Query 006476
Match_columns 643
No_of_seqs 644 out of 4227
Neff 7.9
Searched_HMMs 29240
Date Tue Mar 26 02:05:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eyq_A TRCF, transcription-rep 100.0 1.9E-87 6.6E-92 810.2 59.1 611 14-634 530-1146(1151)
2 1gm5_A RECG; helicase, replica 100.0 5.6E-59 1.9E-63 539.1 32.0 424 28-459 302-740 (780)
3 2db3_A ATP-dependent RNA helic 100.0 3.5E-47 1.2E-51 417.3 37.9 323 74-411 62-408 (434)
4 2i4i_A ATP-dependent RNA helic 100.0 6.8E-45 2.3E-49 395.3 35.6 326 73-413 20-386 (417)
5 1xti_A Probable ATP-dependent 100.0 2.6E-44 8.8E-49 387.2 37.2 326 72-410 12-357 (391)
6 1hv8_A Putative ATP-dependent 100.0 7.1E-44 2.4E-48 379.5 36.8 323 72-411 10-346 (367)
7 2j0s_A ATP-dependent RNA helic 100.0 1.6E-44 5.5E-49 391.9 31.7 322 75-411 44-384 (410)
8 3fht_A ATP-dependent RNA helic 100.0 7.5E-44 2.6E-48 385.9 35.9 335 73-426 30-390 (412)
9 3eiq_A Eukaryotic initiation f 100.0 1.1E-44 3.8E-49 393.0 29.0 323 74-410 46-387 (414)
10 1s2m_A Putative ATP-dependent 100.0 9.8E-44 3.3E-48 384.3 36.2 327 70-411 23-366 (400)
11 3i5x_A ATP-dependent RNA helic 100.0 5.1E-44 1.7E-48 404.6 33.9 325 78-411 83-450 (563)
12 3sqw_A ATP-dependent RNA helic 100.0 1.1E-43 3.7E-48 403.5 33.7 326 77-411 31-399 (579)
13 3oiy_A Reverse gyrase helicase 100.0 7E-44 2.4E-48 388.2 30.2 308 78-407 10-362 (414)
14 3pey_A ATP-dependent RNA helic 100.0 4.8E-43 1.7E-47 376.8 36.4 326 69-410 6-356 (395)
15 2v1x_A ATP-dependent DNA helic 100.0 1.4E-43 4.9E-48 401.5 33.2 320 73-411 26-375 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 3.4E-43 1.2E-47 393.9 33.8 313 78-411 13-344 (523)
17 3fmp_B ATP-dependent RNA helic 100.0 6.6E-45 2.3E-49 404.0 15.9 320 78-411 103-447 (479)
18 2z0m_A 337AA long hypothetical 100.0 1E-42 3.6E-47 366.4 31.5 306 77-408 4-321 (337)
19 2oca_A DAR protein, ATP-depend 100.0 1.3E-45 4.5E-50 412.7 7.8 369 15-407 24-452 (510)
20 1fuu_A Yeast initiation factor 100.0 8.7E-44 3E-48 383.1 19.4 325 72-412 25-368 (394)
21 3l9o_A ATP-dependent RNA helic 100.0 5E-41 1.7E-45 403.6 28.3 310 78-410 173-597 (1108)
22 2p6r_A Afuhel308 helicase; pro 100.0 1.1E-41 3.8E-46 395.4 21.8 312 78-411 14-389 (702)
23 2zj8_A DNA helicase, putative 100.0 1.4E-41 4.7E-46 395.7 22.4 317 73-411 6-388 (720)
24 3fho_A ATP-dependent RNA helic 100.0 4.5E-41 1.5E-45 375.9 21.1 318 78-411 130-471 (508)
25 2va8_A SSO2462, SKI2-type heli 100.0 6.1E-40 2.1E-44 381.6 31.1 318 72-411 12-409 (715)
26 4a2p_A RIG-I, retinoic acid in 100.0 2.1E-40 7.2E-45 373.1 25.1 311 85-411 3-509 (556)
27 4ddu_A Reverse gyrase; topoiso 100.0 4.6E-40 1.6E-44 395.1 28.4 283 78-381 67-388 (1104)
28 2xgj_A ATP-dependent RNA helic 100.0 3.5E-39 1.2E-43 384.5 31.9 303 83-410 80-499 (1010)
29 3tbk_A RIG-I helicase domain; 100.0 8.2E-40 2.8E-44 367.7 24.6 310 87-411 2-508 (555)
30 1wp9_A ATP-dependent RNA helic 100.0 2.3E-38 8E-43 348.1 30.8 307 88-412 8-477 (494)
31 2ykg_A Probable ATP-dependent 100.0 4E-39 1.4E-43 373.5 21.9 316 81-411 5-517 (696)
32 2xau_A PRE-mRNA-splicing facto 100.0 9.7E-40 3.3E-44 380.2 15.3 411 69-509 73-535 (773)
33 4a2q_A RIG-I, retinoic acid in 100.0 2.3E-38 7.9E-43 372.3 26.6 312 84-411 243-750 (797)
34 2v6i_A RNA helicase; membrane, 100.0 1.1E-38 3.9E-43 349.1 22.2 294 111-449 2-336 (431)
35 4gl2_A Interferon-induced heli 100.0 8.1E-39 2.8E-43 371.1 22.1 308 87-410 5-519 (699)
36 4a4z_A Antiviral helicase SKI2 100.0 5.7E-38 1.9E-42 374.0 29.6 308 79-409 29-491 (997)
37 1tf5_A Preprotein translocase 100.0 5.1E-37 1.8E-41 349.8 33.6 303 87-412 81-547 (844)
38 2wv9_A Flavivirin protease NS2 100.0 4.2E-39 1.5E-43 368.5 13.8 320 89-449 215-574 (673)
39 1yks_A Genome polyprotein [con 100.0 6.9E-39 2.4E-43 351.6 14.4 290 111-459 8-339 (440)
40 2fwr_A DNA repair protein RAD2 100.0 2.5E-38 8.6E-43 350.3 17.5 299 86-420 90-464 (472)
41 1gku_B Reverse gyrase, TOP-RG; 100.0 1.4E-37 4.8E-42 373.5 20.3 278 79-380 47-352 (1054)
42 4a2w_A RIG-I, retinoic acid in 100.0 5.4E-37 1.9E-41 365.2 23.2 312 84-411 243-750 (936)
43 2fsf_A Preprotein translocase 100.0 2.6E-35 8.7E-40 335.0 31.5 305 86-412 71-585 (853)
44 2jlq_A Serine protease subunit 100.0 5.8E-37 2E-41 337.6 16.0 279 87-410 2-311 (451)
45 1nkt_A Preprotein translocase 100.0 1.6E-34 5.4E-39 328.7 34.9 307 84-412 106-619 (922)
46 4f92_B U5 small nuclear ribonu 100.0 2.1E-35 7.2E-40 366.4 29.4 317 80-410 917-1308(1724)
47 4f92_B U5 small nuclear ribonu 100.0 2E-35 6.8E-40 366.7 26.3 311 87-412 77-475 (1724)
48 3dmq_A RNA polymerase-associat 100.0 2.1E-34 7E-39 343.7 29.7 348 29-407 110-610 (968)
49 3h1t_A Type I site-specific re 100.0 2.2E-35 7.5E-40 335.9 20.4 291 88-399 177-545 (590)
50 3o8b_A HCV NS3 protease/helica 100.0 4.3E-35 1.5E-39 331.3 17.2 256 111-414 232-518 (666)
51 2z83_A Helicase/nucleoside tri 100.0 1E-34 3.6E-39 320.2 18.9 259 111-410 21-313 (459)
52 2whx_A Serine protease/ntpase/ 100.0 4.3E-35 1.5E-39 333.2 15.9 282 88-414 170-485 (618)
53 3rc3_A ATP-dependent RNA helic 100.0 4.9E-33 1.7E-37 317.7 22.9 300 78-410 117-445 (677)
54 1z63_A Helicase of the SNF2/RA 100.0 8.1E-32 2.8E-36 300.2 21.0 307 86-411 34-454 (500)
55 3jux_A Protein translocase sub 100.0 6.6E-28 2.3E-32 269.0 36.4 307 81-411 67-588 (822)
56 1z3i_X Similar to RAD54-like; 100.0 5.1E-28 1.8E-32 277.4 34.0 316 88-411 54-529 (644)
57 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.1E-28 7.1E-33 290.5 26.8 308 88-408 270-707 (1038)
58 1c4o_A DNA nucleotide excision 100.0 6E-27 2E-31 268.7 36.0 166 239-412 380-552 (664)
59 3mwy_W Chromo domain-containin 100.0 4.8E-28 1.6E-32 284.3 25.7 311 88-412 235-686 (800)
60 2d7d_A Uvrabc system protein B 100.0 3.9E-26 1.3E-30 261.8 35.6 165 239-412 386-558 (661)
61 3fe2_A Probable ATP-dependent 99.9 2.4E-25 8E-30 224.4 22.8 187 73-271 34-239 (242)
62 1t6n_A Probable ATP-dependent 99.9 6.5E-25 2.2E-29 217.5 22.8 196 62-267 8-218 (220)
63 3iuy_A Probable ATP-dependent 99.9 3.5E-25 1.2E-29 220.8 20.9 177 78-267 31-226 (228)
64 2ipc_A Preprotein translocase 99.9 4.8E-24 1.6E-28 242.0 32.5 126 84-225 74-214 (997)
65 3ly5_A ATP-dependent RNA helic 99.9 7.7E-25 2.6E-29 223.6 21.7 175 78-264 65-257 (262)
66 2pl3_A Probable ATP-dependent 99.9 1.8E-24 6.1E-29 216.9 22.6 186 71-269 28-232 (236)
67 2oxc_A Probable ATP-dependent 99.9 1E-24 3.6E-29 218.0 20.8 186 72-269 28-228 (230)
68 1vec_A ATP-dependent RNA helic 99.9 1.5E-24 5.1E-29 212.5 21.0 184 72-266 7-204 (206)
69 3bor_A Human initiation factor 99.9 7E-25 2.4E-29 220.3 18.7 187 72-269 34-234 (237)
70 1q0u_A Bstdead; DEAD protein, 99.9 9.7E-25 3.3E-29 216.3 17.8 187 72-269 8-211 (219)
71 3ber_A Probable ATP-dependent 99.9 4.6E-24 1.6E-28 216.1 22.9 188 70-269 45-247 (249)
72 3fmo_B ATP-dependent RNA helic 99.9 1.4E-24 4.8E-29 226.0 18.0 184 75-270 99-298 (300)
73 2gxq_A Heat resistant RNA depe 99.9 6.4E-24 2.2E-28 207.9 21.2 182 73-268 6-204 (207)
74 3dkp_A Probable ATP-dependent 99.9 1.7E-24 5.7E-29 218.3 17.5 183 78-271 40-242 (245)
75 1qde_A EIF4A, translation init 99.9 3.3E-24 1.1E-28 212.9 19.2 185 73-270 19-217 (224)
76 1wrb_A DJVLGB; RNA helicase, D 99.9 4E-24 1.4E-28 216.7 19.2 181 78-270 34-240 (253)
77 2hjv_A ATP-dependent RNA helic 99.9 1.2E-21 4E-26 185.4 15.8 132 277-411 10-143 (163)
78 2p6n_A ATP-dependent RNA helic 99.9 2.2E-21 7.4E-26 188.5 16.2 150 258-410 9-161 (191)
79 3eaq_A Heat resistant RNA depe 99.9 3E-21 1E-25 190.7 16.4 111 298-411 29-139 (212)
80 2rb4_A ATP-dependent RNA helic 99.9 2.6E-21 8.8E-26 185.1 14.8 132 277-411 8-148 (175)
81 1t5i_A C_terminal domain of A 99.9 3E-21 1E-25 184.3 14.2 109 299-410 30-138 (172)
82 2jgn_A DBX, DDX3, ATP-dependen 99.9 4.1E-21 1.4E-25 185.6 14.0 112 299-413 45-156 (185)
83 1fuk_A Eukaryotic initiation f 99.8 2.5E-21 8.6E-26 183.4 11.8 110 299-411 29-138 (165)
84 3i32_A Heat resistant RNA depe 99.8 5.2E-21 1.8E-25 198.4 13.2 110 299-411 27-136 (300)
85 2vl7_A XPD; helicase, unknown 99.8 2.2E-20 7.6E-25 209.8 18.1 293 87-405 5-517 (540)
86 1rif_A DAR protein, DNA helica 99.8 2.2E-20 7.6E-25 192.4 15.0 150 88-252 112-265 (282)
87 2qsr_A Transcription-repair co 99.8 2.6E-19 8.9E-24 169.5 16.7 149 489-639 8-160 (173)
88 2yjt_D ATP-dependent RNA helic 99.7 1.3E-21 4.4E-26 186.4 0.0 111 299-412 29-139 (170)
89 3b6e_A Interferon-induced heli 99.8 4E-20 1.4E-24 181.6 10.7 153 83-248 27-216 (216)
90 3llm_A ATP-dependent RNA helic 99.8 6.8E-19 2.3E-23 176.4 18.4 159 79-253 51-222 (235)
91 2fz4_A DNA repair protein RAD2 99.8 2.4E-19 8.1E-24 180.1 14.2 140 85-252 89-231 (237)
92 3crv_A XPD/RAD3 related DNA he 99.8 1.7E-16 5.9E-21 178.6 29.7 277 88-380 2-472 (551)
93 4a15_A XPD helicase, ATP-depen 99.7 6.8E-15 2.3E-19 167.3 27.2 85 88-176 2-87 (620)
94 1z5z_A Helicase of the SNF2/RA 99.6 1.2E-15 4E-20 156.1 9.6 121 289-411 101-225 (271)
95 1w36_D RECD, exodeoxyribonucle 98.5 4E-07 1.4E-11 103.3 12.0 151 78-247 137-297 (608)
96 2xzl_A ATP-dependent helicase 98.3 1.1E-05 3.9E-10 93.9 16.8 67 88-161 359-426 (802)
97 4b3f_X DNA-binding protein smu 98.2 9.4E-06 3.2E-10 92.8 15.6 68 88-161 188-255 (646)
98 3upu_A ATP-dependent DNA helic 98.2 9.9E-06 3.4E-10 88.6 14.8 142 78-244 14-160 (459)
99 2gk6_A Regulator of nonsense t 98.2 1.8E-05 6.3E-10 89.9 16.9 67 88-161 179-246 (624)
100 3e1s_A Exodeoxyribonuclease V, 98.2 1.8E-05 6.2E-10 88.9 15.7 124 87-244 187-311 (574)
101 2wjy_A Regulator of nonsense t 98.1 4.4E-05 1.5E-09 88.9 16.8 68 87-161 354-422 (800)
102 3lfu_A DNA helicase II; SF1 he 98.1 6.6E-05 2.3E-09 85.5 17.9 80 88-176 8-92 (647)
103 2j9r_A Thymidine kinase; TK1, 97.5 0.00031 1.1E-08 68.2 10.0 108 111-248 28-136 (214)
104 2orw_A Thymidine kinase; TMTK, 97.5 0.00035 1.2E-08 66.4 9.9 104 111-243 3-107 (184)
105 1xx6_A Thymidine kinase; NESG, 97.5 0.00037 1.3E-08 66.7 9.4 39 111-149 8-46 (191)
106 2b8t_A Thymidine kinase; deoxy 97.1 0.00041 1.4E-08 68.1 4.8 40 110-149 11-50 (223)
107 3e2i_A Thymidine kinase; Zn-bi 97.0 0.0022 7.4E-08 62.2 9.6 105 110-243 27-132 (219)
108 1a5t_A Delta prime, HOLB; zinc 97.0 0.0035 1.2E-07 65.2 11.7 46 90-135 3-48 (334)
109 2o0j_A Terminase, DNA packagin 96.9 0.012 4E-07 62.4 15.0 75 86-167 160-236 (385)
110 1w4r_A Thymidine kinase; type 96.9 0.002 6.7E-08 61.6 7.4 38 111-148 20-57 (195)
111 3cpe_A Terminase, DNA packagin 96.7 0.026 8.8E-07 63.5 16.2 123 86-227 160-287 (592)
112 3ec2_A DNA replication protein 96.6 0.017 5.7E-07 54.0 12.3 65 91-156 16-83 (180)
113 1uaa_A REP helicase, protein ( 96.6 0.0025 8.7E-08 72.9 7.3 80 89-177 2-87 (673)
114 2hjv_A ATP-dependent RNA helic 96.6 0.019 6.4E-07 52.9 11.9 92 122-221 20-111 (163)
115 2orv_A Thymidine kinase; TP4A 96.5 0.008 2.7E-07 58.8 9.2 39 111-149 19-57 (234)
116 1fuk_A Eukaryotic initiation f 96.5 0.019 6.6E-07 52.9 11.4 90 124-221 17-106 (165)
117 3te6_A Regulatory protein SIR3 96.4 0.013 4.4E-07 60.5 10.8 39 93-131 27-65 (318)
118 3vkw_A Replicase large subunit 96.4 0.0047 1.6E-07 66.4 7.5 102 112-245 162-266 (446)
119 1gm5_A RECG; helicase, replica 96.4 0.0096 3.3E-07 69.0 10.2 94 292-385 409-505 (780)
120 2jgn_A DBX, DDX3, ATP-dependen 96.3 0.011 3.7E-07 56.0 8.5 92 121-219 29-120 (185)
121 1pjr_A PCRA; DNA repair, DNA r 96.3 0.0074 2.5E-07 69.6 8.7 80 88-176 10-94 (724)
122 1l8q_A Chromosomal replication 96.3 0.045 1.5E-06 56.2 13.8 38 110-147 36-73 (324)
123 1fnn_A CDC6P, cell division co 96.3 0.063 2.2E-06 56.2 15.2 55 91-146 22-80 (389)
124 1t5i_A C_terminal domain of A 96.2 0.02 7E-07 53.3 10.0 93 122-222 16-108 (172)
125 2rb4_A ATP-dependent RNA helic 96.2 0.014 4.8E-07 54.4 8.7 76 138-219 33-108 (175)
126 3hgt_A HDA1 complex subunit 3; 96.2 0.015 5E-07 59.9 9.2 116 289-412 113-239 (328)
127 2p65_A Hypothetical protein PF 96.1 0.021 7.1E-07 52.9 9.6 37 95-132 28-64 (187)
128 2p6n_A ATP-dependent RNA helic 96.1 0.023 7.9E-07 54.0 10.0 75 139-219 54-128 (191)
129 2qby_B CDC6 homolog 3, cell di 96.1 0.031 1.1E-06 58.5 11.8 41 91-131 25-65 (384)
130 3eaq_A Heat resistant RNA depe 96.1 0.037 1.3E-06 53.4 11.3 92 120-219 14-105 (212)
131 1c4o_A DNA nucleotide excision 96.1 0.035 1.2E-06 63.3 12.7 99 123-227 423-521 (664)
132 3bos_A Putative DNA replicatio 96.0 0.015 5.1E-07 56.4 8.3 50 95-145 37-86 (242)
133 2d7d_A Uvrabc system protein B 96.0 0.035 1.2E-06 63.2 12.2 100 122-227 428-527 (661)
134 3u4q_A ATP-dependent helicase/ 95.9 0.012 3.9E-07 72.1 8.2 68 88-164 9-82 (1232)
135 2chg_A Replication factor C sm 95.8 0.055 1.9E-06 51.3 11.3 21 110-130 37-57 (226)
136 2v1u_A Cell division control p 95.8 0.1 3.5E-06 54.4 14.1 41 91-131 24-64 (387)
137 3u61_B DNA polymerase accessor 95.7 0.037 1.3E-06 56.8 10.2 34 212-245 104-142 (324)
138 3kl4_A SRP54, signal recogniti 95.7 0.075 2.6E-06 57.1 12.6 117 111-249 97-223 (433)
139 1njg_A DNA polymerase III subu 95.5 0.059 2E-06 51.7 10.3 21 111-131 45-65 (250)
140 2gno_A DNA polymerase III, gam 95.5 0.069 2.4E-06 54.7 11.1 36 94-130 2-37 (305)
141 2zpa_A Uncharacterized protein 95.3 0.029 9.9E-07 63.3 8.0 114 89-249 175-288 (671)
142 2eyq_A TRCF, transcription-rep 95.2 0.072 2.5E-06 64.5 11.8 96 130-229 803-898 (1151)
143 3n70_A Transport activator; si 95.2 0.04 1.4E-06 49.6 7.4 21 109-129 22-42 (145)
144 2i4i_A ATP-dependent RNA helic 95.2 0.063 2.2E-06 56.7 10.0 84 130-219 267-350 (417)
145 1d2n_A N-ethylmaleimide-sensit 95.2 0.12 4E-06 51.6 11.5 23 109-131 62-84 (272)
146 3pfi_A Holliday junction ATP-d 95.2 0.18 6.2E-06 51.8 13.2 22 109-130 53-74 (338)
147 2bjv_A PSP operon transcriptio 95.1 0.15 5.3E-06 50.5 12.2 20 110-129 28-47 (265)
148 3i32_A Heat resistant RNA depe 95.0 0.082 2.8E-06 54.0 9.9 91 121-219 12-102 (300)
149 3syl_A Protein CBBX; photosynt 95.0 0.16 5.6E-06 51.3 12.2 23 109-131 65-87 (309)
150 1g5t_A COB(I)alamin adenosyltr 95.0 0.061 2.1E-06 51.3 8.2 39 111-149 28-66 (196)
151 3i5x_A ATP-dependent RNA helic 95.0 0.21 7E-06 55.4 13.9 83 137-222 337-419 (563)
152 2z4s_A Chromosomal replication 94.9 0.14 4.9E-06 55.1 12.0 37 111-147 130-168 (440)
153 3pvs_A Replication-associated 94.9 0.017 5.7E-07 62.6 4.5 20 110-129 49-68 (447)
154 2kjq_A DNAA-related protein; s 94.9 0.038 1.3E-06 50.3 6.2 21 110-130 35-55 (149)
155 3co5_A Putative two-component 94.9 0.014 4.8E-07 52.6 3.3 19 110-128 26-44 (143)
156 1jr3_A DNA polymerase III subu 94.8 0.092 3.2E-06 54.6 9.9 37 94-130 21-57 (373)
157 1wp9_A ATP-dependent RNA helic 94.7 0.14 4.7E-06 54.7 11.0 98 120-223 340-447 (494)
158 3sqw_A ATP-dependent RNA helic 94.5 0.29 1E-05 54.5 13.5 84 137-223 286-369 (579)
159 3h4m_A Proteasome-activating n 94.5 0.41 1.4E-05 47.8 13.4 21 109-129 49-69 (285)
160 1hv8_A Putative ATP-dependent 94.4 0.13 4.3E-06 53.1 9.6 78 138-221 237-314 (367)
161 1xti_A Probable ATP-dependent 94.3 0.12 4E-06 54.0 9.2 80 138-223 249-328 (391)
162 3fht_A ATP-dependent RNA helic 94.2 0.25 8.6E-06 51.8 11.8 76 138-219 265-340 (412)
163 2oca_A DAR protein, ATP-depend 94.2 0.22 7.6E-06 54.4 11.7 85 135-224 343-427 (510)
164 1iqp_A RFCS; clamp loader, ext 94.1 0.25 8.5E-06 50.1 11.1 36 94-130 30-65 (327)
165 2qby_A CDC6 homolog 1, cell di 94.1 0.31 1.1E-05 50.5 11.9 40 91-130 25-64 (386)
166 3pey_A ATP-dependent RNA helic 94.0 0.15 5.2E-06 53.0 9.5 81 138-224 242-322 (395)
167 1ojl_A Transcriptional regulat 94.0 0.22 7.4E-06 50.9 10.3 20 109-128 23-42 (304)
168 1s2m_A Putative ATP-dependent 94.0 0.16 5.3E-06 53.4 9.4 77 138-220 257-333 (400)
169 2w58_A DNAI, primosome compone 93.9 0.13 4.6E-06 48.5 8.0 55 91-145 31-88 (202)
170 3eie_A Vacuolar protein sortin 93.9 0.17 5.7E-06 52.0 9.2 20 111-130 51-70 (322)
171 4fcw_A Chaperone protein CLPB; 93.9 0.074 2.5E-06 54.0 6.4 19 112-130 48-66 (311)
172 2qp9_X Vacuolar protein sortin 93.8 0.43 1.5E-05 49.8 12.3 21 111-131 84-104 (355)
173 1sxj_C Activator 1 40 kDa subu 93.7 0.21 7E-06 51.7 9.5 38 94-132 30-67 (340)
174 3pxi_A Negative regulator of g 93.6 1.4 4.7E-05 50.8 17.3 19 113-131 523-541 (758)
175 3hjh_A Transcription-repair-co 93.6 0.24 8.3E-06 54.0 10.3 93 111-210 14-118 (483)
176 3dm5_A SRP54, signal recogniti 93.6 0.22 7.4E-06 53.6 9.7 51 111-161 100-152 (443)
177 2yjt_D ATP-dependent RNA helic 92.7 0.013 4.3E-07 54.5 0.0 77 138-220 29-105 (170)
178 4b4t_J 26S protease regulatory 93.6 0.95 3.3E-05 47.9 14.4 24 108-131 179-202 (405)
179 2l8b_A Protein TRAI, DNA helic 93.5 0.076 2.6E-06 49.8 5.1 122 89-248 34-158 (189)
180 1jbk_A CLPB protein; beta barr 93.4 1.2 4.2E-05 40.5 13.6 35 97-132 30-64 (195)
181 1sxj_E Activator 1 40 kDa subu 93.4 0.28 9.7E-06 50.6 10.0 36 94-130 19-55 (354)
182 2j0s_A ATP-dependent RNA helic 93.3 0.23 7.7E-06 52.4 9.3 77 138-220 275-351 (410)
183 2v1x_A ATP-dependent DNA helic 93.3 0.29 1E-05 54.8 10.5 76 138-219 266-341 (591)
184 2chq_A Replication factor C sm 93.3 0.24 8.2E-06 50.0 9.1 37 94-131 22-58 (319)
185 2db3_A ATP-dependent RNA helic 93.1 0.3 1E-05 52.4 9.9 75 139-219 300-374 (434)
186 1oyw_A RECQ helicase, ATP-depe 93.0 0.38 1.3E-05 53.0 10.9 76 138-219 235-310 (523)
187 3vfd_A Spastin; ATPase, microt 93.0 0.42 1.4E-05 50.4 10.8 20 111-130 148-167 (389)
188 1z5z_A Helicase of the SNF2/RA 93.0 0.48 1.6E-05 47.4 10.6 97 119-219 92-189 (271)
189 1hqc_A RUVB; extended AAA-ATPa 93.0 0.57 2E-05 47.5 11.4 21 110-130 37-57 (324)
190 3oiy_A Reverse gyrase helicase 92.9 0.21 7.3E-06 52.8 8.4 82 298-379 62-148 (414)
191 1sxj_D Activator 1 41 kDa subu 92.9 0.32 1.1E-05 50.0 9.4 19 112-130 59-77 (353)
192 3cf0_A Transitional endoplasmi 92.8 1.3 4.3E-05 44.9 13.7 22 109-130 47-68 (301)
193 1sxj_B Activator 1 37 kDa subu 92.8 0.24 8.3E-06 50.1 8.4 37 94-131 26-62 (323)
194 2zr9_A Protein RECA, recombina 92.8 0.19 6.5E-06 52.4 7.5 49 97-148 48-98 (349)
195 1sxj_A Activator 1 95 kDa subu 92.6 0.35 1.2E-05 53.2 9.8 33 111-146 77-109 (516)
196 1u94_A RECA protein, recombina 92.5 0.17 5.8E-06 53.0 6.7 40 110-149 62-101 (356)
197 1xp8_A RECA protein, recombina 92.4 0.21 7.1E-06 52.5 7.3 50 97-149 61-112 (366)
198 3hu3_A Transitional endoplasmi 92.1 0.8 2.7E-05 50.0 11.8 21 109-129 236-256 (489)
199 1qvr_A CLPB protein; coiled co 92.0 0.37 1.3E-05 56.4 9.5 41 93-134 174-214 (854)
200 2ffh_A Protein (FFH); SRP54, s 91.9 0.62 2.1E-05 49.8 10.4 50 111-160 98-149 (425)
201 2xxa_A Signal recognition part 91.6 0.6 2.1E-05 50.1 9.9 45 111-155 100-147 (433)
202 3hr8_A Protein RECA; alpha and 91.6 0.29 1E-05 51.1 7.3 44 110-153 60-103 (356)
203 3io5_A Recombination and repai 91.5 0.24 8.2E-06 50.8 6.3 41 113-153 30-72 (333)
204 2j37_W Signal recognition part 91.2 8.6 0.00029 41.9 18.6 37 111-147 101-137 (504)
205 2z43_A DNA repair and recombin 91.1 0.33 1.1E-05 49.9 6.9 50 97-149 95-151 (324)
206 2qgz_A Helicase loader, putati 91.0 0.44 1.5E-05 48.7 7.7 54 93-146 132-188 (308)
207 4ddu_A Reverse gyrase; topoiso 90.7 0.44 1.5E-05 57.4 8.4 83 296-379 117-205 (1104)
208 2dr3_A UPF0273 protein PH0284; 90.3 0.35 1.2E-05 46.8 6.0 50 110-160 22-71 (247)
209 4a2p_A RIG-I, retinoic acid in 90.2 0.33 1.1E-05 53.2 6.4 99 120-220 369-478 (556)
210 1r6b_X CLPA protein; AAA+, N-t 90.2 0.89 3.1E-05 52.4 10.3 37 94-131 191-227 (758)
211 2r6a_A DNAB helicase, replicat 90.1 0.83 2.8E-05 49.3 9.3 59 97-159 192-251 (454)
212 1w5s_A Origin recognition comp 89.9 0.88 3E-05 47.7 9.3 41 91-131 27-72 (412)
213 1vma_A Cell division protein F 89.8 1.6 5.5E-05 44.5 10.7 36 111-146 104-139 (306)
214 3eiq_A Eukaryotic initiation f 89.8 0.24 8.3E-06 52.1 4.7 76 138-219 279-354 (414)
215 3tbk_A RIG-I helicase domain; 89.8 0.6 2.1E-05 51.0 8.1 97 121-219 369-476 (555)
216 2q6t_A DNAB replication FORK h 89.6 1.1 3.7E-05 48.2 9.7 61 97-161 189-250 (444)
217 3cmu_A Protein RECA, recombina 89.6 0.45 1.5E-05 60.0 7.4 46 109-154 1425-1470(2050)
218 2gxq_A Heat resistant RNA depe 88.8 0.9 3.1E-05 42.6 7.5 78 299-380 71-154 (207)
219 2zj8_A DNA helicase, putative 88.8 0.91 3.1E-05 52.0 8.9 87 133-221 231-345 (720)
220 2va8_A SSO2462, SKI2-type heli 88.8 1.8 6E-05 49.4 11.3 87 132-219 245-362 (715)
221 1v5w_A DMC1, meiotic recombina 88.6 0.86 3E-05 47.2 7.8 51 97-149 110-166 (343)
222 2ce7_A Cell division protein F 88.5 2.3 7.8E-05 46.1 11.3 19 111-129 49-67 (476)
223 2z0m_A 337AA long hypothetical 88.3 0.79 2.7E-05 46.3 7.2 74 138-221 219-292 (337)
224 2xau_A PRE-mRNA-splicing facto 88.3 0.69 2.4E-05 53.5 7.5 81 138-219 302-393 (773)
225 1z63_A Helicase of the SNF2/RA 88.3 1.2 4.2E-05 48.2 9.1 100 120-223 322-422 (500)
226 3dmq_A RNA polymerase-associat 88.3 0.89 3E-05 54.0 8.5 97 120-223 486-584 (968)
227 1n0w_A DNA repair protein RAD5 87.9 0.8 2.7E-05 44.2 6.6 38 110-147 23-66 (243)
228 3e70_C DPA, signal recognition 87.6 3.3 0.00011 42.5 11.4 37 109-145 127-163 (328)
229 1yks_A Genome polyprotein [con 87.6 0.4 1.4E-05 51.5 4.6 71 137-218 175-245 (440)
230 2zts_A Putative uncharacterize 87.4 0.4 1.4E-05 46.5 4.1 50 110-160 29-79 (251)
231 3mwy_W Chromo domain-containin 87.4 3.2 0.00011 48.0 12.4 94 121-219 554-649 (800)
232 3bh0_A DNAB-like replicative h 87.3 1.2 4E-05 45.6 7.7 62 97-162 57-118 (315)
233 4a2q_A RIG-I, retinoic acid in 87.0 0.85 2.9E-05 52.9 7.3 99 121-221 611-720 (797)
234 2p6r_A Afuhel308 helicase; pro 86.9 1.9 6.6E-05 49.0 10.1 87 132-219 235-346 (702)
235 3fmp_B ATP-dependent RNA helic 86.9 0.12 4.2E-06 56.0 0.0 74 139-218 333-406 (479)
236 1j8m_F SRP54, signal recogniti 86.4 2.3 7.8E-05 43.1 9.2 36 111-146 98-133 (297)
237 2i1q_A DNA repair and recombin 86.2 0.96 3.3E-05 46.2 6.3 60 97-159 86-163 (322)
238 1e9r_A Conjugal transfer prote 86.1 0.76 2.6E-05 49.1 5.8 43 111-153 53-95 (437)
239 4gl2_A Interferon-induced heli 86.0 0.48 1.6E-05 53.9 4.3 79 139-219 400-488 (699)
240 1ls1_A Signal recognition part 85.8 3.5 0.00012 41.6 10.2 36 111-146 98-133 (295)
241 1t6n_A Probable ATP-dependent 85.5 2.4 8.1E-05 40.2 8.5 79 300-381 82-169 (220)
242 2wv9_A Flavivirin protease NS2 85.4 1.1 3.7E-05 51.0 6.8 70 138-218 409-478 (673)
243 2ykg_A Probable ATP-dependent 84.7 1.1 3.8E-05 50.8 6.6 98 121-220 378-486 (696)
244 2w0m_A SSO2452; RECA, SSPF, un 84.3 0.99 3.4E-05 43.0 5.1 38 110-147 22-59 (235)
245 1ofh_A ATP-dependent HSL prote 84.2 1.2 4.2E-05 44.6 5.9 21 110-130 49-69 (310)
246 4a2w_A RIG-I, retinoic acid in 84.1 1.3 4.5E-05 52.3 7.0 100 121-222 611-721 (936)
247 3cmw_A Protein RECA, recombina 83.7 1.7 5.8E-05 54.1 7.9 47 109-155 1429-1475(1706)
248 2v6i_A RNA helicase; membrane, 83.7 1.9 6.6E-05 46.0 7.6 65 138-212 170-234 (431)
249 2px0_A Flagellar biosynthesis 83.5 1.3 4.4E-05 44.9 5.7 37 110-146 104-141 (296)
250 1p9r_A General secretion pathw 83.4 1.4 4.9E-05 46.9 6.3 51 89-145 150-201 (418)
251 2r8r_A Sensor protein; KDPD, P 83.0 1.4 4.8E-05 42.8 5.5 35 111-145 6-40 (228)
252 4a74_A DNA repair and recombin 82.7 1.3 4.3E-05 42.3 5.1 39 110-148 24-68 (231)
253 1fuu_A Yeast initiation factor 82.0 0.27 9.3E-06 51.2 0.0 75 139-219 259-333 (394)
254 3fho_A ATP-dependent RNA helic 81.7 0.27 9.3E-06 53.9 -0.2 78 138-221 356-433 (508)
255 2cvh_A DNA repair and recombin 81.6 1.4 4.7E-05 41.7 4.9 35 110-147 19-53 (220)
256 2yvu_A Probable adenylyl-sulfa 81.6 1.6 5.6E-05 40.3 5.3 37 110-146 12-48 (186)
257 2oxc_A Probable ATP-dependent 81.5 2.6 8.8E-05 40.4 6.9 75 300-379 92-175 (230)
258 4b4t_L 26S protease subunit RP 81.4 2.2 7.6E-05 45.6 6.9 37 108-147 212-248 (437)
259 4ag6_A VIRB4 ATPase, type IV s 81.4 1.6 5.3E-05 45.9 5.6 40 111-150 35-74 (392)
260 3fe2_A Probable ATP-dependent 81.3 3.3 0.00011 40.0 7.6 78 299-380 101-186 (242)
261 3rc3_A ATP-dependent RNA helic 81.0 4.4 0.00015 45.9 9.4 77 142-225 323-401 (677)
262 4b4t_M 26S protease regulatory 80.9 1.9 6.6E-05 46.1 6.2 37 108-147 212-248 (434)
263 2fwr_A DNA repair protein RAD2 80.7 0.69 2.4E-05 49.8 2.7 76 137-223 347-422 (472)
264 1vec_A ATP-dependent RNA helic 80.6 4 0.00014 38.0 7.7 77 300-380 71-156 (206)
265 3uk6_A RUVB-like 2; hexameric 80.5 2.8 9.4E-05 43.2 7.1 41 91-131 49-90 (368)
266 2jlq_A Serine protease subunit 80.5 2.6 8.7E-05 45.3 7.1 70 138-218 187-256 (451)
267 2eyu_A Twitching motility prot 80.3 1.9 6.6E-05 42.7 5.6 20 109-128 23-42 (261)
268 3foz_A TRNA delta(2)-isopenten 80.3 0.95 3.3E-05 46.2 3.3 22 111-132 10-31 (316)
269 3bgw_A DNAB-like replicative h 80.3 1.8 6.3E-05 46.4 5.8 61 97-161 186-246 (444)
270 1gku_B Reverse gyrase, TOP-RG; 80.2 2.1 7.2E-05 51.3 6.8 85 294-380 93-185 (1054)
271 3lda_A DNA repair protein RAD5 80.2 1.8 6.3E-05 45.8 5.6 39 110-148 177-221 (400)
272 3a8t_A Adenylate isopentenyltr 80.0 0.94 3.2E-05 46.8 3.2 20 111-130 40-59 (339)
273 2pl3_A Probable ATP-dependent 79.4 3.6 0.00012 39.4 7.1 77 299-380 96-181 (236)
274 2p5t_B PEZT; postsegregational 79.4 9.6 0.00033 37.1 10.4 23 108-130 29-51 (253)
275 3bor_A Human initiation factor 79.4 2.7 9.3E-05 40.5 6.3 79 299-380 97-183 (237)
276 3hws_A ATP-dependent CLP prote 79.3 1.6 5.4E-05 45.3 4.8 21 110-130 50-70 (363)
277 2qz4_A Paraplegin; AAA+, SPG7, 79.3 2.2 7.5E-05 41.5 5.6 21 110-130 38-58 (262)
278 3iuy_A Probable ATP-dependent 79.3 2.6 8.8E-05 40.2 6.0 78 299-380 93-177 (228)
279 4b4t_K 26S protease regulatory 79.2 2.9 9.9E-05 44.6 6.8 23 109-131 204-226 (428)
280 1ny5_A Transcriptional regulat 79.1 6 0.0002 41.5 9.3 20 109-128 158-177 (387)
281 3lw7_A Adenylate kinase relate 78.5 0.94 3.2E-05 40.9 2.4 20 112-131 2-21 (179)
282 1qhx_A CPT, protein (chloramph 78.1 1 3.5E-05 41.2 2.6 20 111-130 3-22 (178)
283 2oap_1 GSPE-2, type II secreti 78.1 2 6.7E-05 47.1 5.2 18 111-128 260-277 (511)
284 2whx_A Serine protease/ntpase/ 78.1 4.2 0.00014 45.6 8.0 70 138-218 354-423 (618)
285 4a1f_A DNAB helicase, replicat 78.1 2.7 9.3E-05 43.4 6.0 60 98-161 36-95 (338)
286 1zu4_A FTSY; GTPase, signal re 77.9 2.2 7.6E-05 43.6 5.3 36 111-146 105-140 (320)
287 1gvn_B Zeta; postsegregational 77.6 1.4 4.9E-05 44.3 3.7 21 110-130 32-52 (287)
288 3t15_A Ribulose bisphosphate c 77.5 2 6.8E-05 43.3 4.8 34 110-146 35-68 (293)
289 3trf_A Shikimate kinase, SK; a 77.2 1.4 4.8E-05 40.6 3.3 22 111-132 5-26 (185)
290 1nks_A Adenylate kinase; therm 77.1 3.2 0.00011 38.1 5.8 38 113-151 3-40 (194)
291 2qmh_A HPR kinase/phosphorylas 76.7 1.3 4.5E-05 42.1 2.9 20 111-130 34-53 (205)
292 1y63_A LMAJ004144AAA protein; 76.7 1.3 4.3E-05 41.2 2.8 22 109-130 8-29 (184)
293 1rj9_A FTSY, signal recognitio 76.5 2.8 9.7E-05 42.5 5.6 37 110-146 101-137 (304)
294 3ly5_A ATP-dependent RNA helic 76.4 12 0.00041 36.6 10.1 78 299-380 125-211 (262)
295 4b4t_H 26S protease regulatory 76.3 3.4 0.00012 44.4 6.3 22 109-130 241-262 (467)
296 1cr0_A DNA primase/helicase; R 76.2 3 0.0001 41.7 5.7 48 97-147 24-72 (296)
297 2r2a_A Uncharacterized protein 76.2 1.6 5.6E-05 41.4 3.4 25 111-135 5-29 (199)
298 3vaa_A Shikimate kinase, SK; s 76.0 1.6 5.6E-05 40.9 3.4 22 111-132 25-46 (199)
299 1z3i_X Similar to RAD54-like; 76.0 17 0.00057 40.8 12.4 97 120-222 396-496 (644)
300 2ehv_A Hypothetical protein PH 75.7 2.5 8.5E-05 40.7 4.8 37 110-146 29-66 (251)
301 3ber_A Probable ATP-dependent 75.4 4.8 0.00016 39.2 6.8 77 300-380 111-196 (249)
302 3dzd_A Transcriptional regulat 75.4 2.7 9.2E-05 43.9 5.2 19 111-129 152-170 (368)
303 2v3c_C SRP54, signal recogniti 75.2 1.9 6.3E-05 46.2 3.9 36 111-146 99-134 (432)
304 3d8b_A Fidgetin-like protein 1 75.2 3.7 0.00013 42.5 6.2 21 110-130 116-136 (357)
305 3tau_A Guanylate kinase, GMP k 75.1 1.9 6.4E-05 40.9 3.6 21 110-130 7-27 (208)
306 2r44_A Uncharacterized protein 75.0 1.5 5.3E-05 44.6 3.2 33 94-129 32-64 (331)
307 2ewv_A Twitching motility prot 74.9 2.5 8.6E-05 44.2 4.8 20 109-128 134-153 (372)
308 1xjc_A MOBB protein homolog; s 74.8 3.8 0.00013 37.8 5.5 34 113-146 6-39 (169)
309 1aky_A Adenylate kinase; ATP:A 74.8 1.8 6.2E-05 41.2 3.4 23 110-132 3-25 (220)
310 3exa_A TRNA delta(2)-isopenten 74.8 1.6 5.4E-05 44.7 3.0 21 112-132 4-24 (322)
311 1wrb_A DJVLGB; RNA helicase, D 74.7 5.5 0.00019 38.6 7.0 78 299-380 99-184 (253)
312 1tue_A Replication protein E1; 74.5 2.6 8.8E-05 40.3 4.3 33 95-130 45-77 (212)
313 1kht_A Adenylate kinase; phosp 74.5 1.5 5E-05 40.4 2.6 22 111-132 3-24 (192)
314 3a4m_A L-seryl-tRNA(SEC) kinas 74.3 3.2 0.00011 40.8 5.2 35 111-145 4-38 (260)
315 2ze6_A Isopentenyl transferase 74.3 1.6 5.5E-05 42.9 3.0 18 113-130 3-20 (253)
316 1kgd_A CASK, peripheral plasma 74.3 2 6.7E-05 39.7 3.4 20 111-130 5-24 (180)
317 1zd8_A GTP:AMP phosphotransfer 74.2 1.8 6.2E-05 41.5 3.3 22 110-131 6-27 (227)
318 2cdn_A Adenylate kinase; phosp 74.1 1.7 5.7E-05 40.8 2.9 23 109-131 18-40 (201)
319 3cf2_A TER ATPase, transitiona 74.1 11 0.00037 43.6 10.1 100 109-251 509-626 (806)
320 2z83_A Helicase/nucleoside tri 73.8 1.6 5.3E-05 47.1 3.0 70 138-218 189-258 (459)
321 4b4t_I 26S protease regulatory 73.8 4.1 0.00014 43.4 6.1 23 109-131 214-236 (437)
322 1lv7_A FTSH; alpha/beta domain 73.8 1.6 5.6E-05 42.6 2.9 19 111-129 45-63 (257)
323 3sr0_A Adenylate kinase; phosp 73.6 2.2 7.5E-05 40.7 3.6 23 112-134 1-23 (206)
324 2j41_A Guanylate kinase; GMP, 73.5 1.7 6E-05 40.6 2.9 20 110-129 5-24 (207)
325 4eun_A Thermoresistant glucoki 73.4 1.7 5.7E-05 40.9 2.7 22 109-130 27-48 (200)
326 3fb4_A Adenylate kinase; psych 73.4 1.5 5.2E-05 41.5 2.4 20 112-131 1-20 (216)
327 3uie_A Adenylyl-sulfate kinase 73.3 3.9 0.00013 38.2 5.3 23 109-131 23-45 (200)
328 2rhm_A Putative kinase; P-loop 73.3 1.5 5.3E-05 40.4 2.4 21 111-131 5-25 (193)
329 1zp6_A Hypothetical protein AT 73.3 1.6 5.5E-05 40.3 2.6 21 109-129 7-27 (191)
330 3b9q_A Chloroplast SRP recepto 73.3 3.5 0.00012 41.8 5.3 37 110-146 99-135 (302)
331 1ly1_A Polynucleotide kinase; 73.1 1.5 5E-05 40.0 2.2 19 112-130 3-21 (181)
332 2pez_A Bifunctional 3'-phospho 73.0 4 0.00014 37.3 5.2 20 110-129 4-23 (179)
333 1kag_A SKI, shikimate kinase I 73.0 1.7 5.8E-05 39.4 2.6 19 111-129 4-22 (173)
334 3dl0_A Adenylate kinase; phosp 72.7 1.6 5.5E-05 41.4 2.4 20 112-131 1-20 (216)
335 3nbx_X ATPase RAVA; AAA+ ATPas 72.7 1.9 6.5E-05 47.1 3.3 19 111-129 41-59 (500)
336 3crm_A TRNA delta(2)-isopenten 72.6 1.8 6.2E-05 44.4 2.9 20 112-131 6-25 (323)
337 1nlf_A Regulatory protein REPA 72.6 6 0.00021 39.1 6.8 25 110-134 29-53 (279)
338 3b9p_A CG5977-PA, isoform A; A 72.6 2.2 7.6E-05 42.6 3.6 21 110-130 53-73 (297)
339 3jvv_A Twitching mobility prot 72.5 3.2 0.00011 43.1 4.9 18 111-128 123-140 (356)
340 3kb2_A SPBC2 prophage-derived 72.3 1.7 5.8E-05 39.2 2.4 18 113-130 3-20 (173)
341 2c9o_A RUVB-like 1; hexameric 72.1 4 0.00014 43.8 5.7 21 110-130 62-82 (456)
342 3iij_A Coilin-interacting nucl 71.9 2.6 8.8E-05 38.6 3.6 21 111-131 11-31 (180)
343 1m7g_A Adenylylsulfate kinase; 71.8 3.1 0.0001 39.4 4.2 38 109-146 23-61 (211)
344 1nn5_A Similar to deoxythymidy 71.8 5 0.00017 37.5 5.7 34 110-143 8-41 (215)
345 2qor_A Guanylate kinase; phosp 71.5 2.5 8.4E-05 39.8 3.4 21 110-130 11-31 (204)
346 3pxg_A Negative regulator of g 71.5 3.3 0.00011 44.7 4.8 38 93-131 184-221 (468)
347 1zak_A Adenylate kinase; ATP:A 71.3 2.5 8.7E-05 40.2 3.5 23 110-132 4-26 (222)
348 3cm0_A Adenylate kinase; ATP-b 71.1 1.9 6.6E-05 39.6 2.5 21 111-131 4-24 (186)
349 2xgj_A ATP-dependent RNA helic 70.9 10 0.00034 45.1 9.2 85 138-225 342-461 (1010)
350 1tev_A UMP-CMP kinase; ploop, 70.8 1.8 6.1E-05 39.9 2.2 20 111-130 3-22 (196)
351 1q57_A DNA primase/helicase; d 70.7 2.9 0.0001 45.5 4.3 51 110-161 241-292 (503)
352 3h1t_A Type I site-specific re 70.7 9.7 0.00033 42.1 8.6 86 137-223 437-527 (590)
353 1rz3_A Hypothetical protein rb 70.3 4.8 0.00016 37.7 5.2 36 110-145 21-56 (201)
354 2pt5_A Shikimate kinase, SK; a 70.2 2 6.9E-05 38.7 2.4 20 112-131 1-20 (168)
355 3t61_A Gluconokinase; PSI-biol 70.2 2.4 8.2E-05 39.7 3.0 20 111-130 18-37 (202)
356 1lvg_A Guanylate kinase, GMP k 70.1 2 6.9E-05 40.4 2.5 18 111-128 4-21 (198)
357 3d3q_A TRNA delta(2)-isopenten 70.1 2.3 7.8E-05 44.0 3.0 19 113-131 9-27 (340)
358 2v54_A DTMP kinase, thymidylat 70.0 2.3 7.9E-05 39.6 2.9 21 110-130 3-23 (204)
359 1xwi_A SKD1 protein; VPS4B, AA 69.9 2.7 9.3E-05 42.9 3.6 20 111-130 45-64 (322)
360 1knq_A Gluconate kinase; ALFA/ 69.8 2.2 7.4E-05 38.9 2.5 20 111-130 8-27 (175)
361 1w36_B RECB, exodeoxyribonucle 69.7 7.9 0.00027 46.9 8.1 54 112-165 17-82 (1180)
362 2og2_A Putative signal recogni 69.6 4.6 0.00016 42.0 5.2 36 111-146 157-192 (359)
363 1odf_A YGR205W, hypothetical 3 69.5 4.1 0.00014 41.0 4.7 19 110-128 30-48 (290)
364 2pbr_A DTMP kinase, thymidylat 69.4 5.5 0.00019 36.5 5.3 32 113-144 2-33 (195)
365 2c95_A Adenylate kinase 1; tra 69.4 3 0.0001 38.5 3.5 21 111-131 9-29 (196)
366 1qde_A EIF4A, translation init 69.3 4.6 0.00016 38.2 4.9 76 300-380 82-165 (224)
367 3tr0_A Guanylate kinase, GMP k 69.2 3.1 0.00011 38.8 3.6 19 111-129 7-25 (205)
368 3u4q_B ATP-dependent helicase/ 68.8 3.9 0.00013 49.5 5.2 49 114-163 4-55 (1166)
369 1c9k_A COBU, adenosylcobinamid 68.6 2.6 8.8E-05 39.4 2.8 34 114-151 2-35 (180)
370 1um8_A ATP-dependent CLP prote 68.6 3.1 0.0001 43.3 3.7 21 110-130 71-91 (376)
371 2z0h_A DTMP kinase, thymidylat 68.3 5.9 0.0002 36.4 5.3 30 114-143 3-32 (197)
372 2iyv_A Shikimate kinase, SK; t 68.2 2.5 8.5E-05 38.8 2.6 20 112-131 3-22 (184)
373 3pxi_A Negative regulator of g 68.2 3.9 0.00013 47.0 4.8 38 93-131 184-221 (758)
374 3tlx_A Adenylate kinase 2; str 68.2 2.8 9.7E-05 40.8 3.1 24 109-132 27-50 (243)
375 2wwf_A Thymidilate kinase, put 68.0 6.4 0.00022 36.8 5.5 23 110-132 9-31 (212)
376 3c8u_A Fructokinase; YP_612366 67.8 9.6 0.00033 35.7 6.8 20 109-128 20-39 (208)
377 1nkt_A Preprotein translocase 67.7 9.8 0.00033 44.1 7.8 59 137-202 458-516 (922)
378 3dkp_A Probable ATP-dependent 67.7 4.8 0.00016 38.7 4.7 79 299-380 97-185 (245)
379 3be4_A Adenylate kinase; malar 67.4 2.8 9.6E-05 39.9 2.9 23 110-132 4-26 (217)
380 3cmu_A Protein RECA, recombina 67.4 4.2 0.00014 51.5 5.0 47 109-156 1079-1125(2050)
381 3cio_A ETK, tyrosine-protein k 67.3 12 0.0004 37.7 7.7 35 111-145 104-139 (299)
382 2bwj_A Adenylate kinase 5; pho 67.2 2.6 8.8E-05 39.1 2.5 21 111-131 12-32 (199)
383 3p32_A Probable GTPase RV1496/ 67.1 11 0.00038 38.8 7.6 37 110-146 78-114 (355)
384 2x8a_A Nuclear valosin-contain 67.0 4 0.00014 40.6 4.0 18 111-128 44-61 (274)
385 1ukz_A Uridylate kinase; trans 66.9 2.7 9.2E-05 39.3 2.6 20 111-130 15-34 (203)
386 1ak2_A Adenylate kinase isoenz 66.8 3.6 0.00012 39.6 3.6 23 110-132 15-37 (233)
387 3a00_A Guanylate kinase, GMP k 66.8 2.7 9.4E-05 38.9 2.6 16 113-128 3-18 (186)
388 3cmw_A Protein RECA, recombina 66.8 4.7 0.00016 50.3 5.2 40 109-148 32-71 (1706)
389 1e4v_A Adenylate kinase; trans 66.7 3.2 0.00011 39.3 3.1 21 112-132 1-21 (214)
390 3eph_A TRNA isopentenyltransfe 66.7 3.4 0.00012 43.7 3.5 20 113-132 4-23 (409)
391 2r62_A Cell division protease 66.3 2 7E-05 42.1 1.7 20 111-130 44-63 (268)
392 3l9o_A ATP-dependent RNA helic 66.1 9.5 0.00032 45.8 7.7 80 138-218 440-553 (1108)
393 1ixz_A ATP-dependent metallopr 66.0 2.8 9.6E-05 40.8 2.6 19 111-129 49-67 (254)
394 3ney_A 55 kDa erythrocyte memb 66.0 3.8 0.00013 38.8 3.4 21 110-130 18-38 (197)
395 1qf9_A UMP/CMP kinase, protein 65.9 3.7 0.00013 37.6 3.3 21 111-131 6-26 (194)
396 1g41_A Heat shock protein HSLU 65.8 3.9 0.00013 43.8 3.9 20 110-129 49-68 (444)
397 1ex7_A Guanylate kinase; subst 65.8 2.8 9.7E-05 39.3 2.5 16 113-128 3-18 (186)
398 2vli_A Antibiotic resistance p 65.6 2 6.8E-05 39.3 1.4 20 111-130 5-24 (183)
399 3zq6_A Putative arsenical pump 65.5 6.1 0.00021 40.2 5.2 35 113-147 16-50 (324)
400 1cke_A CK, MSSA, protein (cyti 65.3 3.2 0.00011 39.4 2.8 20 111-130 5-24 (227)
401 1g8p_A Magnesium-chelatase 38 65.2 2.1 7.1E-05 43.7 1.6 19 111-129 45-63 (350)
402 1byi_A Dethiobiotin synthase; 65.1 7.1 0.00024 36.9 5.3 33 115-147 6-38 (224)
403 1e6c_A Shikimate kinase; phosp 64.6 3.1 0.00011 37.6 2.4 20 112-131 3-22 (173)
404 4gp7_A Metallophosphoesterase; 64.6 2.6 8.8E-05 38.6 1.9 19 111-129 9-27 (171)
405 2yhs_A FTSY, cell division pro 64.5 6.6 0.00023 42.6 5.3 39 110-148 292-331 (503)
406 3bs4_A Uncharacterized protein 64.3 6.6 0.00023 38.8 5.0 52 109-161 19-70 (260)
407 2gza_A Type IV secretion syste 64.2 3.9 0.00013 42.5 3.4 19 110-128 174-192 (361)
408 3bfv_A CAPA1, CAPB2, membrane 64.1 15 0.00051 36.3 7.6 52 94-145 62-117 (271)
409 1np6_A Molybdopterin-guanine d 64.0 8 0.00027 35.7 5.2 19 112-130 7-25 (174)
410 1uf9_A TT1252 protein; P-loop, 64.0 4 0.00014 37.8 3.2 21 110-130 7-27 (203)
411 2woo_A ATPase GET3; tail-ancho 64.0 6.3 0.00021 40.3 4.9 35 112-146 20-54 (329)
412 1u0j_A DNA replication protein 63.9 7.7 0.00026 38.5 5.3 19 111-129 104-122 (267)
413 1qvr_A CLPB protein; coiled co 63.8 3.3 0.00011 48.3 3.1 19 112-130 589-607 (854)
414 3kjh_A CO dehydrogenase/acetyl 63.8 4.6 0.00016 38.8 3.7 32 114-145 3-34 (254)
415 1via_A Shikimate kinase; struc 63.7 4.1 0.00014 37.0 3.1 20 113-132 6-25 (175)
416 2plr_A DTMP kinase, probable t 63.6 8.3 0.00028 35.8 5.4 21 111-131 4-24 (213)
417 3asz_A Uridine kinase; cytidin 63.3 3.2 0.00011 39.0 2.3 19 110-128 5-23 (211)
418 2jaq_A Deoxyguanosine kinase; 63.3 4.1 0.00014 37.7 3.1 19 113-131 2-20 (205)
419 1q0u_A Bstdead; DEAD protein, 63.2 3.8 0.00013 38.8 2.9 77 300-380 72-160 (219)
420 2vhj_A Ntpase P4, P4; non- hyd 63.0 2 6.8E-05 44.1 0.8 34 111-147 123-156 (331)
421 1z6g_A Guanylate kinase; struc 62.7 3.8 0.00013 39.2 2.8 19 110-128 22-40 (218)
422 3umf_A Adenylate kinase; rossm 62.5 5.1 0.00017 38.5 3.6 23 111-133 29-51 (217)
423 1zuh_A Shikimate kinase; alpha 62.1 4.6 0.00016 36.4 3.1 21 112-132 8-28 (168)
424 3b85_A Phosphate starvation-in 61.9 7.5 0.00026 36.9 4.7 31 91-128 9-39 (208)
425 2bdt_A BH3686; alpha-beta prot 61.8 3.5 0.00012 38.0 2.3 18 113-130 4-21 (189)
426 3ug7_A Arsenical pump-driving 61.7 7.7 0.00026 40.0 5.1 33 114-146 29-61 (349)
427 2pt7_A CAG-ALFA; ATPase, prote 61.5 3.7 0.00013 42.2 2.6 18 111-128 171-188 (330)
428 1ihu_A Arsenical pump-driving 61.3 8.5 0.00029 42.7 5.7 36 111-146 8-43 (589)
429 4a4z_A Antiviral helicase SKI2 61.2 19 0.00063 42.8 8.9 82 139-223 336-452 (997)
430 2bbw_A Adenylate kinase 4, AK4 61.0 4.1 0.00014 39.5 2.7 20 111-130 27-46 (246)
431 2v9p_A Replication protein E1; 60.8 6 0.0002 40.1 4.0 46 96-147 114-159 (305)
432 2if2_A Dephospho-COA kinase; a 60.6 3.9 0.00013 38.2 2.4 17 113-129 3-19 (204)
433 1f2t_A RAD50 ABC-ATPase; DNA d 60.5 5.3 0.00018 35.7 3.2 16 113-128 25-40 (149)
434 2qt1_A Nicotinamide riboside k 60.3 5.1 0.00017 37.5 3.2 19 111-129 21-39 (207)
435 2zan_A Vacuolar protein sortin 60.3 5.2 0.00018 42.8 3.6 20 110-129 166-185 (444)
436 1tf7_A KAIC; homohexamer, hexa 60.0 8.8 0.0003 41.9 5.5 39 110-148 280-318 (525)
437 2xb4_A Adenylate kinase; ATP-b 60.0 5 0.00017 38.3 3.1 21 112-132 1-21 (223)
438 1s96_A Guanylate kinase, GMP k 59.9 4.5 0.00015 38.8 2.7 19 110-128 15-33 (219)
439 4edh_A DTMP kinase, thymidylat 59.9 9.4 0.00032 36.4 5.0 35 111-145 6-40 (213)
440 1in4_A RUVB, holliday junction 59.6 5.8 0.0002 40.5 3.7 20 111-130 51-70 (334)
441 3o8b_A HCV NS3 protease/helica 59.5 13 0.00045 41.8 6.8 67 138-218 395-461 (666)
442 3fmo_B ATP-dependent RNA helic 59.5 12 0.0004 37.6 6.0 74 300-380 162-245 (300)
443 1hyq_A MIND, cell division inh 59.3 9.8 0.00034 36.9 5.2 32 115-146 7-38 (263)
444 1ye8_A Protein THEP1, hypothet 59.2 5.5 0.00019 36.8 3.1 16 113-128 2-17 (178)
445 2w00_A HSDR, R.ECOR124I; ATP-b 59.1 29 0.001 41.2 10.0 82 139-221 537-675 (1038)
446 1vht_A Dephospho-COA kinase; s 59.0 4.4 0.00015 38.3 2.5 20 111-130 4-23 (218)
447 1iy2_A ATP-dependent metallopr 58.8 5.5 0.00019 39.4 3.3 18 111-128 73-90 (278)
448 1gtv_A TMK, thymidylate kinase 58.7 3.7 0.00013 38.5 1.9 17 114-130 3-19 (214)
449 4akg_A Glutathione S-transfera 58.6 14 0.00048 48.4 7.6 61 85-148 900-963 (2695)
450 1yrb_A ATP(GTP)binding protein 58.4 8.2 0.00028 37.4 4.5 35 111-146 14-48 (262)
451 1r6b_X CLPA protein; AAA+, N-t 58.3 8.1 0.00028 44.3 5.0 18 113-130 490-507 (758)
452 1g3q_A MIND ATPase, cell divis 58.3 8.8 0.0003 36.5 4.6 32 115-146 7-38 (237)
453 3la6_A Tyrosine-protein kinase 58.2 21 0.00071 35.6 7.5 34 112-145 93-127 (286)
454 1znw_A Guanylate kinase, GMP k 57.9 5.1 0.00018 37.7 2.7 18 111-128 20-37 (207)
455 1sky_E F1-ATPase, F1-ATP synth 57.7 69 0.0024 34.4 11.7 35 96-134 140-174 (473)
456 2ph1_A Nucleotide-binding prot 57.6 9.1 0.00031 37.4 4.6 32 115-146 23-54 (262)
457 1pzn_A RAD51, DNA repair and r 57.0 6.3 0.00022 40.7 3.5 49 97-147 119-173 (349)
458 1jjv_A Dephospho-COA kinase; P 56.5 4.9 0.00017 37.6 2.3 17 113-129 4-20 (206)
459 3iqw_A Tail-anchored protein t 56.4 9.9 0.00034 39.0 4.8 36 111-146 16-51 (334)
460 4dzz_A Plasmid partitioning pr 56.2 8.6 0.00029 35.6 4.0 30 117-146 8-37 (206)
461 4eaq_A DTMP kinase, thymidylat 56.1 9.8 0.00034 36.6 4.5 23 110-132 25-47 (229)
462 3q9l_A Septum site-determining 56.0 10 0.00034 36.7 4.6 31 115-145 7-37 (260)
463 3of5_A Dethiobiotin synthetase 55.9 14 0.00047 35.6 5.5 34 114-147 7-41 (228)
464 3k1j_A LON protease, ATP-depen 55.4 8.1 0.00028 43.1 4.3 34 94-130 46-79 (604)
465 1nij_A Hypothetical protein YJ 54.9 7.8 0.00027 39.4 3.7 34 113-148 6-39 (318)
466 3lnc_A Guanylate kinase, GMP k 54.8 5.1 0.00018 38.3 2.2 19 111-129 27-45 (231)
467 2woj_A ATPase GET3; tail-ancho 54.6 12 0.00042 38.5 5.2 36 112-147 19-56 (354)
468 2f6r_A COA synthase, bifunctio 54.5 5.5 0.00019 39.7 2.4 21 111-131 75-95 (281)
469 3end_A Light-independent proto 54.3 13 0.00044 37.1 5.2 35 111-145 41-75 (307)
470 4e22_A Cytidylate kinase; P-lo 54.1 7.9 0.00027 37.8 3.5 21 110-130 26-46 (252)
471 1uj2_A Uridine-cytidine kinase 53.9 5.6 0.00019 38.7 2.4 19 111-129 22-40 (252)
472 1bg2_A Kinesin; motor protein, 53.5 6.8 0.00023 40.1 2.9 39 89-128 53-95 (325)
473 3io3_A DEHA2D07832P; chaperone 53.1 14 0.00049 38.0 5.4 37 111-147 18-56 (348)
474 2afh_E Nitrogenase iron protei 53.0 14 0.00047 36.6 5.2 32 114-145 5-36 (289)
475 1ry6_A Internal kinesin; kines 53.0 6.1 0.00021 41.1 2.5 38 89-128 59-102 (360)
476 3lv8_A DTMP kinase, thymidylat 52.9 17 0.00058 35.2 5.6 31 111-141 27-57 (236)
477 3b6u_A Kinesin-like protein KI 52.8 7.9 0.00027 40.4 3.3 39 89-128 77-119 (372)
478 3r20_A Cytidylate kinase; stru 52.7 8.2 0.00028 37.5 3.3 21 111-131 9-29 (233)
479 2y65_A Kinesin, kinesin heavy 52.7 7.1 0.00024 40.7 2.9 39 89-128 60-102 (365)
480 3nwj_A ATSK2; P loop, shikimat 52.5 8.6 0.00029 37.7 3.4 21 111-131 48-68 (250)
481 3tqf_A HPR(Ser) kinase; transf 52.4 8.2 0.00028 35.8 3.0 22 111-132 16-37 (181)
482 3qks_A DNA double-strand break 52.2 8.3 0.00028 36.3 3.2 17 112-128 24-40 (203)
483 3v9p_A DTMP kinase, thymidylat 52.1 12 0.00043 36.0 4.5 36 110-145 24-63 (227)
484 3kta_A Chromosome segregation 51.9 8.6 0.00029 35.0 3.1 16 113-128 28-43 (182)
485 1p5z_B DCK, deoxycytidine kina 51.7 6.4 0.00022 38.5 2.4 19 110-128 23-41 (263)
486 3b6e_A Interferon-induced heli 51.7 6.7 0.00023 36.5 2.4 78 300-381 82-173 (216)
487 1t5c_A CENP-E protein, centrom 51.5 7.8 0.00027 40.1 3.1 39 89-128 53-95 (349)
488 1cp2_A CP2, nitrogenase iron p 51.2 15 0.0005 35.8 4.9 31 115-145 5-35 (269)
489 2grj_A Dephospho-COA kinase; T 51.2 6.1 0.00021 37.1 2.0 41 111-157 12-52 (192)
490 1ltq_A Polynucleotide kinase; 51.2 6.2 0.00021 39.3 2.2 19 112-130 3-21 (301)
491 3vkg_A Dynein heavy chain, cyt 51.1 19 0.00064 47.9 7.0 67 86-156 884-954 (3245)
492 4tmk_A Protein (thymidylate ki 51.1 19 0.00066 34.2 5.6 30 111-140 3-32 (213)
493 3auy_A DNA double-strand break 51.0 8.1 0.00028 40.1 3.1 17 112-128 26-42 (371)
494 1x88_A Kinesin-like protein KI 50.6 7.9 0.00027 40.2 2.9 39 89-128 64-106 (359)
495 2oze_A ORF delta'; para, walke 50.5 30 0.001 34.1 7.3 34 112-145 35-71 (298)
496 3dc4_A Kinesin-like protein NO 50.5 7.1 0.00024 40.3 2.5 39 89-128 70-112 (344)
497 2h92_A Cytidylate kinase; ross 50.3 7.7 0.00026 36.5 2.6 20 111-130 3-22 (219)
498 2vvg_A Kinesin-2; motor protei 50.2 8.3 0.00029 39.9 3.0 39 89-128 65-107 (350)
499 3qf7_A RAD50; ABC-ATPase, ATPa 50.0 8.7 0.0003 39.9 3.2 16 113-128 25-40 (365)
500 1goj_A Kinesin, kinesin heavy 49.9 8.3 0.00028 40.0 2.9 39 89-128 56-98 (355)
No 1
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.9e-87 Score=810.22 Aligned_cols=611 Identities=35% Similarity=0.619 Sum_probs=547.2
Q ss_pred ceeeeecCCCCCCchHHHhcCCCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCCCCh-hHHHHHhcCCCCCCH
Q 006476 14 IMFCYDFRPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNP-AIAEFAAQFPYEPTP 92 (643)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~l~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~tp 92 (643)
.++++|.|++. ..+.++++++ +.|++.+.++++.+.++|.+++++|+.|...+++++++++ +++.|.+.|+|++||
T Consensus 530 ~~~~~y~g~~~--~~~~l~~l~~-~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~g~~~~~~~~~~~~~~~~f~~~~t~ 606 (1151)
T 2eyq_A 530 HLISRYAGGAE--ENAPLHKLGG-DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTP 606 (1151)
T ss_dssp GGEEECCCSCS--SSCCCCCTTC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCCHHHHHHHHHTCCSCCCH
T ss_pred hhHhcccCCCC--CCCchhhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCH
Confidence 46899988754 2588999984 8999999999999999999999999999999999998887 899999999999999
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEE
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVG 172 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~ 172 (643)
+|.+|++.++++|. +.+++|++++||||+|||++|+.+++..+..+++++|++||++||.||+++|.+++..+ ++++.
T Consensus 607 ~Q~~ai~~il~~~~-~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~-~i~v~ 684 (1151)
T 2eyq_A 607 DQAQAINAVLSDMC-QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANW-PVRIE 684 (1151)
T ss_dssp HHHHHHHHHHHHHH-SSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTT-TCCEE
T ss_pred HHHHHHHHHHHHHh-cCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcC-CCeEE
Confidence 99999999999884 45678999999999999999999999999999999999999999999999999988877 58999
Q ss_pred EEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHhcCCCceEEEeccCCChH
Q 006476 173 LLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 252 (643)
Q Consensus 173 ~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~~~~~~vl~lSATp~~~ 252 (643)
.++++.+..++...+..+..|.++|+||||+++.+.+.++++++|||||||+|+..+.+.++.++.+.++++|||||+|+
T Consensus 685 ~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~~g~~~~~~l~~l~~~~~vl~lSATp~p~ 764 (1151)
T 2eyq_A 685 MISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPR 764 (1151)
T ss_dssp EESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSCHHHHHHHHHHHTTSEEEEEESSCCCH
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechHhcChHHHHHHHHhcCCCCEEEEcCCCChh
Confidence 99999999999999999999999999999999998899999999999999999999999999998999999999999999
Q ss_pred hHHHHHhcCCCcceeeCCCCCccceeEEEccCCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEE
Q 006476 253 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 332 (643)
Q Consensus 253 ~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~ 332 (643)
++.+...++.+.+.+..+|..+.++.+++...+...+...+.+.+.++++++||||++++++.+++.|+..+|+.++..+
T Consensus 765 ~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~l 844 (1151)
T 2eyq_A 765 TLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG 844 (1151)
T ss_dssp HHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEEC
T ss_pred hHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 99999999999999999999999999999888888889999999999999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCC
Q 006476 333 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 333 hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~ 412 (643)
||+|++.+|++++++|++|+++|||||+++++|+|+|++++||+++++.|++++|+||+||+||.|+.|+||+++++++.
T Consensus 845 hg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~~ 924 (1151)
T 2eyq_A 845 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA 924 (1151)
T ss_dssp CSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGGG
T ss_pred eCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCccc
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999888
Q ss_pred CcHHHHHHHHHHHHHhhcccchhhhhhhcccccCCCccCccccCCccchhhhhHHHHHHHHHhhhcCccccc-cC--Ccc
Q 006476 413 LSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS-VP--YKS 489 (643)
Q Consensus 413 ~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~-~~--~~~ 489 (643)
.+..+.+|+..++...++|+||.+++.|++|||+|+++|.+|+|++..+||++|.+++++++..+++++... .. ...
T Consensus 925 l~~~~~~rl~~i~~~~~lg~gf~ia~~dl~irg~g~~lg~~q~g~i~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~ 1004 (1151)
T 2eyq_A 925 MTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQ 1004 (1151)
T ss_dssp SCHHHHHHHHHHTTCCSBSHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCSCCGGGSCCC
T ss_pred cCHHHHHHHHHHHHhhccCCcchHHHHHhccCCCcccCCccccCChhhccHHHHHHHHHHHHHHHHcCCCCCcccccccC
Confidence 899999999999999999999999999999999999999999999999999999999999999887432211 11 125
Q ss_pred eeEeeccCCCCCccccCCCCCchHHHHHHHHhcccCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHhhhcCcceEe
Q 006476 490 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIY 569 (643)
Q Consensus 490 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (643)
+.+++++++++|+.||++...|+++|+|++.+ .+.+++.++..||.||||++|.++++||.+++||.+|+++||.+|.
T Consensus 1005 ~~i~l~~~~~ip~~yi~~~~~rl~~y~~l~~~--~~~~~~~~~~~el~drfg~~p~~~~~l~~~~~~k~~~~~~~i~~i~ 1082 (1151)
T 2eyq_A 1005 TEVELRMPSLLPDDFIPDVNTRLSFYKRIASA--KTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLE 1082 (1151)
T ss_dssp CCEECSSCCSCCTTTSCCHHHHHHHHHHHHHC--CSHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHCCSCEE
T ss_pred eeEecCCcCcCChhhcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHCCCcEEE
Confidence 68999999999999999999999999999987 6778999999999999999999999999999999999999999999
Q ss_pred ecCCEEEEEeccCHHH-HHHHHHhhcccccccceeeeC-CeEEEEEEecCChHHHHHHHHHHHHHHH
Q 006476 570 ASGKMVGMKTNMNKKV-FKMMIDSMTSEVHRNSLTFEG-DQIKAELLLELPREQLLNWIFQCLAELY 634 (643)
Q Consensus 570 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (643)
..++.+.+.+.....+ ...+...+... +..+++.+ ..+.+.+.. ....+.++++..+++.+.
