLLIVDEAAAIPLPLLKQLLR---RFPRVVFSTTI 123 (177)
T ss_dssp CCC--B--HHHHCCT------SCEEECTGGGS-HHHHHHHHC---CSSEEEEEEEB
T ss_pred cceEEEECCHHHHhC--cCCCCEEEEechhcCCHHHHHHHHh---hCCEEEEEeec
Confidence 456667777766532 1245899999999988876666542 33455677775
No 294
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.56 E-value=0.12 Score=55.03 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH
Q 006476 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136 (643)
Q Consensus 90 ~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~ 136 (643)
..|||...+..+.+ .+.-+.-.|++||.|.|||..+...+-..+
T Consensus 4 ~yPWl~~~~~~~~~---~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 4 IYPWQQSLWQQLAG---RGRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred CCCCcHHHHHHHHH---CCCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 47999999998876 233355688999999999988766554443
No 295
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.56 E-value=0.18 Score=54.83 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=28.6
Q ss_pred CHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHH
Q 006476 91 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 91 tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i 132 (643)
+..|.+.+...+.+...+..+.++++.||+|+|||...-..+
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~ 76 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVF 76 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 455656666555443334556789999999999998764443
No 296
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.56 E-value=0.11 Score=59.78 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=27.6
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHH
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~ 133 (643)
.|..++..+.+.+..+.-+...|++||.|+|||.++...+-
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~ 60 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAK 60 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 36666666655443333344568999999999998765543
No 297
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.55 E-value=0.017 Score=65.72 Aligned_cols=127 Identities=18% Similarity=0.194 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC-CCeEEEEeccHHHHHHHH-HHHHHHhcCC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHF-DVVSERFSKY 166 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-g~~vlil~Pt~~La~Q~~-~~~~~~~~~~ 166 (643)
..+|+|.+-++.+-. +.-..+.++.++-+|||.+.+..+...+.. ...++++.||..+|..+. .++...+...
T Consensus 16 ~~~Py~~eimd~~~~-----~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 16 DRTPYLREIMDALSD-----PSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCChhHHHHHHhcCC-----cCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 889999998877633 335788999999999999777666554433 457999999999999987 4565555555
Q ss_pred CCceEEEEeCCCChHHHHHHHHHHhcCCceEEEec--hHhhhcccccCccceEEeeccccc
Q 006476 167 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT--HSLLGSRVVYNNLGLLVVDEEQRF 225 (643)
Q Consensus 167 ~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T--~~~L~~~~~~~~l~llViDEah~~ 225 (643)
|.++-.+..............+.+. |..-.+++. |..|. -..++++++||.+++
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~~~l~----s~~~r~~~~DEvD~~ 146 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSPSNLR----SRPARYLLLDEVDRY 146 (557)
T ss_pred HHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCCcccc----cCCcCEEEEechhhc
Confidence 5443222110000000001122222 322233333 33343 355789999999998
No 298
>PLN03025 replication factor C subunit; Provisional
Probab=95.54 E-value=0.11 Score=55.07 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=19.9
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCV 135 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~ 135 (643)
.+..+++++||+|+|||..+...+-..
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 334568999999999998875544433
No 299
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.53 E-value=0.32 Score=51.51 Aligned_cols=40 Identities=20% Similarity=0.167 Sum_probs=24.3
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
|..++..+.+.+ .++....+++.||+|+|||..+...+-.
T Consensus 20 ~~~~~~~L~~~~-~~~~~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 20 QDEVVERLSRAV-DSPNLPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred CHHHHHHHHHHH-hCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344444443322 2233337999999999999887554433
No 300
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.52 E-value=0.4 Score=53.73 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=60.9
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHC--CCeEEEEe--ccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLA--PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEE 185 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~--g~~vlil~--Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~ 185 (643)
.+..+.++|+||+|||..+...+...... ++++.++. +.+.-+.++..... ...++.+.... +..+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya----~iLgv~v~~a~---d~~~L~~ 421 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYG----RQLGIAVHEAD---SAESLLD 421 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhh----cccCceeEecC---cHHHHHH
Confidence 36778899999999999875544433333 34565543 23444433332222 21133332221 1111111
Q ss_pred HHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchh-----HHHHHHhcCCCceEEEeccCCChHhHH
Q 006476 186 HLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVK-----QKEKIASFKISVDVLTLSATPIPRTLY 255 (643)
Q Consensus 186 ~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~-----~~~~l~~~~~~~~vl~lSATp~~~~~~ 255 (643)
.+ . .+.++++||||.+=+.... +...+........++++++++....+.
T Consensus 422 aL------------------~---~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 422 LL------------------E---RLRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred HH------------------H---HhccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH
Confidence 11 1 2356789999998654221 112233333456688889987655544
No 301
>PRK12377 putative replication protein; Provisional
Probab=95.50 E-value=0.33 Score=49.40 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=41.9
Q ss_pred CHHHHHHHHHhH---HhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHH
Q 006476 91 TPDQKKAFLDVE---RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158 (643)
Q Consensus 91 tp~Q~~ai~~i~---~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~ 158 (643)
++.|..++..+. +.+. ....++++.|++|+|||-.+...+-.....|..|+++ +..+|..++...
T Consensus 80 ~~~~~~a~~~a~~~a~~~~--~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i-~~~~l~~~l~~~ 147 (248)
T PRK12377 80 NDGQRYALSQAKSIADELM--TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV-TVPDVMSRLHES 147 (248)
T ss_pred ChhHHHHHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE-EHHHHHHHHHHH
Confidence 466766665433 2332 1246799999999999987766655556667766554 555677765543
No 302
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.48 E-value=0.26 Score=56.38 Aligned_cols=42 Identities=24% Similarity=0.212 Sum_probs=26.3
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~ 135 (643)
|..++..+.+.+.++.-....|++||.|+|||.++...+-..
T Consensus 21 Qe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 21 QETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred CHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 444444444433232224567899999999999986655433
No 303
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.47 E-value=0.099 Score=59.24 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=25.5
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~ 133 (643)
|..++..+.+.+..+.-+.-.|++||.|+|||..+...+.
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5666655554443222233458999999999988755443
No 304
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.46 E-value=0.11 Score=59.37 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=25.3
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i 132 (643)
|...+..+.+.+..+.-+.-.|++||.|+|||.++-..+
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 21 QEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 555555555444333334457889999999998875544
No 305
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.45 E-value=0.15 Score=53.80 Aligned_cols=50 Identities=30% Similarity=0.380 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 138 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~ 138 (643)
.+.|+|..++..+.+.+..+.-+.-.|+.||.|+||+..+...+-..+..
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~ 53 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLAS 53 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCC
Confidence 57899999999988766444445568999999999999876655444433
No 306
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=95.45 E-value=0.098 Score=54.44 Aligned_cols=85 Identities=16% Similarity=0.429 Sum_probs=69.2
Q ss_pred HHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCcc
Q 006476 135 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNL 214 (643)
Q Consensus 135 ~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l 214 (643)
....|..+++.+|+.+.++|.+..+++.+ |..+++.+++ ....+.+..+.+++|+.+|+|+|. .|-+.+.+.++
T Consensus 301 q~~~~~P~liF~p~I~~~eq~a~~lk~~~---~~~~i~~Vhs--~d~~R~EkV~~fR~G~~~lLiTTT-ILERGVTfp~v 374 (441)
T COG4098 301 QRKTGRPVLIFFPEIETMEQVAAALKKKL---PKETIASVHS--EDQHRKEKVEAFRDGKITLLITTT-ILERGVTFPNV 374 (441)
T ss_pred HHhcCCcEEEEecchHHHHHHHHHHHhhC---Cccceeeeec--cCccHHHHHHHHHcCceEEEEEee-hhhcccccccc
Confidence 33557899999999999999999987654 4567777777 344566778889999999999994 55667889999
Q ss_pred ceEEeeccccc
Q 006476 215 GLLVVDEEQRF 225 (643)
Q Consensus 215 ~llViDEah~~ 225 (643)
++.|++-.|+.
T Consensus 375 dV~Vlgaeh~v 385 (441)
T COG4098 375 DVFVLGAEHRV 385 (441)
T ss_pred eEEEecCCccc
Confidence 99999999975
No 307
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.40 E-value=0.11 Score=59.88 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=29.0
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
.|..++..+.+.+..+.-+.-.|++||.|+|||..+...+-.
T Consensus 20 GQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~ 61 (620)
T PRK14954 20 AQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKA 61 (620)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHH
Confidence 367777766665533333445889999999999998655443
No 308
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.37 E-value=0.13 Score=58.99 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=26.1
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~ 133 (643)
|..++..+.+.+..+.-+.-.|++||.|+|||.++...+-
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5555555555443333344568999999999998865443
No 309
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.36 E-value=0.58 Score=48.26 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=63.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec--cH-HHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP--TI-VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 187 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P--t~-~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~ 187 (643)
+..+.++|++|+|||..+...+......+..+.++.- .+ ..+.|+..... .+ ++.+.... +.......+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~-~~----~~~~~~~~---~~~~l~~~l 146 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVK-TI----GFEVIAVR---DEAAMTRAL 146 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhh-hc----CceEEecC---CHHHHHHHH
Confidence 4678999999999999876555544455666666543 22 45555543222 11 33433221 222212222
Q ss_pred HHHhcCCceEEEechHhhhcccccCccceEEeecccccc--hhHHHH----HHhcCCCceEEEeccCCChHhHHHH
Q 006476 188 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFG--VKQKEK----IASFKISVDVLTLSATPIPRTLYLA 257 (643)
Q Consensus 188 ~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g--~~~~~~----l~~~~~~~~vl~lSATp~~~~~~~~ 257 (643)
..+. ...++++||||-+=+.. ....+. +....++.-++.+|||.........
T Consensus 147 ~~l~------------------~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 147 TYFK------------------EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred HHHH------------------hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH
Confidence 2111 12356788888885542 222222 2223344457789999766554333
No 310
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.36 E-value=0.1 Score=57.12 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=30.8
Q ss_pred CHHHHHHHHHhHHhhccCC--CCCcEEEEccCCCchHHHHHHHHHHHHHC--CCeEEEEe
Q 006476 91 TPDQKKAFLDVERDLTERE--TPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLA 146 (643)
Q Consensus 91 tp~Q~~ai~~i~~~~~~~~--~~~d~li~a~TGsGKT~~~l~~i~~~~~~--g~~vlil~ 146 (643)
.+....|...+.+-. +.+ ....+++.|++|+|||..+...+-..... +..++++.
T Consensus 115 g~~n~~a~~~~~~~~-~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 115 GKSNRLAHAAALAVA-ENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCcHHHHHHHHHHHH-hCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 344555555444322 221 23457899999999997764333333333 45666664
No 311
>PRK05642 DNA replication initiation factor; Validated
Probab=95.35 E-value=0.11 Score=52.58 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=23.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
..++++|++|+|||-.+...+......+.+++++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH
Confidence 568899999999997643333333345667766553
No 312
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.35 E-value=0.12 Score=58.89 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=27.9
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
|..++..+.+.+..+.-+.-.|++||.|+|||.++...+-.
T Consensus 21 qe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 21 QDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 66666666655544333445789999999999987554433
No 313
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.33 E-value=0.15 Score=51.27 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=33.4
Q ss_pred HHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHH
Q 006476 95 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 154 (643)
Q Consensus 95 ~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q 154 (643)
.+++-.+..+.. ....-..++|+.|||||.+.= ++......+..++++.|-..+..+
T Consensus 37 ~e~l~~l~~~i~--d~qg~~~vtGevGsGKTv~~R-al~~s~~~d~~~~v~i~~~~~s~~ 93 (269)
T COG3267 37 NEALLMLHAAIA--DGQGILAVTGEVGSGKTVLRR-ALLASLNEDQVAVVVIDKPTLSDA 93 (269)
T ss_pred hHHHHHHHHHHh--cCCceEEEEecCCCchhHHHH-HHHHhcCCCceEEEEecCcchhHH
Confidence 445555554432 333467899999999998764 444444445555545554444443
No 314
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=95.32 E-value=0.16 Score=59.20 Aligned_cols=87 Identities=23% Similarity=0.333 Sum_probs=74.1
Q ss_pred HHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCcc
Q 006476 135 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNL 214 (643)
Q Consensus 135 ~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l 214 (643)
....|.+++|.++|+.-+..+.+.+.+. ++++..+++..+..++...+..++.|.++|+||| +.+...+.+.++
T Consensus 442 ~~~~g~~viIf~~t~~~ae~L~~~L~~~-----gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t-~~L~rGfdlp~v 515 (652)
T PRK05298 442 RVAKGERVLVTTLTKRMAEDLTDYLKEL-----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-NLLREGLDIPEV 515 (652)
T ss_pred HHhCCCEEEEEeCCHHHHHHHHHHHhhc-----ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEe-CHHhCCccccCC
Confidence 3456889999999999888887777653 7899999998888899999999999999999999 566677888999
Q ss_pred ceEEeecccccch
Q 006476 215 GLLVVDEEQRFGV 227 (643)
Q Consensus 215 ~llViDEah~~g~ 227 (643)
+++|+=|++.||+
T Consensus 516 ~lVii~d~eifG~ 528 (652)
T PRK05298 516 SLVAILDADKEGF 528 (652)
T ss_pred cEEEEeCCccccc
Confidence 9999888888776
No 315
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.30 E-value=0.13 Score=56.59 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=34.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEe--ccHHHHHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLA--PTIVLAKQHFDVVSE 161 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~--Pt~~La~Q~~~~~~~ 161 (643)
+.-++++|++|+|||+++.-.+.... ..|.+++++. +.|..|.++.+.+.+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~ 152 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQ 152 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHH
Confidence 55688999999999999876665543 4677776664 234445554444444
No 316
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.28 E-value=0.041 Score=65.02 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC----CeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG----KQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g----~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
.|+|.|.+|+... ...++|.|..|||||.+...-+...+..+ .++|+++-|+..|..+.+++.+.++
T Consensus 4 ~Ln~~Q~~av~~~---------~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 4 HLNPEQREAVKTT---------EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred ccCHHHHHHHhCC---------CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 6899999997532 35689999999999999877766666532 4899999999999999999987655
Q ss_pred CC-CCceEEEEeC
Q 006476 165 KY-PDIKVGLLSR 176 (643)
Q Consensus 165 ~~-~~i~v~~l~g 176 (643)
.. .++.++.+++
T Consensus 75 ~~~~~~~i~TFHs 87 (726)
T TIGR01073 75 PVAEDIWISTFHS 87 (726)
T ss_pred cccCCcEEEcHHH
Confidence 32 2355655544
No 317
>PRK10867 signal recognition particle protein; Provisional
Probab=95.23 E-value=0.12 Score=56.69 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=34.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHC-CCeEEEEe--ccHHHHHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLA--PTIVLAKQHFDVVSE 161 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~-g~~vlil~--Pt~~La~Q~~~~~~~ 161 (643)
+.-++++|++|+|||+++...+...... |++|+++. +.|.-+......+.+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~ 153 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGE 153 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHh
Confidence 5667899999999999987666655555 77777664 345555443444433
No 318
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.22 E-value=0.12 Score=56.17 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=18.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
+.-.|+.||.|+|||..+...+-.
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 456899999999999887655443
No 319
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.18 Score=56.55 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=26.9
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHH
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~ 133 (643)
.|..++..+.+.+..+.-+.-.|++||.|+|||.++...+.
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 46777766666553322233357899999999988755443
No 320
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.17 E-value=0.24 Score=46.83 Aligned_cols=130 Identities=14% Similarity=0.176 Sum_probs=68.3
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC--hHHHHHHHHHHh
Q 006476 114 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQS--KAEKEEHLDMIK 191 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~--~~~~~~~~~~l~ 191 (643)
+.|-.++|.|||.+++-.+++++..|.+|+++.=.+.-. .+.+.. .+..++++.+........ ..+..+......
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~--~~gE~~-~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~ 81 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW--KYGELK-ALERLPNIEIHRMGRGFFWTTENDEEDIAAAA 81 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC--ccCHHH-HHHhCCCcEEEECCCCCccCCCChHHHHHHHH
Confidence 456677799999999999999999999999965443311 111111 133334455443322110 001111111111
Q ss_pred cCCceEEEechHhhhcccccCccceEEeeccccc---ch----hHHHHHHhcCCCceEEEeccCCChHhH
Q 006476 192 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRF---GV----KQKEKIASFKISVDVLTLSATPIPRTL 254 (643)
Q Consensus 192 ~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~---g~----~~~~~l~~~~~~~~vl~lSATp~~~~~ 254 (643)
.+ -......+...++++||+||.=-. |. ...+.++..+.+..+|+.+-.+++...
