Query 006478
Match_columns 643
No_of_seqs 149 out of 251
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 23:51:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2175 Protein predicted to b 100.0 1.5E-92 3.3E-97 757.0 30.8 442 153-611 5-457 (458)
2 PF04802 SMK-1: Component of I 100.0 3.3E-64 7.1E-69 494.8 17.8 190 167-356 3-193 (193)
3 cd00835 RanBD Ran-binding doma 98.6 2.2E-07 4.7E-12 85.9 9.3 97 15-111 16-121 (122)
4 PF00638 Ran_BP1: RanBP1 domai 98.3 3.1E-06 6.7E-11 77.9 9.2 98 15-112 15-121 (122)
5 cd00837 EVH1 EVH1 (Enabled, Va 97.8 0.00015 3.3E-09 65.2 9.9 94 14-109 6-102 (104)
6 smart00160 RanBD Ran-binding d 97.7 0.00014 3E-09 68.2 9.0 95 15-109 25-129 (130)
7 PF00568 WH1: WH1 domain; Int 97.7 0.0002 4.4E-09 65.1 9.5 95 14-110 13-110 (111)
8 PF10508 Proteasom_PSMB: Prote 96.2 0.64 1.4E-05 53.1 21.8 201 358-592 75-278 (503)
9 smart00461 WH1 WASP homology r 95.9 0.051 1.1E-06 49.2 8.9 95 12-109 8-104 (106)
10 KOG2175 Protein predicted to b 95.9 0.057 1.2E-06 60.0 10.9 184 411-614 97-304 (458)
11 KOG2160 Armadillo/beta-catenin 95.7 1.4 3E-05 47.8 20.2 192 316-545 89-281 (342)
12 cd01207 Ena-Vasp Enabled-VASP- 93.7 0.5 1.1E-05 43.2 9.2 93 15-110 7-106 (111)
13 PF01602 Adaptin_N: Adaptin N 93.1 1.4 3.1E-05 49.7 13.9 230 361-626 115-371 (526)
14 PF03224 V-ATPase_H_N: V-ATPas 92.1 6.5 0.00014 42.0 16.7 253 277-564 23-287 (312)
15 KOG0166 Karyopherin (importin) 91.4 25 0.00054 40.4 20.7 242 309-592 195-436 (514)
16 PF01602 Adaptin_N: Adaptin N 91.1 9.8 0.00021 42.9 17.6 105 310-435 116-220 (526)
17 cd00020 ARM Armadillo/beta-cat 90.3 7.4 0.00016 33.9 12.7 112 309-435 8-119 (120)
18 PF06058 DCP1: Dcp1-like decap 89.7 1.5 3.3E-05 40.7 7.8 92 16-110 28-121 (122)
19 cd01205 WASP WASP-type EVH1 do 89.4 3.3 7E-05 37.6 9.4 91 16-108 11-102 (105)
20 PF14664 RICTOR_N: Rapamycin-i 89.2 6.5 0.00014 43.4 13.6 145 298-467 47-200 (371)
21 cd01206 Homer Homer type EVH1 87.0 4.4 9.4E-05 37.0 8.6 96 15-110 9-106 (111)
22 PF12460 MMS19_C: RNAPII trans 86.7 58 0.0013 36.3 22.5 240 280-556 109-404 (415)
23 PF04499 SAPS: SIT4 phosphatas 85.6 73 0.0016 36.5 23.7 293 291-604 4-394 (475)
24 PTZ00429 beta-adaptin; Provisi 80.2 1.5E+02 0.0032 36.0 27.6 159 346-545 119-284 (746)
25 PF05804 KAP: Kinesin-associat 74.8 2E+02 0.0043 34.7 24.7 110 355-467 285-423 (708)
26 PF10508 Proteasom_PSMB: Prote 73.2 1.8E+02 0.0039 33.4 24.7 170 350-549 192-369 (503)
27 cd00020 ARM Armadillo/beta-cat 72.9 25 0.00055 30.4 8.7 98 356-465 3-101 (120)
28 PF12348 CLASP_N: CLASP N term 72.7 1.1E+02 0.0023 30.6 15.9 186 318-544 15-204 (228)
29 COG5171 YRB1 Ran GTPase-activa 69.4 2.5 5.3E-05 41.4 1.4 42 15-56 95-137 (211)
30 KOG2085 Serine/threonine prote 67.4 20 0.00043 39.9 7.9 232 139-397 146-422 (457)
31 PF04499 SAPS: SIT4 phosphatas 67.1 23 0.0005 40.4 8.8 276 294-572 49-409 (475)
32 PLN03200 cellulose synthase-in 65.3 4.9E+02 0.011 35.4 22.3 224 307-571 57-285 (2102)
33 PF01603 B56: Protein phosphat 65.0 69 0.0015 35.8 11.9 37 361-397 337-378 (409)
34 PLN03200 cellulose synthase-in 64.1 5.2E+02 0.011 35.2 28.3 203 358-592 607-811 (2102)
35 PF02985 HEAT: HEAT repeat; I 63.4 12 0.00027 25.8 3.7 30 361-390 1-30 (31)
36 PF11707 Npa1: Ribosome 60S bi 61.3 2.4E+02 0.0052 30.4 17.0 219 298-545 48-302 (330)
37 PF11841 DUF3361: Domain of un 59.5 1.8E+02 0.0039 28.5 13.9 103 351-460 39-153 (160)
38 PF13251 DUF4042: Domain of un 58.5 1.8E+02 0.0038 29.1 12.2 159 375-548 1-176 (182)
39 PF04826 Arm_2: Armadillo-like 58.1 2.4E+02 0.0053 29.5 16.7 186 365-591 17-204 (254)
40 KOG0166 Karyopherin (importin) 55.8 3.8E+02 0.0083 31.1 20.6 202 353-586 145-346 (514)
41 PF13001 Ecm29: Proteasome sta 55.0 41 0.00088 38.6 8.1 129 296-435 300-442 (501)
42 KOG2724 Nuclear pore complex c 51.3 21 0.00045 39.7 4.7 96 13-110 384-485 (487)
43 PF12922 Cnd1_N: non-SMC mitot 51.1 45 0.00098 32.4 6.7 65 425-508 99-167 (171)
44 PF12755 Vac14_Fab1_bd: Vacuol 49.6 84 0.0018 27.9 7.6 67 361-434 28-94 (97)
45 cd03568 VHS_STAM VHS domain fa 49.1 2.4E+02 0.0053 26.8 11.1 107 312-435 3-109 (144)
46 COG5240 SEC21 Vesicle coat com 48.5 4.2E+02 0.009 31.4 14.3 141 278-435 230-403 (898)
47 PF05536 Neurochondrin: Neuroc 46.0 5.4E+02 0.012 30.0 18.3 205 308-549 5-216 (543)
48 smart00638 LPD_N Lipoprotein N 44.0 1.7E+02 0.0037 33.8 11.1 75 327-401 440-521 (574)
49 PF08569 Mo25: Mo25-like; Int 43.7 4.7E+02 0.01 28.6 15.8 170 350-545 66-282 (335)
50 PF10257 RAI16-like: Retinoic 41.5 65 0.0014 35.3 6.7 93 511-606 3-101 (353)
51 PF13646 HEAT_2: HEAT repeats; 41.2 1.3E+02 0.0027 24.9 7.2 55 362-431 33-87 (88)
52 PF14500 MMS19_N: Dos2-interac 40.7 4.4E+02 0.0096 27.6 12.5 164 365-569 4-168 (262)
53 KOG0168 Putative ubiquitin fus 40.1 3.3E+02 0.0072 33.5 12.3 247 297-570 360-653 (1051)
54 PF08167 RIX1: rRNA processing 40.1 2.6E+02 0.0056 27.1 10.0 125 363-513 28-153 (165)
55 PF00790 VHS: VHS domain; Int 38.9 3.3E+02 0.0072 25.4 12.0 109 310-435 6-117 (140)
56 KOG0864 Ran-binding protein RA 37.2 17 0.00038 37.0 1.4 42 15-56 62-105 (215)
57 KOG1293 Proteins containing ar 36.8 1.8E+02 0.0039 34.4 9.4 118 487-613 436-553 (678)
58 PRK09687 putative lyase; Provi 36.3 2.4E+02 0.0053 29.8 9.9 77 349-435 40-119 (280)
59 COG3479 Phenolic acid decarbox 36.1 19 0.00042 34.0 1.3 20 79-99 66-85 (175)
60 KOG2734 Uncharacterized conser 36.0 7.2E+02 0.016 28.5 17.8 199 350-572 166-373 (536)
61 PF08926 DUF1908: Domain of un 34.7 99 0.0022 32.8 6.4 50 170-230 192-241 (282)
62 PF12460 MMS19_C: RNAPII trans 33.7 7E+02 0.015 27.7 14.7 62 333-399 343-404 (415)
63 cd03569 VHS_Hrs_Vps27p VHS dom 33.0 4.3E+02 0.0093 25.0 11.8 109 310-435 5-113 (142)
64 PF06334 Orthopox_A47: Orthopo 32.8 31 0.00068 34.0 2.2 85 144-228 68-180 (244)
65 smart00185 ARM Armadillo/beta- 32.5 71 0.0015 22.4 3.7 36 510-545 5-40 (41)
66 KOG3671 Actin regulatory prote 32.0 41 0.0009 38.2 3.3 90 16-107 44-135 (569)
67 KOG1293 Proteins containing ar 31.9 6.4E+02 0.014 30.1 12.7 78 356-437 457-534 (678)
68 KOG0946 ER-Golgi vesicle-tethe 31.5 1.1E+03 0.023 29.1 18.2 252 283-556 141-409 (970)
69 KOG1991 Nuclear transport rece 31.4 1.1E+03 0.025 29.4 18.9 64 367-439 469-535 (1010)
