Your job contains 1 sequence.
>006477
MADLENLLLEAAGRTNSAGRNRHSASSSKRRREGSYSGSDSRDDDSDDNRGYGSRKPSGS
QVPLKKRLDPAERDDDQGSQEEGDYDGGASEHEGDSSNESDDDNHGQMTELEREMMIFER
DDKKVDKNLRDKFRSRREERSTRSTKETPPLPSSRSARLAARSADRAAAKDDALNELRAK
RLKQQDPEAHRRLRDASRGGSGSRVLSPVKRKAFTPAGLSSSSQSESESRSHSDDEGSTG
DGGMADSDDDGAPGSGRPTYDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKN
GPIYRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEF
KQWLREVERNSGRMPSKQDVLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAE
KDRLRRELEVAQSRHDEVDMERIKKRLQELEASRDSKVKDAKAIRLAEMNRKNRVENFKN
ASELKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEEVTAEANGDKNGVPGGANGEEG
ATGEVGMAATEAALEAAAGAGKLVDTNAPLDLGTESNMLHDFELDISLNALKKFGGPQGV
LAGFMARKQRIEATVGCQVPENDGRRHALTLTVGDYKRRRGLL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006477
(643 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2205996 - symbol:VIP5 "vernalization independe... 1634 5.2e-168 1
ZFIN|ZDB-GENE-030131-6778 - symbol:rtf1 "Rtf1, Paf1/RNA p... 290 4.8e-25 3
UNIPROTKB|Q92541 - symbol:RTF1 "RNA polymerase-associated... 276 7.9e-24 3
UNIPROTKB|E2RPD2 - symbol:RTF1 "Uncharacterized protein" ... 276 8.1e-24 3
MGI|MGI:1309480 - symbol:Rtf1 "Rtf1, Paf1/RNA polymerase ... 276 8.2e-24 3
WB|WBGene00009103 - symbol:F25B3.6 species:6239 "Caenorha... 264 8.4e-24 3
UNIPROTKB|D4A6Z3 - symbol:Rtf1 "Protein Rtf1" species:101... 276 1.3e-23 3
UNIPROTKB|F1NY87 - symbol:RTF1 "Uncharacterized protein" ... 272 1.4e-23 3
UNIPROTKB|F1SSV6 - symbol:RTF1 "Uncharacterized protein" ... 271 3.0e-23 3
UNIPROTKB|F1N6E9 - symbol:RTF1 "Uncharacterized protein" ... 271 3.3e-23 3
UNIPROTKB|I3LJZ5 - symbol:RTF1 "Uncharacterized protein" ... 271 3.4e-23 3
UNIPROTKB|Q5RAD5 - symbol:RTF1 "RNA polymerase-associated... 276 1.4e-22 3
UNIPROTKB|Q5ZKE3 - symbol:RTF1 "Uncharacterized protein" ... 272 2.8e-22 2
POMBASE|SPBC651.09c - symbol:SPBC651.09c "RNA polymerase ... 254 3.8e-20 2
SGD|S000003213 - symbol:RTF1 "Subunit of RNAPII-associate... 252 1.5e-18 2
FB|FBgn0034722 - symbol:Rtf1 "Rtf1" species:7227 "Drosoph... 257 1.9e-18 3
DICTYBASE|DDB_G0286523 - symbol:DDB_G0286523 species:4468... 247 2.5e-17 2
ASPGD|ASPL0000075787 - symbol:rtfA species:162425 "Emeric... 232 2.9e-16 1
FB|FBgn0051702 - symbol:CG31702 species:7227 "Drosophila ... 182 5.5e-11 1
FB|FBgn0051703 - symbol:CG31703 species:7227 "Drosophila ... 181 7.0e-11 1
UNIPROTKB|H0YKX1 - symbol:RTF1 "RNA polymerase-associated... 136 2.6e-08 1
DICTYBASE|DDB_G0286543 - symbol:DDB_G0286543 "RUN domain-... 128 0.00023 1
FB|FBgn0040356 - symbol:CG12498 species:7227 "Drosophila ... 116 0.00039 1
>TAIR|locus:2205996 [details] [associations]
symbol:VIP5 "vernalization independence 5" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0016570 "histone
modification" evidence=IEA] [GO:0009910 "negative regulation of
flower development" evidence=IMP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=RCA;IMP] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA] [GO:0030244
"cellulose biosynthetic process" evidence=RCA] [GO:0030422
"production of siRNA involved in RNA interference" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0048193 "Golgi vesicle transport"
evidence=RCA] [GO:0048573 "photoperiodism, flowering" evidence=RCA]
[GO:0051276 "chromosome organization" evidence=RCA]
InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126 PROSITE:PS51360
SMART:SM00719 EMBL:CP002684 GO:GO:0005634 GO:GO:0045893
GO:GO:0003677 GO:GO:0006352 GO:GO:0016570 EMBL:AC018908
GO:GO:0009910 KO:K15178 OMA:YPLEGKY IPI:IPI00529121 PIR:A96636
RefSeq:NP_176299.1 UniGene:At.36545 ProteinModelPortal:Q9C950
SMR:Q9C950 STRING:Q9C950 PRIDE:Q9C950 EnsemblPlants:AT1G61040.1
GeneID:842395 KEGG:ath:AT1G61040 TAIR:At1g61040 InParanoid:Q9C950
PhylomeDB:Q9C950 ProtClustDB:CLSN2681831 Genevestigator:Q9C950
Uniprot:Q9C950
Length = 643
Score = 1634 (580.3 bits), Expect = 5.2e-168, P = 5.2e-168
Identities = 345/655 (52%), Positives = 408/655 (62%)
Query: 1 MADLENLLLEAAGRTNSAGRNRHSASSSKXXXXXXXXXXXXXXXXXXXXXXXXXXKPSGS 60
M DLENLLLEAAGRTNSAGR+RH SS + KPSGS
Sbjct: 1 MGDLENLLLEAAGRTNSAGRSRHPPSSRRREGSYSDGSSDSRDDSDEDRGYASR-KPSGS 59
Query: 61 QVPLKKRLDPAERDD----------DQGSQEEGDYDGGAXXXXXXXXXXXXXXXXXQMTE 110
QVPLKKRL+ AER+D D S EGD + MTE
Sbjct: 60 QVPLKKRLE-AEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMTE 118
Query: 111 LEREMMIFERDDKKVDKNLRDKFXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXX 169
+REM++ ER DKK DKN +K
Sbjct: 119 FQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADRAAA 178
Query: 170 XXXXXNELRAKRLKQQDPEAHRRLRDASRGGSGSRVLSPVKRKAFTPAGLXXXXXXXXXX 229
NELRAKR+KQQDP A R+LRDAS+GGSGSR S KRK + L
Sbjct: 179 KDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQSDSDS 238
Query: 230 XXXXXXXXXXXXXXXXXXXXXXXXXXXRPTYDDIKEITIRRSKLAKWFMEPFFEELIVGC 289
PT++D+KE+TIRRSKLAKW MEPFFEELIVGC
Sbjct: 239 RSQSDDEGSNGGMLDSDDDRSDV-----PTFEDVKEVTIRRSKLAKWLMEPFFEELIVGC 293
Query: 290 FVRVGIGRSKNGPIYRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGNESSAARWQMAM 349
FVRVGIGRSK+GPIYRLC V+NVDAT+PD++YKLEN+TT KYLNV WGNE+SAARWQMAM
Sbjct: 294 FVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARWQMAM 353
Query: 350 VSDSPPLEEEFKQWLREVERNSGRMPSKQDVLEKKESIQKINTFVYSAATVKQMLQEKKS 409
+SD PLEEE++QW+REVER +GRMP+KQD+ EKKE+IQ+ N+FVYSA TVKQMLQEKKS
Sbjct: 354 ISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQEKKS 413
Query: 410 ASSRPLNVAAEKDRLRRELEVAQSRHDEVDMERIKKRLQELEASRDSKVKDAKAIRLAEM 469
AS RP+NVAAEKDRLR+ELE+AQS++DE +ERIK ++++L+ASR+ K D KA++LAEM
Sbjct: 414 ASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDASRNKKGVDKKALKLAEM 473
Query: 470 NRKNRVENFKNASELKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEEVTAEANGDKN 529
N+KNR ENFKNASE+K + SLKAGEAGYDPFSRRWTRS NYY K +G++N
Sbjct: 474 NKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGK-----NKGKDGEEN 528
Query: 530 -GVPXXXXXXXXXXXXXXMXXXXXXXXXXXXXXKLVDTNAPLDLGTESNMLHDFELDISL 588
+ KL+DT AP+ G E N LH+FEL +SL
Sbjct: 529 EAAVAAAVETNGADAGAGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLHNFELSLSL 588
Query: 589 NALKKFGGPQGVLAGFMARKQRIEATVGCQVPENDGRRHALTLTVGDYKRRRGLL 643
AL+K+GGPQGV FMARKQ EATVGC+V ENDG+RH LTLTV DYKRRRGLL
Sbjct: 589 TALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 643
>ZFIN|ZDB-GENE-030131-6778 [details] [associations]
symbol:rtf1 "Rtf1, Paf1/RNA polymerase II complex
component, homolog (S. cerevisiae)" species:7955 "Danio rerio"
[GO:0016570 "histone modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0014032 "neural crest cell development"
evidence=IGI;IMP] [GO:0001756 "somitogenesis" evidence=IGI;IMP]
[GO:0036342 "post-anal tail morphogenesis" evidence=IGI]
[GO:0043473 "pigmentation" evidence=IMP] [GO:0007507 "heart
development" evidence=IMP] InterPro:IPR004343 InterPro:IPR018144
Pfam:PF03126 PROSITE:PS51360 SMART:SM00719
ZFIN:ZDB-GENE-030131-6778 GO:GO:0005634 GO:GO:0007507 GO:GO:0003677