T Consensus 82 ~~--------~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~ 143 (159)
T cd00561 82 EG--------WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELI 143 (159)
T ss_pred HH--------HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHH
Confidence 11 011112233467899999999742 32 234556666666667655555444433
No 321
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.17 E-value=0.35 Score=50.38 Aligned_cols=21 Identities=43% Similarity=0.594 Sum_probs=17.3
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~ 131 (643)
+.++++.||+|+|||.++-..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~i 78 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRM 78 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHH
Confidence 357999999999999987443
No 322
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.13 E-value=0.1 Score=55.27 Aligned_cols=48 Identities=10% Similarity=0.141 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH
Q 006476 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 137 (643)
Q Consensus 90 ~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~ 137 (643)
..|||..++..+.+.+..+.-+.-.|+.||.|.||+..+...+-..+.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC 50 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC 50 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC
Confidence 468999999888876644444556789999999999988665544443
No 323
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.12 E-value=0.31 Score=54.21 Aligned_cols=146 Identities=18% Similarity=0.151 Sum_probs=87.8
Q ss_pred hcCCCCCCHHHHHHHHHhHHhhccCCC----CCcEEEEccCCCchHHHHH-HHHHHH---HHCCCeEEEEeccHHHHHHH
Q 006476 84 AQFPYEPTPDQKKAFLDVERDLTERET----PMDRLICGDVGFGKTEVAL-RAIFCV---VSAGKQAMVLAPTIVLAKQH 155 (643)
Q Consensus 84 ~~~~~~~tp~Q~~ai~~i~~~~~~~~~----~~d~li~a~TGsGKT~~~l-~~i~~~---~~~g~~vlil~Pt~~La~Q~ 155 (643)
..+|+.+-|+|.-.+-.+.-.. .... -...+|..|-|-|||..+. +..... ...|....|++|+.+-+.+.
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~-~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~ 134 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFY-DKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANS 134 (546)
T ss_pred CCCccccchHHHHHHHHHhcee-ecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHh
Confidence 6778999999999998887322 1122 2356889999999998753 222221 24578999999999999998
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhh----------cccccCccceEEeeccccc
Q 006476 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG----------SRVVYNNLGLLVVDEEQRF 225 (643)
Q Consensus 156 ~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~----------~~~~~~~l~llViDEah~~ 225 (643)
+...+......+++. .+.+-+.+-...++.... +...-.+..+.|+||.|.|
T Consensus 135 F~~ar~mv~~~~~l~------------------~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f 196 (546)
T COG4626 135 FNPARDMVKRDDDLR------------------DLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLF 196 (546)
T ss_pred hHHHHHHHHhCcchh------------------hhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhh
Confidence 887766443332111 001111122222322211 1122346689999999999
Q ss_pred chhHHHHHHh------cCCCceEEEeccCC
Q 006476 226 GVKQKEKIAS------FKISVDVLTLSATP 249 (643)
Q Consensus 226 g~~~~~~l~~------~~~~~~vl~lSATp 249 (643)
+-.. +.+.. .+++.+++..|--.
T Consensus 197 ~~~~-~~~~~~~~g~~ar~~~l~~~ITT~g 225 (546)
T COG4626 197 GKQE-DMYSEAKGGLGARPEGLVVYITTSG 225 (546)
T ss_pred cCHH-HHHHHHHhhhccCcCceEEEEecCC
Confidence 8753 22222 24677777766544
No 324
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.12 E-value=0.25 Score=53.81 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=33.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHH-HHCCCeEEEEe--ccHHHHHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLA--PTIVLAKQHFDVVSE 161 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~-~~~g~~vlil~--Pt~~La~Q~~~~~~~ 161 (643)
+.-++++||+|+|||.++...+... ...|.+|.++. +.|..+..+..+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe 276 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYAD 276 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHH
Confidence 3447899999999999987666543 45676666554 335666655555544
No 325
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.99 E-value=0.046 Score=65.22 Aligned_cols=134 Identities=17% Similarity=0.249 Sum_probs=85.1
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHH------------H------CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCce
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVV------------S------AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIK 170 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~------------~------~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~ 170 (643)
..+.+.+..-..|.|||..-+...+... . .-+.+||++|. ++..||+.++...... +++
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~--~lK 448 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS--LLK 448 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc--cce
Confidence 4467778888899999988654433211 1 13568999997 5678999999865443 468
Q ss_pred EEEEeCCCChH--HHHHHHHHHhcCCceEEEechHhhhcccccC-----------------------ccc--eEEeeccc
Q 006476 171 VGLLSRFQSKA--EKEEHLDMIKHGHLNIIVGTHSLLGSRVVYN-----------------------NLG--LLVVDEEQ 223 (643)
Q Consensus 171 v~~l~g~~~~~--~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~-----------------------~l~--llViDEah 223 (643)
|..+.|-.... +..+ + -++|||++|+..|...+.+. .+. -|++||||
T Consensus 449 v~~Y~Girk~~~~~~~e-l-----~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQ 522 (1394)
T KOG0298|consen 449 VLLYFGIRKTFWLSPFE-L-----LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQ 522 (1394)
T ss_pred EEEEechhhhcccCchh-h-----hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHH
Confidence 87777733211 1111 1 24899999998875322111 111 28999999
Q ss_pred ccchhH---HHHHHhcCCCceEEEeccCCChH
Q 006476 224 RFGVKQ---KEKIASFKISVDVLTLSATPIPR 252 (643)
Q Consensus 224 ~~g~~~---~~~l~~~~~~~~vl~lSATp~~~ 252 (643)
...... .+.+.++ +....-+.|+||+.+
T Consensus 523 MvesssS~~a~M~~rL-~~in~W~VTGTPiq~ 553 (1394)
T KOG0298|consen 523 MVESSSSAAAEMVRRL-HAINRWCVTGTPIQK 553 (1394)
T ss_pred hhcchHHHHHHHHHHh-hhhceeeecCCchhh
Confidence 874321 2333333 567788999999877
No 326
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.95 E-value=0.16 Score=58.27 Aligned_cols=78 Identities=19% Similarity=0.326 Sum_probs=67.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.|+|+..+.++++.+.+. ++++..+++..+..++...++.+++|+++|+|+|. .+..-+++.++++|
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-v~arGIDip~V~~V 329 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-VAARGLHIDGVKYV 329 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-hhhcCCCccCCCEE
Confidence 4678999999999999999888763 68999999999999999999999999999999995 45556778888888
Q ss_pred Eeec
Q 006476 218 VVDE 221 (643)
Q Consensus 218 ViDE 221 (643)
|.-+
T Consensus 330 Inyd 333 (572)
T PRK04537 330 YNYD 333 (572)
T ss_pred EEcC
Confidence 7543
No 327
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.94 E-value=0.19 Score=57.97 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=26.9
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~ 133 (643)
|..+...+.+.+..+.-+.-.|++||.|+|||.++...+.
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHH
Confidence 6666666665553333344579999999999997654443
No 328
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=94.93 E-value=0.17 Score=54.80 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=24.8
Q ss_pred HHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHH
Q 006476 95 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 95 ~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~ 130 (643)
.++++.+.. -.+.+..+++.|+||+||++.|-.
T Consensus 88 ~~~~eqik~---~ap~~~~vLi~GetGtGKel~A~~ 120 (403)
T COG1221 88 QELREQIKA---YAPSGLPVLIIGETGTGKELFARL 120 (403)
T ss_pred HHHHHHHHh---hCCCCCcEEEecCCCccHHHHHHH
Confidence 445555555 246688999999999999999743
No 329
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.92 E-value=0.014 Score=66.09 Aligned_cols=155 Identities=20% Similarity=0.169 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHhHH---hhccCCCCCcEEEEccCCCchHHHHHHHHHHH-HHCCCeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 89 EPTPDQKKAFLDVER---DLTERETPMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~---~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~-~~~g~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
.++..|.+|+--... .+.-+...-..||-...|.||-....-.|+.. +...+++|++.-+..|-...-+.+.+ .+
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~D-ig 342 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRD-IG 342 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhh-cC
Confidence 678899999854432 11112222345555455555544432233443 44567999999988888877777766 44
Q ss_pred CCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc---------------cccc--Cc-cceEEeeccccc-
Q 006476 165 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS---------------RVVY--NN-LGLLVVDEEQRF- 225 (643)
Q Consensus 165 ~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~---------------~~~~--~~-l~llViDEah~~- 225 (643)
. +++.|..++.+.-.+-..+.-...+.| |+++|+..|.. .+.| .+ =++||+||||+.
T Consensus 343 A-~~I~V~alnK~KYakIss~en~n~krG---ViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAK 418 (1300)
T KOG1513|consen 343 A-TGIAVHALNKFKYAKISSKENTNTKRG---VIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAK 418 (1300)
T ss_pred C-CCccceehhhcccccccccccCCccce---eEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhc
Confidence 3 367777776544221111111122334 89999876642 1111 12 278999999973
Q ss_pred -------------chhHHHHHHhcCCCceEEEeccCC
Q 006476 226 -------------GVKQKEKIASFKISVDVLTLSATP 249 (643)
Q Consensus 226 -------------g~~~~~~l~~~~~~~~vl~lSATp 249 (643)
|-... .|.+.-++.+++.-|||-
T Consensus 419 NL~p~~~~k~TKtG~tVL-dLQk~LP~ARVVYASATG 454 (1300)
T KOG1513|consen 419 NLVPTAGAKSTKTGKTVL-DLQKKLPNARVVYASATG 454 (1300)
T ss_pred ccccccCCCcCcccHhHH-HHHHhCCCceEEEeeccC
Confidence 11112 244445899999999995
No 330
>PRK08116 hypothetical protein; Validated
Probab=94.91 E-value=0.96 Score=46.64 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHhH---Hhhcc-CCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHH
Q 006476 90 PTPDQKKAFLDVE---RDLTE-RETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157 (643)
Q Consensus 90 ~tp~Q~~ai~~i~---~~~~~-~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~ 157 (643)
.++.|..|+..+. +.+.+ ...+..+++.|++|+|||..+...+-.....+..++++ +...+..++..
T Consensus 89 ~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~-~~~~ll~~i~~ 159 (268)
T PRK08116 89 FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV-NFPQLLNRIKS 159 (268)
T ss_pred CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHH
Confidence 5777777766544 22211 11233499999999999988765544445556666555 45566665543
No 331
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.89 E-value=0.24 Score=57.44 Aligned_cols=145 Identities=19% Similarity=0.146 Sum_probs=87.8
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC--CeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g--~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
...|.+|.+++..+..-+. .+..-+++.|+=|=|||.+.-+++......+ .+++|.+|+.+-++..++-..+.+..
T Consensus 210 l~~T~dQ~~~l~~~~~l~~--~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~ 287 (758)
T COG1444 210 LCLTEDQAEALEILERLLD--APKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEF 287 (758)
T ss_pred hhcChhHHHHHHHHHHHHc--CCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHH
Confidence 3678899998887766442 2234788999999999999765554333333 48999999998888877665554433
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHhcCCCceEEEe
Q 006476 166 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTL 245 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~~~~~~vl~l 245 (643)
. |.+-.+..... . ...........|=+-+|.... ..-+++|||||=-++......+.. ..+.++|
T Consensus 288 l-g~~~~v~~d~~--g----~~~~~~~~~~~i~y~~P~~a~-----~~~DllvVDEAAaIplplL~~l~~---~~~rv~~ 352 (758)
T COG1444 288 L-GYKRKVAPDAL--G----EIREVSGDGFRIEYVPPDDAQ-----EEADLLVVDEAAAIPLPLLHKLLR---RFPRVLF 352 (758)
T ss_pred h-CCccccccccc--c----ceeeecCCceeEEeeCcchhc-----ccCCEEEEehhhcCChHHHHHHHh---hcCceEE
Confidence 2 22211111100 0 000011112335555555443 116899999999888876555543 3356678
Q ss_pred ccCC
Q 006476 246 SATP 249 (643)
Q Consensus 246 SATp 249 (643)
|.|.
T Consensus 353 sTTI 356 (758)
T COG1444 353 STTI 356 (758)
T ss_pred Eeee
Confidence 8885
No 332
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.87 E-value=0.61 Score=49.87 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=26.5
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHH
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i 132 (643)
.|.+++..+.+.+..+..+...|++||.|+|||..+...+
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la 57 (355)
T TIGR02397 18 GQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFA 57 (355)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3566666655544333345567999999999998774443
No 333
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.86 E-value=0.44 Score=51.39 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=32.1
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 137 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~ 137 (643)
.|.++...+.+.+..+.-+.-.|+.||.|+||+..+...+-..+.
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhC
Confidence 477777777665544333556899999999999998766555543
No 334
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.82 E-value=0.2 Score=51.25 Aligned_cols=73 Identities=21% Similarity=0.335 Sum_probs=41.4
Q ss_pred cCccceEEeecccccchhHHHHHHhcCC--CceEE------------------EeccCCChHhHHHHHhcCCCcceeeCC
Q 006476 211 YNNLGLLVVDEEQRFGVKQKEKIASFKI--SVDVL------------------TLSATPIPRTLYLALTGFRDASLISTP 270 (643)
Q Consensus 211 ~~~l~llViDEah~~g~~~~~~l~~~~~--~~~vl------------------~lSATp~~~~~~~~~~~~~~~~~i~~~ 270 (643)
+..-+++.|||.|+++....+.+=..-. ..+++ +.-||- ....++.|
T Consensus 101 Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT-------------r~G~lt~P 167 (332)
T COG2255 101 LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT-------------RAGMLTNP 167 (332)
T ss_pred CCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc-------------ccccccch
Confidence 4555789999999987655444321111 11222 223331 11223444
Q ss_pred CCCccceeEEEccCCHHHHHHHHHHH
Q 006476 271 PPERLPIKTHLSAFSKEKVISAIKYE 296 (643)
Q Consensus 271 ~~~~~~v~~~~~~~~~~~~~~~i~~~ 296 (643)
-.+|+.+...+..++.+.+...+.+.
T Consensus 168 LrdRFGi~~rlefY~~~eL~~Iv~r~ 193 (332)
T COG2255 168 LRDRFGIIQRLEFYTVEELEEIVKRS 193 (332)
T ss_pred hHHhcCCeeeeecCCHHHHHHHHHHH
Confidence 45677788888888887777766653
No 335
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.82 E-value=0.094 Score=53.83 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=32.6
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
++.-.+|+|++|+|||..++..+...+.+|..++++.-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 46678999999999999999888887778889998873
No 336
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.77 E-value=0.27 Score=56.73 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=28.1
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHH
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~ 135 (643)
.|..+...+.+.+..+.-....|++||.|+|||.++...+-..
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 4666666555544332224567999999999999886554443
No 337
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.77 E-value=0.15 Score=49.48 Aligned_cols=132 Identities=15% Similarity=0.135 Sum_probs=71.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC--hHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQS--KAEKEEHLD 188 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~--~~~~~~~~~ 188 (643)
...+++.+++|-|||.+++-.+++++..|.+|+++.=.+--.. +.+.. .+...+++.......+.. ..+..+...
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~--~GE~~-~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWS--TGERN-LLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCc--cCHHH-HHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 4679999999999999999999999999999999975543211 11111 122223344433222100 001111111
Q ss_pred HHhcCCceEEEechHhhhcccccCccceEEeecccc---cch----hHHHHHHhcCCCceEEEeccCCChHhH
Q 006476 189 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQR---FGV----KQKEKIASFKISVDVLTLSATPIPRTL 254 (643)
Q Consensus 189 ~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~---~g~----~~~~~l~~~~~~~~vl~lSATp~~~~~ 254 (643)
....+ -......+.-..+++||+||.=. +|. ...+.|+..+.+..+| +|..-.|..+
T Consensus 99 ~~~~~--------~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evV-lTGR~~p~~L 162 (191)
T PRK05986 99 AAREG--------WEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVV-ITGRGAPREL 162 (191)
T ss_pred HHHHH--------HHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEE-EECCCCCHHH
Confidence 11111 01111223346789999999874 232 2234455555555555 6666555543
No 338
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.76 E-value=0.09 Score=54.13 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=31.6
Q ss_pred HHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH
Q 006476 92 PDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 92 p~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
..|..++..+++.+.. ...-+.|..||.|+|||-+++..+..
T Consensus 39 ~gQe~vV~~L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~ 80 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLR-RILPHYLFYGPPGTGKTSTALAFARA 80 (346)
T ss_pred cchHHHHHHHHHHHhh-cCCceEEeeCCCCCcHhHHHHHHHHH
Confidence 4588888888776643 44557899999999999887665443
No 339
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.75 E-value=0.27 Score=52.23 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=18.8
Q ss_pred CCCCcEEEEccCCCchHHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i 132 (643)
..+..+++.||+|+|||..+...+
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia 72 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIA 72 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHH
Confidence 335689999999999998875443
No 340
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.73 E-value=0.23 Score=52.34 Aligned_cols=20 Identities=40% Similarity=0.316 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
+.-.+++||+|+|||..+-.
T Consensus 43 ~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHH
Confidence 34445589999999987543
No 341
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.70 E-value=0.18 Score=54.24 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHH
Q 006476 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 90 ~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~ 130 (643)
=+..|.+.+...+.+...+..+.+++|.||+|+|||.++-.