T Consensus 1083 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 1146 (1151)
T 2eyq_A 1083 GNEKGGVIEFAEKNHVNPAWLIGLLQKQ--PQHYRLDGPTRLKFIQDL-SERKTRIEWVRQFMRELE 1146 (1151)
T ss_dssp ECSSEEEEECCSSCCCCHHHHHHHHHHC--GGGEEEETTTEEEEECCC-CSHHHHHHHHHHHHHHHH
T ss_pred ecCCeEEEEEecCCCCCHHHHHHHHHhc--CCcEEECCCceEEEEecC-CCHHHHHHHHHHHHHHHH
Confidence 9999988877432111 22233333322 23455543 333332211 124445888888888775
No 2
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.6e-59 Score=539.14 Aligned_cols=424 Identities=36% Similarity=0.590 Sum_probs=350.2
Q ss_pred hHHHhcCCCCcHHHHHH-HHHHHhHHHHHHHHHHH---HHHHHcCCCCCCCCC-hhHHHHHhcCCCCCCHHHHHHHHHhH
Q 006476 28 PRTLSKLSDTTAWERRK-TKGKVAIQKMVVDLMEL---YLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVE 102 (643)
Q Consensus 28 ~~~l~~l~~~~~w~~~~-~~~~~~~~~~~~~l~~~---~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~tp~Q~~ai~~i~ 102 (643)
...|..+|.+.+.+..+ .+.+.+.+++..-.+.+ +..+....+..++.+ ++.+.|.+.++|+|||+|.+|++.++
T Consensus 302 ~~al~~iH~P~~~~~~~~a~~rl~~eEl~~~ql~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~lpf~lt~~Q~~ai~~I~ 381 (780)
T 1gm5_A 302 KDAYYGMHFPKTFYHLEKARERLAYEELFVLQLAFQKIRKEREKHGGIPKKIEGKLAEEFIKSLPFKLTNAQKRAHQEIR 381 (780)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCTHHHHHHHHHSSSCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 45566666554333322 34445555655444343 334444556667655 48899999999999999999999999
Q ss_pred HhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHH
Q 006476 103 RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAE 182 (643)
Q Consensus 103 ~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~ 182 (643)
+++. ++.+++++++||||||||++|+.+++..+.+|.+++|++||++||.|+++++.+.+... ++++..++|+.+..+
T Consensus 382 ~~l~-~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~ 459 (780)
T 1gm5_A 382 NDMI-SEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKF-NIHVALLIGATTPSE 459 (780)
T ss_dssp HHHH-SSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCS-SCCEEECCSSSCHHH
T ss_pred hhcc-ccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhc-CceEEEEeCCCCHHH
Confidence 9884 56678999999999999999999999999899999999999999999999999987665 699999999999988
Q ss_pred HHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCC
Q 006476 183 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 262 (643)
Q Consensus 183 ~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~ 262 (643)
+...+..+.+|.++|+||||+++.+.+.+.++++|||||+|+||+.++..+.....+.++++|||||+|+++.+...+..
T Consensus 460 r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~~qr~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~ 539 (780)
T 1gm5_A 460 KEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDL 539 (780)
T ss_dssp HHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC-----CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCS
T ss_pred HHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhhHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCc
Confidence 88899999999999999999999988999999999999999999987766666667899999999999999998888877
Q ss_pred CcceeeCCCCCccceeEEEccCC-HHHHHHHHHHHHhcCCeEEEEecCcc--------ChHHHHHHHHh-hCCCCcEEEE
Q 006476 263 DASLISTPPPERLPIKTHLSAFS-KEKVISAIKYELDRGGQVFYVLPRIK--------GLEEPMDFLQQ-AFPGVDIAIA 332 (643)
Q Consensus 263 ~~~~i~~~~~~~~~v~~~~~~~~-~~~~~~~i~~~l~~~~qvlvf~~~~~--------~~e~l~~~L~~-~~p~~~v~~~ 332 (643)
+.+.+...|..+.++.+.+.... ...+.+.+.+.+..+++++|||++++ .++.+++.|+. .+|+.++..+
T Consensus 540 ~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~l 619 (780)
T 1gm5_A 540 DVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLM 619 (780)
T ss_dssp SCEEECCCCSSCCCCEECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCC
T ss_pred ceeeeeccCCCCcceEEEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEE
Confidence 78888777777778877665443 45677888888888999999999764 36788888988 7789999999
Q ss_pred eCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCC
Q 006476 333 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 333 hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~ 412 (643)
||+|++.+|+.++++|++|+++|||||+++++|+|+|++++||++++|+++.++|+||+||+||.|+.|+||+++++.
T Consensus 620 HG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~-- 697 (780)
T 1gm5_A 620 HGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV-- 697 (780)
T ss_dssp CSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC--
T ss_pred eCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC--
Confidence 999999999999999999999999999999999999999999999999889999999999999999999999999843
Q ss_pred CcHHHHHHHHHHHHHhhcccchhhhhhhcccccCCCccCccccCCcc
Q 006476 413 LSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVG 459 (643)
Q Consensus 413 ~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~ 459 (643)
+....+|+..++... +||.+++.|+++||.|+++|..|+|.+.
T Consensus 698 -~~~~~~rl~~l~~~~---dgf~iae~dL~~Rg~gd~lG~~qsg~~~ 740 (780)
T 1gm5_A 698 -GEEAMERLRFFTLNT---DGFKIAEYDLKTRGPGEFFGVKQHGLSG 740 (780)
T ss_dssp -CHHHHHHHHHHHTCC---CSHHHHHHHHHSSCCCC----CCCSSCC
T ss_pred -ChHHHHHHHHHHhhh---ccchhhHhhHhccCcchhhhhhhcCCCc
Confidence 567788888876543 5999999999999999999999999764
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.5e-47 Score=417.26 Aligned_cols=323 Identities=21% Similarity=0.286 Sum_probs=260.5
Q ss_pred CCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC--------CCeEEE
Q 006476 74 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--------GKQAMV 144 (643)
Q Consensus 74 ~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~--------g~~vli 144 (643)
+.++ +.+.+.+.++..|||+|.+||+.+++ ++|+++++|||||||++|++|++..+.. +++++|
T Consensus 62 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~-------g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~li 134 (434)
T 2db3_A 62 DLRDIIIDNVNKSGYKIPTPIQKCSIPVISS-------GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVI 134 (434)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEE
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc-------CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEE
Confidence 3444 78889888888999999999999875 5899999999999999999999887642 568999
Q ss_pred EeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEe
Q 006476 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVV 219 (643)
Q Consensus 145 l~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llVi 219 (643)
++||++||.|+++++.+ +....++++..++|+.+...+ ...+..+ ++|+|+||++|.+. ..+.++++||+
T Consensus 135 l~PtreLa~Q~~~~~~~-~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 135 VSPTRELAIQIFNEARK-FAFESYLKIGIVYGGTSFRHQ---NECITRG-CHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp ECSSHHHHHHHHHHHHH-HTTTSSCCCCEECTTSCHHHH---HHHHTTC-CSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred EecCHHHHHHHHHHHHH-HhccCCcEEEEEECCCCHHHH---HHHhhcC-CCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 99999999999999987 554457899999998776543 3334444 89999999998653 35788999999
Q ss_pred ecccccc---h-hH-HHHHHh--cCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCC--ccceeEEEccCCHHHHH
Q 006476 220 DEEQRFG---V-KQ-KEKIAS--FKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSAFSKEKVI 290 (643)
Q Consensus 220 DEah~~g---~-~~-~~~l~~--~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~--~~~v~~~~~~~~~~~~~ 290 (643)
||||++. + .. ...+.. .+++.|++++|||+++.........+.++..+...... ...+...+.........
T Consensus 210 DEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 289 (434)
T 2db3_A 210 DEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKR 289 (434)
T ss_dssp ETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHH
T ss_pred ccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHH
Confidence 9999963 2 22 233333 25789999999999888777777777776655443222 22344444333333333
Q ss_pred HHHHHHHh-cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccccccccc
Q 006476 291 SAIKYELD-RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 369 (643)
Q Consensus 291 ~~i~~~l~-~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip 369 (643)
..+...+. .+.+++|||++++.++.+++.|... ++.+..+||++++.+|++++++|++|+.+|||||+++++|+|+|
T Consensus 290 ~~l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~ 367 (434)
T 2db3_A 290 SKLIEILSEQADGTIVFVETKRGADFLASFLSEK--EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIK 367 (434)
T ss_dssp HHHHHHHHHCCTTEEEECSSHHHHHHHHHHHHHT--TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcc
Confidence 33333332 3456999999999999999999987 89999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 370 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 370 ~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
++++||++|.|. +..+|+||+||+||.|+.|.|++|+++++
T Consensus 368 ~v~~VI~~d~p~-~~~~y~qriGR~gR~g~~G~a~~~~~~~~ 408 (434)
T 2db3_A 368 NIKHVINYDMPS-KIDDYVHRIGRTGRVGNNGRATSFFDPEK 408 (434)
T ss_dssp TCCEEEESSCCS-SHHHHHHHHTTSSCTTCCEEEEEEECTTT
T ss_pred cCCEEEEECCCC-CHHHHHHHhcccccCCCCCEEEEEEeccc
Confidence 999999999997 99999999999999999999999998653
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.8e-45 Score=395.30 Aligned_cols=326 Identities=21% Similarity=0.258 Sum_probs=253.2
Q ss_pred CCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC-------------
Q 006476 73 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA------------- 138 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~------------- 138 (643)
++.++ +.+.+.+.++..|||+|.+|++.+++ ++|+++++|||||||++|++|++..+..
T Consensus 20 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~-------~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (417)
T 2i4i_A 20 VEMGEIIMGNIELTRYTRPTPVQKHAIPIIKE-------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKEN 92 (417)
T ss_dssp SCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHcc-------CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccc
Confidence 34455 77888888889999999999999865 5799999999999999999999876532
Q ss_pred --------CCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc--
Q 006476 139 --------GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-- 208 (643)
Q Consensus 139 --------g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-- 208 (643)
+++++|++||++|+.|+++++.+.. ...++++..++|+.+.... ...+..+ ++|+|+||+.|.+.
T Consensus 93 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~---~~~~~~~-~~I~v~Tp~~l~~~l~ 167 (417)
T 2i4i_A 93 GRYGRRKQYPISLVLAPTRELAVQIYEEARKFS-YRSRVRPCVVYGGADIGQQ---IRDLERG-CHLLVATPGRLVDMME 167 (417)
T ss_dssp BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHH-TTSSCCEEEECSSSCHHHH---HHHHTTC-CSEEEECHHHHHHHHH
T ss_pred cccccccCCccEEEECCcHHHHHHHHHHHHHHh-CcCCceEEEEECCCCHHHH---HHHhhCC-CCEEEEChHHHHHHHH
Confidence 2579999999999999999998744 4447899999997765543 3444444 89999999988642
Q ss_pred ---cccCccceEEeecccccch----hHHHHHHh---cC--CCceEEEeccCCChHhHHHHHhcCCCcceeeCCCC--Cc
Q 006476 209 ---VVYNNLGLLVVDEEQRFGV----KQKEKIAS---FK--ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP--ER 274 (643)
Q Consensus 209 ---~~~~~l~llViDEah~~g~----~~~~~l~~---~~--~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~--~~ 274 (643)
+.+.++++||+||||++.. .....+.. .. ...+++++|||+++.........+.++..+..... ..
T Consensus 168 ~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (417)
T 2i4i_A 168 RGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTS 247 (417)
T ss_dssp TTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CC
T ss_pred cCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 4568899999999999632 12222322 12 26789999999987766666555555544433221 11
Q ss_pred cceeEEEccCCHHHHHHHHHHHH---hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcC
Q 006476 275 LPIKTHLSAFSKEKVISAIKYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG 351 (643)
Q Consensus 275 ~~v~~~~~~~~~~~~~~~i~~~l---~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g 351 (643)
..+...+...........+...+ ..+++++|||++++.++.+++.|... ++.+..+||+|++.+|.++++.|++|
T Consensus 248 ~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g 325 (417)
T 2i4i_A 248 ENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSG 325 (417)
T ss_dssp SSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHHT
T ss_pred cCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC--CCCeeEecCCCCHHHHHHHHHHHHcC
Confidence 22333332223222333333333 35689999999999999999999987 88999999999999999999999999
Q ss_pred CceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCCC
Q 006476 352 AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLL 413 (643)
Q Consensus 352 ~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~~ 413 (643)
+.+|||||+++++|+|+|++++||+++.|. +..+|.||+||+||.|+.|.|++|+++.+..
T Consensus 326 ~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (417)
T 2i4i_A 326 KSPILVATAVAARGLDISNVKHVINFDLPS-DIEEYVHRIGRTGRVGNLGLATSFFNERNIN 386 (417)
T ss_dssp SSCEEEECHHHHTTSCCCCEEEEEESSCCS-SHHHHHHHHTTBCC--CCEEEEEEECGGGGG
T ss_pred CCCEEEECChhhcCCCcccCCEEEEEcCCC-CHHHHHHhcCccccCCCCceEEEEEccccHH
Confidence 999999999999999999999999999997 9999999999999999999999999987643
No 5
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.6e-44 Score=387.16 Aligned_cols=326 Identities=17% Similarity=0.153 Sum_probs=261.4
Q ss_pred CCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC---CCeEEEEec
Q 006476 72 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAP 147 (643)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~---g~~vlil~P 147 (643)
.++.++ +.+.+.+.++..|+|+|.+|++.+++ ++++++++|||+|||++|+.+++..+.. +.+++|++|
T Consensus 12 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 84 (391)
T 1xti_A 12 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL-------GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCH 84 (391)
T ss_dssp GGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTT-------TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECS
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-------CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECC
Confidence 345555 78888888887899999999999864 4789999999999999999999887543 568999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeecc
Q 006476 148 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEE 222 (643)
Q Consensus 148 t~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDEa 222 (643)
|++|+.|+++++.+.....+++++..++|+.+..... ..+..+.++|+|+||+.+.. ...+.++++||+|||
T Consensus 85 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEa 161 (391)
T 1xti_A 85 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 161 (391)
T ss_dssp CHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSH
T ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHH---HHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCH
Confidence 9999999999999865555689999999987665433 34455778999999998863 245688999999999
Q ss_pred cccch--hH----HHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCc---cceeEEEccCCHHHHHHHH
Q 006476 223 QRFGV--KQ----KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER---LPIKTHLSAFSKEKVISAI 293 (643)
Q Consensus 223 h~~g~--~~----~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~---~~v~~~~~~~~~~~~~~~i 293 (643)
|++.. .. ...+...+.+.+++++|||+++.........+.++..+...+... ..+..++...........+
T Consensus 162 H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 241 (391)
T 1xti_A 162 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKL 241 (391)
T ss_dssp HHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHH
T ss_pred HHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHH
Confidence 98733 11 233444567899999999998877666666666665554433221 2333333333322222233
Q ss_pred HHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCC
Q 006476 294 KYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 371 (643)
Q Consensus 294 ~~~l--~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v 371 (643)
...+ ..+++++|||++++.++.+++.|... +..+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++
T Consensus 242 ~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~ 319 (391)
T 1xti_A 242 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV 319 (391)
T ss_dssp HHHHHHSCCSEEEEECSCHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTE
T ss_pred HHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccC
Confidence 2222 25689999999999999999999987 8899999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCC
Q 006476 372 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 372 ~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~ 410 (643)
++||+++.|. +..+|.||+||+||.|+.|.|+++++++
T Consensus 320 ~~Vi~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 357 (391)
T 1xti_A 320 NIAFNYDMPE-DSDTYLHRVARAGRFGTKGLAITFVSDE 357 (391)
T ss_dssp EEEEESSCCS-SHHHHHHHHCBCSSSCCCCEEEEEECSH
T ss_pred CEEEEeCCCC-CHHHHHHhcccccCCCCceEEEEEEccc
Confidence 9999999997 9999999999999999999999999864
No 6
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.1e-44 Score=379.50 Aligned_cols=323 Identities=21% Similarity=0.235 Sum_probs=262.9
Q ss_pred CCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC--CCeEEEEecc
Q 006476 72 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPT 148 (643)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~--g~~vlil~Pt 148 (643)
.++.++ +.+.+.+.++..|+|+|.+|++.++++ ++++++++|||+|||++++.+++..+.. +.+++|++||
T Consensus 10 ~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~------~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~ 83 (367)
T 1hv8_A 10 ELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLND------EYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPT 83 (367)
T ss_dssp GSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHT------CSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSC
T ss_pred hcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC------CCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCC
Confidence 345555 888999999999999999999999761 3689999999999999999999887654 6799999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEeeccc
Q 006476 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQ 223 (643)
Q Consensus 149 ~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViDEah 223 (643)
++|+.|+++++.+.+... ++++..++|+......... +. .++|+|+||+.+.+. ..+.++++||+||||
T Consensus 84 ~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~---~~--~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKA---LK--NANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp HHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHH---HH--TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred HHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhh---cC--CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 999999999999865543 6889999887765543332 22 479999999988642 456889999999999
Q ss_pred ccch-----hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCccceeEEEccCCHHHHHHHHHHHH-
Q 006476 224 RFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYEL- 297 (643)
Q Consensus 224 ~~g~-----~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~i~~~l- 297 (643)
++.. .....+....++.+++++||||++.........+.+...+...... .+...............+...+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~ 235 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKINA--NIEQSYVEVNENERFEALCRLLK 235 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSSS--SSEEEEEECCGGGHHHHHHHHHC
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCCC--CceEEEEEeChHHHHHHHHHHHh
Confidence 8632 1233445556789999999999888777766666666665543322 3333333333333444444444
Q ss_pred hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEe
Q 006476 298 DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 377 (643)
Q Consensus 298 ~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~ 377 (643)
..+++++|||++++.++.+++.|+.. +..+..+||+++..+|+.+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~ 313 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDI--GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINY 313 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEES
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhc--CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEe
Confidence 35578999999999999999999988 8899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 378 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 378 d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
+.|. +..+|.||+||+||.|+.|.|++++++++
T Consensus 314 ~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 346 (367)
T 1hv8_A 314 HLPQ-NPESYMHRIGRTGRAGKKGKAISIINRRE 346 (367)
T ss_dssp SCCS-CHHHHHHHSTTTCCSSSCCEEEEEECTTS
T ss_pred cCCC-CHHHhhhcccccccCCCccEEEEEEcHHH
Confidence 9997 99999999999999999999999998775
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.6e-44 Score=391.94 Aligned_cols=322 Identities=19% Similarity=0.194 Sum_probs=254.2
Q ss_pred CCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---CCCeEEEEeccHH
Q 006476 75 KNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTIV 150 (643)
Q Consensus 75 ~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---~g~~vlil~Pt~~ 150 (643)
.++ +.+.+.+.++..|+|+|.+|++.+++ ++|+++++|||+|||++|+.|++..+. .+.+++|++||++
T Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~-------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~ 116 (410)
T 2j0s_A 44 LREDLLRGIYAYGFEKPSAIQQRAIKQIIK-------GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRE 116 (410)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHH
Confidence 344 77888888888899999999999875 478999999999999999999988764 4679999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEeeccccc
Q 006476 151 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRF 225 (643)
Q Consensus 151 La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViDEah~~ 225 (643)
|+.|+++.+.+ +....++++..+.|+...... ...+..+ ++|+|+||+.|.+. ..+.++++||+||||++
T Consensus 117 L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~---~~~~~~~-~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~ 191 (410)
T 2j0s_A 117 LAVQIQKGLLA-LGDYMNVQCHACIGGTNVGED---IRKLDYG-QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEM 191 (410)
T ss_dssp HHHHHHHHHHH-HTTTTTCCEEEECTTSCHHHH---HHHHHHC-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHH-HhccCCeEEEEEECCCCHHHH---HHHhhcC-CCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHH
Confidence 99999999987 555557899999987765543 3334444 79999999987642 44678999999999986
Q ss_pred ch-----hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCC--CccceeEEEccCC-HHHHHHHHHHHH
Q 006476 226 GV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP--ERLPIKTHLSAFS-KEKVISAIKYEL 297 (643)
Q Consensus 226 g~-----~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~--~~~~v~~~~~~~~-~~~~~~~i~~~l 297 (643)
.. .....+..++++.+++++|||+++.........+.++..+..... ....+...+.... .......+...+
T Consensus 192 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~ 271 (410)
T 2j0s_A 192 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 271 (410)
T ss_dssp TSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHH
Confidence 32 122334455678999999999988766555555555544433211 1112333222211 111222222222
Q ss_pred --hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEE
Q 006476 298 --DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 375 (643)
Q Consensus 298 --~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI 375 (643)
...++++|||++++.++.+++.|... +..+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 272 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi 349 (410)
T 2j0s_A 272 DTLTITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 349 (410)
T ss_dssp HHHTSSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEE
T ss_pred HhcCCCcEEEEEcCHHHHHHHHHHHHhC--CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEE
Confidence 24579999999999999999999987 88999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 376 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 376 ~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
++|.|. +...|.||+||+||.|+.|.|++++++++
T Consensus 350 ~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 384 (410)
T 2j0s_A 350 NYDLPN-NRELYIHRIGRSGRYGRKGVAINFVKNDD 384 (410)
T ss_dssp ESSCCS-SHHHHHHHHTTSSGGGCCEEEEEEEEGGG
T ss_pred EECCCC-CHHHHHHhcccccCCCCceEEEEEecHHH
Confidence 999997 99999999999999999999999998764
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=7.5e-44 Score=385.93 Aligned_cols=335 Identities=21% Similarity=0.212 Sum_probs=263.1
Q ss_pred CCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC---CCeEEEEecc
Q 006476 73 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPT 148 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~---g~~vlil~Pt 148 (643)
++.++ +.+.+.+.++..|+|+|.+|++.+++ ..++++++++|||+|||++|++|++..+.. +++++|++||
T Consensus 30 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-----~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 104 (412)
T 3fht_A 30 LRLKPQLLQGVYAMGFNRPSKIQENALPLMLA-----EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 104 (412)
T ss_dssp GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHS-----SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc-----CCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCC
Confidence 34455 78889988888999999999999975 235899999999999999999999887653 3489999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc------ccccCccceEEeecc
Q 006476 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDEE 222 (643)
Q Consensus 149 ~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~------~~~~~~l~llViDEa 222 (643)
++|+.|+++.+.+....++++.+....++...... ....++|+|+||+.+.+ .+.+.++++||+|||
T Consensus 105 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEa 177 (412)
T 3fht_A 105 YELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 177 (412)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETH
T ss_pred HHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh-------hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCH
Confidence 99999999999885555567889888886543221 12457999999998864 234578999999999
Q ss_pred cccch------hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCC--ccceeEEEc-cCCHHHHHHHH
Q 006476 223 QRFGV------KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLS-AFSKEKVISAI 293 (643)
Q Consensus 223 h~~g~------~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~--~~~v~~~~~-~~~~~~~~~~i 293 (643)
|++.. .....+..++.+.+++++|||+++.........+.++..+...... ...+..... ..........+
T Consensus 178 h~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 257 (412)
T 3fht_A 178 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 257 (412)
T ss_dssp HHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHH
T ss_pred HHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHH
Confidence 98632 1223345556789999999999988877777777776665543221 122333322 22333344444
Q ss_pred HHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCC
Q 006476 294 KYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 371 (643)
Q Consensus 294 ~~~l~--~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v 371 (643)
...+. .+++++|||++++.++.+++.|... +..+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++
T Consensus 258 ~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~ 335 (412)
T 3fht_A 258 CNLYGAITIAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQV 335 (412)
T ss_dssp HHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTE
T ss_pred HHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCC
Confidence 44332 5689999999999999999999998 8899999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCC-----CCHHHHHHHHhccCCCCCceEEEEEecCCCCCcHHHHHHHHHHHH
Q 006476 372 NTIIVQDVQQ-----FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 426 (643)
Q Consensus 372 ~~VI~~d~p~-----~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~~~~~~~~rl~~i~~ 426 (643)
++||+++.|. .+..+|.||+||+||.|+.|.|++++++. .....+..+++
T Consensus 336 ~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-----~~~~~~~~i~~ 390 (412)
T 3fht_A 336 SVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK-----HSMNILNRIQE 390 (412)
T ss_dssp EEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH-----HHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcCh-----hhHHHHHHHHH
Confidence 9999999994 26789999999999999999999999754 23344445544
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=392.99 Aligned_cols=323 Identities=20% Similarity=0.206 Sum_probs=245.5
Q ss_pred CCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---CCCeEEEEeccH
Q 006476 74 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTI 149 (643)
Q Consensus 74 ~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---~g~~vlil~Pt~ 149 (643)
+.++ +.+.+.+.++..|+|+|.++++.+++ ++++++++|||+|||++|+.+++..+. .+.+++|++||+
T Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 118 (414)
T 3eiq_A 46 NLSESLLRGIYAYGFEKPSAIQQRAILPCIK-------GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTR 118 (414)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHhHHHhC-------CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChH
Confidence 4455 77888888888999999999999875 578999999999999999999998765 467899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEeecccc
Q 006476 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQR 224 (643)
Q Consensus 150 ~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViDEah~ 224 (643)
+|+.|+++.+.+. ....+..+..+.|+..... .+..+..+.++|+|+||+.|.+. ..+.++++||+||||+
T Consensus 119 ~L~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~ 194 (414)
T 3eiq_A 119 ELAQQIQKVVMAL-GDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE 194 (414)
T ss_dssp HHHHHHHHHHHHH-GGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH
T ss_pred HHHHHHHHHHHHH-hcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH
Confidence 9999999999974 4444688888888655443 45566667799999999988643 4567899999999998
Q ss_pred cch-----hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCc--cceeEEEccC-CHHHHHHHHHHH
Q 006476 225 FGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAF-SKEKVISAIKYE 296 (643)
Q Consensus 225 ~g~-----~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~--~~v~~~~~~~-~~~~~~~~i~~~ 296 (643)
+.. .....+..++++.+++++|||+++.........+.++..+....... ..+....... ........+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (414)
T 3eiq_A 195 MLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL 274 (414)
T ss_dssp HHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHH
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHH
Confidence 632 22344566678999999999998888877777776665554432221 1222222221 222233333333
Q ss_pred Hh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEE
Q 006476 297 LD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 374 (643)
Q Consensus 297 l~--~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~V 374 (643)
+. .+++++|||++++.++.+++.|... +..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 275 ~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~V 352 (414)
T 3eiq_A 275 YETLTITQAVIFINTRRKVDWLTEKMHAR--DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 352 (414)
T ss_dssp HHSSCCSSCEEECSCHHHHHHHHHHHHTT--TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCE
T ss_pred HHhCCCCcEEEEeCCHHHHHHHHHHHHhc--CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEE
Confidence 33 4579999999999999999999987 8899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCC
Q 006476 375 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 375 I~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~ 410 (643)
|+++.|. +..+|.||+||+||.|+.|.||++++++
T Consensus 353 i~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 387 (414)
T 3eiq_A 353 INYDLPT-NRENYIHRIGRGGRFGRKGVAINMVTEE 387 (414)
T ss_dssp EESSCCS-STHHHHHHSCCC-------CEEEEECST
T ss_pred EEeCCCC-CHHHhhhhcCcccCCCCCceEEEEEcHH
Confidence 9999997 9999999999999999999999999876
No 10
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=9.8e-44 Score=384.30 Aligned_cols=327 Identities=17% Similarity=0.162 Sum_probs=258.5
Q ss_pred CCCCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---CCCeEEEE
Q 006476 70 RPPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVL 145 (643)
Q Consensus 70 ~~~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---~g~~vlil 145 (643)
+..++.++ +.+.+.+.++..|+|+|.+|++.+++ ++++++++|||+|||++|+.+++..+. .+.+++|+
T Consensus 23 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-------~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 95 (400)
T 1s2m_A 23 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIT-------GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIM 95 (400)
T ss_dssp GGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHH-------TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred hhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-------CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEE
Confidence 33455565 88889888888899999999999976 478999999999999999999988765 45689999
Q ss_pred eccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEee
Q 006476 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVD 220 (643)
Q Consensus 146 ~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViD 220 (643)
+||++|+.|+++.+.+.+... ++++..++|+...... ...+ .+.++|+|+||+.+.+ ...+.++++||+|
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~---~~~~-~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 170 (400)
T 1s2m_A 96 VPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDD---ILRL-NETVHILVGTPGRVLDLASRKVADLSDCSLFIMD 170 (400)
T ss_dssp CSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHH---HHHT-TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHH---HHHh-cCCCCEEEEchHHHHHHHHhCCcccccCCEEEEe
Confidence 999999999999999755444 6899999887665432 2222 3558999999998753 2456889999999
Q ss_pred cccccchhH-----HHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCC-CccceeEEEccCCHHHHHHHHH
Q 006476 221 EEQRFGVKQ-----KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP-ERLPIKTHLSAFSKEKVISAIK 294 (643)
Q Consensus 221 Eah~~g~~~-----~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~-~~~~v~~~~~~~~~~~~~~~i~ 294 (643)
|||++.... ...+..+++..+++++|||+++.........+..+..+..... ....+..++...........+.
T Consensus 171 EaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 250 (400)
T 1s2m_A 171 EADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLN 250 (400)
T ss_dssp SHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHH
Confidence 999874322 1223344568899999999988776666666655544433222 1223333333333322233333
Q ss_pred HHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCC
Q 006476 295 YEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 372 (643)
Q Consensus 295 ~~l--~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~ 372 (643)
..+ ..+++++|||++++.++.+++.|... +..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 251 ~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~ 328 (400)
T 1s2m_A 251 TLFSKLQINQAIIFCNSTNRVELLAKKITDL--GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVN 328 (400)
T ss_dssp HHHHHSCCSEEEEECSSHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEE
T ss_pred HHHhhcCCCcEEEEEecHHHHHHHHHHHHhc--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCC
Confidence 322 24579999999999999999999998 88999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 373 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 373 ~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
+||+++.|. +..+|.||+||+||.|+.|.|++++++++
T Consensus 329 ~Vi~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~ 366 (400)
T 1s2m_A 329 VVINFDFPK-TAETYLHRIGRSGRFGHLGLAINLINWND 366 (400)
T ss_dssp EEEESSCCS-SHHHHHHHHCBSSCTTCCEEEEEEECGGG
T ss_pred EEEEeCCCC-CHHHHHHhcchhcCCCCCceEEEEeccch
Confidence 999999997 99999999999999999999999998764
No 11
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=5.1e-44 Score=404.63 Aligned_cols=325 Identities=21% Similarity=0.201 Sum_probs=251.0
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC-------CeEEEEeccHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-------KQAMVLAPTIV 150 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g-------~~vlil~Pt~~ 150 (643)
+.+.+.+.++..|||+|.+||+.++. ..++|++++||||||||++|++|++..+..+ .+++|++||++
T Consensus 83 l~~~l~~~g~~~~~~~Q~~~i~~~l~-----~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 83 IHKAITRMEFPGLTPVQQKTIKPILS-----SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp HHHHHHTTCCSSCCHHHHHHHHHHHS-----SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhc-----CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 56777777777899999999999973 2368999999999999999999999887553 38999999999
Q ss_pred HHHHHHHHHHHHhcC---CCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc------cccCccceEEeec
Q 006476 151 LAKQHFDVVSERFSK---YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNLGLLVVDE 221 (643)
Q Consensus 151 La~Q~~~~~~~~~~~---~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~------~~~~~l~llViDE 221 (643)
||.|+++++++.+.. .+...+..+.|+..... .+..+..+.++|+|+||++|.+. ..++++++|||||
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 234 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDE 234 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEET
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeC
Confidence 999999999875432 23466788887665443 45555555699999999988642 3468899999999
Q ss_pred ccccc---h-hHHHH----HHhc----CCCceEEEeccCCChHhHHHHHhcCCCcceeeC--C----CCCccceeEEE--
Q 006476 222 EQRFG---V-KQKEK----IASF----KISVDVLTLSATPIPRTLYLALTGFRDASLIST--P----PPERLPIKTHL-- 281 (643)
Q Consensus 222 ah~~g---~-~~~~~----l~~~----~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~--~----~~~~~~v~~~~-- 281 (643)
||++. + ...+. +... ..+.|++++|||+++.........+.+...+.. . +.....+...+
T Consensus 235 ah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (563)
T 3i5x_A 235 ADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVI 314 (563)
T ss_dssp HHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEE
T ss_pred HHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEE
Confidence 99863 2 11122 2221 247899999999988776666666555443322 1 11111222221
Q ss_pred ccCCHHH---HHHHHHHHH---hcCCeEEEEecCccChHHHHHHHHhhCC-CCcEEEEeCCCCHHHHHHHHHHHhcCCce
Q 006476 282 SAFSKEK---VISAIKYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAFP-GVDIAIAHGQQYSRQLEETMEKFAQGAIK 354 (643)
Q Consensus 282 ~~~~~~~---~~~~i~~~l---~~~~qvlvf~~~~~~~e~l~~~L~~~~p-~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ 354 (643)
....... ....+...+ ..+++++|||+++..++.+++.|+..++ ++.+..+||+|++.+|+.+++.|++|+.+
T Consensus 315 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~ 394 (563)
T 3i5x_A 315 SEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG 394 (563)
T ss_dssp ESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE
T ss_pred CchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCC
Confidence 1111122 233333333 3568999999999999999999998765 78999999999999999999999999999
Q ss_pred EEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 355 ILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 355 ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
|||||+++++|||+|++++||+++.|. +..+|+||+||+||.|+.|.|++++++.+
T Consensus 395 vLvaT~~~~~GiDip~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~~~~~~e 450 (563)
T 3i5x_A 395 ILVCTDVGARGMDFPNVHEVLQIGVPS-ELANYIHRIGRTARSGKEGSSVLFICKDE 450 (563)
T ss_dssp EEEECGGGTSSCCCTTCCEEEEESCCS-STTHHHHHHTTSSCTTCCEEEEEEEEGGG
T ss_pred EEEEcchhhcCCCcccCCEEEEECCCC-chhhhhhhcCccccCCCCceEEEEEchhH
Confidence 999999999999999999999999997 99999999999999999999999998764
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.1e-43 Score=403.48 Aligned_cols=326 Identities=21% Similarity=0.203 Sum_probs=252.7
Q ss_pred hhHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC-------CeEEEEeccH
Q 006476 77 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-------KQAMVLAPTI 149 (643)
Q Consensus 77 ~~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g-------~~vlil~Pt~ 149 (643)
.+.+.+.+.++..|||+|.+||+.++. ..++|+++++|||+|||++|++|++..+..+ .+++|++||+
T Consensus 31 ~l~~~l~~~g~~~~~~~Q~~~i~~il~-----~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr 105 (579)
T 3sqw_A 31 EIHKAITRMEFPGLTPVQQKTIKPILS-----SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 105 (579)
T ss_dssp HHHHHHHTTTCSSCCHHHHHHHHHHHC-----SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHc-----cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchH
Confidence 367788777777899999999999973 2368999999999999999999999876543 4899999999
Q ss_pred HHHHHHHHHHHHHhc---CCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc------ccccCccceEEee
Q 006476 150 VLAKQHFDVVSERFS---KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVD 220 (643)
Q Consensus 150 ~La~Q~~~~~~~~~~---~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~------~~~~~~l~llViD 220 (643)
+|+.|+++++.+.+. ..+.+.+..+.|+..... .+..+..+.++|+|+||++|.+ ...++++++||||
T Consensus 106 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViD 182 (579)
T 3sqw_A 106 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLD 182 (579)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH---HHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEE
Confidence 999999999987543 234567888887655443 4555555669999999998864 2356889999999
Q ss_pred cccccc---h-hHHHH----HHhc----CCCceEEEeccCCChHhHHHHHhcCCCcceeeCC------CCCccceeEEE-
Q 006476 221 EEQRFG---V-KQKEK----IASF----KISVDVLTLSATPIPRTLYLALTGFRDASLISTP------PPERLPIKTHL- 281 (643)
Q Consensus 221 Eah~~g---~-~~~~~----l~~~----~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~------~~~~~~v~~~~- 281 (643)
|||++. + ...+. +... ..+.+++++|||+++.........+.++..+... +.....+...+
T Consensus 183 Eah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 262 (579)
T 3sqw_A 183 EADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVV 262 (579)
T ss_dssp THHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEE
T ss_pred ChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEE
Confidence 999863 2 11222 2222 2378999999999888777666666654433221 11111222222
Q ss_pred -ccCCHH---HHHHHHHHHH---hcCCeEEEEecCccChHHHHHHHHhhCC-CCcEEEEeCCCCHHHHHHHHHHHhcCCc
Q 006476 282 -SAFSKE---KVISAIKYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAFP-GVDIAIAHGQQYSRQLEETMEKFAQGAI 353 (643)
Q Consensus 282 -~~~~~~---~~~~~i~~~l---~~~~qvlvf~~~~~~~e~l~~~L~~~~p-~~~v~~~hg~~~~~~r~~v~~~F~~g~~ 353 (643)
...... .....+...+ ..+++++|||+++..++.+++.|+..++ ++.+..+||+|++.+|+.+++.|++|+.
T Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~ 342 (579)
T 3sqw_A 263 ISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES 342 (579)
T ss_dssp EESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSS
T ss_pred EecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCC
Confidence 111111 2233333333 3468999999999999999999998765 7899999999999999999999999999
Q ss_pred eEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 354 KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 354 ~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
+|||||+++++|+|+|++++||+++.|. +..+|+||+||+||.|+.|.|++++++.+
T Consensus 343 ~vLVaT~~~~~GiDip~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~~~~~~e 399 (579)
T 3sqw_A 343 GILVCTDVGARGMDFPNVHEVLQIGVPS-ELANYIHRIGRTARSGKEGSSVLFICKDE 399 (579)
T ss_dssp EEEEECGGGTSSCCCTTCCEEEEESCCS-STTHHHHHHTTSSCTTCCEEEEEEEEGGG
T ss_pred eEEEEcchhhcCCCcccCCEEEEcCCCC-CHHHhhhhccccccCCCCceEEEEEcccH
Confidence 9999999999999999999999999997 99999999999999999999999998763
No 13
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=7e-44 Score=388.17 Aligned_cols=308 Identities=17% Similarity=0.214 Sum_probs=243.1
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~ 157 (643)
+.+.|.+.++++|||+|.+|++.+++ ++|+++++|||||||++|+.+++.....+++++|++||++|+.|+++
T Consensus 10 ~~~~l~~~~~~~~~~~Q~~~i~~i~~-------~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 82 (414)
T 3oiy_A 10 FRSFFKKKFGKDLTGYQRLWAKRIVQ-------GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLE 82 (414)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHTT-------TCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhc-------CCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHH
Confidence 45567777889999999999999865 47899999999999999999988888889999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc---cccCccceEEeecccccc--------
Q 006476 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR---VVYNNLGLLVVDEEQRFG-------- 226 (643)
Q Consensus 158 ~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~---~~~~~l~llViDEah~~g-------- 226 (643)
++++ +.. .++++..++|+.+..++...+..+..|+++|+|+||++|.+. +.+.++++||+||||++.
T Consensus 83 ~~~~-~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~ 160 (414)
T 3oiy_A 83 RLQK-LAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDT 160 (414)
T ss_dssp HHHH-HCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHH
T ss_pred HHHH-Hcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhh
Confidence 9998 544 589999999999888878888899999899999999998543 456799999999999742
Q ss_pred ------hh---HHHHHHhcC-----------CCceEEEeccCCChHhHH-HHHhcCCCcceeeCCCCCccceeEEEccC-
Q 006476 227 ------VK---QKEKIASFK-----------ISVDVLTLSATPIPRTLY-LALTGFRDASLISTPPPERLPIKTHLSAF- 284 (643)
Q Consensus 227 ------~~---~~~~l~~~~-----------~~~~vl~lSATp~~~~~~-~~~~~~~~~~~i~~~~~~~~~v~~~~~~~- 284 (643)
+. ....+..++ .+.+++++|||+.|.... .....+....... .......+...+...
T Consensus 161 ~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~ 239 (414)
T 3oiy_A 161 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR-LVSVARNITHVRISSR 239 (414)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSC-CCCCCCSEEEEEESSC
T ss_pred HHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCc-cccccccchheeeccC
Confidence 21 122333333 788999999996554321 1111111111111 111122233333332
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEE-EEeCCCCHHHHHHHHHHHhcCCceEEEe----c
Q 006476 285 SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIA-IAHGQQYSRQLEETMEKFAQGAIKILIC----T 359 (643)
Q Consensus 285 ~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~-~~hg~~~~~~r~~v~~~F~~g~~~ILVa----T 359 (643)
....+.+.+.. .+++++|||+++..++.+++.|+.. ++.+. .+||+ +|+ ++.|++|+++|||| |
T Consensus 240 ~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T 308 (414)
T 3oiy_A 240 SKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRF--KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYY 308 (414)
T ss_dssp CHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHT--TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTT
T ss_pred HHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHc--CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcC
Confidence 33444444443 4689999999999999999999998 88898 89985 444 99999999999999 9
Q ss_pred ccccccccccC-CCEEEEecCC--CCCHHHHHHHHhccCCCC----CceEEEEEe
Q 006476 360 NIVESGLDIQN-ANTIIVQDVQ--QFGLAQLYQLRGRVGRAD----KEAHAYLFY 407 (643)
Q Consensus 360 ~i~~~GiDip~-v~~VI~~d~p--~~s~~~~~Qr~GR~GR~g----~~g~a~~l~ 407 (643)
+++++|+|+|+ +++||++|.| . +..+|+||+||+||.| +.|.|++++
T Consensus 309 ~~~~~GiDip~~v~~VI~~~~p~~~-~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 309 GKLTRGVDLPERIKYVIFWGTPSGP-DVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp CCCCCCCCCTTTCCEEEEESCCTTT-CHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred chhhccCccccccCEEEEECCCCCC-CHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 99999999999 9999999999 6 9999999999999987 589999999
No 14
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4.8e-43 Score=376.82 Aligned_cols=326 Identities=21% Similarity=0.248 Sum_probs=257.8
Q ss_pred CCCCCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---CCCeEEE
Q 006476 69 KRPPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMV 144 (643)
Q Consensus 69 ~~~~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---~g~~vli 144 (643)
.+..++.++ +.+.+.+.++..|+|+|.+|++.+++ ..++++++++|||+|||++|+.+++..+. .+++++|
T Consensus 6 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~-----~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~li 80 (395)
T 3pey_A 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLH-----NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAIC 80 (395)
T ss_dssp SSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHC-----SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEE
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHc-----CCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEE
Confidence 344566666 88999999999999999999999975 23589999999999999999999988764 4679999
Q ss_pred EeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEe
Q 006476 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVV 219 (643)
Q Consensus 145 l~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llVi 219 (643)
++||++|+.|+++.+.+ +....++.+....+...... ....++|+|+||+.+.+. ..+.++++||+
T Consensus 81 l~P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 151 (395)
T 3pey_A 81 LAPSRELARQTLEVVQE-MGKFTKITSQLIVPDSFEKN--------KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVL 151 (395)
T ss_dssp ECSSHHHHHHHHHHHHH-HTTTSCCCEEEESTTSSCTT--------SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEE
T ss_pred ECCCHHHHHHHHHHHHH-HhcccCeeEEEEecCchhhh--------ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEE
Confidence 99999999999999987 55555688888877543222 123589999999988642 35788999999
Q ss_pred ecccccch------hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCC--CccceeEEEccC-CHHHHH
Q 006476 220 DEEQRFGV------KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP--ERLPIKTHLSAF-SKEKVI 290 (643)
Q Consensus 220 DEah~~g~------~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~--~~~~v~~~~~~~-~~~~~~ 290 (643)
||||++.. ........++.+.+++++|||+++.........+.+...+..... ....+...+... ......
T Consensus 152 DEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (395)
T 3pey_A 152 DEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKF 231 (395)
T ss_dssp ETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHH
T ss_pred EChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHH
Confidence 99998643 112234445678999999999988766666666655554443221 122233333222 333344
Q ss_pred HHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccc
Q 006476 291 SAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 368 (643)
Q Consensus 291 ~~i~~~l~--~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDi 368 (643)
..+...+. .+++++|||++++.++.+++.|+.. +..+..+||+|++.+|+++++.|++|+.+|||||+++++|+|+
T Consensus 232 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 309 (395)
T 3pey_A 232 DVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE--GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDI 309 (395)
T ss_dssp HHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCC
T ss_pred HHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCc
Confidence 44444333 4589999999999999999999988 8899999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCCC-----CHHHHHHHHhccCCCCCceEEEEEecCC
Q 006476 369 QNANTIIVQDVQQF-----GLAQLYQLRGRVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 369 p~v~~VI~~d~p~~-----s~~~~~Qr~GR~GR~g~~g~a~~l~~~~ 410 (643)
|++++||++|.|.+ +..+|.||+||+||.|+.|.|++++++.
T Consensus 310 p~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 356 (395)
T 3pey_A 310 PTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDK 356 (395)
T ss_dssp TTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred ccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEech
Confidence 99999999999853 7899999999999999999999999764
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.4e-43 Score=401.48 Aligned_cols=320 Identities=18% Similarity=0.195 Sum_probs=258.6
Q ss_pred CCCCh-hHHHHHhcCCC-CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHH
Q 006476 73 YPKNP-AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 150 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~-~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~ 150 (643)
++.++ +.+.+.+.|.| .|+|+|.++|+.+++ ++|+++++|||+|||++|++|++. .+++++|++|+++
T Consensus 26 ~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~-------g~d~lv~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~ 95 (591)
T 2v1x_A 26 FPWSGKVKDILQNVFKLEKFRPLQLETINVTMA-------GKEVFLVMPTGGGKSLCYQLPALC---SDGFTLVICPLIS 95 (591)
T ss_dssp STTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHT-------TCCEEEECCTTSCTTHHHHHHHHT---SSSEEEEECSCHH
T ss_pred CCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc-------CCCEEEEECCCChHHHHHHHHHHH---cCCcEEEEeCHHH
Confidence 45544 67778876555 899999999999975 578999999999999999999875 3679999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHH--hcCCceEEEechHhhhc----------ccccCccceEE
Q 006476 151 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI--KHGHLNIIVGTHSLLGS----------RVVYNNLGLLV 218 (643)
Q Consensus 151 La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l--~~g~~dIiI~T~~~L~~----------~~~~~~l~llV 218 (643)
|+.|+++.+.+. ++++..+++..+..+....+..+ ..+.++|+|+||++|.. ...+.++++||
T Consensus 96 L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iV 170 (591)
T 2v1x_A 96 LMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIA 170 (591)
T ss_dssp HHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEE
Confidence 999999999874 68899999998888877777777 46789999999997742 12356899999
Q ss_pred eecccccc-----h----hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCC--CcceeeCCCCCccceeEEEcc--CC
Q 006476 219 VDEEQRFG-----V----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR--DASLISTPPPERLPIKTHLSA--FS 285 (643)
Q Consensus 219 iDEah~~g-----~----~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~--~~~~i~~~~~~~~~v~~~~~~--~~ 285 (643)
|||||++. + .....+....++.+++++|||+++.........+. +...+.. ...+..+...+.. ..
T Consensus 171 iDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~ 249 (591)
T 2v1x_A 171 VDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQKPSN 249 (591)
T ss_dssp EETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEECCSS
T ss_pred EECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeCCCc
Confidence 99999852 1 12234555567899999999999887665544433 3222222 2233333332222 22
Q ss_pred HHHHHHHHHHHHh---cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccc
Q 006476 286 KEKVISAIKYELD---RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV 362 (643)
Q Consensus 286 ~~~~~~~i~~~l~---~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~ 362 (643)
.......+...+. .+++++|||++++.++.+++.|+.. ++.+..+||+|++.+|+.++++|.+|+.+|||||+++
T Consensus 250 ~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~--g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~ 327 (591)
T 2v1x_A 250 TEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL--GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAF 327 (591)
T ss_dssp HHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTS
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC--CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechh
Confidence 3445555555554 4689999999999999999999988 8999999999999999999999999999999999999
Q ss_pred cccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 363 ESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 363 ~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
++|||+|++++||+++.|. ++.+|+||+||+||.|+.|.|+++|++.+
T Consensus 328 ~~GID~p~V~~VI~~~~p~-s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D 375 (591)
T 2v1x_A 328 GMGIDKPDVRFVIHHSMSK-SMENYYQESGRAGRDDMKADCILYYGFGD 375 (591)
T ss_dssp CTTCCCSCEEEEEESSCCS-SHHHHHHHHTTSCTTSSCEEEEEEECHHH
T ss_pred hcCCCcccccEEEEeCCCC-CHHHHHHHhccCCcCCCCceEEEEEChHH
Confidence 9999999999999999998 99999999999999999999999997653
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.4e-43 Score=393.94 Aligned_cols=313 Identities=20% Similarity=0.246 Sum_probs=253.5
Q ss_pred hHHHHHhcCCC-CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHH
Q 006476 78 AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156 (643)
Q Consensus 78 ~~~~~~~~~~~-~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~ 156 (643)
+.+.+.+.|.| .|+|+|.++|+.+++ ++|+++++|||+|||++|++|++.. ++.++|++|+++|+.|++
T Consensus 13 ~~~~l~~~~g~~~~r~~Q~~~i~~il~-------g~d~lv~apTGsGKTl~~~lp~l~~---~g~~lvi~P~~aL~~q~~ 82 (523)
T 1oyw_A 13 AKQVLQETFGYQQFRPGQEEIIDTVLS-------GRDCLVVMPTGGGKSLCYQIPALLL---NGLTVVVSPLISLMKDQV 82 (523)
T ss_dssp HHHHHHHTTCCSSCCTTHHHHHHHHHT-------TCCEEEECSCHHHHHHHHHHHHHHS---SSEEEEECSCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHc-------CCCEEEECCCCcHHHHHHHHHHHHh---CCCEEEECChHHHHHHHH
Confidence 67778886666 899999999999975 5799999999999999999998743 678999999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeecccccch----
Q 006476 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGV---- 227 (643)
Q Consensus 157 ~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDEah~~g~---- 227 (643)
+.+.+. ++.+..+++..+..+....+..+..|.++|+|+||++|.. .+...++++|||||||++..
T Consensus 83 ~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~ 157 (523)
T 1oyw_A 83 DQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHD 157 (523)
T ss_dssp HHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSC
T ss_pred HHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCc
Confidence 999863 6889999998888887778888888999999999998853 23447899999999998631
Q ss_pred -----hHHHHHHhcCCCceEEEeccCCChHhHHHHH--hcCCCcceeeCCCCCccceeEEEccCC--HHHHHHHHHHHHh
Q 006476 228 -----KQKEKIASFKISVDVLTLSATPIPRTLYLAL--TGFRDASLISTPPPERLPIKTHLSAFS--KEKVISAIKYELD 298 (643)
Q Consensus 228 -----~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~--~~~~~~~~i~~~~~~~~~v~~~~~~~~--~~~~~~~i~~~l~ 298 (643)
.....+....++.+++++|||+.+....... .++.++.++. ....+..+...+.... ...+.+.+.. .
T Consensus 158 fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~~l~~~v~~~~~~~~~l~~~l~~--~ 234 (523)
T 1oyw_A 158 FRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDRPNIRYMLMEKFKPLDQLMRYVQE--Q 234 (523)
T ss_dssp CCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-CCCCCTTEEEEEEECSSHHHHHHHHHHH--T
T ss_pred cHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-CCCCCCceEEEEEeCCCHHHHHHHHHHh--c
Confidence 1112233445679999999999887665333 3444444333 2333334433333222 2223333322 1
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEec
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d 378 (643)
.+++++|||++++.++.+++.|+.. ++.+..+||+|++.+|+.+++.|.+|+.+|||||+++++|||+|++++||+++
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~ 312 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSK--GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHC--CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEEC
Confidence 5679999999999999999999998 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 379 ~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
.|. +.++|+||+||+||.|+.|.|++++++.+
T Consensus 313 ~p~-s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d 344 (523)
T 1oyw_A 313 IPR-NIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (523)
T ss_dssp CCS-SHHHHHHHHTTSCTTSSCEEEEEEECHHH
T ss_pred CCC-CHHHHHHHhccccCCCCCceEEEEeCHHH
Confidence 997 99999999999999999999999997653
No 17
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=6.6e-45 Score=403.97 Aligned_cols=320 Identities=21% Similarity=0.211 Sum_probs=142.2
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC---CeEEEEeccHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG---KQAMVLAPTIVLAKQ 154 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g---~~vlil~Pt~~La~Q 154 (643)
+.+.+.+.++..|||+|.+|++.+++ ..+++++++||||||||++|++|++..+..+ ++++|++||++|+.|
T Consensus 103 l~~~l~~~g~~~p~~~Q~~ai~~il~-----~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q 177 (479)
T 3fmp_B 103 LLQGVYAMGFNRPSKIQENALPLMLA-----EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQ 177 (479)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHTS-----BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHc-----CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHH
Confidence 77888998999999999999999975 2358999999999999999999998876543 389999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc------ccccCccceEEeecccccch-
Q 006476 155 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDEEQRFGV- 227 (643)
Q Consensus 155 ~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~------~~~~~~l~llViDEah~~g~- 227 (643)
+++.+.+.....+++.+....++...... .....+|+|+||++|.+ .+.+.++++|||||||++..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~ 250 (479)
T 3fmp_B 178 TGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIAT 250 (479)
T ss_dssp HHHHHHHHHTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTS
T ss_pred HHHHHHHHHhhCCCceEEEEeCCcccccc-------ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhc
Confidence 99999875444567888888875543221 12347999999999854 34568999999999998632
Q ss_pred ---h--HHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCcc--ceeEEEccCC-HHHHHHHHHHHHh-
Q 006476 228 ---K--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL--PIKTHLSAFS-KEKVISAIKYELD- 298 (643)
Q Consensus 228 ---~--~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~--~v~~~~~~~~-~~~~~~~i~~~l~- 298 (643)
. ....+..++.+.+++++|||+++.........+.++..+........ .+...+.... .......+...+.
T Consensus 251 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 330 (479)
T 3fmp_B 251 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGA 330 (479)
T ss_dssp TTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------------------
T ss_pred CCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhh
Confidence 1 12334445678999999999999888777777777766654332211 1112111111 1112222222222
Q ss_pred -cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEe
Q 006476 299 -RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 377 (643)
Q Consensus 299 -~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~ 377 (643)
.+++++|||+++..++.+++.|... +..+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 331 ~~~~~~lvF~~s~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~ 408 (479)
T 3fmp_B 331 ITIAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINF 408 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCceEEEeCcHHHHHHHHHHHHhC--CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEe
Confidence 3578999999999999999999987 7899999999999999999999999999999999999999999999999999
Q ss_pred cCCC-----CCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 378 DVQQ-----FGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 378 d~p~-----~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
|.|. .+..+|.||+||+||.|+.|.|++|+++.+
T Consensus 409 d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 409 DLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp ---------------------------------------
T ss_pred cCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 9994 256899999999999999999999998653
No 18
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1e-42 Score=366.39 Aligned_cols=306 Identities=17% Similarity=0.169 Sum_probs=242.6
Q ss_pred hhHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHH
Q 006476 77 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156 (643)
Q Consensus 77 ~~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~ 156 (643)
.+.+.+.+.++..|+|+|.+|++.+++ ++++++++|||+|||++|+.+++.. +.+++|++||++|+.|++
T Consensus 4 ~i~~~l~~~g~~~l~~~Q~~~i~~i~~-------~~~~lv~~~TGsGKT~~~~~~~~~~---~~~~liv~P~~~L~~q~~ 73 (337)
T 2z0m_A 4 KIEQAIREMGFKNFTEVQSKTIPLMLQ-------GKNVVVRAKTGSGKTAAYAIPILEL---GMKSLVVTPTRELTRQVA 73 (337)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEECSSHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhc-------CCCEEEEcCCCCcHHHHHHHHHHhh---cCCEEEEeCCHHHHHHHH
Confidence 377888888888999999999999875 4789999999999999999998765 889999999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEeecccccch----
Q 006476 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGV---- 227 (643)
Q Consensus 157 ~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViDEah~~g~---- 227 (643)
+++.+ +....++++..++|+........ .+. .++|+|+||+.|.+. ..+.++++||+||||++..
T Consensus 74 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 147 (337)
T 2z0m_A 74 SHIRD-IGRYMDTKVAEVYGGMPYKAQIN---RVR--NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFI 147 (337)
T ss_dssp HHHHH-HTTTSCCCEEEECTTSCHHHHHH---HHT--TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCH
T ss_pred HHHHH-HhhhcCCcEEEEECCcchHHHHh---hcC--CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccH
Confidence 99987 44444789999998776654332 232 389999999988642 3568899999999998632
Q ss_pred -hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCccceeEEEccC--CHHHHHHHHHHHHhcCCeEE
Q 006476 228 -KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAF--SKEKVISAIKYELDRGGQVF 304 (643)
Q Consensus 228 -~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~--~~~~~~~~i~~~l~~~~qvl 304 (643)
.....+.......+++++|||+++.........+.+...+... .....+....... ........+. ...+++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l 224 (337)
T 2z0m_A 148 DDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-IGLANVEHKFVHVKDDWRSKVQALR--ENKDKGVI 224 (337)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-GGGGGEEEEEEECSSSSHHHHHHHH--TCCCSSEE
T ss_pred HHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-cccCCceEEEEEeChHHHHHHHHHH--hCCCCcEE
Confidence 2233455566788899999999887766666666665555332 1122222222211 1122222221 13568999
Q ss_pred EEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCH
Q 006476 305 YVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 384 (643)
Q Consensus 305 vf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~ 384 (643)
|||++++.++.+++.|. .+..+||+++..+|.+++++|++|+.+|||||+++++|+|+|++++||++++|. +.
T Consensus 225 vf~~~~~~~~~l~~~l~------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~-s~ 297 (337)
T 2z0m_A 225 VFVRTRNRVAKLVRLFD------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ-DL 297 (337)
T ss_dssp EECSCHHHHHHHHTTCT------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS-SH
T ss_pred EEEcCHHHHHHHHHHhh------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC-CH
Confidence 99999999888887775 578999999999999999999999999999999999999999999999999997 99
Q ss_pred HHHHHHHhccCCCCCceEEEEEec
Q 006476 385 AQLYQLRGRVGRADKEAHAYLFYP 408 (643)
Q Consensus 385 ~~~~Qr~GR~GR~g~~g~a~~l~~ 408 (643)
.+|.||+||+||.|+.|.|++++.
T Consensus 298 ~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 298 RTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp HHHHHHHTTBCGGGCCEEEEEEES
T ss_pred HHhhHhcCccccCCCCceEEEEEe
Confidence 999999999999999999999998
No 19
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.3e-45 Score=412.71 Aligned_cols=369 Identities=12% Similarity=0.134 Sum_probs=269.0
Q ss_pred eeeeecCCCCCCchHH---HhcCCCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCCCCh-hH-------HHHH
Q 006476 15 MFCYDFRPNETKRPRT---LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNP-AI-------AEFA 83 (643)
Q Consensus 15 ~~~~~~~~~~~~~~~~---l~~l~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~-~~-------~~~~ 83 (643)
.+++|.+.+ .|. +++++. +.|.+.+...+. ...++..+++.++.+....+..+..++ +. ..|.
T Consensus 24 ~l~~~~~~~----~p~~~f~~~~~~-~~w~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 97 (510)
T 2oca_A 24 ELRDFFSFE----ADGYRFNPRFRY-GNWDGRIRLLDY-NRLLPFGLVGQIKKFCDNFGYKAWIDPQINEKEELSRKDFD 97 (510)
T ss_dssp HHHHHTEEE----CTTGGGCHHHHT-SSCCSEEESCCT-TCEEEGGGGGGHHHHHHHHTCCEEECGGGSCCCSCCHHHHH
T ss_pred HHHHHhCEe----cCCcccChhccc-CccCceEeeccc-CCccccCcHHHHHHHHHHcCCeEEEccCCCCCCCCCHHHHH
Confidence 346676542 355 777774 789886544443 335555666666665544444332221 11 3343
Q ss_pred ---h--cC-----CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCC-eEEEEeccHHHH
Q 006476 84 ---A--QF-----PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK-QAMVLAPTIVLA 152 (643)
Q Consensus 84 ---~--~~-----~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~-~vlil~Pt~~La 152 (643)
. .| +++|||+|.+|++.+++ ++++++++|||+|||++|+.++...+..++ +++||+||++|+
T Consensus 98 ~w~~~~~f~~~~~~~~l~~~Q~~ai~~~~~-------~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~ 170 (510)
T 2oca_A 98 EWLSKLEIYSGNKRIEPHWYQKDAVFEGLV-------NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALT 170 (510)
T ss_dssp HHHHTCCEEETTEEECCCHHHHHHHHHHHH-------HSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHH
T ss_pred HHHhhcccccCCCCCCCCHHHHHHHHHHHh-------cCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHH
Confidence 2 44 66999999999999986 368999999999999999999988776555 999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc--cccCccceEEeecccccchhHH
Q 006476 153 KQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR--VVYNNLGLLVVDEEQRFGVKQK 230 (643)
Q Consensus 153 ~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~--~~~~~l~llViDEah~~g~~~~ 230 (643)
.||+++|.+ +..+++.++..++++.+..++ ..+..+|+|+||+.+... ..++++++|||||||+++....
T Consensus 171 ~Q~~~~~~~-~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~~~~ 242 (510)
T 2oca_A 171 TQMADDFVD-YRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSI 242 (510)
T ss_dssp HHHHHHHHH-TTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCHHHH
T ss_pred HHHHHHHHH-hhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCcccH
Confidence 999999975 777767899999987665442 235689999999999865 5678999999999999988666
Q ss_pred HHH-HhcCCCceEEEeccCCChHhH-HHHHhcCCCcceeeCCCCCcc------c--eeEEEc-------------cCC--
Q 006476 231 EKI-ASFKISVDVLTLSATPIPRTL-YLALTGFRDASLISTPPPERL------P--IKTHLS-------------AFS-- 285 (643)
Q Consensus 231 ~~l-~~~~~~~~vl~lSATp~~~~~-~~~~~~~~~~~~i~~~~~~~~------~--v~~~~~-------------~~~-- 285 (643)
..+ +.+....++++|||||+.... .+...++.+......++.... + +..... .+.
T Consensus 243 ~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (510)
T 2oca_A 243 SSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEE 322 (510)
T ss_dssp HHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHH
T ss_pred HHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHH
Confidence 555 666678899999999954431 122223333444333332110 0 000000 000
Q ss_pred ----------HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceE
Q 006476 286 ----------KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKI 355 (643)
Q Consensus 286 ----------~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~I 355 (643)
...+.+.+.+...++++.++++++++.++.+++.|... +.++..+||+|++.+|+++++.|++|+.+|
T Consensus 323 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~--~~~v~~~~g~~~~~~r~~i~~~f~~g~~~v 400 (510)
T 2oca_A 323 IKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNE--YDKVYYVSGEVDTETRNIMKTLAENGKGII 400 (510)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTT--CSSEEEESSSTTHHHHHHHHHHHHHCCSCE
T ss_pred HHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHc--CCCeEEEECCCCHHHHHHHHHHHhCCCCCE
Confidence 11234444555555677666666689999999999987 458999999999999999999999999999
Q ss_pred EEec-ccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEe
Q 006476 356 LICT-NIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 407 (643)
Q Consensus 356 LVaT-~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~ 407 (643)
|||| +++++|+|+|++++||++++|. ++.+|+|++||+||.|+.|.+++++
T Consensus 401 Lv~T~~~~~~GiDip~v~~vi~~~~~~-s~~~~~Q~~GR~gR~g~~~~~v~i~ 452 (510)
T 2oca_A 401 IVASYGVFSTGISVKNLHHVVLAHGVK-SKIIVLQTIGRVLRKHGSKTIATVW 452 (510)
T ss_dssp EEEEHHHHHHSCCCCSEEEEEESSCCC-SCCHHHHHHHHHHTTTCCCCCCEEE
T ss_pred EEEEcChhhcccccccCcEEEEeCCCC-CHHHHHHHHhcccccCCCCceEEEE
Confidence 9999 9999999999999999999995 9999999999999998776444444
No 20
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=8.7e-44 Score=383.14 Aligned_cols=325 Identities=22% Similarity=0.198 Sum_probs=145.8
Q ss_pred CCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---CCCeEEEEec
Q 006476 72 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAP 147 (643)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---~g~~vlil~P 147 (643)
.++.++ +.+.+.+.++..|+|+|.+|++.+++ ++++++++|||+|||++|+.|++..+. .+++++|++|
T Consensus 25 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-------~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 97 (394)
T 1fuu_A 25 DMELDENLLRGVFGYGFEEPSAIQQRAIMPIIE-------GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAP 97 (394)
T ss_dssp GGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHH-------TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred hcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcC
Confidence 345565 88888888888999999999999976 478999999999999999999988764 3679999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEeecc
Q 006476 148 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEE 222 (643)
Q Consensus 148 t~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViDEa 222 (643)
|++|+.|+++.+.+.+.. .++++..++|+.+..+....+. .++|+|+||+.+.+. ..+.++++||+|||
T Consensus 98 ~~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEa 171 (394)
T 1fuu_A 98 TRELALQIQKVVMALAFH-MDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 171 (394)
T ss_dssp SHHHHHHHHHHHHHHTTT-SCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred CHHHHHHHHHHHHHHhcc-CCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhhCcEEEEECh
Confidence 999999999999875444 3789999999877655444332 378999999988643 34678999999999
Q ss_pred cccch-----hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCc--cceeEEEccCCHHH-HHHHHH
Q 006476 223 QRFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAFSKEK-VISAIK 294 (643)
Q Consensus 223 h~~g~-----~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~--~~v~~~~~~~~~~~-~~~~i~ 294 (643)
|++.. .....+..++++.+++++||||++.........+.++..+....... ..+........... ....+.
T Consensus 172 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (394)
T 1fuu_A 172 DEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLT 251 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------------------
T ss_pred HHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHH
Confidence 98632 22344555677899999999998877766666666555443322111 11111111111111 112222
Q ss_pred HHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCC
Q 006476 295 YEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 372 (643)
Q Consensus 295 ~~l--~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~ 372 (643)
..+ ..+++++|||++++.++.+++.|+.. +..+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|+++
T Consensus 252 ~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~ 329 (394)
T 1fuu_A 252 DLYDSISVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVS 329 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCCcEEEEECCHHHHHHHHHHHHHc--CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCC
Confidence 222 14579999999999999999999987 88999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCC
Q 006476 373 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 373 ~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~ 412 (643)
+||+++.|. +..+|.||+||+||.|+.|.|++++++++.
T Consensus 330 ~Vi~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 368 (394)
T 1fuu_A 330 LVINYDLPA-NKENYIHRIGRGGRFGRKGVAINFVTNEDV 368 (394)
T ss_dssp ----------------------------------------
T ss_pred EEEEeCCCC-CHHHHHHHcCcccCCCCCceEEEEEchhHH
Confidence 999999997 999999999999999999999999988754
No 21
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-41 Score=403.58 Aligned_cols=310 Identities=19% Similarity=0.185 Sum_probs=234.7
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~ 157 (643)
+...+...++|.|||+|.+||+.+.+ +++++++||||||||++|.+|++..+..+++++|++||++|+.|+++
T Consensus 173 ~~~~~~~~~~f~ltp~Q~~AI~~i~~-------g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~ 245 (1108)
T 3l9o_A 173 KRVNEARTYPFTLDPFQDTAISCIDR-------GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYR 245 (1108)
T ss_dssp CCCSCSSCCSSCCCHHHHHHHHHHTT-------TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred hhHHHHHhCCCCCCHHHHHHHHHHHc-------CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHH
Confidence 34466889999999999999999854 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEeecccccch-----
Q 006476 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGV----- 227 (643)
Q Consensus 158 ~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViDEah~~g~----- 227 (643)
+|.+.++ .+++++|+.+. ++.++|+|+||++|.+. ..+.++++|||||||++..
T Consensus 246 ~l~~~~~-----~VglltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~ 309 (1108)
T 3l9o_A 246 ELLAEFG-----DVGLMTGDITI-----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGV 309 (1108)
T ss_dssp HHHHHTS-----SEEEECSSCBC-----------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHH
T ss_pred HHHHHhC-----CccEEeCcccc-----------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHH
Confidence 9998764 57888886652 25689999999988653 3367899999999998743
Q ss_pred hHHHHHHhcCCCceEEEeccCCChHh-HHHHH-hcCCCcceeeCCCCCccceeEEEccCC--------------------
Q 006476 228 KQKEKIASFKISVDVLTLSATPIPRT-LYLAL-TGFRDASLISTPPPERLPIKTHLSAFS-------------------- 285 (643)
Q Consensus 228 ~~~~~l~~~~~~~~vl~lSATp~~~~-~~~~~-~~~~~~~~i~~~~~~~~~v~~~~~~~~-------------------- 285 (643)
.....+..++.++++|+||||++... ..... .....+..+...+....++..++....
T Consensus 310 ~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~ 389 (1108)
T 3l9o_A 310 VWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQ 389 (1108)
T ss_dssp HHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHH
T ss_pred HHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHH
Confidence 33455677788999999999964432 11111 222222222222223333333321100
Q ss_pred ------------------------------------HHHHHHHHHHHHhc-CCeEEEEecCccChHHHHHHHHhhC-C--
Q 006476 286 ------------------------------------KEKVISAIKYELDR-GGQVFYVLPRIKGLEEPMDFLQQAF-P-- 325 (643)
Q Consensus 286 ------------------------------------~~~~~~~i~~~l~~-~~qvlvf~~~~~~~e~l~~~L~~~~-p-- 325 (643)
...+...+...... +++++|||+++..|+.++..|.... .
T Consensus 390 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~ 469 (1108)
T 3l9o_A 390 KAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSD 469 (1108)
T ss_dssp HHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC
T ss_pred HHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCH
Confidence 22223333333333 3699999999999999999886420 0
Q ss_pred ----------------------------------CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCC
Q 006476 326 ----------------------------------GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 371 (643)
Q Consensus 326 ----------------------------------~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v 371 (643)
..+|.++||+|++.+|+.+++.|++|.++|||||+++++|||+|++
T Consensus 470 ~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v 549 (1108)
T 3l9o_A 470 DEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAK 549 (1108)
T ss_dssp ----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--C
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCc
Confidence 0128999999999999999999999999999999999999999999
Q ss_pred CEEEEecCC-------CCCHHHHHHHHhccCCCC--CceEEEEEecCC
Q 006476 372 NTIIVQDVQ-------QFGLAQLYQLRGRVGRAD--KEAHAYLFYPDK 410 (643)
Q Consensus 372 ~~VI~~d~p-------~~s~~~~~Qr~GR~GR~g--~~g~a~~l~~~~ 410 (643)
++||+++.+ ..+..+|+||+|||||.| ..|.||+++++.
T Consensus 550 ~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 550 TVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp EEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred eEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 999975542 236788999999999998 789999999876
No 22
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.1e-41 Score=395.40 Aligned_cols=312 Identities=20% Similarity=0.241 Sum_probs=237.5
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~ 157 (643)
+.+.+.+.++..|+|+|.++++.+.+ +++++++||||||||+++.++++..+..+++++|++|+++||.|+++
T Consensus 14 ~~~~l~~~g~~~l~~~Q~~~i~~i~~-------~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~ 86 (702)
T 2p6r_A 14 AVGILKEEGIEELFPPQAEAVEKVFS-------GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYE 86 (702)
T ss_dssp HHHHHHCC---CCCCCCHHHHHHHTT-------CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhC-------CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHH
Confidence 45556554555999999999999643 58999999999999999999999888889999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc----c-cccCccceEEeecccccch-----
Q 006476 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----R-VVYNNLGLLVVDEEQRFGV----- 227 (643)
Q Consensus 158 ~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~----~-~~~~~l~llViDEah~~g~----- 227 (643)
+++ .+..+ |++++.++|+...... ..+.++|+|+||+.+.. . ..++++++||+||+|+++.
T Consensus 87 ~~~-~~~~~-g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~ 157 (702)
T 2p6r_A 87 SFK-KWEKI-GLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGA 157 (702)
T ss_dssp HHT-TTTTT-TCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHH
T ss_pred HHH-HHHhc-CCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCccc
Confidence 995 56666 7999999997654331 12468999999987753 2 2368899999999999643
Q ss_pred hH---HHHHHhcCCCceEEEeccCCCh-HhHHHHHhcCCCcceeeCCCCCccceeEEEccC------CHH-------HHH
Q 006476 228 KQ---KEKIASFKISVDVLTLSATPIP-RTLYLALTGFRDASLISTPPPERLPIKTHLSAF------SKE-------KVI 290 (643)
Q Consensus 228 ~~---~~~l~~~~~~~~vl~lSATp~~-~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~------~~~-------~~~ 290 (643)
.. ...++...++.++++||||+++ ..... . .+...+.. +....|+...+... +.. ...