70 PF10363 DUF2435: Protein of u 31.0 3.2E+02 0.007 24.0 8.2 76 308-395 3-78 (92)
71 cd03572 ENTH_epsin_related ENT 29.1 88 0.0019 29.2 4.5 73 517-592 38-119 (122)
72 PF04078 Rcd1: Cell differenti 28.8 1.8E+02 0.0039 30.7 7.2 78 492-570 65-149 (262)
73 PF12717 Cnd1: non-SMC mitotic 28.0 3.7E+02 0.008 26.1 9.0 74 307-401 24-105 (178)
74 KOG2171 Karyopherin (importin) 28.0 1.3E+03 0.029 29.2 19.2 273 283-612 178-486 (1075)
75 cd03561 VHS VHS domain family; 27.8 4.9E+02 0.011 24.1 11.2 90 333-435 20-111 (133)
76 KOG1824 TATA-binding protein-i 27.7 1.1E+02 0.0025 37.6 6.1 72 367-438 1014-1097(1233)
77 KOG1062 Vesicle coat complex A 27.7 3E+02 0.0065 33.5 9.3 127 294-439 249-382 (866)
78 cd00256 VATPase_H VATPase_H, r 27.3 9.6E+02 0.021 27.2 26.1 223 324-591 68-303 (429)
79 PF04388 Hamartin: Hamartin pr 26.8 5.5E+02 0.012 30.8 11.6 71 359-435 69-139 (668)
80 PF00790 VHS: VHS domain; Int 26.4 4.7E+02 0.01 24.4 9.1 76 284-360 62-140 (140)
81 smart00288 VHS Domain present 26.2 5E+02 0.011 24.1 9.1 76 284-360 57-133 (133)
82 KOG4224 Armadillo repeat prote 26.0 9.7E+02 0.021 26.9 16.4 182 354-570 202-386 (550)
83 PF13646 HEAT_2: HEAT repeats; 26.0 1.6E+02 0.0034 24.3 5.3 49 370-434 10-58 (88)
84 PF13251 DUF4042: Domain of un 26.0 5E+02 0.011 25.9 9.4 78 363-440 43-135 (182)
85 PF05804 KAP: Kinesin-associat 25.6 2.6E+02 0.0056 33.8 8.6 89 510-605 324-423 (708)
86 cd03568 VHS_STAM VHS domain fa 25.6 4.1E+02 0.0089 25.3 8.5 110 489-626 19-132 (144)
87 smart00185 ARM Armadillo/beta- 25.5 1.5E+02 0.0032 20.7 4.3 34 354-387 6-39 (41)
88 KOG2160 Armadillo/beta-catenin 25.4 6.5E+02 0.014 27.7 10.8 98 285-393 145-244 (342)
89 KOG1061 Vesicle coat complex A 25.2 6.9E+02 0.015 30.3 11.7 250 362-633 123-424 (734)
90 PF00514 Arm: Armadillo/beta-c 25.0 1.4E+02 0.0031 21.5 4.2 36 510-545 5-40 (41)
91 PF03810 IBN_N: Importin-beta 25.0 3.4E+02 0.0073 21.9 7.0 53 300-352 5-67 (77)
92 PF01347 Vitellogenin_N: Lipop 24.7 1.7E+02 0.0037 34.0 7.0 75 327-401 484-565 (618)
93 PF03224 V-ATPase_H_N: V-ATPas 23.3 4.2E+02 0.0091 28.1 9.1 104 487-592 70-180 (312)
94 PRK10167 hypothetical protein; 23.1 3.5E+02 0.0076 26.7 7.7 63 523-592 33-105 (169)
95 PF12231 Rif1_N: Rap1-interact 22.9 1E+03 0.022 26.1 12.2 168 420-619 59-233 (372)
96 PF08767 CRM1_C: CRM1 C termin 22.7 9.8E+02 0.021 25.7 13.2 105 322-435 132-243 (319)
97 PF15005 IZUMO: Izumo sperm-eg 22.7 2.7E+02 0.0058 27.3 6.7 93 221-318 3-100 (160)
98 PF14278 TetR_C_8: Transcripti 22.5 2.2E+02 0.0048 22.6 5.4 66 298-368 6-75 (77)
99 PF00514 Arm: Armadillo/beta-c 21.7 1.9E+02 0.0041 20.8 4.3 34 354-387 6-39 (41)
100 PF13513 HEAT_EZ: HEAT-like re 21.4 2.4E+02 0.0051 21.5 5.0 53 375-433 2-54 (55)
101 PF12783 Sec7_N: Guanine nucle 21.1 7.2E+02 0.016 23.6 10.6 79 352-435 65-145 (168)
102 PF12719 Cnd3: Nuclear condens 21.0 9.8E+02 0.021 25.1 12.8 103 323-439 40-146 (298)
103 PF06371 Drf_GBD: Diaphanous G 20.8 3.7E+02 0.008 25.7 7.4 33 356-388 154-186 (187)
104 PF12333 Ipi1_N: Rix1 complex 20.8 5.7E+02 0.012 22.7 8.0 39 362-400 13-52 (102)
105 PF06371 Drf_GBD: Diaphanous G 20.7 3.8E+02 0.0082 25.7 7.5 91 494-590 85-185 (187)
106 cd03567 VHS_GGA VHS domain fam 20.6 7.3E+02 0.016 23.5 11.7 109 310-435 2-115 (139)
107 cd03561 VHS VHS domain family; 20.5 3.5E+02 0.0076 25.1 6.9 74 488-571 18-91 (133)
108 smart00222 Sec7 Sec7 domain. D 20.4 6.4E+02 0.014 24.9 9.1 73 141-213 34-106 (187)
109 PF12348 CLASP_N: CLASP N term 20.4 8.4E+02 0.018 24.1 12.5 30 363-392 97-126 (228)
110 KOG2956 CLIP-associating prote 20.3 7.6E+02 0.016 28.5 10.3 87 298-393 310-405 (516)
No 1
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-92 Score=756.97 Aligned_cols=442 Identities=44% Similarity=0.746 Sum_probs=419.2
Q ss_pred ChhhHHHHHHHHhcchHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHhhhhcchhHhHHhhhcccCCCCC
Q 006478 153 GIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVP 232 (643)
Q Consensus 153 ~~~~r~~l~~~i~~~~~Yi~kL~~lF~~~Edle~~~~L~~L~~Ivk~iillNd~~i~E~llsDe~i~~vvG~LEYDp~~p 232 (643)
++..|++.+.++ ++++||++|+++|+.|||++++++||++++|+|+|+++|...|+|.|++|++||+++|||||||++|
T Consensus 5 ~~~~r~~~~~~i-e~e~~f~~Li~lF~~Ced~e~~d~L~~l~~Iik~i~~ln~~~iLe~~~~d~~im~v~g~lEydp~~~ 83 (458)
T KOG2175|consen 5 TDQRREKLVLAL-ENENYFQKLIELFHTCEDLENTDGLHHLFSIIKNIFLLNKSDILESIFDDECIMDVIGCLEYDPAVP 83 (458)
T ss_pred cHHHHHHHHHHH-hcchHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCchHHHHHhccccccccccccccCccCC
Confidence 345667666555 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHhhhhcCCceeeeecCChHHHHHHHhhheeceeeehhcc--cccchhhHHhhHHHHHhhHHHHHHHhhcCHHHH
Q 006478 233 HVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLA--RVLDEATVANLNSIIHGNNAYVVSLLKDDSTFI 310 (643)
Q Consensus 233 ~~~~HR~fL~~~~~FkeVVpi~d~~i~~kIHqtyRlqYLKDVVL~--r~lDD~t~s~LnS~I~fN~~eIV~~Lq~d~~fL 310 (643)
++++||+|+...++|||||||.||++++|||||||+|||||+||| +++||+++++++|+||+|+++||++||+|..|+
T Consensus 84 ~~k~HR~~l~~~~~f~e~ipi~dp~ll~kIhqt~r~q~l~d~vl~~~~~~~~a~~~~l~s~i~~~~~~ii~~lqed~~~l 163 (458)
T KOG2175|consen 84 QSKKHREFLSLLAKFKEVIPISDPELLAKIHQTFRVQYLKDVVLPEPGVFDEATGNTLNSFIFFNKVNIVSLLQEDEKFL 163 (458)
T ss_pred ChhhhHHHHHhhccceeeeecCCHHHHHHHHHHHHHHHhheeeecCCcchhcchhHHHHHHHHHhhhhhhhhhhcCchHH
Confidence 988899999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhc
Q 006478 311 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 390 (643)
Q Consensus 311 ~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~ 390 (643)
.+||+++++++++.++|++++.|+||+|.++|++|++.|.+||++|++.||++++++++..+|.++|.+++||+..++|+
T Consensus 164 ~eLf~~l~~~~t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~~~~di~~~~ve~ 243 (458)
T KOG2175|consen 164 IELFARLRSESTDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRSAATDILARLVEM 243 (458)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCCcc-----hHHHHHHHHhcCCChhH--HHHHHHHHHHhcCCCCCCch--hhhHHHHHHHHhhHHHHH
Q 006478 391 DPNLLRSYVVRQEGIP-----LLGLLVKGMITDFGEDM--HCQFLEILRSLLDSYTLSGA--QRDTIIEIFYEKHLGQLI 461 (643)
Q Consensus 391 dp~lvR~~i~~q~~~~-----Ll~~Li~~ll~d~~~gl--~~Q~~e~lk~LLDp~~~~~~--e~d~fl~~FY~~~~~~L~ 461 (643)
+|.++|++...++..+ +++.++++++++.++.+ .+|++.+++++|||++|.++ ++.+|+++||+.|++.+.