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~ 59 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKY 59 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHH
Confidence 35566666666655433345567899999999999977533
No 342
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.69 E-value=0.31 Score=48.70 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=24.4
Q ss_pred cCccceEEeecccccchhH--HHH----HHhc-CCCceEEEeccCCCh
Q 006476 211 YNNLGLLVVDEEQRFGVKQ--KEK----IASF-KISVDVLTLSATPIP 251 (643)
Q Consensus 211 ~~~l~llViDEah~~g~~~--~~~----l~~~-~~~~~vl~lSATp~~ 251 (643)
+.+.++|+||..|.+..+. .+. +..+ ..+.++|+.|..++.
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPS 142 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCc
Confidence 4678999999999985533 111 2222 245567666656543
No 343
>CHL00181 cbbX CbbX; Provisional
Probab=94.69 E-value=0.68 Score=48.25 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=18.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIF 133 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~ 133 (643)
+.++++.||+|+|||.++-..+-
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999855443
No 344
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=94.65 E-value=0.4 Score=42.69 Aligned_cols=80 Identities=20% Similarity=0.381 Sum_probs=65.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.+++..-+.++++.+.+ ++..+..+++..+..++......+.++...|+++|.. +...+++.+.+.+
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~-~~~G~d~~~~~~v 100 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK-----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV-IARGIDLPNVSVV 100 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh-----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh-hhcCcChhhCCEE
Confidence 577899999999999998888875 2578999999988888888999999999899999964 5555667777777
Q ss_pred Eeeccc
Q 006476 218 VVDEEQ 223 (643)
Q Consensus 218 ViDEah 223 (643)
|+....
T Consensus 101 i~~~~~ 106 (131)
T cd00079 101 INYDLP 106 (131)
T ss_pred EEeCCC
Confidence 777664
No 345
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.64 E-value=0.21 Score=54.97 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=77.1
Q ss_pred HHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCcc
Q 006476 135 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNL 214 (643)
Q Consensus 135 ~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l 214 (643)
.+..+-+++|.+-|+-+|.+..+-+.+. |+++.++++..+.-++.++++.++.|.+|++||- .+|...+.+..+
T Consensus 442 r~~~~eRvLVTtLTKkmAEdLT~Yl~e~-----gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-NLLREGLDiPEV 515 (663)
T COG0556 442 RVAKNERVLVTTLTKKMAEDLTEYLKEL-----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-NLLREGLDLPEV 515 (663)
T ss_pred HHhcCCeEEEEeehHHHHHHHHHHHHhc-----CceEEeeeccchHHHHHHHHHHHhcCCccEEEee-hhhhccCCCcce
Confidence 3556889999999999999887777764 8999999999999999999999999999999995 678888889999
Q ss_pred ceEEeecccccch
Q 006476 215 GLLVVDEEQRFGV 227 (643)
Q Consensus 215 ~llViDEah~~g~ 227 (643)
++|.|=.||.-|+
T Consensus 516 sLVAIlDADKeGF 528 (663)
T COG0556 516 SLVAILDADKEGF 528 (663)
T ss_pred eEEEEeecCcccc
Confidence 9999999998776
No 346
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.63 E-value=0.26 Score=49.61 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=37.4
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 160 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~ 160 (643)
.+.-.++.|++|+|||..++..+...+.+|..+++++.. +-..+..+.+.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e-~~~~~~~~~~~ 72 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ-LTTTEFIKQMM 72 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHH
Confidence 356789999999999999888777777788889888843 33345444443
No 347
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.62 E-value=0.094 Score=65.46 Aligned_cols=68 Identities=24% Similarity=0.280 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC---CeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG---KQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g---~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
.+|+.|.+||.. ++.+++|.|..|||||.+.+.-+...+..+ .++++++=|+..|.++.+++.+.+..
T Consensus 1 ~~t~~Q~~ai~~---------~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~ 71 (1232)
T TIGR02785 1 QWTDEQWQAIYT---------RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQK 71 (1232)
T ss_pred CCCHHHHHHHhC---------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHH
Confidence 369999999852 257899999999999999877666666544 36999999999999998888876543
No 348
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.61 E-value=0.22 Score=55.78 Aligned_cols=79 Identities=11% Similarity=0.198 Sum_probs=67.3
Q ss_pred HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccce
Q 006476 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216 (643)
Q Consensus 137 ~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~l 216 (643)
..++.++|.++|+.-+.++++.+.+. ++++..++++.+..++....+...+|+++|+|+|. .+...+++.++++
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~~~-----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~-~~~~GID~p~V~~ 297 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQNL-----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV-AFGMGINKPDVRF 297 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHHhc-----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec-hhhccCCcccceE
Confidence 45778899999999999999888763 78999999999999999999999999999999996 4555677788888
Q ss_pred EEeec
Q 006476 217 LVVDE 221 (643)
Q Consensus 217 lViDE 221 (643)
||.-.
T Consensus 298 VI~~~ 302 (470)
T TIGR00614 298 VIHYS 302 (470)
T ss_pred EEEeC
Confidence 88543
No 349
>PTZ00110 helicase; Provisional
Probab=94.61 E-value=0.21 Score=56.99 Aligned_cols=85 Identities=12% Similarity=0.128 Sum_probs=69.7
Q ss_pred HHHHHHHHH-CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc
Q 006476 129 LRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS 207 (643)
Q Consensus 129 l~~i~~~~~-~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~ 207 (643)
+..++..+. .+.++||.|+|+.-|..+++.+... ++.+..++|..+..++...++.+++|+.+|+|+|. .+..
T Consensus 366 L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~-----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-v~~r 439 (545)
T PTZ00110 366 LKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD-----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-VASR 439 (545)
T ss_pred HHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc-----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-hhhc
Confidence 344444443 6789999999999999988888642 67889999999999999999999999999999995 4556
Q ss_pred ccccCccceEEe
Q 006476 208 RVVYNNLGLLVV 219 (643)
Q Consensus 208 ~~~~~~l~llVi 219 (643)
-+++.++++||.
T Consensus 440 GIDi~~v~~VI~ 451 (545)
T PTZ00110 440 GLDVKDVKYVIN 451 (545)
T ss_pred CCCcccCCEEEE
Confidence 677888888875
No 350
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.60 E-value=0.095 Score=50.57 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=31.9
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 154 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q 154 (643)
.++.++++.|++|+|||..+...+...+..|..|+++. ...|...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~-~~~L~~~ 89 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT-ASDLLDE 89 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-HHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee-cCceecc
Confidence 34789999999999999998777777778888887754 4455554
No 351
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.60 E-value=0.24 Score=50.87 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=36.7
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHC-CCeEEEEeccHHHHHHHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHFDVVSER 162 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~-g~~vlil~Pt~~La~Q~~~~~~~~ 162 (643)
.+.-+++.|++|+|||..+...+...... |..|+++.-- .-..++..++...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E-~~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE-EPVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc-cCHHHHHHHHHHH
Confidence 46678999999999999887777766665 7888888642 2344555555443
No 352
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.56 E-value=0.29 Score=55.18 Aligned_cols=41 Identities=22% Similarity=0.107 Sum_probs=26.3
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
|..+...+...+..+.-+.-.|++||.|+|||.++...+-.
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~ 59 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARA 59 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHH
Confidence 55555555554433333444589999999999887554433
No 353
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.52 E-value=0.35 Score=51.54 Aligned_cols=48 Identities=10% Similarity=0.038 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~ 136 (643)
.+.|||..++..+.+.+..+.-+.-.|+.||.|.||+..+...+-..+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~Ll 49 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLM 49 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHc
Confidence 356899999998887664444456678999999999998866554443
No 354
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.50 E-value=0.14 Score=56.53 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=65.6
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEE
Q 006476 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218 (643)
Q Consensus 139 g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llV 218 (643)
..+++|.++++.-+..+++.+... ++++..++|..+..++...++.+++|+++|+|+|. .+...+++.++++||
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~-----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-v~~rGiDip~v~~VI 328 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD-----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-VAARGLHIPAVTHVF 328 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC-----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-hhhcCCCccccCEEE
Confidence 578999999999999988888653 68999999999999999999999999999999995 455667788888877
Q ss_pred eec
Q 006476 219 VDE 221 (643)
Q Consensus 219 iDE 221 (643)
.-+
T Consensus 329 ~~d 331 (423)
T PRK04837 329 NYD 331 (423)
T ss_pred EeC
Confidence 543
No 355
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.44 E-value=0.64 Score=51.54 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=31.4
Q ss_pred CHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC--CCeEEEEec
Q 006476 91 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAP 147 (643)
Q Consensus 91 tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~--g~~vlil~P 147 (643)
.+....|...+.+-..+......++++||+|+|||..+-..+-..... +.+++++..
T Consensus 110 g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 110 GPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 344555555444322111123468999999999997754333333332 456676654
No 356
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.41 E-value=0.13 Score=54.39 Aligned_cols=58 Identities=19% Similarity=0.041 Sum_probs=44.0
Q ss_pred HHHHHHhHH--hhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHH
Q 006476 95 KKAFLDVER--DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155 (643)
Q Consensus 95 ~~ai~~i~~--~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~ 155 (643)
..+++.++. ++ +++.-+.+.||+|+|||..++..+......|..++++.+-..+-.+.
T Consensus 40 i~~LD~~Lg~GGl---p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~ 99 (325)
T cd00983 40 SLSLDIALGIGGY---PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVY 99 (325)
T ss_pred CHHHHHHhcCCCc---cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHH
Confidence 345555554 23 44667889999999999999998888888889999998776666543
No 357
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.40 E-value=0.3 Score=54.20 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=25.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
..+++.||+|+|||-.+-..+-.....+..++++..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 458999999999997765443333445777777654
No 358
>PRK04328 hypothetical protein; Provisional
Probab=94.39 E-value=0.21 Score=50.91 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=39.7
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
+.+.-+++.|++|+|||..++..+...+.+|..++++. +.+-..++.+.+.+
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~ 72 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQ 72 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHH
Confidence 35778899999999999999888888888888888887 44445555555543
No 359
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.36 E-value=0.26 Score=51.19 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=26.1
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHC-C-CeEEEEe
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSA-G-KQAMVLA 146 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~-g-~~vlil~ 146 (643)
.+..++++||||+|||..+...+...... | .+|.++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 35578899999999999976555544443 4 5666554
No 360
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.35 E-value=0.066 Score=60.32 Aligned_cols=49 Identities=24% Similarity=0.296 Sum_probs=40.8
Q ss_pred cCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH
Q 006476 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136 (643)
Q Consensus 85 ~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~ 136 (643)
.|||+|..+|.+-+.++.+-+.+ |+-.|...|||+|||+..+-+++..+
T Consensus 11 ~fPy~PYdIQ~~lM~elyrvLe~---GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 11 PFPYTPYDIQEDLMRELYRVLEE---GKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCCCCchhHHHHHHHHHHHHHhc---CCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 37899999999999999887743 56779999999999999777766554
No 361
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.33 E-value=0.4 Score=51.74 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=27.5
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHH
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
.|..++..+.+.+..+.-+...+++||.|+|||..+...
T Consensus 21 g~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 21 GQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 456666666665544444567899999999999877544
No 362
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=94.28 E-value=0.24 Score=55.25 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=63.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEE
Q 006476 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218 (643)
Q Consensus 139 g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llV 218 (643)
..+++|.++++.-+..+++.+.+. ++++..++|..+..++...++.+++|+++|+|+|. .+..-+++.++++||
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-v~~rGiDip~v~~VI 318 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD-----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-IAARGLDIEELPHVV 318 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-HHhcCCCcccCCEEE
Confidence 468999999999999988888653 68899999999999999999999999999999996 555667777887776
No 363
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.24 E-value=0.35 Score=51.44 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=28.9
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHH
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~ 135 (643)
.|..++..+.+.+..+.-+.-.|+.||.|+|||..+...+-..
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3666777666655433334556999999999998875544433
No 364
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.23 E-value=0.18 Score=53.26 Aligned_cols=56 Identities=25% Similarity=0.111 Sum_probs=42.0
Q ss_pred HHHHHhHH--hhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHH
Q 006476 96 KAFLDVER--DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 154 (643)
Q Consensus 96 ~ai~~i~~--~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q 154 (643)
.+++.++. ++ +++.-.+|.||+|+|||..++..+......|..++++-....+..+
T Consensus 41 ~~LD~~Lg~GGl---p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 41 LSLDLALGVGGL---PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV 98 (321)
T ss_pred HHHHHHhcCCCC---cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH
Confidence 34555553 33 4566788999999999999998888888888899988766555554
No 365
>PRK13767 ATP-dependent helicase; Provisional
Probab=94.22 E-value=0.32 Score=58.73 Aligned_cols=89 Identities=18% Similarity=0.277 Sum_probs=72.6
Q ss_pred HHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcC-CCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccccc
Q 006476 133 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK-YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVY 211 (643)
Q Consensus 133 ~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~-~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~ 211 (643)
...+..++++||.|+|+..|..++..+.+.+.. +.+..+...+|..+..++....+.+++|..+|+|||.. +...+++
T Consensus 278 ~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~-Le~GIDi 356 (876)
T PRK13767 278 HELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTS-LELGIDI 356 (876)
T ss_pred HHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-HHhcCCC
Confidence 344556889999999999999999998875542 12467999999999999999999999999999999975 4456788
Q ss_pred CccceEEeecc
Q 006476 212 NNLGLLVVDEE 222 (643)
Q Consensus 212 ~~l~llViDEa 222 (643)
.++++||.-..
T Consensus 357 p~Vd~VI~~~~ 367 (876)
T PRK13767 357 GYIDLVVLLGS 367 (876)
T ss_pred CCCcEEEEeCC
Confidence 89999886543
No 366
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.21 E-value=0.077 Score=62.28 Aligned_cols=82 Identities=22% Similarity=0.397 Sum_probs=63.3
Q ss_pred hcCCeEEEEecCccChHHHHHHHHhhCC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccc-ccccc-cc-
Q 006476 298 DRGGQVFYVLPRIKGLEEPMDFLQQAFP-----GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV-ESGLD-IQ- 369 (643)
Q Consensus 298 ~~~~qvlvf~~~~~~~e~l~~~L~~~~p-----~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~-~~GiD-ip- 369 (643)
.+|.++++++||..-+.++++.|+...+ ...+. +||.|+..++++++++|.+|..+|||+|+.+ ..-.| ++
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~ 201 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK 201 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc
Confidence 4678999999999888899988887642 23344 9999999999999999999999999999854 22222 22
Q ss_pred -CCCEEEEecCC
Q 006476 370 -NANTIIVQDVQ 380 (643)
Q Consensus 370 -~v~~VI~~d~p 380 (643)
+.+.|++.|.+
T Consensus 202 ~kFdfifVDDVD 213 (1187)
T COG1110 202 LKFDFIFVDDVD 213 (1187)
T ss_pred cCCCEEEEccHH
Confidence 35677776644
No 367
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.19 E-value=0.47 Score=50.09 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~ 136 (643)
.+.|+|...+..+.+.+..+.-+.-.|++||.|.||+..+...+-..+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ll 50 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALL 50 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHc
Confidence 467899999988877654444456789999999999988765554443
No 368
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.10 E-value=0.11 Score=54.83 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=43.2
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH---HCCCeEEEEeccHHHH
Q 006476 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV---SAGKQAMVLAPTIVLA 152 (643)
Q Consensus 80 ~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~---~~g~~vlil~Pt~~La 152 (643)
..+.+.+. +++.|.+.+..+.+ . +.+++++|+||||||+.. .+++..+ ..+.+++.+-.+.||.
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~---~---~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAID---S---RLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHH---c---CCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCcccc
Confidence 44444443 56788877776654 1 478999999999999764 4555554 2356777777777763
No 369
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.07 E-value=0.23 Score=55.28 Aligned_cols=76 Identities=11% Similarity=0.144 Sum_probs=63.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.|-|+--|.++...++.. +.++..+||+.+..++...++.+++|++.|+|+|.-. .+-+.+.++++|
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~-----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVA-aRGLDi~dV~lV 413 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRK-----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVA-ARGLDVPDVDLV 413 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhc-----CcceeeecccccHHHHHHHHHhcccCCcceEEEcccc-cccCCCccccEE
Confidence 3558999999999999998888763 4789999999999999999999999999999999632 234567777777
Q ss_pred Ee
Q 006476 218 VV 219 (643)
Q Consensus 218 Vi 219 (643)
|-
T Consensus 414 In 415 (519)
T KOG0331|consen 414 IN 415 (519)
T ss_pred Ee
Confidence 63
No 370
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=94.07 E-value=0.19 Score=55.48 Aligned_cols=76 Identities=13% Similarity=0.218 Sum_probs=65.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
...+++|.++++.-+..+++.+.+. ++++..++|..+..++...++.+++|+++|+|+|. .+...+++.++.+|
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-~~~~GiDip~v~~V 317 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKA-----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-VAARGIDIDDVSHV 317 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-ccccCccCCCCCEE
Confidence 3578999999999999998888752 68999999999999999999999999999999994 55556778888887
Q ss_pred Ee
Q 006476 218 VV 219 (643)
Q Consensus 218 Vi 219 (643)
|.