T Consensus 158 ~~~~ll~~l~~~~~~~~ii~lSATl~n~~~~~~---~-l~~~~~~~-~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (702)
T 2p6r_A 158 TLEILVTKMRRMNKALRVIGLSATAPNVTEIAE---W-LDADYYVS-DWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFE 232 (702)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEECCCTTHHHHHH---H-TTCEEEEC-CCCSSCEEEEEECSSEEEEEETTEEEEEECCHH
T ss_pred HHHHHHHHHHhcCcCceEEEECCCcCCHHHHHH---H-hCCCcccC-CCCCccceEEEeeCCeeeccCcchhhhhhhhHH
Confidence 11 1223444678999999999864 22221 1 22333322 22233333322110 000 145
Q ss_pred HHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC----------------------------CCcEEEEeCCCCHHHHH
Q 006476 291 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP----------------------------GVDIAIAHGQQYSRQLE 342 (643)
Q Consensus 291 ~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p----------------------------~~~v~~~hg~~~~~~r~ 342 (643)
..+...+..+++++|||++++.++.++..|....+ +.++.++||+|++.+|+
T Consensus 233 ~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~ 312 (702)
T 2p6r_A 233 ELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRR 312 (702)
T ss_dssp HHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHH
T ss_pred HHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHH
Confidence 55666677889999999999999999999876421 13588999999999999
Q ss_pred HHHHHHhcCCceEEEecccccccccccCCCEEEE----ec---CCCCCHHHHHHHHhccCCCC--CceEEEEEecCCC
Q 006476 343 ETMEKFAQGAIKILICTNIVESGLDIQNANTIIV----QD---VQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKS 411 (643)
Q Consensus 343 ~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~----~d---~p~~s~~~~~Qr~GR~GR~g--~~g~a~~l~~~~~ 411 (643)
.+++.|++|+++|||||+++++|+|+|++++||+ || .| .+.++|.||+|||||.| ..|.||+++++.+
T Consensus 313 ~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~-~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 313 VVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKR-IKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp HHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEE-CCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred HHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCc-CCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 9999999999999999999999999999999998 66 45 48999999999999987 5899999998764
No 23
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.4e-41 Score=395.68 Aligned_cols=317 Identities=17% Similarity=0.181 Sum_probs=240.2
Q ss_pred CCCCh-hHHHHHhcCCCCCCHHHHHHHHH-hHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CCCeEEEEeccH
Q 006476 73 YPKNP-AIAEFAAQFPYEPTPDQKKAFLD-VERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTI 149 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~-i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g~~vlil~Pt~ 149 (643)
++.++ +.+.+.+.++..|+|+|.++++. +.+ +++++++||||||||++|.++++..+. ++++++|++|++
T Consensus 6 l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~-------~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~r 78 (720)
T 2zj8_A 6 LRVDERIKSTLKERGIESFYPPQAEALKSGILE-------GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLK 78 (720)
T ss_dssp CCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGG-------TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSG
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-------CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcH
Confidence 45566 66667665556999999999998 433 589999999999999999999987765 689999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeecccc
Q 006476 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQR 224 (643)
Q Consensus 150 ~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDEah~ 224 (643)
+|+.|++++++ .+..+ +++++.++|+.....+ ..+.++|+|+||+.+.. ...++++++|||||+|+
T Consensus 79 aLa~q~~~~~~-~l~~~-g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 149 (720)
T 2zj8_A 79 ALAEEKFQEFQ-DWEKI-GLRVAMATGDYDSKDE-------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHL 149 (720)
T ss_dssp GGHHHHHHHTG-GGGGG-TCCEEEECSCSSCCCG-------GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGG
T ss_pred HHHHHHHHHHH-HHHhc-CCEEEEecCCCCcccc-------ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcc
Confidence 99999999995 56665 7899999996654331 11358999999997743 22368999999999998
Q ss_pred cch-----hHHHHHHhcCCCceEEEeccCCChH-hHHHHHhcCCCcceeeCCCCCccceeEEEcc-----C-C-----HH
Q 006476 225 FGV-----KQKEKIASFKISVDVLTLSATPIPR-TLYLALTGFRDASLISTPPPERLPIKTHLSA-----F-S-----KE 287 (643)
Q Consensus 225 ~g~-----~~~~~l~~~~~~~~vl~lSATp~~~-~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~-----~-~-----~~ 287 (643)
++. .....+..++.+.++++||||+++. .... . .+...+.. +....++...+.. + . ..
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~~~~~~---~-l~~~~~~~-~~rp~~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T 2zj8_A 150 IGSRDRGATLEVILAHMLGKAQIIGLSATIGNPEELAE---W-LNAELIVS-DWRPVKLRRGVFYQGFVTWEDGSIDRFS 224 (720)
T ss_dssp GGCTTTHHHHHHHHHHHBTTBEEEEEECCCSCHHHHHH---H-TTEEEEEC-CCCSSEEEEEEEETTEEEETTSCEEECS
T ss_pred cCCCcccHHHHHHHHHhhcCCeEEEEcCCcCCHHHHHH---H-hCCcccCC-CCCCCcceEEEEeCCeeeccccchhhhh
Confidence 643 2223345555589999999998542 2221 1 12222221 1122222221100 0 0 12
Q ss_pred HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCC-------------------------------CcEEEEeCCC
Q 006476 288 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG-------------------------------VDIAIAHGQQ 336 (643)
Q Consensus 288 ~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~-------------------------------~~v~~~hg~~ 336 (643)
.....+...+..+++++|||++++.++.++..|.+.... .++.++||+|
T Consensus 225 ~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l 304 (720)
T 2zj8_A 225 SWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGL 304 (720)
T ss_dssp STTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTS
T ss_pred HHHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCC
Confidence 234555566678899999999999999999998764211 2599999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEE----ec----CCCCCHHHHHHHHhccCCCC--CceEEEEE
Q 006476 337 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV----QD----VQQFGLAQLYQLRGRVGRAD--KEAHAYLF 406 (643)
Q Consensus 337 ~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~----~d----~p~~s~~~~~Qr~GR~GR~g--~~g~a~~l 406 (643)
++.+|+.+++.|++|.++|||||+++++|+|+|++++||+ || .| .+..+|.||+|||||.| ..|.||++
T Consensus 305 ~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~-~s~~~~~Qr~GRaGR~g~~~~G~~~~l 383 (720)
T 2zj8_A 305 GRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMER-IPIIEVHQMLGRAGRPKYDEVGEGIIV 383 (720)
T ss_dssp CHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEE-CCHHHHHHHHTTBCCTTTCSEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCcc-CCHHHHHHHHhhcCCCCCCCCceEEEE
Confidence 9999999999999999999999999999999999999998 55 34 48999999999999987 58999999
Q ss_pred ecCCC
Q 006476 407 YPDKS 411 (643)
Q Consensus 407 ~~~~~ 411 (643)
+++.+
T Consensus 384 ~~~~~ 388 (720)
T 2zj8_A 384 STSDD 388 (720)
T ss_dssp CSSSC
T ss_pred ecCcc
Confidence 99875
No 24
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-41 Score=375.95 Aligned_cols=318 Identities=21% Similarity=0.199 Sum_probs=216.1
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC---CCeEEEEeccHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAKQ 154 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~---g~~vlil~Pt~~La~Q 154 (643)
+.+.+.+.++..|+|+|.+|++.++++ .++++++++|||||||++|+.+++..+.. +++++|++|+++|+.|
T Consensus 130 ~~~~l~~~g~~~p~~~Q~~ai~~i~~~-----~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q 204 (508)
T 3fho_A 130 XXXXXXXXXXXXXXKIQEKALPLLLSN-----PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQ 204 (508)
T ss_dssp ---------CEECCCTTSSSHHHHHCS-----SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHH
T ss_pred cccccccccccCcHHHHHHHHHHHHcC-----CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHH
Confidence 556666777778999999999999751 25899999999999999999999988654 3489999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeecccccch--
Q 006476 155 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGV-- 227 (643)
Q Consensus 155 ~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDEah~~g~-- 227 (643)
+++++.+.+... ++.+....+...... ....++|+|+||+.+.+ ...+.++++||+||||++..
T Consensus 205 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~ 275 (508)
T 3fho_A 205 IMDVVTEMGKYT-EVKTAFGIKDSVPKG--------AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQ 275 (508)
T ss_dssp HHHHHHHHSTTS-SCCEEC------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC-
T ss_pred HHHHHHHhCCcc-CeeEEEEeCCccccc--------ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccC
Confidence 999999854433 455555444221111 12358999999998864 34578899999999998643
Q ss_pred ----hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCc--cceeEEEccC-CHHHHHHHHHHHHh--
Q 006476 228 ----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAF-SKEKVISAIKYELD-- 298 (643)
Q Consensus 228 ----~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~--~~v~~~~~~~-~~~~~~~~i~~~l~-- 298 (643)
.....+..++.+.+++++|||+.+...........+...+....... ..+....... ........+...+.
T Consensus 276 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~ 355 (508)
T 3fho_A 276 GLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLL 355 (508)
T ss_dssp -CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhc
Confidence 12233455667899999999998777666666666655554332211 1122222111 22223333333332
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEec
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d 378 (643)
.+++++|||+++..++.+++.|... +..+.++||+|+..+|+.+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~--~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~ 433 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTAD--GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYD 433 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTT--TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC--
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEEC
Confidence 4689999999999999999999887 88999999999999999999999999999999999999999999999999999
Q ss_pred CCC-----CCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 379 VQQ-----FGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 379 ~p~-----~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
.|. .+..+|.||+||+||.|+.|.|++++++.+
T Consensus 434 ~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~ 471 (508)
T 3fho_A 434 MPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKK 471 (508)
T ss_dssp --CC-----CTHHHHHTTSCCC-----CEEEEEECTTT
T ss_pred CCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChH
Confidence 983 378999999999999999999999998653
No 25
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.1e-40 Score=381.64 Aligned_cols=318 Identities=20% Similarity=0.199 Sum_probs=238.8
Q ss_pred CCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CCCeEEEEeccH
Q 006476 72 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTI 149 (643)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g~~vlil~Pt~ 149 (643)
.++.++ +.+.+.+.++..|+|+|.+|++.++. .+++++++||||||||+++..+++..+. ++++++|++|++
T Consensus 12 ~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~------~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r 85 (715)
T 2va8_A 12 DLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLL------EGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLR 85 (715)
T ss_dssp GSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTT------TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCH
T ss_pred HcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhc------CCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcH
Confidence 345566 55666665555999999999998432 1589999999999999999999988765 789999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc----c-cccCccceEEeecccc
Q 006476 150 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----R-VVYNNLGLLVVDEEQR 224 (643)
Q Consensus 150 ~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~----~-~~~~~l~llViDEah~ 224 (643)
+||.|++++++ .+..+ +++++.++|+...... .+ +.++|+|+||+.+.. . ..++++++|||||+|+
T Consensus 86 ~La~q~~~~~~-~~~~~-g~~v~~~~G~~~~~~~-----~~--~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 86 ALTNEKYLTFK-DWELI-GFKVAMTSGDYDTDDA-----WL--KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHY 156 (715)
T ss_dssp HHHHHHHHHHG-GGGGG-TCCEEECCSCSSSCCG-----GG--GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGG
T ss_pred HHHHHHHHHHH-HhhcC-CCEEEEEeCCCCCchh-----hc--CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhh
Confidence 99999999995 56665 7899999997654331 11 258999999987753 2 2378999999999999
Q ss_pred cch----hHHHH-HHhcCCCceEEEeccCCCh-HhHHHHHhcCCCcceeeCCCCCccceeEE--------------EccC
Q 006476 225 FGV----KQKEK-IASFKISVDVLTLSATPIP-RTLYLALTGFRDASLISTPPPERLPIKTH--------------LSAF 284 (643)
Q Consensus 225 ~g~----~~~~~-l~~~~~~~~vl~lSATp~~-~~~~~~~~~~~~~~~i~~~~~~~~~v~~~--------------~~~~ 284 (643)
++. ...+. +.++ .+.++++||||+.+ ..+...+ +...+.. +....|+... +...
T Consensus 157 l~~~~~~~~l~~i~~~~-~~~~ii~lSATl~n~~~~~~~l----~~~~~~~-~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (715)
T 2va8_A 157 LNDPERGPVVESVTIRA-KRRNLLALSATISNYKQIAKWL----GAEPVAT-NWRPVPLIEGVIYPERKKKEYNVIFKDN 230 (715)
T ss_dssp GGCTTTHHHHHHHHHHH-HTSEEEEEESCCTTHHHHHHHH----TCEEEEC-CCCSSCEEEEEEEECSSTTEEEEEETTS
T ss_pred cCCcccchHHHHHHHhc-ccCcEEEEcCCCCCHHHHHHHh----CCCccCC-CCCCCCceEEEEecCCcccceeeecCcc
Confidence 742 12222 3333 38999999999863 3332222 1222221 1112222211 1110
Q ss_pred ------CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCC--------------------------------
Q 006476 285 ------SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG-------------------------------- 326 (643)
Q Consensus 285 ------~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~-------------------------------- 326 (643)
........+...+..+++++|||++++.++.++..|....+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 231 TTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp CEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 023456667777778899999999999999999999875432
Q ss_pred --CcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEE----ec-------CCCCCHHHHHHHHhc
Q 006476 327 --VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV----QD-------VQQFGLAQLYQLRGR 393 (643)
Q Consensus 327 --~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~----~d-------~p~~s~~~~~Qr~GR 393 (643)
..+.++||+|++.+|+.+++.|++|.++|||||+++++|+|+|++++||+ || .|. +.++|.||+||
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~-s~~~~~Qr~GR 389 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI-PIMEYKQMSGR 389 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC---------------CHHHHHHHHTT
T ss_pred HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcC-CHHHHHHHhhh
Confidence 35999999999999999999999999999999999999999999999998 77 554 89999999999
Q ss_pred cCCCC--CceEEEEEecCCC
Q 006476 394 VGRAD--KEAHAYLFYPDKS 411 (643)
Q Consensus 394 ~GR~g--~~g~a~~l~~~~~ 411 (643)
|||.| ..|.||+++++.+
T Consensus 390 aGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 390 AGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp BCCTTTCSCEEEEEECSCGG
T ss_pred cCCCCCCCCceEEEEeCCch
Confidence 99987 5899999998764
No 26
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.1e-40 Score=373.12 Aligned_cols=311 Identities=16% Similarity=0.174 Sum_probs=178.3
Q ss_pred cCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC-----CCeEEEEeccHHHHHHHHHHH
Q 006476 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMVLAPTIVLAKQHFDVV 159 (643)
Q Consensus 85 ~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-----g~~vlil~Pt~~La~Q~~~~~ 159 (643)
.++++|||+|.+|++.+++ ++|+++++|||+|||++|+.|++..+.. +++++|++||++|+.|+++.+
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~-------~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 75 (556)
T 4a2p_A 3 METKKARSYQIELAQPAIN-------GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVF 75 (556)
T ss_dssp -----CCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHc-------CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHH
Confidence 4568999999999999975 4789999999999999999999988776 779999999999999999999
Q ss_pred HHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----c-ccCccceEEeecccccchhH--HH
Q 006476 160 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----V-VYNNLGLLVVDEEQRFGVKQ--KE 231 (643)
Q Consensus 160 ~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~-~~~~l~llViDEah~~g~~~--~~ 231 (643)
.+.+... ++++..++|+.+.... +..+..+ ++|+|+||+.|.+. + .+.++++||+||||++.... ..
T Consensus 76 ~~~~~~~-~~~~~~~~g~~~~~~~---~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~ 150 (556)
T 4a2p_A 76 KHHFERQ-GYSVQGISGENFSNVS---VEKVIED-SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNV 150 (556)
T ss_dssp HHHHGGG-TCCEEECCCC-----C---HHHHHHH-CSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHH
T ss_pred HHHhccc-CceEEEEeCCCCcchh---HHHhhCC-CCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHH
Confidence 9866554 6899999987654432 2223333 89999999998742 3 56789999999999974221 11
Q ss_pred ----HHHh----cCCCceEEEeccCCChHh----------HHHHHhcCCCcceeeCCCCC--------ccceeEEEccC-
Q 006476 232 ----KIAS----FKISVDVLTLSATPIPRT----------LYLALTGFRDASLISTPPPE--------RLPIKTHLSAF- 284 (643)
Q Consensus 232 ----~l~~----~~~~~~vl~lSATp~~~~----------~~~~~~~~~~~~~i~~~~~~--------~~~v~~~~~~~- 284 (643)
.+.. ..+..++++|||||.... ...... ..+...+.++... ..+........
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (556)
T 4a2p_A 151 LMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCS-YLDIQAISTVRENIQELQRFMNKPEIDVRLVKR 229 (556)
T ss_dssp HHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHH-HHTCSEEECCCTTHHHHHHHTCCCCEEEEECCC
T ss_pred HHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHH-hcCCeEecchhcchHHHHhcCCCCceEEEEcCC
Confidence 1111 135689999999995421 100001 1111111111100 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 006476 285 -------------------------------------------------------------------------------- 284 (643)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (643)
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (556)
T 4a2p_A 230 RIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLR 309 (556)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHH
T ss_pred CcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------------C--HHHHHHHHHHHH--hc
Q 006476 285 -------------------------------------------------------------S--KEKVISAIKYEL--DR 299 (643)
Q Consensus 285 -------------------------------------------------------------~--~~~~~~~i~~~l--~~ 299 (643)
+ ...+.+.+.... ..
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~ 389 (556)
T 4a2p_A 310 KYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNP 389 (556)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCC
Confidence 0 000111222222 35
Q ss_pred CCeEEEEecCccChHHHHHHHHhh----------CCCCcEEEEeCCCCHHHHHHHHHHHhc-CCceEEEecccccccccc
Q 006476 300 GGQVFYVLPRIKGLEEPMDFLQQA----------FPGVDIAIAHGQQYSRQLEETMEKFAQ-GAIKILICTNIVESGLDI 368 (643)
Q Consensus 300 ~~qvlvf~~~~~~~e~l~~~L~~~----------~p~~~v~~~hg~~~~~~r~~v~~~F~~-g~~~ILVaT~i~~~GiDi 368 (643)
+++++|||+++..++.+++.|... +.|.....+||+|++.+|.+++++|++ |+++|||||+++++|+|+
T Consensus 390 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDi 469 (556)
T 4a2p_A 390 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDI 469 (556)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC--------
T ss_pred CceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCc
Confidence 689999999999999999999764 124455667888999999999999999 999999999999999999
Q ss_pred cCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 369 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 369 p~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
|++++||++|+|. ++.+|+||+|| ||. +.|.||+++++.+
T Consensus 470 p~v~~VI~~d~p~-s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 509 (556)
T 4a2p_A 470 VQCNLVVLYEYSG-NVTKMIQVRGR-GRA-AGSKCILVTSKTE 509 (556)
T ss_dssp ---CEEEEETCCS-CHHHHHHC----------CCEEEEESCHH
T ss_pred hhCCEEEEeCCCC-CHHHHHHhcCC-CCC-CCceEEEEEeCcc
Confidence 9999999999996 99999999999 999 7899999998764
No 27
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=4.6e-40 Score=395.14 Aligned_cols=283 Identities=17% Similarity=0.227 Sum_probs=221.9
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~ 157 (643)
+.+.|...++|+|||+|.+|++.+++ ++|++++||||||||++++.+++..+..+++++|++||++||.|+++
T Consensus 67 ~~~~~~~~~gf~pt~iQ~~ai~~il~-------g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~ 139 (1104)
T 4ddu_A 67 FRSFFKKKFGKDLTGYQRLWAKRIVQ-------GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLE 139 (1104)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHTT-------TCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHc-------CCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHH
Confidence 34456677788999999999999875 57999999999999999999998888889999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc---cccCccceEEeeccccc---------
Q 006476 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR---VVYNNLGLLVVDEEQRF--------- 225 (643)
Q Consensus 158 ~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~---~~~~~l~llViDEah~~--------- 225 (643)
++.+ |. ..+++++.++|+.+..++...+..+..|.++|+|+||++|.+. +.++++++|||||||++
T Consensus 140 ~l~~-l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr 217 (1104)
T 4ddu_A 140 RLQK-LA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDT 217 (1104)
T ss_dssp HHHT-TS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHH
T ss_pred HHHH-hh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchh
Confidence 9997 66 4579999999999887778888999999999999999999653 45689999999999974
Q ss_pred -----chhH---HHHHHhcC-----------CCceEEEeccCCChHhHH-HHHhcCCCcceeeCCCCCccceeEEEccC-
Q 006476 226 -----GVKQ---KEKIASFK-----------ISVDVLTLSATPIPRTLY-LALTGFRDASLISTPPPERLPIKTHLSAF- 284 (643)
Q Consensus 226 -----g~~~---~~~l~~~~-----------~~~~vl~lSATp~~~~~~-~~~~~~~~~~~i~~~~~~~~~v~~~~~~~- 284 (643)
|+.. ...+..++ .+.|++++|||+.|.... .....+....+... ......+...+...
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~-~~~~~~i~~~~~~~~ 296 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRL-VSVARNITHVRISSR 296 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBC-CCCCCCEEEEEESCC
T ss_pred hhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccC-CCCcCCceeEEEecC
Confidence 3321 23344444 788999999997655432 12222222111111 11222333333322
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEE-EEeCCCCHHHHHHHHHHHhcCCceEEEe----c
Q 006476 285 SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIA-IAHGQQYSRQLEETMEKFAQGAIKILIC----T 359 (643)
Q Consensus 285 ~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~-~~hg~~~~~~r~~v~~~F~~g~~~ILVa----T 359 (643)
....+...+.. .+++++||||+++.++.++..|+.. ++.+. .+||+ |++ +++|++|+.+|||| |
T Consensus 297 k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~--g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~T 365 (1104)
T 4ddu_A 297 SKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRF--KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYY 365 (1104)
T ss_dssp CHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHT--TCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTH
T ss_pred HHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhC--CCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCC
Confidence 33444444444 4689999999999999999999998 88998 99993 555 99999999999999 9
Q ss_pred ccccccccccC-CCEEEEecCCC
Q 006476 360 NIVESGLDIQN-ANTIIVQDVQQ 381 (643)
Q Consensus 360 ~i~~~GiDip~-v~~VI~~d~p~ 381 (643)
+++++|||+|+ +++||++|.|.
T Consensus 366 dvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 366 GKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHCCSCCCTTTCCEEEEESCCE
T ss_pred CeeEecCcCCCCCCEEEEECCCC
Confidence 99999999999 99999999997
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-39 Score=384.48 Aligned_cols=303 Identities=20% Similarity=0.199 Sum_probs=231.7
Q ss_pred HhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHH
Q 006476 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSER 162 (643)
Q Consensus 83 ~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~ 162 (643)
...++|+|+|+|.+|++.+.+ ++++++++|||||||++|..+++..+..+++++|++||++|+.|++++|.+.
T Consensus 80 ~~~~~f~L~~~Q~eai~~l~~-------g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 80 ARTYPFTLDPFQDTAISCIDR-------GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp SCCCSSCCCHHHHHHHHHHHH-------TCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHc-------CCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHH
Confidence 678899999999999999875 5789999999999999999999999899999999999999999999999987
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEeecccccc-----hhHHHH
Q 006476 163 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFG-----VKQKEK 232 (643)
Q Consensus 163 ~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViDEah~~g-----~~~~~~ 232 (643)
++ +++.++|+.+.. ..++|+|+||+.|.+. ..++++++|||||+|+++ ......
T Consensus 153 ~~-----~vglltGd~~~~-----------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~i 216 (1010)
T 2xgj_A 153 FG-----DVGLMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEET 216 (1010)
T ss_dssp HS-----CEEEECSSCEEC-----------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred hC-----CEEEEeCCCccC-----------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHH
Confidence 64 678888865432 3479999999987542 456899999999999873 333455
Q ss_pred HHhcCCCceEEEeccCCChHhH-HHHHh-cCC-CcceeeCCCCCccceeEEEccCC------------------------
Q 006476 233 IASFKISVDVLTLSATPIPRTL-YLALT-GFR-DASLISTPPPERLPIKTHLSAFS------------------------ 285 (643)
Q Consensus 233 l~~~~~~~~vl~lSATp~~~~~-~~~~~-~~~-~~~~i~~~~~~~~~v~~~~~~~~------------------------ 285 (643)
+..++.++++|+||||++.... ...+. ... ...++.. +....++..++....
T Consensus 217 l~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~-~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1010)
T 2xgj_A 217 IILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYT-NFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA 295 (1010)
T ss_dssp HHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEE-CCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHH
T ss_pred HHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEec-CCCcccceEEEEecCCcceeeeeccccccchHHHHHHHH
Confidence 6677889999999999754321 11111 111 2222221 222233332221100
Q ss_pred --------------------------------HHHHHHHHHHHHhc-CCeEEEEecCccChHHHHHHHHhhC-C------
Q 006476 286 --------------------------------KEKVISAIKYELDR-GGQVFYVLPRIKGLEEPMDFLQQAF-P------ 325 (643)
Q Consensus 286 --------------------------------~~~~~~~i~~~l~~-~~qvlvf~~~~~~~e~l~~~L~~~~-p------ 325 (643)
...+...+...... .++++|||+++..++.++..|.... .
T Consensus 296 ~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~ 375 (1010)
T 2xgj_A 296 SISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKE 375 (1010)
T ss_dssp TCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHH
T ss_pred HHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHH
Confidence 01111122222223 3589999999999999998886520 0
Q ss_pred ------------------------------CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEE
Q 006476 326 ------------------------------GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 375 (643)
Q Consensus 326 ------------------------------~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI 375 (643)
..+|+++||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||
T Consensus 376 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI 455 (1010)
T 2xgj_A 376 ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVF 455 (1010)
T ss_dssp HHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEE
T ss_pred HHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEE
Confidence 11389999999999999999999999999999999999999999999999
Q ss_pred E----ecC----CCCCHHHHHHHHhccCCCCC--ceEEEEEecCC
Q 006476 376 V----QDV----QQFGLAQLYQLRGRVGRADK--EAHAYLFYPDK 410 (643)
Q Consensus 376 ~----~d~----p~~s~~~~~Qr~GR~GR~g~--~g~a~~l~~~~ 410 (643)
+ ||. |. +..+|+||+|||||.|. .|.||+++++.
T Consensus 456 ~~~~kfd~~~~rp~-s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 456 TSVRKWDGQQFRWV-SGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp SCSEEECSSCEEEC-CHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred eCCcccCCcCCccC-CHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 8 887 54 89999999999999986 59999999865
No 29
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=8.2e-40 Score=367.73 Aligned_cols=310 Identities=20% Similarity=0.249 Sum_probs=205.5
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC-----CCeEEEEeccHHHHHHHHHHHHH
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-----g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
+++|||+|.+|++.+++ ++|+++++|||+|||++|+.|++..+.. +++++|++||++|+.|+++.+.+
T Consensus 2 ~~~~~~~Q~~~i~~~~~-------~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 74 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKK-------GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSR 74 (555)
T ss_dssp CCCCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhC-------CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 58999999999999875 4789999999999999999999988776 77999999999999999999998
Q ss_pred HhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----c-ccCccceEEeecccccchhH--H---
Q 006476 162 RFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----V-VYNNLGLLVVDEEQRFGVKQ--K--- 230 (643)
Q Consensus 162 ~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~-~~~~l~llViDEah~~g~~~--~--- 230 (643)
.+... ++++..++|+.+..... ..+..+ ++|+|+||+.|.+. + .+.++++|||||||++.... .
T Consensus 75 ~~~~~-~~~~~~~~g~~~~~~~~---~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~ 149 (555)
T 3tbk_A 75 YFERL-GYNIASISGATSDSVSV---QHIIED-NDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIM 149 (555)
T ss_dssp HHHTT-TCCEEEECTTTGGGSCH---HHHHHH-CSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHH
T ss_pred HhccC-CcEEEEEcCCCcchhhH---HHHhcC-CCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHH
Confidence 76655 68999999977554432 222223 89999999988753 2 56788999999999974321 1
Q ss_pred -HHHHhc-----CCCceEEEeccCCChHh-------HHH--HHhcCCCcceeeCCCCC--------ccceeEEE-cc---
Q 006476 231 -EKIASF-----KISVDVLTLSATPIPRT-------LYL--ALTGFRDASLISTPPPE--------RLPIKTHL-SA--- 283 (643)
Q Consensus 231 -~~l~~~-----~~~~~vl~lSATp~~~~-------~~~--~~~~~~~~~~i~~~~~~--------~~~v~~~~-~~--- 283 (643)
..+... .+..+++++||||.... ... .+....+...+...... ..+..... ..
T Consensus 150 ~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 229 (555)
T 3tbk_A 150 FRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRT 229 (555)
T ss_dssp HHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCS
T ss_pred HHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcc
Confidence 111111 25679999999995421 110 11111222222211110 00000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 006476 284 -------------------------------------------------------------------------------- 283 (643)
Q Consensus 284 -------------------------------------------------------------------------------- 283 (643)
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (555)
T 3tbk_A 230 SNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRK 309 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHh--cC
Q 006476 284 -------------------------------------------------------------FSKEKVISAIKYELD--RG 300 (643)
Q Consensus 284 -------------------------------------------------------------~~~~~~~~~i~~~l~--~~ 300 (643)
.....+.+.+..... .+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~ 389 (555)
T 3tbk_A 310 YNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPE 389 (555)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCC
Confidence 000011112222222 34
Q ss_pred CeEEEEecCccChHHHHHHHHhhC----------CCCcEEEEeCCCCHHHHHHHHHHHhc-CCceEEEeccccccccccc
Q 006476 301 GQVFYVLPRIKGLEEPMDFLQQAF----------PGVDIAIAHGQQYSRQLEETMEKFAQ-GAIKILICTNIVESGLDIQ 369 (643)
Q Consensus 301 ~qvlvf~~~~~~~e~l~~~L~~~~----------p~~~v~~~hg~~~~~~r~~v~~~F~~-g~~~ILVaT~i~~~GiDip 369 (643)
++++|||+++..++.+++.|.... .|.....+||+|++.+|.+++++|++ |+++|||||+++++|+|+|
T Consensus 390 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp 469 (555)
T 3tbk_A 390 TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIA 469 (555)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETT
T ss_pred ceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccc
Confidence 899999999999999999998751 23355566779999999999999999 9999999999999999999
Q ss_pred CCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 370 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 370 ~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
++++||++|+|. ++.+|+||+|| ||. +.|.||+|+++.+
T Consensus 470 ~v~~VI~~d~p~-s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 508 (555)
T 3tbk_A 470 ECNLVILYEYVG-NVIKMIQTRGR-GRA-RDSKCFLLTSSAD 508 (555)
T ss_dssp SCSEEEEESCCS-SCCCEECSSCC-CTT-TSCEEEEEESCHH
T ss_pred cCCEEEEeCCCC-CHHHHHHhcCc-CcC-CCceEEEEEcCCC
Confidence 999999999996 99999999999 999 8999999998764
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.3e-38 Score=348.06 Aligned_cols=307 Identities=20% Similarity=0.274 Sum_probs=228.9
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CCCeEEEEeccHHHHHHHHHHHHHHhcCC
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFSKY 166 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g~~vlil~Pt~~La~Q~~~~~~~~~~~~ 166 (643)
++|+|+|.++++.+++ + ++++++|||+|||++++.++...+. .+++++|++|+++|+.||++++.+.+ ..
T Consensus 8 ~~l~~~Q~~~i~~~~~-------~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~-~~ 78 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE-------T-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLF-NL 78 (494)
T ss_dssp HCCCHHHHHHHHHGGG-------S-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHB-CS
T ss_pred CCccHHHHHHHHHHhh-------C-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHh-Cc
Confidence 5899999999999865 2 8999999999999999999877654 67899999999999999999999855 33
Q ss_pred CCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeecccccchh-----HHHHHHhc
Q 006476 167 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGVK-----QKEKIASF 236 (643)
Q Consensus 167 ~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDEah~~g~~-----~~~~l~~~ 236 (643)
++.++..++|..........+. .++|+|+||+.+.. .+.+.++++||+||||++... ....+...
T Consensus 79 ~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~ 153 (494)
T 1wp9_A 79 PPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ 153 (494)
T ss_dssp CGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred chhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhc
Confidence 4568999999877665444332 37999999998865 345688999999999997421 12333444
Q ss_pred CCCceEEEeccCCChH--hHHHHHhcCCCc--ceeeCCCCC------ccceeEEEc------------------------
Q 006476 237 KISVDVLTLSATPIPR--TLYLALTGFRDA--SLISTPPPE------RLPIKTHLS------------------------ 282 (643)
Q Consensus 237 ~~~~~vl~lSATp~~~--~~~~~~~~~~~~--~~i~~~~~~------~~~v~~~~~------------------------ 282 (643)
.+..++++|||||... ........+... ......... .........
T Consensus 154 ~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (494)
T 1wp9_A 154 AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPL 233 (494)
T ss_dssp CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999732 222222221110 000000000 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 006476 283 -------------------------------------------------------------------------------- 282 (643)
Q Consensus 283 -------------------------------------------------------------------------------- 282 (643)
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (494)
T 1wp9_A 234 AETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGST 313 (494)
T ss_dssp HHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccc
Confidence
Q ss_pred --------------------------cCC--HHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEE
Q 006476 283 --------------------------AFS--KEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 332 (643)
Q Consensus 283 --------------------------~~~--~~~~~~~i~~~l--~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~ 332 (643)
..+ ...+.+.+.... ..+++++|||+++..++.+++.|... ++.+..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~--~~~~~~~ 391 (494)
T 1wp9_A 314 KASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD--GIKAKRF 391 (494)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT--TCCEEEE
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc--CCCcEEE
Confidence 000 011122222222 35789999999999999999999998 8999999
Q ss_pred eC--------CCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEE
Q 006476 333 HG--------QQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY 404 (643)
Q Consensus 333 hg--------~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~ 404 (643)
|| +|+..+|++++++|++|+.+|||||+++++|+|+|++++||++|.|. ++..|.||+||+||.|+ |.+|
T Consensus 392 ~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~-~~~~~~Qr~GR~~R~g~-g~~~ 469 (494)
T 1wp9_A 392 VGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP-SAIRSIQRRGRTGRHMP-GRVI 469 (494)
T ss_dssp CCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCH-HHHHHHHHHTTSCSCCC-SEEE
T ss_pred eccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCC-CHHHHHHHHhhccCCCC-ceEE
Confidence 99 99999999999999999999999999999999999999999999996 99999999999999997 9999
Q ss_pred EEecCCCC
Q 006476 405 LFYPDKSL 412 (643)
Q Consensus 405 ~l~~~~~~ 412 (643)
.++++++.
T Consensus 470 ~l~~~~t~ 477 (494)
T 1wp9_A 470 ILMAKGTR 477 (494)
T ss_dssp EEEETTSH
T ss_pred EEEecCCH
Confidence 99998753
No 31
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4e-39 Score=373.51 Aligned_cols=316 Identities=20% Similarity=0.244 Sum_probs=193.4
Q ss_pred HHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC-----CeEEEEeccHHHHHHH
Q 006476 81 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-----KQAMVLAPTIVLAKQH 155 (643)
Q Consensus 81 ~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g-----~~vlil~Pt~~La~Q~ 155 (643)
.+...++..|+|+|.++++.+++ ++|+++++|||+|||++|+.+++..+..+ ++++|++||++|+.|+
T Consensus 5 ~l~~~g~~~lr~~Q~~~i~~~l~-------g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~ 77 (696)
T 2ykg_A 5 DTNLYSPFKPRNYQLELALPAMK-------GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQN 77 (696)
T ss_dssp --CTTC--CCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHH
T ss_pred cccccCCCCccHHHHHHHHHHHc-------CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHH
Confidence 45566778999999999999875 57899999999999999999998776542 7899999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----c-ccCccceEEeecccccchhH
Q 006476 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----V-VYNNLGLLVVDEEQRFGVKQ 229 (643)
Q Consensus 156 ~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~-~~~~l~llViDEah~~g~~~ 229 (643)
++.+.+.+.. .++++..++|+.+.... +..+..+ ++|+|+||++|.+. + .+.++++|||||||++....
T Consensus 78 ~~~~~~~~~~-~~~~v~~~~g~~~~~~~---~~~~~~~-~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~ 152 (696)
T 2ykg_A 78 KSVFSKYFER-HGYRVTGISGATAENVP---VEQIVEN-NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH 152 (696)
T ss_dssp HHHHHHHTTT-TTCCEEEECSSSCSSSC---HHHHHHT-CSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC
T ss_pred HHHHHHHhcc-CCceEEEEeCCcccccc---HHHhccC-CCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc
Confidence 9999986543 37899999997654332 2222233 89999999988653 2 46788999999999963211
Q ss_pred --H----HHHHh-----cCCCceEEEeccCCC-------hHhHHHHHhc--CCCcceeeCCCC-----------------
Q 006476 230 --K----EKIAS-----FKISVDVLTLSATPI-------PRTLYLALTG--FRDASLISTPPP----------------- 272 (643)
Q Consensus 230 --~----~~l~~-----~~~~~~vl~lSATp~-------~~~~~~~~~~--~~~~~~i~~~~~----------------- 272 (643)
. ..+.. ..+..++|+|||||. .......... ..+...+.....
T Consensus 153 ~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~ 232 (696)
T 2ykg_A 153 PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFR 232 (696)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEE
T ss_pred cHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEE
Confidence 1 11111 146789999999997 2222111110 011111110000
Q ss_pred ---Ccc--------------------------------------------------------------------------
Q 006476 273 ---ERL-------------------------------------------------------------------------- 275 (643)
Q Consensus 273 ---~~~-------------------------------------------------------------------------- 275 (643)
.+.
T Consensus 233 ~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 312 (696)
T 2ykg_A 233 KVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY 312 (696)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHH
T ss_pred ecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHH
Confidence 000
Q ss_pred ---------------------------------------ceeEEEc-------------------cC-CHHHHHHHHHHH
Q 006476 276 ---------------------------------------PIKTHLS-------------------AF-SKEKVISAIKYE 296 (643)
Q Consensus 276 ---------------------------------------~v~~~~~-------------------~~-~~~~~~~~i~~~ 296 (643)
.+...+. .. ....+...+...
T Consensus 313 ~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~ 392 (696)
T 2ykg_A 313 TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 392 (696)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 0000000 00 001112222222
Q ss_pred H--hcCCeEEEEecCccChHHHHHHHHhhC--CCCcEEEE--------eCCCCHHHHHHHHHHHhc-CCceEEEeccccc
Q 006476 297 L--DRGGQVFYVLPRIKGLEEPMDFLQQAF--PGVDIAIA--------HGQQYSRQLEETMEKFAQ-GAIKILICTNIVE 363 (643)
Q Consensus 297 l--~~~~qvlvf~~~~~~~e~l~~~L~~~~--p~~~v~~~--------hg~~~~~~r~~v~~~F~~-g~~~ILVaT~i~~ 363 (643)
. ..+++++|||+++..++.+++.|+... +++++..+ ||+|++.+|++++++|++ |+.+|||||++++
T Consensus 393 ~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~ 472 (696)
T 2ykg_A 393 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 472 (696)
T ss_dssp HTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSC
T ss_pred hccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhh
Confidence 2 246799999999999999999999861 22777777 569999999999999998 9999999999999
Q ss_pred ccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 364 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 364 ~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
+|||+|++++||++|.|. +..+|+||+|| ||. +.|.|++++++.+
T Consensus 473 ~GiDip~v~~VI~~d~p~-s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~ 517 (696)
T 2ykg_A 473 EGIDIAQCNLVILYEYVG-NVIKMIQTRGR-GRA-RGSKCFLLTSNAG 517 (696)
T ss_dssp CC---CCCSEEEEESCC---CCCC-----------CCCEEEEEESCHH
T ss_pred cCCcCccCCEEEEeCCCC-CHHHHHHhhcc-CcC-CCceEEEEecCCC
Confidence 999999999999999997 99999999999 998 7899999998764
No 32
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=9.7e-40 Score=380.19 Aligned_cols=411 Identities=17% Similarity=0.201 Sum_probs=280.0
Q ss_pred CCCCCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH-HC--CCeEEE
Q 006476 69 KRPPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SA--GKQAMV 144 (643)
Q Consensus 69 ~~~~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~-~~--g~~vli 144 (643)
....++.++ +.+.+...+ ..|++.|.++|+.++.. +.+++++||||||||++....+.... .. +.+++|
T Consensus 73 ~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~------~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilv 145 (773)
T 2xau_A 73 PFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQN------NQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVAC 145 (773)
T ss_dssp TTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHH------CSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEE
T ss_pred CccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhC------CCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEe
Confidence 344455566 667777776 68999999999988762 46899999999999994322222221 22 678999
Q ss_pred EeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc----ccccCccceEEee
Q 006476 145 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVD 220 (643)
Q Consensus 145 l~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~----~~~~~~l~llViD 220 (643)
++|+++|+.|+++++.+.++...+..++.-.++... .....+|+++||+.+.+ ...+.++++||+|
T Consensus 146 l~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~----------~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlD 215 (773)
T 2xau_A 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK----------TSNKTILKYMTDGMLLREAMEDHDLSRYSCIILD 215 (773)
T ss_dssp EESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE----------CCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHhCCchhheecceeccccc----------cCCCCCEEEECHHHHHHHHhhCccccCCCEEEec
Confidence 999999999999998876654334455543332211 12458999999998764 3457899999999
Q ss_pred cccccch------hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCccceeEEEccCCHH----HHH
Q 006476 221 EEQRFGV------KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKE----KVI 290 (643)
Q Consensus 221 Eah~~g~------~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~~----~~~ 290 (643)
|+|..+. .....+....++.++++||||+....+. ..+.+..++..+ ....++..++...... ...
T Consensus 216 Eah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~---~~~~~~~vi~v~-gr~~pv~~~~~~~~~~~~~~~~l 291 (773)
T 2xau_A 216 EAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ---RYFNDAPLLAVP-GRTYPVELYYTPEFQRDYLDSAI 291 (773)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH---HHTTSCCEEECC-CCCCCEEEECCSSCCSCHHHHHH
T ss_pred CccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH---HHhcCCCccccc-CcccceEEEEecCCchhHHHHHH
Confidence 9996322 2233344456789999999999765433 233445555443 3456777665443321 223
Q ss_pred HHHHHHHh--cCCeEEEEecCccChHHHHHHHHhh---------CCCCcEEEEeCCCCHHHHHHHHHHHh-----cCCce
Q 006476 291 SAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQA---------FPGVDIAIAHGQQYSRQLEETMEKFA-----QGAIK 354 (643)
Q Consensus 291 ~~i~~~l~--~~~qvlvf~~~~~~~e~l~~~L~~~---------~p~~~v~~~hg~~~~~~r~~v~~~F~-----~g~~~ 354 (643)
..+..... .+++++|||+++++++.+++.|... .+++.+..+||+|++.+|.++++.|. +|..+
T Consensus 292 ~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k 371 (773)
T 2xau_A 292 RTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK 371 (773)
T ss_dssp HHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE
T ss_pred HHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE
Confidence 33333332 4799999999999999999999851 25788999999999999999999999 99999
Q ss_pred EEEecccccccccccCCCEEEEecC------------------CCCCHHHHHHHHhccCCCCCceEEEEEecCCCCCcHH
Q 006476 355 ILICTNIVESGLDIQNANTIIVQDV------------------QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQ 416 (643)
Q Consensus 355 ILVaT~i~~~GiDip~v~~VI~~d~------------------p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~~~~~ 416 (643)
|||||+++++|||+|++++||+++. |. +.++|.||+|||||. +.|.||.++++++.....
T Consensus 372 VlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~-S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~~~~l 449 (773)
T 2xau_A 372 VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPI-SKASAQQRAGRAGRT-RPGKCFRLYTEEAFQKEL 449 (773)
T ss_dssp EEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEEC-CHHHHHHHHHGGGSS-SSEEEEESSCHHHHHHTS
T ss_pred EEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccC-CHHHHHhhccccCCC-CCCEEEEEecHHHhcccc
Confidence 9999999999999999999999776 64 899999999999999 789999999754220000
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhcccccCCCccCccccCCccchhhhhHHHHHHHHHhhhcCccccccCCcceeEeecc
Q 006476 417 ALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI 496 (643)
Q Consensus 417 ~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 496 (643)
.......+... .+ +...+.++.+ |.+++........+....+....+.|. .+.+++.+. ..|++|..++.+|+
T Consensus 450 ~~~~~pEi~r~-~L-~~~~L~l~~~---gi~~~~~f~~~~~p~~~~i~~a~~~L~-~lgald~~~-~lT~lG~~~a~~pl 522 (773)
T 2xau_A 450 IEQSYPEILRS-NL-SSTVLELKKL---GIDDLVHFDFMDPPAPETMMRALEELN-YLACLDDEG-NLTPLGRLASQFPL 522 (773)
T ss_dssp CSSCCCGGGGS-CC-HHHHHHHHHT---TCCCGGGCCCSSCCCHHHHHHHHHHHH-HTTSBCTTS-CBCHHHHHHTTSSS
T ss_pred cccCCCccccC-cH-HHHHHHHHHc---CCCChhhccccCCCcHHHHHHHHHHHH-HcCCcccCC-CcChhhhhhccccC
Confidence 00000011100 00 1222222232 444554444444443334444455554 355555433 36789999999999
Q ss_pred CCCCCccccCCCC
Q 006476 497 NPRLPSEYINHLE 509 (643)
Q Consensus 497 ~~~~~~~~i~~~~ 509 (643)
||.+++.++.+..
T Consensus 523 ~p~~~~~l~~~~~ 535 (773)
T 2xau_A 523 DPMLAVMLIGSFE 535 (773)
T ss_dssp CHHHHHHHHHGGG
T ss_pred CHHHHHHHHhhcc
Confidence 9999888776543
No 33
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.3e-38 Score=372.33 Aligned_cols=312 Identities=16% Similarity=0.173 Sum_probs=186.0
Q ss_pred hcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC-----CCeEEEEeccHHHHHHHHHH
Q 006476 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMVLAPTIVLAKQHFDV 158 (643)
Q Consensus 84 ~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-----g~~vlil~Pt~~La~Q~~~~ 158 (643)
-.+++.|||+|.+|++.+++ ++|+++++|||+|||++|+.|++..+.. +++++|++||++|+.|+++.
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~-------~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~ 315 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAIN-------GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNV 315 (797)
T ss_dssp -----CCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHh-------CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHH
Confidence 34467999999999999875 4789999999999999999999988876 78999999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----c-ccCccceEEeecccccchhH--H
Q 006476 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----V-VYNNLGLLVVDEEQRFGVKQ--K 230 (643)
Q Consensus 159 ~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~-~~~~l~llViDEah~~g~~~--~ 230 (643)
|++.+... ++++..++|+.+.... +..+.. .++|+|+||++|.+. + .+.++++|||||||++.... .
T Consensus 316 ~~~~~~~~-~~~v~~~~g~~~~~~~---~~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~ 390 (797)
T 4a2q_A 316 FKHHFERQ-GYSVQGISGENFSNVS---VEKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYN 390 (797)
T ss_dssp HHHHHGGG-TCCEEEECCC-----C---HHHHHH-TCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHH
T ss_pred HHHhcccC-CceEEEEeCCcchhhh---HHHhhC-CCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHH
Confidence 99876654 6899999997654432 222333 389999999988753 2 46788999999999975321 1
Q ss_pred HH----HHh----cCCCceEEEeccCCChH----------hHHHHHhcCCCcceeeCCCCC--------ccceeEEE--c
Q 006476 231 EK----IAS----FKISVDVLTLSATPIPR----------TLYLALTGFRDASLISTPPPE--------RLPIKTHL--S 282 (643)
Q Consensus 231 ~~----l~~----~~~~~~vl~lSATp~~~----------~~~~~~~~~~~~~~i~~~~~~--------~~~v~~~~--~ 282 (643)
.. +.. ..+..++++|||||... ...... ...+...+...... ..+..... .
T Consensus 391 ~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~-~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~ 469 (797)
T 4a2q_A 391 VLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLC-SYLDIQAISTVRENIQELQRFMNKPEIDVRLVK 469 (797)
T ss_dssp HHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHH-HHHTCSEEECCCTTHHHHHHHSCCCCCEEEECC
T ss_pred HHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHH-HhcCCcEEecccccHHHHHHhcCCCceEEEecC
Confidence 11 111 14568999999999531 111111 11111111111000 00000000 0
Q ss_pred ----------------------------------------c-------------------C-------------------
Q 006476 283 ----------------------------------------A-------------------F------------------- 284 (643)
Q Consensus 283 ----------------------------------------~-------------------~------------------- 284 (643)
. .
T Consensus 470 ~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 549 (797)
T 4a2q_A 470 RRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHL 549 (797)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 0 0
Q ss_pred --------------------------------------------------------------C--HHHHHHHHHHHH--h
Q 006476 285 --------------------------------------------------------------S--KEKVISAIKYEL--D 298 (643)
Q Consensus 285 --------------------------------------------------------------~--~~~~~~~i~~~l--~ 298 (643)
+ ...+...+...+ .
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~ 629 (797)
T 4a2q_A 550 RKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYN 629 (797)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccC
Confidence 0 000111122211 3
Q ss_pred cCCeEEEEecCccChHHHHHHHHhh----------CCCCcEEEEeCCCCHHHHHHHHHHHhc-CCceEEEeccccccccc
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQA----------FPGVDIAIAHGQQYSRQLEETMEKFAQ-GAIKILICTNIVESGLD 367 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~----------~p~~~v~~~hg~~~~~~r~~v~~~F~~-g~~~ILVaT~i~~~GiD 367 (643)
.+++++|||+++..++.+++.|+.. +.|.....+||+|++.+|.+++++|++ |+++|||||+++++|||
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GID 709 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGID 709 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC------
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCC
Confidence 4589999999999999999999873 124566778999999999999999999 99999999999999999
Q ss_pred ccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 368 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 368 ip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
+|++++||+||+|. ++.+|+||+|| ||. +.|.||+|+++.+
T Consensus 710 lp~v~~VI~yd~p~-s~~~~iQr~GR-GR~-~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 710 IVQCNLVVLYEYSG-NVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (797)
T ss_dssp -CCCSEEEEESCCS-CHHHHHTC---------CCCEEEEECCHH
T ss_pred chhCCEEEEeCCCC-CHHHHHHhcCC-CCC-CCceEEEEEeCCc
Confidence 99999999999996 99999999999 999 8899999998764
No 34
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.1e-38 Score=349.15 Aligned_cols=294 Identities=21% Similarity=0.233 Sum_probs=209.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHH-HHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIF-CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 189 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~-~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~ 189 (643)
+++++++||||||||++|+++++ ....++++++|++||++||.|+++.+. ++.+.+.++....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~--------- 65 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS--------- 65 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC---------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc---------
Confidence 57999999999999999998888 556778899999999999999987764 3566666553211
Q ss_pred HhcCCceEEEechHhhh----cccccCccceEEeecccccc---hhHHHHHHhc--CCCceEEEeccCCChHhHHHHHhc
Q 006476 190 IKHGHLNIIVGTHSLLG----SRVVYNNLGLLVVDEEQRFG---VKQKEKIASF--KISVDVLTLSATPIPRTLYLALTG 260 (643)
Q Consensus 190 l~~g~~dIiI~T~~~L~----~~~~~~~l~llViDEah~~g---~~~~~~l~~~--~~~~~vl~lSATp~~~~~~~~~~~ 260 (643)
.......+.+.|++.+. ....++++++|||||+|+++ ..+...+... +.+.++++|||||++....+
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~---- 141 (431)
T 2v6i_A 66 ERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAF---- 141 (431)
T ss_dssp ---CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSS----
T ss_pred cCCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhh----
Confidence 12222445666776543 34558999999999999996 3444555544 46899999999998742110
Q ss_pred CCCcceeeCCCCCccceeEEEccC---CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCC
Q 006476 261 FRDASLISTPPPERLPIKTHLSAF---SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 337 (643)
Q Consensus 261 ~~~~~~i~~~~~~~~~v~~~~~~~---~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~ 337 (643)
+..+.++....... ....+...+. ..+++++||||+++.++.+++.|+.. +.++..+||+
T Consensus 142 ----------~~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~-- 204 (431)
T 2v6i_A 142 ----------PPSNSPIIDEETRIPDKAWNSGYEWIT---EFDGRTVWFVHSIKQGAEIGTCLQKA--GKKVLYLNRK-- 204 (431)
T ss_dssp ----------CCCSSCCEEEECCCCSSCCSSCCHHHH---SCSSCEEEECSSHHHHHHHHHHHHHT--TCCEEEESTT--
T ss_pred ----------cCCCCceeeccccCCHHHHHHHHHHHH---cCCCCEEEEeCCHHHHHHHHHHHHHc--CCeEEEeCCc--
Confidence 11122222221111 1111222322 24789999999999999999999998 8999999997
Q ss_pred HHHHHHHHHHHhcCCceEEEecccccccccccCCCE-----------------EEEecCCCCCHHHHHHHHhccCCCCCc
Q 006476 338 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT-----------------IIVQDVQQFGLAQLYQLRGRVGRADKE 400 (643)
Q Consensus 338 ~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~-----------------VI~~d~p~~s~~~~~Qr~GR~GR~g~~ 400 (643)
+|++++++|++|+.+|||||+++++|+|+| +.+ ||+++.|. +.++|+||+||+||.|..
T Consensus 205 --~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~-~~~~~~Qr~GR~GR~g~~ 280 (431)
T 2v6i_A 205 --TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAI-TPASAAQRRGRIGRNPEK 280 (431)
T ss_dssp --THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEEC-CHHHHHHHHTTSSCCTTC
T ss_pred --cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccC-CHHHHHHhhhccCCCCCC
Confidence 578899999999999999999999999999 655 46677775 999999999999999855
Q ss_pred e-EEEEEecCCCCCc------HHHHHHHHHHHHHhhcccchhh----hhhhcccccCCCc
Q 006476 401 A-HAYLFYPDKSLLS------DQALERLAALEECRELGQGFQL----AEKDMGIRGFGTI 449 (643)
Q Consensus 401 g-~a~~l~~~~~~~~------~~~~~rl~~i~~~~~l~~g~~i----~~~dl~irg~g~~ 449 (643)
+ .++++..+..... ..+..++..+ ...+||.+ +.+|+.+++.|++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~~~~~~~~~~~~~~~~~ 336 (431)
T 2v6i_A 281 LGDIYAYSGNVSSDNEGHVSWTEARMLLDNV----HVQGGVVAQLYTPEREKTEAYEGEF 336 (431)
T ss_dssp CCCEEEECSCCCCCCTTBHHHHHHHHHHTTC----CCTTSCCCCCCGGGGGGCCCCTTTT
T ss_pred CCeEEEEcCCCCCccchhHHHHHHHHHHhhc----CCCCCcceeccchhhhccCCCCCce
Confidence 4 4444443322111 1344455444 44578988 7888888988876
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=8.1e-39 Score=371.09 Aligned_cols=308 Identities=21% Similarity=0.202 Sum_probs=211.5
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC------CeEEEEeccHHHHHHH-HHHH
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG------KQAMVLAPTIVLAKQH-FDVV 159 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g------~~vlil~Pt~~La~Q~-~~~~ 159 (643)
.+.|+|+|.++++.+++ ++++++++|||+|||++|+.++...+..+ ++++|++||++|+.|+ ++++
T Consensus 5 ~~~l~~~Q~~~i~~il~-------g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l 77 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALE-------GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEF 77 (699)
T ss_dssp --CCCHHHHHHHHHHHS-------SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTH
T ss_pred CCCccHHHHHHHHHHHh-------CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 57999999999999975 57899999999999999999998776443 7899999999999999 9999
Q ss_pred HHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccc-----------ccCccceEEeecccccchh
Q 006476 160 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----------VYNNLGLLVVDEEQRFGVK 228 (643)
Q Consensus 160 ~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~-----------~~~~l~llViDEah~~g~~ 228 (643)
.+.+.. ++++..++|+.+.......+ . +.++|+|+||++|.+.+ .+.++++|||||||++...
T Consensus 78 ~~~~~~--~~~v~~~~g~~~~~~~~~~~---~-~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~ 151 (699)
T 4gl2_A 78 QPFLKK--WYRVIGLSGDTQLKISFPEV---V-KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 151 (699)
T ss_dssp HHHHTT--TSCEEEEC----CCCCHHHH---H-HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTT
T ss_pred HHHcCc--CceEEEEeCCcchhhHHHhh---h-cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCcc
Confidence 986544 48999999976544322222 2 45899999999987543 5678999999999985321
Q ss_pred -----HH-----HHHHhcC---------CCceEEEeccCCChH-------hHHH--HHhcCCCcceeeCCCCC-------
Q 006476 229 -----QK-----EKIASFK---------ISVDVLTLSATPIPR-------TLYL--ALTGFRDASLISTPPPE------- 273 (643)
Q Consensus 229 -----~~-----~~l~~~~---------~~~~vl~lSATp~~~-------~~~~--~~~~~~~~~~i~~~~~~------- 273 (643)
.. ..+.... +.+++|+|||||... .... .+....+...+.+....
T Consensus 152 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~ 231 (699)
T 4gl2_A 152 AVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQ 231 (699)
T ss_dssp BSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHH
T ss_pred chHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhh
Confidence 11 1111122 678999999999862 1111 01111111111111110
Q ss_pred -ccceeEEEccC--------------------------------------------------------------------
Q 006476 274 -RLPIKTHLSAF-------------------------------------------------------------------- 284 (643)
Q Consensus 274 -~~~v~~~~~~~-------------------------------------------------------------------- 284 (643)
..|...+....
T Consensus 232 ~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (699)
T 4gl2_A 232 IQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEAL 311 (699)
T ss_dssp SCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 00110000000
Q ss_pred ----------------------------------------------------------------------CHHHHHHHHH
Q 006476 285 ----------------------------------------------------------------------SKEKVISAIK 294 (643)
Q Consensus 285 ----------------------------------------------------------------------~~~~~~~~i~ 294 (643)
....+.+.+.
T Consensus 312 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~ 391 (699)
T 4gl2_A 312 QINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIM 391 (699)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 0000112222
Q ss_pred HHHhc---CCeEEEEecCccChHHHHHHHHhh----CCCCcEEEEeCC--------CCHHHHHHHHHHHhcCCceEEEec
Q 006476 295 YELDR---GGQVFYVLPRIKGLEEPMDFLQQA----FPGVDIAIAHGQ--------QYSRQLEETMEKFAQGAIKILICT 359 (643)
Q Consensus 295 ~~l~~---~~qvlvf~~~~~~~e~l~~~L~~~----~p~~~v~~~hg~--------~~~~~r~~v~~~F~~g~~~ILVaT 359 (643)
..+.. +++++|||+++..++.+++.|+.. ..++++..+||+ |++.+|.+++++|++|+++|||||
T Consensus 392 ~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT 471 (699)
T 4gl2_A 392 EQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIAT 471 (699)
T ss_dssp HHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEE
T ss_pred HHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEc
Confidence 22222 789999999999999999999875 126789999999 999999999999999999999999
Q ss_pred ccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCC
Q 006476 360 NIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 360 ~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~ 410 (643)
+++++|||+|++++||++|.|. ++.+|+||+||+||.| +.++++++.+
T Consensus 472 ~~~~~GIDip~v~~VI~~d~p~-s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 472 TVAEEGLDIKECNIVIRYGLVT-NEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp CSCCTTSCCCSCCCCEEESCCC-CHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred cccccCCccccCCEEEEeCCCC-CHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 9999999999999999999996 9999999999987765 4444444444
No 36
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=5.7e-38 Score=373.98 Aligned_cols=308 Identities=24% Similarity=0.306 Sum_probs=233.1
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHH
Q 006476 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 158 (643)
Q Consensus 79 ~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~ 158 (643)
...+...++|+|+|+|.+||+.+++ ++|++++||||||||++|+.++......+++++|++||++|+.|++++
T Consensus 29 ~~~~~~~~~f~l~~~Q~~aI~~il~-------g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~ 101 (997)
T 4a4z_A 29 IPNPARSWPFELDTFQKEAVYHLEQ-------GDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRD 101 (997)
T ss_dssp CSSCSCCCSSCCCHHHHHHHHHHHT-------TCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHH
T ss_pred hHhHHHhCCCCCCHHHHHHHHHHHc-------CCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 3446678899999999999999875 579999999999999999999998888999999999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEeeccccc-----chh
Q 006476 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRF-----GVK 228 (643)
Q Consensus 159 ~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViDEah~~-----g~~ 228 (643)
+++.+. +++++.++|+.+. +++++|+|+||++|.+. ..+.++++|||||||++ +..
T Consensus 102 l~~~~~---~~~v~~l~G~~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~ 167 (997)
T 4a4z_A 102 FKETFD---DVNIGLITGDVQI-----------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVV 167 (997)
T ss_dssp HHTTC-----CCEEEECSSCEE-----------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCC
T ss_pred HHHHcC---CCeEEEEeCCCcc-----------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHH
Confidence 987543 5789999996542 24589999999988642 34688999999999985 344
Q ss_pred HHHHHHhcCCCceEEEeccCCChHhHHHHHhc-C--CCcceeeCCCCCccceeEEEcc-------------C--------
Q 006476 229 QKEKIASFKISVDVLTLSATPIPRTLYLALTG-F--RDASLISTPPPERLPIKTHLSA-------------F-------- 284 (643)
Q Consensus 229 ~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~-~--~~~~~i~~~~~~~~~v~~~~~~-------------~-------- 284 (643)
..+.+..+++++++|++|||++.......+.+ . .+..++.+ +....|+..++.. +
T Consensus 168 ~e~ii~~l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~-~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 246 (997)
T 4a4z_A 168 WEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVIST-PKRPVPLEINIWAKKELIPVINQNSEFLEANFRKH 246 (997)
T ss_dssp HHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEEC-SSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHH
T ss_pred HHHHHHhcccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEec-CCCCccceEEEecCCcchhcccchhhhhHHHHHHH
Confidence 45667778889999999999854432211111 1 22222222 2222333322210 0
Q ss_pred ------------------------------------------------------------------------CHHHHHHH
Q 006476 285 ------------------------------------------------------------------------SKEKVISA 292 (643)
Q Consensus 285 ------------------------------------------------------------------------~~~~~~~~ 292 (643)
........
T Consensus 247 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (997)
T 4a4z_A 247 KEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPE 326 (997)
T ss_dssp HHHHC-----------------------------------------------------------------CCCCTTHHHH
T ss_pred HHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHH
Confidence 00011233
Q ss_pred HHHHHhc--CCeEEEEecCccChHHHHHHHHhhCC-------------------------------------CCcEEEEe
Q 006476 293 IKYELDR--GGQVFYVLPRIKGLEEPMDFLQQAFP-------------------------------------GVDIAIAH 333 (643)
Q Consensus 293 i~~~l~~--~~qvlvf~~~~~~~e~l~~~L~~~~p-------------------------------------~~~v~~~h 333 (643)
+...+.. .++++|||++++.|+.++..|....- ..++.++|
T Consensus 327 li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H 406 (997)
T 4a4z_A 327 IVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHH 406 (997)
T ss_dssp HHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeec
Confidence 3344433 36999999999999999998865310 22689999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCC--------CHHHHHHHHhccCCCC--CceEE
Q 006476 334 GQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF--------GLAQLYQLRGRVGRAD--KEAHA 403 (643)
Q Consensus 334 g~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~--------s~~~~~Qr~GR~GR~g--~~g~a 403 (643)
|+|++.+|+.+++.|.+|.++|||||+++++|||+|+ .+||+++.+.| +..+|+||+|||||.| ..|.|
T Consensus 407 ~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~v 485 (997)
T 4a4z_A 407 GGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTV 485 (997)
T ss_dssp TTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEE
Confidence 9999999999999999999999999999999999999 66666555433 8999999999999987 67999
Q ss_pred EEEecC
Q 006476 404 YLFYPD 409 (643)
Q Consensus 404 ~~l~~~ 409 (643)
|+++..
T Consensus 486 i~l~~~ 491 (997)
T 4a4z_A 486 IVMAYN 491 (997)
T ss_dssp EEECCS
T ss_pred EEecCC
Confidence 999853
No 37
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=5.1e-37 Score=349.81 Aligned_cols=303 Identities=19% Similarity=0.224 Sum_probs=224.6
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCC
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 166 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~ 166 (643)
.+.|||+|..+++.++. |+ |++++||+|||++|.+|++.....|++|+||+||++||.|.++.+...+ .+
T Consensus 81 G~~pt~VQ~~~ip~ll~-------G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~-~~ 150 (844)
T 1tf5_A 81 GMFPFKVQLMGGVALHD-------GN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIF-EF 150 (844)
T ss_dssp SCCCCHHHHHHHHHHHT-------TS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHH-HH
T ss_pred CCCCcHHHHHhhHHHhC-------CC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHH-hh
Confidence 34999999999999875 33 9999999999999999998665678999999999999999999998744 44
Q ss_pred CCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhh-----hcc-------cccCccceEEeecccccc--------
Q 006476 167 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSR-------VVYNNLGLLVVDEEQRFG-------- 226 (643)
Q Consensus 167 ~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L-----~~~-------~~~~~l~llViDEah~~g-------- 226 (643)
.|++++++.|+.+...+.... + +||+||||++| .+. +.++.+.++||||||++.
T Consensus 151 lgl~v~~i~gg~~~~~r~~~~-----~-~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDEKREAY-----A-ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp TTCCEEECCTTSCHHHHHHHH-----H-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred cCCeEEEEeCCCCHHHHHHhc-----C-CCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 589999999988765543322 3 89999999998 333 345788999999999963
Q ss_pred -----------h--hHHHHHHhcC---------CCceEE-----------------EeccCCCh--HhHHHH---HhcC-
Q 006476 227 -----------V--KQKEKIASFK---------ISVDVL-----------------TLSATPIP--RTLYLA---LTGF- 261 (643)
Q Consensus 227 -----------~--~~~~~l~~~~---------~~~~vl-----------------~lSATp~~--~~~~~~---~~~~- 261 (643)
+ .....+..++ ...+++ ++|||.+. .....+ ...+
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 1 1123344554 356776 78999542 111111 1111
Q ss_pred CCcc----------------------------------------------------------------------------
Q 006476 262 RDAS---------------------------------------------------------------------------- 265 (643)
Q Consensus 262 ~~~~---------------------------------------------------------------------------- 265 (643)
++..
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~ 384 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEF 384 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHH
Confidence 0000
Q ss_pred -------eeeCCCCCccce----eEEEccCCHHHHHHHHHHH----HhcCCeEEEEecCccChHHHHHHHHhhCCCCcEE
Q 006476 266 -------LISTPPPERLPI----KTHLSAFSKEKVISAIKYE----LDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIA 330 (643)
Q Consensus 266 -------~i~~~~~~~~~v----~~~~~~~~~~~~~~~i~~~----l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~ 330 (643)
++.+| .++... ...+. .+......++... ...+.++||||++++.++.++..|... ++++.
T Consensus 385 ~~iY~l~vv~IP-tn~p~~r~d~~d~v~-~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~--gi~~~ 460 (844)
T 1tf5_A 385 RNIYNMQVVTIP-TNRPVVRDDRPDLIY-RTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNK--GIPHQ 460 (844)
T ss_dssp HHHHCCCEEECC-CSSCCCCEECCCEEE-SSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTT--TCCCE
T ss_pred HHHhCCceEEec-CCCCcccccCCcEEE-eCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC--CCCEE
Confidence 00111 110000 00111 1233333444333 345778999999999999999999998 89999
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCceEEEeccccccccccc--------CCCEEEEecCCCCCHHHHHHHHhccCCCCCceE
Q 006476 331 IAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ--------NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAH 402 (643)
Q Consensus 331 ~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip--------~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~ 402 (643)
++||++++.+++.+.+.|+.| .|+|||++++||+||+ ++.+||+++.|. +...|.||+||+||.|++|.
T Consensus 461 vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~-s~r~y~hr~GRTGRqG~~G~ 537 (844)
T 1tf5_A 461 VLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHE-SRRIDNQLRGRSGRQGDPGI 537 (844)
T ss_dssp EECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCS-SHHHHHHHHTTSSGGGCCEE
T ss_pred EeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCC-CHHHHHhhcCccccCCCCCe
Confidence 999999888887666666655 6999999999999999 788999999998 99999999999999999999
Q ss_pred EEEEecCCCC
Q 006476 403 AYLFYPDKSL 412 (643)
Q Consensus 403 a~~l~~~~~~ 412 (643)
+++|++.++.
T Consensus 538 s~~~vs~eD~ 547 (844)
T 1tf5_A 538 TQFYLSMEDE 547 (844)
T ss_dssp EEEEEETTSS
T ss_pred EEEEecHHHH
Confidence 9999997765
No 38
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=4.2e-39 Score=368.53 Aligned_cols=320 Identities=20% Similarity=0.199 Sum_probs=218.7
Q ss_pred CCCHHHH-----HHHHHhHH-hhccCCCCCcEEEEccCCCchHHHHHHHHHHH-HHCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 89 EPTPDQK-----KAFLDVER-DLTERETPMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 89 ~~tp~Q~-----~ai~~i~~-~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~-~~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
.|||+|. ++|+.++. ++ -..++|++++||||||||++|+++++.. ..++.+++|++||++||.|+++.+..
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~--l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEM--LKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp EEEEEECC-------CCCCCGGG--GSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT
T ss_pred ccCceeeccccccchHHHhhHHH--HhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhc
Confidence 7999999 99988761 11 1247899999999999999999998876 45678999999999999999988763
Q ss_pred HhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhh----hcccccCccceEEeecccccchh---HHHHHH
Q 006476 162 RFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL----GSRVVYNNLGLLVVDEEQRFGVK---QKEKIA 234 (643)
Q Consensus 162 ~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L----~~~~~~~~l~llViDEah~~g~~---~~~~l~ 234 (643)
+ ++. ...+. +..+.....-+-+.+.+.+ .....++++++|||||||+++.. ....+.
T Consensus 293 -~----~i~--~~~~~---------l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~ 356 (673)
T 2wv9_A 293 -L----PVR--YLTPA---------VQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIA 356 (673)
T ss_dssp -S----CCE--ECCC------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHH
T ss_pred -C----Cee--eeccc---------ccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHH
Confidence 2 222 21110 0001111111222232222 12346789999999999998442 233333
Q ss_pred hc--CCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCccceeEEEccCCHHHHHHHHHHHHhcCCeEEEEecCccC
Q 006476 235 SF--KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 312 (643)
Q Consensus 235 ~~--~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~i~~~l~~~~qvlvf~~~~~~ 312 (643)
.. ..+.++++|||||++.... .+....++...........+...+......+++++||||+++.
T Consensus 357 ~~~~~~~~~vl~~SAT~~~~i~~--------------~~~~~~~i~~v~~~~~~~~~~~~l~~l~~~~~~~lVF~~s~~~ 422 (673)
T 2wv9_A 357 TRVEAGEAAAIFMTATPPGTSDP--------------FPDTNSPVHDVSSEIPDRAWSSGFEWITDYAGKTVWFVASVKM 422 (673)
T ss_dssp HHHHTTSCEEEEECSSCTTCCCS--------------SCCCSSCEEEEECCCCSSCCSSCCHHHHSCCSCEEEECSSHHH
T ss_pred HhccccCCcEEEEcCCCChhhhh--------------hcccCCceEEEeeecCHHHHHHHHHHHHhCCCCEEEEECCHHH
Confidence 33 2679999999999765221 1111223322222111111111122223468899999999999
Q ss_pred hHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEE----------------
Q 006476 313 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV---------------- 376 (643)
Q Consensus 313 ~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~---------------- 376 (643)
++.+++.|+.. ++++..+||+ +|+++++.|++|+.+|||||+++++|||+| +++||+
T Consensus 423 ~e~la~~L~~~--g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r 495 (673)
T 2wv9_A 423 SNEIAQCLQRA--GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGR 495 (673)
T ss_dssp HHHHHHHHHTT--TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCE
T ss_pred HHHHHHHHHhC--CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeeccccc
Confidence 99999999988 8999999994 789999999999999999999999999999 999998
Q ss_pred ----ecCCCCCHHHHHHHHhccCCC-CCceEEEEEe---cCCCCCcHHHHHHHHHHHHHhhcccchhhhhhhcccccCCC
Q 006476 377 ----QDVQQFGLAQLYQLRGRVGRA-DKEAHAYLFY---PDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 448 (643)
Q Consensus 377 ----~d~p~~s~~~~~Qr~GR~GR~-g~~g~a~~l~---~~~~~~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~ 448 (643)
++.|. +.++|+||+||+||. |+.|.||+|+ ++++.......+....+... ++..||.++..+.+.++.++
T Consensus 496 ~~ll~d~P~-s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~-~~~~g~~~a~~~~~q~~~~~ 573 (673)
T 2wv9_A 496 VILSVPSAI-TSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNI-HLPNGLVAQLYGPERDKTYT 573 (673)
T ss_dssp EEECCSEEC-CHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTS-CBTTTBCCCCCGGGGGGCCC
T ss_pred ceecccCCC-CHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhc-cCCchhhhhccchhhhcccc
Confidence 45665 889999999999999 7899999996 45544333334433333333 56778888776766665554
Q ss_pred c
Q 006476 449 I 449 (643)
Q Consensus 449 ~ 449 (643)
+
T Consensus 574 ~ 574 (673)
T 2wv9_A 574 M 574 (673)
T ss_dssp C
T ss_pred c
Confidence 4
No 39
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=6.9e-39 Score=351.65 Aligned_cols=290 Identities=17% Similarity=0.227 Sum_probs=199.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 189 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~ 189 (643)
++|++++||||||||++|++|++..+ .++.+++|++||++||.|+++.+.. +.+....+..
T Consensus 8 g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~-------~~v~~~~~~~----------- 69 (440)
T 1yks_A 8 GMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHG-------LDVKFHTQAF----------- 69 (440)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-------SCEEEESSCC-----------
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhc-------CCeEEecccc-----------
Confidence 78999999999999999999988754 5677999999999999999988763 3343322211
Q ss_pred HhcCCceEEEechHhhhc-------------ccccCccceEEeecccccchhH---HHHHHh--cCCCceEEEeccCCCh
Q 006476 190 IKHGHLNIIVGTHSLLGS-------------RVVYNNLGLLVVDEEQRFGVKQ---KEKIAS--FKISVDVLTLSATPIP 251 (643)
Q Consensus 190 l~~g~~dIiI~T~~~L~~-------------~~~~~~l~llViDEah~~g~~~---~~~l~~--~~~~~~vl~lSATp~~ 251 (643)
. .++||+.+.+ ...++++++||+||+|++.... ...+.. .+.+.++++|||||++
T Consensus 70 ------~-~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~ 142 (440)
T 1yks_A 70 ------S-AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPPG 142 (440)
T ss_dssp ------C-CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTT
T ss_pred ------e-eccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhccCCceEEEEeCCCCc
Confidence 0 2566654432 2347899999999999982211 111111 1367999999999987
Q ss_pred HhHHHHHhcCCCcceeeCCCCCccceeEEEccCCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEE
Q 006476 252 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAI 331 (643)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~ 331 (643)
+...+... ...+ ..+...+.......+...+ ...+++++||||+++.++.+++.|+.. ++++..