GO:GO:0006352 GO:GO:0001756 GO:GO:0016570 GO:GO:0014032
GO:GO:0043473 GO:GO:0036342 GeneTree:ENSGT00390000012493
EMBL:BX284673 IPI:IPI00488636 Ensembl:ENSDART00000015417
ArrayExpress:F1QFQ9 Bgee:F1QFQ9 Uniprot:F1QFQ9
Length = 739
Score = 290 (107.1 bits), Expect = 4.8e-25, Sum P(3) = 4.8e-25
Identities = 73/249 (29%), Positives = 132/249 (53%)
Query: 261 DDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRS 320
D++ I + R KL +W PFF + + GCFVR+GIG S N P+YR+ + +D E +
Sbjct: 381 DELNRIRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNSSNKPVYRVAEI--IDVVETAKI 438
Query: 321 YKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSG-RMPSKQD 379
Y+L + T K L + GN++ R + VS+ E EF +W +E +G ++P+ +
Sbjct: 439 YQLGSTRTNKGLQLRHGNDTRVFR--LEFVSNQEFTESEFMKW-KEAMMIAGMQLPTLDE 495
Query: 380 VLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVD 439
+ +K++SI++ + ++ ++ +++EK P N A +K +L +E +A+ D
Sbjct: 496 INKKEQSIKEAVNYKFNDKDIEDIVKEKDRFRKAPPNYAMKKTQLLKEKAMAEESGDGDK 555
Query: 440 MERIKKRLQELEASRDS----KVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGE 495
+ ++ +L ELE ++ + K+ AI + +N++NR N SE V +
Sbjct: 556 AKTLQDQLNELEERAEALDRQRTKNISAI--SYINQRNRSWNIVE-SEKALVAEGQNSKN 612
Query: 496 AGYDPFSRR 504
DPF+RR
Sbjct: 613 QQMDPFTRR 621
Score = 53 (23.7 bits), Expect = 4.8e-25, Sum P(3) = 4.8e-25
Identities = 24/81 (29%), Positives = 35/81 (43%)
Query: 565 DTNAPL-DLGTESNMLHDFELDISLNALKKFGGPQGVLAGFMARKQRIEATVGCQVPEND 623
D P DL + +HDF++ I L P A+ + + +P D
Sbjct: 675 DVTKPTSDLSEDLFKVHDFDVKIDLQV------PNAE-----AKSLSVSSNA---LPVKD 720
Query: 624 GR-RHALTLTVGDYKRRRGLL 643
G R +L L DYK+RRGL+
Sbjct: 721 GAPRRSLNLE--DYKKRRGLI 739
Score = 51 (23.0 bits), Expect = 4.8e-25, Sum P(3) = 4.8e-25
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 74 DDDQGSQEEGDYDGGAXXXXXXXXXXXXXXXXXQMTELEREMMIFERDDKK 124
D D S++E DG QMTE ERE +F R +K+
Sbjct: 189 DSDSSSEDEVFRDG---YGDDLMGDEEDRARLEQMTEKEREQELFNRIEKR 236
>UNIPROTKB|Q92541 [details] [associations]
symbol:RTF1 "RNA polymerase-associated protein RTF1
homolog" species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0051571 "positive regulation of histone H3-K4
methylation" evidence=IEA] [GO:0080182 "histone H3-K4
trimethylation" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IDA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0019827 "stem cell
maintenance" evidence=IDA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0001711 "endodermal cell fate commitment" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR004343
InterPro:IPR018144 Pfam:PF03126 PROSITE:PS51360 SMART:SM00719
GO:GO:0005730 GO:GO:0016055 GO:GO:0045944 GO:GO:0006352
GO:GO:0000122 GO:GO:0003697 GO:GO:0019827 GO:GO:0051571
GO:GO:0032968 GO:GO:0080182 GO:GO:0016593 GO:GO:0001711
EMBL:AC087721 CTD:23168 eggNOG:COG5296 KO:K15178 ChiTaRS:RTF1
EMBL:D87440 EMBL:BC015052 IPI:IPI00303832 RefSeq:NP_055953.3
UniGene:Hs.511096 PDB:2BZE PDB:2DB9 PDB:3U1U PDBsum:2BZE
PDBsum:2DB9 PDBsum:3U1U ProteinModelPortal:Q92541 SMR:Q92541
IntAct:Q92541 STRING:Q92541 PhosphoSite:Q92541 DMDM:118595726
PaxDb:Q92541 PRIDE:Q92541 Ensembl:ENST00000389629 GeneID:23168
KEGG:hsa:23168 UCSC:uc001zny.3 GeneCards:GC15P041709
H-InvDB:HIX0012153 HGNC:HGNC:28996 HPA:HPA006714 MIM:611633
neXtProt:NX_Q92541 PharmGKB:PA134961778 HOGENOM:HOG000231764
HOVERGEN:HBG057331 InParanoid:Q92541 OMA:CKPTMVS OrthoDB:EOG4X97GV
EvolutionaryTrace:Q92541 GenomeRNAi:23168 NextBio:44567
PMAP-CutDB:Q92541 Bgee:Q92541 CleanEx:HS_RTF1 Genevestigator:Q92541
GermOnline:ENSG00000137815 Uniprot:Q92541
Length = 710
Score = 276 (102.2 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
Identities = 71/249 (28%), Positives = 132/249 (53%)
Query: 261 DDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRS 320
+++ + + R KL +W PFF + + GCFVR+GIG + P+YR+ + V E +
Sbjct: 357 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 414
Query: 321 YKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSG-RMPSKQD 379
Y+L T K L + GN+ R + VS+ E EF +W +E ++G ++P+ +
Sbjct: 415 YQLGGTRTNKGLQLRHGNDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGMQLPTLDE 471
Query: 380 VLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVD 439
+ +K+ SI++ + ++ ++++++EK+ P N A +K +L +E +A+ D+
Sbjct: 472 INKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDK 531
Query: 440 MERIKKRLQELEASRDS----KVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGE 495
++I+ +L ELE ++ + K+ AI + +N++NR N SE V S
Sbjct: 532 AKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVE-SEKALVAESHNMKN 588
Query: 496 AGYDPFSRR 504
DPF+RR
Sbjct: 589 QQMDPFTRR 597
Score = 56 (24.8 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 74 DDDQGSQEEGDYDGGAXXXXXXXXXXXXXXXXXQMTELEREMMIFERDDKK 124
D D S++E +DG QMTE ERE +F R +K+
Sbjct: 168 DSDSSSEDEEFHDG---YGEDLMGDEEDRARLEQMTEKEREQELFNRIEKR 215
Score = 52 (23.4 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 620 PENDGR-RHALTLTVGDYKRRRGLL 643
P DG R +L L DYK+RRGL+
Sbjct: 688 PAKDGAPRRSLNLE--DYKKRRGLI 710
>UNIPROTKB|E2RPD2 [details] [associations]
symbol:RTF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0080182 "histone H3-K4 trimethylation"
evidence=IEA] [GO:0051571 "positive regulation of histone H3-K4
methylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001711 "endodermal
cell fate commitment" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126
PROSITE:PS51360 SMART:SM00719 GO:GO:0005730 GO:GO:0045944
GO:GO:0006352 GO:GO:0000122 GO:GO:0003697 GO:GO:0019827
GO:GO:0051571 GO:GO:0032968 GO:GO:0080182 GO:GO:0016593
GO:GO:0001711 CTD:23168 GeneTree:ENSGT00390000012493 KO:K15178
OMA:CKPTMVS EMBL:AAEX03016077 EMBL:AAEX03016074 EMBL:AAEX03016075
EMBL:AAEX03016076 RefSeq:XP_544630.2 Ensembl:ENSCAFT00000015168
GeneID:487506 KEGG:cfa:487506 NextBio:20861089 Uniprot:E2RPD2
Length = 714
Score = 276 (102.2 bits), Expect = 8.1e-24, Sum P(3) = 8.1e-24
Identities = 71/249 (28%), Positives = 132/249 (53%)
Query: 261 DDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRS 320
+++ + + R KL +W PFF + + GCFVR+GIG + P+YR+ + V E +
Sbjct: 361 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 418
Query: 321 YKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSG-RMPSKQD 379
Y+L T K L + GN+ R + VS+ E EF +W +E ++G ++P+ +
Sbjct: 419 YQLGGTRTNKGLQLRHGNDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGMQLPTLDE 475
Query: 380 VLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVD 439
+ +K+ SI++ + ++ ++++++EK+ P N A +K +L +E +A+ D+
Sbjct: 476 INKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDK 535
Query: 440 MERIKKRLQELEASRDS----KVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGE 495
++I+ +L ELE ++ + K+ AI + +N++NR N SE V S
Sbjct: 536 AKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVE-SEKALVAESHNMKN 592
Query: 496 AGYDPFSRR 504
DPF+RR
Sbjct: 593 QQMDPFTRR 601
Score = 56 (24.8 bits), Expect = 8.1e-24, Sum P(3) = 8.1e-24