T Consensus 318 I~ 319 (434)
T PRK11192 318 IN 319 (434)
T ss_pred EE
Confidence 73
No 371
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.04 E-value=0.52 Score=55.76 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHH
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~ 135 (643)
...|--.|..-+..+..-+ .+....+.++.||+|+|||..+-..+...
T Consensus 180 ~l~~~igr~~ei~~~~~~L-~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVL-CRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCCcccCcHHHHHHHHHHH-hcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3344445666665555444 34556799999999999998875444433
No 372
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=94.04 E-value=0.022 Score=65.17 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=48.9
Q ss_pred hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhc---CCceEEEeccccccc
Q 006476 298 DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ---GAIKILICTNIVESG 365 (643)
Q Consensus 298 ~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~---g~~~ILVaT~i~~~G 365 (643)
..|.+|++|..-+..++-+.+++... + ....+.|..+..+|+..+.+|.. ...-.|+||...+.|
T Consensus 629 ~~ghrvl~~~q~~~~ldlled~~~~~--~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 629 SSGHRVLIFSQMIHMLDLLEDYLTYE--G-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hcchhhHHHHHHHHHHHHhHHHHhcc--C-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 44567777776666666666666655 4 67788999999999999999984 346689999887655
No 373
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.02 E-value=0.15 Score=53.52 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC---CCeEEEEeccHHHH
Q 006476 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLA 152 (643)
Q Consensus 90 ~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~---g~~vlil~Pt~~La 152 (643)
+++.|.+.+..+.+ .+.+++++|+||||||... .+++..+.. +.+++++-.+.++.
T Consensus 117 ~~~~~~~~L~~~v~------~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 117 MTAAQRDVLREAVL------ARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHHHHHHHH------cCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhhc
Confidence 44556666655543 2578999999999999764 445555432 56788888877763
No 374
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.99 E-value=0.53 Score=45.53 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=19.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCV 135 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~ 135 (643)
+...|+.||.|+|||..+...+...
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4668999999999998875554443
No 375
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.95 E-value=0.38 Score=52.47 Aligned_cols=130 Identities=12% Similarity=0.125 Sum_probs=72.4
Q ss_pred EEEEccCCCchHHHHHHHHH-HHHH--CCCeEEEEeccHH-HHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHH
Q 006476 114 RLICGDVGFGKTEVALRAIF-CVVS--AGKQAMVLAPTIV-LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 189 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~~i~-~~~~--~g~~vlil~Pt~~-La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~ 189 (643)
.++.|..|||||.++...++ ..+. .+.+++++-|+.. |...++..+...+..+ ++....-.. .+... + .
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~-~~~~~----i-~ 76 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKS-KSSME----I-K 76 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeec-CCccE----E-E
Confidence 58899999999999755544 4444 5678899999875 7777888887665554 332111111 00000 0 0
Q ss_pred Hhc-CCceEEEech-HhhhcccccCccceEEeecccccchhHHHH-HHhcC--CCceEEEeccCCCh
Q 006476 190 IKH-GHLNIIVGTH-SLLGSRVVYNNLGLLVVDEEQRFGVKQKEK-IASFK--ISVDVLTLSATPIP 251 (643)
Q Consensus 190 l~~-g~~dIiI~T~-~~L~~~~~~~~l~llViDEah~~g~~~~~~-l~~~~--~~~~vl~lSATp~~ 251 (643)
+.. | ..|++..- ..-.+......++++.+|||..+.....+. +.+++ .....+.+|.||..
T Consensus 77 ~~~~g-~~i~f~g~~d~~~~ik~~~~~~~~~idEa~~~~~~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 77 ILNTG-KKFIFKGLNDKPNKLKSGAGIAIIWFEEASQLTFEDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred ecCCC-eEEEeecccCChhHhhCcceeeeehhhhhhhcCHHHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 111 2 23444332 111111123446899999999985543332 33333 12224778999854
No 376
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.92 E-value=0.38 Score=50.53 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=19.3
Q ss_pred cEEEEccCCCchHHHHHHHHHHHH
Q 006476 113 DRLICGDVGFGKTEVALRAIFCVV 136 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~~i~~~~ 136 (643)
-.|++||.|+|||.++...+-...
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHh
Confidence 389999999999999876655544
No 377
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.91 E-value=0.82 Score=50.81 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=29.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHH---CCCeEEEEeccHHHHHHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTIVLAKQHFDVV 159 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~~---~g~~vlil~Pt~~La~Q~~~~~ 159 (643)
..+++.|++|+|||-.. .++...+. .+.+++++.+ ..+..+....+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 45889999999999554 44444332 3567776555 45555554444
No 378
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.91 E-value=0.13 Score=52.10 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=41.7
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
+++..+++.|++|+|||..++..+...+.+|..+++++ +.+-..|+.+++..
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs-~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA-LEEHPVQVRRNMAQ 70 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE-eeCCHHHHHHHHHH
Confidence 45678899999999999999888888888888999888 44566676666654
No 379
>PRK09183 transposase/IS protein; Provisional
Probab=93.90 E-value=0.51 Score=48.40 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=46.2
Q ss_pred CCCCChhHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHH
Q 006476 72 PYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 151 (643)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~L 151 (643)
.||...-.+.|.-.+...+...|...+..+. + -..+.++++.||+|+|||..+...+......|..|+++. ...|
T Consensus 67 ~~p~~~~l~~fd~~~~~~~~~~~i~~L~~~~--~--i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-~~~l 141 (259)
T PRK09183 67 AFPAVKTFEEYDFTFATGAPQKQLQSLRSLS--F--IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-AADL 141 (259)
T ss_pred CCCCCCcHhhcccccCCCCCHHHHHHHhcCC--c--hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-HHHH
Confidence 3444333444544444444554555543321 1 134678999999999999887655555566788887764 3344
Q ss_pred HHH
Q 006476 152 AKQ 154 (643)
Q Consensus 152 a~Q 154 (643)
..+
T Consensus 142 ~~~ 144 (259)
T PRK09183 142 LLQ 144 (259)
T ss_pred HHH
Confidence 443
No 380
>PRK06921 hypothetical protein; Provisional
Probab=93.87 E-value=1.4 Score=45.42 Aligned_cols=46 Identities=15% Similarity=0.064 Sum_probs=31.3
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHC-CCeEEEEeccHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHF 156 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~-g~~vlil~Pt~~La~Q~~ 156 (643)
.+..+++.|++|+|||..+...+-..... |..|+++.. ..+..++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~-~~l~~~l~ 162 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF-VEGFGDLK 162 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH-HHHHHHHH
Confidence 35789999999999997765444444555 677777654 45544443
No 381
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.77 E-value=0.43 Score=42.65 Aligned_cols=18 Identities=39% Similarity=0.445 Sum_probs=14.6
Q ss_pred EEEEccCCCchHHHHHHH
Q 006476 114 RLICGDVGFGKTEVALRA 131 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~~ 131 (643)
+++.||.|+|||..+-..
T Consensus 1 ill~G~~G~GKT~l~~~l 18 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARAL 18 (132)
T ss_dssp EEEESSTTSSHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHH
Confidence 589999999999776443
No 382
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.76 E-value=0.12 Score=54.73 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH---HCCCeEEEEeccHHH
Q 006476 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV---SAGKQAMVLAPTIVL 151 (643)
Q Consensus 90 ~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~---~~g~~vlil~Pt~~L 151 (643)
+++.|.+.+..+.+ .+++++++|+||||||.. +.++...+ ....+++++-.+.+|
T Consensus 133 ~~~~~~~~L~~~v~------~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVR------AHRNILVIGGTGSGKTTL-VNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHH------cCCeEEEECCCCCCHHHH-HHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 45777777766543 257899999999999955 44444442 335677777777765
No 383
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.75 E-value=0.49 Score=53.97 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=93.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHH--HCCCeEEEEeccHHHHHHHHHHHHHHhcCC-CCceEEEEeCCCChHHHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKY-PDIKVGLLSRFQSKAEKEEHLD 188 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~--~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~-~~i~v~~l~g~~~~~~~~~~~~ 188 (643)
+-.+++.|==.|||......+...+ ..|.++++.+|.+..++..++++..++..+ ++-.+..+.| .. +.-
T Consensus 255 k~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~------I~i 327 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ET------ISF 327 (738)
T ss_pred cceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cE------EEE
Confidence 5568888999999997552222233 358999999999999999999999876653 2222322222 00 000
Q ss_pred HHhcCC-ceEEEechHhhhcccccCccceEEeecccccchhHHHHHHhc--CCCceEEEeccCCChHhHHHHHhcCCCcc
Q 006476 189 MIKHGH-LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF--KISVDVLTLSATPIPRTLYLALTGFRDAS 265 (643)
Q Consensus 189 ~l~~g~-~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~--~~~~~vl~lSATp~~~~~~~~~~~~~~~~ 265 (643)
..++|. ..|.+++-. =.....=.+++++|||||+.+.......+.-. ..+.++|.+|.|-........+..+++..
T Consensus 328 ~f~nG~kstI~FaSar-ntNsiRGqtfDLLIVDEAqFIk~~al~~ilp~l~~~n~k~I~ISS~Ns~~~sTSFL~nLk~a~ 406 (738)
T PHA03368 328 SFPDGSRSTIVFASSH-NTNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQTNCKIIFVSSTNTGKASTSFLYNLKGAA 406 (738)
T ss_pred EecCCCccEEEEEecc-CCCCccCCcccEEEEechhhCCHHHHHHHHHHHhccCccEEEEecCCCCccchHHHHhhcCch
Confidence 112231 245554210 00112224789999999999866555443322 34889999999876554444444444432
Q ss_pred eeeCCCCCccceeEEEcc
Q 006476 266 LISTPPPERLPIKTHLSA 283 (643)
Q Consensus 266 ~i~~~~~~~~~v~~~~~~ 283 (643)
..-..|.+|+..
T Consensus 407 ------~~lLNVVsYvCd 418 (738)
T PHA03368 407 ------DELLNVVTYICD 418 (738)
T ss_pred ------hhheeeEEEECh
Confidence 234555666654
No 384
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.71 E-value=0.65 Score=48.71 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=24.6
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
|.+++..+...+. ......+++.||+|+|||..+-..
T Consensus 22 ~~~~~~~l~~~i~-~~~~~~~ll~G~~G~GKt~~~~~l 58 (319)
T PRK00440 22 QEEIVERLKSYVK-EKNMPHLLFAGPPGTGKTTAALAL 58 (319)
T ss_pred cHHHHHHHHHHHh-CCCCCeEEEECCCCCCHHHHHHHH
Confidence 5556665555442 233346899999999999876443
No 385
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.69 E-value=0.53 Score=55.11 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=29.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHH-HHCC-CeEEEEec--cHHHHHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCV-VSAG-KQAMVLAP--TIVLAKQHFDVVSE 161 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~-~~~g-~~vlil~P--t~~La~Q~~~~~~~ 161 (643)
+.-+.++||||+|||+.+...+... ...| +++.++.- .+.=+......+.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~ 239 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGR 239 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHH
Confidence 4557899999999998875444333 3445 46655543 23334343444444
No 386
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.69 E-value=0.59 Score=51.97 Aligned_cols=42 Identities=21% Similarity=0.145 Sum_probs=28.4
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~ 135 (643)
|..++..+.+.+..+.-+...|++||.|+|||.++...+-..
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 666666665554333334567899999999999886655443
No 387
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.67 E-value=0.76 Score=48.56 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=30.0
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~ 136 (643)
|.++...+.+.+..+.-+.-.|++||.|+||+..+...+-..+
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~ll 51 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLL 51 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 6666666665554444457889999999999988765554443
No 388
>PRK09354 recA recombinase A; Provisional
Probab=93.64 E-value=0.26 Score=52.48 Aligned_cols=57 Identities=25% Similarity=0.079 Sum_probs=42.8
Q ss_pred HHHHHhHH-hhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHH
Q 006476 96 KAFLDVER-DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 154 (643)
Q Consensus 96 ~ai~~i~~-~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q 154 (643)
..++.++. + .-+++.-..|.||+|||||..++..+......|..++++-.-..+-..
T Consensus 46 ~~LD~~LG~G--Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~ 103 (349)
T PRK09354 46 LALDIALGIG--GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV 103 (349)
T ss_pred HHHHHHhcCC--CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH
Confidence 34555543 1 124466778999999999999999988888889999998877666654
No 389
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.59 E-value=0.4 Score=47.15 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=32.4
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEecc
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt 148 (643)
.+.-..+.|++|+|||..++..+......+..++++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 456788999999999999988887777778888887764
No 390
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.55 E-value=0.12 Score=51.56 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=38.8
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHHHC-CCeEEEEeccHHHHHHHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
+.+..+++.|++|+|||..++..+...+.+ |..+++++- .+-..++.+.+.+
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s 69 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKS 69 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHH
Confidence 357789999999999999999999888888 889988874 3444666555553
No 391
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.51 E-value=0.3 Score=58.64 Aligned_cols=60 Identities=23% Similarity=0.251 Sum_probs=34.1
Q ss_pred HHHHHHHHhHHhhcc-------CCCC-CcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHH
Q 006476 93 DQKKAFLDVERDLTE-------RETP-MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 153 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~-------~~~~-~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~ 153 (643)
.|..|+..+...+.. .++| ..++++||||+|||..+-..+ ..+......++.....+...
T Consensus 572 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa-~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 572 GQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALA-NFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred CCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHH-HHhhcCCCcEEEEEhHHhhh
Confidence 677777766654421 1222 358999999999999874433 33332222344444444443
No 392
>PTZ00424 helicase 45; Provisional
Probab=93.44 E-value=0.31 Score=53.06 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=65.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
...+++|.++|+.-+...++.+.+. ++.+..++|+.+..++...++.+++|+.+|+|+|. .+...+++.++++|
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-~l~~GiDip~v~~V 339 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHER-----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-LLARGIDVQQVSLV 339 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-cccCCcCcccCCEE
Confidence 3568999999999888888777653 68899999999999999999999999999999996 56667888889988
Q ss_pred Eee
Q 006476 218 VVD 220 (643)
Q Consensus 218 ViD 220 (643)
|.-
T Consensus 340 I~~ 342 (401)
T PTZ00424 340 INY 342 (401)
T ss_pred EEE
Confidence 853
No 393
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=93.43 E-value=0.29 Score=54.57 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=66.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.|+|+.-+..+++.+.+. ++.+..++|..+..++...++..++|+.+|+|+|. .+...+++.++++|
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~-----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-v~~rGiDi~~v~~V 314 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQ-----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-VAARGLDIKALEAV 314 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-ccccccchhcCCeE
Confidence 3568999999999999999988764 68999999999999999999999999999999995 55556777888887
Q ss_pred Eeec
Q 006476 218 VVDE 221 (643)
Q Consensus 218 ViDE 221 (643)
|.-+
T Consensus 315 I~~d 318 (460)
T PRK11776 315 INYE 318 (460)
T ss_pred EEec
Confidence 7543
No 394
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.37 E-value=0.64 Score=44.26 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=25.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 114 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
.++.|++|+|||..+...+......|.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 578999999999998776666556677776654
No 395
>PHA02558 uvsW UvsW helicase; Provisional
Probab=93.30 E-value=0.53 Score=53.15 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=66.2
Q ss_pred HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccce
Q 006476 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216 (643)
Q Consensus 137 ~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~l 216 (643)
..+.+++|++.+++=+...++.+.+ . +.++..++|..+..++....+..+.|+..|+|+|-+.+...+++.+++.
T Consensus 342 ~~~~~~lV~~~~~~h~~~L~~~L~~----~-g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~ 416 (501)
T PHA02558 342 KKGENTFVMFKYVEHGKPLYEMLKK----V-YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHH 416 (501)
T ss_pred hcCCCEEEEEEEHHHHHHHHHHHHH----c-CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccE
Confidence 4578899999988766666666654 2 6899999999998888888888888988899999999998888999999
Q ss_pred EEee
Q 006476 217 LVVD 220 (643)
Q Consensus 217 lViD 220 (643)
||+.
T Consensus 417 vIl~ 420 (501)
T PHA02558 417 VIFA 420 (501)
T ss_pred EEEe
Confidence 9875
No 396
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=93.27 E-value=0.91 Score=47.88 Aligned_cols=40 Identities=15% Similarity=0.288 Sum_probs=27.2
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 133 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~ 133 (643)
|..++..+.+.+..+.-+.-.|++||-|+|||..+...+-
T Consensus 9 ~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~ 48 (313)
T PRK05564 9 HENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIAL 48 (313)
T ss_pred cHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHH
Confidence 5666666655553333445568999999999988765543
No 397
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.27 E-value=0.13 Score=51.50 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=17.2
Q ss_pred CccceEEeecccccchhHHHHHHhc
Q 006476 212 NNLGLLVVDEEQRFGVKQKEKIASF 236 (643)
Q Consensus 212 ~~l~llViDEah~~g~~~~~~l~~~ 236 (643)
...+.+||||++.+.......+...