T Consensus 143 ~~~~~~~~---~~~~--------~~~~~~~~~~~~~~~~~~l---~~~~~~~lVF~~s~~~a~~l~~~L~~~--~~~v~~ 206 (440)
T 1yks_A 143 TSDEFPHS---NGEI--------EDVQTDIPSEPWNTGHDWI---LADKRPTAWFLPSIRAANVMAASLRKA--GKSVVV 206 (440)
T ss_dssp CCCSSCCC---SSCE--------EEEECCCCSSCCSSSCHHH---HHCCSCEEEECSCHHHHHHHHHHHHHT--TCCEEE
T ss_pred hhhhhhhc---CCCe--------eEeeeccChHHHHHHHHHH---HhcCCCEEEEeCCHHHHHHHHHHHHHc--CCCEEE
Confidence 74322110 0000 0000001111111122222 235789999999999999999999998 899999
Q ss_pred EeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEE-------------------ecCCCCCHHHHHHHHh
Q 006476 332 AHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV-------------------QDVQQFGLAQLYQLRG 392 (643)
Q Consensus 332 ~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~-------------------~d~p~~s~~~~~Qr~G 392 (643)
+|| .+|++++++|++|+.+|||||+++++|+|+| +++||+ ++.|. +.++|+||+|
T Consensus 207 lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~-~~~~~~Qr~G 280 (440)
T 1yks_A 207 LNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRI-SASSAAQRRG 280 (440)
T ss_dssp CCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEEC-CHHHHHHHHT
T ss_pred ecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccccc-CHHHHHHhcc
Confidence 999 3688999999999999999999999999999 999996 77785 9999999999
Q ss_pred ccCCC-CCceEEEEEe---cCCCCCcHHHHHHHHHHHHHhhcccchhhhhhhcccccCCCccCccccCCcc
Q 006476 393 RVGRA-DKEAHAYLFY---PDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVG 459 (643)
Q Consensus 393 R~GR~-g~~g~a~~l~---~~~~~~~~~~~~rl~~i~~~~~l~~g~~i~~~dl~irg~g~~lg~~q~g~~~ 459 (643)
|+||. |+.|.||+++ ++++.. ++..++. .+.++..++..++.+++++..|++...
T Consensus 281 R~GR~g~~~g~~~~l~~~~~~~~~~------~l~~l~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~ 339 (440)
T 1yks_A 281 RIGRNPNRDGDSYYYSEPTSENNAH------HVCWLEA------SMLLDNMEVRGGMVAPLYGVEGTKTPV 339 (440)
T ss_dssp TSSCCTTCCCEEEEECSCCCCCCTT------BHHHHHH------HHHHTTSCCGGGCCCCCSTTHHHHSSS
T ss_pred ccCCCCCCCceEEEEeccCChhhhh------hhhhhhH------HhccccccccccccccccchhhccCCC
Confidence 99997 7899999997 344332 2223332 245667777778888888888766443
No 40
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.5e-38 Score=350.29 Aligned_cols=299 Identities=21% Similarity=0.201 Sum_probs=216.2
Q ss_pred CCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 86 ~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
+++.|+|+|.+|++.+++ +++.++++|||+|||++|+.++... +++++|++||++|+.||+++|.+ |
T Consensus 90 ~~~~l~~~Q~~ai~~i~~-------~~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~-~-- 156 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLV-------DKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-F-- 156 (472)
T ss_dssp CCCCBCHHHHHHHHHHTT-------TTEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGG-G--
T ss_pred CCCCcCHHHHHHHHHHHh-------cCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHh-C--
Confidence 468999999999998865 3579999999999999999988766 78999999999999999999987 5
Q ss_pred CCCce-EEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccc-c-CccceEEeecccccchhHHHHHHhcCCCceE
Q 006476 166 YPDIK-VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-Y-NNLGLLVVDEEQRFGVKQKEKIASFKISVDV 242 (643)
Q Consensus 166 ~~~i~-v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~-~-~~l~llViDEah~~g~~~~~~l~~~~~~~~v 242 (643)
+++ ++.++|+... ..+|+|+||+.+..... + +++++|||||||++.......+....+..++
T Consensus 157 --~~~~v~~~~g~~~~-------------~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~~~~~~~~~~~~~~~~ 221 (472)
T 2fwr_A 157 --GEEYVGEFSGRIKE-------------LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFR 221 (472)
T ss_dssp --CGGGEEEBSSSCBC-------------CCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTSTTTHHHHHTCCCSEE
T ss_pred --CCcceEEECCCcCC-------------cCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCChHHHHHHHhcCCCeE
Confidence 578 8888886532 37899999998876442 2 5699999999999865544455555577899
Q ss_pred EEeccCCChHh------------------HHHHHhc-CCCccee--eCC--CCC------------------------cc
Q 006476 243 LTLSATPIPRT------------------LYLALTG-FRDASLI--STP--PPE------------------------RL 275 (643)
Q Consensus 243 l~lSATp~~~~------------------~~~~~~~-~~~~~~i--~~~--~~~------------------------~~ 275 (643)
+++||||.... ....... +.+.... ... +.. ..
T Consensus 222 l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (472)
T 2fwr_A 222 LGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE 301 (472)
T ss_dssp EEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS
T ss_pred EEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh
Confidence 99999997311 1111111 1111110 000 000 00
Q ss_pred ceeEEEcc---------------------CCHHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEE
Q 006476 276 PIKTHLSA---------------------FSKEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 332 (643)
Q Consensus 276 ~v~~~~~~---------------------~~~~~~~~~i~~~l--~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~ 332 (643)
.+...+.. .........+...+ ..+++++|||++++.++.+++.|. +..+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-------~~~~ 374 (472)
T 2fwr_A 302 DFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-------IPAI 374 (472)
T ss_dssp SSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-------CCBC
T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-------ccee
Confidence 00000000 00001112222222 357899999999999888888773 4578
Q ss_pred eCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCC---ceEEEEEecC
Q 006476 333 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK---EAHAYLFYPD 409 (643)
Q Consensus 333 hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~---~g~a~~l~~~ 409 (643)
||+++..+|++++++|++|+.+|||||+++++|+|+|++++||+++.|. ++.+|.||+||+||.|+ .+.+|.+++.
T Consensus 375 ~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~-s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 375 THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSG-SAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSS-CCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCC-CHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 9999999999999999999999999999999999999999999999996 99999999999999973 4577778888
Q ss_pred CCCCcHHHHHH
Q 006476 410 KSLLSDQALER 420 (643)
Q Consensus 410 ~~~~~~~~~~r 420 (643)
+.........|
T Consensus 454 ~t~ee~~~~~r 464 (472)
T 2fwr_A 454 GTGEVNTARRR 464 (472)
T ss_dssp SCC--------
T ss_pred CCchHHHHHHH
Confidence 77655444444
No 41
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.4e-37 Score=373.52 Aligned_cols=278 Identities=17% Similarity=0.147 Sum_probs=201.0
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHH-HHCCCeEEEEeccHHHHHHHHH
Q 006476 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHFD 157 (643)
Q Consensus 79 ~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~-~~~g~~vlil~Pt~~La~Q~~~ 157 (643)
.+.|.+.++|.| |+|.+||+.+++ ++|++++||||||||+ |.+|++.. ...+++++|++||++||.|+++
T Consensus 47 ~~~~~~~~g~~p-~iQ~~ai~~il~-------g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 47 VEFFRKCVGEPR-AIQKMWAKRILR-------KESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp HHHHHTTTCSCC-HHHHHHHHHHHT-------TCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHH
T ss_pred HHHHHHhcCCCH-HHHHHHHHHHHh-------CCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHH
Confidence 355666677788 999999999975 5899999999999998 65555544 4568899999999999999999
Q ss_pred HHHHHhcCCCCc----eEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccc-cCccceEEeecccccch---hH
Q 006476 158 VVSERFSKYPDI----KVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-YNNLGLLVVDEEQRFGV---KQ 229 (643)
Q Consensus 158 ~~~~~~~~~~~i----~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~-~~~l~llViDEah~~g~---~~ 229 (643)
.+.+.+... ++ +++.++|+.+...+...+..+.+ ++|+|+||++|.+.+. ++++++|||||||++.. ..
T Consensus 118 ~l~~l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l~~lViDEah~~l~~~~~~ 194 (1054)
T 1gku_B 118 TIRKYAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNV 194 (1054)
T ss_dssp HHHHHHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCCSEEEESCHHHHHTSTHHH
T ss_pred HHHHHHhhc-CCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccCCEEEEeChhhhhhccccH
Confidence 999865544 67 89999999888777667777766 8999999999987554 67899999999999643 22
Q ss_pred HHHHHhc-----------CCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCC--CccceeEEEccCC-HHHHHHHHHH
Q 006476 230 KEKIASF-----------KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP--ERLPIKTHLSAFS-KEKVISAIKY 295 (643)
Q Consensus 230 ~~~l~~~-----------~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~--~~~~v~~~~~~~~-~~~~~~~i~~ 295 (643)
...+..+ +...|++++|||+++. .......+.++..+...+. ....+...+.... ...+...+..
T Consensus 195 ~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~~~L~~ll~~ 273 (1054)
T 1gku_B 195 DKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESISTLSSILEK 273 (1054)
T ss_dssp HHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCCCTTTTHHHHTT
T ss_pred HHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEechhHHHHHHHHHhh
Confidence 2333332 3567889999998665 2111011111111111111 1122333333222 1222222221
Q ss_pred HHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEe----cccccccccccCC
Q 006476 296 ELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILIC----TNIVESGLDIQNA 371 (643)
Q Consensus 296 ~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVa----T~i~~~GiDip~v 371 (643)
.+++++|||++++.++.+++.|+.. +++..+||++ +.++++|++|+.+|||| |+++++|||+|+|
T Consensus 274 ---~~~~~LVF~~t~~~a~~l~~~L~~~---~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~V 342 (1054)
T 1gku_B 274 ---LGTGGIIYARTGEEAEEIYESLKNK---FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPER 342 (1054)
T ss_dssp ---SCSCEEEEESSHHHHHHHHHTTTTS---SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTT
T ss_pred ---cCCCEEEEEcCHHHHHHHHHHHhhc---cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCc
Confidence 2689999999999999999999876 7899999998 47889999999999999 9999999999995
Q ss_pred -CEEEEecCC
Q 006476 372 -NTIIVQDVQ 380 (643)
Q Consensus 372 -~~VI~~d~p 380 (643)
++||++|.|
T Consensus 343 I~~VI~~~~P 352 (1054)
T 1gku_B 343 IRFAVFVGCP 352 (1054)
T ss_dssp CCEEEEESCC
T ss_pred ccEEEEeCCC
Confidence 999999999
No 42
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=5.4e-37 Score=365.22 Aligned_cols=312 Identities=16% Similarity=0.163 Sum_probs=184.8
Q ss_pred hcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC-----CCeEEEEeccHHHHHHHHHH
Q 006476 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMVLAPTIVLAKQHFDV 158 (643)
Q Consensus 84 ~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-----g~~vlil~Pt~~La~Q~~~~ 158 (643)
-.+++.|+|+|.+|++.+++ +.|+++++|||+|||++|+.+++..+.. +++++|++||++|+.|++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~-------g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~ 315 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAIN-------GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNV 315 (936)
T ss_dssp -----CCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHc-------CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHH
Confidence 34467999999999999965 5789999999999999999999887765 77899999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----c-ccCccceEEeecccccchh--HH
Q 006476 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----V-VYNNLGLLVVDEEQRFGVK--QK 230 (643)
Q Consensus 159 ~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~-~~~~l~llViDEah~~g~~--~~ 230 (643)
|++.+... ++++..++|+.+..... ..+.. .++|+|+||++|.+. + .+.++++|||||||++... ..
T Consensus 316 ~~~~~~~~-~~~v~~~~G~~~~~~~~---~~~~~-~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~ 390 (936)
T 4a2w_A 316 FKHHFERQ-GYSVQGISGENFSNVSV---EKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYN 390 (936)
T ss_dssp HHHHHHTT-TCCEEEECCC-----CC---HHHHH-HCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHH
T ss_pred HHHHhccc-CceEEEEECCcchhhHH---HHhcc-CCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHH
Confidence 99866554 68999999976543321 12222 389999999998753 2 4677899999999997432 11
Q ss_pred HHH----Hh----cCCCceEEEeccCCChH----------hHHHHHhcCCCcceeeCCCCC--------ccceeEEE--c
Q 006476 231 EKI----AS----FKISVDVLTLSATPIPR----------TLYLALTGFRDASLISTPPPE--------RLPIKTHL--S 282 (643)
Q Consensus 231 ~~l----~~----~~~~~~vl~lSATp~~~----------~~~~~~~~~~~~~~i~~~~~~--------~~~v~~~~--~ 282 (643)
..+ .. ..+..++++|||||... ...... ...+...+...... ..+..... .
T Consensus 391 ~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~-~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 469 (936)
T 4a2w_A 391 VLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLC-SYLDIQAISTVRENIQELQRFMNKPEIDVRLVK 469 (936)
T ss_dssp HHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHH-HHHTCSEEECCCSSHHHHHHHSCCCCEEEEECC
T ss_pred HHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHH-HhcCCceeecccccHHHHHHhccCCcceEEecc
Confidence 111 11 14568999999999531 111100 01111111111000 00000000 0
Q ss_pred ----------------------------------------c-------------------CC------------------
Q 006476 283 ----------------------------------------A-------------------FS------------------ 285 (643)
Q Consensus 283 ----------------------------------------~-------------------~~------------------ 285 (643)
. ..
T Consensus 470 ~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l 549 (936)
T 4a2w_A 470 RRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHL 549 (936)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 0 00
Q ss_pred -------------------------------------------------------------HHHHHHHHHHHH------h
Q 006476 286 -------------------------------------------------------------KEKVISAIKYEL------D 298 (643)
Q Consensus 286 -------------------------------------------------------------~~~~~~~i~~~l------~ 298 (643)
.......+...+ .
T Consensus 550 ~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~ 629 (936)
T 4a2w_A 550 RKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYN 629 (936)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccC
Confidence 000011111122 2
Q ss_pred cCCeEEEEecCccChHHHHHHHHhh----------CCCCcEEEEeCCCCHHHHHHHHHHHhc-CCceEEEeccccccccc
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQA----------FPGVDIAIAHGQQYSRQLEETMEKFAQ-GAIKILICTNIVESGLD 367 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~----------~p~~~v~~~hg~~~~~~r~~v~~~F~~-g~~~ILVaT~i~~~GiD 367 (643)
.+++++|||+++..++.+++.|... +.|.....+||+|++.+|.+++++|++ |+++|||||+++++|||
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGID 709 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGID 709 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCc
Confidence 3589999999999999999999875 224556677999999999999999999 99999999999999999
Q ss_pred ccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 368 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 368 ip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
+|++++||++|+|. ++.+|+||+|| ||. +.|.+|++++..+
T Consensus 710 lp~v~~VI~yD~p~-s~~~~iQr~GR-GR~-~~g~vi~Li~~~t 750 (936)
T 4a2w_A 710 IVQCNLVVLYEYSG-NVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (936)
T ss_dssp CCCCSEEEEESCCS-CSHHHHCC---------CCCEEEEESCHH
T ss_pred chhCCEEEEeCCCC-CHHHHHHhcCC-CCC-CCCEEEEEEeCCC
Confidence 99999999999996 99999999999 999 7899999987753
No 43
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.6e-35 Score=334.96 Aligned_cols=305 Identities=20% Similarity=0.186 Sum_probs=212.1
Q ss_pred CCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 86 ~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
....|||+|..+++.++. |+ ++.++||+|||++|.+|++.....|++++|++||++||.|+++.+...+.
T Consensus 71 lg~~p~~VQ~~~i~~ll~-------G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~- 140 (853)
T 2fsf_A 71 FGMRHFDVQLLGGMVLNE-------RC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFE- 140 (853)
T ss_dssp HSCCCCHHHHHHHHHHHS-------SE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHH-
T ss_pred cCCCCChHHHhhcccccC-------Ce--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHH-
Confidence 456999999999998864 22 99999999999999999987667789999999999999999999987544
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhh-----cc-------cccCccceEEeecccccch------
Q 006476 166 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-----SR-------VVYNNLGLLVVDEEQRFGV------ 227 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~-----~~-------~~~~~l~llViDEah~~g~------ 227 (643)
+.++++++++|+.+...+.. ..+ +||+||||++|. +. +.+++++++|+||||++..
T Consensus 141 ~lgl~v~~i~GG~~~~~r~~-----~~~-~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tp 214 (853)
T 2fsf_A 141 FLGLTVGINLPGMPAPAKRE-----AYA-ADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTP 214 (853)
T ss_dssp HTTCCEEECCTTCCHHHHHH-----HHH-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCE
T ss_pred hcCCeEEEEeCCCCHHHHHH-----hcC-CCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccc
Confidence 44899999999887644332 223 899999999982 22 3458899999999998631
Q ss_pred ---------------hHHHHHHhcCC--------------------CceEE------------------------EeccC
Q 006476 228 ---------------KQKEKIASFKI--------------------SVDVL------------------------TLSAT 248 (643)
Q Consensus 228 ---------------~~~~~l~~~~~--------------------~~~vl------------------------~lSAT 248 (643)
.....+..++. ..+++ ++|||
T Consensus 215 LIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat 294 (853)
T 2fsf_A 215 LIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPA 294 (853)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred ccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcc
Confidence 11122333322 33443 78888
Q ss_pred CChH--hHHHHH---h---------------------------------cCCC---------------------------
Q 006476 249 PIPR--TLYLAL---T---------------------------------GFRD--------------------------- 263 (643)
Q Consensus 249 p~~~--~~~~~~---~---------------------------------~~~~--------------------------- 263 (643)
.++. ....++ . |+..
T Consensus 295 ~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr 374 (853)
T 2fsf_A 295 NIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFR 374 (853)
T ss_dssp --------------------------------------------------------------CCCCCEEEEEEEHHHHHT
T ss_pred cchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHh
Confidence 5321 110000 0 0000
Q ss_pred ------------------------cceeeCCCCCc---cceeEEEccCCHHHHHHHHHHHH----hcCCeEEEEecCccC
Q 006476 264 ------------------------ASLISTPPPER---LPIKTHLSAFSKEKVISAIKYEL----DRGGQVFYVLPRIKG 312 (643)
Q Consensus 264 ------------------------~~~i~~~~~~~---~~v~~~~~~~~~~~~~~~i~~~l----~~~~qvlvf~~~~~~ 312 (643)
..++.+|+... ......+ ..+......++...+ ..+.++||||++++.
T Consensus 375 ~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v-~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~ 453 (853)
T 2fsf_A 375 LYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLV-YMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEK 453 (853)
T ss_dssp TSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEE-ESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHH
T ss_pred hhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEE-EeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHH
Confidence 00111111100 0000011 123344444444433 456789999999999
Q ss_pred hHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCC---------------------
Q 006476 313 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA--------------------- 371 (643)
Q Consensus 313 ~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v--------------------- 371 (643)
++.+++.|+.. ++++.++||++++.+++.+.++|+.| .|+|||++++||+||+..
T Consensus 454 se~Ls~~L~~~--gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~ 529 (853)
T 2fsf_A 454 SELVSNELTKA--GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKI 529 (853)
T ss_dssp HHHHHHHHHHT--TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHH
T ss_pred HHHHHHHHHHC--CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHH
Confidence 99999999998 89999999999888888888889888 699999999999999973
Q ss_pred ----------------CEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCC
Q 006476 372 ----------------NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 372 ----------------~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~ 412 (643)
.+||+++.|. +...|.||+||+||.|++|.+++|++.++.
T Consensus 530 ~~~~~~~~~~V~~~GGl~VI~te~pe-s~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 530 KADWQVRHDAVLEAGGLHIIGTERHE-SRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHHHHTTSEEEEESSCCS-SHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHHhhhhhhHHHhcCCcEEEEccCCC-CHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999998 999999999999999999999999987654
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=5.8e-37 Score=337.60 Aligned_cols=279 Identities=19% Similarity=0.229 Sum_probs=203.3
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHH-HHCCCeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~-~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
..+++|+|+ +|+.+++ . ...++++||||||||++|+.|++.. ...+.+++|++||++||.|+++.+.
T Consensus 2 ~~q~~~iq~-~i~~~l~---~---~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~----- 69 (451)
T 2jlq_A 2 SAMGEPDYE-VDEDIFR---K---KRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR----- 69 (451)
T ss_dssp CCCCSCCCC-CCGGGGS---T---TCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-----
T ss_pred CCCCCCcHH-HHHHHHh---c---CCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc-----
Confidence 458899985 7887764 1 2345999999999999998888754 5568899999999999999998774
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc----ccccCccceEEeecccccchhH---HHHH--Hhc
Q 006476 166 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRFGVKQ---KEKI--ASF 236 (643)
Q Consensus 166 ~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~----~~~~~~l~llViDEah~~g~~~---~~~l--~~~ 236 (643)
+..+....+.... ...+...|.++|++.+.+ ...++++++|||||||++.... ...+ ...
T Consensus 70 --g~~v~~~~~~~~~---------~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~ 138 (451)
T 2jlq_A 70 --GLPIRYQTPAVKS---------DHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE 138 (451)
T ss_dssp --TSCEEECCTTCSC---------CCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHHH
T ss_pred --Cceeeeeeccccc---------cCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhhc
Confidence 3444433332111 112346788999987653 3457899999999999873321 1222 223
Q ss_pred CCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCccceeEEEccCCHHHHHHHHHHHHhcCCeEEEEecCccChHHH
Q 006476 237 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 316 (643)
Q Consensus 237 ~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l 316 (643)
.++.++++|||||++...... ..+...+... ...|...+. .+...+. ..+++++|||++++.++.+
T Consensus 139 ~~~~~~i~~SAT~~~~~~~~~---~~~~~~~~~~--~~~p~~~~~------~~~~~l~---~~~~~~lVF~~s~~~a~~l 204 (451)
T 2jlq_A 139 MGEAAAIFMTATPPGSTDPFP---QSNSPIEDIE--REIPERSWN------TGFDWIT---DYQGKTVWFVPSIKAGNDI 204 (451)
T ss_dssp TTSCEEEEECSSCTTCCCSSC---CCSSCEEEEE--CCCCSSCCS------SSCHHHH---HCCSCEEEECSSHHHHHHH
T ss_pred CCCceEEEEccCCCccchhhh---cCCCceEecC--ccCCchhhH------HHHHHHH---hCCCCEEEEcCCHHHHHHH
Confidence 468999999999976543211 1222222211 011111110 0112222 2468999999999999999
Q ss_pred HHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEec------------------
Q 006476 317 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD------------------ 378 (643)
Q Consensus 317 ~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d------------------ 378 (643)
++.|+.. ++.+..+||++. +++++.|++|+.+|||||+++++|+|+|+ ++||++|
T Consensus 205 ~~~L~~~--g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~ 277 (451)
T 2jlq_A 205 ANCLRKS--GKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILA 277 (451)
T ss_dssp HHHHHTT--TCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEE
T ss_pred HHHHHHc--CCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeec
Confidence 9999987 889999999864 57999999999999999999999999999 9999988
Q ss_pred --CCCCCHHHHHHHHhccCCCCC-ceEEEEEecCC
Q 006476 379 --VQQFGLAQLYQLRGRVGRADK-EAHAYLFYPDK 410 (643)
Q Consensus 379 --~p~~s~~~~~Qr~GR~GR~g~-~g~a~~l~~~~ 410 (643)
.|. +.++|+||+||+||.|+ .|.||+++..+
T Consensus 278 ~~~p~-s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 278 GPIPV-TPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp EEEEC-CHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccC-CHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 775 99999999999999998 89999987544
No 45
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.6e-34 Score=328.71 Aligned_cols=307 Identities=17% Similarity=0.151 Sum_probs=228.4
Q ss_pred hcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHh
Q 006476 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERF 163 (643)
Q Consensus 84 ~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~ 163 (643)
....+.|||+|..+++.++. |+ |++++||+|||++|.+|++.....|++|+|++||++||.|.++.+...+
T Consensus 106 R~lG~rP~~VQ~~~ip~Ll~-------G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 106 RVLDQRPFDVQVMGAAALHL-------GN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HHHSCCCCHHHHHHHHHHHT-------TE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHhHhc-------CC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 34566999999999998864 22 9999999999999999998666678999999999999999999998744
Q ss_pred cCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhh-----hc-------ccccCccceEEeecccccch----
Q 006476 164 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GS-------RVVYNNLGLLVVDEEQRFGV---- 227 (643)
Q Consensus 164 ~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L-----~~-------~~~~~~l~llViDEah~~g~---- 227 (643)
.+.|++++++.|+.+...+.... + +||+||||++| .+ .+.++.+.++||||||++..
T Consensus 177 -~~lGLsv~~i~gg~~~~~r~~~y-----~-~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDear 249 (922)
T 1nkt_A 177 -RFLGLQVGVILATMTPDERRVAY-----N-ADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEAR 249 (922)
T ss_dssp -HHTTCCEEECCTTCCHHHHHHHH-----H-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGG
T ss_pred -hhcCCeEEEEeCCCCHHHHHHhc-----C-CCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCc
Confidence 44589999999988765443332 2 89999999988 22 24457899999999998631
Q ss_pred -----------------hHHHHHHhcC---------CCceEE-----------------EeccCCChH--hHHHHH---h
Q 006476 228 -----------------KQKEKIASFK---------ISVDVL-----------------TLSATPIPR--TLYLAL---T 259 (643)
Q Consensus 228 -----------------~~~~~l~~~~---------~~~~vl-----------------~lSATp~~~--~~~~~~---~ 259 (643)
.....+..++ .+.+++ ++|||.++. ....++ .
T Consensus 250 tPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~ 329 (922)
T 1nkt_A 250 TPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKE 329 (922)
T ss_dssp SCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHH
T ss_pred cceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHH
Confidence 1234455565 567888 899996532 111111 0
Q ss_pred cC-CC-------cc------------------------------------------------------------------
Q 006476 260 GF-RD-------AS------------------------------------------------------------------ 265 (643)
Q Consensus 260 ~~-~~-------~~------------------------------------------------------------------ 265 (643)
.+ ++ ..
T Consensus 330 l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~ 409 (922)
T 1nkt_A 330 LFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEA 409 (922)
T ss_dssp HCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGH
T ss_pred HhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHH
Confidence 00 01 00
Q ss_pred ----------eeeCCCCC---ccceeEEEccCCHHHHHHHHHH----HHhcCCeEEEEecCccChHHHHHHHHhhCCCCc
Q 006476 266 ----------LISTPPPE---RLPIKTHLSAFSKEKVISAIKY----ELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 328 (643)
Q Consensus 266 ----------~i~~~~~~---~~~v~~~~~~~~~~~~~~~i~~----~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~ 328 (643)
++.+|+.. +......+. .+......++.. ....+.++||||++++.++.+++.|+.. +++
T Consensus 410 ~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~-~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~--Gi~ 486 (922)
T 1nkt_A 410 AELHEIYKLGVVSIPTNMPMIREDQSDLIY-KTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKR--RIP 486 (922)
T ss_dssp HHHHHHHCCEEEECCCSSCCCCEECCCEEE-SCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT--TCC
T ss_pred HHHHHHhCCCeEEeCCCCCcccccCCcEEE-eCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC--CCC
Confidence 01111100 000000111 223333444333 3345678999999999999999999998 999
Q ss_pred EEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCC-------------------------------------
Q 006476 329 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA------------------------------------- 371 (643)
Q Consensus 329 v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v------------------------------------- 371 (643)
+.++||++.+.+++.+.+.|+.| .|+|||++++||+||+..
T Consensus 487 ~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (922)
T 1nkt_A 487 HNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVK 564 (922)
T ss_dssp CEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHH
T ss_pred EEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHH
Confidence 99999999888887788888877 699999999999999975
Q ss_pred ---------------CEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCCC
Q 006476 372 ---------------NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 372 ---------------~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~ 412 (643)
.+||+++.|. +...|.||+||+||.|.+|.+.+|++.++.
T Consensus 565 ~~~~~~~~~V~~~GGlhVI~te~pe-s~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 565 EEASKEAKEVIEAGGLYVLGTERHE-SRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHTTHHHHHHHHTTSEEEEECSCCS-SHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHhhhHHHhcCCcEEEeccCCC-CHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999998 999999999999999999999999997754
No 46
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.1e-35 Score=366.45 Aligned_cols=317 Identities=19% Similarity=0.217 Sum_probs=229.4
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC--CCeEEEEeccHHHHHHHHH
Q 006476 80 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQHFD 157 (643)
Q Consensus 80 ~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~--g~~vlil~Pt~~La~Q~~~ 157 (643)
+.+....+..++|+|.+|++.++. .+.|++++||||||||++|.+|+++.+.. +.+++|++||++||.|.++
T Consensus 917 e~l~~~~f~~fnpiQ~q~~~~l~~------~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~ 990 (1724)
T 4f92_B 917 ESLYQDKFPFFNPIQTQVFNTVYN------SDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYM 990 (1724)
T ss_dssp HTTTTTTCSBCCHHHHHHHHHHHS------CCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhc------CCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHH
Confidence 333333345799999999999974 25789999999999999999999988753 6689999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-------ccccCccceEEeecccccchhH-
Q 006476 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-------RVVYNNLGLLVVDEEQRFGVKQ- 229 (643)
Q Consensus 158 ~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-------~~~~~~l~llViDEah~~g~~~- 229 (643)
.|.++|+...+++|+.++|+.+...+ .+ ++++|+|+||+.+.. ...++++++||+||+|.++...
T Consensus 991 ~~~~~f~~~~g~~V~~ltGd~~~~~~-----~~--~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg 1063 (1724)
T 4f92_B 991 DWYEKFQDRLNKKVVLLTGETSTDLK-----LL--GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENG 1063 (1724)
T ss_dssp HHHHHHTTTSCCCEEECCSCHHHHHH-----HH--HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTH
T ss_pred HHHHHhchhcCCEEEEEECCCCcchh-----hc--CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCC
Confidence 99998987668999999986433221 11 237999999997632 1235789999999999875321
Q ss_pred ---H---HHH----HhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCC-ccceeEEEccCC---H-H-------
Q 006476 230 ---K---EKI----ASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE-RLPIKTHLSAFS---K-E------- 287 (643)
Q Consensus 230 ---~---~~l----~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~-~~~v~~~~~~~~---~-~------- 287 (643)
. ..+ .....++|+|+||||.+.......+.+..........+.. ..|...++..++ . .
T Consensus 1064 ~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~ 1143 (1724)
T 4f92_B 1064 PVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAK 1143 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHH
T ss_pred ccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcc
Confidence 1 111 2345789999999997543322223333333333332222 234444433221 1 1
Q ss_pred HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC--------------------------------CCCcEEEEeCC
Q 006476 288 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF--------------------------------PGVDIAIAHGQ 335 (643)
Q Consensus 288 ~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~--------------------------------p~~~v~~~hg~ 335 (643)
.+.. .......+++++|||+++..++.++..|.... -..+|+++||+
T Consensus 1144 ~~~~-~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHag 1222 (1724)
T 4f92_B 1144 PVYH-AITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEG 1222 (1724)
T ss_dssp HHHH-HHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTT
T ss_pred hHHH-HHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCC
Confidence 1122 22334567899999999999998887764321 01369999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEE----ecCC-----CCCHHHHHHHHhccCCCCC--ceEEE
Q 006476 336 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV----QDVQ-----QFGLAQLYQLRGRVGRADK--EAHAY 404 (643)
Q Consensus 336 ~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~----~d~p-----~~s~~~~~Qr~GR~GR~g~--~g~a~ 404 (643)
|++.+|+.+++.|++|.++|||||+++++|||+|..++||. ||.. .++..+|.||+|||||.|. .|.|+
T Consensus 1223 L~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~av 1302 (1724)
T 4f92_B 1223 LSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCV 1302 (1724)
T ss_dssp SCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEE
Confidence 99999999999999999999999999999999996665552 2221 2478999999999999976 79999
Q ss_pred EEecCC
Q 006476 405 LFYPDK 410 (643)
Q Consensus 405 ~l~~~~ 410 (643)
+++++.
T Consensus 1303 ll~~~~ 1308 (1724)
T 4f92_B 1303 IMCQGS 1308 (1724)
T ss_dssp EEEEGG
T ss_pred EEecch
Confidence 998865
No 47
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2e-35 Score=366.71 Aligned_cols=311 Identities=20% Similarity=0.224 Sum_probs=226.1
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-----------CCCeEEEEeccHHHHHHH
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-----------AGKQAMVLAPTIVLAKQH 155 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-----------~g~~vlil~Pt~~La~Q~ 155 (643)
+..++|+|.++++.++. .+.|+++|||||||||++|.+++++.+. ++.+++|++|+++||.|+
T Consensus 77 ~~~ln~iQs~~~~~al~------~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~ 150 (1724)
T 4f92_B 77 FKTLNRIQSKLYRAALE------TDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEM 150 (1724)
T ss_dssp CSBCCHHHHHTHHHHHT------CCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc------CCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHH
Confidence 44899999999999874 2578999999999999999999998874 367899999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-------ccccCccceEEeecccccchh
Q 006476 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-------RVVYNNLGLLVVDEEQRFGVK 228 (643)
Q Consensus 156 ~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-------~~~~~~l~llViDEah~~g~~ 228 (643)
++.|.++|+.+ |++|+.++|+.+...+. ...++|+|+||+.+.. ...++++++|||||+|.++..
T Consensus 151 ~~~l~~~~~~~-gi~V~~~tGd~~~~~~~-------~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~ 222 (1724)
T 4f92_B 151 VGSFGKRLATY-GITVAELTGDHQLCKEE-------ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDD 222 (1724)
T ss_dssp HHHHHHHHTTT-TCCEEECCSSCSSCCTT-------GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGST
T ss_pred HHHHHHHHhhC-CCEEEEEECCCCCCccc-------cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCc
Confidence 99999999887 79999999976543321 1348999999997632 113578999999999977532
Q ss_pred ---HHH----H----HHhcCCCceEEEeccCCCh-HhHHHHHhcCCCcceeeCCCCCc--cceeEEEccC---CHHH---
Q 006476 229 ---QKE----K----IASFKISVDVLTLSATPIP-RTLYLALTGFRDASLISTPPPER--LPIKTHLSAF---SKEK--- 288 (643)
Q Consensus 229 ---~~~----~----l~~~~~~~~vl~lSATp~~-~~~~~~~~~~~~~~~i~~~~~~~--~~v~~~~~~~---~~~~--- 288 (643)
..+ + ......++|+|+||||.++ .....++..-......... ... .|+..++... ....
T Consensus 223 RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~-~~~RPvpL~~~~~~~~~~~~~~~~~ 301 (1724)
T 4f92_B 223 RGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFD-NSFRPVPLEQTYVGITEKKAIKRFQ 301 (1724)
T ss_dssp THHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECC-GGGCSSCEEEECCEECCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEEC-CCCccCccEEEEeccCCcchhhhhH
Confidence 111 1 2234678999999999643 2222222111001111111 122 2333332221 1111
Q ss_pred -HHHHHHHHH---hcCCeEEEEecCccChHHHHHHHHhhC-----------------------------------CCCcE
Q 006476 289 -VISAIKYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAF-----------------------------------PGVDI 329 (643)
Q Consensus 289 -~~~~i~~~l---~~~~qvlvf~~~~~~~e~l~~~L~~~~-----------------------------------p~~~v 329 (643)
+...+...+ ..+++++|||++++.++.+++.|.+.. -..+|
T Consensus 302 ~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gv 381 (1724)
T 4f92_B 302 IMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF 381 (1724)
T ss_dssp HHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTE
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCE
Confidence 111222222 346799999999999999998886431 01369
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEE----ecCCC-----CCHHHHHHHHhccCCCC--
Q 006476 330 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV----QDVQQ-----FGLAQLYQLRGRVGRAD-- 398 (643)
Q Consensus 330 ~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~----~d~p~-----~s~~~~~Qr~GR~GR~g-- 398 (643)
+++||+|++.+|..+++.|++|.++|||||++++.|||+|..++||. |+... .+..+|.||+|||||.|
T Consensus 382 a~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d 461 (1724)
T 4f92_B 382 AIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYD 461 (1724)
T ss_dssp EEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTC
T ss_pred EEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCC
Confidence 99999999999999999999999999999999999999997776663 44331 47899999999999986
Q ss_pred CceEEEEEecCCCC
Q 006476 399 KEAHAYLFYPDKSL 412 (643)
Q Consensus 399 ~~g~a~~l~~~~~~ 412 (643)
..|.++++.++++.
T Consensus 462 ~~G~~ii~~~~~~~ 475 (1724)
T 4f92_B 462 TKGEGILITSHGEL 475 (1724)
T ss_dssp SCEEEEEEEESTTC
T ss_pred CccEEEEEecchhH
Confidence 57999999987764
No 48
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.1e-34 Score=343.65 Aligned_cols=348 Identities=17% Similarity=0.200 Sum_probs=236.4
Q ss_pred HHHhcCCCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHhcCCCCCCHHHHHHHHHhHHhhccC
Q 006476 29 RTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTER 108 (643)
Q Consensus 29 ~~l~~l~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~ 108 (643)
...+++.. ..|...... ++..+.++.+..+.......+.. ..++|+|+|.+++..++..
T Consensus 110 ~~~~rl~~-~~~~~~~~~------~l~~~~~~~~~~~~~~~~~~l~~----------~~~~LrpyQ~eav~~~l~~---- 168 (968)
T 3dmq_A 110 KPQDRLFA-GQIDRMDRF------ALRYRARKYSSEQFRMPYSGLRG----------QRTSLIPHQLNIAHDVGRR---- 168 (968)
T ss_dssp CHHHHTTC-SSCCCHHHH------TTHHHHHHHHHHHHTCSSCSSSC----------CSSCCCHHHHHHHHHHHHS----
T ss_pred CHHHHHhh-cCCCCchHH------HHHHHHHHHHHHhhcCccccccC----------CCCCCcHHHHHHHHHHHHh----
Confidence 44666653 556654331 22334455555555444443322 2379999999999998763
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGK--QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 186 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~--~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~ 186 (643)
.+.++|++++||+|||.+++.++......|+ ++||+||+ .|+.||..++.++| ++++.++++...... ..
T Consensus 169 -~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f----~l~v~v~~~~~~~~~--~~ 240 (968)
T 3dmq_A 169 -HAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRF----NLRFALFDDERYAEA--QH 240 (968)
T ss_dssp -SSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHS----CCCCEECCHHHHHHH--HH
T ss_pred -cCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHh----CCCEEEEccchhhhh--hh
Confidence 2568999999999999999988888777665 99999999 99999999998876 356666655211110 00
Q ss_pred HHHHhcCCceEEEechHhhhcc------cccCccceEEeecccccchhH------HHHHHhcC-CCceEEEeccCCChHh
Q 006476 187 LDMIKHGHLNIIVGTHSLLGSR------VVYNNLGLLVVDEEQRFGVKQ------KEKIASFK-ISVDVLTLSATPIPRT 253 (643)
Q Consensus 187 ~~~l~~g~~dIiI~T~~~L~~~------~~~~~l~llViDEah~~g~~~------~~~l~~~~-~~~~vl~lSATp~~~~ 253 (643)
...-.....+|+|+|++.+.+. +...++++|||||||++.... ...+..+. ...++++|||||.++.
T Consensus 241 ~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~ 320 (968)
T 3dmq_A 241 DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLG 320 (968)
T ss_dssp TTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSC
T ss_pred hcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCC
Confidence 0001113579999999998653 345689999999999985321 33444442 4557999999996521
Q ss_pred HH----H---------------------------HHhcCCCcc------------ee----------eCC--CC------
Q 006476 254 LY----L---------------------------ALTGFRDAS------------LI----------STP--PP------ 272 (643)
Q Consensus 254 ~~----~---------------------------~~~~~~~~~------------~i----------~~~--~~------ 272 (643)
.. + ....+.+.. .+ ... ..
T Consensus 321 ~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~ 400 (968)
T 3dmq_A 321 MESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSAR 400 (968)
T ss_dssp SSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTH
T ss_pred HHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHH
Confidence 10 0 000000000 00 000 00
Q ss_pred --------------------CccceeE--------EEc------------------------------------------
Q 006476 273 --------------------ERLPIKT--------HLS------------------------------------------ 282 (643)
Q Consensus 273 --------------------~~~~v~~--------~~~------------------------------------------ 282 (643)
.+..+.. +..
T Consensus 401 ~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~ 480 (968)
T 3dmq_A 401 QELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGD 480 (968)
T ss_dssp HHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSS
T ss_pred HHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhh
Confidence 0000000 000
Q ss_pred ---cCCHHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCC--ceE
Q 006476 283 ---AFSKEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA--IKI 355 (643)
Q Consensus 283 ---~~~~~~~~~~i~~~l--~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~--~~I 355 (643)
..........+...+ ..+++++|||+++..++.+++.|.... ++++..+||+|++.+|+.++++|++|+ ++|
T Consensus 481 ~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~-g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~v 559 (968)
T 3dmq_A 481 NATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRERE-GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQV 559 (968)
T ss_dssp SCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTT-CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEE
T ss_pred hhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccE
Confidence 001111233333333 357899999999999999999999643 889999999999999999999999998 999
Q ss_pred EEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEe
Q 006476 356 LICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 407 (643)
Q Consensus 356 LVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~ 407 (643)
||||+++++|+|+|++++||++|+|. ++.+|+|++||+||.|+.|.|++++
T Consensus 560 LvaT~v~~~GlDl~~~~~VI~~d~p~-~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 560 LLCSEIGSEGRNFQFASHMVMFDLPF-NPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp EECSCCTTCSSCCTTCCEEECSSCCS-SHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred EEecchhhcCCCcccCcEEEEecCCC-CHHHHHHHhhccccCCCCceEEEEE
Confidence 99999999999999999999999994 9999999999999999988655543
No 49
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.2e-35 Score=335.92 Aligned_cols=291 Identities=15% Similarity=0.151 Sum_probs=188.7
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---------CCCeEEEEeccHHHHHHHH-H
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---------AGKQAMVLAPTIVLAKQHF-D 157 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---------~g~~vlil~Pt~~La~Q~~-~ 157 (643)
+.|+|+|.+|++.+++.+.. ...++++++|||||||++++..+...+. .+++++||+||++|+.|++ +
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~--~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQ--GKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHT--TCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------
T ss_pred CCchHHHHHHHHHHHHHHhc--CCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHH
Confidence 48999999999999887643 2466899999999999998887777665 4589999999999999998 6
Q ss_pred HHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc---------cccCccceEEeecccccchh
Q 006476 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR---------VVYNNLGLLVVDEEQRFGVK 228 (643)
Q Consensus 158 ~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~---------~~~~~l~llViDEah~~g~~ 228 (643)
.|+. | +..+..+.+.. ..+..+|+|+||+.|.+. +...++++||+||||++...
T Consensus 255 ~~~~-~----~~~~~~~~~~~------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~ 317 (590)
T 3h1t_A 255 TFTP-F----GDARHKIEGGK------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSAR 317 (590)
T ss_dssp CCTT-T----CSSEEECCC--------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----
T ss_pred HHHh-c----chhhhhhhccC------------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccccc
Confidence 5553 3 23444444321 124589999999988653 23467899999999998642
Q ss_pred ---HHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceee----------CCCCCccceeEE---------------
Q 006476 229 ---QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS----------TPPPERLPIKTH--------------- 280 (643)
Q Consensus 229 ---~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~----------~~~~~~~~v~~~--------------- 280 (643)
....+....++.++++|||||...........+....... ..|.....+...
T Consensus 318 ~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (590)
T 3h1t_A 318 DNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDR 397 (590)
T ss_dssp ----CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------
T ss_pred chHHHHHHHHhCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccc
Confidence 2233333335688999999997533222221111111000 011000001000
Q ss_pred ---------EccC----------CHHHHHHHHHHHH---hcCCeEEEEecCccChHHHHHHHHhhCCC------CcEEEE
Q 006476 281 ---------LSAF----------SKEKVISAIKYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAFPG------VDIAIA 332 (643)
Q Consensus 281 ---------~~~~----------~~~~~~~~i~~~l---~~~~qvlvf~~~~~~~e~l~~~L~~~~p~------~~v~~~ 332 (643)
.... ....+.+.+...+ .++++++|||+++.+++.+++.|....+. ..+..+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i 477 (590)
T 3h1t_A 398 FGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARV 477 (590)
T ss_dssp -----------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEEC
T ss_pred cccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEE
Confidence 0000 0011222232222 34689999999999999999999887542 237889
Q ss_pred eCCCCHHHHHHHHHHHhcCCce---EEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCC
Q 006476 333 HGQQYSRQLEETMEKFAQGAIK---ILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK 399 (643)
Q Consensus 333 hg~~~~~~r~~v~~~F~~g~~~---ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~ 399 (643)
||++++ +|++++++|++|+.+ |||||+++++|+|+|++++||+++.+. +...|+||+||+||.+.
T Consensus 478 ~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~-s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 478 TSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVN-SMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp SSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCC-CHHHHHHHHTTSCCCBG
T ss_pred eCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCC-ChHHHHHHHhhhcccCc
Confidence 999864 799999999998876 899999999999999999999999997 99999999999999874
No 50
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=4.3e-35 Score=331.25 Aligned_cols=256 Identities=16% Similarity=0.129 Sum_probs=190.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l 190 (643)
+++++++||||||||++|..+++. ++.+++|++|||+||.|+++++.+.++ .++....|+..
T Consensus 232 ~~~vlv~ApTGSGKT~a~~l~ll~---~g~~vLVl~PTReLA~Qia~~l~~~~g----~~vg~~vG~~~----------- 293 (666)
T 3o8b_A 232 FQVAHLHAPTGSGKSTKVPAAYAA---QGYKVLVLNPSVAATLGFGAYMSKAHG----IDPNIRTGVRT----------- 293 (666)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHHHS----CCCEEECSSCE-----------
T ss_pred CCeEEEEeCCchhHHHHHHHHHHH---CCCeEEEEcchHHHHHHHHHHHHHHhC----CCeeEEECcEe-----------
Confidence 578999999999999999888775 477999999999999999999887663 45666666533
Q ss_pred hcCCceEEEechHhhhcc--cccCccceEEeecccccchhHHH----HHHhcCCCce--EEEeccCCChHhHHHHHhcCC
Q 006476 191 KHGHLNIIVGTHSLLGSR--VVYNNLGLLVVDEEQRFGVKQKE----KIASFKISVD--VLTLSATPIPRTLYLALTGFR 262 (643)
Q Consensus 191 ~~g~~dIiI~T~~~L~~~--~~~~~l~llViDEah~~g~~~~~----~l~~~~~~~~--vl~lSATp~~~~~~~~~~~~~ 262 (643)
..+.++|+|+||++|... +.++++++|||||||.+...... .++.++...+ ++++|||+++... ..
T Consensus 294 ~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~------~~ 367 (666)
T 3o8b_A 294 ITTGAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VP 367 (666)
T ss_dssp ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC------CC
T ss_pred ccCCCCEEEECcHHHHhCCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc------cC
Confidence 235689999999998754 45578999999999987654322 2333444444 7778999976311 11
Q ss_pred Ccce--eeCCCCCccceeEEEccCCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHH
Q 006476 263 DASL--ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQ 340 (643)
Q Consensus 263 ~~~~--i~~~~~~~~~v~~~~~~~~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~ 340 (643)
.+.. +...... .+. ....... ....++++++||||+++.++.+++.|+.. ++.+..+||+|++.+
T Consensus 368 ~p~i~~v~~~~~~--~i~-~~~~~~~--------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~--g~~v~~lHG~l~q~e 434 (666)
T 3o8b_A 368 HPNIEEVALSNTG--EIP-FYGKAIP--------IEAIRGGRHLIFCHSKKKCDELAAKLSGL--GINAVAYYRGLDVSV 434 (666)
T ss_dssp CTTEEEEECBSCS--SEE-ETTEEEC--------GGGSSSSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECTTSCGGG
T ss_pred CcceEEEeecccc--hhH-HHHhhhh--------hhhccCCcEEEEeCCHHHHHHHHHHHHhC--CCcEEEecCCCCHHH
Confidence 1111 1110000 010 0000000 01226789999999999999999999987 899999999999875
Q ss_pred HHHHHHHHhcCCceEEEecccccccccccCCCEEE----------Eec-----------CCCCCHHHHHHHHhccCCCCC
Q 006476 341 LEETMEKFAQGAIKILICTNIVESGLDIQNANTII----------VQD-----------VQQFGLAQLYQLRGRVGRADK 399 (643)
Q Consensus 341 r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI----------~~d-----------~p~~s~~~~~Qr~GR~GR~g~ 399 (643)
|.++..+|||||+++++|||+| +++|| ||| .|. +.++|+||+||+|| |+
T Consensus 435 -------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~-s~~syiQRiGRtGR-g~ 504 (666)
T 3o8b_A 435 -------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQ-DAVSRSQRRGRTGR-GR 504 (666)
T ss_dssp -------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEEC-BHHHHHHHHTTBCS-SS
T ss_pred -------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcC-CHHHHHHHhccCCC-CC
Confidence 4566679999999999999998 99999 566 676 89999999999999 89
Q ss_pred ceEEEEEecCCCCCc
Q 006476 400 EAHAYLFYPDKSLLS 414 (643)
Q Consensus 400 ~g~a~~l~~~~~~~~ 414 (643)
.|. |.|+++++...
T Consensus 505 ~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 505 RGI-YRFVTPGERPS 518 (666)
T ss_dssp CEE-EEESCCCCBCS
T ss_pred CCE-EEEEecchhhc
Confidence 999 99999877644
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1e-34 Score=320.23 Aligned_cols=259 Identities=22% Similarity=0.206 Sum_probs=184.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 189 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~ 189 (643)
+.+++++||||||||++|++|++..+ ..+.+++|++||++||.|+++++. +..+....+.....
T Consensus 21 ~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~-------- 85 (459)
T 2z83_A 21 RQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQRE-------- 85 (459)
T ss_dssp TCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC--------------
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc-------CceEeEEecccccC--------
Confidence 68999999999999999999988755 478899999999999999998875 33444333211110
Q ss_pred HhcCCceEEEechHhhh----cccccCccceEEeecccccchh---HHHHHH--hcCCCceEEEeccCCChHhHHHHHhc
Q 006476 190 IKHGHLNIIVGTHSLLG----SRVVYNNLGLLVVDEEQRFGVK---QKEKIA--SFKISVDVLTLSATPIPRTLYLALTG 260 (643)
Q Consensus 190 l~~g~~dIiI~T~~~L~----~~~~~~~l~llViDEah~~g~~---~~~~l~--~~~~~~~vl~lSATp~~~~~~~~~~~ 260 (643)
......+.+.|++.+. ....++++++|||||||++... ....+. ...++.++++||||+++.......
T Consensus 86 -~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~~~~~-- 162 (459)
T 2z83_A 86 -HQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDPFPD-- 162 (459)
T ss_dssp ---CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC--
T ss_pred -CCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcchhhhcc--
Confidence 1122446677766553 3455789999999999985321 111121 123689999999999754211100
Q ss_pred CCCcceeeCCCCCccceeEEEccCC---HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCC
Q 006476 261 FRDASLISTPPPERLPIKTHLSAFS---KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 337 (643)
Q Consensus 261 ~~~~~~i~~~~~~~~~v~~~~~~~~---~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~ 337 (643)
. ..|+........ .......+. ..+++++|||++++.++.+++.|+.. ++.+..+||+
T Consensus 163 -~-----------~~pi~~~~~~~~~~~~~~~~~~l~---~~~~~~LVF~~s~~~~~~l~~~L~~~--g~~v~~lh~~-- 223 (459)
T 2z83_A 163 -S-----------NAPIHDLQDEIPDRAWSSGYEWIT---EYAGKTVWFVASVKMGNEIAMCLQRA--GKKVIQLNRK-- 223 (459)
T ss_dssp -C-----------SSCEEEEECCCCSSCCSSCCHHHH---HCCSCEEEECSCHHHHHHHHHHHHHT--TCCEEEESTT--
T ss_pred -C-----------CCCeEEecccCCcchhHHHHHHHH---hcCCCEEEEeCChHHHHHHHHHHHhc--CCcEEecCHH--
Confidence 0 111111100000 001112222 24789999999999999999999998 8999999995
Q ss_pred HHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEE--------------------ecCCCCCHHHHHHHHhccCCC
Q 006476 338 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV--------------------QDVQQFGLAQLYQLRGRVGRA 397 (643)
Q Consensus 338 ~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~--------------------~d~p~~s~~~~~Qr~GR~GR~ 397 (643)
+|+.+++.|++|+.+|||||+++++|+|+|+ ++||+ ++.|. +.++|+||+||+||.
T Consensus 224 --~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~-s~~~~~QR~GRaGR~ 299 (459)
T 2z83_A 224 --SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPI-TSASAAQRRGRVGRN 299 (459)
T ss_dssp --CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEEC-CHHHHHHHHTTSSCC
T ss_pred --HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCC-CHHHHHHhccccCCC
Confidence 6788999999999999999999999999999 99998 56886 999999999999999
Q ss_pred CC-ceEEEEEecCC
Q 006476 398 DK-EAHAYLFYPDK 410 (643)
Q Consensus 398 g~-~g~a~~l~~~~ 410 (643)
|+ .|.||+|+++.
T Consensus 300 g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 300 PNQVGDEYHYGGAT 313 (459)
T ss_dssp TTCCCEEEEECSCC
T ss_pred CCCCCeEEEEEccc
Confidence 87 89999999875
No 52
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=4.3e-35 Score=333.22 Aligned_cols=282 Identities=18% Similarity=0.206 Sum_probs=202.1
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEeccHHHHHHHHHHHHHHhcCC
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKY 166 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~ 166 (643)
..++|+|+.+++.+++ ++|++++||||||||++|++|++..+ ..+.+++|++||++||.|+++.+.
T Consensus 170 ~~~lpiq~~~i~~l~~-------g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~------ 236 (618)
T 2whx_A 170 RIGEPDYEVDEDIFRK-------KRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR------ 236 (618)
T ss_dssp CCCCCCCCCCGGGGST-------TCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------
T ss_pred ccCCCccccCHHHHhc-------CCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc------
Confidence 5778998887665543 68999999999999999988887654 467799999999999999998775
Q ss_pred CCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc----ccccCccceEEeecccccchh---HHHHHH-hc-C
Q 006476 167 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRFGVK---QKEKIA-SF-K 237 (643)
Q Consensus 167 ~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~----~~~~~~l~llViDEah~~g~~---~~~~l~-~~-~ 237 (643)
+..+.+..+... ........+.+.|++.+.. ...++++++|||||||++... ....+. .+ +
T Consensus 237 -~~~v~~~~~~l~---------~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~ 306 (618)
T 2whx_A 237 -GLPIRYQTPAVK---------SDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEM 306 (618)
T ss_dssp -TSCEEECCTTSS---------CCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHH
T ss_pred -CCceeEecccce---------eccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhcc
Confidence 234442222100 0112224566677665542 345789999999999997432 222222 22 2
Q ss_pred CCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCccceeEEEccCCHHHHHHHHHHHHhcCCeEEEEecCccChHHHH
Q 006476 238 ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 317 (643)
Q Consensus 238 ~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~ 317 (643)
++.|+++||||+++....+.. .+...+.... ..+ ......+...+. ..+++++|||++++.++.++
T Consensus 307 ~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~--~~~------~~~~~~ll~~l~---~~~~~~LVF~~s~~~a~~l~ 372 (618)
T 2whx_A 307 GEAAAIFMTATPPGSTDPFPQ---SNSPIEDIER--EIP------ERSWNTGFDWIT---DYQGKTVWFVPSIKAGNDIA 372 (618)
T ss_dssp TSCEEEEECSSCTTCCCSSCC---CSSCEEEEEC--CCC------SSCCSSSCHHHH---HCCSCEEEECSSHHHHHHHH
T ss_pred cCccEEEEECCCchhhhhhhc---cCCceeeecc--cCC------HHHHHHHHHHHH---hCCCCEEEEECChhHHHHHH
Confidence 689999999999665321110 1111111110 000 000011222222 35789999999999999999
Q ss_pred HHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEE--------------------EEe
Q 006476 318 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI--------------------IVQ 377 (643)
Q Consensus 318 ~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~V--------------------I~~ 377 (643)
+.|+.. +.++..+||+ +|++++++|++|+.+|||||+++++|+|+| +++| |++
T Consensus 373 ~~L~~~--g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~ 445 (618)
T 2whx_A 373 NCLRKS--GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAG 445 (618)
T ss_dssp HHHHHT--TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEE
T ss_pred HHHHHc--CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcc
Confidence 999998 8899999985 688899999999999999999999999998 9998 666
Q ss_pred cCCCCCHHHHHHHHhccCCCC-CceEEEEEec---CCCCCc
Q 006476 378 DVQQFGLAQLYQLRGRVGRAD-KEAHAYLFYP---DKSLLS 414 (643)
Q Consensus 378 d~p~~s~~~~~Qr~GR~GR~g-~~g~a~~l~~---~~~~~~ 414 (643)
+.|. +.++|+||+||+||.| +.|.||+|++ +++...
T Consensus 446 d~P~-s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~ 485 (618)
T 2whx_A 446 PIPV-TPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDH 485 (618)
T ss_dssp EEEC-CHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTC
T ss_pred cccC-CHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHH
Confidence 7786 9999999999999996 4899999997 554433
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=4.9e-33 Score=317.68 Aligned_cols=300 Identities=18% Similarity=0.186 Sum_probs=211.2
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhc-----cCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLT-----ERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 152 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~-----~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La 152 (643)
+.....+.||+..++.|.++|..+..... ..-.+++++++||||||||+.++..+. ..++++|++||++||
T Consensus 117 f~~~~~~~fp~~e~~d~l~~i~dl~~p~~~~p~ar~l~rk~vlv~apTGSGKT~~al~~l~----~~~~gl~l~PtR~LA 192 (677)
T 3rc3_A 117 FLRHAKQIFPVLDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYF----SAKSGVYCGPLKLLA 192 (677)
T ss_dssp HHHHHHHHCGGGGCHHHHHHHTBCCCGGGGCHHHHTSCCEEEEEECCTTSSHHHHHHHHHH----HSSSEEEEESSHHHH
T ss_pred HHHHHHhhCCCcCCHHHHHHHhhccChhhhCHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH----hcCCeEEEeCHHHHH
Confidence 44556678999889999999865422111 012467899999999999985554443 345679999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccc-----h
Q 006476 153 KQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFG-----V 227 (643)
Q Consensus 153 ~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g-----~ 227 (643)
.|+++++++. ++++..++|+..... .-.....+++++|++.+. ...++++|||||+|+++ .
T Consensus 193 ~Qi~~~l~~~-----g~~v~lltG~~~~iv------~TpGr~~~il~~T~e~~~---l~~~v~lvVIDEaH~l~d~~~g~ 258 (677)
T 3rc3_A 193 HEIFEKSNAA-----GVPCDLVTGEERVTV------QPNGKQASHVSCTVEMCS---VTTPYEVAVIDEIQMIRDPARGW 258 (677)
T ss_dssp HHHHHHHHHT-----TCCEEEECSSCEECC------STTCCCCSEEEEEGGGCC---SSSCEEEEEECSGGGGGCTTTHH
T ss_pred HHHHHHHHhc-----CCcEEEEECCeeEEe------cCCCcccceeEecHhHhh---hcccCCEEEEecceecCCccchH
Confidence 9999999874 688999988643310 000012567777776553 24678999999999863 3
Q ss_pred hHHHHHHhcC-CCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCccceeEEEccCCHHHHHHHHHHHHhcCCeEEEE
Q 006476 228 KQKEKIASFK-ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 306 (643)
Q Consensus 228 ~~~~~l~~~~-~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~i~~~l~~~~qvlvf 306 (643)
.....+..++ .+.+++++|||. +.........-....+... ....+......... .+. .+ ..++ +||
T Consensus 259 ~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~~~~~~v~~~--~r~~~l~~~~~~l~------~l~-~~-~~g~-iIf 326 (677)
T 3rc3_A 259 AWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTTGEEVEVRDY--KRLTPISVLDHALE------SLD-NL-RPGD-CIV 326 (677)
T ss_dssp HHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHHTCCEEEEEC--CCSSCEEECSSCCC------SGG-GC-CTTE-EEE
T ss_pred HHHHHHHccCccceEEEeccchH-HHHHHHHHhcCCceEEEEe--eecchHHHHHHHHH------HHH-hc-CCCC-EEE
Confidence 3345566665 788999999994 2222222211112222111 11111111000000 000 01 2344 677
Q ss_pred ecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhc--CCceEEEecccccccccccCCCEEEEecCCC---
Q 006476 307 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ--GAIKILICTNIVESGLDIQNANTIIVQDVQQ--- 381 (643)
Q Consensus 307 ~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~--g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~--- 381 (643)
|+++++++.+++.|... +..+.++||+|++.+|+++++.|++ |.++|||||+++++|||+ ++++||+++.++
T Consensus 327 ~~s~~~ie~la~~L~~~--g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~ 403 (677)
T 3rc3_A 327 CFSKNDIYSVSRQIEIR--GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSI 403 (677)
T ss_dssp CSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---
T ss_pred EcCHHHHHHHHHHHHhc--CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccccc
Confidence 99999999999999987 8899999999999999999999999 889999999999999999 799999999832
Q ss_pred ----------CCHHHHHHHHhccCCCCC---ceEEEEEecCC
Q 006476 382 ----------FGLAQLYQLRGRVGRADK---EAHAYLFYPDK 410 (643)
Q Consensus 382 ----------~s~~~~~Qr~GR~GR~g~---~g~a~~l~~~~ 410 (643)
.+.++|+||+|||||.|. .|.||++++.+
T Consensus 404 ~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d 445 (677)
T 3rc3_A 404 NEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHED 445 (677)
T ss_dssp --------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTH
T ss_pred ccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecch
Confidence 379999999999999985 48998887653
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.98 E-value=8.1e-32 Score=300.23 Aligned_cols=307 Identities=18% Similarity=0.189 Sum_probs=214.2
Q ss_pred CCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC--CCeEEEEeccHHHHHHHHHHHHHHh
Q 006476 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQHFDVVSERF 163 (643)
Q Consensus 86 ~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~--g~~vlil~Pt~~La~Q~~~~~~~~~ 163 (643)
+...|+|+|.++++.+.... ..+.+.+++.+||+|||.+++..+...... .+++||+||+ .|+.||.+++.+.+
T Consensus 34 ~~~~L~~~Q~~~v~~l~~~~---~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 34 IKANLRPYQIKGFSWMRFMN---KLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFA 109 (500)
T ss_dssp CSSCCCHHHHHHHHHHHHHH---HTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHC
T ss_pred hhccchHHHHHHHHHHHHHh---hCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHC
Confidence 34689999999998875422 125689999999999999987766655544 3689999995 68899999998743
Q ss_pred cCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccc--cCccceEEeecccccch---hHHHHHHhcCC
Q 006476 164 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV--YNNLGLLVVDEEQRFGV---KQKEKIASFKI 238 (643)
Q Consensus 164 ~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~--~~~l~llViDEah~~g~---~~~~~l~~~~~ 238 (643)
|+.++..++|.... ...+..+|+|+|++.+.+... ..++++||+||||++.. .....+..+ .
T Consensus 110 ---~~~~v~~~~g~~~~---------~~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l-~ 176 (500)
T 1z63_A 110 ---PHLRFAVFHEDRSK---------IKLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKEL-K 176 (500)
T ss_dssp ---TTSCEEECSSSTTS---------CCGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTS-C
T ss_pred ---CCceEEEEecCchh---------ccccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCCHhHHHHHHHHhh-c
Confidence 35778887775421 112347999999999976533 35689999999999843 234555555 4
Q ss_pred CceEEEeccCCChHhHHHHHh---c---------------------------------CCCcceeeCCCC-----Cccce
Q 006476 239 SVDVLTLSATPIPRTLYLALT---G---------------------------------FRDASLISTPPP-----ERLPI 277 (643)
Q Consensus 239 ~~~vl~lSATp~~~~~~~~~~---~---------------------------------~~~~~~i~~~~~-----~~~~v 277 (643)
..+.+++||||..+.....+. . +..+..+..... ...|-
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~ 256 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPD 256 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCS
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCC
Confidence 567899999997643321110 0 000001100000 00111
Q ss_pred eE---EEccCCH-----------------------------------------------------------HHHHHHHHH
Q 006476 278 KT---HLSAFSK-----------------------------------------------------------EKVISAIKY 295 (643)
Q Consensus 278 ~~---~~~~~~~-----------------------------------------------------------~~~~~~i~~ 295 (643)
.. .....++ ..+.+.+..
T Consensus 257 ~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~ 336 (500)
T 1z63_A 257 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEE 336 (500)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHH
Confidence 10 0011110 012233334
Q ss_pred HHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcC-Cce-EEEecccccccccccCCCE
Q 006476 296 ELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIK-ILICTNIVESGLDIQNANT 373 (643)
Q Consensus 296 ~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g-~~~-ILVaT~i~~~GiDip~v~~ 373 (643)
....+.+++||++.+..++.+++.|.... +..+..+||+++..+|++++++|++| ..+ +|+||+++++|+|+|++++
T Consensus 337 ~~~~~~k~lvF~~~~~~~~~l~~~l~~~~-~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~ 415 (500)
T 1z63_A 337 ALDEGDKIAIFTQFVDMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANR 415 (500)
T ss_dssp HHTTTCCEEEECSCHHHHHHHHHHHHHHH-TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSE
T ss_pred HHccCCcEEEEEehHHHHHHHHHHHHHhh-CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCE
Confidence 44567899999999999999999998742 67889999999999999999999998 555 8999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHhccCCCCCce--EEEEEecCCC
Q 006476 374 IIVQDVQQFGLAQLYQLRGRVGRADKEA--HAYLFYPDKS 411 (643)
Q Consensus 374 VI~~d~p~~s~~~~~Qr~GR~GR~g~~g--~a~~l~~~~~ 411 (643)
||++|+|. ++..+.|++||++|.|+.. .+|.++....
T Consensus 416 vi~~d~~~-~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 416 VIHFDRWW-NPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp EEESSCCS-CC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred EEEeCCCC-CcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 99999995 9999999999999998765 4566777653
No 55
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=6.6e-28 Score=269.04 Aligned_cols=307 Identities=18% Similarity=0.207 Sum_probs=222.0
Q ss_pred HHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHH
Q 006476 81 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 160 (643)
Q Consensus 81 ~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~ 160 (643)
.-.......|++.|..+.-.+.. | .|..+.||+|||++|.+|++-....|++|.|++||..||.|-++.+.
T Consensus 67 Aa~R~lg~r~~dvQligg~~L~~-------G--~iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~ 137 (822)
T 3jux_A 67 AARRTLGMRPFDVQVMGGIALHE-------G--KVAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMG 137 (822)
T ss_dssp HHHHHTSCCCCHHHHHHHHHHHT-------T--CEEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHhC-------C--ChhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHH
Confidence 33445577899999998765532 2 39999999999999999998777789999999999999999999998
Q ss_pred HHhcCCCCceEEEEeC--------------------------------------------------CCChHHHHHHHHHH
Q 006476 161 ERFSKYPDIKVGLLSR--------------------------------------------------FQSKAEKEEHLDMI 190 (643)
Q Consensus 161 ~~~~~~~~i~v~~l~g--------------------------------------------------~~~~~~~~~~~~~l 190 (643)
..+.- .|++|+++.. ..+..+++..+.
T Consensus 138 ~l~~~-Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~-- 214 (822)
T 3jux_A 138 PVYLF-LGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYL-- 214 (822)
T ss_dssp HHHHH-TTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHH--
T ss_pred HHHHH-hCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhc--
Confidence 75544 4899999987 233444555442
Q ss_pred hcCCceEEEechHhh-----hccc-------ccCccceEEeeccccc---------------------------------
Q 006476 191 KHGHLNIIVGTHSLL-----GSRV-------VYNNLGLLVVDEEQRF--------------------------------- 225 (643)
Q Consensus 191 ~~g~~dIiI~T~~~L-----~~~~-------~~~~l~llViDEah~~--------------------------------- 225 (643)
+||++||..-+ .+.+ ..+.+.+.||||+|.+
T Consensus 215 ----~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~ 290 (822)
T 3jux_A 215 ----CDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFV 290 (822)
T ss_dssp ----SSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSC
T ss_pred ----CCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcC
Confidence 79999998643 3322 2356789999999831
Q ss_pred -------------------chhHHHH----------------------HHh---c-------------------------
Q 006476 226 -------------------GVKQKEK----------------------IAS---F------------------------- 236 (643)
Q Consensus 226 -------------------g~~~~~~----------------------l~~---~------------------------- 236 (643)
|....+. ++. +
T Consensus 291 ~~~dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~ 370 (822)
T 3jux_A 291 KDKDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLP 370 (822)
T ss_dssp BTTTEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCC
T ss_pred cCCcEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCC
Confidence 0000000 000 0
Q ss_pred ------------------------------------CCCceEEEeccCCChHhHHHHHhcCCCcceeeCCCCC---ccce
Q 006476 237 ------------------------------------KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE---RLPI 277 (643)
Q Consensus 237 ------------------------------------~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~---~~~v 277 (643)
+.-.++.+||+|.......+...+ +..++.+|+.. +...
T Consensus 371 grr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY--~l~vv~IPtnkp~~R~d~ 448 (822)
T 3jux_A 371 GRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVY--GMEVVVIPTHKPMIRKDH 448 (822)
T ss_dssp SCCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHS--CCCEEECCCSSCCCCEEC
T ss_pred CCcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHh--CCeEEEECCCCCcceeec
Confidence 001458899999876554444333 34455554322 2222
Q ss_pred eEEEccCCHHHHHHHHHH----HHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCc
Q 006476 278 KTHLSAFSKEKVISAIKY----ELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAI 353 (643)
Q Consensus 278 ~~~~~~~~~~~~~~~i~~----~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~ 353 (643)
...+. .+......++.. ....+.++||||++++.++.++..|... ++++.++||++.+.++..+...|+.|
T Consensus 449 ~d~vy-~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~--Gi~~~vLhgkq~~rE~~ii~~ag~~g-- 523 (822)
T 3jux_A 449 DDLVF-RTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKK--GIPHQVLNAKYHEKEAEIVAKAGQKG-- 523 (822)
T ss_dssp CCEEE-SSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTT--TCCCEEECSCHHHHHHHHHHHHHSTT--
T ss_pred CcEEE-ecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHC--CCCEEEeeCCchHHHHHHHHhCCCCC--
Confidence 11222 233333334333 3346789999999999999999999998 89999999996666665555666655
Q ss_pred eEEEeccccccccccc--------CCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 354 KILICTNIVESGLDIQ--------NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 354 ~ILVaT~i~~~GiDip--------~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
.|+|||++++||+||+ +..+||+++.|. +...|.||+||+||.|.+|.+++|++.++
T Consensus 524 ~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pe-s~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 524 MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHE-SRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCS-SHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCC-CHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 6999999999999998 667999999998 99999999999999999999999999876
No 56
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=5.1e-28 Score=277.42 Aligned_cols=316 Identities=17% Similarity=0.212 Sum_probs=219.5
Q ss_pred CCCCHHHHHHHHHhHHhhccC--CCCCcEEEEccCCCchHHHHHHHHHHHHHCC-------CeEEEEeccHHHHHHHHHH
Q 006476 88 YEPTPDQKKAFLDVERDLTER--ETPMDRLICGDVGFGKTEVALRAIFCVVSAG-------KQAMVLAPTIVLAKQHFDV 158 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~--~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g-------~~vlil~Pt~~La~Q~~~~ 158 (643)
..|+|+|.+++..+....... ..+...|++.+||+|||.+++..+......+ +++||++|+ .|+.||.++
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 489999999999887543211 3456789999999999999988877665543 469999997 889999999
Q ss_pred HHHHhcCCCCceEEEEeCCCChHHHHHHHHHH-hcC----CceEEEechHhhhccc---ccCccceEEeecccccch---
Q 006476 159 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI-KHG----HLNIIVGTHSLLGSRV---VYNNLGLLVVDEEQRFGV--- 227 (643)
Q Consensus 159 ~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l-~~g----~~dIiI~T~~~L~~~~---~~~~l~llViDEah~~g~--- 227 (643)
+.+++.. .+.+..++++. .......+... ..+ ..+|+|+|++.+.... .-.++++||+||||++..
T Consensus 133 ~~~~~~~--~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~ 209 (644)
T 1z3i_X 133 VGKWLGG--RVQPVAIDGGS-KDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDN 209 (644)
T ss_dssp HHHHHGG--GCCEEEECSSC-HHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCH
T ss_pred HHHHcCC--CeeEEEEeCCC-HHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhh
Confidence 9986543 35666666643 22222223222 221 4789999999887543 235789999999999742
Q ss_pred hHHHHHHhcCCCceEEEeccCCChHhHHHHH------------------h------------------------------
Q 006476 228 KQKEKIASFKISVDVLTLSATPIPRTLYLAL------------------T------------------------------ 259 (643)
Q Consensus 228 ~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~------------------~------------------------------ 259 (643)
.....+..+ ...+.+++||||..+.+...+ .