T Consensus 244 ~~~~i~~~~~~~~~~~~~~~~~~nl~~s~~l~d~d~~~~~~s~~~~i~~tll~~~~~~~~~~~~se~l~~~~~~c~~~~~ 323 (458)
T KOG2175|consen 244 SPSMIRSFTLGEALDPDDEKLLLNLAISHMLEDFDPELSGASQLMLILSTLLDPENMLTLASEKSEFLNFFYKHCMHSLS 323 (458)
T ss_pred CHHHHHHHHHHhhcCchhhHHHHHHHHHhhccccCccccchHHHHHHHHHhhCccccCCccchhHHHhhhhhccccccCC
Confidence 9999999998875444 89999999999888855 48999999999999999985 899999999999999998
Q ss_pred HHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHH
Q 006478 462 DVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFV 541 (643)
Q Consensus 462 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~ 541 (643)
+|....... .++++.+..++|++|||+.||+|+||+|++++++++||+.|+++++++|+++|+||.
T Consensus 324 ~p~~~~~~s--------------~~sa~~~~v~~~~l~fc~~~~s~si~n~~~~~d~~~~vlvl~~s~~~~l~~~a~~~~ 389 (458)
T KOG2175|consen 324 APLVGNTSS--------------NQSAQNLSVILELLTFCVEHHSFSIKNYIVSSDLLNKVLVLMSSKHSFLVLGALRYL 389 (458)
T ss_pred Ccchhhccc--------------ccccchhhhhhhhhhHHHHhcccccccHhhcchhhccceehhccccHHHHHHHHHhh
Confidence 887653211 146778899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHHHHHHHhcChHHHHHHHHHHhHhccc
Q 006478 542 RTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLV 611 (643)
Q Consensus 542 R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~Ir~enik~Li~hlve~y~~~l~ 611 (643)
|.++.++|++|+||++++ ++|+++.|.+||.||||+|||++++|||||.||+|+|++|+|++||+.++
T Consensus 390 ~~~~~L~d~~~~~~ivk~--~~p~~~~~~~n~trynll~s~~l~l~efi~~e~~k~l~~~~v~~~~~~~~ 457 (458)
T KOG2175|consen 390 RKIPILEDEKYNKYIVKS--FKPVIDGFIENGTRYNLLNSAVLELFEFIRVEDIKPLLSYIVENFQNGLA 457 (458)
T ss_pred hccchhchHHHHHHHhhc--cccchhhHhhcCChhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhhcc
Confidence 999999999999999999 99999999999999999999999999999999999999999999999875
No 2
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=100.00 E-value=3.3e-64 Score=494.84 Aligned_cols=190 Identities=53% Similarity=0.956 Sum_probs=186.8
Q ss_pred chHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHhhhhcchhHhHHhhhcccCCCCCcc-cchHHhhhhcC
Q 006478 167 DQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHV-QHHRNFLKEHV 245 (643)
Q Consensus 167 ~~~Yi~kL~~lF~~~Edle~~~~L~~L~~Ivk~iillNd~~i~E~llsDe~i~~vvG~LEYDp~~p~~-~~HR~fL~~~~ 245 (643)
+++||+||+++|++||+++|+++||+||+|+|+|+++|+++|+|+|++||+||+|||||||||++|++ ++||+||++++
T Consensus 3 ~~~Yi~kL~~lF~~~E~~~~~~~L~~l~~Ivk~li~ln~~~i~e~llsde~i~~vvG~LEYDp~~~~~ka~hR~fL~~~~ 82 (193)
T PF04802_consen 3 NENYIKKLLDLFHQCEDLEDLEGLHLLFDIVKTLILLNDPEIFEILLSDENIMDVVGILEYDPEFPQPKANHREFLKEKA 82 (193)
T ss_pred chHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCchHHHHHhchHHHHHHhhhhccCCcccccccchHHHHHhCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999986 59999999999
Q ss_pred CceeeeecCChHHHHHHHhhheeceeeehhcccccchhhHHhhHHHHHhhHHHHHHHhhcCHHHHHHHHHHhCCCCCcHH
Q 006478 246 VFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEE 325 (643)
Q Consensus 246 ~FkeVVpi~d~~i~~kIHqtyRlqYLKDVVL~r~lDD~t~s~LnS~I~fN~~eIV~~Lq~d~~fL~eLf~~l~~~~~~~~ 325 (643)
+|||||||+|+++++|||||||+||||||||||++||+++|+|||+|+|||++||++||+|++||++||+++++++++.+
T Consensus 83 ~FkeVIpi~~~~l~~kIhqtyRlqYLkDvvL~r~lDd~~~s~L~s~I~~n~~~Iv~~l~~d~~fL~~Lf~~l~~~~~~~~ 162 (193)
T PF04802_consen 83 KFKEVIPIPDPELLSKIHQTYRLQYLKDVVLPRFLDDNTFSTLNSLIFFNQVEIVNMLQDDENFLEELFAILKDPSTSDE 162 (193)
T ss_pred CCceeeecCCHHHHHHHHHHHhHHHHHHHHcccccccHHHHHHHHHHHHhHHHHHHHHHhCHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhccChhhHHHHHHHH
Q 006478 326 SKKNLVHFLHEFCGLSKSLQMVQQLRLFRDL 356 (643)
Q Consensus 326 ~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L 356 (643)
+|+|+++||||||++||++|+++|.+||++|
T Consensus 163 ~r~d~v~fL~e~c~~ak~lq~~~r~~f~~~L 193 (193)
T PF04802_consen 163 RRRDGVKFLHEFCSLAKNLQPQSRSEFFKTL 193 (193)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHhcC
Confidence 9999999999999999999999999999986
No 3
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=98.59 E-value=2.2e-07 Score=85.89 Aligned_cols=97 Identities=19% Similarity=0.396 Sum_probs=83.5
Q ss_pred CceEEEEeCC-CCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCccccccc--CeEEEecCCCc-----
Q 006478 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWRDPEY----- 86 (643)
Q Consensus 15 ~RVKvY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQq--eTlIvW~e~~~----- 86 (643)
.|.|+|.+.+ .+.|.++|+|.+.+-.......+.|++|.+.....+|.+.|.++-.|+.++ +.-++|+-.+.
T Consensus 16 ~r~KLy~~~~~~~~WkerG~G~lki~~~k~~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~~k~~~~~~~d~~~~~~ 95 (122)
T cd00835 16 VRAKLYRFDDETKEWKERGVGELKILKHKDTGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNSDKSIVWAAMDFSDDEP 95 (122)
T ss_pred EEeEEEEEcCCCCCCeeceEEEEEEEEcCCCCcEEEEEEeCCccEEEEeeEecCCcEEeecCCCCcEEEEEeeecCCCCC
Confidence 5899999974 378999999999988766667899999999988999999999999999999 89999963221
Q ss_pred -cccccccccCccchhHHHHHHHHHh
Q 006478 87 -STELALSFQEPTGCSYIWDNICNVQ 111 (643)
Q Consensus 87 -~~dlALSFQe~~GC~~iw~~I~~vQ 111 (643)
-.-+++.|..++.|+++++.|.++|
T Consensus 96 ~~~~~~lrfk~~~~a~~f~~~~~~~~ 121 (122)
T cd00835 96 KPETFAIRFKTEEIADEFKEAIEEAK 121 (122)
T ss_pred cEEEEEEEECCHHHHHHHHHHHHHhh
Confidence 1349999999999999999998887
No 4
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=98.30 E-value=3.1e-06 Score=77.94 Aligned_cols=98 Identities=17% Similarity=0.385 Sum_probs=77.1
Q ss_pred CceEEEEeC-CCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCccccccc--CeEEEec-----CCC-
Q 006478 15 QRVKVYRLN-DDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWR-----DPE- 85 (643)
Q Consensus 15 ~RVKvY~L~-~~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQq--eTlIvW~-----e~~- 85 (643)
.|+|+|.+. +++.|.++|+|.+............|++|.+..+..+|.++|.++..|+..+ +.-++|+ |.+
T Consensus 15 ~r~Kl~~~~~~~~~W~erG~G~l~i~~~k~~~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 94 (122)
T PF00638_consen 15 VRAKLYRFDKEDKEWKERGVGTLKILKHKETGKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSEKSLVWTAIDYADEEG 94 (122)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEETTSCEEEEEEEETTTTEEEEEEE--TTC-EEESTTTTTEEEEEEEECTTSSS
T ss_pred EEEEEEEEeCCCCCccccceeEEEEEEccCCcceEEEEEEcccCceeEEEEecCCceecccccCCcEEEEEeccccCCCC
Confidence 589999995 3689999999999988766667789999999999999999999999887666 4578883 221
Q ss_pred ccccccccccCccchhHHHHHHHHHhh
Q 006478 86 YSTELALSFQEPTGCSYIWDNICNVQR 112 (643)
Q Consensus 86 ~~~dlALSFQe~~GC~~iw~~I~~vQ~ 112 (643)
.-.-+++.|..++-++++.+.|.+.|.