T Consensus 61 ~~~~~liiDE~~~~~~g~l~~l~~~ 85 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPPGYLLLLLSL 85 (234)
T ss_pred CcCCEEEEeccccCChHHHHHHHhh
Confidence 4578999999999865444444443
No 398
>PHA02244 ATPase-like protein
Probab=93.23 E-value=1 Score=48.33 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=24.2
Q ss_pred CHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHH
Q 006476 91 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 91 tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
.|.+......+.+.+ ..+.++++.||||+|||..+-..
T Consensus 102 sp~~~~~~~ri~r~l---~~~~PVLL~GppGtGKTtLA~aL 139 (383)
T PHA02244 102 NPTFHYETADIAKIV---NANIPVFLKGGAGSGKNHIAEQI 139 (383)
T ss_pred CHHHHHHHHHHHHHH---hcCCCEEEECCCCCCHHHHHHHH
Confidence 343433333444433 23678999999999999776443
No 399
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.18 E-value=1.1 Score=49.03 Aligned_cols=77 Identities=23% Similarity=0.176 Sum_probs=51.2
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC--CCeEEEEeccHHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQH 155 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~--g~~vlil~Pt~~La~Q~ 155 (643)
+++.+++.-. .+-..|.+|.-. ...|.. .|.|=.|||||.+..+-+...... +-+++|.+-|+.|+.|+
T Consensus 152 ~l~~ieskIa-nfD~~Q~kaa~~-------~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~ 222 (660)
T COG3972 152 LLDTIESKIA-NFDTDQTKAAFQ-------SGFGKQ-RIRGLAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTM 222 (660)
T ss_pred HHHHHHHHHh-cccchhheeeee-------cCCchh-hhhcccCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHH
Confidence 5555554332 566678877422 222333 678999999999865544443333 45999999999999998
Q ss_pred HHHHHHHh
Q 006476 156 FDVVSERF 163 (643)
Q Consensus 156 ~~~~~~~~ 163 (643)
...+.+.+
T Consensus 223 r~lv~~F~ 230 (660)
T COG3972 223 RTLVPEFF 230 (660)
T ss_pred HHHHHHHH
Confidence 87766543
No 400
>PF13871 Helicase_C_4: Helicase_C-like
Probab=93.18 E-value=0.24 Score=50.91 Aligned_cols=66 Identities=18% Similarity=0.334 Sum_probs=51.0
Q ss_pred HHHHHHhcCCceEEEecccccccccccCC--------CEEEEecCCCCCHHHHHHHHhccCCCCCc-eEEEEEecC
Q 006476 343 ETMEKFAQGAIKILICTNIVESGLDIQNA--------NTIIVQDVQQFGLAQLYQLRGRVGRADKE-AHAYLFYPD 409 (643)
Q Consensus 343 ~v~~~F~~g~~~ILVaT~i~~~GiDip~v--------~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~-g~a~~l~~~ 409 (643)
...+.|.+|+.+|+|.|+.+++|+.+..- ++-|....| |+....+|..||+.|.|+. +-.|.++..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~p-wsad~aiQ~~GR~hRsnQ~~~P~y~~l~t 126 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELP-WSADKAIQQFGRTHRSNQVSAPEYRFLVT 126 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCC-CCHHHHHHHhccccccccccCCEEEEeec
Confidence 45678999999999999999999987631 234556677 5999999999999999863 444555543
No 401
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.18 E-value=0.47 Score=47.22 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=31.2
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCC------CeEEEEeccH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAG------KQAMVLAPTI 149 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g------~~vlil~Pt~ 149 (643)
.+.-..|.|++|+|||..++..+......+ ..++++....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 466789999999999999887777666555 6788877543
No 402
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.15 E-value=0.7 Score=44.25 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=31.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccH
Q 006476 113 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~ 149 (643)
-+.+..++|.|||.+++-.+++++..|.+|+++.=.+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlK 43 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIK 43 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 4667778999999999999999999999999885433
No 403
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.10 E-value=0.25 Score=50.72 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
|.+||..++....++..+. .+.++++.||+|+|||..+...+. . -|..++.+.
T Consensus 1 ~~~t~~~~~l~~~~l~~l~---~g~~vLL~G~~GtGKT~lA~~la~-~--lg~~~~~i~ 53 (262)
T TIGR02640 1 FIETDAVKRVTSRALRYLK---SGYPVHLRGPAGTGKTTLAMHVAR-K--RDRPVMLIN 53 (262)
T ss_pred CCCCHHHHHHHHHHHHHHh---cCCeEEEEcCCCCCHHHHHHHHHH-H--hCCCEEEEe
Confidence 4578888888888877663 267899999999999998854432 2 255555553
No 404
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=93.09 E-value=0.25 Score=55.37 Aligned_cols=76 Identities=21% Similarity=0.124 Sum_probs=52.7
Q ss_pred HHHHHHHHHhHHhh--ccCCCCCcEEEEccCCCchHHHHHH-HHHHHHH---CCCeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 92 PDQKKAFLDVERDL--TERETPMDRLICGDVGFGKTEVALR-AIFCVVS---AGKQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 92 p~Q~~ai~~i~~~~--~~~~~~~d~li~a~TGsGKT~~~l~-~i~~~~~---~g~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
|+|.-.+..++-.. ....+-+.+++.-+=|.|||..... .++..+. .+.++++.++++.-|...++.+...+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 67887777665310 0112234678888999999988543 3333332 3679999999999999999999887665
Q ss_pred CC
Q 006476 166 YP 167 (643)
Q Consensus 166 ~~ 167 (643)
.|
T Consensus 81 ~~ 82 (477)
T PF03354_consen 81 SP 82 (477)
T ss_pred Ch
Confidence 54
No 405
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=93.08 E-value=0.39 Score=53.84 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=64.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEE
Q 006476 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218 (643)
Q Consensus 139 g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llV 218 (643)
..+++|.++++.-+..+++.+.+. ++.+..++|+.+..++...++.+++|+.+|+|+|. .+...+++.++++||
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~-~l~~GIDi~~v~~VI 408 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKD-----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD-VAGRGIHIDGISHVI 408 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc-ccccCCcccCCCEEE
Confidence 458999999999999888877643 67899999999999999999999999999999995 555667888899888
Q ss_pred ee
Q 006476 219 VD 220 (643)
Q Consensus 219 iD 220 (643)
.-
T Consensus 409 ~~ 410 (475)
T PRK01297 409 NF 410 (475)
T ss_pred Ee
Confidence 64
No 406
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=93.04 E-value=0.37 Score=55.84 Aligned_cols=75 Identities=17% Similarity=0.253 Sum_probs=65.2
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEE
Q 006476 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218 (643)
Q Consensus 139 g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llV 218 (643)
..+++|.|+|+.-+.++++.+.+. ++.+..+++..+..++...++.+++|+++|+|+|. .+..-+.+.++++||
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~-----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATd-v~arGIDip~V~~VI 318 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERN-----GYNSAALNGDMNQALREQTLERLKDGRLDILIATD-VAARGLDVERISLVV 318 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhC-----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcc-hHhcCCCcccCCEEE
Confidence 468999999999999998888763 67899999999999999999999999999999996 555567788888887
Q ss_pred e
Q 006476 219 V 219 (643)
Q Consensus 219 i 219 (643)
.
T Consensus 319 ~ 319 (629)
T PRK11634 319 N 319 (629)
T ss_pred E
Confidence 5
No 407
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=93.00 E-value=0.36 Score=55.84 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=66.9
Q ss_pred HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccce
Q 006476 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216 (643)
Q Consensus 137 ~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~l 216 (643)
..+.+++|.++|+.-+.++++.+.+. ++++..++++.+..++....+....|+.+|+|+|.. +...+++.++++
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~-----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a-~~~GIDip~V~~ 307 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSR-----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVA-FGMGINKPNVRF 307 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEech-hhccCCCCCcCE
Confidence 35678999999999999999888763 789999999999999999999999999999999974 456677888988
Q ss_pred EEe
Q 006476 217 LVV 219 (643)
Q Consensus 217 lVi 219 (643)
||.
T Consensus 308 VI~ 310 (607)
T PRK11057 308 VVH 310 (607)
T ss_pred EEE
Confidence 884
No 408
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=92.88 E-value=0.6 Score=52.97 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=64.2
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEE
Q 006476 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218 (643)
Q Consensus 139 g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llV 218 (643)
.++++|.++++.-+..+++.+... .++++..++|..+..++...++.+++|+.+|+|+|. .+...+++.++++||
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~----~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-vl~rGiDip~v~~VI 441 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVV----TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-VLGRGVDLLRVRQVI 441 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhc----cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-HhhccCCcccCCEEE
Confidence 468999999999888887776542 268899999999999999999999999999999996 455667888888888
Q ss_pred e
Q 006476 219 V 219 (643)
Q Consensus 219 i 219 (643)
.
T Consensus 442 ~ 442 (518)
T PLN00206 442 I 442 (518)
T ss_pred E
Confidence 5
No 409
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.83 E-value=1 Score=48.09 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH
Q 006476 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136 (643)
Q Consensus 90 ~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~ 136 (643)
+.|||...+..+..- .+.-+.-.|+.||.|.||+..+...+-..+
T Consensus 2 ~yPW~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 2 LYPWQTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred CCcccHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 368888888887652 233456778999999999998865554443
No 410
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.80 E-value=0.16 Score=54.08 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=31.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 153 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~ 153 (643)
+.+++++|+||||||.. +.+++..+..+.+++.+--+.||..
T Consensus 160 ~~nili~G~tgSGKTTl-l~aL~~~ip~~~ri~tiEd~~El~l 201 (332)
T PRK13900 160 KKNIIISGGTSTGKTTF-TNAALREIPAIERLITVEDAREIVL 201 (332)
T ss_pred CCcEEEECCCCCCHHHH-HHHHHhhCCCCCeEEEecCCCcccc
Confidence 68999999999999965 4666677666778877766666543
No 411
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.75 E-value=0.16 Score=54.27 Aligned_cols=41 Identities=22% Similarity=0.544 Sum_probs=31.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 152 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La 152 (643)
+.+++++|+||||||+.. .+++..+..+.+++.+-.+.+|.
T Consensus 162 ~~nilI~G~tGSGKTTll-~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMS-KTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred CCeEEEECCCCccHHHHH-HHHHcccCCCCCEEEECCCcccc
Confidence 689999999999999654 55556565667788888887664
No 412
>PRK09694 helicase Cas3; Provisional
Probab=92.68 E-value=0.89 Score=54.43 Aligned_cols=91 Identities=14% Similarity=0.259 Sum_probs=65.6
Q ss_pred HHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHH----HHHHHH-hcCC---ceEEE
Q 006476 128 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKE----EHLDMI-KHGH---LNIIV 199 (643)
Q Consensus 128 ~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~----~~~~~l-~~g~---~dIiI 199 (643)
.+..+...+..|++++|+++|..-|++.++.+++.+.. ..++.++++..+..++. +.++.+ ++|+ ..|+|
T Consensus 549 ~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~--~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 549 LLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNT--QVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCC--CceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 34445556678999999999999999999999875432 46899999987766663 344445 4554 36999
Q ss_pred echHhhhcccccCccceEEeecc
Q 006476 200 GTHSLLGSRVVYNNLGLLVVDEE 222 (643)
Q Consensus 200 ~T~~~L~~~~~~~~l~llViDEa 222 (643)
+| +.+...+.+ +++++|.|-+
T Consensus 627 aT-QViE~GLDI-d~DvlItdla 647 (878)
T PRK09694 627 AT-QVVEQSLDL-DFDWLITQLC 647 (878)
T ss_pred EC-cchhheeec-CCCeEEECCC
Confidence 99 555555555 5788998855
No 413
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.58 E-value=0.35 Score=57.02 Aligned_cols=38 Identities=32% Similarity=0.467 Sum_probs=25.6
Q ss_pred HHHHHHHHhHHhhcc-------CCCC-CcEEEEccCCCchHHHHHH
Q 006476 93 DQKKAFLDVERDLTE-------RETP-MDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~-------~~~~-~d~li~a~TGsGKT~~~l~ 130 (643)
.|.+|+..+...+.. ..+| ..++++||||+|||+.+-.
T Consensus 462 GQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~ 507 (758)
T PRK11034 462 GQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQ 507 (758)
T ss_pred CcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHH
Confidence 377777766554321 1223 3689999999999998743
No 414
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=92.46 E-value=0.67 Score=52.48 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=62.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEE
Q 006476 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218 (643)
Q Consensus 139 g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llV 218 (643)
..+++|.+.|+..+...+..+... |+++..++|..+..++...+..+++|+.+|+|+|.-. .+.+.+.++.+||
T Consensus 273 ~~~~IVF~~tk~~~~~l~~~l~~~-----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDva-aRGiDi~~v~~Vi 346 (513)
T COG0513 273 EGRVIVFVRTKRLVEELAESLRKR-----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVA-ARGLDIPDVSHVI 346 (513)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHC-----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechh-hccCCccccceeE
Confidence 347999999999999988887764 7899999999999999999999999999999999643 3445566666653
No 415
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.36 E-value=1.9 Score=46.41 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=18.8
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCV 135 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~ 135 (643)
..++.+.+.|++|.|||. ++-++..
T Consensus 60 ~~~~GlYl~G~vG~GKT~--Lmd~f~~ 84 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTM--LMDLFYD 84 (362)
T ss_pred CCCceEEEECCCCCchhH--HHHHHHH
Confidence 357889999999999995 4444433
No 416
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.26 E-value=0.46 Score=57.00 Aligned_cols=54 Identities=26% Similarity=0.398 Sum_probs=32.5
Q ss_pred HHHHHHHHhHHhhcc-------CCCCC-cEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 93 DQKKAFLDVERDLTE-------RETPM-DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~-------~~~~~-d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
.|..|+..+.+.+.. ..+|. .++++||||+|||..+-..+- .+..+...++...
T Consensus 570 GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~-~l~~~~~~~~~~d 631 (852)
T TIGR03345 570 GQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE-LLYGGEQNLITIN 631 (852)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH-HHhCCCcceEEEe
Confidence 588888877654421 12333 479999999999988743332 2333344444444
No 417
>PRK05973 replicative DNA helicase; Provisional
Probab=92.23 E-value=0.25 Score=49.93 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=39.9
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
++.-++|.|++|+|||..++..+.....+|.+++|++-- +=..|+.+++..
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE-es~~~i~~R~~s 113 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE-YTEQDVRDRLRA 113 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe-CCHHHHHHHHHH
Confidence 466789999999999999998888887888888888644 235666666654
No 418
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.23 E-value=0.25 Score=54.43 Aligned_cols=42 Identities=26% Similarity=0.250 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~ 136 (643)
..+|.|.+.+..+++ .+.| =+|+.||||||||... .+++..+
T Consensus 241 g~~~~~~~~~~~~~~----~p~G-liLvTGPTGSGKTTTL-Y~~L~~l 282 (500)
T COG2804 241 GMSPFQLARLLRLLN----RPQG-LILVTGPTGSGKTTTL-YAALSEL 282 (500)
T ss_pred CCCHHHHHHHHHHHh----CCCe-EEEEeCCCCCCHHHHH-HHHHHHh
Confidence 447888888777764 3444 4789999999999774 3334443
No 419
>CHL00176 ftsH cell division protein; Validated
Probab=92.23 E-value=3.8 Score=47.60 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=17.0
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l 129 (643)
.++.+|+.||+|+|||..+-
T Consensus 215 ~p~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35679999999999998763
No 420
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=92.07 E-value=0.7 Score=50.79 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=61.8
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEE
Q 006476 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218 (643)
Q Consensus 139 g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llV 218 (643)
.+.++|.+.++.-|.-+++.+.+. +.++..++|+.+..++...+..++.|..+|+|||.-.= +.+...|+++||
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~-----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAg-RGIDIpnVSlVi 590 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA-----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAG-RGIDIPNVSLVI 590 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc-----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccc-cCCCCCccceee
Confidence 578999999998888888877763 78999999999999999999999999999999996432 235667777765
No 421
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=92.06 E-value=1.4 Score=47.22 Aligned_cols=85 Identities=14% Similarity=0.308 Sum_probs=63.6
Q ss_pred HHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHH----HHHHHhcCCceEEEechHhhhc
Q 006476 132 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEE----HLDMIKHGHLNIIVGTHSLLGS 207 (643)
Q Consensus 132 i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~----~~~~l~~g~~dIiI~T~~~L~~ 207 (643)
++.....+.+++|.++|+.-+..+++.+++.. ++..+..++|..+..++.. .++.+++|+..|+|+|. .+..
T Consensus 215 l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~---~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~-~~~~ 290 (358)
T TIGR01587 215 LLEFIKKGGKIAIIVNTVDRAQEFYQQLKENA---PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ-VIEA 290 (358)
T ss_pred HHHHhhCCCeEEEEECCHHHHHHHHHHHHhhc---CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc-chhc
Confidence 34555668899999999999999999887642 2357999999888777754 36778889999999997 4444
Q ss_pred ccccCccceEEeec
Q 006476 208 RVVYNNLGLLVVDE 221 (643)
Q Consensus 208 ~~~~~~l~llViDE 221 (643)
.+++ +++++|.+.