T Consensus 210 ~~~~al~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 288 (644)
T 1z3i_X 210 QTYLALNSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELI 288 (644)
T ss_dssp HHHHHHHHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHH
Confidence 334455555 345789999999764311000 0
Q ss_pred ------cCCCc-cee--eCCCCCccceeEEEcc-----------------------------------------------
Q 006476 260 ------GFRDA-SLI--STPPPERLPIKTHLSA----------------------------------------------- 283 (643)
Q Consensus 260 ------~~~~~-~~i--~~~~~~~~~v~~~~~~----------------------------------------------- 283 (643)
.++.. ..+ ..|+.....+......
T Consensus 289 ~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~ 368 (644)
T 1z3i_X 289 SIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYE 368 (644)
T ss_dssp HHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHH
Confidence 00000 000 0111000000000000
Q ss_pred ----------------------------CC-HHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEE
Q 006476 284 ----------------------------FS-KEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 332 (643)
Q Consensus 284 ----------------------------~~-~~~~~~~i~~~l--~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~ 332 (643)
.+ .-.+...+...+ ..+.+++||++....++.+...|... ++.+..+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~--g~~~~~l 446 (644)
T 1z3i_X 369 KCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR--RYLYVRL 446 (644)
T ss_dssp HHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH--TCCEEEE
T ss_pred HHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC--CCCEEEE
Confidence 00 001122222222 24689999999999999999999988 8999999
Q ss_pred eCCCCHHHHHHHHHHHhcCCce---EEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCc--eEEEEEe
Q 006476 333 HGQQYSRQLEETMEKFAQGAIK---ILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE--AHAYLFY 407 (643)
Q Consensus 333 hg~~~~~~r~~v~~~F~~g~~~---ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~--g~a~~l~ 407 (643)
||+++..+|++++++|++|... +|++|+++++|+|++++++||++|++. +++.+.|++||++|.|+. ..+|.++
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~w-np~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDW-NPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCS-SHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCC-CccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 9999999999999999998754 899999999999999999999999995 999999999999999865 4677788
Q ss_pred cCCC
Q 006476 408 PDKS 411 (643)
Q Consensus 408 ~~~~ 411 (643)
+...
T Consensus 526 ~~~t 529 (644)
T 1z3i_X 526 STGT 529 (644)
T ss_dssp ETTS
T ss_pred ECCC
Confidence 8764
No 57
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=2.1e-28 Score=290.54 Aligned_cols=308 Identities=15% Similarity=0.109 Sum_probs=203.8
Q ss_pred CCCCHHHHHHHHHhHHhhccC-------CCCCcEEEEccCCCchHHHHHHHHHHHHHC---CCeEEEEeccHHHHHHHHH
Q 006476 88 YEPTPDQKKAFLDVERDLTER-------ETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAKQHFD 157 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~-------~~~~d~li~a~TGsGKT~~~l~~i~~~~~~---g~~vlil~Pt~~La~Q~~~ 157 (643)
..|+|+|.+|++.++..+..+ ..+.+.+++++||||||++++.. ...+.. ..++|||+||++|+.|+.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l-~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKA-ARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHH-HHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHH-HHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 469999999999998754321 12468999999999999998444 454432 3699999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-------cccCccceEEeecccccchh-H
Q 006476 158 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------VVYNNLGLLVVDEEQRFGVK-Q 229 (643)
Q Consensus 158 ~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-------~~~~~l~llViDEah~~g~~-~ 229 (643)
+|.. |... .+.+..+... ....+..+..+|+|+|++.|... ..+....+||+||||++... .
T Consensus 349 ~f~~-f~~~------~v~~~~s~~~---l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~~ 418 (1038)
T 2w00_A 349 EYQR-FSPD------SVNGSENTAG---LKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEA 418 (1038)
T ss_dssp HHHT-TSTT------CSSSSCCCHH---HHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHHH
T ss_pred HHHH-hccc------ccccccCHHH---HHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcchHH
Confidence 9976 5432 1123323332 23344455689999999988642 13567789999999998653 2
Q ss_pred HHHHHhcCCCceEEEeccCCChH--------hHHHH-------------HhcCCCccee-eCCCCCcc-------c----
Q 006476 230 KEKIASFKISVDVLTLSATPIPR--------TLYLA-------------LTGFRDASLI-STPPPERL-------P---- 276 (643)
Q Consensus 230 ~~~l~~~~~~~~vl~lSATp~~~--------~~~~~-------------~~~~~~~~~i-~~~~~~~~-------~---- 276 (643)
...+....++.++++|||||... +...+ ..++.-+..+ ........ .
T Consensus 419 ~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~ 498 (1038)
T 2w00_A 419 QKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKL 498 (1038)
T ss_dssp HHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHH
T ss_pred HHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHH
Confidence 34455555678999999999743 22111 0111111100 00000000 0
Q ss_pred --eeEEEccCCHH---HHHHHHHHHHh----------cCCeEEEEecCccChHHHHHHHHhhC----------CCCcEE-
Q 006476 277 --IKTHLSAFSKE---KVISAIKYELD----------RGGQVFYVLPRIKGLEEPMDFLQQAF----------PGVDIA- 330 (643)
Q Consensus 277 --v~~~~~~~~~~---~~~~~i~~~l~----------~~~qvlvf~~~~~~~e~l~~~L~~~~----------p~~~v~- 330 (643)
+........+. .+...+..... .+++++|||+++..+..+++.|.... ++.++.
T Consensus 499 ~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~av 578 (1038)
T 2w00_A 499 SAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIAT 578 (1038)
T ss_dssp HHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEE
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEE
Confidence 00000000111 22233333221 34689999999999999999998763 124554
Q ss_pred EEeCC----------C----------CH-----------------------------HHHHHHHHHHhcCCceEEEeccc
Q 006476 331 IAHGQ----------Q----------YS-----------------------------RQLEETMEKFAQGAIKILICTNI 361 (643)
Q Consensus 331 ~~hg~----------~----------~~-----------------------------~~r~~v~~~F~~g~~~ILVaT~i 361 (643)
++||+ + ++ .+|+.++++|++|+++|||+|++
T Consensus 579 v~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~ 658 (1038)
T 2w00_A 579 IFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGM 658 (1038)
T ss_dssp ECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESST
T ss_pred EEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcch
Confidence 45542 2 22 14788999999999999999999
Q ss_pred ccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCc----eEEEEEec
Q 006476 362 VESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE----AHAYLFYP 408 (643)
Q Consensus 362 ~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~----g~a~~l~~ 408 (643)
+.+|+|+|.+ .++.+|.|. +...|+|++||++|.++. |.++.|..
T Consensus 659 lltGfDiP~l-~tlylDkpl-~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 659 FLTGFDAPTL-NTLFVDKNL-RYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp TSSSCCCTTE-EEEEEESCC-CHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHhCcCcccc-cEEEEccCC-CccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999 566788886 889999999999999753 77777664
No 58
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=6e-27 Score=268.73 Aligned_cols=166 Identities=20% Similarity=0.273 Sum_probs=128.9
Q ss_pred CceEEEeccCCChHhHHHHHhcCCCcceeeCCCCCccceeEEEccC--CHHHHHHHHHHHHhcCCeEEEEecCccChHHH
Q 006476 239 SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAF--SKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 316 (643)
Q Consensus 239 ~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~--~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l 316 (643)
..+++++||||.+...... ... ......+..-..|... +... ....+...+......+.+++|||+++..++.+
T Consensus 380 ~~q~i~~SAT~~~~~~~~~-~~~--~~~~~r~~~l~~p~i~-v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L 455 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAHS-GRV--VEQIIRPTGLLDPLVR-VKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEEL 455 (664)
T ss_dssp CSEEEEEESSCCHHHHHHC-SEE--EEECSCTTCCCCCEEE-EECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred cCCEEEEecCCCHHHHHhh-hCe--eeeeeccCCCCCCeEE-EecccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHH
Confidence 5789999999976543220 000 0111111111122211 2222 22445566666667889999999999999999
Q ss_pred HHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecC-----CCCCHHHHHHHH
Q 006476 317 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV-----QQFGLAQLYQLR 391 (643)
Q Consensus 317 ~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~-----p~~s~~~~~Qr~ 391 (643)
++.|... ++++..+||+|++.+|.+++++|++|+++|||||+++++|+|+|++++||++|. |. +..+|+||+
T Consensus 456 ~~~L~~~--gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~-s~~~~iQr~ 532 (664)
T 1c4o_A 456 TSFLVEH--GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLR-SERSLIQTI 532 (664)
T ss_dssp HHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGG-SHHHHHHHH
T ss_pred HHHHHhc--CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCC-CHHHHHHHH
Confidence 9999998 889999999999999999999999999999999999999999999999999998 54 788999999
Q ss_pred hccCCCCCceEEEEEecCCCC
Q 006476 392 GRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 392 GR~GR~g~~g~a~~l~~~~~~ 412 (643)
||+||.+ .|.|++++++.+.
T Consensus 533 GRagR~~-~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 533 GRAARNA-RGEVWLYADRVSE 552 (664)
T ss_dssp GGGTTST-TCEEEEECSSCCH
T ss_pred CccCcCC-CCEEEEEEcCCCH
Confidence 9999995 8999999988754
No 59
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.8e-28 Score=284.30 Aligned_cols=311 Identities=15% Similarity=0.171 Sum_probs=219.9
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHH---HCCCeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV---SAGKQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~---~~g~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
.+|+|+|.+++..+...+ ..+.+.|++.+||+|||++++..+.... ...+.+||+|| ..|+.||.++|.+.+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~---~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~- 309 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLW---SKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWA- 309 (800)
T ss_dssp SCCCTHHHHHHHHHHHHH---TTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHS-
T ss_pred CCcCHHHHHHHHHHHHHh---hcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHC-
Confidence 489999999999887543 2367899999999999999877665443 33567999999 678899999998743
Q ss_pred CCCCceEEEEeCCCChHHHHHHHH--------HHhcCCceEEEechHhhhccc---ccCccceEEeecccccc---hhHH
Q 006476 165 KYPDIKVGLLSRFQSKAEKEEHLD--------MIKHGHLNIIVGTHSLLGSRV---VYNNLGLLVVDEEQRFG---VKQK 230 (643)
Q Consensus 165 ~~~~i~v~~l~g~~~~~~~~~~~~--------~l~~g~~dIiI~T~~~L~~~~---~~~~l~llViDEah~~g---~~~~ 230 (643)
|++++..++|............ ....++.+|+|+|++.+.... .-.++++|||||||++. ....
T Consensus 310 --p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~ 387 (800)
T 3mwy_W 310 --PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLY 387 (800)
T ss_dssp --TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHH
T ss_pred --CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHH
Confidence 4688888888543322211111 123456899999999887543 22468999999999982 3344
Q ss_pred HHHHhcCCCceEEEeccCCChHhHHHHH---hcC------------------------------CCcceee---------
Q 006476 231 EKIASFKISVDVLTLSATPIPRTLYLAL---TGF------------------------------RDASLIS--------- 268 (643)
Q Consensus 231 ~~l~~~~~~~~vl~lSATp~~~~~~~~~---~~~------------------------------~~~~~i~--------- 268 (643)
..+..+ .....++|||||..+.....+ ..+ ..+.++.
T Consensus 388 ~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~ 466 (800)
T 3mwy_W 388 ESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKS 466 (800)
T ss_dssp HHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTT
T ss_pred HHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhc
Confidence 555555 455678899999643321111 000 0000000
Q ss_pred CCCCCccceeEEEccCCH--------------------------------------------------------------
Q 006476 269 TPPPERLPIKTHLSAFSK-------------------------------------------------------------- 286 (643)
Q Consensus 269 ~~~~~~~~v~~~~~~~~~-------------------------------------------------------------- 286 (643)
.|+.....+ ....+.
T Consensus 467 LP~k~~~~v---~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~ 543 (800)
T 3mwy_W 467 LPSKTERIL---RVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMT 543 (800)
T ss_dssp SCCEEEEEE---EECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CC
T ss_pred cCCcEEEEE---EeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhccccccc
Confidence 111000000 000000
Q ss_pred ---------------HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcC
Q 006476 287 ---------------EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG 351 (643)
Q Consensus 287 ---------------~~~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g 351 (643)
..+...+.+....+.+++||+..+..++.+.+.|... ++.+..+||+++..+|++++++|+++
T Consensus 544 ~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~eR~~~i~~F~~~ 621 (800)
T 3mwy_W 544 RENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK--GINFQRLDGTVPSAQRRISIDHFNSP 621 (800)
T ss_dssp SHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH--TCCCEEESTTSCHHHHHHHHHTTSST
T ss_pred HHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhCC
Confidence 0011222223345789999999999999999999988 89999999999999999999999986
Q ss_pred Cc---eEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCc--eEEEEEecCCCC
Q 006476 352 AI---KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE--AHAYLFYPDKSL 412 (643)
Q Consensus 352 ~~---~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~--g~a~~l~~~~~~ 412 (643)
.. .+|+||.+++.|+|++.+++||++|++. ++..+.|++||++|.|+. ..+|.|++...+
T Consensus 622 ~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~w-np~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 622 DSNDFVFLLSTRAGGLGINLMTADTVVIFDSDW-NPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 686 (800)
T ss_dssp TCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCS-CSHHHHHHHTTTSCSSCCSCEEEEEEEETTSH
T ss_pred CCCceEEEEecccccCCCCccccceEEEecCCC-ChhhHHHHHHHHHhcCCCceEEEEEEecCCCH
Confidence 54 4999999999999999999999999995 999999999999999864 567778887753
No 60
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=3.9e-26 Score=261.83 Aligned_cols=165 Identities=20% Similarity=0.305 Sum_probs=129.5
Q ss_pred CceEEEeccCCChHhHHHHHhcCCCcceeeCCC-CCccceeEEEccC--CHHHHHHHHHHHHhcCCeEEEEecCccChHH
Q 006476 239 SVDVLTLSATPIPRTLYLALTGFRDASLISTPP-PERLPIKTHLSAF--SKEKVISAIKYELDRGGQVFYVLPRIKGLEE 315 (643)
Q Consensus 239 ~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~-~~~~~v~~~~~~~--~~~~~~~~i~~~l~~~~qvlvf~~~~~~~e~ 315 (643)
..|++++||||.+..... . .........+ .-..|.. .+... ....+...+......+++++|||+++..++.
T Consensus 386 ~~q~i~~SAT~~~~~~~~--~--~~~~~~~~r~~~l~~p~i-~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~ 460 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH--T--DEMVEQIIRPTGLLDPLI-DVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSED 460 (661)
T ss_dssp CSEEEEECSSCCHHHHHH--C--SSCEEECCCTTCCCCCEE-EEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHH
T ss_pred CCCEEEEecCCChhHHHh--h--hCeeeeeecccCCCCCeE-EEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHH
Confidence 678999999997665332 1 1111111111 1112221 12222 2244556666666778999999999999999
Q ss_pred HHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecC-----CCCCHHHHHHH
Q 006476 316 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV-----QQFGLAQLYQL 390 (643)
Q Consensus 316 l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~-----p~~s~~~~~Qr 390 (643)
+++.|... ++++..+||++++.+|.+++++|++|+++|||||+++++|+|+|++++||+++. |. +..+|+||
T Consensus 461 L~~~L~~~--gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~-s~~~~iQr 537 (661)
T 2d7d_A 461 LTDYLKEI--GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLR-SERSLIQT 537 (661)
T ss_dssp HHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTT-SHHHHHHH
T ss_pred HHHHHHhc--CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCC-CHHHHHHH
Confidence 99999998 889999999999999999999999999999999999999999999999999998 55 78999999
Q ss_pred HhccCCCCCceEEEEEecCCCC
Q 006476 391 RGRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 391 ~GR~GR~g~~g~a~~l~~~~~~ 412 (643)
+||+||. ..|.|++++++.+.
T Consensus 538 ~GRagR~-~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 538 IGRAARN-AEGRVIMYADKITK 558 (661)
T ss_dssp HHTTTTS-TTCEEEEECSSCCH
T ss_pred hCcccCC-CCCEEEEEEeCCCH
Confidence 9999998 78999999988743
No 61
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.94 E-value=2.4e-25 Score=224.42 Aligned_cols=187 Identities=22% Similarity=0.165 Sum_probs=150.6
Q ss_pred CCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH--------CCCeEE
Q 006476 73 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--------AGKQAM 143 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~--------~g~~vl 143 (643)
++.++ +.+.+.+.++..|||+|.+|++.+++ ++|+++++|||||||++|++|++..+. .+++++
T Consensus 34 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~l 106 (242)
T 3fe2_A 34 ANFPANVMDVIARQNFTEPTAIQAQGWPVALS-------GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICL 106 (242)
T ss_dssp TTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHH-------TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEE
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEE
Confidence 34445 77888888887899999999999876 579999999999999999999988765 367899
Q ss_pred EEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEE
Q 006476 144 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLV 218 (643)
Q Consensus 144 il~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llV 218 (643)
|++||++|+.|+++.+.+..... ++++..++|+.+..... ..+..+ ++|+|+||++|.+ ...++++++||
T Consensus 107 il~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~---~~~~~~-~~I~v~Tp~~l~~~l~~~~~~~~~~~~lV 181 (242)
T 3fe2_A 107 VLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQI---RDLERG-VEICIATPGRLIDFLECGKTNLRRTTYLV 181 (242)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHH---HHHHHC-CSEEEECHHHHHHHHHHTSCCCTTCCEEE
T ss_pred EEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHH---HHhcCC-CCEEEECHHHHHHHHHcCCCCcccccEEE
Confidence 99999999999999998754444 78999999987765543 334444 8999999998864 34578999999
Q ss_pred eecccccch-----hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCCC
Q 006476 219 VDEEQRFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPP 271 (643)
Q Consensus 219 iDEah~~g~-----~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~ 271 (643)
+||||++.. .....+..++++.|++++|||+++.........+.++..+...+
T Consensus 182 iDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 182 LDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp ETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred EeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999998532 23445566678899999999999988888888888877766543
No 62
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=6.5e-25 Score=217.53 Aligned_cols=196 Identities=18% Similarity=0.136 Sum_probs=150.8
Q ss_pred HHHHHcCCCCCCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC--
Q 006476 62 YLHRLKQKRPPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-- 138 (643)
Q Consensus 62 ~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-- 138 (643)
|..........++.++ +.+.+.+.++..|+|+|.+|++.+++ ++|+++++|||+|||++|+.+++..+..
T Consensus 8 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~li~~~TGsGKT~~~~~~~~~~~~~~~ 80 (220)
T 1t6n_A 8 YVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL-------GMDVLCQAKSGMGKTAVFVLATLQQLEPVT 80 (220)
T ss_dssp ------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHCCCCT
T ss_pred cccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCCchhhhhhHHHHHhhhccC
Confidence 3333444556666666 88888887777899999999999875 4789999999999999999999887654
Q ss_pred -CCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccC
Q 006476 139 -GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYN 212 (643)
Q Consensus 139 -g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~ 212 (643)
+.+++|++||++|+.|+++++.+.....+++++..++|+.+.... ...+..+.++|+|+||+.+.+ ...+.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~ 157 (220)
T 1t6n_A 81 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKD---EEVLKKNCPHIVVGTPGRILALARNKSLNLK 157 (220)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHH---HHHHHHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHH---HHHHhcCCCCEEEeCHHHHHHHHHhCCCCcc
Confidence 458999999999999999999875555567999999998766543 334455668999999998864 34568
Q ss_pred ccceEEeecccccch--hH----HHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCccee
Q 006476 213 NLGLLVVDEEQRFGV--KQ----KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI 267 (643)
Q Consensus 213 ~l~llViDEah~~g~--~~----~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i 267 (643)
+++++|+||||++.. .. ...+...+.+.+++++|||+++.........+.++..+
T Consensus 158 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 158 HIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp TCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEE
T ss_pred cCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEE
Confidence 899999999998732 11 22344456689999999999888888777777776554
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.93 E-value=3.5e-25 Score=220.81 Aligned_cols=177 Identities=23% Similarity=0.263 Sum_probs=140.0
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---------CCCeEEEEecc
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---------AGKQAMVLAPT 148 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---------~g~~vlil~Pt 148 (643)
+.+.+.+.++..|||+|.+|++.+++ ++|+++++|||||||++|++|++..+. .+++++|++||
T Consensus 31 l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt 103 (228)
T 3iuy_A 31 LLKSIIRVGILKPTPIQSQAWPIILQ-------GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPT 103 (228)
T ss_dssp HHHHHHHHTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSS
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCC
Confidence 77788888888999999999999875 578999999999999999999887653 57789999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeeccc
Q 006476 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQ 223 (643)
Q Consensus 149 ~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDEah 223 (643)
++|+.|+++++.+ +.. .++++..++|+.+... ....+..+ ++|+|+||+++.+ ...++++++||+||||
T Consensus 104 ~~L~~q~~~~~~~-~~~-~~~~~~~~~~~~~~~~---~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah 177 (228)
T 3iuy_A 104 RELALHVEAECSK-YSY-KGLKSICIYGGRNRNG---QIEDISKG-VDIIIATPGRLNDLQMNNSVNLRSITYLVIDEAD 177 (228)
T ss_dssp HHHHHHHHHHHHH-HCC-TTCCEEEECC---------CHHHHHSC-CSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHH
T ss_pred HHHHHHHHHHHHH-hcc-cCceEEEEECCCChHH---HHHHhcCC-CCEEEECHHHHHHHHHcCCcCcccceEEEEECHH
Confidence 9999999999987 443 3688888888665443 23334444 8999999998864 3457889999999999
Q ss_pred ccc-----hhHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCccee
Q 006476 224 RFG-----VKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI 267 (643)
Q Consensus 224 ~~g-----~~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i 267 (643)
++. ......+..++++.|++++|||+++.........+.++..+
T Consensus 178 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 226 (228)
T 3iuy_A 178 KMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIV 226 (228)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEE
T ss_pred HHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEE
Confidence 853 23345566677899999999999998888888777766544
No 64
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=4.8e-24 Score=241.99 Aligned_cols=126 Identities=20% Similarity=0.160 Sum_probs=104.3
Q ss_pred hcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHh
Q 006476 84 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERF 163 (643)
Q Consensus 84 ~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~ 163 (643)
....+.|||+|..+++.++. |. ++++.||+|||++|.+|++.....|++|+|++||++||.|+++.+...+
T Consensus 74 R~lG~~Pt~VQ~~~ip~Llq-------G~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 74 RYLGMRHFDVQLIGGAVLHE-------GK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp HHTCCCCCHHHHHHHHHHHT-------TS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHhhcccccC-------Cc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 34567999999999999864 33 9999999999999999997666778999999999999999999999855
Q ss_pred cCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhh-----cc-------cccC---ccceEEeeccccc
Q 006476 164 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-----SR-------VVYN---NLGLLVVDEEQRF 225 (643)
Q Consensus 164 ~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~-----~~-------~~~~---~l~llViDEah~~ 225 (643)
. +.|+++++++|+.+...+.... + +||+||||++|. +. +.++ +++++||||+|++
T Consensus 145 ~-~lGLsv~~i~Gg~~~~~r~~ay-----~-~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsm 214 (997)
T 2ipc_A 145 R-GLGLSVGVIQHASTPAERRKAY-----L-ADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSI 214 (997)
T ss_dssp H-TTTCCEEECCTTCCHHHHHHHH-----T-SSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHH
T ss_pred H-hcCCeEEEEeCCCCHHHHHHHc-----C-CCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHH
Confidence 5 4489999999988765444332 3 899999999982 22 3467 8999999999963
No 65
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.93 E-value=7.7e-25 Score=223.56 Aligned_cols=175 Identities=25% Similarity=0.266 Sum_probs=142.9
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-------CCCeEEEEeccHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-------AGKQAMVLAPTIV 150 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-------~g~~vlil~Pt~~ 150 (643)
+.+.+.+.++..|+|+|.+|++.++. ++|++++||||||||++|++|++..+. .+.+++|++||++
T Consensus 65 l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~ 137 (262)
T 3ly5_A 65 TLKAIKEMGFTNMTEIQHKSIRPLLE-------GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRE 137 (262)
T ss_dssp HHHHHHHTTCCBCCHHHHHHHHHHHH-------TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhC-------CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHH
Confidence 78888888888899999999999976 478999999999999999999988764 4789999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc------ccccCccceEEeecccc
Q 006476 151 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDEEQR 224 (643)
Q Consensus 151 La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~------~~~~~~l~llViDEah~ 224 (643)
||.|+++.+++.+... +..+..+.|+..... ....+..+ ++|+|+||+++.+ ...++++++||+||||+
T Consensus 138 La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~---~~~~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~ 212 (262)
T 3ly5_A 138 LAMQTFGVLKELMTHH-VHTYGLIMGGSNRSA---EAQKLGNG-INIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADR 212 (262)
T ss_dssp HHHHHHHHHHHHTTTC-CSCEEEECSSSCHHH---HHHHHHHC-CSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHH
T ss_pred HHHHHHHHHHHHHhhc-CceEEEEECCCCHHH---HHHHhcCC-CCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHH
Confidence 9999999999865544 688999998766544 33445556 8999999998854 24578899999999998
Q ss_pred cc-----hhHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCc
Q 006476 225 FG-----VKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 264 (643)
Q Consensus 225 ~g-----~~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~ 264 (643)
+. ......+..++.+.|+++||||+++....+....+.+.
T Consensus 213 l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 213 ILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp HHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred HhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 52 22344556667889999999999998888777666543
No 66
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.93 E-value=1.8e-24 Score=216.86 Aligned_cols=186 Identities=23% Similarity=0.242 Sum_probs=147.2
Q ss_pred CCCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-------CCCeE
Q 006476 71 PPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-------AGKQA 142 (643)
Q Consensus 71 ~~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-------~g~~v 142 (643)
..++.++ +.+.+.+.++..|+|+|.++++.+++ ++|+++++|||+|||++|+.|++..+. .+.++
T Consensus 28 ~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~-------~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 100 (236)
T 2pl3_A 28 SDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQ-------GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGV 100 (236)
T ss_dssp GGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred hhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceE
Confidence 3455565 78889988888999999999999875 578999999999999999999987763 47799
Q ss_pred EEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc------cccCccce
Q 006476 143 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNLGL 216 (643)
Q Consensus 143 lil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~------~~~~~l~l 216 (643)
+|++||++|+.|+++.+.+. ....++++..++|+.+.......+ +.++|+|+||+.+.+. ..+.++++
T Consensus 101 lil~Pt~~L~~q~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~ 174 (236)
T 2pl3_A 101 LIISPTRELAYQTFEVLRKV-GKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATDLQM 174 (236)
T ss_dssp EEECSSHHHHHHHHHHHHHH-TTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTTCCE
T ss_pred EEEeCCHHHHHHHHHHHHHH-hCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccccccE
Confidence 99999999999999999874 444468999999876654433322 3589999999988542 44678999
Q ss_pred EEeecccccc---h--hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeC
Q 006476 217 LVVDEEQRFG---V--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269 (643)
Q Consensus 217 lViDEah~~g---~--~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~ 269 (643)
||+||||++. + .....+..++.+.+++++|||+++....+....+.++..+..
T Consensus 175 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~ 232 (236)
T 2pl3_A 175 LVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232 (236)
T ss_dssp EEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEEC
T ss_pred EEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEe
Confidence 9999999863 2 223445666778999999999999888888888877776654
No 67
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.93 E-value=1e-24 Score=217.96 Aligned_cols=186 Identities=19% Similarity=0.159 Sum_probs=145.6
Q ss_pred CCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---CCCeEEEEec
Q 006476 72 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAP 147 (643)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---~g~~vlil~P 147 (643)
.++.++ +.+.+.+.++..|+|+|.++++.+++ ++|+++++|||+|||++|+++++..+. .+++++|++|
T Consensus 28 ~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 100 (230)
T 2oxc_A 28 SLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRC-------GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAP 100 (230)
T ss_dssp GGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 344555 77888887777899999999999865 578999999999999999999987753 3579999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeecc
Q 006476 148 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEE 222 (643)
Q Consensus 148 t~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDEa 222 (643)
|++|+.|+++++.+.....+++++..++|+.........+ ..++|+|+||+.+.+ .+.+.++++||+|||
T Consensus 101 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEa 175 (230)
T 2oxc_A 101 TREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEA 175 (230)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSH
T ss_pred CHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCc
Confidence 9999999999999855555578999999987665543322 248999999998864 345678899999999
Q ss_pred cccc----hh--HHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeC
Q 006476 223 QRFG----VK--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269 (643)
Q Consensus 223 h~~g----~~--~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~ 269 (643)
|++. +. ....+..++.+.|++++|||+++.........+.++..+..
T Consensus 176 h~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 176 DKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp HHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred hHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9962 21 22345566678999999999988777766666666665543
No 68
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=1.5e-24 Score=212.45 Aligned_cols=184 Identities=16% Similarity=0.114 Sum_probs=145.2
Q ss_pred CCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---CCCeEEEEec
Q 006476 72 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAP 147 (643)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---~g~~vlil~P 147 (643)
.++.++ +.+.+.+.++..|+|+|.++++.+++ ++|+++++|||+|||++|+.|++..+. .+.+++|++|
T Consensus 7 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 79 (206)
T 1vec_A 7 DYCLKRELLMGIFEMGWEKPSPIQEESIPIALS-------GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVP 79 (206)
T ss_dssp GSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHT-------TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHcc-------CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeC
Confidence 455566 88888888888999999999999875 478999999999999999999988754 3568999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeecc
Q 006476 148 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEE 222 (643)
Q Consensus 148 t~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDEa 222 (643)
|++|+.|+++.+.+.....+++++..++|+.+.... ...+. +.++|+|+||+.+.+ ...+++++++|+|||
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~-~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 155 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDD---IMRLD-DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 155 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHH---HHHTT-SCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETH
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHH---HHhcC-CCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEECh
Confidence 999999999999986665557899999987765443 23333 458999999998854 235678999999999
Q ss_pred cccch-----hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcce
Q 006476 223 QRFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 266 (643)
Q Consensus 223 h~~g~-----~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~ 266 (643)
|++.. .....+..++.+.+++++|||+++.........+.++..
T Consensus 156 h~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~ 204 (206)
T 1vec_A 156 DKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYE 204 (206)
T ss_dssp HHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEE
T ss_pred HHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeE
Confidence 98632 122334555668999999999988887777777665543
No 69
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.93 E-value=7e-25 Score=220.32 Aligned_cols=187 Identities=21% Similarity=0.181 Sum_probs=141.6
Q ss_pred CCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---CCCeEEEEec
Q 006476 72 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAP 147 (643)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---~g~~vlil~P 147 (643)
.++.++ +.+.+.+.++..|||+|.+|++.+++ ++|+++++|||||||++|+.+++..+. .+.+++|++|
T Consensus 34 ~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~-------~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 106 (237)
T 3bor_A 34 DMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIK-------GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAP 106 (237)
T ss_dssp GSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT-------TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 345555 77888888887899999999999875 478999999999999999999998764 4679999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEeecc
Q 006476 148 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEE 222 (643)
Q Consensus 148 t~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViDEa 222 (643)
|++|+.|+++.+.+ +....++.+..+.|+.... ..+..+..+.++|+|+||+.|.+. ..+.++++||+|||
T Consensus 107 t~~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEa 182 (237)
T 3bor_A 107 TRELAQQIQKVILA-LGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEA 182 (237)
T ss_dssp SHHHHHHHHHHHHH-HTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESH
T ss_pred cHHHHHHHHHHHHH-HhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCc
Confidence 99999999999987 4444468888888765433 244556667799999999987642 45678999999999
Q ss_pred cccch-----hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeC
Q 006476 223 QRFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269 (643)
Q Consensus 223 h~~g~-----~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~ 269 (643)
|++.. .....+..++.+.+++++|||+++.........+.++..+..
T Consensus 183 h~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 183 DEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred hHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 98632 223445666788999999999999888888887777766544
No 70
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.92 E-value=9.7e-25 Score=216.35 Aligned_cols=187 Identities=22% Similarity=0.215 Sum_probs=146.8
Q ss_pred CCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---CCCeEEEEec
Q 006476 72 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAP 147 (643)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---~g~~vlil~P 147 (643)
.++.++ +.+.+.+.++..|+|+|.++++.+++ ++|+++++|||+|||++|+.+++..+. .+.+++|++|
T Consensus 8 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 80 (219)
T 1q0u_A 8 RFPFQPFIIEAIKTLRFYKPTEIQERIIPGALR-------GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAP 80 (219)
T ss_dssp GSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHH-------TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred hCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcC
Confidence 455566 88899999999999999999999976 478999999999999999999988764 3578999999
Q ss_pred cHHHHHHHHHHHHHHhcCCC---CceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEe
Q 006476 148 TIVLAKQHFDVVSERFSKYP---DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVV 219 (643)
Q Consensus 148 t~~La~Q~~~~~~~~~~~~~---~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llVi 219 (643)
|++|+.|+++++.+.....+ ++++..++|+.+... ..+.+. +.++|+|+||+.+.+ ...+.+++++|+
T Consensus 81 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 81 TRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQK---ALEKLN-VQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp SHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHH---TTCCCS-SCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred cHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHH---HHHHcC-CCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 99999999999987554332 578888888654332 222222 358999999998864 345688999999
Q ss_pred ecccccch-----hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeC
Q 006476 220 DEEQRFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269 (643)
Q Consensus 220 DEah~~g~-----~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~ 269 (643)
||||++.. .....+..++.+.+++++|||+++.........+.++..+..
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 99998632 223445566678999999999988888888888888766654
No 71
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.92 E-value=4.6e-24 Score=216.13 Aligned_cols=188 Identities=18% Similarity=0.071 Sum_probs=148.6
Q ss_pred CCCCCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC---CCeEEEE
Q 006476 70 RPPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVL 145 (643)
Q Consensus 70 ~~~~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~---g~~vlil 145 (643)
...++.++ +.+.+.+.++..|+|+|.+|++.+++ ++|+++++|||||||++|+.+++..+.. +.+++|+
T Consensus 45 f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-------~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil 117 (249)
T 3ber_A 45 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQ-------GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVL 117 (249)
T ss_dssp TGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred HHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC-------CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEE
Confidence 44455566 78888888888999999999999875 5789999999999999999999877643 4579999
Q ss_pred eccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc------ccccCccceEEe
Q 006476 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVV 219 (643)
Q Consensus 146 ~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~------~~~~~~l~llVi 219 (643)
+||++|+.|+++.+.+..... ++++..++|+.+...... .+. +.++|+|+||++|.+ ...+.++++||+
T Consensus 118 ~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~---~~~-~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 118 TPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSL---ALA-KKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHH---HHH-TCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred eCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHH---Hhc-CCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 999999999999998754443 689999999776554332 233 458999999998854 235678999999
Q ss_pred ecccccch-----hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeC
Q 006476 220 DEEQRFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 269 (643)
Q Consensus 220 DEah~~g~-----~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~ 269 (643)
||||++.. .....+..++.+.+++++|||+++.........+.++..+..
T Consensus 193 DEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 193 DEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp CSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99998632 223445666678999999999998888888888877766644
No 72
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.92 E-value=1.4e-24 Score=226.03 Aligned_cols=184 Identities=21% Similarity=0.182 Sum_probs=146.9
Q ss_pred CCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC---CCeEEEEeccHH
Q 006476 75 KNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIV 150 (643)
Q Consensus 75 ~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~---g~~vlil~Pt~~ 150 (643)
.++ +.+.+.+.++..|||+|.+||+.+++ ..++|+++++|||||||++|++|++..+.. +++++|++||++
T Consensus 99 l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~-----~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~Ptre 173 (300)
T 3fmo_B 99 LKPQLLQGVYAMGFNRPSKIQENALPLMLA-----EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYE 173 (300)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHTS-----SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHHc-----CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHH
Confidence 344 78889999999999999999999964 235899999999999999999999987643 458999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc------ccccCccceEEeecccc
Q 006476 151 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDEEQR 224 (643)
Q Consensus 151 La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~------~~~~~~l~llViDEah~ 224 (643)
||.|+++.+......++++.+..+.|+...... ....++|+||||++|.+ .+.++++++|||||||+
T Consensus 174 La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~ 246 (300)
T 3fmo_B 174 LALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (300)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH
Confidence 999999999875444567899988886543221 12458999999999854 34568999999999998
Q ss_pred cch----h--HHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCC
Q 006476 225 FGV----K--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTP 270 (643)
Q Consensus 225 ~g~----~--~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~ 270 (643)
+.. . ....+..++.+.|++++|||++.....++...+.++..|...
T Consensus 247 l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 632 1 123344556789999999999999999998888888777653
No 73
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.92 E-value=6.4e-24 Score=207.92 Aligned_cols=182 Identities=21% Similarity=0.167 Sum_probs=144.0
Q ss_pred CCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH------CCCeEEEE
Q 006476 73 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVL 145 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~------~g~~vlil 145 (643)
++.++ +.+.+.+.++..|+|+|.++++.+++ ++++++++|||+|||++|+.+++..+. .+++++|+
T Consensus 6 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~-------~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil 78 (207)
T 2gxq_A 6 FPLKPEILEALHGRGLTTPTPIQAAALPLALE-------GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVL 78 (207)
T ss_dssp SCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEE
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcC-------CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEE
Confidence 45555 78889988888999999999999875 478999999999999999999988763 46789999
Q ss_pred eccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEee
Q 006476 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVD 220 (643)
Q Consensus 146 ~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViD 220 (643)
+||++|+.|+++++.+.+. ++++..++|+.+...... .+..+ ++|+|+||+.+.+ ...+.++++||+|
T Consensus 79 ~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViD 151 (207)
T 2gxq_A 79 TPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKE---ALLRG-ADAVVATPGRALDYLRQGVLDLSRVEVAVLD 151 (207)
T ss_dssp CSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHH---HHHHC-CSEEEECHHHHHHHHHHTSSCCTTCSEEEEE
T ss_pred ECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHH---HhhCC-CCEEEECHHHHHHHHHcCCcchhhceEEEEE
Confidence 9999999999999987543 367888888766544332 23334 8999999998754 3456889999999
Q ss_pred cccccch-----hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceee
Q 006476 221 EEQRFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 268 (643)
Q Consensus 221 Eah~~g~-----~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~ 268 (643)
|||++.. .....+...+.+.+++++|||+++.........+.++..+.
T Consensus 152 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 152 EADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred ChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEE
Confidence 9998632 22334455667899999999998887777777777766554
No 74
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.7e-24 Score=218.34 Aligned_cols=183 Identities=17% Similarity=0.121 Sum_probs=140.2
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH----CCCeEEEEeccHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS----AGKQAMVLAPTIVLAK 153 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~----~g~~vlil~Pt~~La~ 153 (643)
+.+.+.+.++..|||+|.+|++.+++ ++|+++++|||||||++|++|++..+. .+.+++|++||++|+.
T Consensus 40 l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~ 112 (245)
T 3dkp_A 40 LLQNILDAGFQMPTPIQMQAIPVMLH-------GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELAS 112 (245)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHH
Confidence 66778888888999999999999875 478999999999999999999998875 3668999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-------ccccCccceEEeecccccc
Q 006476 154 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-------RVVYNNLGLLVVDEEQRFG 226 (643)
Q Consensus 154 Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-------~~~~~~l~llViDEah~~g 226 (643)
|+++++.+.+... ++++..++++... ...+.....+.++|+|+||++|.+ ...+.++++||+||||++.
T Consensus 113 q~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~ 188 (245)
T 3dkp_A 113 QIHRELIKISEGT-GFRIHMIHKAAVA---AKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLF 188 (245)
T ss_dssp HHHHHHHHHTTTS-CCCEECCCHHHHH---HTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHH
T ss_pred HHHHHHHHHhccc-CceEEEEecCccH---HHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhc
Confidence 9999999855443 6777777653211 111222334568999999998853 2456789999999999874
Q ss_pred h----hHH----HHHHhc-CCCceEEEeccCCChHhHHHHHhcCCCcceeeCCC
Q 006476 227 V----KQK----EKIASF-KISVDVLTLSATPIPRTLYLALTGFRDASLISTPP 271 (643)
Q Consensus 227 ~----~~~----~~l~~~-~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~~ 271 (643)
. ... ..+... ..+.++++||||+++.........+.++..+...+
T Consensus 189 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 189 EDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp HHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred ccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 2 122 222332 45789999999998888888888888777666543
No 75
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.92 E-value=3.3e-24 Score=212.93 Aligned_cols=185 Identities=24% Similarity=0.164 Sum_probs=140.3
Q ss_pred CCCCh-hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---CCCeEEEEecc
Q 006476 73 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPT 148 (643)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---~g~~vlil~Pt 148 (643)
++.++ +.+.+.+.++..|+|+|.+|++.+++ ++|+++++|||+|||++|+.+++..+. .+++++|++||
T Consensus 19 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (224)
T 1qde_A 19 MELDENLLRGVFGYGFEEPSAIQQRAIMPIIE-------GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 91 (224)
T ss_dssp GTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-------CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence 34455 77888888888999999999999875 478999999999999999999988763 35699999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhc-----ccccCccceEEeeccc
Q 006476 149 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQ 223 (643)
Q Consensus 149 ~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~-----~~~~~~l~llViDEah 223 (643)
++|+.|+++.+.+.. ...++++..++|+.+...... .+ ..++|+|+||+.+.+ ...+.++++||+||||
T Consensus 92 ~~L~~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~---~~--~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah 165 (224)
T 1qde_A 92 RELALQIQKVVMALA-FHMDIKVHACIGGTSFVEDAE---GL--RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 165 (224)
T ss_dssp HHHHHHHHHHHHHHT-TTSCCCEEEECC-------------C--TTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHHh-cccCceEEEEeCCcchHHHHh---cC--CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh
Confidence 999999999998744 434788999988665443322 22 238999999998754 3446789999999999
Q ss_pred ccch-----hHHHHHHhcCCCceEEEeccCCChHhHHHHHhcCCCcceeeCC
Q 006476 224 RFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTP 270 (643)
Q Consensus 224 ~~g~-----~~~~~l~~~~~~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~ 270 (643)
++.. .....+..++++.+++++|||+++.........+.++..+...
T Consensus 166 ~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 166 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred HHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 8632 2234455567789999999999998888888888777666543
No 76
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.92 E-value=4e-24 Score=216.66 Aligned_cols=181 Identities=20% Similarity=0.174 Sum_probs=141.5
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC------------CCeEEEE
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA------------GKQAMVL 145 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~------------g~~vlil 145 (643)
+.+.+.+.++..|||+|.+|++.+++ ++|+++++|||||||++|+.|++..+.. +++++|+
T Consensus 34 l~~~l~~~g~~~~~~~Q~~~i~~i~~-------~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil 106 (253)
T 1wrb_A 34 IRNNILLASYQRPTPIQKNAIPAILE-------HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLIL 106 (253)
T ss_dssp TTTTTTTTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEE
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEE
Confidence 66777778888999999999999875 4789999999999999999999887643 3589999
Q ss_pred eccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----cccCccceEEee
Q 006476 146 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVD 220 (643)
Q Consensus 146 ~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----~~~~~l~llViD 220 (643)
+||++|+.|+++++.+. ....++++..++|+.+.... ...+.. .++|+|+||++|.+. ..++++++||+|
T Consensus 107 ~Pt~~L~~q~~~~~~~~-~~~~~~~~~~~~g~~~~~~~---~~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViD 181 (253)
T 1wrb_A 107 APTRELAIQILSESQKF-SLNTPLRSCVVYGGADTHSQ---IREVQM-GCHLLVATPGRLVDFIEKNKISLEFCKYIVLD 181 (253)
T ss_dssp CSSHHHHHHHHHHHHHH-HTTSSCCEEEECSSSCSHHH---HHHHSS-CCSEEEECHHHHHHHHHTTSBCCTTCCEEEEE
T ss_pred ECCHHHHHHHHHHHHHH-hccCCceEEEEECCCCHHHH---HHHhCC-CCCEEEECHHHHHHHHHcCCCChhhCCEEEEe
Confidence 99999999999999874 44446888888887765443 333444 489999999988642 456888999999
Q ss_pred cccccc---h--hHHHHHHh--cCC--CceEEEeccCCChHhHHHHHhcCCCcceeeCC
Q 006476 221 EEQRFG---V--KQKEKIAS--FKI--SVDVLTLSATPIPRTLYLALTGFRDASLISTP 270 (643)
Q Consensus 221 Eah~~g---~--~~~~~l~~--~~~--~~~vl~lSATp~~~~~~~~~~~~~~~~~i~~~ 270 (643)
|||++. + .....+.. .+. +.|++++|||+++....+....+.++..+...
T Consensus 182 Eah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 182 EADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240 (253)
T ss_dssp THHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred CHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEEC
Confidence 999863 2 22333442 222 68999999999988888888777777666543
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.87 E-value=1.2e-21 Score=185.36 Aligned_cols=132 Identities=21% Similarity=0.307 Sum_probs=113.5
Q ss_pred eeEEEccCCHHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCce
Q 006476 277 IKTHLSAFSKEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIK 354 (643)
Q Consensus 277 v~~~~~~~~~~~~~~~i~~~l--~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ 354 (643)
+..++...........+...+ ..+++++|||+++..++.+++.|... ++.+..+||+|++.+|+.++++|++|+.+
T Consensus 10 i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 87 (163)
T 2hjv_A 10 IEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGGMIQEDRFDVMNEFKRGEYR 87 (163)
T ss_dssp EEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred ceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 444444333333333333333 24679999999999999999999987 89999999999999999999999999999
Q ss_pred EEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 355 ILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 355 ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
|||||+++++|+|+|++++||++|.|. +..+|.||+||+||.|+.|.|++++++.+
T Consensus 88 vlv~T~~~~~Gld~~~~~~Vi~~~~p~-~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 143 (163)
T 2hjv_A 88 YLVATDVAARGIDIENISLVINYDLPL-EKESYVHRTGRTGRAGNKGKAISFVTAFE 143 (163)
T ss_dssp EEEECGGGTTTCCCSCCSEEEESSCCS-SHHHHHHHTTTSSCTTCCEEEEEEECGGG
T ss_pred EEEECChhhcCCchhcCCEEEEeCCCC-CHHHHHHhccccCcCCCCceEEEEecHHH
Confidence 999999999999999999999999996 99999999999999999999999998653
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.86 E-value=2.2e-21 Score=188.49 Aligned_cols=150 Identities=16% Similarity=0.225 Sum_probs=113.2
Q ss_pred HhcCCCcceeeCCCCC--ccceeEEEccCCHHHHHHHHHHHHh-cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeC
Q 006476 258 LTGFRDASLISTPPPE--RLPIKTHLSAFSKEKVISAIKYELD-RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHG 334 (643)
Q Consensus 258 ~~~~~~~~~i~~~~~~--~~~v~~~~~~~~~~~~~~~i~~~l~-~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg 334 (643)
+.++.++..+...... ...+...+...........+.+.+. .+++++|||+++..++.+++.|+.. ++.+..+||
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg 86 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLK--GVEAVAIHG 86 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHH--TCCEEEECT
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeC
Confidence 3444555444443222 2234444444444444555555554 3578999999999999999999988 899999999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceEEEEEecCC
Q 006476 335 QQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 335 ~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~ 410 (643)
+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||++|.|. +..+|.||+||+||.|+.|.|++|+++.
T Consensus 87 ~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~-~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 87 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPE-EIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp TSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCS-SHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCC-CHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 99999999999999999999999999999999999999999999996 9999999999999999999999999875
No 79
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.86 E-value=3e-21 Score=190.69 Aligned_cols=111 Identities=21% Similarity=0.339 Sum_probs=104.4
Q ss_pred hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEe
Q 006476 298 DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 377 (643)
Q Consensus 298 ~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~ 377 (643)
..+++++|||+++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~ 106 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHY 106 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEES
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEEC
Confidence 35789999999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 378 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 378 d~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
|.|. +..+|.||+||+||.|+.|.|++++++.+
T Consensus 107 ~~p~-~~~~~~qr~GR~gR~g~~g~~~~l~~~~~ 139 (212)
T 3eaq_A 107 RLPD-RAEAYQHRSGRTGRAGRGGRVVLLYGPRE 139 (212)
T ss_dssp SCCS-SHHHHHHHHTTBCCCC--BEEEEEECGGG
T ss_pred CCCc-CHHHHHHHhcccCCCCCCCeEEEEEchhH
Confidence 9997 99999999999999999999999998763
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=185.11 Aligned_cols=132 Identities=18% Similarity=0.257 Sum_probs=110.9
Q ss_pred eeEEEccCC-HHHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCc
Q 006476 277 IKTHLSAFS-KEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAI 353 (643)
Q Consensus 277 v~~~~~~~~-~~~~~~~i~~~l~--~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~ 353 (643)
+..++.... .......+...+. .+++++|||+++..++.++..|... +..+..+||+|++.+|+.+++.|++|+.
T Consensus 8 i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f~~g~~ 85 (175)
T 2rb4_A 8 IRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRFRDGKE 85 (175)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHTTSC
T ss_pred ceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 444444333 3334555555554 3579999999999999999999987 8899999999999999999999999999
Q ss_pred eEEEecccccccccccCCCEEEEecCC------CCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 354 KILICTNIVESGLDIQNANTIIVQDVQ------QFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 354 ~ILVaT~i~~~GiDip~v~~VI~~d~p------~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
+|||||+++++|+|+|++++||++|.| . +..+|.||+||+||.|+.|.|++++++.+
T Consensus 86 ~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~-~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 148 (175)
T 2rb4_A 86 KVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEP-DYETYLHRIGRTGRFGKKGLAFNMIEVDE 148 (175)
T ss_dssp SEEEECCSCCTTTCCTTEEEEEESSCCC--CCSC-CHHHHHHHHCBC----CCEEEEEEECGGG
T ss_pred eEEEEecchhcCCCcccCCEEEEeCCCCCccccC-CHHHHHHHhcccccCCCCceEEEEEccch
Confidence 999999999999999999999999999 5 89999999999999999999999998764
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.86 E-value=3e-21 Score=184.30 Aligned_cols=109 Identities=18% Similarity=0.227 Sum_probs=104.6
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEec
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d 378 (643)
.+++++|||+++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||++|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 107 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEEC
Confidence 4579999999999999999999987 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhccCCCCCceEEEEEecCC
Q 006476 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 410 (643)
Q Consensus 379 ~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~ 410 (643)
.|. +..+|.||+||+||.|+.|.|++|+++.
T Consensus 108 ~p~-~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 108 MPE-DSDTYLHRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp CCS-SHHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred CCC-CHHHHHHHhcccccCCCCcEEEEEEcCh
Confidence 997 9999999999999999999999999764
No 82
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.85 E-value=4.1e-21 Score=185.56 Aligned_cols=112 Identities=26% Similarity=0.449 Sum_probs=92.8
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEec
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d 378 (643)
.+++++|||+++..++.+++.|+.. ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||++|
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d 122 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFD 122 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT--TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc--CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeC
Confidence 4689999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhccCCCCCceEEEEEecCCCCC
Q 006476 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLL 413 (643)
Q Consensus 379 ~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~~ 413 (643)
.|. +..+|.||+||+||.|+.|.|++|+++.+..
T Consensus 123 ~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 156 (185)
T 2jgn_A 123 LPS-DIEEYVHRIGRTGRVGNLGLATSFFNERNIN 156 (185)
T ss_dssp CCS-SHHHHHHHHTTBCCTTSCEEEEEEECGGGGG
T ss_pred CCC-CHHHHHHHccccCCCCCCcEEEEEEchhhHH
Confidence 996 9999999999999999999999999877543
No 83
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.85 E-value=2.5e-21 Score=183.38 Aligned_cols=110 Identities=20% Similarity=0.298 Sum_probs=100.7
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEec
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d 378 (643)
.+++++|||++++.++.++..|... +..+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||++|
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYD 106 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeC
Confidence 4689999999999999999999987 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 379 ~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
.|. +..+|.||+||+||.|+.|.|++++++++
T Consensus 107 ~p~-~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 138 (165)
T 1fuk_A 107 LPA-NKENYIHRIGRGGRFGRKGVAINFVTNED 138 (165)
T ss_dssp CCS-SGGGGGGSSCSCC-----CEEEEEEETTT
T ss_pred CCC-CHHHHHHHhcccccCCCCceEEEEEcchH
Confidence 996 99999999999999999999999999774
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.84 E-value=5.2e-21 Score=198.45 Aligned_cols=110 Identities=22% Similarity=0.348 Sum_probs=101.2
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEec
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d 378 (643)
.+++++|||++++.++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||++|
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d 104 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYR 104 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTT--TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcC
Confidence 4789999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhccCCCCCceEEEEEecCCC
Q 006476 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 411 (643)
Q Consensus 379 ~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~ 411 (643)
.|. +...|.||+||+||.|+.|.||+|+++.+
T Consensus 105 ~p~-s~~~y~Qr~GRagR~g~~G~~i~l~~~~e 136 (300)
T 3i32_A 105 MPD-RAEAYQHRSGRTGRAGRGGRVVLLYGPRE 136 (300)
T ss_dssp CCS-STTHHHHHHTCCC-----CEEEEEECSST
T ss_pred CCC-CHHHHHHHccCcCcCCCCceEEEEeChHH
Confidence 997 99999999999999999999999999875
No 85
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.84 E-value=2.2e-20 Score=209.76 Aligned_cols=293 Identities=15% Similarity=0.142 Sum_probs=165.8
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCC
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 166 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~ 166 (643)
.|+|+|.|.+++..+.+.+.. +.++++.+|||+|||++|+.|++.. +++++|++||++|+.|+.+++.. +
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~---~~~~~~~a~TGtGKT~~~l~~~~~~---~~~~~~~~~t~~l~~q~~~~~~~-l--- 74 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKH---GKTLLLNAKPGLGKTVFVEVLGMQL---KKKVLIFTRTHSQLDSIYKNAKL-L--- 74 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHT---TCEEEEECCTTSCHHHHHHHHHHHH---TCEEEEEESCHHHHHHHHHHHGG-G---
T ss_pred CCCCCHHHHHHHHHHHHHHHc---CCCEEEEcCCCCcHHHHHHHHHHhC---CCcEEEEcCCHHHHHHHHHHHHh-c---
Confidence 469999999999988776533 5799999999999999999998754 78999999999999999988765 3
Q ss_pred CCceEEEEeCCCChHH-----------------------------HHHHHHHH--------------hcCCceEEEechH
Q 006476 167 PDIKVGLLSRFQSKAE-----------------------------KEEHLDMI--------------KHGHLNIIVGTHS 203 (643)
Q Consensus 167 ~~i~v~~l~g~~~~~~-----------------------------~~~~~~~l--------------~~g~~dIiI~T~~ 203 (643)
++++..+.|.....- ....|..+ ....+||||+||.
T Consensus 75 -~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~ 153 (540)
T 2vl7_A 75 -GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYP 153 (540)
T ss_dssp -TCCEEEC---------------------------------------------------------CTTGGGCSEEEEETH
T ss_pred -CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChH
Confidence 355555544221000 00011111 0123699999999
Q ss_pred hhhccc-----c-------cCccceEEeecccccch-----------hH----HHHHH----------------------
Q 006476 204 LLGSRV-----V-------YNNLGLLVVDEEQRFGV-----------KQ----KEKIA---------------------- 234 (643)
Q Consensus 204 ~L~~~~-----~-------~~~l~llViDEah~~g~-----------~~----~~~l~---------------------- 234 (643)
.|.++. . +.+..++||||||++.. .. ...+.
T Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~ 233 (540)
T 2vl7_A 154 YLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYINLLID 233 (540)
T ss_dssp HHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 887532 1 34567899999997511 00 00000
Q ss_pred ---hc-----------------------------------------------------------------CC-C------
Q 006476 235 ---SF-----------------------------------------------------------------KI-S------ 239 (643)
Q Consensus 235 ---~~-----------------------------------------------------------------~~-~------ 239 (643)
.. .+ .
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~~~l~ 313 (540)
T 2vl7_A 234 YMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVNQLIE 313 (540)
T ss_dssp HHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHHHHHH
T ss_pred HHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHHHHHH
Confidence 00 00 0
Q ss_pred --ce----EEEeccCCChHhHHHHHhcC-CCcceeeCC-CCCccceeE---EEccCCH-----HHHHHHHHHHHh-cCCe
Q 006476 240 --VD----VLTLSATPIPRTLYLALTGF-RDASLISTP-PPERLPIKT---HLSAFSK-----EKVISAIKYELD-RGGQ 302 (643)
Q Consensus 240 --~~----vl~lSATp~~~~~~~~~~~~-~~~~~i~~~-~~~~~~v~~---~~~~~~~-----~~~~~~i~~~l~-~~~q 302 (643)
.. +|++|||..|.. ++ .+. ..... +.....+.. .-..++. ..+.+.+.+.+. .++.
T Consensus 314 ~~~~~~~~~IltSATL~p~~------~~~~~f-~~~~~~~~g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~~~~~~~g~ 386 (540)
T 2vl7_A 314 DALNVKTFKVLMSGTLPESL------TLTNSY-KIVVNESYGRGEYYYCPNVTSELRKRNSNIPIYSILLKRIYENSSKS 386 (540)
T ss_dssp HHTCCSSCEEEEESSCCTTC------CCTTEE-EEECCCC-CCCEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTCSSE
T ss_pred HhcCccCCeEEEcccCCCCc------ccchhc-CCchhheecCCcceeccccCCCcccccCHHHHHHHHHHHHHHhCCCC
Confidence 11 366777776610 00 000 00000 000000000 0011121 334455555443 4579
Q ss_pred EEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEE--ecccccccccccC----CCEEEE
Q 006476 303 VFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILI--CTNIVESGLDIQN----ANTIIV 376 (643)
Q Consensus 303 vlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILV--aT~i~~~GiDip~----v~~VI~ 376 (643)
++||+++...++.+++.|.. .. ...+|.. ..++++++.|+++. .||+ ||..+++|||+|+ +++||+
T Consensus 387 ~lvff~S~~~~~~v~~~l~~----~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii 458 (540)
T 2vl7_A 387 VLVFFPSYEMLESVRIHLSG----IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVL 458 (540)
T ss_dssp EEEEESCHHHHHHHHTTCTT----SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEEE
T ss_pred EEEEeCCHHHHHHHHHHhcc----Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEEE
Confidence 99999999988888877754 33 4556664 46889999999864 6777 8899999999998 889999
Q ss_pred ecCCCCCH-----------------------------HHHHHHHhccCCC-CCceEEEE
Q 006476 377 QDVQQFGL-----------------------------AQLYQLRGRVGRA-DKEAHAYL 405 (643)
Q Consensus 377 ~d~p~~s~-----------------------------~~~~Qr~GR~GR~-g~~g~a~~ 405 (643)
.+.|--++ ..+.|.+||+-|. +..|..++
T Consensus 459 ~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~l 517 (540)
T 2vl7_A 459 AGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYL 517 (540)
T ss_dssp ESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEE
T ss_pred ECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEE
Confidence 99873222 1345999999998 44565444
No 86
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.83 E-value=2.2e-20 Score=192.40 Aligned_cols=150 Identities=16% Similarity=0.164 Sum_probs=118.9
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC-CeEEEEeccHHHHHHHHHHHHHHhcCC
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKY 166 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g-~~vlil~Pt~~La~Q~~~~~~~~~~~~ 166 (643)
++|+|+|.+|++.++++ .+.++++|||+|||.+++.++...+..+ .+++|++||++|+.|+++++.+ +...
T Consensus 112 ~~l~~~Q~~ai~~~l~~-------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~-~~~~ 183 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVD-YRLF 183 (282)
T ss_dssp CCCCHHHHHHHHHHHHH-------SEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHH-HTSC
T ss_pred cCccHHHHHHHHHHHhc-------CCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH-hccc
Confidence 58999999999988762 4678999999999999988887766555 4999999999999999999987 5555
Q ss_pred CCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc--cccCccceEEeecccccchhHHH-HHHhcCCCceEE
Q 006476 167 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR--VVYNNLGLLVVDEEQRFGVKQKE-KIASFKISVDVL 243 (643)
Q Consensus 167 ~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~--~~~~~l~llViDEah~~g~~~~~-~l~~~~~~~~vl 243 (643)
++..+..+.++..... ...+..+|+|+||+.+.+. ..+.++++||+||||++...... .+..+....+++
T Consensus 184 ~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~~~~~~il~~~~~~~~~l 256 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKF 256 (282)
T ss_dssp CGGGEEECSTTCSSTT-------CCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHTTTCTTCCEEE
T ss_pred ccceEEEEeCCCcchh-------hhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCcccHHHHHHHhhcCCeEE
Confidence 5677888877654322 1114589999999998765 34688999999999999765544 345555789999
Q ss_pred EeccCCChH
Q 006476 244 TLSATPIPR 252 (643)
Q Consensus 244 ~lSATp~~~ 252 (643)
++||||...
T Consensus 257 ~lSATp~~~ 265 (282)
T 1rif_A 257 GLSGSLRDG 265 (282)
T ss_dssp EECSSCCTT
T ss_pred EEeCCCCCc
Confidence 999999654
No 87
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=99.81 E-value=2.6e-19 Score=169.52 Aligned_cols=149 Identities=10% Similarity=0.169 Sum_probs=120.3
Q ss_pred ceeEeeccCCCCCccccCCCCCchHHHHHHHHhcccCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHhhhcCcceE
Q 006476 489 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 568 (643)
Q Consensus 489 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 568 (643)
.+.++++++++||++||++..+|+++|||++.+ .+.+++.++..||.||||++|.+|+|||.+++||.+|+++||.+|
T Consensus 8 ~~~IdL~v~A~IP~~YI~d~~~RL~lYkria~~--~~~eel~~l~~EL~DRFG~lP~~v~~Ll~v~~lK~~a~~lgI~~I 85 (173)
T 2qsr_A 8 NAELILQIDAYLPDTYISDQRHKIEIYKKIRQI--DNRVNYEELQEELIDRFGEYPDVVAYLLEIGLVKSYLDKVFVQRV 85 (173)
T ss_dssp CCEEECCCCCCCCTTTCCCHHHHHHHHHHHHTC--CSHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred CcEEEeCCCccCChhhcCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHCCCcEE
Confidence 678999999999999999999999999999987 678899999999999999999999999999999999999999999
Q ss_pred eecCCEEEEEeccC--HHH-HHHHHHhhcccccccceeeeCCeEEEEEEec-CChHHHHHHHHHHHHHHHhhhhh
Q 006476 569 YASGKMVGMKTNMN--KKV-FKMMIDSMTSEVHRNSLTFEGDQIKAELLLE-LPREQLLNWIFQCLAELYASLPA 639 (643)
Q Consensus 569 ~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 639 (643)
...++.+.+.+..+ ..+ ...+...++....+..+...++.+.+.+... .+..++++.+..+|+.+....++
T Consensus 86 ~~~~~~i~i~f~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~l~i~~~~~~~~~~~~l~~~~~lL~~L~~~~~~ 160 (173)
T 2qsr_A 86 ERKDNKITIQFEKVTQRLFLAQDYFKALSVTNLKAGIAENKGLMELVFDVQNKKDYEILEGLLIFGESLLEIKES 160 (173)
T ss_dssp EECSSEEEEEECTTHHHHCCHHHHHHHHTTSSSEEEEEEETTEEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred EecCCEEEEEEccCcccccCHHHHHHHHHhcCccEEecCCCccEEEEEecCcccHHHHHHHHHHHHHHHHHHhhc
Confidence 99999998888644 222 4555565654444444444455666655433 35666799999999888765443
No 88
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.70 E-value=1.3e-21 Score=186.39 Aligned_cols=111 Identities=16% Similarity=0.358 Sum_probs=105.2
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccccccCCCEEEEec
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 378 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiDip~v~~VI~~d 378 (643)
.+++++|||+++..++.+++.|+.. ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||++|
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~ 106 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA--GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFD 106 (170)
Confidence 4578999999999999999999987 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhccCCCCCceEEEEEecCCCC
Q 006476 379 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 412 (643)
Q Consensus 379 ~p~~s~~~~~Qr~GR~GR~g~~g~a~~l~~~~~~ 412 (643)
.|. +..+|.||+||+||.|+.|.|++++++.+.
T Consensus 107 ~p~-~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~ 139 (170)
T 2yjt_D 107 MPR-SGDTYLHRIGRTARAGRKGTAISLVEAHDH 139 (170)
Confidence 996 999999999999999999999999987643
No 89
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.81 E-value=4e-20 Score=181.61 Aligned_cols=153 Identities=20% Similarity=0.163 Sum_probs=107.0
Q ss_pred HhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC------CCeEEEEeccHHHHHH-H
Q 006476 83 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA------GKQAMVLAPTIVLAKQ-H 155 (643)
Q Consensus 83 ~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~------g~~vlil~Pt~~La~Q-~ 155 (643)
.....+.|+|+|.++++.+++ +.++++++|||+|||++++.++...+.. +.+++|++|+++|+.| +
T Consensus 27 ~~~~~~~l~~~Q~~~i~~~~~-------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~ 99 (216)
T 3b6e_A 27 SPEPELQLRPYQMEVAQPALE-------GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLF 99 (216)
T ss_dssp CCSCCCCCCHHHHHHHHHHHT-------TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHH
T ss_pred CccCCCCchHHHHHHHHHHhc-------CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHH
Confidence 344567999999999999875 4789999999999999999988876543 6799999999999999 6
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcc-----------cccCccceEEeecccc
Q 006476 156 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----------VVYNNLGLLVVDEEQR 224 (643)
Q Consensus 156 ~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~-----------~~~~~l~llViDEah~ 224 (643)
.+.+.+ +... ++++..++|+....... ..+.. .++|+|+||+.+.+. ..+.++++||+||||+
T Consensus 100 ~~~~~~-~~~~-~~~v~~~~g~~~~~~~~---~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~ 173 (216)
T 3b6e_A 100 RKEFQP-FLKK-WYRVIGLSGDTQLKISF---PEVVK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH 173 (216)
T ss_dssp HHTHHH-HHTT-TSCEEECCC---CCCCH---HHHHH-HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--
T ss_pred HHHHHH-Hhcc-CceEEEEeCCcccchhH---Hhhcc-CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchh
Confidence 677776 4433 57888888755432211 11122 379999999988532 4467899999999999
Q ss_pred cchh-HHH----HH-Hhc-------------CCCceEEEeccC
Q 006476 225 FGVK-QKE----KI-ASF-------------KISVDVLTLSAT 248 (643)
Q Consensus 225 ~g~~-~~~----~l-~~~-------------~~~~~vl~lSAT 248 (643)
+... ... .+ ... .++.++|+||||
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 174 TNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred hccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 7432 111 11 111 167899999998
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.80 E-value=6.8e-19 Score=176.39 Aligned_cols=159 Identities=18% Similarity=0.144 Sum_probs=119.1
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CC----CeEEEEeccHHHHH
Q 006476 79 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AG----KQAMVLAPTIVLAK 153 (643)
Q Consensus 79 ~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g----~~vlil~Pt~~La~ 153 (643)
.+-+.....+.++++|.++++.+.+ +.+++++|+||||||+++..+++.... .+ .++++++|+++|+.
T Consensus 51 ~~~~~~~~~~p~~~~q~~~i~~i~~-------g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~ 123 (235)
T 3llm_A 51 QAILQERELLPVKKFESEILEAISQ-------NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAV 123 (235)
T ss_dssp HHHHHHHHTSGGGGGHHHHHHHHHH-------CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhc-------CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHH
Confidence 3344455567889999999999975 589999999999999988877776543 33 38999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccc--ccCccceEEeecccccchh---
Q 006476 154 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV--VYNNLGLLVVDEEQRFGVK--- 228 (643)
Q Consensus 154 Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~--~~~~l~llViDEah~~g~~--- 228 (643)
|+++++...++...+..++.-.+.... ...+.++|+|+||++|.+.+ .++++++||+||||+++..
T Consensus 124 q~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~~~~~~~ 194 (235)
T 3llm_A 124 SVAERVAFERGEEPGKSCGYSVRFESI---------LPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDF 194 (235)
T ss_dssp HHHHHHHHTTTCCTTSSEEEEETTEEE---------CCCSSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSCCHHHHH
T ss_pred HHHHHHHHHhccccCceEEEeechhhc---------cCCCCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccCCcchHH
Confidence 999999887765545666654442211 11245899999999887643 4789999999999986432
Q ss_pred ---HHHHHHhcCCCceEEEeccCCChHh
Q 006476 229 ---QKEKIASFKISVDVLTLSATPIPRT 253 (643)
Q Consensus 229 ---~~~~l~~~~~~~~vl~lSATp~~~~ 253 (643)
....+....++.|++++|||++...
T Consensus 195 ~~~~l~~i~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 195 LLVVLRDVVQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHHHHHCTTSEEEEEECSSCCHH
T ss_pred HHHHHHHHHhhCCCCeEEEEecCCCHHH
Confidence 2233344457899999999997776
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.80 E-value=2.4e-19 Score=180.10 Aligned_cols=140 Identities=25% Similarity=0.179 Sum_probs=113.5
Q ss_pred cCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 85 ~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
.+.+.|+|+|.+|++.+++ +.++++++|||+|||.+++.++... +.+++|++|+++|+.|+++++.+ |
T Consensus 89 ~~~~~l~~~Q~~ai~~~~~-------~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~-~- 156 (237)
T 2fz4_A 89 DAEISLRDYQEKALERWLV-------DKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-F- 156 (237)
T ss_dssp CCCCCCCHHHHHHHHHHTT-------TSEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGG-G-
T ss_pred cCCCCcCHHHHHHHHHHHh-------CCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh-C-
Confidence 4567999999999998764 3569999999999999998877654 78999999999999999999876 4
Q ss_pred CCCCce-EEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccccc--CccceEEeecccccchhHHHHHHhcCCCce
Q 006476 165 KYPDIK-VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVY--NNLGLLVVDEEQRFGVKQKEKIASFKISVD 241 (643)
Q Consensus 165 ~~~~i~-v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~--~~l~llViDEah~~g~~~~~~l~~~~~~~~ 241 (643)
+++ +..++|+.. ...+|+|+|++.+...... .++++|||||+|++.......+....+..+
T Consensus 157 ---~~~~v~~~~g~~~-------------~~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~~~~ 220 (237)
T 2fz4_A 157 ---GEEYVGEFSGRIK-------------ELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPF 220 (237)
T ss_dssp ---CGGGEEEESSSCB-------------CCCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTTTHHHHHHTCCCSE
T ss_pred ---CCCeEEEEeCCCC-------------CcCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCChHHHHHHHhccCCE
Confidence 577 888888543 2478999999988654332 568999999999997766666666656889
Q ss_pred EEEeccCCChH
Q 006476 242 VLTLSATPIPR 252 (643)
Q Consensus 242 vl~lSATp~~~ 252 (643)
+|+|||||...
T Consensus 221 ~l~LSATp~r~ 231 (237)
T 2fz4_A 221 RLGLTATFERE 231 (237)
T ss_dssp EEEEEESCC--
T ss_pred EEEEecCCCCC
Confidence 99999999654
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.76 E-value=1.7e-16 Score=178.60 Aligned_cols=277 Identities=11% Similarity=0.090 Sum_probs=176.6
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCC
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 167 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 167 (643)
|+++|.|.+++..+.+.+.. ++++++.+|||+|||++|+.|++. .+.+++|++||++|+.|+.+++.. +....
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~---~~~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~-l~~~~ 74 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRN---NFLVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTK-IREKR 74 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHT---TCEEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTT-CCCSS
T ss_pred CCCCHHHHHHHHHHHHHHHc---CCcEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHH-Hhhhc
Confidence 68999999999988876643 689999999999999999999987 478999999999999999988875 55444
Q ss_pred CceEEEEeCCCChH------------------------------HHHHHHH------------------HHhcCCceEEE
Q 006476 168 DIKVGLLSRFQSKA------------------------------EKEEHLD------------------MIKHGHLNIIV 199 (643)
Q Consensus 168 ~i~v~~l~g~~~~~------------------------------~~~~~~~------------------~l~~g~~dIiI 199 (643)
++++..+.|..+.. .....+. ... ..+||||
T Consensus 75 ~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~-~~adIVV 153 (551)
T 3crv_A 75 NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL-YKADVIA 153 (551)
T ss_dssp CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG-GGCSEEE
T ss_pred CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh-hcCCEEE
Confidence 68888877632100 0011111 112 2479999
Q ss_pred echHhhhccc-----cc-CccceEEeecccccch-----------hH---------------------------------
Q 006476 200 GTHSLLGSRV-----VY-NNLGLLVVDEEQRFGV-----------KQ--------------------------------- 229 (643)
Q Consensus 200 ~T~~~L~~~~-----~~-~~l~llViDEah~~g~-----------~~--------------------------------- 229 (643)
+||..|.+.. .+ .+..++||||||++.. ..
T Consensus 154 ~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~ 233 (551)
T 3crv_A 154 LTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDKVNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEK 233 (551)
T ss_dssp EETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGGGGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSS
T ss_pred eCchHhcCHHHHHhcCCCcCCeEEEEecccchHHHHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999987642 11 3557899999996311 00
Q ss_pred -----------H-------H---H------------------H----H--------------hc--------------CC
Q 006476 230 -----------K-------E---K------------------I----A--------------SF--------------KI 238 (643)
Q Consensus 230 -----------~-------~---~------------------l----~--------------~~--------------~~ 238 (643)
. + . + . .+ ..