T Consensus 95 ~~~~~~irf~~~e~a~~f~~~i~e~~~ 121 (122)
T PF00638_consen 95 KPETYLIRFKSAEDADEFKKKIEEAKE 121 (122)
T ss_dssp EEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCHHHHHHHHHHHHHHhc
Confidence 124689999999999999999988875
No 5
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=97.80 E-value=0.00015 Score=65.20 Aligned_cols=94 Identities=19% Similarity=0.313 Sum_probs=81.0
Q ss_pred CCceEEEEeCC-CCCceec--cceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCcccccccCeEEEecCCCccccc
Q 006478 14 MQRVKVYRLND-DGKWDDQ--GTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTEL 90 (643)
Q Consensus 14 ~~RVKvY~L~~-~~~W~D~--GTG~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~e~~~~~dl 90 (643)
.-||.||.-++ .+.|.-. |+|-+............|.+++..++..+++..|.++-.|.+...+..+|.+.+ .-+
T Consensus 6 ~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~~~~Fh~w~~~~--~~~ 83 (104)
T cd00837 6 TAVAQVYTADPSTGKWVPASGGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYKGLKYTQATPFFHQWEDDN--CVY 83 (104)
T ss_pred EEEEEEEEECCCCCceEECCCCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecCCcEEeecCCeEEEEEcCC--cEE
Confidence 35899999965 4899999 888888776555566889999999999999999999999999999999999985 569
Q ss_pred cccccCccchhHHHHHHHH
Q 006478 91 ALSFQEPTGCSYIWDNICN 109 (643)
Q Consensus 91 ALSFQe~~GC~~iw~~I~~ 109 (643)
+|+|++.+.+....+.+++
T Consensus 84 GL~F~se~eA~~F~~~v~~ 102 (104)
T cd00837 84 GLNFASEEEAAQFRKKVLE 102 (104)
T ss_pred EEeeCCHHHHHHHHHHHHh
Confidence 9999999999988877764
No 6
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=97.74 E-value=0.00014 Score=68.17 Aligned_cols=95 Identities=13% Similarity=0.285 Sum_probs=75.0
Q ss_pred CceEEEEeCC-CCCceeccceEEEEEEeCCC-cceeEEEEecCCCcceeEeecCCCcccccccC--eEEEecCCCc----
Q 006478 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMERS-EELCLFVIDEEDNETILLHRISPDDIYRKQED--TIISWRDPEY---- 86 (643)
Q Consensus 15 ~RVKvY~L~~-~~~W~D~GTG~~s~~~~e~~-~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqe--TlIvW~e~~~---- 86 (643)
.|.|+|.+.+ .+.|.++|+|.+..-..... ....|++|.+.....+|.+.|.++-.|+.... .-.+|+-.+.
T Consensus 25 ~r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~~~~~~~~~~~~~~~~~~~~d~~d~~ 104 (130)
T smart00160 25 ARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFKSMTLKPLAGSNRALKWTPEDFADDI 104 (130)
T ss_pred EEeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecCCcEEeecCCCcceEEEeeeecCCCC
Confidence 5999999964 57899999999987654444 56899999999889999999999999987653 4667843221
Q ss_pred --cccccccccCccchhHHHHHHHH
Q 006478 87 --STELALSFQEPTGCSYIWDNICN 109 (643)
Q Consensus 87 --~~dlALSFQe~~GC~~iw~~I~~ 109 (643)
-.-+++-|-.++.++++++.|.+
T Consensus 105 ~~~~~~~irfk~~e~a~~f~~~~~e 129 (130)
T smart00160 105 PKLVLYAVRFKTKEEADSFKNIFEE 129 (130)
T ss_pred CceEEEEEEeCCHHHHHHHHHHHHh
Confidence 13489999999999998887653
No 7
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=97.72 E-value=0.0002 Score=65.09 Aligned_cols=95 Identities=16% Similarity=0.328 Sum_probs=80.3
Q ss_pred CCceEEEEeC--CCCCcee-ccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCcccccccCeEEEecCCCccccc
Q 006478 14 MQRVKVYRLN--DDGKWDD-QGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTEL 90 (643)
Q Consensus 14 ~~RVKvY~L~--~~~~W~D-~GTG~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~e~~~~~dl 90 (643)
.-+|.||..+ .+++|.- .|+|-++...........|.+.+-.++..+++..|.++-.|+++..+..+|.+.+ .-+
T Consensus 13 ~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~~~~Fh~f~~~~--~~~ 90 (111)
T PF00568_consen 13 TAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYPGFVYTKARPFFHQFEDDD--CVY 90 (111)
T ss_dssp EEEEEEEEEETTTSESEEESSSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESTT-EEEEESSSEEEEEETT--CEE
T ss_pred EEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecCCCEEEeCCCcEEEEEeCC--eEE
Confidence 3588999994 2445999 9999998876554566778888888999999999999999999999999999986 489
Q ss_pred cccccCccchhHHHHHHHHH
Q 006478 91 ALSFQEPTGCSYIWDNICNV 110 (643)
Q Consensus 91 ALSFQe~~GC~~iw~~I~~v 110 (643)
+|+|++.+-+....+.+++.
T Consensus 91 GLnF~se~eA~~F~~~v~~~ 110 (111)
T PF00568_consen 91 GLNFASEEEADQFYKKVQEA 110 (111)
T ss_dssp EEEESSHHHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHhcc
Confidence 99999999999999888764
No 8
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.19 E-value=0.64 Score=53.14 Aligned_cols=201 Identities=11% Similarity=0.138 Sum_probs=141.6
Q ss_pred hcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 006478 358 NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS 437 (643)
Q Consensus 358 ~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp 437 (643)
..++.+.+..+|.++++.+|..++-.+..++.++...+.- + . +..++..++..+ .+.|.++......+|+.|...
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~-~-~--~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQL-L-V--DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHH-h-c--CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCC
Confidence 4566788899999999999999999888888888664432 1 1 344565655544 778999999999999999754
Q ss_pred CCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhcc
Q 006478 438 YTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNN 517 (643)
Q Consensus 438 ~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~ 517 (643)
+. -++..|+.....-+..++.. .++.+-..++|+++-...++... -.++...+
T Consensus 150 ~~--------~~~~l~~~~~~~~L~~l~~~------------------~~~~vR~Rv~el~v~i~~~S~~~-~~~~~~sg 202 (503)
T PF10508_consen 150 PE--------GLEQLFDSNLLSKLKSLMSQ------------------SSDIVRCRVYELLVEIASHSPEA-AEAVVNSG 202 (503)
T ss_pred ch--------hHHHHhCcchHHHHHHHHhc------------------cCHHHHHHHHHHHHHHHhcCHHH-HHHHHhcc
Confidence 32 12223333222222223221 01223346778877776555544 46777788
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHHhHh--CC-CCcchHHHHHHHHHHHHh
Q 006478 518 VVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVAN--GN-RYNLLNSAVLELFEYIRK 592 (643)
Q Consensus 518 l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~n--~~-r~NLlnSa~Lelfe~Ir~ 592 (643)
++.+++..+...+-.+++.|+-.+..+...+.. ..||.+.++++-+.+.+... .+ -..++=...+.||..+..
T Consensus 203 ll~~ll~eL~~dDiLvqlnalell~~La~~~~g--~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 203 LLDLLLKELDSDDILVQLNALELLSELAETPHG--LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH--HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 999999999999999999999999998884444 79999999999999998643 12 345666777788888876
No 9
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=95.87 E-value=0.051 Score=49.17 Aligned_cols=95 Identities=14% Similarity=0.255 Sum_probs=74.6
Q ss_pred CCCCceEEEEeCCCCCceeccce-EEEEEEeCCCcceeEEEEecCCC-cceeEeecCCCcccccccCeEEEecCCCcccc
Q 006478 12 NPMQRVKVYRLNDDGKWDDQGTG-HVTVDSMERSEELCLFVIDEEDN-ETILLHRISPDDIYRKQEDTIISWRDPEYSTE 89 (643)
Q Consensus 12 ~~~~RVKvY~L~~~~~W~D~GTG-~~s~~~~e~~~~~~l~V~sE~d~-~~lL~~~I~~~~~YqrQqeTlIvW~e~~~~~d 89 (643)
.+.--|-+|.=.. +.|.-.|+| -+............+-|.+...+ ..+++..|.++-.|.+.-.+.-+|.+.+ .-
T Consensus 8 ~~~avV~~y~~~~-~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~~vv~e~ely~~~~y~~~~~~Fh~f~~~~--~~ 84 (106)
T smart00461 8 LARAVVQLYDADT-KKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQDKVIWNQELYKNFKYNQATPTFHQWADDK--CV 84 (106)
T ss_pred EEEEEEEEEeCCC-CCeEECCCCCEEEEEEEecCCeEEEEEEEecCCCeEEEEEeccCCCEEeecCCceEEEEeCC--eE
Confidence 3445677888764 469999999 55544433345566777777766 7889999999999999999999999854 67
Q ss_pred ccccccCccchhHHHHHHHH
Q 006478 90 LALSFQEPTGCSYIWDNICN 109 (643)
Q Consensus 90 lALSFQe~~GC~~iw~~I~~ 109 (643)
..|+|++.+.+....+.+++
T Consensus 85 ~GLnF~se~EA~~F~~~v~~ 104 (106)
T smart00461 85 YGLNFASEEEAKKFRKKVLK 104 (106)
T ss_pred EEeecCCHHHHHHHHHHHHh
Confidence 99999999999998887765
No 10
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]
Probab=95.86 E-value=0.057 Score=60.02 Aligned_cols=184 Identities=14% Similarity=0.126 Sum_probs=118.7
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHhc--C---CC--CCCch-----------hhhHHHHHHHHhh--HHHHHHHHHhcCCC
Q 006478 411 LVKGMITDFGEDMHCQFLEILRSLL--D---SY--TLSGA-----------QRDTIIEIFYEKH--LGQLIDVITASCPQ 470 (643)
Q Consensus 411 Li~~ll~d~~~gl~~Q~~e~lk~LL--D---p~--~~~~~-----------e~d~fl~~FY~~~--~~~L~~pl~~~~~~ 470 (643)
..+..+...+|++..++-++.|+.. | |+ ....+ .+..+++++++.. +..||+-+...