T Consensus 291 GiDi-~~~~vi~~~ 303 (358)
T TIGR01587 291 SLDI-SADVMITEL 303 (358)
T ss_pred eecc-CCCEEEEcC
Confidence 5555 356666553
No 422
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.98 E-value=0.2 Score=52.71 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHH
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~ 155 (643)
..++.|...+..+.+. ..++|++|.||||||+.. -++...+...-+++.+--|.+|..++
T Consensus 157 t~~~~~a~~L~~av~~------r~NILisGGTGSGKTTlL-Nal~~~i~~~eRvItiEDtaELql~~ 216 (355)
T COG4962 157 TMIRRAAKFLRRAVGI------RCNILISGGTGSGKTTLL-NALSGFIDSDERVITIEDTAELQLAH 216 (355)
T ss_pred CcCHHHHHHHHHHHhh------ceeEEEeCCCCCCHHHHH-HHHHhcCCCcccEEEEeehhhhccCC
Confidence 7889999988777651 479999999999999763 33333444556899999998876654
No 423
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.98 E-value=0.49 Score=56.02 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=25.1
Q ss_pred HHHHHHHHhHHhhcc-------CCCCC-cEEEEccCCCchHHHHHHH
Q 006476 93 DQKKAFLDVERDLTE-------RETPM-DRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~-------~~~~~-d~li~a~TGsGKT~~~l~~ 131 (643)
.|..|+..+.+.+.. ..++. .++++||||+|||+.+-..
T Consensus 458 GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~l 504 (731)
T TIGR02639 458 GQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQL 504 (731)
T ss_pred CcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHH
Confidence 366677666544321 12233 4799999999999887443
No 424
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=91.97 E-value=0.5 Score=49.09 Aligned_cols=55 Identities=22% Similarity=0.145 Sum_probs=33.1
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHH--HC-----CCeEEEEeccHHHHHHHHHHHHHHh
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVV--SA-----GKQAMVLAPTIVLAKQHFDVVSERF 163 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~--~~-----g~~vlil~Pt~~La~Q~~~~~~~~~ 163 (643)
.+.-+.+++|+||.|||.+.-...-.+- .+ -+-+.+-+|...=....|..+...+
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 3345789999999999987533222110 00 1244555677666666666665544
No 425
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.95 E-value=0.34 Score=46.93 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
..++.|.+.+....+ .+..++++|+||||||... .++...+.....++.+--
T Consensus 9 ~~~~~~~~~l~~~v~------~g~~i~I~G~tGSGKTTll-~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 9 TFSPLQAAYLWLAVE------ARKNILISGGTGSGKTTLL-NALLAFIPPDERIITIED 60 (186)
T ss_pred CCCHHHHHHHHHHHh------CCCEEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEECC
Confidence 456778888776654 2678999999999999764 344444444445555433
No 426
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.84 E-value=0.44 Score=53.30 Aligned_cols=53 Identities=28% Similarity=0.372 Sum_probs=41.0
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHH------HCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVV------SAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~------~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
+++.-++|+|..|||||.+++.-+...+ ..+++|+|+.|.+.++.-+.+.+-+
T Consensus 224 ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPe 282 (747)
T COG3973 224 EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPE 282 (747)
T ss_pred cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchh
Confidence 4467789999999999999875544333 2356799999999998887776654
No 427
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.79 E-value=2.1 Score=46.90 Aligned_cols=124 Identities=17% Similarity=0.186 Sum_probs=62.4
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHH-HCC-Ce-EEEEecc-HHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVV-SAG-KQ-AMVLAPT-IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEE 185 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~-~~g-~~-vlil~Pt-~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~ 185 (643)
.+.-+.++||||+|||......+...+ ..+ .. .++...+ +.-+.++...+.+.+ |+.+..... ..+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~il----Gvp~~~v~~---~~dl~~ 262 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLL----GVSVRSIKD---IADLQL 262 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHc----CCceecCCC---HHHHHH
Confidence 355688999999999998644333322 222 23 4444444 344444444444433 344433322 222111
Q ss_pred HHHHHhcCCceEEEechHhhhcccccCccceEEeecccccc--hhHHHHHHhc---C-CCceEEEeccCCChHhHHHHHh
Q 006476 186 HLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFG--VKQKEKIASF---K-ISVDVLTLSATPIPRTLYLALT 259 (643)
Q Consensus 186 ~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g--~~~~~~l~~~---~-~~~~vl~lSATp~~~~~~~~~~ 259 (643)
.+. .+++.++++||.+=+.- ....+.+..+ . +...+|.+|||...+.......
T Consensus 263 al~---------------------~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~ 321 (420)
T PRK14721 263 MLH---------------------ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVIS 321 (420)
T ss_pred HHH---------------------HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHH
Confidence 111 24555677777652211 0112223222 2 3345788999987777765554
Q ss_pred cC
Q 006476 260 GF 261 (643)
Q Consensus 260 ~~ 261 (643)
.+
T Consensus 322 ~f 323 (420)
T PRK14721 322 AY 323 (420)
T ss_pred Hh
Confidence 43
No 428
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=91.64 E-value=0.24 Score=51.08 Aligned_cols=39 Identities=21% Similarity=0.432 Sum_probs=25.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHH--HHC-CCeEEEEeccHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCV--VSA-GKQAMVLAPTIV 150 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~--~~~-g~~vlil~Pt~~ 150 (643)
|--.+|-|||||||+ ..++.++.. +.. .-.|++++|++-
T Consensus 87 P~I~~VYGPTG~GKS-qLlRNLis~~lI~P~PETVfFItP~~~ 128 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKS-QLLRNLISCQLIQPPPETVFFITPQKD 128 (369)
T ss_pred ceEEEEECCCCCCHH-HHHHHhhhcCcccCCCCceEEECCCCC
Confidence 344678999999999 344444332 222 347899999863
No 429
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=91.60 E-value=0.45 Score=45.45 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=16.4
Q ss_pred CCCCcEEEEccCCCchHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~ 128 (643)
..+..++|.|++|+||+..|
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA 39 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLA 39 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHH
Confidence 44688999999999999776
No 430
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.55 E-value=2.2 Score=47.67 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=31.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHH-HHCCC-eEEEEe--ccHHHHHHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCV-VSAGK-QAMVLA--PTIVLAKQHFDVVSER 162 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~-~~~g~-~vlil~--Pt~~La~Q~~~~~~~~ 162 (643)
+.-+.++||||+|||++....+... ...|. +|.++. +-+.-+.+....+.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~Aei 311 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKI 311 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHH
Confidence 5568899999999999975554433 34443 554433 2244455555555543
No 431
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.54 E-value=1 Score=51.53 Aligned_cols=43 Identities=28% Similarity=0.348 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 137 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~ 137 (643)
.+.|.|.+.+..+.. .....++++||||||||+.. .+++..+.
T Consensus 299 g~~~~~~~~l~~~~~-----~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 299 GFEPDQKALFLEAIH-----KPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred CCCHHHHHHHHHHHH-----hcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 346777777776654 12356889999999999875 44455543
No 432
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.50 E-value=1.1 Score=48.41 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=17.1
Q ss_pred CCCCcEEEEccCCCchHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~ 128 (643)
.+|+..+|.||.|+|||..+
T Consensus 167 GkGQR~lIvgppGvGKTTLa 186 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLL 186 (416)
T ss_pred ccCceEEEeCCCCCChhHHH
Confidence 45788999999999999654
No 433
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.47 E-value=1.1 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=19.6
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIF 133 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~ 133 (643)
....+.|+.||+|+|||..+-..+.
T Consensus 205 ~~~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 205 RRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999988644443
No 434
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.46 E-value=1.3 Score=47.81 Aligned_cols=50 Identities=20% Similarity=0.187 Sum_probs=36.8
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 160 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~ 160 (643)
.+.-+++.|++|+|||..++..+......+.+++++.-. +-..|+..+..
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E-Es~~qi~~Ra~ 130 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE-ESPEQIKLRAD 130 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC-cCHHHHHHHHH
Confidence 356678999999999999887777666677788888754 33456555543
No 435
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=91.45 E-value=1.1 Score=53.23 Aligned_cols=88 Identities=14% Similarity=0.102 Sum_probs=71.8
Q ss_pred HHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCC---CCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccc
Q 006476 134 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY---PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV 210 (643)
Q Consensus 134 ~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~---~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~ 210 (643)
..+..+.+++|.+.|+..+..++..+++.+... .+.++..++|+.+..++....+.+++|+.+++|+|.. +..-++
T Consensus 266 ~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~-lerGID 344 (742)
T TIGR03817 266 DLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNA-LELGVD 344 (742)
T ss_pred HHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECch-HhccCC
Confidence 344568899999999999999999887654331 1467889999999999999999999999999999954 445577
Q ss_pred cCccceEEeecc
Q 006476 211 YNNLGLLVVDEE 222 (643)
Q Consensus 211 ~~~l~llViDEa 222 (643)
+.++++||.-..
T Consensus 345 I~~vd~VI~~~~ 356 (742)
T TIGR03817 345 ISGLDAVVIAGF 356 (742)
T ss_pred cccccEEEEeCC
Confidence 889998887764
No 436
>PRK06835 DNA replication protein DnaC; Validated
Probab=91.28 E-value=0.54 Score=49.96 Aligned_cols=44 Identities=20% Similarity=0.168 Sum_probs=31.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~ 155 (643)
..++++.|+||+|||..+...+...+..|..|+++. ...|..+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t-~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT-ADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE-HHHHHHHH
Confidence 478999999999999877655556666777776654 44555543
No 437
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.28 E-value=1.6 Score=52.58 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHH
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i 132 (643)
..|--.|..-+..+..-+. +....+.++.||+|+|||.++-..+
T Consensus 172 ~~~~igr~~ei~~~~~~l~-r~~~~n~lL~G~pGvGKT~l~~~la 215 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLS-RRTKNNPVLIGEPGVGKTAIVEGLA 215 (852)
T ss_pred CCcCCCcHHHHHHHHHHHh-cCCCCceEEEcCCCCCHHHHHHHHH
Confidence 3443346666666655442 4456789999999999998874433
No 438
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.27 E-value=2.2 Score=45.22 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=18.3
Q ss_pred CCCCCcEEEEccCCCchHHHH
Q 006476 108 RETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 108 ~~~~~d~li~a~TGsGKT~~~ 128 (643)
-..|+.+|+.||+|+|||+.|
T Consensus 182 I~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 182 IDPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCCCCceEeeCCCCCcHHHHH
Confidence 456889999999999999776
No 439
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.26 E-value=1.1 Score=51.09 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=25.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHH--CCCeEEEEeccHHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQH 155 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~~--~g~~vlil~Pt~~La~Q~ 155 (643)
..++|+|++|+|||-.+-..+..... .+.+|+++.- ..++.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita-eef~~el 359 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS-EEFTNEF 359 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-HHHHHHH
Confidence 34899999999999664333333322 3566666543 4455443
No 440
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.25 E-value=0.41 Score=49.23 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CCCeEEEEeccHH
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIV 150 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g~~vlil~Pt~~ 150 (643)
.+.+.|.+.+..++. .....++++|+||||||... .+++..+. .+..++.+--..+
T Consensus 63 g~~~~~~~~l~~~~~-----~~~GlilisG~tGSGKTT~l-~all~~i~~~~~~iitiEdp~E 119 (264)
T cd01129 63 GLKPENLEIFRKLLE-----KPHGIILVTGPTGSGKTTTL-YSALSELNTPEKNIITVEDPVE 119 (264)
T ss_pred CCCHHHHHHHHHHHh-----cCCCEEEEECCCCCcHHHHH-HHHHhhhCCCCCeEEEECCCce
Confidence 357788888876654 12346899999999999765 33444443 3455655544433
No 441
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=91.24 E-value=1.2 Score=44.03 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=31.2
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
.+.-.++.|++|+|||..++..+......|..++++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3556889999999999999888887777788898883
No 442
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=91.21 E-value=0.86 Score=47.12 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=33.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHH
Q 006476 114 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~ 155 (643)
.=++||-|||||.+++.++..+...|..++|+--...|-.+-
T Consensus 63 tEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r 104 (279)
T COG0468 63 TEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPER 104 (279)
T ss_pred EEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHH
Confidence 346999999999999999999988888888886555444443
No 443
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.18 E-value=1.7 Score=42.62 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=23.7
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHC--CCeEEEEeccHHH
Q 006476 114 RLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVL 151 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~~i~~~~~~--g~~vlil~Pt~~L 151 (643)
++++||||||||+.. ..++..+.. +..++.+.-..++
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKNKTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhcCCcEEEEEcCCccc
Confidence 689999999999885 333444332 3456665554443
No 444
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.18 E-value=1.9 Score=46.84 Aligned_cols=52 Identities=19% Similarity=0.142 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCC
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 140 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~ 140 (643)
-.+..-+..++.....+.. +....-++++|++|+|||-..-...-.....++
T Consensus 91 ~g~~N~~A~aa~~~va~~~-g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~ 142 (408)
T COG0593 91 VGPSNRLAYAAAKAVAENP-GGAYNPLFIYGGVGLGKTHLLQAIGNEALANGP 142 (408)
T ss_pred eCCchHHHHHHHHHHHhcc-CCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCC
Confidence 3555555555433333211 113467899999999999554333333333444
No 445
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=91.15 E-value=3 Score=39.97 Aligned_cols=129 Identities=18% Similarity=0.268 Sum_probs=57.5
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeC-CCCh-HHHHHHHHHHh
Q 006476 114 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR-FQSK-AEKEEHLDMIK 191 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g-~~~~-~~~~~~~~~l~ 191 (643)
+.|---.|=|||.+++-.+++++..|.+|+++.=.+-- -.+-+... +..++++.+..... +... ...........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~--~~~GE~~~-l~~l~~~~~~~~g~~f~~~~~~~~~~~~~~~ 82 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGG--RYSGELKA-LKKLPNVEIERFGKGFVWRMNEEEEDRAAAR 82 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--S--S--HHHHH-HGGGT--EEEE--TT----GGGHHHHHHHHH
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCC--CCcCHHHH-HHhCCeEEEEEcCCcccccCCCcHHHHHHHH
Confidence 44455568999999999999999999999999866651 11122221 33444444432221 1111 11111111111
Q ss_pred cCCceEEEechHhhhcccccCccceEEeecccc---cch----hHHHHHHhcCCCceEEEeccCCChHhH
Q 006476 192 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQR---FGV----KQKEKIASFKISVDVLTLSATPIPRTL 254 (643)
Q Consensus 192 ~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~---~g~----~~~~~l~~~~~~~~vl~lSATp~~~~~ 254 (643)
++ -....+.+.-..+++||+||+=. +|. ...+.+...+....+| +|.--.|..+
T Consensus 83 ~~--------~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evV-lTGR~~~~~l 143 (172)
T PF02572_consen 83 EG--------LEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVV-LTGRNAPEEL 143 (172)
T ss_dssp HH--------HHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEE-EE-SS--HHH
T ss_pred HH--------HHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEE-EECCCCCHHH
Confidence 11 01111223346789999999974 232 2234455555566665 5555444443
No 446
>COG1485 Predicted ATPase [General function prediction only]
Probab=91.10 E-value=2.2 Score=45.12 Aligned_cols=138 Identities=16% Similarity=0.148 Sum_probs=72.1
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhc----------------c--CCCCCcEEEEccCCCchHHHHHHHHHHHHHCC
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLT----------------E--RETPMDRLICGDVGFGKTEVALRAIFCVVSAG 139 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~----------------~--~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g 139 (643)
........+.+.+-|.|..++..+-+-.. . ...++.+.+.|++|.||| +++..+.....+
T Consensus 14 ~y~~~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT--~LMD~Fy~~lp~ 91 (367)
T COG1485 14 RYAQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKT--MLMDLFYESLPG 91 (367)
T ss_pred HHHHhcccCCCCCChHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHH--HHHHHHHhhCCc
Confidence 33444555566667777776665432110 0 113467899999999999 555555443322
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEe
Q 006476 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVV 219 (643)
Q Consensus 140 ~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llVi 219 (643)
.+ -.-++...-+..+.+++... . | ..|.+-..-.. ..++..++.+
T Consensus 92 ~~-k~R~HFh~FM~~vH~~l~~l-~-----------g-----------------~~dpl~~iA~~-----~~~~~~vLCf 136 (367)
T COG1485 92 ER-KRRLHFHRFMARVHQRLHTL-Q-----------G-----------------QTDPLPPIADE-----LAAETRVLCF 136 (367)
T ss_pred cc-cccccHHHHHHHHHHHHHHH-c-----------C-----------------CCCccHHHHHH-----HHhcCCEEEe
Confidence 11 11234445555555555432 1 1 11111000011 1467789999
Q ss_pred ecccccchhHHHH----HHh-cCCCceEEEeccCCChH
Q 006476 220 DEEQRFGVKQKEK----IAS-FKISVDVLTLSATPIPR 252 (643)
Q Consensus 220 DEah~~g~~~~~~----l~~-~~~~~~vl~lSATp~~~ 252 (643)
||.|--....--. +.. +..++.+++.|-|++..