T Consensus 234 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~ 313 (551)
T 3crv_A 234 YIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLND 313 (551)
T ss_dssp CEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGC
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhc
Confidence 0 0 0 0 0 00 01
Q ss_pred C-ceEEEeccCCChHhHHHHHhcCC-Ccc----eeeCCCCCccceeEEEcc-----CC---H---HHHHHHHHHHHh-cC
Q 006476 239 S-VDVLTLSATPIPRTLYLALTGFR-DAS----LISTPPPERLPIKTHLSA-----FS---K---EKVISAIKYELD-RG 300 (643)
Q Consensus 239 ~-~~vl~lSATp~~~~~~~~~~~~~-~~~----~i~~~~~~~~~v~~~~~~-----~~---~---~~~~~~i~~~l~-~~ 300 (643)
. ..+|++|||..|-.......|+. +.. .+..+.+-......++.. +. . ..+.+.+.+.+. .+
T Consensus 314 ~~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~~ 393 (551)
T 3crv_A 314 NELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQAK 393 (551)
T ss_dssp TTCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHCS
T ss_pred cCceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhCC
Confidence 2 57889999998754444445554 221 111221111111112111 11 1 234444444333 46
Q ss_pred CeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEec--cccccccccc-----CCCE
Q 006476 301 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICT--NIVESGLDIQ-----NANT 373 (643)
Q Consensus 301 ~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT--~i~~~GiDip-----~v~~ 373 (643)
|.++||+++...++.+++. .+..+..-..+++ +.+.++.|+...-.||+|| ..+.+|||+| .++.
T Consensus 394 g~~lvlF~Sy~~l~~v~~~-----~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 394 ANVLVVFPSYEIMDRVMSR-----ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp SEEEEEESCHHHHHHHHTT-----CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred CCEEEEecCHHHHHHHHHh-----cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 8999999998888888762 2455544333455 3557777854445799998 6999999999 3788
Q ss_pred EEEecCC
Q 006476 374 IIVQDVQ 380 (643)
Q Consensus 374 VI~~d~p 380 (643)
||+.+.|
T Consensus 466 viI~~lP 472 (551)
T 3crv_A 466 VVIVGIP 472 (551)
T ss_dssp EEEESCC
T ss_pred EEEEcCC
Confidence 9987755
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.67 E-value=6.8e-15 Score=167.33 Aligned_cols=85 Identities=20% Similarity=0.153 Sum_probs=68.2
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CCCeEEEEeccHHHHHHHHHHHHHHhcCC
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFSKY 166 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g~~vlil~Pt~~La~Q~~~~~~~~~~~~ 166 (643)
|+|+|.|.+.+.++.+.+.+ +.++++++|||+|||++|+.|++..+. .+++++|++||++|+.|+.+++.. +...
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~---~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~-l~~~ 77 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQK---SYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRS-LSST 77 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHH---SSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHH-HHHH
T ss_pred CCCCHHHHHHHHHHHHHHHc---CCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHH-Hhhc
Confidence 68999999999988876643 689999999999999999999987754 478999999999999999999876 3332
Q ss_pred CCceEEEEeC
Q 006476 167 PDIKVGLLSR 176 (643)
Q Consensus 167 ~~i~v~~l~g 176 (643)
.++++..+.|
T Consensus 78 ~~~~~~~l~g 87 (620)
T 4a15_A 78 MKIRAIPMQG 87 (620)
T ss_dssp SCCCEEECCC
T ss_pred cCeEEEEEEC
Confidence 2467766655
No 94
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.60 E-value=1.2e-15 Score=156.12 Aligned_cols=121 Identities=16% Similarity=0.218 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcC-Cce-EEEecccccccc
Q 006476 289 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIK-ILICTNIVESGL 366 (643)
Q Consensus 289 ~~~~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g-~~~-ILVaT~i~~~Gi 366 (643)
+.+.+......+.+++||++....++.+...|.... ++.+..+||+++..+|++++++|+++ ..+ +|+||+++++|+
T Consensus 101 L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~-g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Gl 179 (271)
T 1z5z_A 101 TMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGI 179 (271)
T ss_dssp HHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH-CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCC
T ss_pred HHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhc-CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCc
Confidence 445555555678999999999999999999998732 67889999999999999999999998 677 789999999999
Q ss_pred cccCCCEEEEecCCCCCHHHHHHHHhccCCCCCceE--EEEEecCCC
Q 006476 367 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAH--AYLFYPDKS 411 (643)
Q Consensus 367 Dip~v~~VI~~d~p~~s~~~~~Qr~GR~GR~g~~g~--a~~l~~~~~ 411 (643)
|++++++||++|+|+ ++..+.|++||++|.|+.+. +|.+++...
T Consensus 180 nl~~a~~VI~~d~~w-np~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 180 NLTSANRVIHFDRWW-NPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp CCTTCSEEEECSCCS-CTTTC--------------CCEEEEEEETTS
T ss_pred CcccCCEEEEECCCC-ChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 999999999999995 99999999999999987654 577887764
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.50 E-value=4e-07 Score=103.26 Aligned_cols=151 Identities=20% Similarity=0.155 Sum_probs=87.8
Q ss_pred hHHHHHhcCCC-CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHH--HHHHHHHHH--HCCCeEEEEeccHHHH
Q 006476 78 AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV--ALRAIFCVV--SAGKQAMVLAPTIVLA 152 (643)
Q Consensus 78 ~~~~~~~~~~~-~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~--~l~~i~~~~--~~g~~vlil~Pt~~La 152 (643)
+...+...|+. ..++.|.+|++.++. +..+++.|++|+|||.+ ++.+.+... ..+.++++++||..+|
T Consensus 137 ~~~~l~~~~~~~~~~~~Q~~Ai~~~l~-------~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA 209 (608)
T 1w36_D 137 LAQTLDKLFPVSDEINWQKVAAAVALT-------RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAA 209 (608)
T ss_dssp HHHHHHTTCCCTTSCCHHHHHHHHHHT-------BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHhc-------CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHH
Confidence 44556655542 347999999998864 47899999999999954 566666543 3466999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEE-echHh--hh-cccccCccceEEeecccccchh
Q 006476 153 KQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV-GTHSL--LG-SRVVYNNLGLLVVDEEQRFGVK 228 (643)
Q Consensus 153 ~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI-~T~~~--L~-~~~~~~~l~llViDEah~~g~~ 228 (643)
.++.+.+....... ++......+..... ..++-++ .+|+. +. ......++++||||||+.+...
T Consensus 210 ~~L~e~~~~~~~~l-~l~~~~~~~~~~~~-----------~Tih~ll~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~ 277 (608)
T 1w36_D 210 ARLTESLGKALRQL-PLTDEQKKRIPEDA-----------STLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLP 277 (608)
T ss_dssp HHHHHHHTHHHHHS-SCCSCCCCSCSCCC-----------BTTTSCC-----------CTTSCCSCSEEEECSGGGCBHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHhccchhh-----------hhhHhhhccCCCchHHHhccCCCCCCCEEEEechhhCCHH
Confidence 99888776432222 11100000000000 0000011 11110 10 0111236789999999987765
Q ss_pred HH-HHHHhcCCCceEEEecc
Q 006476 229 QK-EKIASFKISVDVLTLSA 247 (643)
Q Consensus 229 ~~-~~l~~~~~~~~vl~lSA 247 (643)
.. ..+..++.+.+++++-=
T Consensus 278 ~~~~Ll~~l~~~~~liLvGD 297 (608)
T 1w36_D 278 MMSRLIDALPDHARVIFLGD 297 (608)
T ss_dssp HHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHhCCCCCEEEEEcc
Confidence 43 34556667778777543
No 96
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.1e-05 Score=93.89 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CCCeEEEEeccHHHHHHHHHHHHH
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
..+++.|.+|+..++. ..-.+|.||.|+|||.+....+...+. .+.++++++||...+.++.+++.+
T Consensus 359 ~~Ln~~Q~~Av~~~l~-------~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCCHHHHHHHHHHTT-------CSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhc-------CCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 4789999999988753 245799999999999987655554443 578999999999999999998876
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.25 E-value=9.4e-06 Score=92.76 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
..+++.|.+|+..++. . ..-.||+||.|||||.+....+...+..+.++|+++||...+.++.+++..
T Consensus 188 ~~LN~~Q~~AV~~al~---~---~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALS---Q---KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHHHHH---C---SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc---C---CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 4789999999988875 1 224799999999999998888888888999999999999999999988865
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.23 E-value=9.9e-06 Score=88.65 Aligned_cols=142 Identities=18% Similarity=0.136 Sum_probs=83.4
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCC-eEEEEeccHHHHHHHH
Q 006476 78 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK-QAMVLAPTIVLAKQHF 156 (643)
Q Consensus 78 ~~~~~~~~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~-~vlil~Pt~~La~Q~~ 156 (643)
|.....-..+-.+++.|.+|+..++..+.. . ...+++.|+.|||||.+....+......+. .+++++||...|..+.
T Consensus 14 ~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~-~-~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 14 LVPRGSHMTFDDLTEGQKNAFNIVMKAIKE-K-KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILS 91 (459)
T ss_dssp -------CCSSCCCHHHHHHHHHHHHHHHS-S-SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHH
T ss_pred CccccCCCccccCCHHHHHHHHHHHHHHhc-C-CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHH
Confidence 444444444558999999999998876643 2 238999999999999887555444455565 7999999998887655
Q ss_pred HHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHh---cCCceEEEechHhhhcccccCccceEEeecccccchhHHHHH
Q 006476 157 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK---HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKI 233 (643)
Q Consensus 157 ~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~---~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l 233 (643)
+.+ +..+..+++. +. +. .+....... .....+..+++|||||+|.+...+...+
T Consensus 92 ~~~--------~~~~~T~h~~---------~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~iiiDE~~~~~~~~~~~l 148 (459)
T 3upu_A 92 KLS--------GKEASTIHSI---------LK-INPVTYEENVLFEQ-----KEVPDLAKCRVLICDEVSMYDRKLFKIL 148 (459)
T ss_dssp HHH--------SSCEEEHHHH---------HT-EEEEECSSCEEEEE-----CSCCCCSSCSEEEESCGGGCCHHHHHHH
T ss_pred hhh--------ccchhhHHHH---------hc-cCcccccccchhcc-----cccccccCCCEEEEECchhCCHHHHHHH
Confidence 443 2233333220 10 00 000000000 1122356789999999999887666655
Q ss_pred Hhc-CCCceEEE
Q 006476 234 ASF-KISVDVLT 244 (643)
Q Consensus 234 ~~~-~~~~~vl~ 244 (643)
... ....++++
T Consensus 149 ~~~~~~~~~~~~ 160 (459)
T 3upu_A 149 LSTIPPWCTIIG 160 (459)
T ss_dssp HHHSCTTCEEEE
T ss_pred HHhccCCCEEEE
Confidence 544 33444443
No 99
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.21 E-value=1.8e-05 Score=89.91 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CCCeEEEEeccHHHHHHHHHHHHH
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
..+++.|.+|+..++. ..-.+|.||+|+|||.+....+..... .+.++++++||...+.++.+++.+
T Consensus 179 ~~ln~~Q~~av~~~l~-------~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCCHHHHHHHHHHHT-------CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhc-------CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 4789999999988764 246799999999999987665555554 578999999999999999888764
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.18 E-value=1.8e-05 Score=88.87 Aligned_cols=124 Identities=18% Similarity=0.127 Sum_probs=79.7
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCC
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 166 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~ 166 (643)
++.+++.|.+|+..+.. ...+++.|+.|+|||.+....+......+.++++++||...+..+.+..
T Consensus 187 ~~~L~~~Q~~Av~~~~~-------~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~------- 252 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG-------HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT------- 252 (574)
T ss_dssp TTTCCHHHHHHHHHHTT-------CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH-------
T ss_pred cCCCCHHHHHHHHHHHh-------CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh-------
Confidence 77999999999988753 4678999999999998865444444567899999999999888765432
Q ss_pred CCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHH-hcCCCceEEE
Q 006476 167 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIA-SFKISVDVLT 244 (643)
Q Consensus 167 ~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~-~~~~~~~vl~ 244 (643)
+.....+++.... . . + ..........++++|||||++.+.......+. .++.+.++++
T Consensus 253 -~~~a~Tih~ll~~------------~-~-----~-~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lil 311 (574)
T 3e1s_A 253 -GRTASTVHRLLGY------------G-P-----Q-GFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLL 311 (574)
T ss_dssp -TSCEEEHHHHTTE------------E-T-----T-EESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEE
T ss_pred -cccHHHHHHHHcC------------C-c-----c-hhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhCcCCCEEEE
Confidence 2222222221000 0 0 0 00001112346789999999999876655544 3444555554
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.08 E-value=4.4e-05 Score=88.93 Aligned_cols=68 Identities=21% Similarity=0.201 Sum_probs=55.0
Q ss_pred CCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CCCeEEEEeccHHHHHHHHHHHHH
Q 006476 87 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 87 ~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
...+++.|.+|+..++. ..-.+|.||+|+|||.+....+..... .+.++++++||...+.++.+.+.+
T Consensus 354 ~~~Ln~~Q~~Av~~~l~-------~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHHHHT-------SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhcc-------CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 34789999999988764 245799999999999987655554444 578999999999999998888764
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.08 E-value=6.6e-05 Score=85.52 Aligned_cols=80 Identities=19% Similarity=0.153 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC----CeEEEEeccHHHHHHHHHHHHHHh
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG----KQAMVLAPTIVLAKQHFDVVSERF 163 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g----~~vlil~Pt~~La~Q~~~~~~~~~ 163 (643)
-.+++.|.+|+... ...++|.|+.|||||.+.+.-+...+..+ .+++++++|+..+.++.+++.+.+
T Consensus 8 ~~Ln~~Q~~av~~~---------~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAAP---------RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTCC---------SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhCC---------CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 37999999997421 35689999999999999877776666553 589999999999999999998866
Q ss_pred cCC-CCceEEEEeC
Q 006476 164 SKY-PDIKVGLLSR 176 (643)
Q Consensus 164 ~~~-~~i~v~~l~g 176 (643)
+.. .++.+..+++
T Consensus 79 ~~~~~~~~v~Tfhs 92 (647)
T 3lfu_A 79 GTSQGGMWVGTFHG 92 (647)
T ss_dssp CSCCTTCEEEEHHH
T ss_pred ccccCCcEEEcHHH
Confidence 532 3456666554
No 103
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.54 E-value=0.00031 Score=68.22 Aligned_cols=108 Identities=20% Similarity=0.251 Sum_probs=61.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l 190 (643)
++=.+++|+.|+|||+.++..+.+....|.+++++.|...- ..-...+.+++ ++.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~-R~ge~~i~s~~----g~~~~------------------ 84 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDN-RYSEEDVVSHN----GLKVK------------------ 84 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC----------------------CC------------------
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCC-cchHHHHHhhc----CCeeE------------------
Confidence 44556899999999999999999999999999999997531 00000111111 11111
Q ss_pred hcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHhc-CCCceEEEeccC
Q 006476 191 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF-KISVDVLTLSAT 248 (643)
Q Consensus 191 ~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~-~~~~~vl~lSAT 248 (643)
.+.+....-+.+.+. .++++|+|||+|-|...+.+.+..+ ..+..++ +++-
T Consensus 85 -----a~~~~~~~~~~~~~~-~~~dvViIDEaQF~~~~~V~~l~~l~~~~~~Vi-~~Gl 136 (214)
T 2j9r_A 85 -----AVPVSASKDIFKHIT-EEMDVIAIDEVQFFDGDIVEVVQVLANRGYRVI-VAGL 136 (214)
T ss_dssp -----EEECSSGGGGGGGCC-SSCCEEEECCGGGSCTTHHHHHHHHHHTTCEEE-EEEC
T ss_pred -----EeecCCHHHHHHHHh-cCCCEEEEECcccCCHHHHHHHHHHhhCCCEEE-EEec
Confidence 111112222222111 3589999999999876666666654 2355544 4444
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.51 E-value=0.00035 Score=66.43 Aligned_cols=104 Identities=19% Similarity=0.165 Sum_probs=60.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 190 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l 190 (643)
++-.++.|+.|+|||+.++..+......|.+++++.|... .+++. ..+....+ +
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d----------~r~~~---~~i~s~~g-------------~ 56 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKID----------SRYHS---TMIVSHSG-------------N 56 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC---------------CC---CEECC-----------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccc----------cccCc---ccEEecCC-------------C
Confidence 3557899999999999998888888788999999999832 11211 11110000 0
Q ss_pred hcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHhc-CCCceEE
Q 006476 191 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF-KISVDVL 243 (643)
Q Consensus 191 ~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~-~~~~~vl 243 (643)
....+.+..+..+.+.+. .+.++|+|||+|.+...+.+.+..+ ..+..++
T Consensus 57 --~~~~~~~~~~~~~~~~~~-~~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi 107 (184)
T 2orw_A 57 --GVEAHVIERPEEMRKYIE-EDTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVF 107 (184)
T ss_dssp --CEECEEESSGGGGGGGCC-TTEEEEEECCGGGSCTTHHHHHHHHHHTTCEEE
T ss_pred --ceeeEEECCHHHHHHHhc-CCCCEEEEECcccCCHHHHHHHHHHHHCCCCEE
Confidence 001122333343433322 4678999999999855455555433 2355554
No 105
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.46 E-value=0.00037 Score=66.73 Aligned_cols=39 Identities=28% Similarity=0.295 Sum_probs=34.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~ 149 (643)
++=.++.|++|+|||+.++..+.+....|.+|+++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 556788999999999999999888888999999999984
No 106
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.06 E-value=0.00041 Score=68.07 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=35.0
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~ 149 (643)
++.-.++.|++|+|||+.++..+......|.+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 3566788999999999999999888888899999998865
No 107
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.04 E-value=0.0022 Score=62.18 Aligned_cols=105 Identities=19% Similarity=0.163 Sum_probs=61.6
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 189 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~ 189 (643)
.+.=.+++|+.|+|||+..+..+.+....+.+++++.|...--. -...+.++. |+..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~-~~~~I~Sr~----G~~~------------------ 83 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRY-HKEKVVSHN----GNAI------------------ 83 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC------------CBT----TBCC------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcc-hhhhHHHhc----CCce------------------
Confidence 35667899999999999888888888888999999999753100 000111111 1111
Q ss_pred HhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHhcC-CCceEE
Q 006476 190 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFK-ISVDVL 243 (643)
Q Consensus 190 l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~~-~~~~vl 243 (643)
.-+.+..+.-+.+.+ ..++++|+|||||-|...+.+.+..+. .+.+|+
T Consensus 84 -----~a~~v~~~~di~~~i-~~~~dvV~IDEaQFf~~~~v~~l~~la~~gi~Vi 132 (219)
T 3e2i_A 84 -----EAINISKASEIMTHD-LTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVI 132 (219)
T ss_dssp -----EEEEESSGGGGGGSC-CTTCSEEEECCGGGSCTHHHHHHHHHHHTTCEEE
T ss_pred -----eeEEeCCHHHHHHHH-hcCCCEEEEechhcCCHHHHHHHHHHHHCCCEEE
Confidence 123333333333322 257889999999999765555544432 344444
No 108
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.00 E-value=0.0035 Score=65.23 Aligned_cols=46 Identities=13% Similarity=0.037 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHH
Q 006476 90 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 135 (643)
Q Consensus 90 ~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~ 135 (643)
+.|+|.+++..+.+.+..+.-+.-.++.||.|+|||..+...+-..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 4699999998888766444434568999999999998876544433
No 109
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.93 E-value=0.012 Score=62.44 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=56.7
Q ss_pred CCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH-HHH-CCCeEEEEeccHHHHHHHHHHHHHHh
Q 006476 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC-VVS-AGKQAMVLAPTIVLAKQHFDVVSERF 163 (643)
Q Consensus 86 ~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~-~~~-~g~~vlil~Pt~~La~Q~~~~~~~~~ 163 (643)
.++.++|+|...+..+.. .+-+++..+-+.|||.++...++. .+. .+..+++++||..-|..+++.++..+
T Consensus 160 ~p~~L~p~Qk~il~~l~~-------~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSS-------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp EECCCCHHHHHHHHHHHH-------SSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhhcc-------CcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 357999999998876631 245899999999999986544443 333 46689999999999999888887766
Q ss_pred cCCC
Q 006476 164 SKYP 167 (643)
Q Consensus 164 ~~~~ 167 (643)
...|
T Consensus 233 ~~~P 236 (385)
T 2o0j_A 233 ELLP 236 (385)
T ss_dssp HHSC
T ss_pred HhCh
Confidence 5444
No 110
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.85 E-value=0.002 Score=61.59 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=34.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEecc
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt 148 (643)
++=.++.|++|||||+-.+..+......+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 45678899999999999999998888889999999987
No 111
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.68 E-value=0.026 Score=63.49 Aligned_cols=123 Identities=13% Similarity=0.140 Sum_probs=77.2
Q ss_pred CCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHH-HHHHHC-CCeEEEEeccHHHHHHHHHHHHHHh
Q 006476 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI-FCVVSA-GKQAMVLAPTIVLAKQHFDVVSERF 163 (643)
Q Consensus 86 ~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i-~~~~~~-g~~vlil~Pt~~La~Q~~~~~~~~~ 163 (643)
.++.|+|+|...+..+-. .+..++.++-|+|||.+....+ ...+.. +..++++.|+...|..+++.++..+
T Consensus 160 ~~~~l~p~Q~~i~~~l~~-------~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMSS-------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp BBCCCCHHHHHHHHHHHH-------CSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHhhcc-------ccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 467999999998876621 3568999999999999864333 333333 4589999999999999999888777
Q ss_pred cCCCC-ceEEEEeCCCChHHHHHHHHHHhcCCceEEEe--chHhhhcccccCccceEEeecccccch
Q 006476 164 SKYPD-IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG--THSLLGSRVVYNNLGLLVVDEEQRFGV 227 (643)
Q Consensus 164 ~~~~~-i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~--T~~~L~~~~~~~~l~llViDEah~~g~ 227 (643)
...|. ++.......... + .+.+| ..|.+. .|..+.. .+.+++|+||+|.+..
T Consensus 233 ~~~p~~~~~~~~~~~~~~------i-~~~nG-s~i~~~s~~~~~lrG----~~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 233 ELLPDFLQPGIVEWNKGS------I-ELDNG-SSIGAYASSPDAVRG----NSFAMIYIEDCAFIPN 287 (592)
T ss_dssp TTSCTTTSCCEEEECSSE------E-EETTS-CEEEEEECCHHHHHH----SCCSEEEEETGGGCTT
T ss_pred HhChHhhccccccCCccE------E-EecCC-CEEEEEeCCCCCccC----CCcceEEEehhccCCc
Confidence 66652 111111000000 0 01223 233322 2444432 2467899999998744
No 112
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.65 E-value=0.017 Score=53.96 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=39.9
Q ss_pred CHHHHHHHHHhHHhhc--cCCCCCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEeccHHHHHHHH
Q 006476 91 TPDQKKAFLDVERDLT--ERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHF 156 (643)
Q Consensus 91 tp~Q~~ai~~i~~~~~--~~~~~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~Pt~~La~Q~~ 156 (643)
++.|.+++..+.+-.. ....+..+++.||+|+|||..+-..+-... ..|..++++ +..++..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~ 83 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF-DTKDLIFRLK 83 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE-EHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHH
Confidence 6789988887654221 113367899999999999987644433333 446555553 3344444433
No 113
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.58 E-value=0.0025 Score=72.87 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC----CCeEEEEeccHHHHHHHHHHHHHHhc
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSERFS 164 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~----g~~vlil~Pt~~La~Q~~~~~~~~~~ 164 (643)
.++|.|.+|+... ...++|.|..|||||.+...-+...+.. ..++++++.|+..|.++.+++.+.++
T Consensus 2 ~L~~~Q~~av~~~---------~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV---------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC---------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC---------CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 5899999997532 3678999999999999987655555433 35899999999999999999988765
Q ss_pred CC--CCceEEEEeCC
Q 006476 165 KY--PDIKVGLLSRF 177 (643)
Q Consensus 165 ~~--~~i~v~~l~g~ 177 (643)
.. .++.|..++++
T Consensus 73 ~~~~~~~~v~Tfhs~ 87 (673)
T 1uaa_A 73 RKEARGLMISTFHTL 87 (673)
T ss_dssp TTTTTTSEEEEHHHH
T ss_pred cccccCCEEEeHHHH
Confidence 42 24677766653
No 114
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=96.57 E-value=0.019 Score=52.92 Aligned_cols=92 Identities=12% Similarity=0.185 Sum_probs=73.0
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEec
Q 006476 122 FGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201 (643)
Q Consensus 122 sGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T 201 (643)
..|... +.-++.. ..+.+++|.++++.-+..+++.+.+. ++.+..++|..+..++...++.+.+|+.+|+|+|
T Consensus 20 ~~K~~~-L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T 92 (163)
T 2hjv_A 20 ENKFSL-LKDVLMT-ENPDSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT 92 (163)
T ss_dssp GGHHHH-HHHHHHH-HCCSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred HHHHHH-HHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 456543 3333333 35678999999999999999888763 6889999999999999999999999999999999
Q ss_pred hHhhhcccccCccceEEeec
Q 006476 202 HSLLGSRVVYNNLGLLVVDE 221 (643)
Q Consensus 202 ~~~L~~~~~~~~l~llViDE 221 (643)
..+...+++.++++||.-.
T Consensus 93 -~~~~~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 93 -DVAARGIDIENISLVINYD 111 (163)
T ss_dssp -GGGTTTCCCSCCSEEEESS
T ss_pred -ChhhcCCchhcCCEEEEeC
Confidence 5566667788888877643
No 115
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.51 E-value=0.008 Score=58.85 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=35.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~ 149 (643)
++=.+++|+.|+|||+.++..+.+....|.+++++.|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC
Confidence 455688999999999999999999999999999999975
No 116
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=96.49 E-value=0.019 Score=52.87 Aligned_cols=90 Identities=16% Similarity=0.230 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechH
Q 006476 124 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 203 (643)
Q Consensus 124 KT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~ 203 (643)
|... +..++.. ..+.+++|.++++.-+..+++.+.+. ++.+..++|..+..++...++...+|+.+|+|+| .
T Consensus 17 K~~~-l~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~ 88 (165)
T 1fuk_A 17 KYEC-LTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-D 88 (165)
T ss_dssp HHHH-HHHHHHH-TTCSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-G
T ss_pred HHHH-HHHHHHh-CCCCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-C
Confidence 6543 3344443 25678999999999999998888763 6889999999999999999999999999999999 4
Q ss_pred hhhcccccCccceEEeec
Q 006476 204 LLGSRVVYNNLGLLVVDE 221 (643)
Q Consensus 204 ~L~~~~~~~~l~llViDE 221 (643)
.+...+++.++++||.-+
T Consensus 89 ~~~~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 89 LLARGIDVQQVSLVINYD 106 (165)
T ss_dssp GGTTTCCCCSCSEEEESS
T ss_pred hhhcCCCcccCCEEEEeC
Confidence 555567777888877643
No 117
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.013 Score=60.46 Aligned_cols=39 Identities=8% Similarity=-0.163 Sum_probs=26.0
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHH
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
.|.+.+...+........+.++++.||+|+|||.++-..
T Consensus 27 ~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v 65 (318)
T 3te6_A 27 EDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDV 65 (318)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHH
Confidence 344444433333324567889999999999999876443
No 118
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.41 E-value=0.0047 Score=66.41 Aligned_cols=102 Identities=16% Similarity=0.038 Sum_probs=59.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHh
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 191 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~ 191 (643)
.-.++.|+.|+|||......+ .....+|++||++++..+.+.+.+. +...
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~-----~~~~~lVlTpT~~aa~~l~~kl~~~-~~~~------------------------ 211 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRV-----NFEEDLILVPGRQAAEMIRRRANAS-GIIV------------------------ 211 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHC-----CTTTCEEEESCHHHHHHHHHHHTTT-SCCC------------------------
T ss_pred cEEEEEcCCCCCHHHHHHHHh-----ccCCeEEEeCCHHHHHHHHHHhhhc-Cccc------------------------
Confidence 345789999999997764332 2357899999999998877766421 1100
Q ss_pred cCCceEEEechHh-hhccccc--CccceEEeecccccchhHHHHHHhcCCCceEEEe
Q 006476 192 HGHLNIIVGTHSL-LGSRVVY--NNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTL 245 (643)
Q Consensus 192 ~g~~dIiI~T~~~-L~~~~~~--~~l~llViDEah~~g~~~~~~l~~~~~~~~vl~l 245 (643)
. ...-+.|-+. |.+.... ...++|||||+..+.......+....+..+++++
T Consensus 212 -~-~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~~~~vilv 266 (446)
T 3vkw_A 212 -A-TKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVY 266 (446)
T ss_dssp -C-CTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSCHHHHHHHHHHTTCSEEEEE
T ss_pred -c-ccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCCHHHHHHHHHhCCCCEEEEe
Confidence 0 0111334332 2222222 2478999999998765554444333333444443
No 119
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.36 E-value=0.0096 Score=69.00 Aligned_cols=94 Identities=18% Similarity=0.346 Sum_probs=78.5
Q ss_pred HHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cccccccc
Q 006476 292 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-IVESGLDI 368 (643)
Q Consensus 292 ~i~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p--~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~-i~~~GiDi 368 (643)
.+...+..+.+++|.+|++.-++..++.++..++ ++++..+||+++..++...++.+.+|+.+|+|+|. .+...+++
T Consensus 409 ~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~ 488 (780)
T 1gm5_A 409 AILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHF 488 (780)
T ss_dssp HHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCC
T ss_pred HHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhc
Confidence 3444556789999999999988888888887764 68999999999999999999999999999999997 44566889
Q ss_pred cCCCEEEEecCCCCCHH
Q 006476 369 QNANTIIVQDVQQFGLA 385 (643)
Q Consensus 369 p~v~~VI~~d~p~~s~~ 385 (643)
.++..||+..+..|+..
T Consensus 489 ~~l~lVVIDEaHr~g~~ 505 (780)
T 1gm5_A 489 KNLGLVIIDEQHRFGVK 505 (780)
T ss_dssp SCCCEEEEESCCCC---
T ss_pred cCCceEEecccchhhHH
Confidence 99999999888887644
No 120
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=96.28 E-value=0.011 Score=55.97 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=61.4
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEe
Q 006476 121 GFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 200 (643)
Q Consensus 121 GsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~ 200 (643)
.+.|... +.-++.....+.+++|.++++.-+..+++.+... ++.+..++|..+..++...++.+.+|+.+|+|+
T Consensus 29 ~~~K~~~-L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLva 102 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVA 102 (185)
T ss_dssp GGGHHHH-HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEE
T ss_pred cHHHHHH-HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 4567543 4444444445778999999999999998888763 688999999998888888999999999999999
Q ss_pred chHhhhcccccCccceEEe
Q 006476 201 THSLLGSRVVYNNLGLLVV 219 (643)
Q Consensus 201 T~~~L~~~~~~~~l~llVi 219 (643)
| ..+...+++.++++||.
T Consensus 103 T-~~~~~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 103 T-AVAARGLDISNVKHVIN 120 (185)
T ss_dssp E-C------CCCSBSEEEE
T ss_pred c-ChhhcCCCcccCCEEEE
Confidence 9 45555667778887775
No 121
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.27 E-value=0.0074 Score=69.64 Aligned_cols=80 Identities=18% Similarity=0.143 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC-C---CeEEEEeccHHHHHHHHHHHHHHh
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-G---KQAMVLAPTIVLAKQHFDVVSERF 163 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-g---~~vlil~Pt~~La~Q~~~~~~~~~ 163 (643)
-.++|.|.+|+... ...++|.|..|||||.+...-+...+.. + .++++++.|+..|.++.+++.+.+
T Consensus 10 ~~Ln~~Q~~av~~~---------~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT---------EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHCC---------SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhCC---------CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 47999999997532 3578999999999999987666666653 2 589999999999999999998766
Q ss_pred cCC-CCceEEEEeC
Q 006476 164 SKY-PDIKVGLLSR 176 (643)
Q Consensus 164 ~~~-~~i~v~~l~g 176 (643)
+.. .++.|..+++
T Consensus 81 ~~~~~~~~v~Tfhs 94 (724)
T 1pjr_A 81 GGAAEDVWISTFHS 94 (724)
T ss_dssp GGGGTTSEEEEHHH
T ss_pred cccccCcEEeeHHH
Confidence 532 2466766655
No 122
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.26 E-value=0.045 Score=56.23 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=26.0
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
.+..+++.||+|+|||..+-..+-.....+..++++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 35689999999999998764443333344566666643
No 123
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.25 E-value=0.063 Score=56.16 Aligned_cols=55 Identities=11% Similarity=0.084 Sum_probs=31.3
Q ss_pred CHHHHHHHHHhHHhhccCCCCC--cEEEEccCCCchHHHHHHHHHHHHHC--CCeEEEEe
Q 006476 91 TPDQKKAFLDVERDLTERETPM--DRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLA 146 (643)
Q Consensus 91 tp~Q~~ai~~i~~~~~~~~~~~--d~li~a~TGsGKT~~~l~~i~~~~~~--g~~vlil~ 146 (643)
+..+.+.+...+.....+..+. .+++.||+|+|||..+-. +...+.. +..++.+.
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~-l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRK-LWELYKDKTTARFVYIN 80 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHH-HHHHHTTSCCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHH-HHHHHhhhcCeeEEEEe
Confidence 3444444444443322233445 799999999999987643 3333333 34555554
No 124
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=96.23 E-value=0.02 Score=53.27 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=72.7
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEec
Q 006476 122 FGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201 (643)
Q Consensus 122 sGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T 201 (643)
..|... +..++.. ..+.+++|.++++.-+..+++.+... ++.+..++|..+..++...++.+.+|+.+|+|+|
T Consensus 16 ~~K~~~-L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT 88 (172)
T 1t5i_A 16 NEKNRK-LFDLLDV-LEFNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 88 (172)
T ss_dssp GGHHHH-HHHHHHH-SCCSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES
T ss_pred HHHHHH-HHHHHHh-CCCCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC
Confidence 456543 3333433 24678999999999999999888763 6889999999999999999999999999999999
Q ss_pred hHhhhcccccCccceEEeecc
Q 006476 202 HSLLGSRVVYNNLGLLVVDEE 222 (643)
Q Consensus 202 ~~~L~~~~~~~~l~llViDEa 222 (643)
..+...+++.++++||.-+.
T Consensus 89 -~~~~~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 89 -NLFGRGMDIERVNIAFNYDM 108 (172)
T ss_dssp -SCCSTTCCGGGCSEEEESSC
T ss_pred -CchhcCcchhhCCEEEEECC
Confidence 45555677778888776443
No 125
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=96.18 E-value=0.014 Score=54.41 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=64.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.++++.-+..++..+.+. ++.+..++|..+..++...++.+++|+.+|+|+| ..+...+++.++++|
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT-~~~~~Gid~~~~~~V 106 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-NVCARGIDVKQVTIV 106 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-CSCCTTTCCTTEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-cchhcCCCcccCCEE
Confidence 4578999999999999988887653 6889999999999999999999999999999999 445556777888888
Q ss_pred Ee
Q 006476 218 VV 219 (643)
Q Consensus 218 Vi 219 (643)
|.
T Consensus 107 i~ 108 (175)
T 2rb4_A 107 VN 108 (175)
T ss_dssp EE
T ss_pred EE
Confidence 84
No 126
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.16 E-value=0.015 Score=59.86 Aligned_cols=116 Identities=11% Similarity=0.002 Sum_probs=79.6
Q ss_pred HHHHHHHHH-hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccccccc
Q 006476 289 VISAIKYEL-DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 367 (643)
Q Consensus 289 ~~~~i~~~l-~~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~~GiD 367 (643)
+++.+...+ ..+.++++|++..+..+-+.+++... +++...+.|.....++ +. .+....+.+.|+...-|+|
T Consensus 113 ~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~--~~~y~RlDG~~~~~~~-k~----~~~~~~i~Lltsag~~gin 185 (328)
T 3hgt_A 113 VLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGN--KVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSSEGINFTK 185 (328)
T ss_dssp HHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTS--SCEEEESSSCCC------------CCSEEEEEEESSCCCTTT
T ss_pred HHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcC--CCceEeCCCCchhhhh-hc----ccCCceEEEEECCCCCCcC
Confidence 333333333 46789999999999999999999876 8999999998554322 11 2455566666776666776
Q ss_pred -----ccCCCEEEEecCCCCCHHH-HHHHHhccCCCC----CceEEEEEecCCCC
Q 006476 368 -----IQNANTIIVQDVQQFGLAQ-LYQLRGRVGRAD----KEAHAYLFYPDKSL 412 (643)
Q Consensus 368 -----ip~v~~VI~~d~p~~s~~~-~~Qr~GR~GR~g----~~g~a~~l~~~~~~ 412 (643)
...+++||.+|.+. ++.. .+|.+-|+.|.+ +.-.+|.+++...+
T Consensus 186 ~~~~nl~~aD~VI~~Dsdw-Np~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 186 YPIKSKARFDMLICLDTTV-DTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp SCCCCCSCCSEEEECSTTC-CTTSHHHHHHHCCC---------CCEEEEEETTSH
T ss_pred cccccCCCCCEEEEECCCC-CCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 67899999999985 7765 488888888863 45678999988753
No 127
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.14 E-value=0.021 Score=52.86 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=24.1
Q ss_pred HHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHH
Q 006476 95 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 95 ~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i 132 (643)
...+..+.+.+. ...+..+++.||+|+|||..+-..+
T Consensus 28 ~~~~~~l~~~l~-~~~~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 28 DTEIRRAIQILS-RRTKNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp HHHHHHHHHHHT-SSSSCEEEEESCGGGCHHHHHHHHH
T ss_pred hHHHHHHHHHHh-CCCCCceEEECCCCCCHHHHHHHHH
Confidence 334444444332 3446789999999999998764443
No 128
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=96.14 E-value=0.023 Score=53.98 Aligned_cols=75 Identities=7% Similarity=0.188 Sum_probs=65.3
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEE
Q 006476 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218 (643)
Q Consensus 139 g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llV 218 (643)
+.+++|.++++.-+..+++.+... ++.+..++|..+..++...++.+++|+.+|+|+| ..+...+++.++++||
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-~~~~~Gldi~~v~~VI 127 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-DVASKGLDFPAIQHVI 127 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-HHHHTTCCCCCCSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-CchhcCCCcccCCEEE
Confidence 568999999999999999988764 6889999999999999999999999999999999 5555567778888777
Q ss_pred e
Q 006476 219 V 219 (643)
Q Consensus 219 i 219 (643)
.
T Consensus 128 ~ 128 (191)
T 2p6n_A 128 N 128 (191)
T ss_dssp E
T ss_pred E
Confidence 6
No 129
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.09 E-value=0.031 Score=58.54 Aligned_cols=41 Identities=24% Similarity=0.181 Sum_probs=27.2
Q ss_pred CHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHH
Q 006476 91 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 91 tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
+..+.+.+...+..+..+..+..+++.||+|+|||..+-..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l 65 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYI 65 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHH
Confidence 45555555544443333455678999999999999886443
No 130
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=96.07 E-value=0.037 Score=53.40 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=73.1
Q ss_pred CCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEE
Q 006476 120 VGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 199 (643)
Q Consensus 120 TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI 199 (643)
.-..|..+... ++. ...+.+++|.+|++.-+..+++.+.+. ++.+..++|..+..++...++..++|..+|+|
T Consensus 14 ~~~~k~~~l~~-ll~-~~~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlv 86 (212)
T 3eaq_A 14 PVRGRLEVLSD-LLY-VASPDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLV 86 (212)
T ss_dssp CTTSHHHHHHH-HHH-HHCCSCEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEE
T ss_pred CHHHHHHHHHH-HHH-hCCCCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEE
Confidence 34567654332 333 345779999999999999999988764 68899999999999999999999999999999
Q ss_pred echHhhhcccccCccceEEe
Q 006476 200 GTHSLLGSRVVYNNLGLLVV 219 (643)
Q Consensus 200 ~T~~~L~~~~~~~~l~llVi 219 (643)
+| ..+...+.+.++++||.
T Consensus 87 aT-~~~~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 87 AT-DVAARGLDIPQVDLVVH 105 (212)
T ss_dssp EC-TTTTCSSSCCCBSEEEE
T ss_pred ec-ChhhcCCCCccCcEEEE
Confidence 99 44555677788888774
No 131
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.06 E-value=0.035 Score=63.32 Aligned_cols=99 Identities=16% Similarity=0.262 Sum_probs=81.3
Q ss_pred chHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEech
Q 006476 123 GKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202 (643)
Q Consensus 123 GKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~ 202 (643)
|+....+..+......+.+++|.++|+.-+..+++.+.+. ++++..+++..+..++...++.+..|+++|+|||
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT- 496 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI- 496 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-
Confidence 4444444444445567899999999999999988888763 6889999999999999999999999999999999
Q ss_pred HhhhcccccCccceEEeecccccch
Q 006476 203 SLLGSRVVYNNLGLLVVDEEQRFGV 227 (643)
Q Consensus 203 ~~L~~~~~~~~l~llViDEah~~g~ 227 (643)
..+...+.+.++++||+=+++.+|+
T Consensus 497 ~~l~~GlDip~v~lVI~~d~d~~G~ 521 (664)
T 1c4o_A 497 NLLREGLDIPEVSLVAILDADKEGF 521 (664)
T ss_dssp CCCCTTCCCTTEEEEEETTTTSCSG
T ss_pred ChhhcCccCCCCCEEEEeCCcccCC
Confidence 5566667888999999999988776
No 132
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.03 E-value=0.015 Score=56.42 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=30.4
Q ss_pred HHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEE
Q 006476 95 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145 (643)
Q Consensus 95 ~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil 145 (643)
.+++..+.... ....+..++++||+|+|||..+-..+-.....+..++++
T Consensus 37 ~~~~~~l~~~~-~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~ 86 (242)
T 3bos_A 37 DELIGALKSAA-SGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYI 86 (242)
T ss_dssp HHHHHHHHHHH-HTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHH-hCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 44555444332 233578899999999999987654443333344444444
No 133
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.96 E-value=0.035 Score=63.19 Aligned_cols=100 Identities=19% Similarity=0.278 Sum_probs=81.0
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEec
Q 006476 122 FGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 201 (643)
Q Consensus 122 sGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T 201 (643)
.|+....+..+......+.+++|.++|+.-+..+++.+.+. ++++..+++..+..++...++.++.|+++|+|||
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT 502 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI 502 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEES
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEec
Confidence 34443333444444557889999999999999988888763 6889999999999999999999999999999999
Q ss_pred hHhhhcccccCccceEEeecccccch
Q 006476 202 HSLLGSRVVYNNLGLLVVDEEQRFGV 227 (643)
Q Consensus 202 ~~~L~~~~~~~~l~llViDEah~~g~ 227 (643)
. .+...+.+.++++||+=+++.+|+
T Consensus 503 ~-~l~~GlDip~v~lVi~~d~d~~G~ 527 (661)
T 2d7d_A 503 N-LLREGLDIPEVSLVAILDADKEGF 527 (661)
T ss_dssp C-CCSTTCCCTTEEEEEETTTTCCTT
T ss_pred c-hhhCCcccCCCCEEEEeCcccccC
Confidence 5 455567788999999999998875
No 134
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.89 E-value=0.012 Score=72.10 Aligned_cols=68 Identities=24% Similarity=0.240 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCC------CeEEEEeccHHHHHHHHHHHHH
Q 006476 88 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG------KQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 88 ~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g------~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
..+|+.|.++|..- +.+++|.|..|||||.+.+.-+...+..+ .+++++++|+..|.++.+++.+
T Consensus 9 ~~~t~eQ~~~i~~~---------~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIVST---------GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHHCC---------SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC---------CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 57899999997421 57899999999999999877776666553 3899999999999999999887
Q ss_pred Hhc
Q 006476 162 RFS 164 (643)
Q Consensus 162 ~~~ 164 (643)
.+.
T Consensus 80 ~l~ 82 (1232)
T 3u4q_A 80 ALE 82 (1232)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 135
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.83 E-value=0.055 Score=51.27 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
....+++.||+|+|||..+-.
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~ 57 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIA 57 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 344599999999999977643
No 136
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.78 E-value=0.1 Score=54.38 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=26.5
Q ss_pred CHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHH
Q 006476 91 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 91 tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
+..+.+.+...+........+..++++||+|+|||..+-..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~ 64 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLV 64 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHH
Confidence 44455555444433322355778999999999999876433
No 137
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.73 E-value=0.037 Score=56.79 Aligned_cols=34 Identities=15% Similarity=0.384 Sum_probs=21.4
Q ss_pred CccceEEeecccccc-hhHHHHHH----hcCCCceEEEe
Q 006476 212 NNLGLLVVDEEQRFG-VKQKEKIA----SFKISVDVLTL 245 (643)
Q Consensus 212 ~~l~llViDEah~~g-~~~~~~l~----~~~~~~~vl~l 245 (643)
.+.++|||||+|.+. ......+. ....+..+++.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~ 142 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIIT 142 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEE
Confidence 467899999999997 54433332 22345555553
No 138
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.69 E-value=0.075 Score=57.12 Aligned_cols=117 Identities=21% Similarity=0.194 Sum_probs=63.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe--ccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA--PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 188 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~--Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~ 188 (643)
+.-++++|++|+|||+.+...+......|++|+++. +.+.-+.+....+.... ++.+.......+... ...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~----gv~~~~~~~~~dp~~---i~~ 169 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQI----GVQVYGEPNNQNPIE---IAK 169 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTT----TCCEECCTTCSCHHH---HHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhc----CCceeeccccCCHHH---HHH
Confidence 567788999999999997665555556788887765 34444444444443322 343332222112111 000
Q ss_pred HHhcCCceEEEechHhhhcccccCccceEEeecccccc--hh-----H-HHHHHhcCCCceEEEeccCC
Q 006476 189 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFG--VK-----Q-KEKIASFKISVDVLTLSATP 249 (643)
Q Consensus 189 ~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g--~~-----~-~~~l~~~~~~~~vl~lSATp 249 (643)
.. .......+++++|||++-+.. .. . ........++.-++.++|+.
T Consensus 170 --------------~a-l~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 170 --------------KG-VDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp --------------HH-HHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred --------------HH-HHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 00 112234578999999998754 21 1 12222334555566777774
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.53 E-value=0.059 Score=51.72 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~ 131 (643)
+..+++.||+|+|||..+-..
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLL 65 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456899999999999876433
No 140
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.50 E-value=0.069 Score=54.71 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=24.2
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~ 130 (643)
|.+++..+.+.+..+ +....|+.||.|+|||..+..
T Consensus 2 ~~~~~~~L~~~i~~~-~~~~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 2 AKDQLETLKRIIEKS-EGISILINGEDLSYPREVSLE 37 (305)
T ss_dssp --CHHHHHHHHHHTC-SSEEEEEECSSSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHCC-CCcEEEEECCCCCCHHHHHHH
Confidence 556666666555333 355789999999999987644
No 141
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.31 E-value=0.029 Score=63.31 Aligned_cols=114 Identities=20% Similarity=0.179 Sum_probs=73.9
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 168 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~ 168 (643)
.+|.+|.+|+..+.+.. ..-.++.|+-|.|||.+.-+++.... ..++|.+|+.+-+....+ +...
T Consensus 175 ~~T~dQ~~al~~~~~~~-----~~~~vlta~RGRGKSa~lG~~~a~~~---~~~~vtAP~~~a~~~l~~-~~~~------ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMP-----PGVAAVTAARGRGKSALAGQLISRIA---GRAIVTAPAKASTDVLAQ-FAGE------ 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCC-----SEEEEEEECTTSSHHHHHHHHHHHSS---SCEEEECSSCCSCHHHHH-HHGG------
T ss_pred CCCHHHHHHHHHHHHhh-----hCeEEEecCCCCCHHHHHHHHHHHHH---hCcEEECCCHHHHHHHHH-HhhC------
Confidence 78999999998887522 23479999999999966655544432 357999999876664332 2110
Q ss_pred ceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHhcCCCceEEEeccC
Q 006476 169 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 248 (643)
Q Consensus 169 i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~~~~~~~vl~lSAT 248 (643)
. |-+..|..+.. ...+.++||||||=.+.....+.+.. ....++||.|
T Consensus 240 -~--------------------------i~~~~Pd~~~~--~~~~~dlliVDEAAaIp~pll~~ll~---~~~~v~~~tT 287 (671)
T 2zpa_A 240 -K--------------------------FRFIAPDALLA--SDEQADWLVVDEAAAIPAPLLHQLVS---RFPRTLLTTT 287 (671)
T ss_dssp -G--------------------------CCBCCHHHHHH--SCCCCSEEEEETGGGSCHHHHHHHHT---TSSEEEEEEE
T ss_pred -C--------------------------eEEeCchhhhh--CcccCCEEEEEchhcCCHHHHHHHHh---hCCeEEEEec
Confidence 0 11223333221 23468999999999988877666554 3334667777
Q ss_pred C
Q 006476 249 P 249 (643)
Q Consensus 249 p 249 (643)
.
T Consensus 288 v 288 (671)
T 2zpa_A 288 V 288 (671)
T ss_dssp B
T ss_pred C
Confidence 5
No 142
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.24 E-value=0.072 Score=64.51 Aligned_cols=96 Identities=17% Similarity=0.299 Sum_probs=81.8
Q ss_pred HHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccc
Q 006476 130 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209 (643)
Q Consensus 130 ~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~ 209 (643)
..+...+.++.+++|++|++.-+..+++.+++. +|+.++..++|..+..++...+..+.+|+++|+|+|. .+...+
T Consensus 803 ~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~---~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-v~e~Gi 878 (1151)
T 2eyq_A 803 EAILREILRGGQVYYLYNDVENIQKAAERLAEL---VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-IIETGI 878 (1151)
T ss_dssp HHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHH---CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-TTGGGS
T ss_pred HHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHh---CCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-cceeee
Confidence 344555667899999999999999999998875 3578999999999999999999999999999999996 566678
Q ss_pred ccCccceEEeecccccchhH
Q 006476 210 VYNNLGLLVVDEEQRFGVKQ 229 (643)
Q Consensus 210 ~~~~l~llViDEah~~g~~~ 229 (643)
++.++++||+..++.++..+
T Consensus 879 Dip~v~~VIi~~~~~~~l~~ 898 (1151)
T 2eyq_A 879 DIPTANTIIIERADHFGLAQ 898 (1151)
T ss_dssp CCTTEEEEEETTTTSSCHHH
T ss_pred cccCCcEEEEeCCCCCCHHH
Confidence 88999999999998887654
No 143
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.23 E-value=0.04 Score=49.59 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=17.6
Q ss_pred CCCCcEEEEccCCCchHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l 129 (643)
..+.++++.||+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 346789999999999998763
No 144
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=95.18 E-value=0.063 Score=56.74 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=69.2
Q ss_pred HHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhccc
Q 006476 130 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 209 (643)
Q Consensus 130 ~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~ 209 (643)
..++.....+.+++|.++++.-+..+++.+.+. ++.+..++|..+..++...++.+++|+.+|+|+|. .+...+
T Consensus 267 ~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-~~~~Gi 340 (417)
T 2i4i_A 267 LDLLNATGKDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VAARGL 340 (417)
T ss_dssp HHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-HHHTTS
T ss_pred HHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-hhhcCC
Confidence 333333335779999999999999999888763 68899999999999999999999999999999996 555667
Q ss_pred ccCccceEEe
Q 006476 210 VYNNLGLLVV 219 (643)
Q Consensus 210 ~~~~l~llVi 219 (643)
++.++++||.
T Consensus 341 dip~v~~Vi~ 350 (417)
T 2i4i_A 341 DISNVKHVIN 350 (417)
T ss_dssp CCCCEEEEEE
T ss_pred CcccCCEEEE
Confidence 7888888775
No 145
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.18 E-value=0.12 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=18.6
Q ss_pred CCCCcEEEEccCCCchHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
..+..+++.||+|+|||..+-..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~i 84 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKI 84 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHH
Confidence 44678999999999999887443
No 146
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.16 E-value=0.18 Score=51.82 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=17.8
Q ss_pred CCCCcEEEEccCCCchHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~ 130 (643)
.....+++.||+|+|||..+-.
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHH
Confidence 3456899999999999987643
No 147
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.13 E-value=0.15 Score=50.45 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=16.9
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l 129 (643)
.+..+++.|++|+|||..+-
T Consensus 28 ~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 35789999999999997763
No 148
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=95.04 E-value=0.082 Score=54.00 Aligned_cols=91 Identities=19% Similarity=0.222 Sum_probs=71.2
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEe
Q 006476 121 GFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 200 (643)
Q Consensus 121 GsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~ 200 (643)
...|..+.. -++.. ..+.+++|.++|+.-+..+++.+.+. ++.+..++|..+..++...++..++|..+|+|+
T Consensus 12 ~~~K~~~L~-~ll~~-~~~~~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVa 84 (300)
T 3i32_A 12 VRGRLEVLS-DLLYV-ASPDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVA 84 (300)
T ss_dssp SSSHHHHHH-HHHHH-HCCSSEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEE
T ss_pred HHHHHHHHH-HHHHh-cCCCCEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEE
Confidence 356765433 23333 34789999999999999888877653 689999999999999999999999999999999
Q ss_pred chHhhhcccccCccceEEe
Q 006476 201 THSLLGSRVVYNNLGLLVV 219 (643)
Q Consensus 201 T~~~L~~~~~~~~l~llVi 219 (643)
|. .+...+.+.++++||.
T Consensus 85 T~-va~~Gidi~~v~~VI~ 102 (300)
T 3i32_A 85 TD-VAARGLDIPQVDLVVH 102 (300)
T ss_dssp CS-TTTCSTTCCCCSEEEE
T ss_pred ec-hhhcCccccceeEEEE
Confidence 94 4445567788888774
No 149
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.01 E-value=0.16 Score=51.34 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=18.3
Q ss_pred CCCCcEEEEccCCCchHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
..+.++++.||+|+|||..+-..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKM 87 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHH
Confidence 34567999999999999887443
No 150
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.00 E-value=0.061 Score=51.26 Aligned_cols=39 Identities=23% Similarity=0.124 Sum_probs=34.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~ 149 (643)
...+++....|.|||.+++-.+++++..|.+|+|+.-.+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 357899999999999999999999999999999995433
No 151
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=95.00 E-value=0.21 Score=55.38 Aligned_cols=83 Identities=14% Similarity=0.222 Sum_probs=70.2
Q ss_pred HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccce
Q 006476 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216 (643)
Q Consensus 137 ~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~l 216 (643)
..+.+++|.++|+.-+..+++.+.+.+.. ++.+..++|..+..++...++.+++|+.+|+|+|. .+...+++.++++
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-~~~~GiDip~v~~ 413 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-VGARGMDFPNVHE 413 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-GGTSSCCCTTCCE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-hhhcCCCcccCCE
Confidence 34779999999999999999999876543 57899999999999999999999999999999995 4555677888888
Q ss_pred EEeecc
Q 006476 217 LVVDEE 222 (643)
Q Consensus 217 lViDEa 222 (643)
||.-..
T Consensus 414 VI~~~~ 419 (563)
T 3i5x_A 414 VLQIGV 419 (563)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 886543
No 152
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.92 E-value=0.14 Score=55.12 Aligned_cols=37 Identities=27% Similarity=0.289 Sum_probs=23.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHC--CCeEEEEec
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAP 147 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~--g~~vlil~P 147 (643)
+..+++.||+|+|||..+-..+-..... +..++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 5689999999999998764333222222 445555443
No 153
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.91 E-value=0.017 Score=62.64 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l 129 (643)
+...++++||+|+|||..+-
T Consensus 49 ~~~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHH
Confidence 34679999999999998764
No 154
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.90 E-value=0.038 Score=50.27 Aligned_cols=21 Identities=19% Similarity=0.225 Sum_probs=17.3
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
.+..+++.||+|+|||..+-.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467899999999999977543
No 155
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.89 E-value=0.014 Score=52.56 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCchHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~ 128 (643)
.+.++++.|++|+|||..+
T Consensus 26 ~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp CSSCEEEEEETTCCHHHHH
T ss_pred CCCcEEEECCCCccHHHHH
Confidence 3578999999999999765
No 156
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.82 E-value=0.092 Score=54.65 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=22.7
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~ 130 (643)
|...+..+.+.+..+..+..+++.||.|+|||..+-.
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~ 57 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHH
Confidence 3444444443332333344579999999999988643
No 157
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.67 E-value=0.14 Score=54.74 Aligned_cols=98 Identities=19% Similarity=0.162 Sum_probs=74.4
Q ss_pred CCCchHHHHHHHHHHHH--HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeC--------CCChHHHHHHHHH
Q 006476 120 VGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR--------FQSKAEKEEHLDM 189 (643)
Q Consensus 120 TGsGKT~~~l~~i~~~~--~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g--------~~~~~~~~~~~~~ 189 (643)
..++|.......+.... ..+.+++|.++++.-+..+++.+.+. ++++..++| ..+..++...++.
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~ 414 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDE 414 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHHH
Confidence 45667655444433333 45789999999999999998888764 688999999 7788888899999
Q ss_pred HhcCCceEEEechHhhhcccccCccceEEeeccc
Q 006476 190 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQ 223 (643)
Q Consensus 190 l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah 223 (643)
..+|+.+|+|+| ..+...+++.++++||+-+..
T Consensus 415 F~~~~~~vLv~T-~~~~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 415 FARGEFNVLVAT-SVGEEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp HHHTSCSEEEEC-GGGGGGGGSTTCCEEEESSCC
T ss_pred HhcCCceEEEEC-CccccCCCchhCCEEEEeCCC
Confidence 999999999999 556667888888888865543
No 158
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=94.49 E-value=0.29 Score=54.53 Aligned_cols=84 Identities=14% Similarity=0.219 Sum_probs=70.8
Q ss_pred HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccce
Q 006476 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216 (643)
Q Consensus 137 ~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~l 216 (643)
..+.+++|.++|+.-+..+++.+.+.+.. ++.+..++|..+..++...++.+++|+.+|+|+|. .+...+++.++++
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-~~~~GiDip~v~~ 362 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-VGARGMDFPNVHE 362 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-GGTSSCCCTTCCE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-hhhcCCCcccCCE
Confidence 34679999999999999999999876543 67899999999999999999999999999999996 4445677888888
Q ss_pred EEeeccc
Q 006476 217 LVVDEEQ 223 (643)
Q Consensus 217 lViDEah 223 (643)
||.-..-
T Consensus 363 VI~~~~p 369 (579)
T 3sqw_A 363 VLQIGVP 369 (579)
T ss_dssp EEEESCC
T ss_pred EEEcCCC
Confidence 8866543
No 159
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.48 E-value=0.41 Score=47.77 Aligned_cols=21 Identities=43% Similarity=0.540 Sum_probs=17.7
Q ss_pred CCCCcEEEEccCCCchHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l 129 (643)
..+..+++.||+|+|||..+-
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHH
Confidence 446789999999999998763
No 160
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.36 E-value=0.13 Score=53.06 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=66.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.++++.-+..+++.+.+. +..+..++|..+..++...++.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gid~~~~~~V 310 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-VMSRGIDVNDLNCV 310 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-THHHHCCCSCCSEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-hhhcCCCcccCCEE
Confidence 4678999999999999999888763 68899999999999999999999999999999994 45556777888888
Q ss_pred Eeec
Q 006476 218 VVDE 221 (643)
Q Consensus 218 ViDE 221 (643)
|.-.
T Consensus 311 i~~~ 314 (367)
T 1hv8_A 311 INYH 314 (367)
T ss_dssp EESS
T ss_pred EEec
Confidence 7543
No 161
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.28 E-value=0.12 Score=54.03 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=68.2
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.++++.-+..+++.+.+. ++.+..++|..+..++...++.+.+|+.+|+|+| ..+...+++.++++|
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-~~~~~Gidi~~~~~V 322 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-NLFGRGMDIERVNIA 322 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEES-CCCSSCBCCTTEEEE
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEC-ChhhcCCCcccCCEE
Confidence 5679999999999999999888764 6889999999999999999999999999999999 445556778888888
Q ss_pred Eeeccc
Q 006476 218 VVDEEQ 223 (643)
Q Consensus 218 ViDEah 223 (643)
|.-..-
T Consensus 323 i~~~~p 328 (391)
T 1xti_A 323 FNYDMP 328 (391)
T ss_dssp EESSCC
T ss_pred EEeCCC
Confidence 875543
No 162
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.25 E-value=0.25 Score=51.82 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=66.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.++++.-+..+++.+.+. +..+..++|..+..++...++.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidip~~~~V 338 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-VCARGIDVEQVSVV 338 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-GGTSSCCCTTEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-ccccCCCccCCCEE
Confidence 5679999999999999999988764 67899999999999999999999999999999995 45566778888888
Q ss_pred Ee
Q 006476 218 VV 219 (643)
Q Consensus 218 Vi 219 (643)
|.
T Consensus 339 i~ 340 (412)
T 3fht_A 339 IN 340 (412)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 163
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=94.25 E-value=0.22 Score=54.36 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=67.9
Q ss_pred HHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCcc
Q 006476 135 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNL 214 (643)
Q Consensus 135 ~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l 214 (643)
....+.+.+++..++.-+..+++.+.+ . +.++..++|..+..++...++...+|+.+|+|+|+..+...+++.++
T Consensus 343 ~~~~~~~~~ivf~~~~~~~~l~~~L~~----~-~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v 417 (510)
T 2oca_A 343 LAQKDENAFVMFKHVSHGKAIFDLIKN----E-YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNL 417 (510)
T ss_dssp HHTTTCEEEEEESSHHHHHHHHHHHHT----T-CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSE
T ss_pred HHhcCCCeEEEEecHHHHHHHHHHHHH----c-CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccC
Confidence 344566777777766666655555543 2 35899999999999999999999999999999999999888999999
Q ss_pred ceEEeecccc
Q 006476 215 GLLVVDEEQR 224 (643)
Q Consensus 215 ~llViDEah~ 224 (643)
++||+.....
T Consensus 418 ~~vi~~~~~~ 427 (510)
T 2oca_A 418 HHVVLAHGVK 427 (510)
T ss_dssp EEEEESSCCC
T ss_pred cEEEEeCCCC
Confidence 9999988774
No 164
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.15 E-value=0.25 Score=50.14 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=22.8
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~ 130 (643)
|.+++..+.+.+.. .+...+++.||+|+|||..+-.
T Consensus 30 ~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKT~la~~ 65 (327)
T 1iqp_A 30 QEHIVKRLKHYVKT-GSMPHLLFAGPPGVGKTTAALA 65 (327)
T ss_dssp CHHHHHHHHHHHHH-TCCCEEEEESCTTSSHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CCCCeEEEECcCCCCHHHHHHH
Confidence 44444444443322 2334699999999999987643
No 165
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.06 E-value=0.31 Score=50.49 Aligned_cols=40 Identities=30% Similarity=0.343 Sum_probs=26.5
Q ss_pred CHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHH
Q 006476 91 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 91 tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~ 130 (643)
+..+.+.+...+........+..+++.||+|+|||..+-.
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHH
Confidence 4455555554444322245577899999999999987644
No 166
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.03 E-value=0.15 Score=53.03 Aligned_cols=81 Identities=12% Similarity=0.218 Sum_probs=68.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.++++.-+..+++.+.+. +..+..++|..+..++...++.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidip~~~~V 315 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-VLARGIDIPTVSMV 315 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-GGSSSCCCTTEEEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-hhhcCCCcccCCEE
Confidence 4678999999999999999888764 67899999999999999999999999999999995 45556778889998
Q ss_pred Eeecccc
Q 006476 218 VVDEEQR 224 (643)
Q Consensus 218 ViDEah~ 224 (643)
|.-....
T Consensus 316 i~~~~p~ 322 (395)
T 3pey_A 316 VNYDLPT 322 (395)
T ss_dssp EESSCCB
T ss_pred EEcCCCC
Confidence 8755543
No 167
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.01 E-value=0.22 Score=50.87 Aligned_cols=20 Identities=45% Similarity=0.529 Sum_probs=17.1
Q ss_pred CCCCcEEEEccCCCchHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~ 128 (643)
..+..+++.|++|+|||.++
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 34678999999999999776
No 168
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.96 E-value=0.16 Score=53.40 Aligned_cols=77 Identities=9% Similarity=0.125 Sum_probs=65.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.++++.-+..+++.+.+. ++.+..++|..+..++...++.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidip~~~~V 330 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-LLTRGIDIQAVNVV 330 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-CSSSSCCCTTEEEE
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-ccccCCCccCCCEE
Confidence 4679999999999999999988874 68899999999999999999999999999999994 45556777888887
Q ss_pred Eee
Q 006476 218 VVD 220 (643)
Q Consensus 218 ViD 220 (643)
|.-
T Consensus 331 i~~ 333 (400)
T 1s2m_A 331 INF 333 (400)
T ss_dssp EES
T ss_pred EEe
Confidence 753
No 169
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.92 E-value=0.13 Score=48.53 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=33.7
Q ss_pred CHHHHHHHHHhHHhhccCC---CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEE
Q 006476 91 TPDQKKAFLDVERDLTERE---TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145 (643)
Q Consensus 91 tp~Q~~ai~~i~~~~~~~~---~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil 145 (643)
.+.|.+++..+.+.+.... .+..++++||+|+|||..+-..+-.....+..++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 31 DDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp SHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4466667665554332221 127899999999999987654443344445566554
No 170
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.88 E-value=0.17 Score=52.02 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=17.0
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
+..+++.||+|+|||..+-.
T Consensus 51 ~~~vLl~GppGtGKT~la~a 70 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKA 70 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 56799999999999987643
No 171
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.87 E-value=0.074 Score=53.95 Aligned_cols=19 Identities=42% Similarity=0.487 Sum_probs=16.0
Q ss_pred CcEEEEccCCCchHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~ 130 (643)
..+++.||+|+|||..+-.
T Consensus 48 ~~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp EEEEEESCSSSSHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHH
Confidence 3689999999999988743
No 172
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.79 E-value=0.43 Score=49.76 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=17.3
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~ 131 (643)
+..+|+.||+|+|||..+-..
T Consensus 84 ~~~iLL~GppGtGKT~la~al 104 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAV 104 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHH
Confidence 467999999999999887443
No 173
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.67 E-value=0.21 Score=51.66 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=24.8
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i 132 (643)
|..++..+...+..+ +....++.||.|+|||..+-..+
T Consensus 30 ~~~~~~~L~~~i~~g-~~~~~ll~Gp~G~GKTtla~~la 67 (340)
T 1sxj_C 30 QNEVITTVRKFVDEG-KLPHLLFYGPPGTGKTSTIVALA 67 (340)
T ss_dssp CHHHHHHHHHHHHTT-CCCCEEEECSSSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHH
Confidence 556666655544332 22248999999999998764433
No 174
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.63 E-value=1.4 Score=50.85 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=16.1
Q ss_pred cEEEEccCCCchHHHHHHH
Q 006476 113 DRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~~ 131 (643)
.++++||||+|||..+-..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~al 541 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARAL 541 (758)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5999999999999887443
No 175
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.63 E-value=0.24 Score=53.97 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=64.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCC--------CC---
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRF--------QS--- 179 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~--------~~--- 179 (643)
+....+.|-||||||.+....+. ..++.++|++|+...|.|+++.++..+.. +|.++-.. ..
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~---~~~~p~lvv~~~~~~A~~l~~~l~~~~~~----~v~~fp~~e~lpyd~~~p~~~ 86 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAE---RHAGPVVLIAPDMQNALRLHDEISQFTDQ----MVMNLADWETLPYDSFSPHQD 86 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHH---HSSSCEEEEESSHHHHHHHHHHHHHTCSS----CEEECCCCCSCTTCSSCCCHH
T ss_pred CCeEEEeCCCchHHHHHHHHHHH---HhCCCEEEEeCCHHHHHHHHHHHHhhCCC----cEEEEeCcccccccccCCChH
Confidence 45678999999999976433322 23667999999999999999999874321 24433321 01
Q ss_pred -hHHHHHHHHHHhcCCceEEEechHhhhcccc
Q 006476 180 -KAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV 210 (643)
Q Consensus 180 -~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~ 210 (643)
...+-..+..+..++..|||+|...+...+.
T Consensus 87 ~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~~~ 118 (483)
T 3hjh_A 87 IISSRLSTLYQLPTMQRGVLIVPVNTLMQRVC 118 (483)
T ss_dssp HHHHHHHHHHHGGGCCSSEEEEEHHHHHBCCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEHHHHhhcCC
Confidence 1234455677777878899999988876543
No 176
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.61 E-value=0.22 Score=53.61 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=36.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe--ccHHHHHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA--PTIVLAKQHFDVVSE 161 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~--Pt~~La~Q~~~~~~~ 161 (643)
+.-++++|++|+|||+.+...+......|++++++. |.+.-+.+....+.+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~ 152 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLD 152 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHG
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHH
Confidence 567889999999999998766655556788888876 555555554444443
No 177
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=92.69 E-value=0.013 Score=54.51 Aligned_cols=77 Identities=12% Similarity=0.178 Sum_probs=62.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.++++.-+..+++.+... ++.+..++|..+..++...++.+.+|+.+|+|+| ..+...+++.++++|
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gid~~~~~~V 102 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-DVAARGIDIPDVSHV 102 (170)
Confidence 3568999999999999888877653 6789999999888888889999999999999999 555555667777777
Q ss_pred Eee
Q 006476 218 VVD 220 (643)
Q Consensus 218 ViD 220 (643)
|.-
T Consensus 103 i~~ 105 (170)
T 2yjt_D 103 FNF 105 (170)
Confidence 653
No 178
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.55 E-value=0.95 Score=47.92 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=19.1
Q ss_pred CCCCCcEEEEccCCCchHHHHHHH
Q 006476 108 RETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 108 ~~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
-..++.+|+.||+|+|||+.+-..
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAi 202 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAV 202 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHH
Confidence 345788999999999999876433
No 179
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=93.48 E-value=0.076 Score=49.77 Aligned_cols=122 Identities=13% Similarity=0.175 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHH-HHCCCeEEEEeccHHHHHHHHHHHHHHhcCCC
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 167 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~-~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 167 (643)
..++.|..|+..++.+ .+.-.++.|.-|++||...+..+... -..|++|.+|+|+..-+.+..+...
T Consensus 34 ~~~~~~~~a~~~l~~s-----~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~~------- 101 (189)
T 2l8b_A 34 PRTAGYSDAVSVLAQD-----RPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDER------- 101 (189)
T ss_dssp CCHHHHHHHHHHHHHH-----SCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTTT-------
T ss_pred ccCccchhHHHHHhcc-----CCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhcC-------
Confidence 4457899999988763 24567889999999998865444433 3468999999999876664322211
Q ss_pred CceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeecccccchhHHHHHHh--cCCCceEEEe
Q 006476 168 DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIAS--FKISVDVLTL 245 (643)
Q Consensus 168 ~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~g~~~~~~l~~--~~~~~~vl~l 245 (643)
+.-.. ++.+..+.....|.+=+++|||||-.++.+..-.|.. ...+.|+|++
T Consensus 102 -l~~~t-------------------------~t~~~ll~~~~~~tp~s~lIVD~AekLS~kE~~~Lld~A~~~naqvvll 155 (189)
T 2l8b_A 102 -LSGEL-------------------------ITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLIT 155 (189)
T ss_dssp -CSSCS-------------------------SSTTTTTTTSCCCCCCCEEEEEESSSHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred -cCcce-------------------------eehhhhhcCCCCCCCCCEEEEechhhcCHHHHHHHHHHHHhcCCEEEEe
Confidence 11111 1233344444445666799999999998866544432 2467888876
Q ss_pred ccC
Q 006476 246 SAT 248 (643)
Q Consensus 246 SAT 248 (643)
--+
T Consensus 156 ~~~ 158 (189)
T 2l8b_A 156 DSG 158 (189)
T ss_dssp ESS
T ss_pred CCc
Confidence 544
No 180
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.44 E-value=1.2 Score=40.52 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=23.0
Q ss_pred HHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHH
Q 006476 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 97 ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i 132 (643)
.+..+.+.+. ...+..++++||+|+|||..+-..+
T Consensus 30 ~~~~l~~~l~-~~~~~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 30 EIRRTIQVLQ-RRTKNNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp HHHHHHHHHT-SSSSCEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHh-cCCCCceEEECCCCCCHHHHHHHHH
Confidence 3333444332 3446789999999999998764433
No 181
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.36 E-value=0.28 Score=50.61 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=23.6
Q ss_pred HHHHHHHhHHhh-ccCCCCCcEEEEccCCCchHHHHHH
Q 006476 94 QKKAFLDVERDL-TERETPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 94 Q~~ai~~i~~~~-~~~~~~~d~li~a~TGsGKT~~~l~ 130 (643)
|..++..+.+.+ .. .+...+++.||+|+|||..+-.
T Consensus 19 ~~~~~~~l~~~~~~~-~~~~~~ll~Gp~G~GKTtl~~~ 55 (354)
T 1sxj_E 19 NEELTNFLKSLSDQP-RDLPHLLLYGPNGTGKKTRCMA 55 (354)
T ss_dssp CHHHHHHHHTTTTCT-TCCCCEEEECSTTSSHHHHHHT
T ss_pred CHHHHHHHHHHHhhC-CCCCeEEEECCCCCCHHHHHHH
Confidence 555665555544 22 2233499999999999987643
No 182
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.31 E-value=0.23 Score=52.37 Aligned_cols=77 Identities=13% Similarity=0.174 Sum_probs=65.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.++++.-+..+++.+.+. ++.+..++|..+..++...++.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidi~~v~~V 348 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-VWARGLDVPQVSLI 348 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-GGSSSCCCTTEEEE
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-hhhCcCCcccCCEE
Confidence 4568999999999999998888763 68899999999999999999999999999999995 45556778888888
Q ss_pred Eee
Q 006476 218 VVD 220 (643)
Q Consensus 218 ViD 220 (643)
|.-
T Consensus 349 i~~ 351 (410)
T 2j0s_A 349 INY 351 (410)
T ss_dssp EES
T ss_pred EEE
Confidence 753
No 183
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=93.27 E-value=0.29 Score=54.81 Aligned_cols=76 Identities=11% Similarity=0.140 Sum_probs=65.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.++|+.-+.++++.+.+. ++.+..++++.+..++....+...+|+.+|+|+|.. +...+++.++++|
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a-~~~GID~p~V~~V 339 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL-----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA-FGMGIDKPDVRFV 339 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT-SCTTCCCSCEEEE
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech-hhcCCCcccccEE
Confidence 5789999999999999999998764 689999999999999999999999999999999953 3445667788887
Q ss_pred Ee
Q 006476 218 VV 219 (643)
Q Consensus 218 Vi 219 (643)
|.