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 74 DDDQGSQEEGDYDGGAXXXXXXXXXXXXXXXXXQMTELEREMMIFERDDKK 124
D D S++E +DG QMTE ERE +F R +K+
Sbjct: 172 DSDSSSEDEEFHDG---YGEDLMGDEEDRARLEQMTEKEREQELFNRIEKR 219
Score = 52 (23.4 bits), Expect = 8.1e-24, Sum P(3) = 8.1e-24
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 620 PENDGR-RHALTLTVGDYKRRRGLL 643
P DG R +L L DYK+RRGL+
Sbjct: 692 PAKDGAPRRSLNLE--DYKKRRGLI 714
>MGI|MGI:1309480 [details] [associations]
symbol:Rtf1 "Rtf1, Paf1/RNA polymerase II complex component,
homolog (S. cerevisiae)" species:10090 "Mus musculus" [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0001711 "endodermal cell fate
commitment" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0016570 "histone modification" evidence=IEA]
[GO:0016593 "Cdc73/Paf1 complex" evidence=ISO] [GO:0019827 "stem
cell maintenance" evidence=ISO;IMP] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0051571 "positive regulation of histone H3-K4 methylation"
evidence=IMP] [GO:0080182 "histone H3-K4 trimethylation"
evidence=IMP] InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126
PROSITE:PS51360 SMART:SM00719 MGI:MGI:1309480 GO:GO:0005730
GO:GO:0016055 GO:GO:0045944 GO:GO:0006352 GO:GO:0000122
GO:GO:0003697 GO:GO:0019827 GO:GO:0051571 GO:GO:0032968
GO:GO:0080182 GO:GO:0016593 GO:GO:0001711 EMBL:AL844536 CTD:23168
eggNOG:COG5296 GeneTree:ENSGT00390000012493 KO:K15178 ChiTaRS:RTF1
HOGENOM:HOG000231764 HOVERGEN:HBG057331 OMA:CKPTMVS
OrthoDB:EOG4X97GV EMBL:BC117848 EMBL:BC117849 IPI:IPI00757677
RefSeq:NP_084388.2 UniGene:Mm.33437 ProteinModelPortal:A2AQ19
SMR:A2AQ19 STRING:A2AQ19 PhosphoSite:A2AQ19 PaxDb:A2AQ19
PRIDE:A2AQ19 Ensembl:ENSMUST00000028767 GeneID:76246 KEGG:mmu:76246
UCSC:uc008lue.2 InParanoid:Q08EC5 NextBio:344845 Bgee:A2AQ19
Genevestigator:A2AQ19 Uniprot:A2AQ19
Length = 715
Score = 276 (102.2 bits), Expect = 8.2e-24, Sum P(3) = 8.2e-24
Identities = 71/249 (28%), Positives = 132/249 (53%)
Query: 261 DDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRS 320
+++ + + R KL +W PFF + + GCFVR+GIG + P+YR+ + V E +
Sbjct: 362 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 419
Query: 321 YKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSG-RMPSKQD 379
Y+L T K L + GN+ R + VS+ E EF +W +E ++G ++P+ +
Sbjct: 420 YQLGGTRTNKGLQLRHGNDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGMQLPTLDE 476
Query: 380 VLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVD 439
+ +K+ SI++ + ++ ++++++EK+ P N A +K +L +E +A+ D+
Sbjct: 477 INKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDK 536
Query: 440 MERIKKRLQELEASRDS----KVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGE 495
++I+ +L ELE ++ + K+ AI + +N++NR N SE V S
Sbjct: 537 AKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVE-SEKALVAESHNMRN 593
Query: 496 AGYDPFSRR 504
DPF+RR
Sbjct: 594 QQMDPFTRR 602
Score = 56 (24.8 bits), Expect = 8.2e-24, Sum P(3) = 8.2e-24
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 74 DDDQGSQEEGDYDGGAXXXXXXXXXXXXXXXXXQMTELEREMMIFERDDKK 124
D D S++E +DG QMTE ERE +F R +K+
Sbjct: 173 DSDSSSEDEEFHDG---YGEDLMGDEEDRARLEQMTEKEREQELFNRIEKR 220
Score = 52 (23.4 bits), Expect = 8.2e-24, Sum P(3) = 8.2e-24
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 620 PENDGR-RHALTLTVGDYKRRRGLL 643
P DG R +L L DYK+RRGL+
Sbjct: 693 PAKDGAPRRSLNLE--DYKKRRGLI 715
Score = 37 (18.1 bits), Expect = 7.4e-22, Sum P(3) = 7.4e-22
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 69 DPAERDDDQGSQEEGD 84
D E +DD S E+ D
Sbjct: 319 DDEEEEDDDKSSEKSD 334
>WB|WBGene00009103 [details] [associations]
symbol:F25B3.6 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0016570 "histone modification" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0061199
"striated muscle contraction involved in embryonic body
morphogenesis" evidence=IMP] InterPro:IPR004343 InterPro:IPR018144
Pfam:PF03126 PROSITE:PS51360 SMART:SM00719 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0003677 GO:GO:0040011 GO:GO:0006352
GO:GO:0016570 GO:GO:0040035 GO:GO:0061199
GeneTree:ENSGT00390000012493 KO:K15178 OMA:PTNYAMK EMBL:Z81101
EMBL:Z70752 PIR:T21325 RefSeq:NP_505473.1 ProteinModelPortal:G5EBY0
SMR:G5EBY0 IntAct:G5EBY0 EnsemblMetazoa:F25B3.6 GeneID:179345
KEGG:cel:CELE_F25B3.6 CTD:179345 WormBase:F25B3.6 NextBio:905006
Uniprot:G5EBY0
Length = 613
Score = 264 (98.0 bits), Expect = 8.4e-24, Sum P(3) = 8.4e-24
Identities = 75/247 (30%), Positives = 132/247 (53%)
Query: 262 DIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGR-SKNGPIYRLCMVRNVDATEPDRS 320
+++ + R KL+ PFF+ +VGC+VR+G G+ S +G YR+ + V+ E ++
Sbjct: 257 ELRRARLSRHKLSLMIHAPFFDSTVVGCYVRLGQGQMSGSGSKYRIWKIVGVE--ESNKV 314
Query: 321 YKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSGRMPSKQDV 380
Y+LE + T K + N S ++M VS++ + EF +WL +R+ G +P+ +
Sbjct: 315 YELEGKKTNKIIKCQ--NGGSERPFRMQFVSNADFEQIEFDEWLLACKRH-GNLPTVDIM 371
Query: 381 LEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVDM 440
+KK+ I+K YS V M++EK + P N A K ++ E+AQ R D +
Sbjct: 372 DKKKQDIEKAINHKYSDKEVDLMIKEKSKYQTVPRNFAMTKANWSKQKELAQQRGDIREA 431
Query: 441 ERIKKRLQELEASRDSKVKD-AKAIR-LAEMNRKNRVENFKNASELKRVNTSLKAGEAGY 498
E+I+ ++ E+E D K+ +K+I +A +N +NR K+ + ++ LK E
Sbjct: 432 EQIQTKIDEIERQADELEKERSKSISAIAFINHRNR-SKIKD----QVLSGQLKIEENSQ 486
Query: 499 D-PFSRR 504
D PF+R+
Sbjct: 487 DDPFTRK 493
Score = 69 (29.3 bits), Expect = 8.4e-24, Sum P(3) = 8.4e-24
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 574 TESNMLHDFELDISLNALKKFGGPQ 598
T+ + LHDF+LDI L LK F P+
Sbjct: 547 TDISSLHDFDLDIDLGKLKDFSTPE 571
Score = 49 (22.3 bits), Expect = 8.4e-24, Sum P(3) = 8.4e-24
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 107 QMTELEREMMIFERDDKKVDKNLRDK 132
++TELE+E IFER + + + R++
Sbjct: 93 KLTELEKEQEIFERMEARENAIAREE 118
>UNIPROTKB|D4A6Z3 [details] [associations]
symbol:Rtf1 "Protein Rtf1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001711 "endodermal
cell fate commitment" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0016593 "Cdc73/Paf1 complex" evidence=IEA] [GO:0019827 "stem
cell maintenance" evidence=IEA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0051571
"positive regulation of histone H3-K4 methylation" evidence=IEA]
[GO:0080182 "histone H3-K4 trimethylation" evidence=IEA]
InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126 PROSITE:PS51360
SMART:SM00719 GO:GO:0005634 GO:GO:0003677 GO:GO:0006352
GO:GO:0016570 IPI:IPI00947915 Ensembl:ENSRNOT00000066905
RGD:1310654 ArrayExpress:D4A6Z3 Uniprot:D4A6Z3
Length = 715
Score = 276 (102.2 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 71/249 (28%), Positives = 132/249 (53%)
Query: 261 DDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRS 320
+++ + + R KL +W PFF + + GCFVR+GIG + P+YR+ + V E +
Sbjct: 362 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 419
Query: 321 YKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSG-RMPSKQD 379