T Consensus 137 DEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~ 174 (367)
T COG1485 137 DEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDN 174 (367)
T ss_pred eeeeecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHH
Confidence 9999632221111 222 24588888888887543
No 447
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=91.06 E-value=0.89 Score=52.47 Aligned_cols=75 Identities=12% Similarity=0.180 Sum_probs=63.6
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEE
Q 006476 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218 (643)
Q Consensus 139 g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llV 218 (643)
+.+++|.++|+..+.++++.+... ++++..++++.+..++....+...+|.++|+|+|.. +...+++.++++||
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~-----g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a-~~~GID~p~v~~VI 297 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQ-----GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNA-FGMGIDKPNVRFVI 297 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEech-hhccCcCCCCCEEE
Confidence 678999999999999999888753 688999999999999999999999999999999964 44456677888777
Q ss_pred e
Q 006476 219 V 219 (643)
Q Consensus 219 i 219 (643)
.
T Consensus 298 ~ 298 (591)
T TIGR01389 298 H 298 (591)
T ss_pred E
Confidence 4
No 448
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.05 E-value=0.53 Score=56.48 Aligned_cols=41 Identities=27% Similarity=0.435 Sum_probs=27.9
Q ss_pred HHHHHHHHHhHHhhcc-------CCCCC-cEEEEccCCCchHHHHHHHH
Q 006476 92 PDQKKAFLDVERDLTE-------RETPM-DRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 92 p~Q~~ai~~i~~~~~~-------~~~~~-d~li~a~TGsGKT~~~l~~i 132 (643)
..|..|+..+.+.+.. ..+|. .++++||||+|||..+-..+
T Consensus 512 ~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA 560 (821)
T CHL00095 512 IGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALA 560 (821)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHH
Confidence 3699998887654421 12222 47899999999998875443
No 449
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=91.04 E-value=0.39 Score=48.80 Aligned_cols=82 Identities=23% Similarity=0.314 Sum_probs=57.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCc
Q 006476 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNN 213 (643)
Q Consensus 139 g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~ 213 (643)
.+.++||+..-.=|..+.+.++. |..- +..|+-+.. ......++...+..+.++|.||||+++.+ .+.+++
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~-~~~k-~~~v~KLFa--KH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRS-FKGK-DCKVAKLFA--KHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHh-hccC-CchHHHHHH--hhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 46899999988888888887775 3210 234444433 12233456677788889999999999864 456789
Q ss_pred cceEEeecccc
Q 006476 214 LGLLVVDEEQR 224 (643)
Q Consensus 214 l~llViDEah~ 224 (643)
+.+||||--|.
T Consensus 202 l~~ivlD~s~~ 212 (252)
T PF14617_consen 202 LKRIVLDWSYL 212 (252)
T ss_pred CeEEEEcCCcc
Confidence 99999998774
No 450
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=90.92 E-value=1.5 Score=45.34 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchHHHH
Q 006476 111 PMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~ 128 (643)
..+.++.||+|+|||..+
T Consensus 111 ~~~~~i~g~~g~GKttl~ 128 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLL 128 (270)
T ss_pred eeEEEEEcCCCCCHHHHH
Confidence 368999999999999654
No 451
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=90.88 E-value=0.53 Score=40.54 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=31.8
Q ss_pred ceeeeecCCCCCCchHHHhcCCCCcHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006476 14 IMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYL 63 (643)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~~~~~~~~~~~~~~l~~~~~ 63 (643)
+.+.||+++.+ .. |.|++|++ .+|++++.+.+......+.++++.|+
T Consensus 52 ~~i~R~v~~~~-~~-~~l~~L~~-~~W~~r~~~lk~~~~~~~~~lik~l~ 98 (98)
T PF02559_consen 52 DKIGRYVGSRE-EA-PLLDKLGS-IEWKKRKRKLKSGDIEEAAELIKLLA 98 (98)
T ss_dssp GGEEE--SS-S-SS------TT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCcCCcc-ch-hHHHHcCC-hhHHHHHHHHHhccHHHHHHHHHHhC
Confidence 45669999866 43 99999986 77999999999999999999999875
No 452
>PF12846 AAA_10: AAA-like domain
Probab=90.79 E-value=0.38 Score=49.71 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=33.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 153 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~ 153 (643)
.+++++|+||||||......+...+..|..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHH
Confidence 468999999999998887666677778888888877654444
No 453
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.78 E-value=1.7 Score=52.27 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=26.9
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
|..-|..+..-+ .+....+.++.||+|+|||.++-..+..
T Consensus 183 r~~ei~~~i~iL-~r~~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 183 RDEEIRRTIQVL-QRRTKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CHHHHHHHHHHH-hcCCcCceEEECCCCCCHHHHHHHHHHH
Confidence 555555555433 2345678999999999999887544433
No 454
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=90.77 E-value=3.8 Score=46.18 Aligned_cols=20 Identities=40% Similarity=0.614 Sum_probs=17.0
Q ss_pred CCCCcEEEEccCCCchHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~ 128 (643)
..++.+|+.||+|+|||..+
T Consensus 214 ~~p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CCCcceEEECCCCCcHHHHH
Confidence 34678999999999999875
No 455
>PRK10436 hypothetical protein; Provisional
Probab=90.60 E-value=0.49 Score=52.61 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 136 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~ 136 (643)
.+.+.|.+.+..+.. ....-+|++||||||||... .+++..+
T Consensus 201 G~~~~~~~~l~~~~~-----~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 201 GMTPAQLAQFRQALQ-----QPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CcCHHHHHHHHHHHH-----hcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 456778888777654 12356899999999999875 3444444
No 456
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=90.52 E-value=4.7 Score=41.83 Aligned_cols=63 Identities=13% Similarity=0.045 Sum_probs=37.2
Q ss_pred ChhHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEE--EEccCCCchHHHHHHHHHHHHHCC
Q 006476 76 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRL--ICGDVGFGKTEVALRAIFCVVSAG 139 (643)
Q Consensus 76 ~~~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~l--i~a~TGsGKT~~~l~~i~~~~~~g 139 (643)
+.+...+....+-+ .-.++..++.+...+.+....+..+ +.|.||+||..|+-+.+-.....|
T Consensus 74 ~~Le~dL~~~lfGQ-Hla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G 138 (344)
T KOG2170|consen 74 DGLEKDLARALFGQ-HLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG 138 (344)
T ss_pred hHHHHHHHHHhhch-HHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcc
Confidence 34666666554433 3345556666766664332233333 479999999999866655544444
No 457
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.46 E-value=0.27 Score=50.55 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=30.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCC-CeEEEEeccHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVL 151 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g-~~vlil~Pt~~L 151 (643)
+.+++++|+||||||... .+++..+... .+++++-.+.++
T Consensus 127 ~~~ili~G~tGSGKTT~l-~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL-NALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp TEEEEEEESTTSSHHHHH-HHHHHHCHTTTSEEEEEESSS-S
T ss_pred ceEEEEECCCccccchHH-HHHhhhccccccceEEeccccce
Confidence 578999999999999775 5556666666 788888877654
No 458
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.41 E-value=1 Score=47.52 Aligned_cols=73 Identities=14% Similarity=0.227 Sum_probs=60.5
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEE
Q 006476 140 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218 (643)
Q Consensus 140 ~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llV 218 (643)
.+.+|.|.|+.-|..++.++.+. |..|.+++|..+..++.......+.|...|+|+|.-.- +.+....+.+||
T Consensus 331 gqsiIFc~tk~ta~~l~~~m~~~-----Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~A-RGiDv~qVs~Vv 403 (477)
T KOG0332|consen 331 GQSIIFCHTKATAMWLYEEMRAE-----GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCA-RGIDVAQVSVVV 403 (477)
T ss_pred hheEEEEeehhhHHHHHHHHHhc-----CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhh-cccccceEEEEE
Confidence 57899999999999999999875 88999999999999999999999999999999996433 233344444444
No 459
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=90.18 E-value=9 Score=43.19 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=17.5
Q ss_pred CCCCcEEEEccCCCchHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l 129 (643)
..++.+|+.||+|+|||..+-
T Consensus 86 ~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHH
Confidence 446789999999999998763
No 460
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=90.16 E-value=0.22 Score=61.97 Aligned_cols=94 Identities=19% Similarity=0.306 Sum_probs=75.0
Q ss_pred eEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCC-----------HHHHHHHHHHHhcCCceEEEecccccccccccC
Q 006476 302 QVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY-----------SRQLEETMEKFAQGAIKILICTNIVESGLDIQN 370 (643)
Q Consensus 302 qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~-----------~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~ 370 (643)
..++|++....+....+.++..+ ...+..+.|.+. .-.+.+++..|...++++|++|.+++.|+|+|.
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIF-SNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhh-ccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 34678888888888888777664 223333444432 234778999999999999999999999999999
Q ss_pred CCEEEEecCCCCCHHHHHHHHhccCCC
Q 006476 371 ANTIIVQDVQQFGLAQLYQLRGRVGRA 397 (643)
Q Consensus 371 v~~VI~~d~p~~s~~~~~Qr~GR~GR~ 397 (643)
++.|+.++.|. ....|+|..||+-+.
T Consensus 373 ~~~~~~~~~~~-~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 373 CNLVVLFDAPT-YYRSYVQKKGRARAA 398 (1606)
T ss_pred hhhheeccCcc-hHHHHHHhhcccccc
Confidence 99999999997 789999999999665
No 461
>PRK04195 replication factor C large subunit; Provisional
Probab=90.04 E-value=3.7 Score=46.12 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=23.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
+..+++.||+|+|||..+-..+-.. +..++.+-+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el---~~~~ielna 72 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY---GWEVIELNA 72 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEcc
Confidence 6789999999999998765443332 555666644
No 462
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=89.97 E-value=1.6 Score=46.45 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCchHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~ 128 (643)
....++|.|++|+||+.++
T Consensus 21 ~~~pVLI~GE~GtGK~~lA 39 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIA 39 (329)
T ss_pred CCCCEEEECCCCChHHHHH
Confidence 3678999999999999876
No 463
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=89.91 E-value=0.53 Score=46.93 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=39.4
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
.+.-+++.|++|+|||..++..+...+.+|..++++.-. +-..|+.+.+..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e-~~~~~l~~~~~~ 65 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE-EREERILGYAKS 65 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC-CCHHHHHHHHHH
Confidence 466789999999999999888888888888888887654 345666665543
No 464
>PRK01172 ski2-like helicase; Provisional
Probab=89.83 E-value=1.8 Score=50.84 Aligned_cols=88 Identities=20% Similarity=0.312 Sum_probs=65.7
Q ss_pred HHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCC--------------------ceEEEEeCCCChHHHHHHHHHHhcCCc
Q 006476 136 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD--------------------IKVGLLSRFQSKAEKEEHLDMIKHGHL 195 (643)
Q Consensus 136 ~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~--------------------i~v~~l~g~~~~~~~~~~~~~l~~g~~ 195 (643)
..++++++|.+|++.-+...+..+.+.+..... ..++..+++.+..++....+..++|..
T Consensus 233 ~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i 312 (674)
T PRK01172 233 VNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYI 312 (674)
T ss_pred HhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 567889999999999998888887765432211 247888999999999999999999999
Q ss_pred eEEEechHhhhcccccCccceEEeeccccc
Q 006476 196 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRF 225 (643)
Q Consensus 196 dIiI~T~~~L~~~~~~~~l~llViDEah~~ 225 (643)
+|+|+|.-. ...+++... .+||+...++
T Consensus 313 ~VLvaT~~l-a~Gvnipa~-~VII~~~~~~ 340 (674)
T PRK01172 313 KVIVATPTL-AAGVNLPAR-LVIVRDITRY 340 (674)
T ss_pred eEEEecchh-hccCCCcce-EEEEcCceEe
Confidence 999999653 334555543 5666655544
No 465
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=89.81 E-value=1.5 Score=46.22 Aligned_cols=50 Identities=12% Similarity=0.081 Sum_probs=33.0
Q ss_pred HHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH------CCCeEEEEecc
Q 006476 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVLAPT 148 (643)
Q Consensus 97 ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~------~g~~vlil~Pt 148 (643)
.++.++.+ .-+.+.-..++|+.|+|||..++..+..... .+.+|+|+.-.
T Consensus 84 ~LD~lLgG--Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE 139 (313)
T TIGR02238 84 ALDGILGG--GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTE 139 (313)
T ss_pred HHHHHhCC--CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcC
Confidence 45555542 1234566789999999999998877665432 24578888643
No 466
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=89.77 E-value=0.55 Score=46.93 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=35.1
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~ 158 (643)
+.+..+++.|++|+|||..+...+...+.+|..++++.- .+.+.++.+.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~-e~~~~~i~~~ 66 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT-EESRESIIRQ 66 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc-cCCHHHHHHH
Confidence 346788999999999999887766666667878877764 3334444444
No 467
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=89.70 E-value=1.4 Score=42.25 Aligned_cols=37 Identities=3% Similarity=-0.044 Sum_probs=30.3
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHH
Q 006476 114 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 150 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~ 150 (643)
+.|--..|=|||.+++-.+++++..|.+|+|+.=.+-
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg 60 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKG 60 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecC
Confidence 3444456899999999999999999999999976554
No 468
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=89.62 E-value=1.1 Score=44.64 Aligned_cols=24 Identities=29% Similarity=0.204 Sum_probs=18.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
--++++.||+|+|||......+-.
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred CCceEeeCCCCCchhhHHHHHHHH
Confidence 347899999999999987554433
No 469
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.58 E-value=1.6 Score=47.38 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=20.1
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVV 136 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~ 136 (643)
..|+.++|.||+|+|||..+-. +...+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 4578899999999999976433 44443
No 470
>PHA00350 putative assembly protein
Probab=89.54 E-value=0.91 Score=49.27 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=24.0
Q ss_pred cEEEEccCCCchHHHHHH-HHHHHHHCCCeE
Q 006476 113 DRLICGDVGFGKTEVALR-AIFCVVSAGKQA 142 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~-~i~~~~~~g~~v 142 (643)
-.++.|..|||||.-++. .++.++..|..|
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~GR~V 33 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKV 33 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCCCEE
Confidence 358899999999999876 467777788644
No 471
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=89.47 E-value=3.8 Score=44.70 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=18.0
Q ss_pred CCCCcEEEEccCCCchHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~ 130 (643)
..++.++++||+|+|||..+-.
T Consensus 163 ~~p~gvLL~GppGtGKT~lAka 184 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKA 184 (389)
T ss_pred CCCCceEEECCCCCChHHHHHH
Confidence 3467899999999999987633
No 472
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.44 E-value=3.4 Score=49.62 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=26.9
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~ 135 (643)
..+-|..+..-+ ......+.++.||+|+|||.++-..+...
T Consensus 184 r~~ei~~~~~~L-~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 184 REKEIERVIQIL-GRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred cHHHHHHHHHHH-cccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 444444444434 24456789999999999998875544443
No 473
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=89.39 E-value=0.58 Score=47.91 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=41.8
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
+.+..++|.|++|||||.-++..+...+..|..+++++- .+...++.+.+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~-~e~~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST-EESPEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEe-cCCHHHHHHHHHH
Confidence 557889999999999999999999888888888888764 4556666666654
No 474
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=89.37 E-value=1 Score=52.71 Aligned_cols=67 Identities=24% Similarity=0.287 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC----CeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG----KQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g----~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
.++|.|.+|+... ...++|.|..|||||.+...-+...+..+ .+++.++=|+-.|.++.+++.+.++
T Consensus 2 ~Ln~~Q~~av~~~---------~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP---------DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC---------CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5899999997554 35689999999999999866666655543 3799999999999999999988665
No 475
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.36 E-value=6.3 Score=38.98 Aligned_cols=125 Identities=17% Similarity=0.138 Sum_probs=73.1
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe---ccHHHHHHHHHH---HHHHhcCCCCceEEEE---eCCCCh
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA---PTIVLAKQHFDV---VSERFSKYPDIKVGLL---SRFQSK 180 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~---Pt~~La~Q~~~~---~~~~~~~~~~i~v~~l---~g~~~~ 180 (643)
-|.=+++.|+-|+|||....+.++-.+.+|.++.+++ |+++...|+-.- +.+.|-. ..+.+..+ .-..+.
T Consensus 27 ~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~-G~l~~~~~~~~~~~~~~ 105 (235)
T COG2874 27 VGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLS-GRLLFFPVNLEPVNWGR 105 (235)
T ss_pred cCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhc-ceeEEEEecccccccCh
Confidence 3566799999999999999999998999999998886 456666654221 0000000 01122221 111122
Q ss_pred HHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchh--------HHHHHHhcCCCceEEEeccCCC
Q 006476 181 AEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVK--------QKEKIASFKISVDVLTLSATPI 250 (643)
Q Consensus 181 ~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~--------~~~~l~~~~~~~~vl~lSATp~ 250 (643)
...+..++. +.+.....+-+++|||=...+... ....++.+...-+++.+|+-|.