T Consensus 340 I~ 341 (591)
T 2v1x_A 340 IH 341 (591)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 184
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.27 E-value=0.24 Score=50.05 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=24.1
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
|..++..+.+.+.. .+...+++.||+|+|||..+-..
T Consensus 22 ~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKt~la~~l 58 (319)
T 2chq_A 22 QDEVIQRLKGYVER-KNIPHLLFSGPPGTGKTATAIAL 58 (319)
T ss_dssp CHHHHHHHHTTTTT-TCCCCEEEESSSSSSHHHHHHHH
T ss_pred CHHHHHHHHHHHhC-CCCCeEEEECcCCcCHHHHHHHH
Confidence 45555555554422 33335999999999999876443
No 185
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.10 E-value=0.3 Score=52.35 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=64.6
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEE
Q 006476 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218 (643)
Q Consensus 139 g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llV 218 (643)
+.+++|.++++.-|..+++.+.+. ++.+..++|..+..++...++.+++|+.+|+|+|. .+...+++.++++||
T Consensus 300 ~~~~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-v~~rGlDi~~v~~VI 373 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-VASRGLDIKNIKHVI 373 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-GGTSSCCCTTCCEEE
T ss_pred CCCEEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-hhhCCCCcccCCEEE
Confidence 445999999999999999888763 68899999999999999999999999999999996 455567788888877
Q ss_pred e
Q 006476 219 V 219 (643)
Q Consensus 219 i 219 (643)
.
T Consensus 374 ~ 374 (434)
T 2db3_A 374 N 374 (434)
T ss_dssp E
T ss_pred E
Confidence 5
No 186
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=93.03 E-value=0.38 Score=52.96 Aligned_cols=76 Identities=13% Similarity=0.208 Sum_probs=65.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.++|+.-+.++++.+.+. ++.+..++++.+..++....+.+.+|+.+|+|+|.. +...+++.++++|
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a-~~~GiD~p~v~~V 308 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSK-----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA-FGMGINKPNVRFV 308 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT-SCTTTCCTTCCEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech-hhCCCCccCccEE
Confidence 5678999999999999999998764 688999999999999999999999999999999964 3445667788888
Q ss_pred Ee
Q 006476 218 VV 219 (643)
Q Consensus 218 Vi 219 (643)
|.
T Consensus 309 I~ 310 (523)
T 1oyw_A 309 VH 310 (523)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 187
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.02 E-value=0.42 Score=50.41 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=17.2
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
+..+|+.||+|+|||..+-.
T Consensus 148 ~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999987643
No 188
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=92.98 E-value=0.48 Score=47.44 Aligned_cols=97 Identities=13% Similarity=0.168 Sum_probs=72.8
Q ss_pred cCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcC-CceE
Q 006476 119 DVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG-HLNI 197 (643)
Q Consensus 119 ~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g-~~dI 197 (643)
...+||.......+......+.+++|.+.++..+..+...+.+.+ ++.+..++|..+..++...++...++ .+.+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v 167 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPSVKF 167 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH----CSCCCEECTTSCHHHHHHHHHHHHHCTTCCE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhc----CCcEEEEECCCCHHHHHHHHHHhcCCCCCCE
Confidence 346889877655555555678899999999999888888887643 56788899999999999999999988 6776
Q ss_pred EEechHhhhcccccCccceEEe
Q 006476 198 IVGTHSLLGSRVVYNNLGLLVV 219 (643)
Q Consensus 198 iI~T~~~L~~~~~~~~l~llVi 219 (643)
++.+.......+++...+.||+
T Consensus 168 ~L~st~~~g~Glnl~~a~~VI~ 189 (271)
T 1z5z_A 168 IVLSVKAGGFGINLTSANRVIH 189 (271)
T ss_dssp EEEECCTTCCCCCCTTCSEEEE
T ss_pred EEEehhhhcCCcCcccCCEEEE
Confidence 5555555555566666666554
No 189
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.96 E-value=0.57 Score=47.53 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=17.3
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
.+..++++||+|+|||..+-.
T Consensus 37 ~~~~vll~G~~GtGKT~la~~ 57 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHV 57 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHH
Confidence 356899999999999977643
No 190
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.94 E-value=0.21 Score=52.82 Aligned_cols=82 Identities=18% Similarity=0.239 Sum_probs=68.5
Q ss_pred hcCCeEEEEecCccChHHHHHHHHhhCC-CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccc----ccccccCCC
Q 006476 298 DRGGQVFYVLPRIKGLEEPMDFLQQAFP-GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE----SGLDIQNAN 372 (643)
Q Consensus 298 ~~~~qvlvf~~~~~~~e~l~~~L~~~~p-~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i~~----~GiDip~v~ 372 (643)
..+++++|++|++.-+..+++.++...+ ++++..+||+.+..++...+..+..|..+|+|+|+-.- .-++..+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 5678999999999999999999998654 78999999999999999999999999999999997211 125566888
Q ss_pred EEEEecC
Q 006476 373 TIIVQDV 379 (643)
Q Consensus 373 ~VI~~d~ 379 (643)
+||+..+
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 8887665
No 191
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.86 E-value=0.32 Score=50.04 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=15.8
Q ss_pred CcEEEEccCCCchHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~ 130 (643)
.++++.||+|+|||..+-.
T Consensus 59 ~~~ll~G~~G~GKT~la~~ 77 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILA 77 (353)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4599999999999987643
No 192
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.84 E-value=1.3 Score=44.86 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=17.9
Q ss_pred CCCCcEEEEccCCCchHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~ 130 (643)
..+..+++.||+|+|||..+-.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHH
Confidence 3467899999999999987643
No 193
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.84 E-value=0.24 Score=50.12 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=22.5
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
|..++..+.+.+.. .+...+++.||.|+|||..+-..
T Consensus 26 ~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKt~la~~l 62 (323)
T 1sxj_B 26 NKETIDRLQQIAKD-GNMPHMIISGMPGIGKTTSVHCL 62 (323)
T ss_dssp CTHHHHHHHHHHHS-CCCCCEEEECSTTSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CCCCeEEEECcCCCCHHHHHHHH
Confidence 33444444433322 33334999999999999876443
No 194
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.76 E-value=0.19 Score=52.44 Aligned_cols=49 Identities=27% Similarity=0.164 Sum_probs=37.3
Q ss_pred HHHHhHH--hhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEecc
Q 006476 97 AFLDVER--DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148 (643)
Q Consensus 97 ai~~i~~--~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt 148 (643)
.++.++. ++ +.+.-+++.|+.|+|||..++..+......+..++++.-.
T Consensus 48 ~LD~~Lg~GGl---~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 48 SLDVALGIGGL---PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp HHHHHTSSSSE---ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHhccCCc---cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4555554 33 2467789999999999999988887777788888888754
No 195
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.62 E-value=0.35 Score=53.20 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=22.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
+..++++||+|+|||..+-..+-.. +..++.+.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQN 109 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 4689999999999998764433222 55555443
No 196
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.47 E-value=0.17 Score=52.97 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=33.5
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~ 149 (643)
.+.-+++.|++|+|||..++..+......|..|+++....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4677899999999999999888887777888898887643
No 197
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.39 E-value=0.21 Score=52.47 Aligned_cols=50 Identities=18% Similarity=0.073 Sum_probs=37.6
Q ss_pred HHHHhHH--hhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccH
Q 006476 97 AFLDVER--DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 149 (643)
Q Consensus 97 ai~~i~~--~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~ 149 (643)
.++.++. ++ +.+.-++|.|++|+|||..++..+......+..|+++..-.
T Consensus 61 ~LD~~Lg~GGl---~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 61 SLDLALGVGGI---PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp HHHHHTSSSSE---ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHhCCCCc---cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4555553 33 24667899999999999999888877777788888887554
No 198
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.14 E-value=0.8 Score=49.95 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=17.8
Q ss_pred CCCCcEEEEccCCCchHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l 129 (643)
..+..+|+.||+|+|||.++-
T Consensus 236 ~~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHH
Confidence 446789999999999998763
No 199
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.97 E-value=0.37 Score=56.43 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=26.8
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
.|.+.+..+..-+. ...+.+++++||+|+|||..+-..+-.
T Consensus 174 Gr~~~i~~l~~~l~-~~~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 174 GRDEEIRRVIQILL-RRTKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp SCHHHHHHHHHHHH-CSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHh-cCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 34455555554442 345678999999999999876544433
No 200
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.94 E-value=0.62 Score=49.83 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=32.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe--ccHHHHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA--PTIVLAKQHFDVVS 160 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~--Pt~~La~Q~~~~~~ 160 (643)
+.-+.++|+.|+|||+.+...+......+++++++. +.+..+..+...+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~ 149 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLG 149 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhc
Confidence 455778899999999987655554445677777765 34444443333333
No 201
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.65 E-value=0.6 Score=50.10 Aligned_cols=45 Identities=22% Similarity=0.154 Sum_probs=32.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHC-CCeEEEEe--ccHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLA--PTIVLAKQH 155 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~-g~~vlil~--Pt~~La~Q~ 155 (643)
+..++++|+.|+|||+++...+...... |++|+++. |.+..+.++
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~q 147 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQ 147 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHH
Confidence 5577889999999999987766666666 88888875 444444443
No 202
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.64 E-value=0.29 Score=51.10 Aligned_cols=44 Identities=27% Similarity=0.183 Sum_probs=34.2
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 153 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~ 153 (643)
.+.-++|.||+|+|||..++..+......+..++++.....+..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDP 103 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccch
Confidence 35678999999999999888777776667888988876544433
No 203
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.55 E-value=0.24 Score=50.79 Aligned_cols=41 Identities=7% Similarity=0.064 Sum_probs=33.6
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHC--CCeEEEEeccHHHHH
Q 006476 113 DRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAK 153 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~~i~~~~~~--g~~vlil~Pt~~La~ 153 (643)
-+++.||.|+|||..++..+...... +..++++.....+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 57999999999999998888777665 778999887665544
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.19 E-value=8.6 Score=41.89 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=28.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
+..++++|++|+|||+.+...+......|.+++++..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4568889999999999986666555566888888775
No 205
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.07 E-value=0.33 Score=49.95 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=34.7
Q ss_pred HHHHhHH-hhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC------CCeEEEEeccH
Q 006476 97 AFLDVER-DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA------GKQAMVLAPTI 149 (643)
Q Consensus 97 ai~~i~~-~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~------g~~vlil~Pt~ 149 (643)
.++.++. ++ +.+.-+++.|++|+|||..++..+...... +..++++.-..
T Consensus 95 ~LD~~L~GGl---~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 95 ALDGLLAGGI---ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp HHHHHTTTSE---ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred hHHHhcCCCC---CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4555553 22 346778999999999999987777665433 56788876543
No 206
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.97 E-value=0.44 Score=48.66 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=34.1
Q ss_pred HHHHHHHHhHHhhccCC--CCCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEe
Q 006476 93 DQKKAFLDVERDLTERE--TPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLA 146 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~--~~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~ 146 (643)
.+..++..+.+.+...+ .+.++++.||+|+|||..+...+.... ..|..++++.
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45555554433222111 257899999999999988765555555 6677776654
No 207
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.66 E-value=0.44 Score=57.39 Aligned_cols=83 Identities=19% Similarity=0.239 Sum_probs=69.6
Q ss_pred HHhcCCeEEEEecCccChHHHHHHHHhhC-CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccc-----cccccccc
Q 006476 296 ELDRGGQVFYVLPRIKGLEEPMDFLQQAF-PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----VESGLDIQ 369 (643)
Q Consensus 296 ~l~~~~qvlvf~~~~~~~e~l~~~L~~~~-p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i-----~~~GiDip 369 (643)
.+..+.+++|++|+++-+..+++.++... .++++..+||+++..++...+..+.+|..+|+|+|+- +.. ++..
T Consensus 117 ~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~ 195 (1104)
T 4ddu_A 117 LARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQK 195 (1104)
T ss_dssp HHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTS
T ss_pred HHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hccc
Confidence 34577899999999999999999998843 3679999999999989999999999999999999962 222 6678
Q ss_pred CCCEEEEecC
Q 006476 370 NANTIIVQDV 379 (643)
Q Consensus 370 ~v~~VI~~d~ 379 (643)
++.+||+..+
T Consensus 196 ~l~~lViDEa 205 (1104)
T 4ddu_A 196 RFDFVFVDDV 205 (1104)
T ss_dssp CCSEEEESCH
T ss_pred CcCEEEEeCC
Confidence 8999998666
No 208
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.32 E-value=0.35 Score=46.85 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=36.3
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 160 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~ 160 (643)
.+.-+++.|++|+|||..++..+......+..++++.-.. -..++.+++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHH
Confidence 3667899999999999998877777777787888876432 3445544443
No 209
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=90.20 E-value=0.33 Score=53.19 Aligned_cols=99 Identities=15% Similarity=0.093 Sum_probs=45.5
Q ss_pred CCCchHHHHHHHHHHHH--HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEE--------EeCCCChHHHHHHHHH
Q 006476 120 VGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGL--------LSRFQSKAEKEEHLDM 189 (643)
Q Consensus 120 TGsGKT~~~l~~i~~~~--~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~--------l~g~~~~~~~~~~~~~ 189 (643)
..++|-......+.... ..+.+++|.++++..+..+++.+.+ ...++++++.. ++|+.+..++...++.
T Consensus 369 ~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~ 447 (556)
T 4a2p_A 369 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEE-NPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDA 447 (556)
T ss_dssp SCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTT-CSGGGSCCEEC------------------------
T ss_pred CCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHh-CCCcceeeeeEEEccCCcccccccCHHHHHHHHHH
Confidence 35777766544444433 4578999999999999998888765 22122334443 4455777788889999
Q ss_pred Hhc-CCceEEEechHhhhcccccCccceEEee
Q 006476 190 IKH-GHLNIIVGTHSLLGSRVVYNNLGLLVVD 220 (643)
Q Consensus 190 l~~-g~~dIiI~T~~~L~~~~~~~~l~llViD 220 (643)
+.+ |+++|+|+|. .+...+++.++++||.=
T Consensus 448 F~~~g~~~vLvaT~-~~~~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 448 FKTSKDNRLLIATS-VADEGIDIVQCNLVVLY 478 (556)
T ss_dssp ------CCEEEEEC------------CEEEEE
T ss_pred hcccCceEEEEEcC-chhcCCCchhCCEEEEe
Confidence 999 9999999994 45556778888888753
No 210
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.20 E-value=0.89 Score=52.36 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=25.7
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
|...+..+.+.+ ....+.+++++||+|+|||..+-..
T Consensus 191 r~~~i~~l~~~l-~~~~~~~vlL~G~~GtGKT~la~~l 227 (758)
T 1r6b_X 191 REKELERAIQVL-CRRRKNNPLLVGESGVGKTAIAEGL 227 (758)
T ss_dssp CHHHHHHHHHHH-TSSSSCEEEEECCTTSSHHHHHHHH
T ss_pred CHHHHHHHHHHH-hccCCCCeEEEcCCCCCHHHHHHHH
Confidence 445555555444 2446788999999999999876443
No 211
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.11 E-value=0.83 Score=49.26 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=39.9
Q ss_pred HHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CCCeEEEEeccHHHHHHHHHHH
Q 006476 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVV 159 (643)
Q Consensus 97 ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g~~vlil~Pt~~La~Q~~~~~ 159 (643)
.++.+..++ ..+.-+++.|++|+|||..++..+..... .|..|+++...-. ..|+..++
T Consensus 192 ~LD~~~gGl---~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s-~~~l~~r~ 251 (454)
T 2r6a_A 192 ELDRMTSGF---QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS-AQQLVMRM 251 (454)
T ss_dssp HHHHHHSSB---CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC-HHHHHHHH
T ss_pred HHHhhcCCC---CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHH
Confidence 456665444 34667899999999999988777776654 5778888874322 24555554
No 212
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.93 E-value=0.88 Score=47.70 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=26.4
Q ss_pred CHHHHHHHHHhH-HhhccC--CCCCcEEE--EccCCCchHHHHHHH
Q 006476 91 TPDQKKAFLDVE-RDLTER--ETPMDRLI--CGDVGFGKTEVALRA 131 (643)
Q Consensus 91 tp~Q~~ai~~i~-~~~~~~--~~~~d~li--~a~TGsGKT~~~l~~ 131 (643)
+..+.+.+...+ .....+ ..+..+++ .|+.|+|||..+-..
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~ 72 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFT 72 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHH
Confidence 455566665555 433222 34567888 899999999876443
No 213
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.82 E-value=1.6 Score=44.45 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=25.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
+.-++++|++|+|||+.+...+......+++++++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 445778999999999987555444445677776654
No 214
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=89.78 E-value=0.24 Score=52.05 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=56.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.++++.-+..+++.+.+. ++.+..++|..+..++...++.+.+|+.+|+|+|.- +...+++.++++|
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~~Gidip~v~~V 352 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHAR-----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL-LARGIDVQQVSLV 352 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTT-----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS-CC--CCGGGCSCE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhc-----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc-cccCCCccCCCEE
Confidence 3568999999999999988888653 688999999999999999999999999999999953 4445667778877
Q ss_pred Ee
Q 006476 218 VV 219 (643)
Q Consensus 218 Vi 219 (643)
|.
T Consensus 353 i~ 354 (414)
T 3eiq_A 353 IN 354 (414)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 215
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=89.76 E-value=0.6 Score=50.97 Aligned_cols=97 Identities=13% Similarity=0.146 Sum_probs=54.0
Q ss_pred CCchHHHHHHHHHHHH--HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEe--------CCCChHHHHHHHHHH
Q 006476 121 GFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLS--------RFQSKAEKEEHLDMI 190 (643)
Q Consensus 121 GsGKT~~~l~~i~~~~--~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~--------g~~~~~~~~~~~~~l 190 (643)
.++|.......+.... ..+.+++|.++++.-+..+++.+... +...++++..++ |+.+..++...++..
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 447 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEEN-PALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAF 447 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHC-GGGTTCCEEECCC----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhC-cCcCceeeeEEEecCCcccccccCHHHHHHHHHHH
Confidence 3577665544443333 24589999999999999999998763 322234444444 467777888899999
Q ss_pred hc-CCceEEEechHhhhcccccCccceEEe
Q 006476 191 KH-GHLNIIVGTHSLLGSRVVYNNLGLLVV 219 (643)
Q Consensus 191 ~~-g~~dIiI~T~~~L~~~~~~~~l~llVi 219 (643)
.+ |+++|+|+|. .+...+++.++++||.
T Consensus 448 ~~~g~~~vLvaT~-~~~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 448 RASGDNNILIATS-VADEGIDIAECNLVIL 476 (555)
T ss_dssp ----CCSEEEECC-CTTCCEETTSCSEEEE
T ss_pred hcCCCeeEEEEcc-hhhcCCccccCCEEEE
Confidence 98 9999999994 4555677778888775
No 216
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.58 E-value=1.1 Score=48.21 Aligned_cols=61 Identities=16% Similarity=0.033 Sum_probs=40.8
Q ss_pred HHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH-CCCeEEEEeccHHHHHHHHHHHHH
Q 006476 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 97 ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~-~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
.++.++.++ ..+.-+++.|++|+|||..++..+..... .|..|+++..- .-..|+..++..
T Consensus 189 ~LD~~lgGl---~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE-~~~~~l~~R~~~ 250 (444)
T 2q6t_A 189 ELDQLIGTL---GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE-MPAAQLTLRMMC 250 (444)
T ss_dssp HHHHHHCCC---CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS-SCHHHHHHHHHH
T ss_pred hhhhhcCCc---CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC-CCHHHHHHHHHH
Confidence 355555433 34567799999999999988887777665 47788887653 224455555543
No 217
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.57 E-value=0.45 Score=60.03 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=38.0
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 154 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q 154 (643)
+++..++++||+|+|||..+...+..+..+|.+++++.....+...
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l 1470 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI 1470 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHH
Confidence 4578999999999999999988888888889999999876444333
No 218
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=88.85 E-value=0.9 Score=42.61 Aligned_cols=78 Identities=12% Similarity=0.167 Sum_probs=58.9
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-----ccc-ccccccCCC
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVE-SGLDIQNAN 372 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~~p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~-----i~~-~GiDip~v~ 372 (643)
.+.+++|++|++.-+..+++.++...++.++..++|+.+.......+. +..+|+|+|. .+. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 457899999999999999999999888889999999987554433332 2578999995 222 245677888
Q ss_pred EEEEecCC
Q 006476 373 TIIVQDVQ 380 (643)
Q Consensus 373 ~VI~~d~p 380 (643)
+||...+.
T Consensus 147 ~iViDEah 154 (207)
T 2gxq_A 147 VAVLDEAD 154 (207)
T ss_dssp EEEEESHH
T ss_pred EEEEEChh
Confidence 88876554
No 219
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=88.79 E-value=0.91 Score=51.96 Aligned_cols=87 Identities=11% Similarity=0.124 Sum_probs=67.2
Q ss_pred HHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCC----------------------------CceEEEEeCCCChHHHH
Q 006476 133 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP----------------------------DIKVGLLSRFQSKAEKE 184 (643)
Q Consensus 133 ~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~----------------------------~i~v~~l~g~~~~~~~~ 184 (643)
...+..+++++|.+|++.-+...+..+.+.+..+. ...+..++++.+..++.
T Consensus 231 ~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~ 310 (720)
T 2zj8_A 231 YDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERV 310 (720)
T ss_dssp HHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred HHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHH
Confidence 34456789999999999999999988876543210 12489999999999999
Q ss_pred HHHHHHhcCCceEEEechHhhhcccccCccceEEeec
Q 006476 185 EHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDE 221 (643)
Q Consensus 185 ~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDE 221 (643)
...+...+|..+|+|+|. .+...+++.+..+ |||.
T Consensus 311 ~v~~~f~~g~~~vlvaT~-~l~~Gvdip~~~~-VI~~ 345 (720)
T 2zj8_A 311 LVEENFRKGIIKAVVATP-TLSAGINTPAFRV-IIRD 345 (720)
T ss_dssp HHHHHHHTTSSCEEEECS-TTGGGCCCCBSEE-EECC
T ss_pred HHHHHHHCCCCeEEEECc-HhhccCCCCceEE-EEcC
Confidence 999999999999999994 4555567777766 4443
No 220
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=88.77 E-value=1.8 Score=49.44 Aligned_cols=87 Identities=15% Similarity=0.093 Sum_probs=67.9
Q ss_pred HHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcC-C-C-----------------------------CceEEEEeCCCCh
Q 006476 132 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK-Y-P-----------------------------DIKVGLLSRFQSK 180 (643)
Q Consensus 132 i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~-~-~-----------------------------~i~v~~l~g~~~~ 180 (643)
+...+..+++++|.+|++.-+.+.++.+.+.+.. + + ...+..++++.+.
T Consensus 245 ~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 324 (715)
T 2va8_A 245 TLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSK 324 (715)
T ss_dssp HHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCH
T ss_pred HHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCH
Confidence 3444567899999999999999999888765432 0 0 1248899999999
Q ss_pred HHHHHHHHHHhcCCceEEEechHhhhcccccCccceEEe
Q 006476 181 AEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVV 219 (643)
Q Consensus 181 ~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llVi 219 (643)
.++....+...+|..+|+|+|. .+...+++.++.+||-
T Consensus 325 ~~r~~v~~~f~~g~~~vlvaT~-~l~~Gidip~~~~VI~ 362 (715)
T 2va8_A 325 ALRDLIEEGFRQRKIKVIVATP-TLAAGVNLPARTVIIG 362 (715)
T ss_dssp HHHHHHHHHHHTTCSCEEEECG-GGGGSSCCCBSEEEEC
T ss_pred HHHHHHHHHHHcCCCeEEEECh-HHhcccCCCceEEEEe
Confidence 9999999999999999999994 4555677788777554
No 221
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.63 E-value=0.86 Score=47.18 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=34.4
Q ss_pred HHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH------CCCeEEEEeccH
Q 006476 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVLAPTI 149 (643)
Q Consensus 97 ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~------~g~~vlil~Pt~ 149 (643)
.++.++.+ .-+.+.-+++.|++|+|||..++..+..... .+..++++.-..
T Consensus 110 ~LD~~LgG--Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 110 EFDKLLGG--GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHHTTS--SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred hHHHHhcC--CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 35555531 1234667899999999999988777665433 366788886544
No 222
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=88.49 E-value=2.3 Score=46.12 Aligned_cols=19 Identities=42% Similarity=0.539 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l 129 (643)
+..+++.||+|+|||..+-
T Consensus 49 p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999998763
No 223
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=88.34 E-value=0.79 Score=46.34 Aligned_cols=74 Identities=9% Similarity=0.124 Sum_probs=59.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.++++.-+..+++.+. ++..++|..+..++...++.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~---------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gid~~~~~~V 288 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD---------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-VASRGLDIPLVEKV 288 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT---------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-HHHTTCCCCCBSEE
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh---------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-ccccCCCccCCCEE
Confidence 46789999999988776544332 577899999999999999999999999999995 45556778888888
Q ss_pred Eeec
Q 006476 218 VVDE 221 (643)
Q Consensus 218 ViDE 221 (643)
|.-.
T Consensus 289 i~~~ 292 (337)
T 2z0m_A 289 INFD 292 (337)
T ss_dssp EESS
T ss_pred EEec
Confidence 8643
No 224
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=88.34 E-value=0.69 Score=53.50 Aligned_cols=81 Identities=6% Similarity=0.024 Sum_probs=64.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhc------CCCCceEEEEeCCCChHHHHHHHHHHh-----cCCceEEEechHhhh
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFS------KYPDIKVGLLSRFQSKAEKEEHLDMIK-----HGHLNIIVGTHSLLG 206 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~------~~~~i~v~~l~g~~~~~~~~~~~~~l~-----~g~~dIiI~T~~~L~ 206 (643)
.++++||.+|++.-+.+.++.+.+.+. ...++.+..++|..+..++...++... .|..+|+|+|. .+.
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~-iae 380 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN-IAE 380 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-HHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-HHH
Confidence 478999999999999999988875321 224789999999999999888888888 89999999995 344
Q ss_pred cccccCccceEEe
Q 006476 207 SRVVYNNLGLLVV 219 (643)
Q Consensus 207 ~~~~~~~l~llVi 219 (643)
..+.+.++.+||-
T Consensus 381 ~GidIp~v~~VId 393 (773)
T 2xau_A 381 TSLTIDGIVYVVD 393 (773)
T ss_dssp HTCCCTTEEEEEE
T ss_pred hCcCcCCeEEEEe
Confidence 4567777776663
No 225
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=88.28 E-value=1.2 Score=48.21 Aligned_cols=100 Identities=13% Similarity=0.159 Sum_probs=73.9
Q ss_pred CCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcC-CceEE
Q 006476 120 VGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG-HLNII 198 (643)
Q Consensus 120 TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g-~~dIi 198 (643)
..++|.......+......+.+++|.+.++..+..+.+.+...+ +..+..++|..+..++...++...+| ...++
T Consensus 322 ~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~----~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vi 397 (500)
T 1z63_A 322 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPSVKFI 397 (500)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHH----TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCC
T ss_pred hcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhh----CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEE
Confidence 35778766655555555678899999999999988888887643 46788899999999999999999888 56645
Q ss_pred EechHhhhcccccCccceEEeeccc
Q 006476 199 VGTHSLLGSRVVYNNLGLLVVDEEQ 223 (643)
Q Consensus 199 I~T~~~L~~~~~~~~l~llViDEah 223 (643)
+.+...+...+++...+.||+=+..
T Consensus 398 l~st~~~~~Glnl~~~~~vi~~d~~ 422 (500)
T 1z63_A 398 VLSVKAGGFGINLTSANRVIHFDRW 422 (500)
T ss_dssp EEECCCC-CCCCCTTCSEEEESSCC
T ss_pred EEecccccCCCchhhCCEEEEeCCC
Confidence 5554555556677778777775544
No 226
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=88.27 E-value=0.89 Score=54.01 Aligned_cols=97 Identities=11% Similarity=0.073 Sum_probs=76.7
Q ss_pred CCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCC--ceE
Q 006476 120 VGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH--LNI 197 (643)
Q Consensus 120 TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~--~dI 197 (643)
..+.|.... ..++.. ..+.+++|.++++.-+..+.+.+.+.+ |+++..++|..+..++...++.+.+|+ ++|
T Consensus 486 ~~~~K~~~L-~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~----g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~v 559 (968)
T 3dmq_A 486 NFDPRVEWL-MGYLTS-HRSQKVLVICAKAATALQLEQVLRERE----GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQV 559 (968)
T ss_dssp TTSHHHHHH-HHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTT----CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEE
T ss_pred CccHHHHHH-HHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccE
Confidence 344555443 233332 467899999999998888877776422 689999999999999999999999998 999
Q ss_pred EEechHhhhcccccCccceEEeeccc
Q 006476 198 IVGTHSLLGSRVVYNNLGLLVVDEEQ 223 (643)
Q Consensus 198 iI~T~~~L~~~~~~~~l~llViDEah 223 (643)
+|+| ..+...+++.++++||+-+..
T Consensus 560 LvaT-~v~~~GlDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 560 LLCS-EIGSEGRNFQFASHMVMFDLP 584 (968)
T ss_dssp EECS-CCTTCSSCCTTCCEEECSSCC
T ss_pred EEec-chhhcCCCcccCcEEEEecCC
Confidence 9999 667777888899999987776
No 227
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.93 E-value=0.8 Score=44.16 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=26.7
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHH------CCCeEEEEec
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVLAP 147 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~------~g~~vlil~P 147 (643)
.+.-+++.||+|+|||..+...+..... .+..++++.-
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 4677899999999999887665554322 1456777653
No 228
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.64 E-value=3.3 Score=42.52 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=24.8
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEE
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil 145 (643)
.+|.-+.++||+|+|||+..-..+......++.+++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 4467788999999999988643333333445566554
No 229
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=87.61 E-value=0.4 Score=51.53 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=49.8
Q ss_pred HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccce
Q 006476 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216 (643)
Q Consensus 137 ~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~l 216 (643)
..+.+++|.+|++.-+.++++.+++. ++++..++|. ++...++.+++|+.+|+|+|. .+...+++. +++
T Consensus 175 ~~~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~----~R~~~~~~F~~g~~~vLVaT~-v~e~GiDip-v~~ 243 (440)
T 1yks_A 175 ADKRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRK----TFEREYPTIKQKKPDFILATD-IAEMGANLC-VER 243 (440)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSS----SCC--------CCCSEEEESS-STTCCTTCC-CSE
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecch----hHHHHHhhhcCCCceEEEECC-hhheeeccC-ceE
Confidence 34789999999999999999988764 6789999982 345577888899999999994 344456666 777
Q ss_pred EE
Q 006476 217 LV 218 (643)
Q Consensus 217 lV 218 (643)
||
T Consensus 244 VI 245 (440)
T 1yks_A 244 VL 245 (440)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 230
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.45 E-value=0.4 Score=46.48 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=34.6
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEeccHHHHHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVS 160 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~Pt~~La~Q~~~~~~ 160 (643)
.+.-++++|++|+|||..++..+.+.. ..+..++++.-. .-..++.+++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E-~~~~~~~~~~~ 79 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE-ERARDLRREMA 79 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS-SCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc-CCHHHHHHHHH
Confidence 466789999999999999887776654 346677777643 33455555544
No 231
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=87.37 E-value=3.2 Score=48.03 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=67.4
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCce--EE
Q 006476 121 GFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN--II 198 (643)
Q Consensus 121 GsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~d--Ii 198 (643)
.+||.......+......|.++||.+..+..+.-+.+.+... ++++..++|..+..++...+....++..+ ++
T Consensus 554 ~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~-----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~ 628 (800)
T 3mwy_W 554 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK-----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVF 628 (800)
T ss_dssp TCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH-----TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCE
T ss_pred cChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEE
Confidence 467765544433344456789999999999888888877654 68899999999999999999998886555 45
Q ss_pred EechHhhhcccccCccceEEe
Q 006476 199 VGTHSLLGSRVVYNNLGLLVV 219 (643)
Q Consensus 199 I~T~~~L~~~~~~~~l~llVi 219 (643)
+.+.......+++...+.||+
T Consensus 629 LlSt~agg~GlNL~~a~~VI~ 649 (800)
T 3mwy_W 629 LLSTRAGGLGINLMTADTVVI 649 (800)
T ss_dssp EEEHHHHTTTCCCTTCCEEEE
T ss_pred EEecccccCCCCccccceEEE
Confidence 555555555566655555554
No 232
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.32 E-value=1.2 Score=45.55 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=43.7
Q ss_pred HHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHH
Q 006476 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSER 162 (643)
Q Consensus 97 ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~ 162 (643)
.++.++.++ ..+.-++++|++|+|||..++..+......+..++++..- .-..|+..++...
T Consensus 57 ~LD~~lgGl---~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 57 ELDRMTYGY---KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp HHHHHHSSB---CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHHHH
T ss_pred HHHhhcCCC---CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHHHH
Confidence 455555444 3466789999999999998888777777777788888744 4455555565543
No 233
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=87.03 E-value=0.85 Score=52.89 Aligned_cols=99 Identities=15% Similarity=0.067 Sum_probs=48.3
Q ss_pred CCchHHHHHHHHHHHH--HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCce--------EEEEeCCCChHHHHHHHHHH
Q 006476 121 GFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIK--------VGLLSRFQSKAEKEEHLDMI 190 (643)
Q Consensus 121 GsGKT~~~l~~i~~~~--~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~--------v~~l~g~~~~~~~~~~~~~l 190 (643)
.++|-......+.... ..+.+++|.++++..+..+++.+.+ ...+++++ ...++|+.+..++...++..
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~-~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F 689 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEE-NPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHT-CSTTCSCCCEEC------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHh-CcccccccceEEEecCCcccCCCCCHHHHHHHHHHh
Confidence 4778766544443322 4568999999999999999888875 22222333 34445557778888899999
Q ss_pred hc-CCceEEEechHhhhcccccCccceEEeec
Q 006476 191 KH-GHLNIIVGTHSLLGSRVVYNNLGLLVVDE 221 (643)
Q Consensus 191 ~~-g~~dIiI~T~~~L~~~~~~~~l~llViDE 221 (643)
++ |.++|+|+|. .+...+++.++++||.=+
T Consensus 690 ~~~g~~~vLVaT~-~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 690 KTSKDNRLLIATS-VADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp ----CCSEEEEEC-C-------CCCSEEEEES
T ss_pred hccCCceEEEEcC-chhcCCCchhCCEEEEeC
Confidence 98 9999999994 455567788888887633
No 234
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=86.91 E-value=1.9 Score=49.03 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=66.5
Q ss_pred HHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCC-------------------------CceEEEEeCCCChHHHHHH
Q 006476 132 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP-------------------------DIKVGLLSRFQSKAEKEEH 186 (643)
Q Consensus 132 i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~-------------------------~i~v~~l~g~~~~~~~~~~ 186 (643)
+...+..+++++|.+|++.-+...+..+.+.+..+. +..+..++++.+..++...
T Consensus 235 ~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 314 (702)
T 2p6r_A 235 VEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVV 314 (702)
T ss_dssp HHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHH
T ss_pred HHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHH
Confidence 344556789999999999999999888876533210 1247889999999999999
Q ss_pred HHHHhcCCceEEEechHhhhcccccCccceEEe
Q 006476 187 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVV 219 (643)
Q Consensus 187 ~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llVi 219 (643)
.+...+|..+|+|+|.- +...+++.+..+||-
T Consensus 315 ~~~f~~g~~~vlvaT~~-l~~Gidip~~~~VI~ 346 (702)
T 2p6r_A 315 EDAFRRGNIKVVVATPT-LAAGVNLPARRVIVR 346 (702)
T ss_dssp HHHHHTTSCCEEEECST-TTSSSCCCBSEEEEC
T ss_pred HHHHHCCCCeEEEECcH-HhccCCCCceEEEEc
Confidence 99999999999999964 444566777766553
No 235
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=86.87 E-value=0.12 Score=55.97 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEE
Q 006476 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218 (643)
Q Consensus 139 g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llV 218 (643)
+.+++|.||++.-+..+++.+.+. +..+..++|..+..++...++.+.+|+.+|+|+|. .+...+++.++++||
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-~~~~GlDip~v~~VI 406 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-VCARGIDVEQVSVVI 406 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC-----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-ccccCCccccCCEEE
Confidence 468999999999998888887653 67899999999988999999999999999999994 455567777888876
No 236
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=86.37 E-value=2.3 Score=43.07 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=26.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
+.-++++|++|+|||..+...+......|++++++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 445778999999999987655555555677777764
No 237
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=86.17 E-value=0.96 Score=46.20 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=37.1
Q ss_pred HHHHhHH-hhccCCCCCcEEEEccCCCchHHHHHHHHHHHH------------HCC----CeEEEEeccHHH-HHHHHHH
Q 006476 97 AFLDVER-DLTERETPMDRLICGDVGFGKTEVALRAIFCVV------------SAG----KQAMVLAPTIVL-AKQHFDV 158 (643)
Q Consensus 97 ai~~i~~-~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~------------~~g----~~vlil~Pt~~L-a~Q~~~~ 158 (643)
.++.++. ++ +.+.-+++.|++|+|||..++..+.... ..| ..++++.-...+ ..++.+.
T Consensus 86 ~LD~~l~GGl---~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~ 162 (322)
T 2i1q_A 86 ELDSVLGGGL---ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM 162 (322)
T ss_dssp HHHHHTTSSE---ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH
T ss_pred hHHHhcCCCc---cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH
Confidence 4555553 22 3466789999999999999877766532 123 577777654332 3444444
Q ss_pred H
Q 006476 159 V 159 (643)
Q Consensus 159 ~ 159 (643)
+
T Consensus 163 ~ 163 (322)
T 2i1q_A 163 A 163 (322)
T ss_dssp H
T ss_pred H
Confidence 4
No 238
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.08 E-value=0.76 Score=49.10 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=33.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 153 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~ 153 (643)
..++++.|+||||||......+...+..|..++|+=|.-++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 4679999999999998754444555667888999989877754
No 239
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=85.97 E-value=0.48 Score=53.89 Aligned_cols=79 Identities=14% Similarity=0.261 Sum_probs=59.4
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHH--hcCCCCceEEEEeCC--------CChHHHHHHHHHHhcCCceEEEechHhhhcc
Q 006476 139 GKQAMVLAPTIVLAKQHFDVVSER--FSKYPDIKVGLLSRF--------QSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 208 (643)
Q Consensus 139 g~~vlil~Pt~~La~Q~~~~~~~~--~~~~~~i~v~~l~g~--------~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~ 208 (643)
+.++||.++++..+..+++.+.+. +.. .|+++..++|. .+..++...++.+.+|+.+|+|+|. .+...
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~-~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-~~~~G 477 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAE-VGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-VAEEG 477 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-SCCTT
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccc-cCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-ccccC
Confidence 789999999999999999888753 211 26889999998 8899999999999999999999995 34455
Q ss_pred cccCccceEEe
Q 006476 209 VVYNNLGLLVV 219 (643)
Q Consensus 209 ~~~~~l~llVi 219 (643)
+++.++++||.
T Consensus 478 IDip~v~~VI~ 488 (699)
T 4gl2_A 478 LDIKECNIVIR 488 (699)
T ss_dssp SCCCSCCCCEE
T ss_pred CccccCCEEEE
Confidence 67788888773
No 240
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.80 E-value=3.5 Score=41.61 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=25.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
+.-+.++|+.|+|||..+...+......+++++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 456778899999999887555544445677777764
No 241
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=85.50 E-value=2.4 Score=40.20 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=58.7
Q ss_pred CCeEEEEecCccChHHHHHHHHhhC---CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccc-----c-cccccccC
Q 006476 300 GGQVFYVLPRIKGLEEPMDFLQQAF---PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----V-ESGLDIQN 370 (643)
Q Consensus 300 ~~qvlvf~~~~~~~e~l~~~L~~~~---p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i-----~-~~GiDip~ 370 (643)
+.+++|++|++.-++.+++.++... ++.++..++|+.+...... .+.++..+|+|+|.- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 3589999999998888888887664 4789999999988665543 344567899999962 1 23467788
Q ss_pred CCEEEEecCCC
Q 006476 371 ANTIIVQDVQQ 381 (643)
Q Consensus 371 v~~VI~~d~p~ 381 (643)
+++||+..+..
T Consensus 159 ~~~lViDEah~ 169 (220)
T 1t6n_A 159 IKHFILDECDK 169 (220)
T ss_dssp CCEEEEESHHH
T ss_pred CCEEEEcCHHH
Confidence 88888766553
No 242
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=85.45 E-value=1.1 Score=50.97 Aligned_cols=70 Identities=9% Similarity=0.169 Sum_probs=55.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.+|++.-+..+++.+.+. ++++..++|. ++...++.+++|+.+|+|+|. .+...+++. +++|
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTd-v~e~GIDip-v~~V 477 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTD-ISEMGANFG-ASRV 477 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSS----SHHHHGGGGGTCCCSEEEECG-GGGTTCCCC-CSEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChH----HHHHHHHHHHCCCceEEEECc-hhhcceeeC-CcEE
Confidence 4779999999999999988888753 6889999982 566788889999999999994 444455666 6665
Q ss_pred E
Q 006476 218 V 218 (643)
Q Consensus 218 V 218 (643)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 243
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=84.72 E-value=1.1 Score=50.76 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=51.3
Q ss_pred CCchHHHHHHHHHHHH--HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeC--------CCChHHHHHHHHHH
Q 006476 121 GFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR--------FQSKAEKEEHLDMI 190 (643)
Q Consensus 121 GsGKT~~~l~~i~~~~--~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g--------~~~~~~~~~~~~~l 190 (643)
..+|.......+.... ..+.+++|.++++.-+..+++.+.+ .+.+.++++..++| +.+..++...++..
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~-~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F 456 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEG-NPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 456 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHH-CTTCCSCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHh-CCCccccceeEEEccCCCccccCCCHHHHHHHHHHH
Confidence 3455544333322222 2467899999999999999999876 33333477777754 77777888889999
Q ss_pred hc-CCceEEEechHhhhcccccCccceEEee
Q 006476 191 KH-GHLNIIVGTHSLLGSRVVYNNLGLLVVD 220 (643)
Q Consensus 191 ~~-g~~dIiI~T~~~L~~~~~~~~l~llViD 220 (643)
.+ |+.+|+|+|. .+...+++.++++||.=
T Consensus 457 ~~~g~~~vLVaT~-v~~~GiDip~v~~VI~~ 486 (696)
T 2ykg_A 457 KASGDHNILIATS-VADEGIDIAQCNLVILY 486 (696)
T ss_dssp ----CCSCSEEEE-SSCCC---CCCSEEEEE
T ss_pred HhcCCccEEEEec-hhhcCCcCccCCEEEEe
Confidence 98 9999999994 44455677888888753
No 244
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=84.30 E-value=0.99 Score=42.97 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=27.4
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
.+.-+++.||+|+|||..+...+......+..++++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 35678999999999998876555444445667777653
No 245
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.17 E-value=1.2 Score=44.55 Aligned_cols=21 Identities=52% Similarity=0.800 Sum_probs=17.6
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
.+..+++.||+|+|||..+-.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~ 69 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARR 69 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 467899999999999987643
No 246
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=84.10 E-value=1.3 Score=52.31 Aligned_cols=100 Identities=16% Similarity=0.094 Sum_probs=50.2
Q ss_pred CCchHHHHHHHHHHHH--HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEE--------EEeCCCChHHHHHHHHHH
Q 006476 121 GFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVG--------LLSRFQSKAEKEEHLDMI 190 (643)
Q Consensus 121 GsGKT~~~l~~i~~~~--~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~--------~l~g~~~~~~~~~~~~~l 190 (643)
.++|.......+.... ..+.++||.++++..+..+.+.+.+. ..++++++. .++|+.+..++...++.+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~-~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~F 689 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEEN-PILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHC-STTSSCCCEEC------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhC-ccccccceeEEecCCCcccCCCCCHHHHHHHHHHh
Confidence 4677655443333322 34689999999999999999988763 222234433 445667778888899999
Q ss_pred hc-CCceEEEechHhhhcccccCccceEEeecc
Q 006476 191 KH-GHLNIIVGTHSLLGSRVVYNNLGLLVVDEE 222 (643)
Q Consensus 191 ~~-g~~dIiI~T~~~L~~~~~~~~l~llViDEa 222 (643)
.+ |.++|+|+|. .+...+++.++++||.=+.
T Consensus 690 r~~g~~~VLVaT~-~~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 690 KTSKDNRLLIATS-VADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp ----CCSEEEEEC-C------CCCCSEEEEESC
T ss_pred hccCCeeEEEEeC-chhcCCcchhCCEEEEeCC
Confidence 98 9999999995 4445577888888886443
No 247
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.70 E-value=1.7 Score=54.14 Aligned_cols=47 Identities=21% Similarity=0.159 Sum_probs=41.4
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 155 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~ 155 (643)
+++.-+.+.||.|||||..++..+..+...|..++++.+-.+|....
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY 1475 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH
Confidence 35667899999999999999999988888999999999988887775
No 248
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=83.70 E-value=1.9 Score=45.98 Aligned_cols=65 Identities=12% Similarity=0.088 Sum_probs=51.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccC
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYN 212 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~ 212 (643)
.+++++|.+|++.-+..+++.+.+. +.++..++|. ++...++.+++|+.+|+|+|. .+...+++.
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~-v~e~GiDip 234 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRK----TFESEYPKCKSEKWDFVITTD-ISEMGANFK 234 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTT----THHHHTTHHHHSCCSEEEECG-GGGTSCCCC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECc-hHHcCcccC
Confidence 3668999999999999999988764 6789999984 455678888999999999995 343344454
No 249
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=83.48 E-value=1.3 Score=44.90 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=27.2
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEe
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLA 146 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~ 146 (643)
++.-++++|++|+|||+.+...+.... ..|++|+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 467789999999999998755554444 3677777764
No 250
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.36 E-value=1.4 Score=46.92 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC-CCeEEEE
Q 006476 89 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVL 145 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-g~~vlil 145 (643)
..++.+..++..++. ..+.-++++||||||||+.. .+++..+.. .+.++++
T Consensus 150 g~~~~~~~~L~~l~~-----~~ggii~I~GpnGSGKTTlL-~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIK-----RPHGIILVTGPTGSGKSTTL-YAGLQELNSSERNILTV 201 (418)
T ss_dssp CCCHHHHHHHHHHHT-----SSSEEEEEECSTTSCHHHHH-HHHHHHHCCTTSCEEEE
T ss_pred CCCHHHHHHHHHHHH-----hcCCeEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEEe
Confidence 345667767666632 33456899999999999764 333333332 3445544
No 251
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=82.98 E-value=1.4 Score=42.76 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=29.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEE
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil 145 (643)
..++++.++.|+|||..++..+......|..|+++
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 35789999999999999988888888888877544
No 252
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=82.74 E-value=1.3 Score=42.27 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=24.8
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHH------CCCeEEEEecc
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVLAPT 148 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~------~g~~vlil~Pt 148 (643)
.+.-+.+.||+|+|||+.+...+-.... .+..++++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 3567889999999999876544332221 13456666543
No 253
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=82.02 E-value=0.27 Score=51.18 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceEE
Q 006476 139 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218 (643)
Q Consensus 139 g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llV 218 (643)
+.+++|.++++.-+...++.+.+. +..+..++|..+..++...++.+.+|+.+|+|+|. .+...+++.++++||
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gldi~~~~~Vi 332 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-LLARGIDVQQVSLVI 332 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc-----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC-hhhcCCCcccCCEEE
Confidence 568999999999998888877653 67889999988888888889999999999999996 344456677777776
Q ss_pred e
Q 006476 219 V 219 (643)
Q Consensus 219 i 219 (643)
.
T Consensus 333 ~ 333 (394)
T 1fuu_A 333 N 333 (394)
T ss_dssp -
T ss_pred E
Confidence 4
No 254
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=81.68 E-value=0.27 Score=53.88 Aligned_cols=78 Identities=14% Similarity=0.200 Sum_probs=55.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.++++.-|..+++.+.+. +..+..++|+.+..++...++.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~-----~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-~l~~GiDip~v~~V 429 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTAD-----GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-VIARGIDVSQVNLV 429 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTT-----TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC------CCCTTCCEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-hhhcCCCccCCCEE
Confidence 4578999999999998888777542 67889999988887888888899999999999996 55566788888888
Q ss_pred Eeec
Q 006476 218 VVDE 221 (643)
Q Consensus 218 ViDE 221 (643)
|...
T Consensus 430 I~~~ 433 (508)
T 3fho_A 430 VNYD 433 (508)
T ss_dssp EC--
T ss_pred EEEC
Confidence 8543
No 255
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=81.63 E-value=1.4 Score=41.67 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=26.7
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
.+.-+++.|++|+|||..+...+. ..+..++++.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEEC
Confidence 466789999999999988766555 44677777753
No 256
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=81.62 E-value=1.6 Score=40.25 Aligned_cols=37 Identities=27% Similarity=0.245 Sum_probs=25.7
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
+++.++++|+.|||||.++-..+-..-..|..+.++-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 4677899999999999987554443334566665553
No 257
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=81.49 E-value=2.6 Score=40.45 Aligned_cols=75 Identities=11% Similarity=0.080 Sum_probs=56.0
Q ss_pred CCeEEEEecCccChHHHHHHHHhhC---CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccc-----c-cccccccC
Q 006476 300 GGQVFYVLPRIKGLEEPMDFLQQAF---PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----V-ESGLDIQN 370 (643)
Q Consensus 300 ~~qvlvf~~~~~~~e~l~~~L~~~~---p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i-----~-~~GiDip~ 370 (643)
+.+++|++|+++-++.+++.++... ++.++..++|+.+..++...+ ...+|+|+|.- + ...++..+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 4689999999999999998888764 478899999998876654433 35799999962 1 23456777
Q ss_pred CCEEEEecC
Q 006476 371 ANTIIVQDV 379 (643)
Q Consensus 371 v~~VI~~d~ 379 (643)
+++||+..+
T Consensus 167 ~~~lViDEa 175 (230)
T 2oxc_A 167 IRLFILDEA 175 (230)
T ss_dssp CCEEEESSH
T ss_pred CCEEEeCCc
Confidence 888876544
No 258
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.43 E-value=2.2 Score=45.63 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=24.4
Q ss_pred CCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 108 RETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 108 ~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
-..++.+|+.||+|+|||+.+-..+-.. +...+.+..
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~ 248 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPA 248 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 3457889999999999998764433332 444444433
No 259
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=81.37 E-value=1.6 Score=45.94 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=31.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 150 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~ 150 (643)
+.+++++|+||+|||...-..+......+.+++++=|..+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 5689999999999998765555555566788888888755
No 260
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=81.29 E-value=3.3 Score=40.00 Aligned_cols=78 Identities=10% Similarity=0.169 Sum_probs=56.4
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhC--CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-----ccc-ccccccC
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQAF--PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVE-SGLDIQN 370 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~~--p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~-----i~~-~GiDip~ 370 (643)
.+.+++|++|+++-++.+++.++... .+..+..++|+.+.......+.. ..+|+|+|+ .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 35689999999988888877776542 36789999999987665554432 478999995 222 2357888
Q ss_pred CCEEEEecCC
Q 006476 371 ANTIIVQDVQ 380 (643)
Q Consensus 371 v~~VI~~d~p 380 (643)
+.+||+..++
T Consensus 177 ~~~lViDEah 186 (242)
T 3fe2_A 177 TTYLVLDEAD 186 (242)
T ss_dssp CCEEEETTHH
T ss_pred ccEEEEeCHH
Confidence 8888865443
No 261
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=80.96 E-value=4.4 Score=45.95 Aligned_cols=77 Identities=8% Similarity=0.036 Sum_probs=62.5
Q ss_pred EEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhc--CCceEEEechHhhhcccccCccceEEe
Q 006476 142 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH--GHLNIIVGTHSLLGSRVVYNNLGLLVV 219 (643)
Q Consensus 142 vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~--g~~dIiI~T~~~L~~~~~~~~l~llVi 219 (643)
.+|+++++.-+.++++.+.+. ++.+..++|..+..++..+.+.+.+ |..+|+|+|. .+...+++ ++.+||.
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~-----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-i~e~GlDi-~v~~VI~ 395 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR-----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-AIGMGLNL-SIRRIIF 395 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-GGGSSCCC-CBSEEEE
T ss_pred CEEEEcCHHHHHHHHHHHHhc-----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-HHHCCcCc-CccEEEE
Confidence 466688888888888887763 6889999999999999999999998 8899999996 44455777 8888888
Q ss_pred eccccc
Q 006476 220 DEEQRF 225 (643)
Q Consensus 220 DEah~~ 225 (643)
-...++
T Consensus 396 ~~~~k~ 401 (677)
T 3rc3_A 396 YSLIKP 401 (677)
T ss_dssp SCSBC-
T ss_pred CCcccc
Confidence 777765
No 262
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.95 E-value=1.9 Score=46.07 Aligned_cols=37 Identities=27% Similarity=0.274 Sum_probs=24.3
Q ss_pred CCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 108 RETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 108 ~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
-..++.+|+.||+|+|||..+-..+-.. +...+.+..
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~ 248 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAA 248 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEeh
Confidence 3457889999999999998764333322 444444443
No 263
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=80.72 E-value=0.69 Score=49.79 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=60.4
Q ss_pred HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccce
Q 006476 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 216 (643)
Q Consensus 137 ~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~l 216 (643)
..+.+++|.++++..+..+++.+ .+..++|..+..++...++.+.+|+++|+|+| ..+...+++.++++
T Consensus 347 ~~~~k~lvF~~~~~~~~~l~~~l----------~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T-~~~~~Gldlp~~~~ 415 (472)
T 2fwr_A 347 HRKDKIIIFTRHNELVYRISKVF----------LIPAITHRTSREEREEILEGFRTGRFRAIVSS-QVLDEGIDVPDANV 415 (472)
T ss_dssp TSSSCBCCBCSCHHHHHHHHHHT----------TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCS-SCCCSSSCSCCBSE
T ss_pred CCCCcEEEEECCHHHHHHHHHHh----------CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEc-CchhcCcccccCcE
Confidence 45789999999998877765544 13457788888888899999999999999999 67777788888988
Q ss_pred EEeeccc
Q 006476 217 LVVDEEQ 223 (643)
Q Consensus 217 lViDEah 223 (643)
||+=...
T Consensus 416 Vi~~~~~ 422 (472)
T 2fwr_A 416 GVIMSGS 422 (472)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 8874433
No 264
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=80.59 E-value=4 Score=38.03 Aligned_cols=77 Identities=12% Similarity=0.199 Sum_probs=55.3
Q ss_pred CCeEEEEecCccChHHHHHHHHhhC---CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-----cccc-cccccC
Q 006476 300 GGQVFYVLPRIKGLEEPMDFLQQAF---PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVES-GLDIQN 370 (643)
Q Consensus 300 ~~qvlvf~~~~~~~e~l~~~L~~~~---p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~-----i~~~-GiDip~ 370 (643)
+.+++|++|++.-++.+++.++... ++..+..++|+.+..+.... + .+..+|+|+|+ .+.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 4689999999988888888887664 36789999999876543322 2 35679999996 2222 346778
Q ss_pred CCEEEEecCC
Q 006476 371 ANTIIVQDVQ 380 (643)
Q Consensus 371 v~~VI~~d~p 380 (643)
+++||...+.
T Consensus 147 ~~~lViDEah 156 (206)
T 1vec_A 147 VQMIVLDEAD 156 (206)
T ss_dssp CCEEEEETHH
T ss_pred CCEEEEEChH
Confidence 8888875544
No 265
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=80.48 E-value=2.8 Score=43.24 Aligned_cols=41 Identities=27% Similarity=0.233 Sum_probs=25.0
Q ss_pred CHHHHHHHHHhHHhhccC-CCCCcEEEEccCCCchHHHHHHH
Q 006476 91 TPDQKKAFLDVERDLTER-ETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 91 tp~Q~~ai~~i~~~~~~~-~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
.+.+.+++..+...+... ..+..+++.||+|+|||..+-..
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~l 90 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGM 90 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHH
Confidence 344444444444333222 22468999999999999876443
No 266
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=80.48 E-value=2.6 Score=45.28 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=54.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+++++|.+|++.-+.++++.+.+. ++++..+++.. +...++.+++|+.+|+|+|. .+...+++.+ .+|
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~-v~~~GiDip~-~~V 255 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTD-ISEMGANFRA-GRV 255 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTT----HHHHGGGGGSSCCSEEEECG-GGGSSCCCCC-SEE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHH----HHHHHHhhccCCceEEEECC-HHHhCcCCCC-CEE
Confidence 4678999999999999988888753 67888888743 34577888899999999994 4555566766 655
Q ss_pred E
Q 006476 218 V 218 (643)
Q Consensus 218 V 218 (643)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 267
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=80.33 E-value=1.9 Score=42.72 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=16.7
Q ss_pred CCCCcEEEEccCCCchHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~ 128 (643)
..+.-++++||||||||+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 44667899999999999875
No 268
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=80.31 E-value=0.95 Score=46.18 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=17.0
Q ss_pred CCcEEEEccCCCchHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i 132 (643)
+.-++|+||||||||..+...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHH
Confidence 3457889999999998875543
No 269
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=80.26 E-value=1.8 Score=46.43 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=42.9
Q ss_pred HHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 97 ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
.++.++.++ .++.-++|.|++|+|||..++..+......|..|++++.- .-..|+..++..
T Consensus 186 ~LD~~lgGl---~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE-ms~~ql~~R~~~ 246 (444)
T 3bgw_A 186 ELDRMTYGY---KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIV 246 (444)
T ss_dssp HHHHHHSSB---CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS-SCTTHHHHHHHH
T ss_pred HHHhhcCCC---CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC-CCHHHHHHHHHH
Confidence 455565544 3456789999999999999988888877778888888643 234455555443
No 270
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=80.22 E-value=2.1 Score=51.28 Aligned_cols=85 Identities=21% Similarity=0.330 Sum_probs=63.8
Q ss_pred HHHHhcCCeEEEEecCccChHHHHHHHHhhCC--CC----cEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cccccc
Q 006476 294 KYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP--GV----DIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-IVESGL 366 (643)
Q Consensus 294 ~~~l~~~~qvlvf~~~~~~~e~l~~~L~~~~p--~~----~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~-i~~~Gi 366 (643)
.....++.+++|++|++.-+..+++.++...+ +. ++..+||+.+..++.+..+.+.+ .+|+|+|+ .+..-+
T Consensus 93 ~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l 170 (1054)
T 1gku_B 93 LFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHY 170 (1054)
T ss_dssp HHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCS
T ss_pred HHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHH
Confidence 33345678999999999999999988887653 45 78999999998888777777776 89999996 221111
Q ss_pred c-ccCCCEEEEecCC
Q 006476 367 D-IQNANTIIVQDVQ 380 (643)
Q Consensus 367 D-ip~v~~VI~~d~p 380 (643)
. +.++++||+..++
T Consensus 171 ~~L~~l~~lViDEah 185 (1054)
T 1gku_B 171 RELGHFDFIFVDDVD 185 (1054)
T ss_dssp TTSCCCSEEEESCHH
T ss_pred HHhccCCEEEEeChh
Confidence 1 5678888875543
No 271
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=80.17 E-value=1.8 Score=45.78 Aligned_cols=39 Identities=10% Similarity=0.115 Sum_probs=27.1
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHH------CCCeEEEEecc
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVLAPT 148 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~------~g~~vlil~Pt 148 (643)
.+.-+.|+||+|+|||..+...+..... .+..++++.-.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 4677899999999999887655444332 24567777543
No 272
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=80.03 E-value=0.94 Score=46.80 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
+.-++|+||||+|||..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34689999999999987654
No 273
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=79.42 E-value=3.6 Score=39.45 Aligned_cols=77 Identities=14% Similarity=0.287 Sum_probs=53.6
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccc-----ccc--ccccc
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----VES--GLDIQ 369 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~~p--~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i-----~~~--GiDip 369 (643)
.+.+++|++|++.-+..+++.++.... +..+..++|+.+.......+ +..+|+|+|.- +.. .++..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 467899999999999999999988753 47899999997654433322 46799999951 222 35667
Q ss_pred CCCEEEEecCC
Q 006476 370 NANTIIVQDVQ 380 (643)
Q Consensus 370 ~v~~VI~~d~p 380 (643)
++++||+..+.
T Consensus 171 ~~~~lViDEah 181 (236)
T 2pl3_A 171 DLQMLVLDEAD 181 (236)
T ss_dssp TCCEEEETTHH
T ss_pred cccEEEEeChH
Confidence 78788765443
No 274
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=79.40 E-value=9.6 Score=37.10 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=18.3
Q ss_pred CCCCCcEEEEccCCCchHHHHHH
Q 006476 108 RETPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 108 ~~~~~d~li~a~TGsGKT~~~l~ 130 (643)
...++.++++|++|||||+.+-.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHH
Confidence 34466789999999999988744
No 275
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=79.40 E-value=2.7 Score=40.51 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=50.4
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-----cccc-cccccC
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVES-GLDIQN 370 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~~p--~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~-----i~~~-GiDip~ 370 (643)
.+.+++|++|++.-+..+++.++.... +..+..++|+.... .....+..+..+|+|+|+ .+.+ .++..+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 346899999999999999999887653 56788888886533 233445567789999994 3333 366777
Q ss_pred CCEEEEecCC
Q 006476 371 ANTIIVQDVQ 380 (643)
Q Consensus 371 v~~VI~~d~p 380 (643)
+++||...+.
T Consensus 174 ~~~lViDEah 183 (237)
T 3bor_A 174 IKMFVLDEAD 183 (237)
T ss_dssp CCEEEEESHH
T ss_pred CcEEEECCch
Confidence 8888876544
No 276
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=79.34 E-value=1.6 Score=45.34 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=17.6
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
.+..+++.||+|+|||.++-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 357899999999999987643
No 277
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=79.34 E-value=2.2 Score=41.55 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=17.3
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
.+..+++.||+|+|||..+-.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~ 58 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKA 58 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 356799999999999987643
No 278
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=79.31 E-value=2.6 Score=40.25 Aligned_cols=78 Identities=10% Similarity=0.188 Sum_probs=53.0
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhC-CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-----c-ccccccccCC
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQAF-PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----I-VESGLDIQNA 371 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~~-p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~-----i-~~~GiDip~v 371 (643)
.+.+++|++|+++-++.+++.++... .+..+..++|+.+...+... +. ...+|+|+|+ . ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 56789999999999999999888763 57789999998765443332 22 3489999995 1 2235678888
Q ss_pred CEEEEecCC
Q 006476 372 NTIIVQDVQ 380 (643)
Q Consensus 372 ~~VI~~d~p 380 (643)
++||+..+.
T Consensus 169 ~~lViDEah 177 (228)
T 3iuy_A 169 TYLVIDEAD 177 (228)
T ss_dssp CEEEECCHH
T ss_pred eEEEEECHH
Confidence 888875544
No 279
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.24 E-value=2.9 Score=44.63 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=18.7
Q ss_pred CCCCcEEEEccCCCchHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
..++.+|+.||+|+|||..+-..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAi 226 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAV 226 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHH
Confidence 45778999999999999876433
No 280
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=79.10 E-value=6 Score=41.46 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=16.9
Q ss_pred CCCCcEEEEccCCCchHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~ 128 (643)
....++++.|++|+|||.++
T Consensus 158 ~~~~~vli~Ge~GtGK~~lA 177 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVA 177 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEecCCCcCHHHHH
Confidence 34577899999999999866
No 281
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=78.53 E-value=0.94 Score=40.87 Aligned_cols=20 Identities=40% Similarity=0.306 Sum_probs=16.3
Q ss_pred CcEEEEccCCCchHHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~ 131 (643)
+-++++|++|||||+++-..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 45789999999999987443
No 282
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=78.13 E-value=1 Score=41.18 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
++-++++|++|||||.++-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 46789999999999988743
No 283
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=78.12 E-value=2 Score=47.10 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchHHHH
Q 006476 111 PMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~ 128 (643)
+..++++||||||||+..
T Consensus 260 g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTL 277 (511)
T ss_dssp TCCEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 577999999999999764
No 284
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=78.10 E-value=4.2 Score=45.63 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=54.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.++|+.-+..+++.+.+. ++++..++|. ++...++.+++|+.+|+|+|. .+...+++. +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTd-v~~rGiDi~-v~~V 422 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTD-ISEMGANFR-AGRV 422 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTT----THHHHTTHHHHSCCSEEEECG-GGGTTCCCC-CSEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHc-----CCcEEEEChH----HHHHHHHhhcCCCcEEEEECc-HHHcCcccC-ceEE
Confidence 4678999999999999999988864 6789999873 556678888999999999996 444445553 6655
Q ss_pred E
Q 006476 218 V 218 (643)
Q Consensus 218 V 218 (643)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 285
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=78.06 E-value=2.7 Score=43.38 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=41.7
Q ss_pred HHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 98 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 98 i~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
++.+..++ ..+.-+++.|++|+|||..++..+......+..|+|+..- .-..|+..++..
T Consensus 36 LD~~~gGl---~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE-ms~~ql~~Rlls 95 (338)
T 4a1f_A 36 LDNYTSGF---NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE-MSAEQLALRALS 95 (338)
T ss_dssp HHHHHCSB---CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS-SCHHHHHHHHHH
T ss_pred HHHHhcCC---CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC-CCHHHHHHHHHH
Confidence 44444433 2356689999999999999888877777788889888753 334555555544
No 286
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=77.92 E-value=2.2 Score=43.65 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=26.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
+.-+.++|++|+|||+.+...+......+++++++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456788999999999987554444445677777763
No 287
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=77.57 E-value=1.4 Score=44.27 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=17.2
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
.+.-++++|++|||||+.+-.
T Consensus 32 ~~~livl~G~sGsGKSTla~~ 52 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSA 52 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456789999999999988643
No 288
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=77.52 E-value=2 Score=43.25 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=22.4
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
.+..+++.||+|+|||..+-..+-.. +..++.+.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~ 68 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMS 68 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEe
Confidence 45678999999999998764333222 44444443
No 289
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=77.24 E-value=1.4 Score=40.56 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=18.1
Q ss_pred CCcEEEEccCCCchHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i 132 (643)
+..++++|++|||||.++-..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999875543
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=77.14 E-value=3.2 Score=38.08 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=23.9
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHH
Q 006476 113 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 151 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~L 151 (643)
-++++|+.|||||+++-..+-..-..|..+.++ |+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~-~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII-NYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE-EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE-ECChH
Confidence 478999999999998754433332234445555 54433
No 291
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=76.69 E-value=1.3 Score=42.13 Aligned_cols=20 Identities=50% Similarity=0.758 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
++-+++.||||+|||..++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~ 53 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALE 53 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 46689999999999977654
No 292
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=76.67 E-value=1.3 Score=41.16 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=18.1
Q ss_pred CCCCcEEEEccCCCchHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~ 130 (643)
.+++.++++|++|||||.++-.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEM 29 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 3467899999999999988743
No 293
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=76.47 E-value=2.8 Score=42.50 Aligned_cols=37 Identities=27% Similarity=0.222 Sum_probs=24.5
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
.+.-+.++||+|+|||+..-..+......++++++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4667889999999999886433332333456666653
No 294
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=76.36 E-value=12 Score=36.56 Aligned_cols=78 Identities=14% Similarity=0.292 Sum_probs=57.0
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-----ccc--cccccc
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVE--SGLDIQ 369 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~~p--~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~-----i~~--~GiDip 369 (643)
.+.+++|++|++.-++.+++.++.... +..+..++|+......... +..+ .+|+|+|+ .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 467899999999999999999988653 4678889998876544333 3334 89999994 222 246788
Q ss_pred CCCEEEEecCC
Q 006476 370 NANTIIVQDVQ 380 (643)
Q Consensus 370 ~v~~VI~~d~p 380 (643)
++.+||+..+.
T Consensus 201 ~l~~lViDEah 211 (262)
T 3ly5_A 201 NLQCLVIDEAD 211 (262)
T ss_dssp TCCEEEECSHH
T ss_pred cCCEEEEcChH
Confidence 88888875443
No 295
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.35 E-value=3.4 Score=44.43 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=18.6
Q ss_pred CCCCcEEEEccCCCchHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~ 130 (643)
..++.+|+.||+|+|||+.+-.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkA 262 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARA 262 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHH
Confidence 4578999999999999987643
No 296
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=76.19 E-value=3 Score=41.67 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=31.5
Q ss_pred HHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHC-CCeEEEEec
Q 006476 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAP 147 (643)
Q Consensus 97 ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~-g~~vlil~P 147 (643)
++..+.-.+ ..+.-+++.|++|+|||..+...+...... |..++++..
T Consensus 24 ~Ld~i~~~l---~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 24 GINDKTLGA---RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp THHHHHCSB---CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred HHHHHhcCC---CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 344444333 346778899999999998876555544444 657777653
No 297
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=76.16 E-value=1.6 Score=41.38 Aligned_cols=25 Identities=28% Similarity=0.161 Sum_probs=19.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCV 135 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~ 135 (643)
.|-.++.|+.|||||..+...+...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4678999999999999876554443
No 298
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=76.04 E-value=1.6 Score=40.90 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=18.1
Q ss_pred CCcEEEEccCCCchHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i 132 (643)
++.++++|++|||||+++-..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 5678999999999999875443
No 299
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=75.99 E-value=17 Score=40.80 Aligned_cols=97 Identities=11% Similarity=0.038 Sum_probs=68.2
Q ss_pred CCCchHHHHHHHHHHHH--HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCce-
Q 006476 120 VGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN- 196 (643)
Q Consensus 120 TGsGKT~~~l~~i~~~~--~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~d- 196 (643)
..+||..+. ..++..+ ..+.+++|.+.++..+..+...+... ++.+..++|..+..++...++...+|...
T Consensus 396 ~~s~K~~~l-~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~-----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 469 (644)
T 1z3i_X 396 QLSGKMLVL-DYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR-----RYLYVRLDGTMSIKKRAKIVERFNNPSSPE 469 (644)
T ss_dssp GGSHHHHHH-HHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH-----TCCEEEECSSCCHHHHHHHHHHHHSTTCCC
T ss_pred ccChHHHHH-HHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC-----CCCEEEEeCCCCHHHHHHHHHHhcCCCCCc
Confidence 458887553 2233333 35789999999999888877777654 68899999999999999999999988654
Q ss_pred -EEEechHhhhcccccCccceEEeecc
Q 006476 197 -IIVGTHSLLGSRVVYNNLGLLVVDEE 222 (643)
Q Consensus 197 -IiI~T~~~L~~~~~~~~l~llViDEa 222 (643)
+++.+.......+++...+.||+=+.
T Consensus 470 ~v~L~st~a~g~Glnl~~a~~Vi~~d~ 496 (644)
T 1z3i_X 470 FIFMLSSKAGGCGLNLIGANRLVMFDP 496 (644)
T ss_dssp CEEEEEGGGSCTTCCCTTEEEEEECSC
T ss_pred EEEEEecccccCCcccccCCEEEEECC
Confidence 44444455555566666666665443
No 300
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=75.71 E-value=2.5 Score=40.70 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=24.4
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEe
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLA 146 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~ 146 (643)
.+.-+.+.||+|+|||+.+-..+...+ ..+..++++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 467789999999999987654442222 3444555554
No 301
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=75.42 E-value=4.8 Score=39.20 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=55.9
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-----ccc--ccccccC
Q 006476 300 GGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVE--SGLDIQN 370 (643)
Q Consensus 300 ~~qvlvf~~~~~~~e~l~~~L~~~~p--~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~-----i~~--~GiDip~ 370 (643)
+.+++|++|++.-+..+++.++.... +.++..++|+.+...+...+ .+..+|+|+|+ .+. .++++.+
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 45799999999888888887776532 67899999998865544333 24689999995 222 3567888
Q ss_pred CCEEEEecCC
Q 006476 371 ANTIIVQDVQ 380 (643)
Q Consensus 371 v~~VI~~d~p 380 (643)
+++||...+.
T Consensus 187 ~~~lViDEah 196 (249)
T 3ber_A 187 LKYLVMDEAD 196 (249)
T ss_dssp CCEEEECSHH
T ss_pred cCEEEEcChh
Confidence 8888875544
No 302
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=75.38 E-value=2.7 Score=43.87 Aligned_cols=19 Identities=42% Similarity=0.471 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCchHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l 129 (643)
...+++.|++|+||+.++-
T Consensus 152 ~~~vli~GesGtGKe~lAr 170 (368)
T 3dzd_A 152 KAPVLITGESGTGKEIVAR 170 (368)
T ss_dssp CSCEEEECCTTSSHHHHHH
T ss_pred chhheEEeCCCchHHHHHH
Confidence 5679999999999997763
No 303
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=75.22 E-value=1.9 Score=46.25 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=28.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
+..++++|++|+|||..+...+......|++++++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 457889999999999987666555555678887775
No 304
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=75.18 E-value=3.7 Score=42.50 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=17.8
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
.+..+++.||+|+|||..+-.