Y+L T K L + GN+ R + VS+ E EF +W +E ++G ++P+ +
Sbjct: 420 YQLGGTRTNKGLQLRHGNDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGMQLPTLDE 476
Query: 380 VLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVD 439
+ +K+ SI++ + ++ ++++++EK+ P N A +K +L +E +A+ D+
Sbjct: 477 INKKEFSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDK 536
Query: 440 MERIKKRLQELEASRDS----KVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGE 495
++I+ +L ELE ++ + K+ AI + +N++NR N SE V S
Sbjct: 537 AKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVE-SEKALVAESHNMRN 593
Query: 496 AGYDPFSRR 504
DPF+RR
Sbjct: 594 QQMDPFTRR 602
Score = 54 (24.1 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 74 DDDQGSQEEGDYDGGAXXXXXXXXXXXXXXXXXQMTELEREMMIFERDDKK 124
D D S E+ ++ G QMTE ERE +F R +K+
Sbjct: 172 DSDSSSSEDEEFHDG--YGEDLMGDEEDRARLEQMTEKEREQELFNRIEKR 220
Score = 52 (23.4 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 620 PENDGR-RHALTLTVGDYKRRRGLL 643
P DG R +L L DYK+RRGL+
Sbjct: 693 PAKDGAPRRSLNLE--DYKKRRGLI 715
Score = 37 (18.1 bits), Expect = 7.4e-22, Sum P(3) = 7.4e-22
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 69 DPAERDDDQGSQEEGD 84
D E +DD S E+ D
Sbjct: 319 DDEEEEDDDKSSEKSD 334
>UNIPROTKB|F1NY87 [details] [associations]
symbol:RTF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0001711
"endodermal cell fate commitment" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex" evidence=IEA]
[GO:0019827 "stem cell maintenance" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0051571 "positive regulation of histone H3-K4
methylation" evidence=IEA] [GO:0080182 "histone H3-K4
trimethylation" evidence=IEA] InterPro:IPR004343 InterPro:IPR018144
Pfam:PF03126 PROSITE:PS51360 SMART:SM00719 GO:GO:0005730
GO:GO:0045944 GO:GO:0006352 GO:GO:0000122 GO:GO:0003697
GO:GO:0051571 GO:GO:0032968 GO:GO:0080182 GO:GO:0016593
GeneTree:ENSGT00390000012493 OMA:CKPTMVS EMBL:AADN02033532
EMBL:AC145946 IPI:IPI00591962 Ensembl:ENSGALT00000013996
ArrayExpress:F1NY87 Uniprot:F1NY87
Length = 701
Score = 272 (100.8 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 70/249 (28%), Positives = 132/249 (53%)
Query: 261 DDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRS 320
+++ + + R KL +W PFF + + GCFVR+GIG + P+YR+ + V E +
Sbjct: 348 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 405
Query: 321 YKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSG-RMPSKQD 379
Y+L T K L + G++ R + VS+ E EF +W +E ++G ++P+ +
Sbjct: 406 YQLGGTRTNKGLQLRHGSDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGMQLPTLDE 462
Query: 380 VLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVD 439
+ +K+ SI++ + ++ ++++++EK+ P N A +K +L +E +A+ D+
Sbjct: 463 INKKEVSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDK 522
Query: 440 MERIKKRLQELEASRDS----KVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGE 495
++I+ +L ELE ++ + K+ AI + +N++NR N SE V S
Sbjct: 523 AKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVE-SEKALVAESHSMKN 579
Query: 496 AGYDPFSRR 504
DPF+RR
Sbjct: 580 QQMDPFTRR 588
Score = 56 (24.8 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 74 DDDQGSQEEGDYDGGAXXXXXXXXXXXXXXXXXQMTELEREMMIFERDDKK 124
D D S++E +DG QMTE ERE +F R +K+
Sbjct: 159 DSDSSSEDEEFHDG---YGEDLMGDEEDRARLEQMTEKEREQELFNRIEKR 206
Score = 54 (24.1 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 24/83 (28%), Positives = 36/83 (43%)
Query: 562 KLVDTNAPLDLGTESNMLHDFELDISLNALKKFGGPQGVLAGFMARKQRIEATVGCQVPE 621
K V++ + DL + +HDF++ I L P + + A P
Sbjct: 635 KDVNSKSASDLSEDLFKVHDFDVKIDLQV------PSS--------ESKALAITSKAPPA 680
Query: 622 NDGR-RHALTLTVGDYKRRRGLL 643
DG R +L L DYK+RRGL+
Sbjct: 681 KDGAPRRSLNLE--DYKKRRGLI 701
>UNIPROTKB|F1SSV6 [details] [associations]
symbol:RTF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016570 "histone modification" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126
PROSITE:PS51360 SMART:SM00719 GO:GO:0005634 GO:GO:0003677
GO:GO:0006352 GO:GO:0016570 GeneTree:ENSGT00390000012493
EMBL:CU467734 EMBL:AEMK01175632 EMBL:CU633572
Ensembl:ENSSSCT00000005246 Uniprot:F1SSV6
Length = 701
Score = 271 (100.5 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 70/249 (28%), Positives = 132/249 (53%)
Query: 261 DDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRS 320
+++ + + R KL +W PFF + + GCFVR+GIG + P+YR+ + V E +
Sbjct: 348 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 405
Query: 321 YKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSG-RMPSKQD 379
Y+L T K L + G++ R + VS+ E EF +W +E ++G ++P+ +
Sbjct: 406 YQLGGTRTNKGLQLRHGSDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGMQLPTLDE 462
Query: 380 VLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVD 439
+ +K+ SI++ + ++ ++++++EK+ P N A +K +L +E +A+ D+
Sbjct: 463 INKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDK 522
Query: 440 MERIKKRLQELEASRDS----KVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGE 495
++I+ +L ELE ++ + K+ AI + +N++NR N SE V S
Sbjct: 523 AKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVE-SEKALVAESHNMKN 579
Query: 496 AGYDPFSRR 504
DPF+RR
Sbjct: 580 QQMDPFTRR 588
Score = 56 (24.8 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 74 DDDQGSQEEGDYDGGAXXXXXXXXXXXXXXXXXQMTELEREMMIFERDDKK 124
D D S++E +DG QMTE ERE +F R +K+
Sbjct: 159 DSDSSSEDEEFHDG---YGEDLMGDEEDRARLEQMTEKEREQELFNRIEKR 206
Score = 52 (23.4 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 620 PENDGR-RHALTLTVGDYKRRRGLL 643
P DG R +L L DYK+RRGL+
Sbjct: 679 PAKDGAPRRSLNLE--DYKKRRGLI 701
>UNIPROTKB|F1N6E9 [details] [associations]
symbol:RTF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0080182 "histone H3-K4 trimethylation" evidence=IEA]
[GO:0051571 "positive regulation of histone H3-K4 methylation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001711 "endodermal
cell fate commitment" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126
PROSITE:PS51360 SMART:SM00719 GO:GO:0005730 GO:GO:0045944
GO:GO:0006352 GO:GO:0000122 GO:GO:0003697 GO:GO:0019827
GO:GO:0051571 GO:GO:0032968 GO:GO:0080182 GO:GO:0016593
GO:GO:0001711 CTD:23168 GeneTree:ENSGT00390000012493 KO:K15178
OMA:CKPTMVS EMBL:DAAA02028563 IPI:IPI00721589 RefSeq:NP_001179414.1
UniGene:Bt.10050 PRIDE:F1N6E9 Ensembl:ENSBTAT00000002191
GeneID:518260 KEGG:bta:518260 NextBio:20872617 Uniprot:F1N6E9
Length = 714
Score = 271 (100.5 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 70/249 (28%), Positives = 132/249 (53%)
Query: 261 DDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRS 320
+++ + + R KL +W PFF + + GCFVR+GIG + P+YR+ + V E +
Sbjct: 361 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 418
Query: 321 YKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSG-RMPSKQD 379
Y+L T K L + G++ R + VS+ E EF +W +E ++G ++P+ +
Sbjct: 419 YQLGGTRTNKGLQLRHGSDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGMQLPTLDE 475