T Consensus 106 ~~~~~~L~~---------------l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~ 168 (235)
T COG2874 106 RSARKLLDL---------------LLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPS 168 (235)
T ss_pred HHHHHHHHH---------------HHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeChh
Confidence 222222222 222334566788999988765321 1244556666778999998873
No 476
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=89.31 E-value=0.86 Score=36.92 Aligned_cols=55 Identities=20% Similarity=0.399 Sum_probs=48.6
Q ss_pred CceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeeccc
Q 006476 168 DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQ 223 (643)
Q Consensus 168 ~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah 223 (643)
++++..+++..+..++...++.+.++..+|+|+| ..+...+++.+++.||+=+.+
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t-~~~~~Gid~~~~~~vi~~~~~ 61 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIAT-DILGEGIDLPDASHVIFYDPP 61 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEES-CGGTTSSTSTTESEEEESSSE
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEee-ccccccccccccccccccccC
Confidence 7999999999999999999999999999999999 567777888888888876664
No 477
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=88.87 E-value=0.74 Score=46.28 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=38.6
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
+.+.-+++.|++|+|||..+...+...+.+|.+++++.=-. -..++.+.+.+
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~-~~~~~~~~~~~ 74 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN-TSKSYLKQMES 74 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC-CHHHHHHHHHH
Confidence 44677899999999999998888787777888888887543 23455555543
No 478
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=88.79 E-value=0.63 Score=46.83 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=31.6
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHC-CCeEEEEec
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAP 147 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~-g~~vlil~P 147 (643)
++.-.+|+|++|+|||..++..+...+.+ |..++++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 46678999999999999988877877776 888888873
No 479
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=88.64 E-value=3 Score=48.95 Aligned_cols=105 Identities=23% Similarity=0.254 Sum_probs=60.4
Q ss_pred HHHHHHHHhHHhh-------ccCCCC-CcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 93 DQKKAFLDVERDL-------TERETP-MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 93 ~Q~~ai~~i~~~~-------~~~~~~-~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
-|..|+..+.+.+ ....+| ..++..||||.|||+.+-..+ ..+-.+...+|-....+-...| .+....+
T Consensus 495 GQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA-~~Lfg~e~aliR~DMSEy~EkH--sVSrLIG 571 (786)
T COG0542 495 GQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALA-EALFGDEQALIRIDMSEYMEKH--SVSRLIG 571 (786)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHH-HHhcCCCccceeechHHHHHHH--HHHHHhC
Confidence 4888887765433 222333 377889999999999874333 3334455677766666655544 3334444
Q ss_pred CCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccch
Q 006476 165 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV 227 (643)
Q Consensus 165 ~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~ 227 (643)
..|| -|++=.| +.|.+.+.-+-+++|.+||...--.
T Consensus 572 aPPG-YVGyeeG--------------------------G~LTEaVRr~PySViLlDEIEKAHp 607 (786)
T COG0542 572 APPG-YVGYEEG--------------------------GQLTEAVRRKPYSVILLDEIEKAHP 607 (786)
T ss_pred CCCC-Cceeccc--------------------------cchhHhhhcCCCeEEEechhhhcCH
Confidence 4442 2332222 1232333345578999999986433
No 480
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=88.64 E-value=1.4 Score=49.34 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=24.9
Q ss_pred cCccceEEeecccccchhHHHH-HHhc-CCCceEEEeccCC
Q 006476 211 YNNLGLLVVDEEQRFGVKQKEK-IASF-KISVDVLTLSATP 249 (643)
Q Consensus 211 ~~~l~llViDEah~~g~~~~~~-l~~~-~~~~~vl~lSATp 249 (643)
..++.+.||||+|.+....... |+.+ .+..+++..=||-
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecC
Confidence 4688999999999987655444 3333 2344455555553
No 481
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=88.58 E-value=1.1 Score=54.16 Aligned_cols=42 Identities=29% Similarity=0.300 Sum_probs=28.3
Q ss_pred HHHHHHHHHhHHhhccC-------CCC-CcEEEEccCCCchHHHHHHHHH
Q 006476 92 PDQKKAFLDVERDLTER-------ETP-MDRLICGDVGFGKTEVALRAIF 133 (643)
Q Consensus 92 p~Q~~ai~~i~~~~~~~-------~~~-~d~li~a~TGsGKT~~~l~~i~ 133 (643)
..|..|+..+...+... .++ ..+++.||||+|||+++-..+-
T Consensus 568 ~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 568 VGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred CCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 45788887776655321 112 3588999999999988754443
No 482
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=88.57 E-value=0.77 Score=45.77 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=32.1
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEecc
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt 148 (643)
.+.-.++.|++|+|||..++..+...+..+..++++.-.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 466789999999999999988888777778888887543
No 483
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=88.44 E-value=0.6 Score=52.19 Aligned_cols=57 Identities=23% Similarity=0.201 Sum_probs=42.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEe
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLS 175 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~ 175 (643)
.++++.||||||||..+++|.+- ..+..++|.=|--+|........++. |-+|.++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll--~~~~s~iV~D~KgEl~~~t~~~r~~~-----G~~V~vld 101 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL--NYPGSMIVTDPKGELYEKTAGYRKKR-----GYKVYVLD 101 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH--hccCCEEEEECCCcHHHHHHHHHHHC-----CCEEEEee
Confidence 46899999999999999887653 33458888889989988777665543 33555554
No 484
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=88.42 E-value=1.8 Score=43.29 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=28.6
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHC------CCeEEEEec
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSA------GKQAMVLAP 147 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~------g~~vlil~P 147 (643)
.+.-..+.|++|+|||..++..+...... +..++++.-
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 46778999999999999988776654433 367777764
No 485
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=88.39 E-value=1.8 Score=47.19 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=41.4
Q ss_pred CCCCChhHHHHHhcCCCCCCHHHHHH-HHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH-HHHCC
Q 006476 72 PYPKNPAIAEFAAQFPYEPTPDQKKA-FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC-VVSAG 139 (643)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~tp~Q~~a-i~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~-~~~~g 139 (643)
.|..++|.+-+..+..|+|+....++ +..+.+-+.--.++.|++..||+|+|||-.|...... ++..|
T Consensus 169 ~FT~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG 238 (449)
T TIGR02688 169 EFTLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG 238 (449)
T ss_pred hcCHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC
Confidence 45556688888888888776443222 2222111001134689999999999999777544444 45556
No 486
>PRK11823 DNA repair protein RadA; Provisional
Probab=88.34 E-value=2.8 Score=46.60 Aligned_cols=50 Identities=24% Similarity=0.221 Sum_probs=37.8
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 160 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~ 160 (643)
.+.-.++.|++|+|||..++..+......+.+++++.-. +-..|+..+..
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E-es~~qi~~ra~ 128 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE-ESASQIKLRAE 128 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-ccHHHHHHHHH
Confidence 356778999999999999887777666678889988753 44566666554
No 487
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.31 E-value=8.7 Score=45.61 Aligned_cols=21 Identities=38% Similarity=0.475 Sum_probs=17.3
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
.++.+++.||+|+|||..+-.
T Consensus 486 ~~~giLL~GppGtGKT~laka 506 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKA 506 (733)
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 466799999999999987643
No 488
>PRK08939 primosomal protein DnaI; Reviewed
Probab=88.28 E-value=1.2 Score=46.77 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=30.7
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 154 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q 154 (643)
.+..+++.|++|+|||..+...+-.....|..+.++.- ..|+.+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~-~~l~~~ 198 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF-PEFIRE 198 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH-HHHHHH
Confidence 45689999999999998776555556666777766532 244444
No 489
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=88.24 E-value=0.79 Score=51.43 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC-CCeEEEE
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVL 145 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-g~~vlil 145 (643)
.++|.|.+.+..+.. .+ ..-++++||||||||... .+++..+.. +..++.+
T Consensus 225 g~~~~~~~~l~~~~~----~~-~GlilitGptGSGKTTtL-~a~L~~l~~~~~~iiTi 276 (486)
T TIGR02533 225 GMSPELLSRFERLIR----RP-HGIILVTGPTGSGKTTTL-YAALSRLNTPERNILTV 276 (486)
T ss_pred CCCHHHHHHHHHHHh----cC-CCEEEEEcCCCCCHHHHH-HHHHhccCCCCCcEEEE
Confidence 457888888777654 22 235789999999999875 333444432 3344443
No 490
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=88.19 E-value=4.3 Score=46.29 Aligned_cols=149 Identities=19% Similarity=0.198 Sum_probs=85.4
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHHHHHHhcCCC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK-QAMVLAPTIVLAKQHFDVVSERFSKYP 167 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~-~vlil~Pt~~La~Q~~~~~~~~~~~~~ 167 (643)
.-|-+|.+|+....+.+.++....-+-+.|.-|-||+.+.-+++..++.-|. .+.|..|.-+=....++-+-+-|....
T Consensus 253 ~kT~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~GysnIyvtSPspeNlkTlFeFv~kGfDaL~ 332 (1011)
T KOG2036|consen 253 CKTLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGYSNIYVTSPSPENLKTLFEFVFKGFDALE 332 (1011)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCcceEEEcCCChHHHHHHHHHHHcchhhhc
Confidence 3488999999887776655555556778899999999998888888887776 667778887666555544332222110
Q ss_pred ---CceEEEEeCCCChHHHHHHHHHHhcCCceEEEec-h-Hhhh-----cccccCccceEEeecccccchhHHHHHHhcC
Q 006476 168 ---DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT-H-SLLG-----SRVVYNNLGLLVVDEEQRFGVKQKEKIASFK 237 (643)
Q Consensus 168 ---~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T-~-~~L~-----~~~~~~~l~llViDEah~~g~~~~~~l~~~~ 237 (643)
.+...++.+.. +. + ++--+.|-|.- | +.+. +...+...+++|||||-.+.......+.
T Consensus 333 Yqeh~Dy~iI~s~n-p~-----f---kkaivRInifr~hrQtIQYi~P~D~~kl~q~eLlVIDEAAAIPLplvk~Li--- 400 (1011)
T KOG2036|consen 333 YQEHVDYDIIQSTN-PD-----F---KKAIVRINIFREHRQTIQYISPHDHQKLGQAELLVIDEAAAIPLPLVKKLI--- 400 (1011)
T ss_pred chhhcchhhhhhcC-hh-----h---hhhEEEEEEeccccceeEeeccchhhhccCCcEEEechhhcCCHHHHHHhh---
Confidence 00001111100 00 0 00001111111 1 1111 2234567789999999987665444332
Q ss_pred CCceEEEeccCCC
Q 006476 238 ISVDVLTLSATPI 250 (643)
Q Consensus 238 ~~~~vl~lSATp~ 250 (643)
.+.++.|+.|..
T Consensus 401 -gPylVfmaSTin 412 (1011)
T KOG2036|consen 401 -GPYLVFMASTIN 412 (1011)
T ss_pred -cceeEEEeeccc
Confidence 567788888853
No 491
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.03 E-value=0.38 Score=49.90 Aligned_cols=20 Identities=35% Similarity=0.420 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
..|+++.||||||||+.|--
T Consensus 97 KSNILLiGPTGsGKTlLAqT 116 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQT 116 (408)
T ss_pred eccEEEECCCCCcHHHHHHH
Confidence 36899999999999987643
No 492
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=87.96 E-value=1.2 Score=55.14 Aligned_cols=83 Identities=24% Similarity=0.405 Sum_probs=63.6
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCC--CCc---EEEEeCCCCHHHHHHHHHHHhcCCceEEEecccc-ccccc-cc-C
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQAFP--GVD---IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV-ESGLD-IQ-N 370 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~~p--~~~---v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~-~~GiD-ip-~ 370 (643)
++.+++|++|+++-+.++++.++.... ++. +..+||+++..+++..++.+.+|..+|||+|+-. ...++ +. +
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~ 199 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPK 199 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCC
Confidence 478999999999999999888887653 222 3468999999999999999999999999999732 11111 12 6
Q ss_pred CCEEEEecCCC
Q 006476 371 ANTIIVQDVQQ 381 (643)
Q Consensus 371 v~~VI~~d~p~ 381 (643)
++++|+.+++.
T Consensus 200 ~~~iVvDEaD~ 210 (1171)
T TIGR01054 200 FDFIFVDDVDA 210 (1171)
T ss_pred CCEEEEeChHh
Confidence 88888877664
No 493
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=87.91 E-value=7.7 Score=41.19 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH
Q 006476 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 90 ~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
..|||..++..+... .+.-+.-.|++||.|.|||..+...+-.
T Consensus 2 ~yPW~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~ 44 (325)
T PRK08699 2 IYPWHQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQA 44 (325)
T ss_pred CCCccHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHH
Confidence 368899999888753 1233456889999999999987555443
No 494
>PHA02542 41 41 helicase; Provisional
Probab=87.68 E-value=1.4 Score=49.30 Aligned_cols=50 Identities=8% Similarity=0.014 Sum_probs=34.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
+.-+++.|.+|.|||..++..+......|+.|+++.- -.=..|+..++..
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSL-EM~~~ql~~Rl~a 239 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISM-EMAEEVIAKRIDA 239 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEec-cCCHHHHHHHHHH
Confidence 4456789999999999998877777777888887752 2223444555543
No 495
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.66 E-value=1.4 Score=49.68 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=16.9
Q ss_pred CCCCcEEEEccCCCchHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~ 128 (643)
..++.+|+.||.|+|||..|
T Consensus 221 ~PprGvLlHGPPGCGKT~lA 240 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLA 240 (802)
T ss_pred CCCCceeeeCCCCccHHHHH
Confidence 45788999999999999654
No 496
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=87.57 E-value=0.9 Score=48.56 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHH
Q 006476 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 152 (643)
Q Consensus 90 ~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La 152 (643)
+++.+.+.+..+.+ .+.+++++|+||||||... .++...+....+++++-.+.||.
T Consensus 163 ~~~~~~~~L~~~v~------~~~~ili~G~tGsGKTTll-~al~~~i~~~~riv~iEd~~El~ 218 (340)
T TIGR03819 163 FPPGVARLLRAIVA------ARLAFLISGGTGSGKTTLL-SALLALVAPDERIVLVEDAAELR 218 (340)
T ss_pred CCHHHHHHHHHHHh------CCCeEEEECCCCCCHHHHH-HHHHccCCCCCcEEEECCcceec
Confidence 34556565555543 2579999999999999654 44444455566777777776663
No 497
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=87.53 E-value=1.1 Score=50.24 Aligned_cols=52 Identities=17% Similarity=0.072 Sum_probs=42.7
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
.++.-+++.||+|+|||..++..+...+.+|.++++++ .-+-..|+..++..
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~ 312 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYS 312 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHH
Confidence 45678899999999999999988888888888898877 55667777777654
No 498
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=87.51 E-value=1.6 Score=52.55 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHH
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i 132 (643)
.|--.|..-|..+..-+. +....+.++.||.|+|||.++-..+
T Consensus 187 d~~iGr~~ei~~~i~~l~-r~~~~n~lLvG~pGvGKTal~~~La 229 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILL-RRRQNNPILTGEAGVGKTAVVEGLA 229 (852)
T ss_pred CcccCCHHHHHHHHHHHh-cCCcCceeEECCCCCCHHHHHHHHH
Confidence 333347777777765442 4556789999999999998874433
No 499
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=87.45 E-value=22 Score=37.84 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=39.9
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCcEEE-----EeCCCCHHHHHHHHHHHhcCCceEEEecc
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAI-----AHGQQYSRQLEETMEKFAQGAIKILICTN 360 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~-----~hg~~~~~~r~~v~~~F~~g~~~ILVaT~ 360 (643)
++.+++.|+ .+..=+...+.|+.. |+.+.- =|-..+..+.+......+... .+|+|.
T Consensus 226 ~~~~v~a~s-GIg~P~~F~~~L~~~--G~~~~~~~~f~DHh~yt~~dl~~l~~~a~~~~--~iltTe 287 (326)
T PF02606_consen 226 KGKPVLAFS-GIGNPERFFDTLESL--GIEVVGTLAFPDHHRYTEQDLEKLEAEAKAAG--IILTTE 287 (326)
T ss_pred cCCeeEEEE-EcCChHHHHHHHHHc--CCeEEEeeECCCCCCCCHHHHHHHHHhhcccc--eEEecH
Confidence 455666554 567778888888886 655442 266778888888887776555 888885
No 500
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=87.44 E-value=4.7 Score=47.43 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=16.9
Q ss_pred CCCCcEEEEccCCCchHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~ 128 (643)
..+..++|.|++|+|||.+|
T Consensus 397 ~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 397 QSDSTVLILGETGTGKELIA 416 (686)
T ss_pred CCCCCEEEECCCCcCHHHHH
Confidence 34578999999999999876
Done!