T Consensus 97 ~f~e~ipi~dp~ll~kIhqt~r~q~l~d~vl~~~~~~~~a~~~~l~s~i~~~~~~ii~~lqed~~~l~eLf~~l~~~--- 173 (458)
T KOG2175|consen 97 KFKEVIPISDPELLAKIHQTFRVQYLKDVVLPEPGVFDEATGNTLNSFIFFNKVNIVSLLQEDEKFLIELFARLRSE--- 173 (458)
T ss_pred cceeeeecCCHHHHHHHHHHHHHHHhheeeecCCcchhcchhHHHHHHHHHhhhhhhhhhhcCchHHHHHHHHhcCC---
Confidence 4455566789999999998777643 4 21 11111 3446667777663 33343333220
Q ss_pred cccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccH---HHHHHH-HhhcccchhhHHHHHHHHHHhc
Q 006478 471 EGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNV---VDKVLL-LTRRREKYLVVAAVRFVRTILS 546 (643)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l---~~kv~~-Ll~~~~k~L~LaAlRf~R~ii~ 546 (643)
. ...++.+.+.|+|+-.|...+.|.+..+..+...-+ +..++. .++..++.++.+|.+-+.+++.
T Consensus 174 -~----------t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~~~~di~~~~ve 242 (458)
T KOG2175|consen 174 -S----------TDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRSAATDILARLVE 242 (458)
T ss_pred -c----------hHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHHHh
Confidence 0 012355678999999999999999988775443332 333332 2445588899999999888885
Q ss_pred CChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHHHHHHHhcChHHHHHHHHHHhHhcccccc
Q 006478 547 RHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFE 614 (643)
Q Consensus 547 l~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~Ir~enik~Li~hlve~y~~~l~~i~ 614 (643)
.+=- ++++...+-..+.- .+..--|+++|+.++.+|+-+.+..+.+..+.-..+.+.+....
T Consensus 243 ~~~~-----~i~~~~~~~~~~~~-~~~~~~nl~~s~~l~d~d~~~~~~s~~~~i~~tll~~~~~~~~~ 304 (458)
T KOG2175|consen 243 MSPS-----MIRSFTLGEALDPD-DEKLLLNLAISHMLEDFDPELSGASQLMLILSTLLDPENMLTLA 304 (458)
T ss_pred cCHH-----HHHHHHHHhhcCch-hhHHHHHHHHHhhccccCccccchHHHHHHHHHhhCccccCCcc
Confidence 4433 33332222222222 33345689999999999999999999888888888888887764
No 11
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=1.4 Score=47.80 Aligned_cols=192 Identities=18% Similarity=0.145 Sum_probs=124.8
Q ss_pred HhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHH
Q 006478 316 RLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLL 395 (643)
Q Consensus 316 ~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lv 395 (643)
.+.+++.+.++|-++.-=|.++|.=-.| -..|++.|.+..+--.+.+.+..+|-.|+.++.+++..+|-..
T Consensus 89 ~~~~~s~~le~ke~ald~Le~lve~iDn---------Andl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Q 159 (342)
T KOG2160|consen 89 ILNSSSVDLEDKEDALDNLEELVEDIDN---------ANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQ 159 (342)
T ss_pred ccCcccCCHHHHHHHHHHHHHHHHhhhh---------HHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 3456667777787777777777653322 2356777766555559999999999999999999999999854
Q ss_pred HHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCccccc
Q 006478 396 RSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQ 475 (643)
Q Consensus 396 R~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~ 475 (643)
- .+++.. .+..|+..+-.+.+.+.+.++.-|+-.|+=.+... .+.|+ =-+....|...+.++
T Consensus 160 e-~v~E~~---~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g---~~~fl---~~~G~~~L~~vl~~~-------- 221 (342)
T KOG2160|consen 160 E-QVIELG---ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPG---QDEFL---KLNGYQVLRDVLQSN-------- 221 (342)
T ss_pred H-HHHHcc---cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHH---HHHHH---hcCCHHHHHHHHHcC--------
Confidence 4 344422 56777888888888999999999999998433211 11222 223344454444321
Q ss_pred ccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHH-HHhhcccchhhHHHHHHHHHHh
Q 006478 476 SASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVL-LLTRRREKYLVVAAVRFVRTIL 545 (643)
Q Consensus 476 ~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~-~Ll~~~~k~L~LaAlRf~R~ii 545 (643)
.+...+......|++..+++|.+.-. +++.-...+++ .+..+-+-...-+|++..=+.+
T Consensus 222 ---------~~~~~lkrK~~~Ll~~Ll~~~~s~~d--~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 222 ---------NTSVKLKRKALFLLSLLLQEDKSDED--IASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred ---------CcchHHHHHHHHHHHHHHHhhhhhhh--HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 12334556778899999999888655 44444445544 3444555555666666554433
No 12
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=93.72 E-value=0.5 Score=43.24 Aligned_cols=93 Identities=19% Similarity=0.311 Sum_probs=68.8
Q ss_pred CceEEEEeCC-CCCceeccce-----EEEEEEeCCCcceeEEEEe-cCCCcceeEeecCCCcccccccCeEEEecCCCcc
Q 006478 15 QRVKVYRLND-DGKWDDQGTG-----HVTVDSMERSEELCLFVID-EEDNETILLHRISPDDIYRKQEDTIISWRDPEYS 87 (643)
Q Consensus 15 ~RVKvY~L~~-~~~W~D~GTG-----~~s~~~~e~~~~~~l~V~s-E~d~~~lL~~~I~~~~~YqrQqeTlIvW~e~~~~ 87 (643)
-|+.|..-++ .+.|.--|.| .|++-+. ...+.+.+|-. -.++..+++..|.++-.|.+.--+...|.+.+
T Consensus 7 ~rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~-~~~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k~~p~Fh~w~~~~-- 83 (111)
T cd01207 7 ARASVMVYDDSNKKWVPAGGGSQGFSRVQIYHH-PRNNTFRVVGRKLQDHQVVINCAIVKGLKYNQATPTFHQWRDAR-- 83 (111)
T ss_pred EEEEeeEEcCCCCcEEcCCCCCCCcceEEEEEc-CCCCEEEEEEeecCCCcEEEEEEecCCceeeecCCcceeeecCC--
Confidence 3566666654 5679998885 4554333 33445555433 34678899999999999999999999999986
Q ss_pred ccccccccCccchhHHHHHHHHH
Q 006478 88 TELALSFQEPTGCSYIWDNICNV 110 (643)
Q Consensus 88 ~dlALSFQe~~GC~~iw~~I~~v 110 (643)
+-..|+|+..+.+...-+.|.+.
T Consensus 84 ~v~GLnF~Se~eA~~F~~~v~~A 106 (111)
T cd01207 84 QVYGLNFGSKEDATMFASAMLSA 106 (111)
T ss_pred eEEeeccCCHHHHHHHHHHHHHH
Confidence 78899999999998876665544
No 13
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.11 E-value=1.4 Score=49.71 Aligned_cols=230 Identities=13% Similarity=0.159 Sum_probs=131.8
Q ss_pred cHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHh-cCCCC
Q 006478 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL-LDSYT 439 (643)
Q Consensus 361 ll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~L-LDp~~ 439 (643)
+++.+...+.++++.+|..|+--+..+...+|+.++.. ++..+.+ ++.|.|+|+......++..+ -.|..
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~--------~~~~l~~-lL~d~~~~V~~~a~~~l~~i~~~~~~ 185 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE--------LIPKLKQ-LLSDKDPSVVSAALSLLSEIKCNDDS 185 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG--------HHHHHHH-HTTHSSHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH--------HHHHHhh-hccCCcchhHHHHHHHHHHHccCcch
Confidence 46677888899999999999999999999999987751 3444444 45899999988888888777 22211
Q ss_pred CCchhhhHHHHHHHHhh-------HHHHHHHHHhcCCCcccccccCCCCcccCCc---HHHHHHHH------------HH
Q 006478 440 LSGAQRDTIIEIFYEKH-------LGQLIDVITASCPQEGIAQSASSGGRVESTK---PEILSNIC------------EL 497 (643)
Q Consensus 440 ~~~~e~d~fl~~FY~~~-------~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~---~~ll~~l~------------eL 497 (643)
.. .++..+|... .+|+...++....... . ..... ..++..+. |.
T Consensus 186 ~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~-~--------~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~ 251 (526)
T PF01602_consen 186 YK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA-P--------MEPEDADKNRIIEPLLNLLQSSSPSVVYEA 251 (526)
T ss_dssp HT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST-S--------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc-c--------CChhhhhHHHHHHHHHHHhhccccHHHHHH
Confidence 00 3444444442 2333322222100000 0 00001 11222222 22
Q ss_pred HHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHHhHhCCCCc
Q 006478 498 LCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYN 577 (643)
Q Consensus 498 L~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~n~~r~N 577 (643)
...+..-.+. .-+...++..+.+++.+++.-++..|++.+..+.... . ..++.+-+..|.-..+.+.