Query: 380 VLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVD 439
+ +K+ SI++ + ++ ++++++EK+ P N A +K +L +E +A+ D+
Sbjct: 476 INKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDK 535
Query: 440 MERIKKRLQELEASRDS----KVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGE 495
++I+ +L ELE ++ + K+ AI + +N++NR N SE V S
Sbjct: 536 AKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVE-SEKALVAESHNMKN 592
Query: 496 AGYDPFSRR 504
DPF+RR
Sbjct: 593 QQMDPFTRR 601
Score = 56 (24.8 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 74 DDDQGSQEEGDYDGGAXXXXXXXXXXXXXXXXXQMTELEREMMIFERDDKK 124
D D S++E +DG QMTE ERE +F R +K+
Sbjct: 172 DSDSSSEDEEFHDG---YGEDLMGDEEDRARLEQMTEKEREQELFNRIEKR 219
Score = 52 (23.4 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 620 PENDGR-RHALTLTVGDYKRRRGLL 643
P DG R +L L DYK+RRGL+
Sbjct: 692 PAKDGAPRRSLNLE--DYKKRRGLI 714
>UNIPROTKB|I3LJZ5 [details] [associations]
symbol:RTF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0080182 "histone H3-K4 trimethylation" evidence=IEA]
[GO:0051571 "positive regulation of histone H3-K4 methylation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001711 "endodermal
cell fate commitment" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126
PROSITE:PS51360 SMART:SM00719 GO:GO:0005730 GO:GO:0045944
GO:GO:0006352 GO:GO:0000122 GO:GO:0003697 GO:GO:0019827
GO:GO:0051571 GO:GO:0032968 GO:GO:0080182 GO:GO:0016593
GO:GO:0001711 GeneTree:ENSGT00390000012493 OMA:CKPTMVS
EMBL:CU467734 EMBL:AEMK01175632 EMBL:CU633572
Ensembl:ENSSSCT00000031282 Uniprot:I3LJZ5
Length = 715
Score = 271 (100.5 bits), Expect = 3.4e-23, Sum P(3) = 3.4e-23
Identities = 70/249 (28%), Positives = 132/249 (53%)
Query: 261 DDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRS 320
+++ + + R KL +W PFF + + GCFVR+GIG + P+YR+ + V E +
Sbjct: 362 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 419
Query: 321 YKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSG-RMPSKQD 379
Y+L T K L + G++ R + VS+ E EF +W +E ++G ++P+ +
Sbjct: 420 YQLGGTRTNKGLQLRHGSDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGMQLPTLDE 476
Query: 380 VLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVD 439
+ +K+ SI++ + ++ ++++++EK+ P N A +K +L +E +A+ D+
Sbjct: 477 INKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDK 536
Query: 440 MERIKKRLQELEASRDS----KVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGE 495
++I+ +L ELE ++ + K+ AI + +N++NR N SE V S
Sbjct: 537 AKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVE-SEKALVAESHNMKN 593
Query: 496 AGYDPFSRR 504
DPF+RR
Sbjct: 594 QQMDPFTRR 602
Score = 56 (24.8 bits), Expect = 3.4e-23, Sum P(3) = 3.4e-23
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 74 DDDQGSQEEGDYDGGAXXXXXXXXXXXXXXXXXQMTELEREMMIFERDDKK 124
D D S++E +DG QMTE ERE +F R +K+
Sbjct: 173 DSDSSSEDEEFHDG---YGEDLMGDEEDRARLEQMTEKEREQELFNRIEKR 220
Score = 52 (23.4 bits), Expect = 3.4e-23, Sum P(3) = 3.4e-23
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 620 PENDGR-RHALTLTVGDYKRRRGLL 643
P DG R +L L DYK+RRGL+
Sbjct: 693 PAKDGAPRRSLNLE--DYKKRRGLI 715
>UNIPROTKB|Q5RAD5 [details] [associations]
symbol:RTF1 "RNA polymerase-associated protein RTF1
homolog" species:9601 "Pongo abelii" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001711 "endodermal cell fate commitment"
evidence=ISS] [GO:0003697 "single-stranded DNA binding"
evidence=ISS] [GO:0016593 "Cdc73/Paf1 complex" evidence=ISS]
[GO:0019827 "stem cell maintenance" evidence=ISS] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126
PROSITE:PS51360 SMART:SM00719 GO:GO:0016055 GO:GO:0045944
GO:GO:0006352 GO:GO:0000122 GO:GO:0016570 GO:GO:0003697
GO:GO:0019827 GO:GO:0032968 GO:GO:0016593 GO:GO:0001711 HSSP:Q96BX6
HOVERGEN:HBG057331 EMBL:CR859083 UniGene:Pab.3521 PRIDE:Q5RAD5
InParanoid:Q5RAD5 Uniprot:Q5RAD5
Length = 665
Score = 276 (102.2 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 71/249 (28%), Positives = 132/249 (53%)
Query: 261 DDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRS 320
+++ + + R KL +W PFF + + GCFVR+GIG + P+YR+ + V E +
Sbjct: 352 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 409
Query: 321 YKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSG-RMPSKQD 379
Y+L T K L + GN+ R + VS+ E EF +W +E ++G ++P+ +
Sbjct: 410 YQLGGTRTNKGLQLRHGNDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGMQLPTLDE 466
Query: 380 VLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVD 439
+ +K+ SI++ + ++ ++++++EK+ P N A +K +L +E +A+ D+
Sbjct: 467 INKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDK 526
Query: 440 MERIKKRLQELEASRDS----KVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGE 495
++I+ +L ELE ++ + K+ AI + +N++NR N SE V S
Sbjct: 527 AKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVE-SEKALVAESHNMKN 583
Query: 496 AGYDPFSRR 504
DPF+RR
Sbjct: 584 QQMDPFTRR 592
Score = 56 (24.8 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 74 DDDQGSQEEGDYDGGAXXXXXXXXXXXXXXXXXQMTELEREMMIFERDDKK 124
D D S++E +DG QMTE ERE +F R +K+
Sbjct: 163 DSDSSSEDEEFHDG---YGEDLMGDEEDRARLEQMTEKEREQELFNRIEKR 210
Score = 38 (18.4 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 562 KLVDTNAPLDLGTESNMLHDFELDISL 588
K +++ + DL + +HDF++ I L
Sbjct: 639 KDLNSKSASDLSEDLFKVHDFDVKIDL 665
>UNIPROTKB|Q5ZKE3 [details] [associations]
symbol:RTF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0001711
"endodermal cell fate commitment" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex" evidence=IEA]
[GO:0019827 "stem cell maintenance" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0051571 "positive regulation of histone H3-K4
methylation" evidence=IEA] [GO:0080182 "histone H3-K4
trimethylation" evidence=IEA] InterPro:IPR004343 InterPro:IPR018144
Pfam:PF03126 PROSITE:PS51360 SMART:SM00719 GO:GO:0005730
GO:GO:0045944 GO:GO:0006352 GO:GO:0000122 GO:GO:0003697
GO:GO:0051571 GO:GO:0032968 GO:GO:0080182 GO:GO:0016593
eggNOG:COG5296 GeneTree:ENSGT00390000012493 HOGENOM:HOG000231764
HOVERGEN:HBG057331 OrthoDB:EOG4X97GV EMBL:AADN02033532
EMBL:AC145946 EMBL:AJ720141 IPI:IPI00820846 UniGene:Gga.22583
STRING:Q5ZKE3 Ensembl:ENSGALT00000013997 InParanoid:Q5ZKE3
Uniprot:Q5ZKE3
Length = 585
Score = 272 (100.8 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 70/249 (28%), Positives = 132/249 (53%)
Query: 261 DDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRS 320
+++ + + R KL +W PFF + + GCFVR+GIG + P+YR+ + V E +
Sbjct: 317 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV--VETAKV 374
Query: 321 YKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSG-RMPSKQD 379
Y+L T K L + G++ R + VS+ E EF +W +E ++G ++P+ +
Sbjct: 375 YQLGGTRTNKGLQLRHGSDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGMQLPTLDE 431
Query: 380 VLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVD 439
+ +K+ SI++ + ++ ++++++EK+ P N A +K +L +E +A+ D+