T Consensus 116 ~~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 467899999999999987643
No 305
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=75.08 E-value=1.9 Score=40.92 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=17.1
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
.+.-++++||+|+|||..+-.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~ 27 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREA 27 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHH
Confidence 466788999999999987643
No 306
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=75.03 E-value=1.5 Score=44.63 Aligned_cols=33 Identities=21% Similarity=0.067 Sum_probs=22.0
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l 129 (643)
|.+++..+...+.. +.++++.||+|+|||..+-
T Consensus 32 ~~~~~~~l~~~l~~---~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 32 QKYMINRLLIGICT---GGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CHHHHHHHHHHHHH---TCCEEEESCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHc---CCeEEEECCCCCcHHHHHH
Confidence 34444444443322 4689999999999997764
No 307
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=74.90 E-value=2.5 Score=44.19 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=16.7
Q ss_pred CCCCcEEEEccCCCchHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~ 128 (643)
..+..++++||||||||+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34667899999999999875
No 308
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=74.84 E-value=3.8 Score=37.79 Aligned_cols=34 Identities=18% Similarity=0.117 Sum_probs=22.7
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 113 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
-+.++|+.|||||......+-.....|.++.++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4678999999999876443333334566666655
No 309
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=74.82 E-value=1.8 Score=41.23 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=18.9
Q ss_pred CCCcEEEEccCCCchHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i 132 (643)
+++.+++.|+.|||||+++-..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999875443
No 310
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=74.78 E-value=1.6 Score=44.66 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=16.5
Q ss_pred CcEEEEccCCCchHHHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i 132 (643)
.-++|+||||||||..+...+
T Consensus 4 ~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHH
Confidence 457889999999998875543
No 311
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=74.69 E-value=5.5 Score=38.59 Aligned_cols=78 Identities=9% Similarity=0.093 Sum_probs=55.3
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhC--CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccc-----c-cccccccC
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQAF--PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----V-ESGLDIQN 370 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~~--p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i-----~-~~GiDip~ 370 (643)
.+.+++|++|+++-+..+++.++... .+..+..++|+.+.......+ ....+|+|+|.- + ...+++.+
T Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~ 174 (253)
T 1wrb_A 99 AYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEF 174 (253)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhh
Confidence 34689999999998888888887653 246788899988754433222 346799999962 2 22357788
Q ss_pred CCEEEEecCC
Q 006476 371 ANTIIVQDVQ 380 (643)
Q Consensus 371 v~~VI~~d~p 380 (643)
+++||...+.
T Consensus 175 ~~~lViDEah 184 (253)
T 1wrb_A 175 CKYIVLDEAD 184 (253)
T ss_dssp CCEEEEETHH
T ss_pred CCEEEEeCHH
Confidence 8888876554
No 312
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=74.48 E-value=2.6 Score=40.34 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=21.8
Q ss_pred HHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHH
Q 006476 95 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 95 ~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~ 130 (643)
..++..+++. -++...+++.||.|+|||..+..
T Consensus 45 ~~~l~~~~~~---iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 45 LGALKSFLKG---TPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp HHHHHHHHHT---CTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHHHHHhc---CCcccEEEEECCCCCCHHHHHHH
Confidence 3444444442 23345689999999999987743
No 313
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=74.46 E-value=1.5 Score=40.44 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=17.9
Q ss_pred CCcEEEEccCCCchHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i 132 (643)
++-++++|+.|||||+++-..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999874433
No 314
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=74.29 E-value=3.2 Score=40.79 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=22.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEE
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil 145 (643)
++-++++|+.|||||..+-...-.....|..++++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~ 38 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL 38 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 46789999999999998754333222245554444
No 315
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=74.29 E-value=1.6 Score=42.92 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=14.8
Q ss_pred cEEEEccCCCchHHHHHH
Q 006476 113 DRLICGDVGFGKTEVALR 130 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~ 130 (643)
-++++|++|||||..+-.
T Consensus 3 li~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 368999999999987643
No 316
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=74.27 E-value=2 Score=39.69 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
+.-++++||+|+|||+.+-.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45688999999999987633
No 317
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=74.16 E-value=1.8 Score=41.49 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=17.7
Q ss_pred CCCcEEEEccCCCchHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~ 131 (643)
+++.++++|++|||||+++-..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHH
Confidence 3578999999999999987443
No 318
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=74.12 E-value=1.7 Score=40.76 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.0
Q ss_pred CCCCcEEEEccCCCchHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
..++.++++|+.|||||+++-..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 45678999999999999987543
No 319
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=74.12 E-value=11 Score=43.56 Aligned_cols=100 Identities=20% Similarity=0.193 Sum_probs=0.0
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 188 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~ 188 (643)
..++.+|+.||.|+|||+.+-..+-.. +...+.+... +.++.+. +.+.......+.
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~f~~v~~~------------~l~s~~v---------Gese~~vr~lF~ 564 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGP------------ELLTMWF---------GESEANVREIFD 564 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTT---TCEEEECCHH------------HHHTTTC---------SSCHHHHHHHHH
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHh---CCceEEeccc------------hhhcccc---------chHHHHHHHHHH
Q ss_pred HHhcCCceEEEechHhhhcccccCccceEEeeccc------------------ccchhHHHHHHhcCCCceEEEeccCCC
Q 006476 189 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQ------------------RFGVKQKEKIASFKISVDVLTLSATPI 250 (643)
Q Consensus 189 ~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah------------------~~g~~~~~~l~~~~~~~~vl~lSATp~ 250 (643)
..+...+.| |+|||+| +.-......+..+.....++.+-||-.
T Consensus 565 ~Ar~~~P~I-------------------ifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~ 625 (806)
T 3cf2_A 565 KARQAAPCV-------------------LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 625 (806)
T ss_dssp HHHTTCSEE-------------------EECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CC
T ss_pred HHHHcCCce-------------------eechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCC
Q ss_pred h
Q 006476 251 P 251 (643)
Q Consensus 251 ~ 251 (643)
|
T Consensus 626 p 626 (806)
T 3cf2_A 626 P 626 (806)
T ss_dssp S
T ss_pred c
No 320
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=73.82 E-value=1.6 Score=47.13 Aligned_cols=70 Identities=10% Similarity=0.154 Sum_probs=51.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+++++|.+|++.-+..+++.+.+. ++++..+++. ++...++.+++|+.+|+|+|. .+...+++.+ ++|
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~-----g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~-v~~~GiDip~-~~V 257 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRA-----GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTD-ISEMGANFGA-SRV 257 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHT-----TCCEEEESTT----CCCCCGGGSSSCCCSEEEESS-CC---CCCSC-SEE
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhc-----CCcEEecCHH----HHHHHHhhccCCCceEEEECC-hHHhCeecCC-CEE
Confidence 3678999999999999999988763 6789999884 344456777889999999994 3444556666 554
Q ss_pred E
Q 006476 218 V 218 (643)
Q Consensus 218 V 218 (643)
|
T Consensus 258 I 258 (459)
T 2z83_A 258 I 258 (459)
T ss_dssp E
T ss_pred E
Confidence 4
No 321
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.78 E-value=4.1 Score=43.36 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=18.7
Q ss_pred CCCCcEEEEccCCCchHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
..++.+|+.||+|+|||+.+-..
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAi 236 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAV 236 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHH
Confidence 45788999999999999876433
No 322
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=73.78 E-value=1.6 Score=42.61 Aligned_cols=19 Identities=42% Similarity=0.543 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCchHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l 129 (643)
+..+++.||+|+|||..+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4679999999999998764
No 323
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=73.58 E-value=2.2 Score=40.67 Aligned_cols=23 Identities=30% Similarity=0.173 Sum_probs=18.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
|.+++.||+||||++++-..+-+
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999998655443
No 324
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=73.45 E-value=1.7 Score=40.55 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l 129 (643)
.++-+.++|++|||||+.+-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36778999999999998763
No 325
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=73.37 E-value=1.7 Score=40.86 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=17.6
Q ss_pred CCCCcEEEEccCCCchHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~ 130 (643)
..+.-++++|+.|||||+.+-.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~ 48 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHG 48 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 4467889999999999988643
No 326
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=73.35 E-value=1.5 Score=41.52 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=16.5
Q ss_pred CcEEEEccCCCchHHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~ 131 (643)
|.+++.|+.|||||+++-..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 45789999999999987543
No 327
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=73.33 E-value=3.9 Score=38.24 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=18.3
Q ss_pred CCCCcEEEEccCCCchHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
..+.-+.+.|+.|||||+++-..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~L 45 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACAL 45 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 44677889999999999887433
No 328
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=73.33 E-value=1.5 Score=40.42 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=17.5
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~ 131 (643)
++-++++|+.|||||+++-..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 567899999999999987443
No 329
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=73.27 E-value=1.6 Score=40.31 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=17.1
Q ss_pred CCCCcEEEEccCCCchHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l 129 (643)
..+.-++++|+.|||||+.+-
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 346778999999999998763
No 330
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=73.27 E-value=3.5 Score=41.76 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=24.4
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
.+.-+.++||+|+|||+..-..+-.....++++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3556789999999999886433322223566666654
No 331
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=73.09 E-value=1.5 Score=39.97 Aligned_cols=19 Identities=32% Similarity=0.165 Sum_probs=15.8
Q ss_pred CcEEEEccCCCchHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~ 130 (643)
+-++++|+.|||||+++-.
T Consensus 3 ~~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHH
Confidence 4578999999999988743
No 332
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=72.98 E-value=4 Score=37.26 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=17.0
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l 129 (643)
+++.+++.|+.|||||+++-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46778999999999998863
No 333
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=72.96 E-value=1.7 Score=39.41 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCchHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l 129 (643)
++.+.++|+.|||||+++-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4678999999999998863
No 334
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=72.72 E-value=1.6 Score=41.39 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=16.4
Q ss_pred CcEEEEccCCCchHHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~ 131 (643)
|.+++.|+.|||||+++-..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 45789999999999987543
No 335
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=72.67 E-value=1.9 Score=47.05 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l 129 (643)
+.++++.||+|+|||..+-
T Consensus 41 ~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp TCEEEEECCSSSSHHHHHH
T ss_pred CCeeEeecCchHHHHHHHH
Confidence 5789999999999997763
No 336
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=72.61 E-value=1.8 Score=44.40 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.3
Q ss_pred CcEEEEccCCCchHHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~ 131 (643)
+.++|+||||||||..+...
T Consensus 6 ~~i~i~GptGsGKTtla~~L 25 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMAL 25 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36889999999999877543
No 337
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=72.60 E-value=6 Score=39.12 Aligned_cols=25 Identities=20% Similarity=0.124 Sum_probs=20.0
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
.+.-+++.|++|+|||..+...+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3677899999999999987665553
No 338
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=72.56 E-value=2.2 Score=42.56 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=17.4
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
.+..+++.||+|+|||..+-.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARA 73 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHH
Confidence 357899999999999987643
No 339
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=72.50 E-value=3.2 Score=43.12 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchHHHH
Q 006476 111 PMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~ 128 (643)
+..++++||||||||+..
T Consensus 123 ~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457899999999999774
No 340
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=72.30 E-value=1.7 Score=39.19 Aligned_cols=18 Identities=22% Similarity=0.060 Sum_probs=15.4
Q ss_pred cEEEEccCCCchHHHHHH
Q 006476 113 DRLICGDVGFGKTEVALR 130 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~ 130 (643)
.++++|+.|||||+++-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999998744
No 341
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=72.08 E-value=4 Score=43.78 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=17.6
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
.+..+|+.||+|+|||..+-.
T Consensus 62 ~~~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHHH
Confidence 357899999999999988743
No 342
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=71.90 E-value=2.6 Score=38.61 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=17.5
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~ 131 (643)
+..++++|++|||||.++-..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHH
Confidence 567999999999999887543
No 343
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=71.80 E-value=3.1 Score=39.37 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=23.9
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHH-HCCCeEEEEe
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLA 146 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~-~~g~~vlil~ 146 (643)
..++-++++|+.|||||.++-...-..- ..|..++++-
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 3467889999999999988743322221 2354455543
No 344
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=71.77 E-value=5 Score=37.54 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=22.7
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEE
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 143 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vl 143 (643)
+++-++++|+.|||||+++-..+-..-..+..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~ 41 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE 41 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 3678999999999999987544332222344443
No 345
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=71.52 E-value=2.5 Score=39.80 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=17.4
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
.++-++++|++|||||+.+-.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~ 31 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKK 31 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHH
Confidence 367889999999999987643
No 346
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=71.47 E-value=3.3 Score=44.74 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=26.1
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHH
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
-|...+..+..-+. +....++++.||+|+|||.++-..
T Consensus 184 Gr~~~i~~l~~~l~-r~~~~~~LL~G~pG~GKT~la~~l 221 (468)
T 3pxg_A 184 GRSKEIQRVIEVLS-RRTKNNPVLIGEPGVGKTAIAEGL 221 (468)
T ss_dssp CCHHHHHHHHHHHH-CSSSCEEEEESCTTTTTHHHHHHH
T ss_pred CcHHHHHHHHHHHh-ccCCCCeEEECCCCCCHHHHHHHH
Confidence 35555555554442 345678999999999999887443
No 347
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=71.32 E-value=2.5 Score=40.22 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=18.8
Q ss_pred CCCcEEEEccCCCchHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i 132 (643)
.++.+++.|+.|||||+++-..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999875443
No 348
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=71.10 E-value=1.9 Score=39.57 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=17.6
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~ 131 (643)
++.++++|+.|||||+++-..
T Consensus 4 g~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 567899999999999987543
No 349
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=70.89 E-value=10 Score=45.14 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=62.2
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcC-------------------CC----------------CceEEEEeCCCChHH
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSK-------------------YP----------------DIKVGLLSRFQSKAE 182 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~-------------------~~----------------~i~v~~l~g~~~~~~ 182 (643)
.+.+++|.++++.-+.+.+..+.. .+- +. ...++.++|+.+..+
T Consensus 342 ~~~~~IVF~~sr~~~e~la~~L~~-~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~e 420 (1010)
T 2xgj_A 342 KYNPVIVFSFSKRDCEELALKMSK-LDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPIL 420 (1010)
T ss_dssp TCCSEEEEESSHHHHHHHHHTTTT-SCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHh-CCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHH
Confidence 345899999999988887776643 100 00 012889999999999
Q ss_pred HHHHHHHHhcCCceEEEechHhhhcccccCccceEEeeccccc
Q 006476 183 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRF 225 (643)
Q Consensus 183 ~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah~~ 225 (643)
+......+.+|.++|+|+|. .+...+++.+..+ ||+-..+|
T Consensus 421 R~~ve~~F~~G~ikVLVAT~-~la~GIDiP~~~v-VI~~~~kf 461 (1010)
T 2xgj_A 421 KEVIEILFQEGFLKVLFATE-TFSIGLNMPAKTV-VFTSVRKW 461 (1010)
T ss_dssp HHHHHHHHHTTCCSEEEEEG-GGGGSTTCCBSEE-EESCSEEE
T ss_pred HHHHHHHHhcCCCcEEEEeh-HhhccCCCCCceE-EEeCCccc
Confidence 99999999999999999994 4555677777766 55544443
No 350
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=70.76 E-value=1.8 Score=39.93 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=17.0
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
++-++++|++|||||+++-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 56789999999999998744
No 351
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=70.72 E-value=2.9 Score=45.46 Aligned_cols=51 Identities=8% Similarity=-0.019 Sum_probs=37.0
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHC-CCeEEEEeccHHHHHHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~-g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
.+.-++|.|++|+|||..++..+...... |..|+++.-- .-..|+..++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E-~s~~~l~~r~~~ 292 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE-ESVEETAEDLIG 292 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS-SCHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHH
Confidence 46678999999999999988887777665 7788887643 224466555543
No 352
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=70.72 E-value=9.7 Score=42.07 Aligned_cols=86 Identities=14% Similarity=0.029 Sum_probs=61.2
Q ss_pred HCCCeEEEEeccHHHHHHHHHHHHHHhcC---CCCceEEEEeCCCChHHHHHHHHHHhcCCc--eEEEechHhhhccccc
Q 006476 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSK---YPDIKVGLLSRFQSKAEKEEHLDMIKHGHL--NIIVGTHSLLGSRVVY 211 (643)
Q Consensus 137 ~~g~~vlil~Pt~~La~Q~~~~~~~~~~~---~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~--dIiI~T~~~L~~~~~~ 211 (643)
..+.+++|.++++.-|..+++.+.+.... ..+-.+..++|..+ .++...++.+++|+. .+|+.|...+...+++
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 34579999999999999999998764321 11123667777543 347788899998764 4455555666667888
Q ss_pred CccceEEeeccc
Q 006476 212 NNLGLLVVDEEQ 223 (643)
Q Consensus 212 ~~l~llViDEah 223 (643)
.++++||++..-
T Consensus 516 p~v~~Vi~~~~~ 527 (590)
T 3h1t_A 516 PTCKNVVLARVV 527 (590)
T ss_dssp TTEEEEEEESCC
T ss_pred hheeEEEEEecC
Confidence 999999987664
No 353
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=70.35 E-value=4.8 Score=37.71 Aligned_cols=36 Identities=22% Similarity=0.075 Sum_probs=22.2
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEE
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil 145 (643)
.+.-+.+.|++|||||+.+-...-..-..+..+.++
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 355678899999999988643322222235555544
No 354
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=70.22 E-value=2 Score=38.68 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=16.3
Q ss_pred CcEEEEccCCCchHHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~ 131 (643)
|.+++.|+.|||||+++-..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 45789999999999987443
No 355
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=70.20 E-value=2.4 Score=39.71 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
++-++++|+.|||||+++-.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45789999999999988744
No 356
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=70.08 E-value=2 Score=40.39 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchHHHH
Q 006476 111 PMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~ 128 (643)
++-+.++||+|+|||+..
T Consensus 4 g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp -CCEEEECCTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567899999999999875
No 357
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=70.07 E-value=2.3 Score=43.96 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=15.7
Q ss_pred cEEEEccCCCchHHHHHHH
Q 006476 113 DRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~~ 131 (643)
-++|+||||||||..+...
T Consensus 9 lI~I~GptgSGKTtla~~L 27 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEV 27 (340)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHH
Confidence 5789999999999877543
No 358
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=70.05 E-value=2.3 Score=39.62 Aligned_cols=21 Identities=19% Similarity=0.018 Sum_probs=17.8
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
+++-++++|+.|||||+++-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 367899999999999998744
No 359
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=69.92 E-value=2.7 Score=42.88 Aligned_cols=20 Identities=30% Similarity=0.262 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
++.+++.||+|+|||..+-.
T Consensus 45 ~~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHH
Confidence 47899999999999987643
No 360
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=69.82 E-value=2.2 Score=38.90 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
++.++++|+.|||||+++-.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 56788999999999988643
No 361
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=69.68 E-value=7.9 Score=46.90 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=43.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHC-C-----------CeEEEEeccHHHHHHHHHHHHHHhcC
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVVSA-G-----------KQAMVLAPTIVLAKQHFDVVSERFSK 165 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~~~-g-----------~~vlil~Pt~~La~Q~~~~~~~~~~~ 165 (643)
...+|.|.-|||||.+...-++..+.. | .++|+|+=|+.-|.++.+++.+++..
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~~ 82 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHE 82 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHHH
Confidence 456999999999999876656666542 2 38999999999999999999887643
No 362
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=69.59 E-value=4.6 Score=42.03 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=23.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
+.-+.++|++|+|||+..-..+-.....++++++..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 456789999999999886433332233466666654
No 363
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=69.54 E-value=4.1 Score=41.03 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCchHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~ 128 (643)
++.-+.|+|++|||||+.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp SCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556778999999999886
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=69.37 E-value=5.5 Score=36.50 Aligned_cols=32 Identities=22% Similarity=0.042 Sum_probs=20.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHCCCeEEE
Q 006476 113 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 144 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~~i~~~~~~g~~vli 144 (643)
-++++|+.|||||+++-..+-..-..|..++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46899999999999874433322223544443
No 365
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=69.35 E-value=3 Score=38.52 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=17.7
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~ 131 (643)
++-++++|+.|||||+++-..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 567899999999999987443
No 366
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=69.31 E-value=4.6 Score=38.18 Aligned_cols=76 Identities=9% Similarity=0.060 Sum_probs=49.1
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccc------ccccccccCC
Q 006476 300 GGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI------VESGLDIQNA 371 (643)
Q Consensus 300 ~~qvlvf~~~~~~~e~l~~~L~~~~p--~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i------~~~GiDip~v 371 (643)
+.+++|++|++.-++.+++.++.... +..+..++|+.+..+.... + ...+|+|+|.- ....++..++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--RDAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--CCCCEEEECHHHHHHHHHhCCcchhhC
Confidence 46899999999998999988887643 6788999998765443322 2 23789999962 1234567778
Q ss_pred CEEEEecCC
Q 006476 372 NTIIVQDVQ 380 (643)
Q Consensus 372 ~~VI~~d~p 380 (643)
.+||...+.
T Consensus 157 ~~iViDEah 165 (224)
T 1qde_A 157 KMFILDEAD 165 (224)
T ss_dssp CEEEEETHH
T ss_pred cEEEEcChh
Confidence 888875544
No 367
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=69.20 E-value=3.1 Score=38.76 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l 129 (643)
+.-+.+.||+|||||+.+-
T Consensus 7 g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHH
Confidence 5667899999999998763
No 368
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=68.80 E-value=3.9 Score=49.49 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=34.3
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHC---CCeEEEEeccHHHHHHHHHHHHHHh
Q 006476 114 RLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAKQHFDVVSERF 163 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~~i~~~~~~---g~~vlil~Pt~~La~Q~~~~~~~~~ 163 (643)
.+|.|..|||||.+.+.-+...+.. +.+++++||.. +.-++.+++...+
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q-~TFt~~~rl~~~l 55 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQ-MTFLMEYELAKTP 55 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGG-GHHHHHHHHTCCS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCc-ccHHHHHHHHHhh
Confidence 4889999999999987666555543 46899999976 3444444444433
No 369
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=68.64 E-value=2.6 Score=39.38 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=24.5
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHH
Q 006476 114 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 151 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~L 151 (643)
++|.|++|||||.-+...+.. +..++++......
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCC
Confidence 589999999999887654432 5678888775443
No 370
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=68.63 E-value=3.1 Score=43.30 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=17.4
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
.+..+++.||+|+|||..+-.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHH
Confidence 356799999999999987643
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=68.34 E-value=5.9 Score=36.43 Aligned_cols=30 Identities=20% Similarity=0.128 Sum_probs=19.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHCCCeEE
Q 006476 114 RLICGDVGFGKTEVALRAIFCVVSAGKQAM 143 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~~i~~~~~~g~~vl 143 (643)
+++.|+.|||||+++-...-..-..|..++
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 688999999999997544333223355554
No 372
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=68.23 E-value=2.5 Score=38.83 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=16.7
Q ss_pred CcEEEEccCCCchHHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~ 131 (643)
+.++++|+.|||||+++-..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 45899999999999987443
No 373
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=68.22 E-value=3.9 Score=46.97 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=27.0
Q ss_pred HHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHH
Q 006476 93 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 93 ~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~ 131 (643)
-|...+..+..-+. ...+.++|+.||+|+|||.++-..
T Consensus 184 G~~~~i~~l~~~l~-~~~~~~vLL~G~pGtGKT~la~~l 221 (758)
T 3pxi_A 184 GRSKEIQRVIEVLS-RRTKNNPVLIGEPGVGKTAIAEGL 221 (758)
T ss_dssp CCHHHHHHHHHHHH-CSSSCEEEEESCTTTTTHHHHHHH
T ss_pred CchHHHHHHHHHHh-CCCCCCeEEECCCCCCHHHHHHHH
Confidence 35566666555442 455678999999999999887443
No 374
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=68.20 E-value=2.8 Score=40.80 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=19.7
Q ss_pred CCCCcEEEEccCCCchHHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i 132 (643)
.+++.+++.|+.|||||+++-..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 357889999999999999875543
No 375
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=68.01 E-value=6.4 Score=36.76 Aligned_cols=23 Identities=13% Similarity=-0.080 Sum_probs=18.5
Q ss_pred CCCcEEEEccCCCchHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i 132 (643)
+++-++++|+.|||||+++-..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 36778999999999999875433
No 376
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=67.80 E-value=9.6 Score=35.73 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.4
Q ss_pred CCCCcEEEEccCCCchHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~ 128 (643)
..+.-+.|.||+|||||+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34667789999999999875
No 377
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=67.74 E-value=9.8 Score=44.12 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=43.4
Q ss_pred HCCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEech
Q 006476 137 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 202 (643)
Q Consensus 137 ~~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~ 202 (643)
..|..+||.+.|++-+..+.+.+.+. |+++.++++.....+..-.....+.| .|+|+|.
T Consensus 458 ~~gqpvLVft~Sie~sE~Ls~~L~~~-----Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATn 516 (922)
T 1nkt_A 458 AKGQPVLIGTTSVERSEYLSRQFTKR-----RIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATN 516 (922)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHHT-----TCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEET
T ss_pred hcCCcEEEEECCHHHHHHHHHHHHHC-----CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecc
Confidence 45778999999999999988888764 78899999975443333233333344 7999995
No 378
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=67.72 E-value=4.8 Score=38.75 Aligned_cols=79 Identities=15% Similarity=0.267 Sum_probs=53.1
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-----cccc---cccc
Q 006476 299 RGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVES---GLDI 368 (643)
Q Consensus 299 ~~~qvlvf~~~~~~~e~l~~~L~~~~p--~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~-----i~~~---GiDi 368 (643)
.+.+++|++|+++-+..+++.++.... +..+..++|+..... .......+..+|+|+|+ .+.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 345899999999999999999988754 566777776532211 11122345679999994 2222 4778
Q ss_pred cCCCEEEEecCC
Q 006476 369 QNANTIIVQDVQ 380 (643)
Q Consensus 369 p~v~~VI~~d~p 380 (643)
.++.+||+..+.
T Consensus 174 ~~~~~lViDEah 185 (245)
T 3dkp_A 174 ASVEWLVVDESD 185 (245)
T ss_dssp TTCCEEEESSHH
T ss_pred ccCcEEEEeChH
Confidence 888888875544
No 379
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=67.42 E-value=2.8 Score=39.87 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=18.6
Q ss_pred CCCcEEEEccCCCchHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i 132 (643)
+++.+++.|+.|||||+++-..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999875443
No 380
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=67.40 E-value=4.2 Score=51.52 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=38.1
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 156 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~ 156 (643)
+++.+++++|++|+|||..+...+...+..|..++++.- .++..+.+
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT-TSCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEc-cccHHHHH
Confidence 457899999999999999999988889888999998864 34444444
No 381
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=67.34 E-value=12 Score=37.66 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=25.5
Q ss_pred CCcEEEEcc-CCCchHHHHHHHHHHHHHCCCeEEEE
Q 006476 111 PMDRLICGD-VGFGKTEVALRAIFCVVSAGKQAMVL 145 (643)
Q Consensus 111 ~~d~li~a~-TGsGKT~~~l~~i~~~~~~g~~vlil 145 (643)
++-+.+.++ .|.|||.++...+......|++|+++
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 344555554 69999999877666666678888887
No 382
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=67.20 E-value=2.6 Score=39.07 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=17.4
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~ 131 (643)
++-++++|+.|||||+++-..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 467899999999999987443
No 383
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=67.08 E-value=11 Score=38.83 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=27.6
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
+...+.++|++|+|||..+...+......|.+++++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 4457889999999999887665555555677777765
No 384
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=66.96 E-value=4 Score=40.63 Aligned_cols=18 Identities=44% Similarity=0.665 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchHHHH
Q 006476 111 PMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~ 128 (643)
+..+++.||.|+|||..+
T Consensus 44 ~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 345999999999999775
No 385
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=66.89 E-value=2.7 Score=39.29 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
++-++++|+.|||||+++-.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~ 34 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEK 34 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688999999999988743
No 386
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=66.82 E-value=3.6 Score=39.57 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=18.9
Q ss_pred CCCcEEEEccCCCchHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i 132 (643)
.++.+++.|+.|||||.++-..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999875544
No 387
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=66.80 E-value=2.7 Score=38.87 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.9
Q ss_pred cEEEEccCCCchHHHH
Q 006476 113 DRLICGDVGFGKTEVA 128 (643)
Q Consensus 113 d~li~a~TGsGKT~~~ 128 (643)
-+.++||+|+|||+..
T Consensus 3 ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 3 PIVISGPSGTGKSTLL 18 (186)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999875
No 388
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=66.75 E-value=4.7 Score=50.32 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=34.1
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEecc
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt 148 (643)
+.+..++++|++|+|||..++..+...+..|..++++.-.
T Consensus 32 ~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te 71 (1706)
T 3cmw_A 32 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEec
Confidence 3478899999999999999988888888888888888643
No 389
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=66.74 E-value=3.2 Score=39.31 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=16.8
Q ss_pred CcEEEEccCCCchHHHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i 132 (643)
|.+++.|+.|||||+++-..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 457999999999999875433
No 390
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=66.66 E-value=3.4 Score=43.70 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=15.9
Q ss_pred cEEEEccCCCchHHHHHHHH
Q 006476 113 DRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~~i 132 (643)
-++|+||||+|||..+...+
T Consensus 4 ~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHH
Confidence 46889999999998775443
No 391
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=66.34 E-value=2 Score=42.13 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
+..+++.||+|+|||..+-.
T Consensus 44 ~~~vll~G~~GtGKT~la~~ 63 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKA 63 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHH
Confidence 56689999999999987643
No 392
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=66.07 E-value=9.5 Score=45.83 Aligned_cols=80 Identities=10% Similarity=-0.007 Sum_probs=58.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCC----------------------------------CceEEEEeCCCChHHH
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYP----------------------------------DIKVGLLSRFQSKAEK 183 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~----------------------------------~i~v~~l~g~~~~~~~ 183 (643)
.+.+++|.++++.-+.+.+..+...--..+ ...|+.++|+.+...+
T Consensus 440 ~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R 519 (1108)
T 3l9o_A 440 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILK 519 (1108)
T ss_dssp TCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHH
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHH
Confidence 356899999999988888776543100000 0118999999999999
Q ss_pred HHHHHHHhcCCceEEEechHhhhcccccCccceEE
Q 006476 184 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 218 (643)
Q Consensus 184 ~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llV 218 (643)
........+|.++|+|+|.- +...+++.++.+||
T Consensus 520 ~~v~~~F~~G~ikVLVAT~v-la~GIDiP~v~~VI 553 (1108)
T 3l9o_A 520 EVIEILFQEGFLKVLFATET-FSIGLNMPAKTVVF 553 (1108)
T ss_dssp HHHHHHHHHTCCCEEEEESC-CCSCCCC--CEEEE
T ss_pred HHHHHHHhCCCCeEEEECcH-HhcCCCCCCceEEE
Confidence 99999999999999999953 44456777888865
No 393
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=65.98 E-value=2.8 Score=40.81 Aligned_cols=19 Identities=42% Similarity=0.642 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l 129 (643)
+..+++.||+|+|||..+-
T Consensus 49 ~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3459999999999997753
No 394
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=65.95 E-value=3.8 Score=38.83 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=16.9
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
.++-++++||+|+|||...-.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~ 38 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNA 38 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHH
Confidence 456788999999999987533
No 395
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=65.90 E-value=3.7 Score=37.63 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=17.0
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~ 131 (643)
++-++++|+.|||||+++-..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 356889999999999987443
No 396
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=65.84 E-value=3.9 Score=43.78 Aligned_cols=20 Identities=50% Similarity=0.762 Sum_probs=17.1
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l 129 (643)
.+.++++.||+|+|||..+-
T Consensus 49 ~~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHH
Confidence 35789999999999998763
No 397
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=65.78 E-value=2.8 Score=39.27 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=14.1
Q ss_pred cEEEEccCCCchHHHH
Q 006476 113 DRLICGDVGFGKTEVA 128 (643)
Q Consensus 113 d~li~a~TGsGKT~~~ 128 (643)
-++++||+|+|||...
T Consensus 3 pIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLL 18 (186)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999875
No 398
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=65.64 E-value=2 Score=39.29 Aligned_cols=20 Identities=35% Similarity=0.318 Sum_probs=13.1
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
++-++++|+.|||||+++-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56789999999999998744
No 399
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=65.47 E-value=6.1 Score=40.24 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=28.0
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 113 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
-.+..+..|.|||.++...+......|++|+++-.
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 50 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARSGKKTLVIST 50 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 34667899999999988777777778999888753
No 400
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=65.29 E-value=3.2 Score=39.42 Aligned_cols=20 Identities=25% Similarity=0.160 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
++.+.+.|++|||||+++-.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999988743
No 401
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=65.22 E-value=2.1 Score=43.72 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l 129 (643)
+..+++.||+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4569999999999998764
No 402
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=65.06 E-value=7.1 Score=36.88 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=25.3
Q ss_pred EEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 115 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 115 li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
+....+|.|||.++...+......|++|+++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 344468999999987777666678999998654
No 403
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=64.64 E-value=3.1 Score=37.58 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=16.5
Q ss_pred CcEEEEccCCCchHHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~ 131 (643)
+.+++.|+.|||||.++-..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 45899999999999987443
No 404
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=64.61 E-value=2.6 Score=38.59 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l 129 (643)
+.-+.++||+|||||+.+-
T Consensus 9 gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 5667899999999997764
No 405
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=64.52 E-value=6.6 Score=42.63 Aligned_cols=39 Identities=28% Similarity=0.316 Sum_probs=26.1
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEE-ecc
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL-APT 148 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil-~Pt 148 (643)
.+.-+.++|++|+|||+..-..+......++++++. ..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 355678999999999988644333333456777776 443
No 406
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=64.33 E-value=6.6 Score=38.83 Aligned_cols=52 Identities=4% Similarity=-0.003 Sum_probs=37.4
Q ss_pred CCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHHHHH
Q 006476 109 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 161 (643)
Q Consensus 109 ~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~~~~~ 161 (643)
+++...++.|++|+|||..++..+...+.+|-++++++-. +-..|+.+++..
T Consensus 19 ~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~-e~~~~l~~~~~~ 70 (260)
T 3bs4_A 19 KHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSIS-YPLQLIIRILSR 70 (260)
T ss_dssp TTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECS-SCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEe-CCHHHHHHHHHH
Confidence 3466778888999999977777777888889888887653 334455555543
No 407
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=64.19 E-value=3.9 Score=42.55 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCchHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~ 128 (643)
.+..++++||||||||+..
T Consensus 174 ~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp TTCCEEEEESSSSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 3678999999999999764
No 408
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=64.14 E-value=15 Score=36.30 Aligned_cols=52 Identities=15% Similarity=0.336 Sum_probs=31.3
Q ss_pred HHHHHHHhHHhhcc--CCCCC-cEEEEcc-CCCchHHHHHHHHHHHHHCCCeEEEE
Q 006476 94 QKKAFLDVERDLTE--RETPM-DRLICGD-VGFGKTEVALRAIFCVVSAGKQAMVL 145 (643)
Q Consensus 94 Q~~ai~~i~~~~~~--~~~~~-d~li~a~-TGsGKT~~~l~~i~~~~~~g~~vlil 145 (643)
-.+++..+...+.- ...++ -+.+.++ .|.|||.++...+......|++|+++
T Consensus 62 ~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 62 ISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp HHHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 34555554433321 12233 3445544 68999999877666666778888876
No 409
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=63.99 E-value=8 Score=35.66 Aligned_cols=19 Identities=21% Similarity=0.069 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~ 130 (643)
.-++++|++|+|||...-.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~ 25 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKK 25 (174)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHH
Confidence 3468899999999976533
No 410
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=63.97 E-value=4 Score=37.84 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=17.3
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
+++.+.|.|++|||||+++-.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 456788999999999988744
No 411
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=63.96 E-value=6.3 Score=40.31 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=28.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
.-.+..|..|.|||.++...+......|++|+++-
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44677899999999998777777777888998874
No 412
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=63.87 E-value=7.7 Score=38.49 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l 129 (643)
.+.+++.||.|+|||..+.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3458999999999998775
No 413
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=63.81 E-value=3.3 Score=48.35 Aligned_cols=19 Identities=42% Similarity=0.487 Sum_probs=16.0
Q ss_pred CcEEEEccCCCchHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~ 130 (643)
..+++.||||+|||.++-.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~ 607 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKT 607 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3789999999999988643
No 414
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=63.80 E-value=4.6 Score=38.76 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=25.5
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHCCCeEEEE
Q 006476 114 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil 145 (643)
+.+++.-|.|||.++...+......|++|+++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 55688999999999877776666678888776
No 415
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=63.66 E-value=4.1 Score=37.02 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=16.5
Q ss_pred cEEEEccCCCchHHHHHHHH
Q 006476 113 DRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~~i 132 (643)
.++++|+.|||||+++-..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999874443
No 416
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=63.64 E-value=8.3 Score=35.81 Aligned_cols=21 Identities=24% Similarity=0.031 Sum_probs=17.5
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~ 131 (643)
++-++++|+.|||||+++-..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 567899999999999987443
No 417
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=63.31 E-value=3.2 Score=39.03 Aligned_cols=19 Identities=37% Similarity=0.438 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCchHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~ 128 (643)
.+.-+.+.|++|||||+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3556789999999999876
No 418
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=63.28 E-value=4.1 Score=37.72 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=15.7
Q ss_pred cEEEEccCCCchHHHHHHH
Q 006476 113 DRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~~ 131 (643)
.+++.|+.|||||+++-..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEI 20 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 4789999999999887443
No 419
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=63.19 E-value=3.8 Score=38.78 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=52.0
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCC------CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-----cccc-ccc
Q 006476 300 GGQVFYVLPRIKGLEEPMDFLQQAFP------GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVES-GLD 367 (643)
Q Consensus 300 ~~qvlvf~~~~~~~e~l~~~L~~~~p------~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~-----i~~~-GiD 367 (643)
+.+++|++|++.-++.+++.++.... +..+..++|+.+.....+ .+ .+..+|+|+|+ .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 46899999999988888888776542 568888999875432211 11 24578999995 2222 356
Q ss_pred ccCCCEEEEecCC
Q 006476 368 IQNANTIIVQDVQ 380 (643)
Q Consensus 368 ip~v~~VI~~d~p 380 (643)
..++++||+..+.
T Consensus 148 ~~~~~~lViDEah 160 (219)
T 1q0u_A 148 VHTAHILVVDEAD 160 (219)
T ss_dssp GGGCCEEEECSHH
T ss_pred cCcceEEEEcCch
Confidence 7778887765443
No 420
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=62.99 E-value=2 Score=44.09 Aligned_cols=34 Identities=15% Similarity=0.016 Sum_probs=23.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
+.-.++.||+|+|||..+...+.. .|.+++++.-
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 445699999999999888766554 3445554443
No 421
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=62.72 E-value=3.8 Score=39.16 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~ 128 (643)
.+.-+.++||+|+|||+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3667889999999999875
No 422
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=62.47 E-value=5.1 Score=38.51 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=18.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIF 133 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~ 133 (643)
++-+++.||+||||++++-..+-
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 55678899999999998855443
No 423
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=62.14 E-value=4.6 Score=36.39 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=17.5
Q ss_pred CcEEEEccCCCchHHHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i 132 (643)
.++++.|+.|||||+++-..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 578999999999999975443
No 424
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=61.89 E-value=7.5 Score=36.91 Aligned_cols=31 Identities=29% Similarity=0.199 Sum_probs=22.7
Q ss_pred CHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHH
Q 006476 91 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 91 tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~ 128 (643)
+..|..++..+.. +.-+.+.||.|||||+.+
T Consensus 9 ~~g~~~~l~~i~~-------Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDT-------NTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHH-------CSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccC-------CCEEEEECCCCCCHHHHH
Confidence 3446666666532 566889999999999876
No 425
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=61.78 E-value=3.5 Score=38.00 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=14.8
Q ss_pred cEEEEccCCCchHHHHHH
Q 006476 113 DRLICGDVGFGKTEVALR 130 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~ 130 (643)
-++++||.|+|||+.+-.
T Consensus 4 ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 468899999999987643
No 426
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=61.72 E-value=7.7 Score=39.99 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=27.0
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 114 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
.+..+..|.|||.++...+......|++|+++-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456788999999998777777777899988876
No 427
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=61.53 E-value=3.7 Score=42.17 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchHHHH
Q 006476 111 PMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~ 128 (643)
+..++++||||||||+..
T Consensus 171 g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp TCCEEEEESTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 578999999999999753
No 428
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=61.31 E-value=8.5 Score=42.67 Aligned_cols=36 Identities=22% Similarity=0.438 Sum_probs=29.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
.+-+++.|..|.|||.++...+......|++|+++-
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 456788899999999998877777777899998875
No 429
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=61.16 E-value=19 Score=42.78 Aligned_cols=82 Identities=7% Similarity=0.008 Sum_probs=59.8
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcC-----------------------------------CCCceEEEEeCCCChHHH
Q 006476 139 GKQAMVLAPTIVLAKQHFDVVSERFSK-----------------------------------YPDIKVGLLSRFQSKAEK 183 (643)
Q Consensus 139 g~~vlil~Pt~~La~Q~~~~~~~~~~~-----------------------------------~~~i~v~~l~g~~~~~~~ 183 (643)
..+++|.++++.-+.+.+..+.+ .+- .....+..++++.+..++
T Consensus 336 ~~~~IVF~~sr~~~e~la~~L~~-~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R 414 (997)
T 4a4z_A 336 LLPMVVFVFSKKRCEEYADWLEG-INFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVK 414 (997)
T ss_dssp CCSEEEECSCHHHHHHHHHTTTT-CCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHH
Confidence 46899999999988887766532 100 001258899999999999
Q ss_pred HHHHHHHhcCCceEEEechHhhhcccccCccceEEeeccc
Q 006476 184 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQ 223 (643)
Q Consensus 184 ~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDEah 223 (643)
......+.+|..+|+|+|.- +...+++.+ ..+|+....
T Consensus 415 ~~v~~~F~~G~~kVLvAT~~-~a~GIDiP~-~~VVi~~~~ 452 (997)
T 4a4z_A 415 ELIEILFSKGFIKVLFATET-FAMGLNLPT-RTVIFSSIR 452 (997)
T ss_dssp HHHHHHHHTTCCSEEEECTH-HHHSCCCCC-SEEEESCSE
T ss_pred HHHHHHHHCCCCcEEEEchH-hhCCCCCCC-ceEEEeccc
Confidence 99999999999999999964 444567777 455554333
No 430
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=61.05 E-value=4.1 Score=39.51 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
++-+.++|+.|||||+.+-.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQR 46 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 57789999999999987633
No 431
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=60.83 E-value=6 Score=40.15 Aligned_cols=46 Identities=13% Similarity=0.042 Sum_probs=27.7
Q ss_pred HHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 96 ~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
.++..+-- .-+.+.-+.|+||+|+|||..+-.. .... .+.++..+|
T Consensus 114 ~vL~~vsl---~i~~Ge~vaIvGpsGsGKSTLl~lL-~gl~--~G~I~~~v~ 159 (305)
T 2v9p_A 114 NALKLWLK---GIPKKNCLAFIGPPNTGKSMLCNSL-IHFL--GGSVLSFAN 159 (305)
T ss_dssp HHHHHHHH---TCTTCSEEEEECSSSSSHHHHHHHH-HHHH--TCEEECGGG
T ss_pred hhhccceE---EecCCCEEEEECCCCCcHHHHHHHH-hhhc--CceEEEEec
Confidence 34544433 2345777889999999999775332 2222 455654444
No 432
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=60.62 E-value=3.9 Score=38.17 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=14.6
Q ss_pred cEEEEccCCCchHHHHH
Q 006476 113 DRLICGDVGFGKTEVAL 129 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l 129 (643)
.+.+.|+.|||||+++-
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 57899999999998863
No 433
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=60.51 E-value=5.3 Score=35.72 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=13.7
Q ss_pred cEEEEccCCCchHHHH
Q 006476 113 DRLICGDVGFGKTEVA 128 (643)
Q Consensus 113 d~li~a~TGsGKT~~~ 128 (643)
-.+|.||+|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4689999999999873
No 434
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=60.30 E-value=5.1 Score=37.53 Aligned_cols=19 Identities=32% Similarity=0.191 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l 129 (643)
+.-+.+.|++|||||+++-
T Consensus 21 ~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4567899999999998763
No 435
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=60.29 E-value=5.2 Score=42.81 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=17.0
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l 129 (643)
.+..+|+.||+|+|||..+-
T Consensus 166 ~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35789999999999998764
No 436
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=60.02 E-value=8.8 Score=41.92 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=28.1
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEecc
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt 148 (643)
.+.-+++.|++|+|||+.+...+-.....|..++++++.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 466788999999999988765554444456667777654
No 437
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=59.95 E-value=5 Score=38.30 Aligned_cols=21 Identities=33% Similarity=0.306 Sum_probs=16.6
Q ss_pred CcEEEEccCCCchHHHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i 132 (643)
|.+++.|+.|||||+++-..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999875443
No 438
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=59.92 E-value=4.5 Score=38.85 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~ 128 (643)
.+.-+.++||.|+|||+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3677889999999999775
No 439
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=59.88 E-value=9.4 Score=36.37 Aligned_cols=35 Identities=14% Similarity=0.014 Sum_probs=23.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEE
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil 145 (643)
++-+++.|+.|+|||+++-...-..-..|..++.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 67788999999999998755433333345555433
No 440
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=59.61 E-value=5.8 Score=40.53 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
+..+++.||+|+|||..+-.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 46789999999999987633
No 441
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=59.53 E-value=13 Score=41.83 Aligned_cols=67 Identities=12% Similarity=0.034 Sum_probs=49.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHHHHhcCCceEEEechHhhhcccccCccceE
Q 006476 138 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 217 (643)
Q Consensus 138 ~g~~vlil~Pt~~La~Q~~~~~~~~~~~~~~i~v~~l~g~~~~~~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~ll 217 (643)
.+.+++|.+||+.-+.++++.+.+. ++++..++|..+..+ ..++..+|+|+|. .+...+++. +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~-----g~~v~~lHG~l~q~e-------r~~~~~~VLVATd-VaerGIDId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL-----GINAVAYYRGLDVSV-------IPTIGDVVVVATD-ALMTGYTGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECTTSCGGG-------SCSSSCEEEEECT-THHHHCCCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC-----CCcEEEecCCCCHHH-------HHhCCCcEEEECC-hHHccCCCC-CcEE
Confidence 3568999999999999998888753 689999999877654 2345569999995 333344553 7766
Q ss_pred E
Q 006476 218 V 218 (643)
Q Consensus 218 V 218 (643)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 442
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=59.53 E-value=12 Score=37.57 Aligned_cols=74 Identities=14% Similarity=0.098 Sum_probs=53.6
Q ss_pred CCeEEEEecCccChHHHHHHHHhhC---CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccc-----c-c-cccccc
Q 006476 300 GGQVFYVLPRIKGLEEPMDFLQQAF---PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----V-E-SGLDIQ 369 (643)
Q Consensus 300 ~~qvlvf~~~~~~~e~l~~~L~~~~---p~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i-----~-~-~GiDip 369 (643)
+.+++|++|+++-+..+++.++... ++..+...+|+....... ....+|+|||+- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 3579999999998888888777653 567888888876532211 345789999962 2 2 357888
Q ss_pred CCCEEEEecCC
Q 006476 370 NANTIIVQDVQ 380 (643)
Q Consensus 370 ~v~~VI~~d~p 380 (643)
++.++|+..++
T Consensus 235 ~l~~lVlDEad 245 (300)
T 3fmo_B 235 KIKVFVLDEAD 245 (300)
T ss_dssp GCSEEEETTHH
T ss_pred hceEEEEeCHH
Confidence 99999876554
No 443
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=59.31 E-value=9.8 Score=36.92 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=24.6
Q ss_pred EEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 115 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 115 li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
+..+..|.|||.++...+......|++|+++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45678899999998776666666788888873
No 444
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=59.19 E-value=5.5 Score=36.81 Aligned_cols=16 Identities=38% Similarity=0.682 Sum_probs=14.0
Q ss_pred cEEEEccCCCchHHHH
Q 006476 113 DRLICGDVGFGKTEVA 128 (643)
Q Consensus 113 d~li~a~TGsGKT~~~ 128 (643)
.+.+.||.|+|||+..
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999875
No 445
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=59.13 E-value=29 Score=41.20 Aligned_cols=82 Identities=16% Similarity=0.268 Sum_probs=57.8
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhc-------CCCCceEEEEeCCC---------------------ChH---------
Q 006476 139 GKQAMVLAPTIVLAKQHFDVVSERFS-------KYPDIKVGLLSRFQ---------------------SKA--------- 181 (643)
Q Consensus 139 g~~vlil~Pt~~La~Q~~~~~~~~~~-------~~~~i~v~~l~g~~---------------------~~~--------- 181 (643)
+.+++|+|+++.-|...++.|.+... ...++++.++.++. +..
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 46899999999999999999987541 22346665544321 110
Q ss_pred --------------------HHHHHHHHHhcCCceEEEechHhhhcccccCccceEEeec
Q 006476 182 --------------------EKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDE 221 (643)
Q Consensus 182 --------------------~~~~~~~~l~~g~~dIiI~T~~~L~~~~~~~~l~llViDE 221 (643)
.+....+.+++|+++|+|+|.-.+ ..+....+.++.+|=
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~ll-tGfDiP~l~tlylDk 675 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFL-TGFDAPTLNTLFVDK 675 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTS-SSCCCTTEEEEEEES
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHH-hCcCcccccEEEEcc
Confidence 244566778899999999996655 456677888899983
No 446
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=59.04 E-value=4.4 Score=38.33 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
++-+.+.|+.|||||+++-.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~ 23 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANA 23 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 46788999999999988643
No 447
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=58.77 E-value=5.5 Score=39.36 Aligned_cols=18 Identities=44% Similarity=0.719 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchHHHH
Q 006476 111 PMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~ 128 (643)
+..+++.||+|+|||..+
T Consensus 73 ~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcChHHHHH
Confidence 345999999999999775
No 448
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=58.65 E-value=3.7 Score=38.48 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=14.5
Q ss_pred EEEEccCCCchHHHHHH
Q 006476 114 RLICGDVGFGKTEVALR 130 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~ 130 (643)
++++|+.|||||+.+-.
T Consensus 3 I~i~G~~GsGKsTl~~~ 19 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEK 19 (214)
T ss_dssp EEEEEEEEEEHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHH
Confidence 67899999999988744
No 449
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=58.63 E-value=14 Score=48.38 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=35.7
Q ss_pred cCCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHH--HHHHHHHHHCCC-eEEEEecc
Q 006476 85 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA--LRAIFCVVSAGK-QAMVLAPT 148 (643)
Q Consensus 85 ~~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~--l~~i~~~~~~g~-~vlil~Pt 148 (643)
...+.+++.+..-+-.+..-+.. ...++++||||||||.++ +..++..+.... .+.++-|-
T Consensus 900 ~~~l~~~~~~~~K~~ql~e~~~~---r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk 963 (2695)
T 4akg_A 900 RSGFSMSEEFLKKCMQFYYMQKT---QQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTK 963 (2695)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHHH---CSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTT
T ss_pred HcCCcccHHHHHHHHHHHHHHHh---cceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 34457777775555455443322 366999999999999986 233333332222 34455554
No 450
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=58.42 E-value=8.2 Score=37.37 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=26.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
..-+++.|..|+|||..+...+.... .|.+++++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 34578899999999998766555444 677777765
No 451
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=58.33 E-value=8.1 Score=44.27 Aligned_cols=18 Identities=44% Similarity=0.715 Sum_probs=15.8
Q ss_pred cEEEEccCCCchHHHHHH
Q 006476 113 DRLICGDVGFGKTEVALR 130 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~ 130 (643)
.++++||+|+|||..+-.
T Consensus 490 ~~ll~G~~GtGKT~la~~ 507 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQ 507 (758)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 689999999999988743
No 452
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=58.32 E-value=8.8 Score=36.51 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=24.2
Q ss_pred EEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 115 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 115 li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
+..+..|.|||.++...+......|++|+++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 33557799999998777666666788888874
No 453
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=58.24 E-value=21 Score=35.62 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=24.7
Q ss_pred CcEEEEc-cCCCchHHHHHHHHHHHHHCCCeEEEE
Q 006476 112 MDRLICG-DVGFGKTEVALRAIFCVVSAGKQAMVL 145 (643)
Q Consensus 112 ~d~li~a-~TGsGKT~~~l~~i~~~~~~g~~vlil 145 (643)
+-+++.+ ..|.|||.++...+......|++|+++
T Consensus 93 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 93 NVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp CEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 4444444 469999999877766666778888887
No 454
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=57.86 E-value=5.1 Score=37.67 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchHHHH
Q 006476 111 PMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~ 128 (643)
+.-+.+.||+|+|||+.+
T Consensus 20 Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567889999999999875
No 455
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=57.67 E-value=69 Score=34.36 Aligned_cols=35 Identities=20% Similarity=0.070 Sum_probs=24.8
Q ss_pred HHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHH
Q 006476 96 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 134 (643)
Q Consensus 96 ~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~ 134 (643)
++|+.+.. -.+++..++.|+.|+|||..+...+..
T Consensus 140 r~ID~L~p----i~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 140 KVVDLLAP----YIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHHHSC----EETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred hHHHHHhh----hccCCEEEEECCCCCCccHHHHHHHhh
Confidence 57776643 234678999999999999876544433
No 456
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=57.59 E-value=9.1 Score=37.41 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=24.2
Q ss_pred EEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 115 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 115 li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
+..+..|.|||.++...+......|++|+++=
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 33567799999998776666666788888863
No 457
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=57.05 E-value=6.3 Score=40.69 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=30.6
Q ss_pred HHHHhHHhhccCCCCCcEEEEccCCCchHHHHHHHHHHHHH---C---CCeEEEEec
Q 006476 97 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---A---GKQAMVLAP 147 (643)
Q Consensus 97 ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~~i~~~~~---~---g~~vlil~P 147 (643)
.++.++.. .-+.+.-+.++||.|+|||..+...+..... . +..|+++.-
T Consensus 119 ~LD~lL~g--gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 119 SLDKLLGG--GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp HHHHHHTS--SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred HHHHHhcC--CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 45555531 1234667889999999999987665544321 1 256666653
No 458
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=56.50 E-value=4.9 Score=37.59 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=14.5
Q ss_pred cEEEEccCCCchHHHHH
Q 006476 113 DRLICGDVGFGKTEVAL 129 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l 129 (643)
.+.+.|+.|||||+++-
T Consensus 4 ~i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999998863
No 459
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=56.37 E-value=9.9 Score=39.00 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=28.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
..-+++.|.-|.|||.++...+......|++|+++-
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 345677888999999998777776667788888775
No 460
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=56.23 E-value=8.6 Score=35.58 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=23.5
Q ss_pred EccCCCchHHHHHHHHHHHHHCCCeEEEEe
Q 006476 117 CGDVGFGKTEVALRAIFCVVSAGKQAMVLA 146 (643)
Q Consensus 117 ~a~TGsGKT~~~l~~i~~~~~~g~~vlil~ 146 (643)
.+.-|+|||.++...+......|++|+++=
T Consensus 8 s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 356789999998777766667788888874
No 461
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=56.10 E-value=9.8 Score=36.58 Aligned_cols=23 Identities=26% Similarity=0.122 Sum_probs=18.3
Q ss_pred CCCcEEEEccCCCchHHHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i 132 (643)
.++-+++.|+.|||||+++-..+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 46778999999999999874443
No 462
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=55.98 E-value=10 Score=36.66 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=23.4
Q ss_pred EEEccCCCchHHHHHHHHHHHHHCCCeEEEE
Q 006476 115 LICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145 (643)
Q Consensus 115 li~a~TGsGKT~~~l~~i~~~~~~g~~vlil 145 (643)
+..+..|.|||.++...+......|++|+++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 3456779999999877666666678888876
No 463
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=55.92 E-value=14 Score=35.55 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=24.0
Q ss_pred EEEEc-cCCCchHHHHHHHHHHHHHCCCeEEEEec
Q 006476 114 RLICG-DVGFGKTEVALRAIFCVVSAGKQAMVLAP 147 (643)
Q Consensus 114 ~li~a-~TGsGKT~~~l~~i~~~~~~g~~vlil~P 147 (643)
++|.| .||+|||.+....+......|.+|.+.=|
T Consensus 7 i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 7 FFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 44444 58999999976666555667888877544
No 464
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=55.41 E-value=8.1 Score=43.05 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=23.6
Q ss_pred HHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHHH
Q 006476 94 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 94 Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l~ 130 (643)
|..++..+...+. .+..+++.||+|+|||..+-.
T Consensus 46 ~~~~l~~l~~~i~---~g~~vll~Gp~GtGKTtlar~ 79 (604)
T 3k1j_A 46 QEHAVEVIKTAAN---QKRHVLLIGEPGTGKSMLGQA 79 (604)
T ss_dssp CHHHHHHHHHHHH---TTCCEEEECCTTSSHHHHHHH
T ss_pred chhhHhhcccccc---CCCEEEEEeCCCCCHHHHHHH
Confidence 4555555544332 256899999999999987633
No 465
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=54.92 E-value=7.8 Score=39.36 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=24.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEecc
Q 006476 113 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 148 (643)
Q Consensus 113 d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt 148 (643)
-.++.|+.|||||+..- .+.. ...+.+++|+.|.
T Consensus 6 v~~i~G~~GaGKTTll~-~l~~-~~~~~~~aVi~~d 39 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLR-HILN-EQHGYKIAVIENE 39 (318)
T ss_dssp EEEEEESSSSSCHHHHH-HHHH-SCCCCCEEEECSS
T ss_pred EEEEEecCCCCHHHHHH-HHHh-hcCCCcEEEEEec
Confidence 36889999999997642 2222 2357889999985
No 466
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=54.83 E-value=5.1 Score=38.33 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=11.9
Q ss_pred CCcEEEEccCCCchHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l 129 (643)
+.-+.+.||+|||||+++-
T Consensus 27 G~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp CCEEEEECSCC----CHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5667899999999998763
No 467
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=54.58 E-value=12 Score=38.55 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=28.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHH--HCCCeEEEEec
Q 006476 112 MDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLAP 147 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~~i~~~~--~~g~~vlil~P 147 (643)
.-.+..|..|.|||.++...+.... ..|++|+++-.
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~ 56 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIST 56 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 3456678999999999877776666 67888888754
No 468
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=54.48 E-value=5.5 Score=39.68 Aligned_cols=21 Identities=33% Similarity=0.241 Sum_probs=17.2
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~ 131 (643)
++-+.++|+.|||||+++-..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~L 95 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRL 95 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 456899999999999987443
No 469
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=54.27 E-value=13 Score=37.14 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=26.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEE
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil 145 (643)
.+-+.+.+.-|.|||+++...+......|++|+++
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 44556668889999999877766666678888876
No 470
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=54.12 E-value=7.9 Score=37.77 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=17.2
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~ 130 (643)
.+..+.|.|++|||||+++-.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~ 46 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKA 46 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356788999999999988743
No 471
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=53.92 E-value=5.6 Score=38.71 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVAL 129 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l 129 (643)
+.-+.|.|+.|||||+++-
T Consensus 22 ~~iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCA 40 (252)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 4568899999999998874
No 472
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=53.52 E-value=6.8 Score=40.11 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHh----HHhhccCCCCCcEEEEccCCCchHHHH
Q 006476 89 EPTPDQKKAFLDV----ERDLTERETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 89 ~~tp~Q~~ai~~i----~~~~~~~~~~~d~li~a~TGsGKT~~~ 128 (643)
.+..-|.+.+..+ ..+..+ ....-++..|+||||||...
T Consensus 53 ~~~~sQ~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 53 QSSTSQEQVYNDCAKKIVKDVLE-GYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHT-TCCEEEEEECSTTSSHHHHH
T ss_pred CCCCCHHHHHHHHhhhhHHHHhC-CCeEEEEEECCCCCCCceEe
Confidence 4555676665543 222222 23456788999999999775
No 473
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=53.14 E-value=14 Score=38.04 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=28.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH--HCCCeEEEEec
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLAP 147 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~--~~g~~vlil~P 147 (643)
.+-+++.|.-|.|||.++...+.... ..|++|+++--
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~ 56 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIST 56 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 35567788899999999877766666 67888888753
No 474
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=53.01 E-value=14 Score=36.57 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=24.5
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHCCCeEEEE
Q 006476 114 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145 (643)
Q Consensus 114 ~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil 145 (643)
+.+++.-|.|||+++...+......|++|+++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 34567889999999877666666678888775
No 475
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=53.00 E-value=6.1 Score=41.06 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHh----HHhhccCCCCCc--EEEEccCCCchHHHH
Q 006476 89 EPTPDQKKAFLDV----ERDLTERETPMD--RLICGDVGFGKTEVA 128 (643)
Q Consensus 89 ~~tp~Q~~ai~~i----~~~~~~~~~~~d--~li~a~TGsGKT~~~ 128 (643)
.+...|.+.+..+ ..+...+ +.+ ++..|+||||||...
T Consensus 59 ~~~~~Q~~Vy~~~~~plv~~~~~~--G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 59 DDTVDNFTVYENTIKPLIIDLYEN--GCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHHH--CCEEEEEEECCTTSSHHHHH
T ss_pred cCCCCHHHHHHHHhhhhhhhhccC--CceeEEEeeCCCCCCCCEEE
Confidence 5556677666543 2222111 344 688999999999765
No 476
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=52.91 E-value=17 Score=35.23 Aligned_cols=31 Identities=19% Similarity=0.121 Sum_probs=22.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCe
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 141 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~ 141 (643)
++-+++.|+.|||||.++-...-..-..+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 5678999999999999875544333344555
No 477
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=52.76 E-value=7.9 Score=40.41 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHhH----HhhccCCCCCcEEEEccCCCchHHHH
Q 006476 89 EPTPDQKKAFLDVE----RDLTERETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~----~~~~~~~~~~d~li~a~TGsGKT~~~ 128 (643)
.+...|.+.+..+. .+..+ ....-++..|+||||||...
T Consensus 77 ~~~~~Q~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 77 DWNAKQFELYDETFRPLVDSVLQ-GFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp CTTCCHHHHHHHTHHHHHHHHHT-TCCEEEEEEESTTSSHHHHH
T ss_pred CCcCchHHHHHHHHHHHHHHHhC-CCeeeEEeecCCCCCCCEeE
Confidence 55666777665432 22222 23456778999999999764
No 478
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=52.75 E-value=8.2 Score=37.46 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.6
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~ 131 (643)
++.+.+.||+|||||+++-..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~l 29 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGL 29 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 567899999999999887543
No 479
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=52.70 E-value=7.1 Score=40.67 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHhH----HhhccCCCCCcEEEEccCCCchHHHH
Q 006476 89 EPTPDQKKAFLDVE----RDLTERETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~----~~~~~~~~~~d~li~a~TGsGKT~~~ 128 (643)
.+...|.+.+..+. .+... ....-++..|+||||||...
T Consensus 60 ~~~~~Q~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 60 KPNASQEKVYNEAAKSIVTDVLA-GYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHT-TCCEEEEEECSTTSSHHHHH
T ss_pred cCCCCHHHHHHHhhhhHHHHHhC-CCceEEEeecCCCCCCceEE
Confidence 55666776665432 22222 23455788999999999764
No 480
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=52.51 E-value=8.6 Score=37.71 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=17.6
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRA 131 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~ 131 (643)
+..+++.|++|||||+++-..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 568999999999999987443
No 481
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=52.36 E-value=8.2 Score=35.82 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=18.1
Q ss_pred CCcEEEEccCCCchHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAI 132 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i 132 (643)
+.-++++|+.|+|||+.++..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 5678999999999998875543
No 482
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=52.21 E-value=8.3 Score=36.32 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=14.1
Q ss_pred CcEEEEccCCCchHHHH
Q 006476 112 MDRLICGDVGFGKTEVA 128 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~ 128 (643)
.-.+|.||+|+|||.+.
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 34688999999999874
No 483
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=52.08 E-value=12 Score=35.96 Aligned_cols=36 Identities=19% Similarity=0.009 Sum_probs=20.9
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHC----CCeEEEE
Q 006476 110 TPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVL 145 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~l~~i~~~~~~----g~~vlil 145 (643)
+++-+++.|+.|||||+++-...-..-.. |..++++
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 36778999999999999975443322222 6555543
No 484
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=51.86 E-value=8.6 Score=34.97 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.8
Q ss_pred cEEEEccCCCchHHHH
Q 006476 113 DRLICGDVGFGKTEVA 128 (643)
Q Consensus 113 d~li~a~TGsGKT~~~ 128 (643)
-.+|+|++|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5689999999999774
No 485
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=51.74 E-value=6.4 Score=38.55 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCchHHHH
Q 006476 110 TPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 110 ~~~d~li~a~TGsGKT~~~ 128 (643)
+++-+++.|+.|||||+++
T Consensus 23 ~~~~I~ieG~~GsGKST~~ 41 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFV 41 (263)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4677899999999999886
No 486
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=51.68 E-value=6.7 Score=36.52 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=46.9
Q ss_pred CCeEEEEecCccChHH-HHHHHHhhCC-CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccc-----ccc-------c
Q 006476 300 GGQVFYVLPRIKGLEE-PMDFLQQAFP-GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----VES-------G 365 (643)
Q Consensus 300 ~~qvlvf~~~~~~~e~-l~~~L~~~~p-~~~v~~~hg~~~~~~r~~v~~~F~~g~~~ILVaT~i-----~~~-------G 365 (643)
+++++|++|+..-++. +.+.+....+ +..+..++|+.....+...+. +..+|+|+|.- +.. +
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 157 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 157 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------C
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCcccccc
Confidence 6789999999877776 5555655432 578889998864332211111 24789999952 122 2
Q ss_pred ccccCCCEEEEecCCC
Q 006476 366 LDIQNANTIIVQDVQQ 381 (643)
Q Consensus 366 iDip~v~~VI~~d~p~ 381 (643)
+.+.++++||+..+..
T Consensus 158 ~~~~~~~~iIiDEah~ 173 (216)
T 3b6e_A 158 VQLSDFSLIIIDECHH 173 (216)
T ss_dssp CCGGGCSEEEETTC--
T ss_pred cchhcccEEEEECchh
Confidence 5667788888766654
No 487
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=51.54 E-value=7.8 Score=40.07 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHhH----HhhccCCCCCcEEEEccCCCchHHHH
Q 006476 89 EPTPDQKKAFLDVE----RDLTERETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~----~~~~~~~~~~d~li~a~TGsGKT~~~ 128 (643)
.+..-|.+.+..+. .+..+ ....-++..|+||||||...
T Consensus 53 ~~~~tQ~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 53 HGNETTKNVYEEIAAPIIDSAIQ-GYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp CTTSCHHHHHHHTTHHHHHHHHT-TCCEEEEEEESTTSSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc-CCccceeeecCCCCCCCeEE
Confidence 44555666655432 22222 23456788999999999765
No 488
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=51.25 E-value=15 Score=35.79 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=23.9
Q ss_pred EEEccCCCchHHHHHHHHHHHHHCCCeEEEE
Q 006476 115 LICGDVGFGKTEVALRAIFCVVSAGKQAMVL 145 (643)
Q Consensus 115 li~a~TGsGKT~~~l~~i~~~~~~g~~vlil 145 (643)
.+++.-|.|||+++...+......|++|+++
T Consensus 5 ~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 5 AIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 4467889999999877666665678888875
No 489
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=51.23 E-value=6.1 Score=37.06 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=26.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCCeEEEEeccHHHHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 157 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~~vlil~Pt~~La~Q~~~ 157 (643)
.+.+.+.|..|||||+++-...-.. | +.+..+-.++.+.+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l---g---~~vid~D~~~~~~~~ 52 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY---G---AHVVNVDRIGHEVLE 52 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH---C---CEEEEHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---C---CEEEECcHHHHHHHH
Confidence 4567889999999999874433221 3 344566666666554
No 490
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=51.20 E-value=6.2 Score=39.32 Aligned_cols=19 Identities=32% Similarity=0.165 Sum_probs=15.9
Q ss_pred CcEEEEccCCCchHHHHHH
Q 006476 112 MDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~l~ 130 (643)
+-++++|++|||||+++-.
T Consensus 3 ~~I~l~G~~GsGKST~a~~ 21 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWARE 21 (301)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578999999999998744
No 491
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=51.14 E-value=19 Score=47.86 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHhHHhhccCCCCCcEEEEccCCCchHHHHH--HHHHHHHHCCC--eEEEEeccHHHHHHHH
Q 006476 86 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL--RAIFCVVSAGK--QAMVLAPTIVLAKQHF 156 (643)
Q Consensus 86 ~~~~~tp~Q~~ai~~i~~~~~~~~~~~d~li~a~TGsGKT~~~l--~~i~~~~~~g~--~vlil~Pt~~La~Q~~ 156 (643)
..+.++|.|..=+-.+..-+. ....++++||||||||.++= ..++..+ .|. ...++-|--.-..|.|
T Consensus 884 ~~L~~~~~~v~KviQLye~~~---vRhGvmlVGp~gsGKTt~~~~L~~al~~l-~~~~~~~~~iNPKait~~eLy 954 (3245)
T 3vkg_A 884 RHLVTKQEWVEKILQLHQILN---INHGVMMVGPSGGGKTTSWEVYLEAIEQV-DNIKSEAHVMDPKAITKDQLF 954 (3245)
T ss_dssp TTCCCCHHHHHHHHHHHHHHT---TCSEEEEECSSSSSHHHHHHHHHHHHTTT-TTCEEEEEEECTTTSCHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHH---heeeEEEECCCCCCHHHHHHHHHHHHHHh-hCCCceEEEECCCCCchhhhc
Confidence 345677766665555555332 24568999999999998862 2222222 132 3455667544444433
No 492
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=51.08 E-value=19 Score=34.17 Aligned_cols=30 Identities=23% Similarity=0.119 Sum_probs=20.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHCCC
Q 006476 111 PMDRLICGDVGFGKTEVALRAIFCVVSAGK 140 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~~i~~~~~~g~ 140 (643)
++-+++.|+.|||||+++-...-..-..|.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 567889999999999987544333333454
No 493
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=51.03 E-value=8.1 Score=40.11 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=14.2
Q ss_pred CcEEEEccCCCchHHHH
Q 006476 112 MDRLICGDVGFGKTEVA 128 (643)
Q Consensus 112 ~d~li~a~TGsGKT~~~ 128 (643)
.-.+++|+||+|||...
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 44689999999999874
No 494
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=50.63 E-value=7.9 Score=40.22 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHhH----HhhccCCCCCcEEEEccCCCchHHHH
Q 006476 89 EPTPDQKKAFLDVE----RDLTERETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~----~~~~~~~~~~d~li~a~TGsGKT~~~ 128 (643)
.+...|.+.+..+. .+..+ ....-++..|+||||||...
T Consensus 64 ~~~~~Q~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 64 GASTKQIDVYRSVVCPILDEVIM-GYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHT-TCEEEEEEEECTTSSHHHHH
T ss_pred eccCchhHHHHHHHHHhHHHHhC-CCceEEEEeCCCCCCCceEE
Confidence 55666776665433 22222 22345678999999999664
No 495
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=50.52 E-value=30 Score=34.12 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=24.6
Q ss_pred CcEEEEc---cCCCchHHHHHHHHHHHHHCCCeEEEE
Q 006476 112 MDRLICG---DVGFGKTEVALRAIFCVVSAGKQAMVL 145 (643)
Q Consensus 112 ~d~li~a---~TGsGKT~~~l~~i~~~~~~g~~vlil 145 (643)
+-+.+.+ .-|.|||.++...+......|++|+++
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 4455554 789999999876666555678888874
No 496
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=50.50 E-value=7.1 Score=40.30 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHhH----HhhccCCCCCcEEEEccCCCchHHHH
Q 006476 89 EPTPDQKKAFLDVE----RDLTERETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 89 ~~tp~Q~~ai~~i~----~~~~~~~~~~d~li~a~TGsGKT~~~ 128 (643)
.+..-|.+.+..+. .+..+ ....-++..|+||||||...
T Consensus 70 ~~~~sQ~~Vy~~~~~plv~~~l~-G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 70 PATISQDEMYQALILPLVDKLLE-GFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHH-TCCEEEEEESSTTSSHHHHH
T ss_pred CCCCCHHHHHHhhccchhhHhhC-CCceEEEEecCCCCCCCeEE
Confidence 56666777665432 22222 22345688999999999764
No 497
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=50.33 E-value=7.7 Score=36.53 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 006476 111 PMDRLICGDVGFGKTEVALR 130 (643)
Q Consensus 111 ~~d~li~a~TGsGKT~~~l~ 130 (643)
++.+.+.|+.|||||.++-.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~ 22 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKR 22 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 46789999999999988743
No 498
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=50.22 E-value=8.3 Score=39.87 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHh----HHhhccCCCCCcEEEEccCCCchHHHH
Q 006476 89 EPTPDQKKAFLDV----ERDLTERETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 89 ~~tp~Q~~ai~~i----~~~~~~~~~~~d~li~a~TGsGKT~~~ 128 (643)
.+...|.+.+..+ ..+..+ ....-++..|+||||||...
T Consensus 65 ~~~~~Q~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 65 DQTSCNYGIFQASFKPLIDAVLE-GFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp CTTCCHHHHHHHTTHHHHHHHHT-TCCEEEEEECSTTSSHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHHHhC-CCceeEEeecCCCCCCCEEe
Confidence 4555566655432 222222 23456788999999999764
No 499
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=50.04 E-value=8.7 Score=39.89 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=14.1
Q ss_pred cEEEEccCCCchHHHH
Q 006476 113 DRLICGDVGFGKTEVA 128 (643)
Q Consensus 113 d~li~a~TGsGKT~~~ 128 (643)
-.+|+||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5679999999999876
No 500
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=49.95 E-value=8.3 Score=39.97 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHH----hHHhhccCCCCCcEEEEccCCCchHHHH
Q 006476 89 EPTPDQKKAFLD----VERDLTERETPMDRLICGDVGFGKTEVA 128 (643)
Q Consensus 89 ~~tp~Q~~ai~~----i~~~~~~~~~~~d~li~a~TGsGKT~~~ 128 (643)
.+...|.+.+.. +..+..+ ....-++..|+||||||...
T Consensus 56 ~~~~~Q~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 56 DMSCKQSDIFDFSIKPTVDDILN-GYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHTT-TCCEEEEEECSTTSSHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHhC-CCcceEEEECCCCCCcceEe
Confidence 455556666553 2233322 23456778999999999664
Done!