T Consensus 252 ~~~i~~l~~~----~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-----~----~~v~~~~~~~~~l~~~~d~ 318 (526)
T PF01602_consen 252 IRLIIKLSPS----PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-----P----PAVFNQSLILFFLLYDDDP 318 (526)
T ss_dssp HHHHHHHSSS----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-----H----HHHGTHHHHHHHHHCSSSH
T ss_pred HHHHHHhhcc----hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-----c----hhhhhhhhhhheecCCCCh
Confidence 2222211111 1144556677777888888889999999999887665 1 2223444444443345556
Q ss_pred chHHHHHHHHHHHH-hcChHHHHHHHHHHhHhc---cccccchhhHHHHHHhh
Q 006478 578 LLNSAVLELFEYIR-KENLKSLVKYIVDSFWNQ---LVNFEYLASLHSFKVKY 626 (643)
Q Consensus 578 LlnSa~Lelfe~Ir-~enik~Li~hlve~y~~~---l~~i~yv~tf~~l~~ry 626 (643)
=+-...++++-.+- .+|++.++..+.+.-.+. =-....+.+...+..+|
T Consensus 319 ~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 319 SIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 67777777776664 589999998888544222 01224566666676666
No 14
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.13 E-value=6.5 Score=41.96 Aligned_cols=253 Identities=17% Similarity=0.292 Sum_probs=126.6
Q ss_pred ccccchhhHHhhHHHHHhhHHHHHHHhhcCHH----HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHH
Q 006478 277 ARVLDEATVANLNSIIHGNNAYVVSLLKDDST----FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRL 352 (643)
Q Consensus 277 ~r~lDD~t~s~LnS~I~fN~~eIV~~Lq~d~~----fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~ 352 (643)
++.+++...+.+..+=-.....=.+.+.++.. .+-.|++.. +...+-.+-++.++-+++.-.+ .+..+
T Consensus 23 a~~is~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~---~~~~d~v~yvL~li~dll~~~~-----~~~~~ 94 (312)
T PF03224_consen 23 AGLISEEDLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL---SSNDDTVQYVLTLIDDLLSDDP-----SRVEL 94 (312)
T ss_dssp TTSS-HHHHHHHHHHHHHHH-------------------HHHHHH------HHHHHHHHHHHHHHHH-SS-----SSHHH
T ss_pred hCCCCHHHHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc---cCcHHHHHHHHHHHHHHHhcCH-----HHHHH
Confidence 45677777766665544333332223443331 222344433 2344555666667777766543 45556
Q ss_pred HHHHHhcC---cHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHH
Q 006478 353 FRDLMNEG---IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLE 429 (643)
Q Consensus 353 f~~L~~~g---ll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e 429 (643)
|..+.+.. .+..+-..+..+|..+...++=+++.++.+++..-.... ++.=..+++.|.+ .+...+.+++.-...
T Consensus 95 ~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~-~l~~~~~~~~~~av~ 172 (312)
T PF03224_consen 95 FLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSS-QLSSSDSELQYIAVQ 172 (312)
T ss_dssp HHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH--TT-HHHH---HHHHH
T ss_pred HHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHH-hhcCCCcchHHHHHH
Confidence 66655422 444444478889999999999999999999887443311 0000234555555 333445566656667
Q ss_pred HHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCch
Q 006478 430 ILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYR 508 (643)
Q Consensus 430 ~lk~LLDp~~~~~~e~d~fl~~FY-~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r 508 (643)
+|..||-.+ .+=..|. .+.++.|++-+... .. . .+....++..+ .+||+-.=+|-
T Consensus 173 ~L~~LL~~~--------~~R~~f~~~~~v~~l~~iL~~~-~~-----~------~~~~~~Ql~Y~----~ll~lWlLSF~ 228 (312)
T PF03224_consen 173 CLQNLLRSK--------EYRQVFWKSNGVSPLFDILRKQ-AT-----N------SNSSGIQLQYQ----ALLCLWLLSFE 228 (312)
T ss_dssp HHHHHHTSH--------HHHHHHHTHHHHHHHHHHHH---------------------HHHHHHH----HHHHHHHHTTS
T ss_pred HHHHHhCcc--------hhHHHHHhcCcHHHHHHHHHhh-cc-----c------CCCCchhHHHH----HHHHHHHHhcC
Confidence 777777332 2233333 44556555533210 00 0 01223444333 23444444442
Q ss_pred --hhhHHhhccHHHHHHHHhh--cccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHH
Q 006478 509 --IKCNFLLNNVVDKVLLLTR--RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKP 564 (643)
Q Consensus 509 --~k~~il~~~l~~kv~~Ll~--~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~P 564 (643)
+-..+...+++..++.+++ .|+|..|++ +-.+|+++....+.+..-|+.+++..-
T Consensus 229 ~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~-la~l~Nl~~~~~~~~~~~mv~~~~l~~ 287 (312)
T PF03224_consen 229 PEIAEELNKKYLIPLLADILKDSIKEKVVRVS-LAILRNLLSKAPKSNIELMVLCGLLKT 287 (312)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHH-HHHHHHTTSSSSTTHHHHHHHH-HHHH
T ss_pred HHHHHHHhccchHHHHHHHHHhcccchHHHHH-HHHHHHHHhccHHHHHHHHHHccHHHH
Confidence 3334555567777777654 689999984 889999999888777777777776543
No 15
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.41 E-value=25 Score=40.40 Aligned_cols=242 Identities=15% Similarity=0.151 Sum_probs=144.1
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHH
Q 006478 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (643)
Q Consensus 309 fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~ii 388 (643)
-+..|...+..+.. ....|.+.--|..+|.- |+=+|+ =.. -..+|+++...+.+.|..+...++=.+.++.
T Consensus 195 ~l~pLl~~l~~~~~-~~~lRn~tW~LsNlcrg-k~P~P~-~~~------v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 195 ALDPLLRLLNKSDK-LSMLRNATWTLSNLCRG-KNPSPP-FDV------VAPILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred chHHHHHHhccccc-hHHHHHHHHHHHHHHcC-CCCCCc-HHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 45555555544332 33455555556665553 221221 111 1357899999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcC
Q 006478 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC 468 (643)
Q Consensus 389 e~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~ 468 (643)
++.+..++-.+ .-. ....|++.|-.... -+ ..-|||++=. ...|. |..-+.--+..+-.-+.+|+...
T Consensus 266 dg~ne~iq~vi-~~g---vv~~LV~lL~~~~~-~v---~~PaLRaiGN--IvtG~--d~QTq~vi~~~~L~~l~~ll~~s 333 (514)
T KOG0166|consen 266 DGSNEKIQMVI-DAG---VVPRLVDLLGHSSP-KV---VTPALRAIGN--IVTGS--DEQTQVVINSGALPVLSNLLSSS 333 (514)
T ss_pred cCChHHHHHHH-Hcc---chHHHHHHHcCCCc-cc---ccHHHhhccc--eeecc--HHHHHHHHhcChHHHHHHHhccC
Confidence 99998776533 211 22344555543322 11 1345555522 11111 11111111111111122333222
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcCC
Q 006478 469 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 548 (643)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~ 548 (643)
|.+... .-.|=.++-.+. ++-.-...++.-|++..++.++...+.-++=-|.--+.++-.-.
T Consensus 334 ~~~~ik-----------------kEAcW~iSNItA-G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g 395 (514)
T KOG0166|consen 334 PKESIK-----------------KEACWTISNITA-GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSG 395 (514)
T ss_pred cchhHH-----------------HHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccC
Confidence 211110 112333444333 44433457888899999999999999889989999999998888
Q ss_pred hhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHHHHHHHh
Q 006478 549 DEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 592 (643)
Q Consensus 549 D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~Ir~ 592 (643)
+.--.+||++.++.+|+.++|..-- .=+=++|||=++.|.+
T Consensus 396 ~~~qi~yLv~~giI~plcdlL~~~D---~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 396 TPEQIKYLVEQGIIKPLCDLLTCPD---VKIILVALDGLENILK 436 (514)
T ss_pred CHHHHHHHHHcCCchhhhhcccCCC---hHHHHHHHHHHHHHHH
Confidence 8889999999999999999994332 2347899999999975
No 16
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.12 E-value=9.8 Score=42.94 Aligned_cols=105 Identities=16% Similarity=0.257 Sum_probs=62.9
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHh
Q 006478 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (643)
Q Consensus 310 L~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie 389 (643)
++.+...+.+++ +.-|+.++.-+..++....+ ++..++++.+...|.++|+.++.+|+-.+..+ .
T Consensus 116 ~~~v~~ll~~~~--~~VRk~A~~~l~~i~~~~p~------------~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~ 180 (526)
T PF01602_consen 116 IPDVIKLLSDPS--PYVRKKAALALLKIYRKDPD------------LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-K 180 (526)
T ss_dssp HHHHHHHHHSSS--HHHHHHHHHHHHHHHHHCHC------------CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHhcCCc--hHHHHHHHHHHHHHhccCHH------------HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-c
Confidence 444555555543 36677777777766655332 33333678889999999999999999888877 5
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 006478 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 390 ~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LL 435 (643)
++|...-..+ ..+...|.+. +...++=++..+...++.+.
T Consensus 181 ~~~~~~~~~~-----~~~~~~L~~~-l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 181 CNDDSYKSLI-----PKLIRILCQL-LSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp CTHHHHTTHH-----HHHHHHHHHH-HTCCSHHHHHHHHHHHTTST
T ss_pred cCcchhhhhH-----HHHHHHhhhc-ccccchHHHHHHHHHHHhcc
Confidence 5555311110 1122222222 25667766666666666553
No 17
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=90.34 E-value=7.4 Score=33.89 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=77.9
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHH
Q 006478 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (643)
Q Consensus 309 fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~ii 388 (643)
.++.+...+++++ .+-|..++.-|..+|.-+ ......+++.|.++.+-..|.++++.++..++-.|..+.
T Consensus 8 ~i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~--------~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 8 GLPALVSLLSSSD--ENVQREAAWALSNLSAGN--------NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLA 77 (120)
T ss_pred ChHHHHHHHHcCC--HHHHHHHHHHHHHHhcCC--------HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 4555666666544 567778887777666532 223345567899999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 006478 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 389 e~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LL 435 (643)
...|. .+..+.+. -++..|++.+- +.+..++.+...+|..|.