Sbjct: 432 INKKEVSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDK 491
Query: 440 MERIKKRLQELEASRDS----KVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGE 495
++I+ +L ELE ++ + K+ AI + +N++NR N SE V S
Sbjct: 492 AKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVE-SEKALVAESHSMKN 548
Query: 496 AGYDPFSRR 504
DPF+RR
Sbjct: 549 QQMDPFTRR 557
Score = 56 (24.8 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 74 DDDQGSQEEGDYDGGAXXXXXXXXXXXXXXXXXQMTELEREMMIFERDDKK 124
D D S++E +DG QMTE ERE +F R +K+
Sbjct: 128 DSDSSSEDEEFHDG---YGEDLMGDEEDRARLEQMTEKEREQELFNRIEKR 175
>POMBASE|SPBC651.09c [details] [associations]
symbol:SPBC651.09c "RNA polymerase II associated Paf1
complex (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=ISO] [GO:0016571 "histone
methylation" evidence=ISO] [GO:0016574 "histone ubiquitination"
evidence=ISO] [GO:0016593 "Cdc73/Paf1 complex" evidence=ISO]
InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126 PROSITE:PS51360
SMART:SM00719 PomBase:SPBC651.09c GO:GO:0006355 GO:GO:0003677
EMBL:CU329671 GO:GO:0006352 GO:GO:0006368 GO:GO:0016574
GO:GO:0016593 GO:GO:0016571 HSSP:Q96BX6 eggNOG:COG5296 KO:K15178
PIR:T40608 RefSeq:NP_595507.1 ProteinModelPortal:O94667
STRING:O94667 EnsemblFungi:SPBC651.09c.1 GeneID:2541123
KEGG:spo:SPBC651.09c OMA:MDDDIIG OrthoDB:EOG4WWVTN NextBio:20802236
Uniprot:O94667
Length = 560
Score = 254 (94.5 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 64/218 (29%), Positives = 108/218 (49%)
Query: 262 DIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRSY 321
D+ I + R +A++ P FE + GCFVRV IG +YRLC V+ + E + Y
Sbjct: 219 DLNAIRLGRKHVAEYMYHPIFESTVTGCFVRVKIGERDGQGVYRLCQVKGI--LESRKPY 276
Query: 322 KLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSGRMPSKQDVL 381
+++ T L G + + ++S+ P + +F++W ++ + MPSK V
Sbjct: 277 RVDGVLTKVSLECFHGRSKRV--FDVNVLSNEPFSDHDFQRWHHQMMEDKLSMPSKNFVQ 334
Query: 382 EKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVDME 441
K ++ ++ +V S V ++ KK S P N+AAEK RLR+ + A + ++
Sbjct: 335 RKLNDLRDMSKYVLSEKEVSDIINRKKELSRVPSNIAAEKTRLRQRRQAAYVAGNAELVK 394
Query: 442 RIKKRLQELEA-SRDSKVKDAKAI-RLAEMNRKNRVEN 477
I +L LE S S A+ +LA++N +NR N
Sbjct: 395 EIDDQLNTLEELSMGSNQNSNSAMDQLAKVNERNRRRN 432
Score = 55 (24.4 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 9/16 (56%), Positives = 15/16 (93%)
Query: 108 MTELEREMMIFERDDK 123
MTE+ERE ++FER+++
Sbjct: 92 MTEIERESILFEREEE 107
>SGD|S000003213 [details] [associations]
symbol:RTF1 "Subunit of RNAPII-associated chromatin
remodeling Paf1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0016593 "Cdc73/Paf1
complex" evidence=IPI] [GO:2001165 "positive regulation of
phosphorylation of RNA polymerase II C-terminal domain serine 2
residues" evidence=IMP] [GO:0034402 "recruitment of 3'-end
processing factors to RNA polymerase II holoenzyme complex"
evidence=IMP] [GO:0070911 "global genome nucleotide-excision
repair" evidence=IMP] [GO:0090262 "regulation of
transcription-coupled nucleotide-excision repair" evidence=IGI]
[GO:0051569 "regulation of histone H3-K4 methylation" evidence=IMP]
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:2001173 "regulation of histone H2B conserved C-terminal lysine
ubiquitination" evidence=IDA;IMP] [GO:2001163 "regulation of
phosphorylation of RNA polymerase II C-terminal domain serine 2
residues" evidence=IMP] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IGI;IMP] [GO:2001209 "positive
regulation of transcription elongation from RNA polymerase I
promoter" evidence=IDA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0031126 "snoRNA 3'-end processing" evidence=IMP] [GO:0001015
"snoRNA transcription from an RNA polymerase II promoter"
evidence=IMP] [GO:0031938 "regulation of chromatin silencing at
telomere" evidence=IMP] [GO:2001160 "regulation of histone H3-K79
methylation" evidence=IMP] [GO:2001166 "regulation of histone H2B
ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0001076 "RNA polymerase II transcription factor
binding transcription factor activity" evidence=IPI] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IGI] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IMP]
[GO:0031124 "mRNA 3'-end processing" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IEA] [GO:0016570 "histone modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126 PROSITE:PS51360
SMART:SM00719 SGD:S000003213 EMBL:BK006941 GO:GO:0003677
GO:GO:0006352 GO:GO:0003723 GO:GO:0070911 GO:GO:0000122
GO:GO:0016570 GO:GO:0006368 EMBL:Z49149 GO:GO:0035327 GO:GO:0001076
GO:GO:0031938 GO:GO:0032968 GO:GO:0051569 GO:GO:0016593
GO:GO:2001165 GO:GO:2001209 GO:GO:0034402 GO:GO:2001173
GO:GO:0090262 GO:GO:0031126 GO:GO:0001015 eggNOG:COG5296
GeneTree:ENSGT00390000012493 KO:K15178 OrthoDB:EOG4WWVTN
EMBL:U86702 EMBL:Z72766 EMBL:Z72767 PIR:S53936 RefSeq:NP_011270.1
ProteinModelPortal:P53064 SMR:P53064 DIP:DIP-4065N IntAct:P53064
MINT:MINT-502955 STRING:P53064 PaxDb:P53064 PeptideAtlas:P53064
EnsemblFungi:YGL244W GeneID:852607 KEGG:sce:YGL244W CYGD:YGL244w
HOGENOM:HOG000065976 OMA:YPLEGKY NextBio:971796
Genevestigator:P53064 GermOnline:YGL244W GO:GO:2001160
Uniprot:P53064
Length = 558
Score = 252 (93.8 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 80/276 (28%), Positives = 132/276 (47%)
Query: 258 PTYDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKN-GPI-YRLCMVRNVDAT 315
P D ++ I RS +AK+ P FE+ + GC+ RV +G K G YR+ + V
Sbjct: 239 PEISDFNKLRIGRSFVAKFCFYPGFEDAVKGCYGRVNVGTDKRTGKTSYRMVRIERVFLQ 298
Query: 316 EPDRSYKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSGRMP 375
+P Y + T +Y VT G + +QM SD E+E++++LR ++ + P
Sbjct: 299 KP---YNMGKFYTNQYFGVTQGKDRKV--FQMNYFSDGLFAEDEYQRYLRALDNSQMIKP 353
Query: 376 SKQDVLEK-KESIQKINTFVYSAAT---VKQMLQEKKSASSRPLNVAAEKDRLRRELEVA 431
S + K KE + +NT + T V+ +Q K S N EK LR +L+ A
Sbjct: 354 SLHSLSNKTKEVMDFVNTPLTDKTTDEVVRHRMQFNKKLSGT--NAVLEKTVLREKLQYA 411
Query: 432 QSRHDEVDMER-------IKKRLQELEASRDSKVKDAKAI-RLAEMNRKNRVENFKNASE 483
+ ++E D+ + +KR+ E ++ D K + L NRK + N +NA
Sbjct: 412 KETNNEKDIAKYSAQLRNFEKRMSVYEKHHENDQSDIKKLGELTSKNRKLNMSNIRNAEH 471
Query: 484 LKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEE 519
+K+ +++ ++ DPFSR TR++ YY EE
Sbjct: 472 VKKEDSNNFDSKS--DPFSRLKTRTKVYYQEIQKEE 505
Score = 42 (19.8 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 108 MTELEREMMIFER 120
+ E+ERE ++FER
Sbjct: 98 LPEMERETLLFER 110
>FB|FBgn0034722 [details] [associations]
symbol:Rtf1 "Rtf1" species:7227 "Drosophila melanogaster"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0035327 "transcriptionally active chromatin"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0051571 "positive regulation of
histone H3-K4 methylation" evidence=IMP] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI]
InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126 PROSITE:PS51360