T Consensus 78 ~~~~~-~~~~~~~~---g~l~~l~~~l~-~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 78 AGPED-NKLIVLEA---GGVPKLVNLLD-SSNEDIQKNATGALSNLA 119 (120)
T ss_pred cCcHH-HHHHHHHC---CChHHHHHHHh-cCCHHHHHHHHHHHHHhh
Confidence 88775 33333332 25667777554 457788888888877653
No 18
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=89.66 E-value=1.5 Score=40.70 Aligned_cols=92 Identities=17% Similarity=0.352 Sum_probs=61.7
Q ss_pred ceEEEEeC-CCCCceeccce-EEEEEEeCCCcceeEEEEecCCCcceeEeecCCCcccccccCeEEEecCCCcccccccc
Q 006478 16 RVKVYRLN-DDGKWDDQGTG-HVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALS 93 (643)
Q Consensus 16 RVKvY~L~-~~~~W~D~GTG-~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~e~~~~~dlALS 93 (643)
-|=||..+ ..++|+..|.. -..+.-.......+++|-+-.+.+.+.+ .|.++..++.|++- +.|...+ +.-+++-
T Consensus 28 ~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~~p~~~~~vlNR~~~~n~~~-~i~~~~~~e~~~~~-l~~r~~~-~~I~GiW 104 (122)
T PF06058_consen 28 HVVVYKFDHETNEWEKTDIEGTLFVYKRSSSPRYGLIVLNRRSTENFVE-PITPDLDFELQDPY-LIYRNDN-QEIYGIW 104 (122)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEEEEEETTS-ECEEEEESSSS--EEE-EE-SGGGEEEETTE-EEEEETT-TEEEEEE
T ss_pred eEEEEeecCCCCcEeecCcEeeEEEEEeecccceEEEEecCCCCCceee-ecCCCcEEEEeCCE-EEEEcCC-ceEEEEE
Confidence 47899986 47899988642 2221112233446788877776665554 48888899977765 5555554 5789999
Q ss_pred ccCccchhHHHHHHHHH
Q 006478 94 FQEPTGCSYIWDNICNV 110 (643)
Q Consensus 94 FQe~~GC~~iw~~I~~v 110 (643)
|-+.+-|..|.+.+..+
T Consensus 105 f~~~~d~~ri~~~l~~l 121 (122)
T PF06058_consen 105 FYDDEDRQRIYNLLQRL 121 (122)
T ss_dssp ESSHHHHHHHHHHHHHH
T ss_pred EEeHHHHHHHHHHHHhc
Confidence 99999999999887654
No 19
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=89.40 E-value=3.3 Score=37.63 Aligned_cols=91 Identities=15% Similarity=0.269 Sum_probs=75.6
Q ss_pred ceEEEEeCC-CCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCcccccccCeEEEecCCCccccccccc
Q 006478 16 RVKVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSF 94 (643)
Q Consensus 16 RVKvY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~e~~~~~dlALSF 94 (643)
=|.+|.-.+ .+.|.-.++|-+........+..+|-+.+-..+..+.+..|-.+-.|+++.....++.-. ..-.+|+|
T Consensus 11 VvqlY~a~p~~~~W~~~~~Gvl~~vkD~~~~sy~lrl~D~~~~~v~weqElY~~f~y~~~r~fFhtFe~d--~c~~GL~F 88 (105)
T cd01205 11 VVQLYKAYPDPGRWTKTLTGAVCLVKDNVQKSYFIRLFDIKANRIIWEQELYDNFEYQQPRPFFHTFEGD--DCVVGLNF 88 (105)
T ss_pred EEEEEEecCCCCeeEEEeEEEEEEEEECCCCEEEEEEEEccCCcEEEEEEcccCcEEccCCCcEEEEecc--CcEEEEEE
Confidence 478999854 389999999999877644456788999999888899999999999999999999999865 47789999
Q ss_pred cCccchhHHHHHHH
Q 006478 95 QEPTGCSYIWDNIC 108 (643)
Q Consensus 95 Qe~~GC~~iw~~I~ 108 (643)
-+.+-+....+.+.
T Consensus 89 ade~EA~~F~k~v~ 102 (105)
T cd01205 89 ADETEAAEFRKKVL 102 (105)
T ss_pred CCHHHHHHHHHHHH
Confidence 99888877766553
No 20
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=89.17 E-value=6.5 Score=43.39 Aligned_cols=145 Identities=17% Similarity=0.229 Sum_probs=95.5
Q ss_pred HHHHHhhcCHHHHHHHHHH---------hCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHH
Q 006478 298 YVVSLLKDDSTFIQELFAR---------LRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDA 368 (643)
Q Consensus 298 eIV~~Lq~d~~fL~eLf~~---------l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~ 368 (643)
-|+.++-.|+.+++.+.+. +..++....+|-++++|++.++.+-+..+. +..|+...|--+
T Consensus 47 RilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~----------~~~~vvralvai 116 (371)
T PF14664_consen 47 RILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE----------IPRGVVRALVAI 116 (371)
T ss_pred HHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc----------CCHHHHHHHHHH
Confidence 3455666677777766651 122334467899999999999998544321 245666666666
Q ss_pred HcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHH
Q 006478 369 LQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTI 448 (643)
Q Consensus 369 L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~f 448 (643)
..+++...|..+.+++.-+.=.||.++-. -.| +..|++.++. ....+...+..++-.+||.+..- .|
T Consensus 117 ae~~~D~lr~~cletL~El~l~~P~lv~~----~gG---~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~tR-----~y 183 (371)
T PF14664_consen 117 AEHEDDRLRRICLETLCELALLNPELVAE----CGG---IRVLLRALID-GSFSISESLLDTLLYLLDSPRTR-----KY 183 (371)
T ss_pred HhCCchHHHHHHHHHHHHHHhhCHHHHHH----cCC---HHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcchh-----hh
Confidence 67788999999999999999999998643 122 3455555554 33347778888888888865421 12
Q ss_pred HHHHHHhhHHHHHHHHHhc
Q 006478 449 IEIFYEKHLGQLIDVITAS 467 (643)
Q Consensus 449 l~~FY~~~~~~L~~pl~~~ 467 (643)
+..- .-++.+++|+.+.
T Consensus 184 l~~~--~dL~~l~apftd~ 200 (371)
T PF14664_consen 184 LRPG--FDLESLLAPFTDF 200 (371)
T ss_pred hcCC--ccHHHHHHhhhhh
Confidence 2211 1256677777663
No 21
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=86.96 E-value=4.4 Score=36.98 Aligned_cols=96 Identities=19% Similarity=0.313 Sum_probs=70.8
Q ss_pred CceEEEEeCCC--CCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCcccccccCeEEEecCCCccccccc
Q 006478 15 QRVKVYRLNDD--GKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELAL 92 (643)
Q Consensus 15 ~RVKvY~L~~~--~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~e~~~~~dlAL 92 (643)
.|+.|+..++. ..|.--|.|-+.+.+.-+...-..-|.+-++...++.+.|.++-.|-+=-.+-=.|.|+..+.-+.|
T Consensus 9 arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~~~~~~~iINc~i~~~~~y~kas~~FhQWrD~R~~tVyGL 88 (111)
T cd01206 9 TRAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIISVGGTKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGL 88 (111)
T ss_pred eeeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEEecCcEEEEeccccCCcceeecccccccccccccceeeec
Confidence 47888888763 3899999987776554333323333334455688899999999999999999999999986688999
Q ss_pred cccCccchhHHHHHHHHH
Q 006478 93 SFQEPTGCSYIWDNICNV 110 (643)
Q Consensus 93 SFQe~~GC~~iw~~I~~v 110 (643)
+|..+++-+..=+.+.++
T Consensus 89 nF~Sk~ea~~F~~~f~~~ 106 (111)
T cd01206 89 GFSSEQQLTKFAEKFQEV 106 (111)
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999998866554444443
No 22
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=86.68 E-value=58 Score=36.27 Aligned_cols=240 Identities=19% Similarity=0.263 Sum_probs=131.0
Q ss_pred cchhhHHhhHHHHHhhHHHHHHHhhc--CHHHHHHHHHHhCC-----------CCCcHHhHHHHHHHHHHHHHhhhccCh
Q 006478 280 LDEATVANLNSIIHGNNAYVVSLLKD--DSTFIQELFARLRS-----------PTTLEESKKNLVHFLHEFCGLSKSLQM 346 (643)
Q Consensus 280 lDD~t~s~LnS~I~fN~~eIV~~Lq~--d~~fL~eLf~~l~~-----------~~~~~~~r~d~v~fL~e~c~~ak~lq~ 346 (643)
.|+..+..+..++.+ ||..+-. ...++.++++.+-. +......++-+..|-.-+|++-|+...