SMART:SM00719 EMBL:AE013599 GO:GO:0005634 GO:GO:0045893
GO:GO:0005654 GO:GO:0003677 GO:GO:0007219 GO:GO:0006352
GO:GO:0045747 GO:GO:0035327 GO:GO:0042800 GO:GO:0051571
RefSeq:NP_611665.1 UniGene:Dm.734 HSSP:Q96BX6
ProteinModelPortal:Q9W261 SMR:Q9W261 IntAct:Q9W261
MINT:MINT-1547542 STRING:Q9W261 PaxDb:Q9W261 PRIDE:Q9W261
EnsemblMetazoa:FBtr0071820 GeneID:37554 KEGG:dme:Dmel_CG10955
UCSC:CG10955-RA CTD:23168 FlyBase:FBgn0034722 eggNOG:COG5296
GeneTree:ENSGT00390000012493 InParanoid:Q9W261 KO:K15178
OMA:PTNYAMK OrthoDB:EOG45QFVK PhylomeDB:Q9W261 ChiTaRS:RTF1
GenomeRNAi:37554 NextBio:804255 Bgee:Q9W261 GermOnline:CG10955
Uniprot:Q9W261
Length = 775
Score = 257 (95.5 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 70/257 (27%), Positives = 126/257 (49%)
Query: 259 TYDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPD 318
T +D+ ++ + R K+ ++ P FE ++ CFVR+ IG + P+YR+ + V E
Sbjct: 430 TREDLNKLRLSRYKMERFVNLPIFESTVLNCFVRISIGNNGQKPVYRVAEI--VGVVETG 487
Query: 319 RSYKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSGRMPSKQ 378
+ Y L T + L + G + R + +S+ E EF +W +++ +MP+
Sbjct: 488 KIYSLGTTRTNRGLRLKHGTQERVFR--LEFISNQEFTENEFNKWNEVCQQSHVQMPTID 545
Query: 379 DVLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEV 438
+ K+ I+K + + V ++++EK +RP N A +K L +E + A R D
Sbjct: 546 LIAIKQNDIKKALNYEFKDEDVDKIVEEKNRFRNRPTNYAMKKTCLMKERDAAMLRGDYD 605
Query: 439 DMERIKKRLQELE--ASRDSKVKDAKAIRLAEMNRKNRVENFKNAS----ELKRVNTSLK 492
+ + +++ ELE AS K + ++ +N +NR +N ++A E R N LK
Sbjct: 606 IAQDLGQQIDELENRASELDKRRSHTLNLISYINDRNRKKNVEDAEKAILEEARANKGLK 665
Query: 493 AGEAGYDPFSRRWTRSR 509
DPF+RR T+ R
Sbjct: 666 IS----DPFTRRITQPR 678
Score = 43 (20.2 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 630 TLTVGDYKRRRGLL 643
+L + DYK++RGL+
Sbjct: 762 SLNLEDYKKKRGLI 775
Score = 37 (18.1 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 579 LHDFELDISL 588
LHDF++D+ +
Sbjct: 729 LHDFDIDLDV 738
>DICTYBASE|DDB_G0286523 [details] [associations]
symbol:DDB_G0286523 species:44689 "Dictyostelium
discoideum" [GO:0016570 "histone modification" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004343 Pfam:PF03126 PROSITE:PS51360
dictyBase:DDB_G0286523 GO:GO:0005634 GO:GO:0003677 GO:GO:0006352
GO:GO:0016570 EMBL:AAFI02000087 eggNOG:COG5296 KO:K15178
RefSeq:XP_637691.1 ProteinModelPortal:Q54LP1
EnsemblProtists:DDB0218834 GeneID:8625657 KEGG:ddi:DDB_G0286523
InParanoid:Q54LP1 OMA:PMDMEIS Uniprot:Q54LP1
Length = 627
Score = 247 (92.0 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 69/250 (27%), Positives = 127/250 (50%)
Query: 263 IKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRSYK 322
+ + + R+ L KW +P+FE FVRV IG N PIYR+ + V+ + YK
Sbjct: 267 MNQCRLSRNMLVKWVDQPYFERYAPNFFVRVVIGSHLNNPIYRIAEI--VEIRTGHKQYK 324
Query: 323 LENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSGRMPSKQDVLE 382
+EN+ T K L +++ S + + VS++ E ++W+ ++ R +P+ +++
Sbjct: 325 VENKETDKLLVLSYAG--STKEFGIENVSNNAITPAEHEKWISDMVRAKQVLPTPEEIDM 382
Query: 383 KKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDR---LRRELEVAQSRHDEVD 439
K I+K + Y+ +++ ++ P+N+A EK + LR L+ QS+
Sbjct: 383 KIGDIKKAQDYTYTNEDIEKRASDRSKYLKTPVNIAIEKAKSIALRETLD-PQSQEYRTI 441
Query: 440 MERIKKRLQELEAS-RDSKVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGEAGY 498
E+I++ L +L S ++ V + + +N+KN+ NFK S + TS + +
Sbjct: 442 CEKIEE-LTKLAISIKEENVSKVDQL-IQTINKKNKSLNFKYQSTTQ---TSTEQVSNEF 496
Query: 499 DPFSRRWTRS 508
DPF+RR TR+
Sbjct: 497 DPFARRKTRN 506
Score = 38 (18.4 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 22/113 (19%), Positives = 36/113 (31%)
Query: 108 MTELEREMMIFERDDKKVDKNLRDKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 167
+ E++RE ++ ER +K+ K R+ +
Sbjct: 106 LPEIDRENILSERYEKR--KEARELWLQQKSIRDREKKSGSQVDNKLKSQSSTRGRSEKE 163
Query: 168 XXXXXXXNELRAKRLK-QQDPEAHRRLRDASRGGSGSRVLSPVKRKAFTPAGL 219
+L+ KR K ++D E D+ GG G S TP L
Sbjct: 164 DRQREALKDLQKKREKSKKDKEEEE---DSGGGGGGGTTGSASSSNNNTPTSL 213
>ASPGD|ASPL0000075787 [details] [associations]
symbol:rtfA species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0016570 "histone
modification" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IEA] [GO:0035327 "transcriptionally active chromatin"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001076
"RNA polymerase II transcription factor binding transcription
factor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0010913 "regulation of sterigmatocystin biosynthetic process"
evidence=IMP] [GO:1900376 "regulation of secondary metabolite
biosynthetic process" evidence=IMP] [GO:0043935 "sexual sporulation
resulting in formation of a cellular spore" evidence=IMP]
[GO:0030448 "hyphal growth" evidence=IMP] [GO:0043936 "asexual
sporulation resulting in formation of a cellular spore"
evidence=IMP] [GO:0090262 "regulation of transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:2001160 "regulation of
histone H3-K79 methylation" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0001015 "snoRNA transcription from an
RNA polymerase II promoter" evidence=IEA] [GO:0051569 "regulation
of histone H3-K4 methylation" evidence=IEA] [GO:2001173 "regulation
of histone H2B conserved C-terminal lysine ubiquitination"
evidence=IEA] [GO:0070911 "global genome nucleotide-excision
repair" evidence=IEA] [GO:0034402 "recruitment of 3'-end processing
factors to RNA polymerase II holoenzyme complex" evidence=IEA]
[GO:0031938 "regulation of chromatin silencing at telomere"
evidence=IEA] [GO:0031126 "snoRNA 3'-end processing" evidence=IEA]
[GO:2001209 "positive regulation of transcription elongation from
RNA polymerase I promoter" evidence=IEA] [GO:2001165 "positive
regulation of phosphorylation of RNA polymerase II C-terminal
domain serine 2 residues" evidence=IEA] InterPro:IPR004343
Pfam:PF03126 PROSITE:PS51360 GO:GO:0005634 GO:GO:0003677
GO:GO:0006352 GO:GO:0016570 GO:GO:0003746 EMBL:BN001303
EMBL:AACD01000078 eggNOG:COG5296 KO:K15178 OMA:YPLEGKY
RefSeq:XP_662174.1 ProteinModelPortal:Q5B4G0 STRING:Q5B4G0
EnsemblFungi:CADANIAT00005867 GeneID:2872371 KEGG:ani:AN4570.2
HOGENOM:HOG000184951 OrthoDB:EOG4Q5CZ2 Uniprot:Q5B4G0
Length = 600
Score = 232 (86.7 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 72/287 (25%), Positives = 139/287 (48%)
Query: 262 DIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPI-YRLCMVRNVDATEPDRS 320
DI+ + R+ A+ P FE+ +VGC+VR+ +G + NG YRL M+ + + +
Sbjct: 271 DIQRARVGRTNFAQVCFYPGFEDTMVGCYVRLNVGPNPNGVNEYRLAMITEI---KEGKK 327
Query: 321 YKLENR-----TTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSGRMP 375
Y LE TT +Y + G + A + SDSP E EF +W + + +MP
Sbjct: 328 YALEGANGRTFTTDQYAVLAHGKTTRA--FPFVACSDSPFTEAEFNRWRQVMAVEDCKMP 385
Query: 376 SKQDVLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRH 435
+K + +K I ++ ++ + + L+++ ++ ++ + ++L++AQ
Sbjct: 386 TKSQLAKKVMDINRLINHQFTPEELNEKLRKQGLLDTK--TTFFKRVDIEKKLKIAQELG 443
Query: 436 DEVDMERIKKRLQELEASRDSKV--KDAKAIRLAEMNRKNRVENFKNA--SELKRVNTSL 491
D+ ++ R++ L L +S + K + RLA++N +N+ N++N ++++ S
Sbjct: 444 DDDEVGRLQVELANLGSSAKPRTEKKLTEHERLAQLNLRNQKLNYENVRRAQIEERKASR 503
Query: 492 KA------GEAGYDPFSRRWTRSRNYYISKPGEEVTAEANGDKNGVP 532
KA GE +PF R TR++ +Y + E NG + P
Sbjct: 504 KAAAAAARGEGSLNPFLRVKTRAKTHYDAN--ESTPKSENGSPSVTP 548
>FB|FBgn0051702 [details] [associations]
symbol:CG31702 species:7227 "Drosophila melanogaster"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0016570 "histone modification" evidence=IEA]
InterPro:IPR004343 Pfam:PF03126 PROSITE:PS51360 GO:GO:0005634
EMBL:AE014134 GO:GO:0003677 GO:GO:0006352 GO:GO:0016570
GeneTree:ENSGT00390000012493 KO:K15178 OrthoDB:EOG4HX3GB
EMBL:BT120025 RefSeq:NP_724373.1 UniGene:Dm.21503 SMR:Q8IME8
EnsemblMetazoa:FBtr0085934 GeneID:318904 KEGG:dme:Dmel_CG31702
UCSC:CG31702-RA FlyBase:FBgn0051702 InParanoid:Q8IME8 OMA:IMERDMA
GenomeRNAi:318904 NextBio:846500 Uniprot:Q8IME8
Length = 441
Score = 182 (69.1 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 43/191 (22%), Positives = 98/191 (51%)
Query: 261 DDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRS 320
+ + ++R+ + +P F E ++G FVR+ +G+ +Y + + + +
Sbjct: 103 EQLSRAVLKRNDIKNLLGKPIFAEAVIGSFVRINVGK-----VYSI--YETIALHQDSKD 155
Query: 321 YKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSGRMPSKQDV 380
Y+++ + T L + G+E +R + +VS+ P ++EF WL RN +P+ D+
Sbjct: 156 YRVDGKRTNLTLVLRCGSEKRYSR--IDVVSNQPITQKEFLLWLETNLRNRCTLPTLNDI 213
Query: 381 LEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVDM 440
+K+ ++ + Y+ V++++Q+KK A + N A K L E ++A +D +
Sbjct: 214 AKKQVQVKNACKYSYTETDVEKLIQDKKEAGIKQ-NAAYRKISLIIERDMAAGMNDVEKV 272
Query: 441 ERIKKRLQELE 451
+ ++K++ E++
Sbjct: 273 QVLEKKILEID 283
>FB|FBgn0051703 [details] [associations]
symbol:CG31703 species:7227 "Drosophila melanogaster"
[GO:0016570 "histone modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004343 Pfam:PF03126 PROSITE:PS51360 GO:GO:0005634
EMBL:AE014134 GO:GO:0003677 GO:GO:0006352 GO:GO:0016570
eggNOG:COG5296 GeneTree:ENSGT00390000012493 KO:K15178
RefSeq:NP_724376.1 ProteinModelPortal:Q8IME7 SMR:Q8IME7
PRIDE:Q8IME7 EnsemblMetazoa:FBtr0085946 GeneID:318905
KEGG:dme:Dmel_CG31703 UCSC:CG31703-RA FlyBase:FBgn0051703
InParanoid:Q8IME7 OrthoDB:EOG4HX3GB PhylomeDB:Q8IME7
GenomeRNAi:318905 NextBio:846505 Uniprot:Q8IME7
Length = 439
Score = 181 (68.8 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 43/191 (22%), Positives = 98/191 (51%)
Query: 261 DDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRS 320
+ + ++R+ + +P F E ++G FVR+ +G+ +Y + + + +
Sbjct: 103 EQLSRAVLKRNDIKNLLGKPIFAEAVIGSFVRLNVGK-----VYSI--YETIALHQDSKD 155
Query: 321 YKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSGRMPSKQDV 380
Y+++ + T L + G+E +R + +VS+ P ++EF WL RN +P+ D+
Sbjct: 156 YRVDGKRTNLILVLRCGSEKRYSR--IDVVSNQPITQKEFLLWLETNLRNRCTLPTLNDI 213
Query: 381 LEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVDM 440
+K+ ++ + Y+ V++++Q+KK A + N A K L E ++A +D +
Sbjct: 214 AKKQVQVKNACKYSYTETDVEKLIQDKKEAGIKQ-NAAYRKISLIIERDMAAGMNDVEKV 272
Query: 441 ERIKKRLQELE 451
+ ++K++ E++
Sbjct: 273 QVLEKKILEID 283
>UNIPROTKB|H0YKX1 [details] [associations]
symbol:RTF1 "RNA polymerase-associated protein RTF1
homolog" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0016570
"histone modification" evidence=IEA] InterPro:IPR004343
Pfam:PF03126 PROSITE:PS51360 GO:GO:0005634 GO:GO:0003677
GO:GO:0006352 GO:GO:0016570 EMBL:AC087721 ChiTaRS:RTF1
HGNC:HGNC:28996 Ensembl:ENST00000560447 Uniprot:H0YKX1
Length = 171
Score = 136 (52.9 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 40/155 (25%), Positives = 85/155 (54%)
Query: 328 TCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSG-RMPSKQDVLEKKES 386
T K L + GN+ R + VS+ E EF +W +E ++G ++P+ ++ +K+ S
Sbjct: 5 TNKGLQLRHGNDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGMQLPTLDEINKKELS 61
Query: 387 IQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVDMERIKKR 446
I++ + ++ ++++++EK+ P N A +K +L +E +A+ D+ ++I+ +
Sbjct: 62 IKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQ 121
Query: 447 LQELEASRDS----KVKDAKAIRLAEMNRKNRVEN 477
L ELE ++ + K+ AI + +N++NR N
Sbjct: 122 LNELEERAEALDRQRTKNISAI--SYINQRNREWN 154
>DICTYBASE|DDB_G0286543 [details] [associations]
symbol:DDB_G0286543 "RUN domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0286543 InterPro:IPR004012 Pfam:PF02759
PROSITE:PS50826 EMBL:AAFI02000088 RefSeq:XP_637674.2
ProteinModelPortal:Q54LN3 EnsemblProtists:DDB0235370 GeneID:8625667
KEGG:ddi:DDB_G0286543 OMA:ALEENDT Uniprot:Q54LN3
Length = 1361
Score = 128 (50.1 bits), Expect = 0.00023, P = 0.00023
Identities = 36/138 (26%), Positives = 68/138 (49%)
Query: 350 VSDSPPLEEEFKQWLREVERNSGRMPSKQDVLEKKESIQKINTFVYSAATVKQMLQEKKS 409
+ D EEE +Q ++E+ + + +Q+++EK++ I+K VKQ QEKK+
Sbjct: 219 IDDQQEEEEEIEQEEEQLEKENEKEKEQQEIIEKQKEIEKQKEI--EKEKVKQKEQEKKN 276
Query: 410 ASSRPLNVAAEKDRLRRELEVAQSRHDEVDMER-IKKRLQELEASRDSKVKDAKAIRLAE 468
R EK++L + E + R E D ER ++K + L+ K+K+ + + +
Sbjct: 277 EKERQ-----EKEKLEKIKEKEREREKERDKERELEKERERLKEKEREKLKEKEKEKQKQ 331
Query: 469 MNRKNRVENFKNASELKR 486
+ + EN K + K+
Sbjct: 332 KENEKQKENEKQKEQEKQ 349
>FB|FBgn0040356 [details] [associations]
symbol:CG12498 species:7227 "Drosophila melanogaster"
[GO:0016570 "histone modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126 PROSITE:PS51360
SMART:SM00719 GO:GO:0005634 GO:GO:0003677 EMBL:AE014298
GO:GO:0006352 GO:GO:0016570 GeneTree:ENSGT00390000012493 KO:K15178
EMBL:AL138971 EMBL:BT031073 RefSeq:NP_570030.1 UniGene:Dm.26439
SMR:Q9V3X3 IntAct:Q9V3X3 MINT:MINT-1024782
EnsemblMetazoa:FBtr0070489 GeneID:31272 KEGG:dme:Dmel_CG12498
UCSC:CG12498-RA FlyBase:FBgn0040356 InParanoid:Q9V3X3 OMA:HELNDIS
OrthoDB:EOG42FR0Q GenomeRNAi:31272 NextBio:772788 Uniprot:Q9V3X3
Length = 261
Score = 116 (45.9 bits), Expect = 0.00039, P = 0.00039
Identities = 38/154 (24%), Positives = 71/154 (46%)
Query: 261 DDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRS 320
D ++ + + R ++ + P FE+ + GCFVRV + P +R+ V + E D
Sbjct: 55 DQLELLRLSRHRIGLLLVRPAFEQAVTGCFVRVNVSGQGELPDHRIAEVLGI--CELDFG 112
Query: 321 YKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSGRMPSKQDV 380
YK+E T L + + + + ++ VS+ +EEF+ W R+ N P +
Sbjct: 113 YKVEQIPTNVALRLRY--DDLEMQHEINDVSNLNFTQEEFELW-RDNCVNQAISPPTTHI 169
Query: 381 LEKKESIQKINTFVYSAATVKQMLQEKKSASSRP 414
L +K+ ++ N A + ++Q S + RP
Sbjct: 170 LTRKK-VELYNALQLEAKPLS-LIQRTFSFALRP 201
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.368 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 643 494 0.00083 119 3 11 23 0.44 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 608 (65 KB)
Total size of DFA: 266 KB (2141 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 49.63u 0.13s 49.76t Elapsed: 00:00:02
Total cpu time: 49.63u 0.13s 49.76t Elapsed: 00:00:02
Start: Tue May 21 04:05:36 2013 End: Tue May 21 04:05:38 2013