T Consensus 109 ~~~~~L~~~~~l~~~----iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~ 184 (415)
T PF12460_consen 109 LDDRVLELLSRLINL----IVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSL 184 (415)
T ss_pred cchHHHHHHHHHHHH----HHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCc
Confidence 566667766666654 5555532 23578888876651 111124566677777888888888764
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcC--hHHHHHHHH------------------------
Q 006478 347 VQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQD--PNLLRSYVV------------------------ 400 (643)
Q Consensus 347 ~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~d--p~lvR~~i~------------------------ 400 (643)
++-..+.+.+ ++.+...++...|..+..++..+++-- .+.+.+++-
T Consensus 185 ~~~~~ll~~l--------~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~W 256 (415)
T PF12460_consen 185 PDLEELLQSL--------LNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIW 256 (415)
T ss_pred cCHHHHHHHH--------HHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHH
Confidence 4333333333 455566666777777777777777662 222222211
Q ss_pred -------hc--CCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCC-CCCCchh-----hhHHHHHHHHhhHHHHHHHHH
Q 006478 401 -------RQ--EGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS-YTLSGAQ-----RDTIIEIFYEKHLGQLIDVIT 465 (643)
Q Consensus 401 -------~q--~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp-~~~~~~e-----~d~fl~~FY~~~~~~L~~pl~ 465 (643)
+. .+..++..|++.+ .++.+...+..++.+|+.+ +.....+ |--|=+-||...++.|++..-
T Consensus 257 i~KaLv~R~~~~~~~~~~~L~~lL---~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~ 333 (415)
T PF12460_consen 257 ITKALVMRGHPLATELLDKLLELL---SSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK 333 (415)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHh---CChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHh
Confidence 11 1123344444433 2244555677778877765 3332222 223334566666777766554
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhh--ccHHHHHHHHhhcccchhhHHHHHHHHH
Q 006478 466 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLL--NNVVDKVLLLTRRREKYLVVAAVRFVRT 543 (643)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~--~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ 543 (643)
+... ..+. +.+--|++.+++=+.-+ ++. ..++.=+++-+...+.-++.+++..++.
T Consensus 334 ~~~~---------------~~k~----~yL~ALs~ll~~vP~~v---l~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 334 EADD---------------EIKS----NYLTALSHLLKNVPKSV---LLPELPTLLPLLLQSLSLPDADVLLSSLETLKM 391 (415)
T ss_pred hcCh---------------hhHH----HHHHHHHHHHhhCCHHH---HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3110 0111 22334555555444222 111 1244445555667778899999999999
Q ss_pred HhcCChhHHHHHH
Q 006478 544 ILSRHDEHLINHF 556 (643)
Q Consensus 544 ii~l~D~fy~ryi 556 (643)
++.-+.+....|+
T Consensus 392 ~l~~~~~~i~~hl 404 (415)
T PF12460_consen 392 ILEEAPELISEHL 404 (415)
T ss_pred HHHcCHHHHHHHH
Confidence 9988877666554
No 23
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=85.63 E-value=73 Score=36.46 Aligned_cols=293 Identities=15% Similarity=0.216 Sum_probs=159.9
Q ss_pred HHHhhHHHHHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHc
Q 006478 291 IIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQ 370 (643)
Q Consensus 291 ~I~fN~~eIV~~Lq~d~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~ 370 (643)
++.-...+.+++|+..++|+..++.-+..|.. +-||-.+..+-+ +..+.....-|.+.+|++-+-..|.
T Consensus 4 Ll~~k~~e~l~Fik~~~~~v~~llkHI~~~~I--------mDlLLklIs~d~---~~~~~~ilewL~~q~LI~~Li~~L~ 72 (475)
T PF04499_consen 4 LLDRKTEEMLEFIKSQPNFVDNLLKHIDTPAI--------MDLLLKLISTDK---PESPTGILEWLAEQNLIPRLIDLLS 72 (475)
T ss_pred hhhcCHHHHHHHHHhCccHHHHHHHhcCCcHH--------HHHHHHHHccCc---ccchHHHHHHHHHhCHHHHHHHHhC
Confidence 45556679999999999999999999886543 556666666444 5567777888888999998888886
Q ss_pred -CCChhhHHhhHHHHHHHHhcChH-------------HHHHHHHhcCCcchHHHHHHHHhcC-CChhHHHHHHHHHHHhc
Q 006478 371 -SQDKKLVLTGTDILILFLNQDPN-------------LLRSYVVRQEGIPLLGLLVKGMITD-FGEDMHCQFLEILRSLL 435 (643)
Q Consensus 371 -~~d~~ir~~~tdIl~~iie~dp~-------------lvR~~i~~q~~~~Ll~~Li~~ll~d-~~~gl~~Q~~e~lk~LL 435 (643)
+.+..+...|+|+|..||..... +.|+ +. ....+..|++.|+.+ .+.++ .....++-.|+
T Consensus 73 p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~-L~---S~~~v~~Ll~~mL~~~~~s~l-vn~v~IlieLI 147 (475)
T PF04499_consen 73 PSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQ-LV---SEETVEKLLDIMLNSQGGSSL-VNGVSILIELI 147 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHH-Hh---ChHHHHHHHHHHhcCCCcchH-HHHHHHHHHHH
Confidence 33456778899999888765432 2232 11 234567778888863 33333 33444444444
Q ss_pred CCCC--------CC---c--hhhh-HHHHHHHH---hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHH
Q 006478 436 DSYT--------LS---G--AQRD-TIIEIFYE---KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELL 498 (643)
Q Consensus 436 Dp~~--------~~---~--~e~d-~fl~~FY~---~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL 498 (643)
-..+ +. . .+++ .++..-.+ ..++.+.+-|... +....-.+.-|.....-.. -=-++|||+
T Consensus 148 Rknnsdy~~~~~~~~~~~~p~~rdpi~l~~lL~~~~~~l~~f~~lL~~~--~~~~~l~Tt~G~l~~PLG~-~RlkI~ELi 224 (475)
T PF04499_consen 148 RKNNSDYDEQLYTTIESHPPSERDPIYLGTLLKAFSPRLPDFHKLLLNP--PKKPPLETTFGVLIPPLGF-ERLKICELI 224 (475)
T ss_pred HhcccccchhhccccccCCCCccchhhHHHHHHHHHHhHHHHHHHHhch--hhccccccCCCCCCCCcch-HHHHHHHHH
Confidence 2111 00 0 1232 23332222 2234444433331 1111111111110110000 113678887
Q ss_pred HHHHhhcCchh------hhHHhhccHH-HHHHHHh----hc----c----cchh-----------hHHH-----------
Q 006478 499 CFCVLHHPYRI------KCNFLLNNVV-DKVLLLT----RR----R----EKYL-----------VVAA----------- 537 (643)
Q Consensus 499 ~fcv~~H~~r~------k~~il~~~l~-~kv~~Ll----~~----~----~k~L-----------~LaA----------- 537 (643)
+=...-..... ...+...+.. .+...-+ .. . ++-. .+.+
T Consensus 225 AeLLhcsNm~LlN~~~~~~~~~~rd~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (475)
T PF04499_consen 225 AELLHCSNMSLLNEPKGEEIVYERDGERERLLEQLQDALNDLEIDDEDIDDNSMDDESDSSEDSRELEVSNDSSDSEEED 304 (475)
T ss_pred HHHHhCCCccccCCccccchhcCcHHHHHHHHHHHHhhhhcccCCccccccccccccccCcccccccccccccccccccc
Confidence 77665544422 1122222221 1111100 00 0 0000 0000
Q ss_pred --------------------HHHHHHHhcCChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHHHHHHH-----h
Q 006478 538 --------------------VRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR-----K 592 (643)
Q Consensus 538 --------------------lRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~Ir-----~ 592 (643)
=.-+|.- -.-=+++..-+++.+++.-++++|.+- +=+|.+...|-+++-.|- .
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-pvvGd~~k~~L~~~~il~~iLdLFfky-pwNNFLH~~V~diIqqiln~~~~~ 382 (475)
T PF04499_consen 305 ESDEDSEDEEEEESSDSEETEEKLRSN-PVVGDYLKIELIELGILPTILDLFFKY-PWNNFLHNVVEDIIQQILNGPMDE 382 (475)
T ss_pred CCccccccccccccccccccchhccCC-CCcHHHHHHHHHHCCcHHHHHHHHhcC-cchhHHHHHHHHHHHHHhCCCCcc
Confidence 0000000 000156889999999999999999886 667999999999999998 4
Q ss_pred cChHHHHHHHHH
Q 006478 593 ENLKSLVKYIVD 604 (643)
Q Consensus 593 enik~Li~hlve 604 (643)
..-..|+.||.+
T Consensus 383 ~~n~~L~~~Lf~ 394 (475)
T PF04499_consen 383 SYNSFLVKHLFE 394 (475)
T ss_pred cccHHHHHHHHh
Confidence 455688888874
No 24
>PTZ00429 beta-adaptin; Provisional
Probab=80.16 E-value=1.5e+02 Score=36.01 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=92.0
Q ss_pred hhhHHHHHHHHHhcCc-------HHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcC
Q 006478 346 MVQQLRLFRDLMNEGI-------FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD 418 (643)
Q Consensus 346 ~~~r~~~f~~L~~~gl-------l~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d 418 (643)
+.-|.--.++|..-+. ...++.++.+.++-+|.+|.=-+.-+...+|+++.. ..++..|.+ |+.|
T Consensus 119 p~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~-------~~~~~~L~~-LL~D 190 (746)
T PTZ00429 119 PVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ-------QDFKKDLVE-LLND 190 (746)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc-------cchHHHHHH-HhcC
Confidence 3445555555554433 334456667888888887776666677778875432 235556666 6789
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHH
Q 006478 419 FGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELL 498 (643)
Q Consensus 419 ~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL 498 (643)
.|+++.....-+|..+-... +++ +... .+.+.+|..-|-+ ...+....++++|
T Consensus 191 ~dp~Vv~nAl~aL~eI~~~~----~~~---l~l~-~~~~~~Ll~~L~e-------------------~~EW~Qi~IL~lL 243 (746)
T PTZ00429 191 NNPVVASNAAAIVCEVNDYG----SEK---IESS-NEWVNRLVYHLPE-------------------CNEWGQLYILELL 243 (746)
T ss_pred CCccHHHHHHHHHHHHHHhC----chh---hHHH-HHHHHHHHHHhhc-------------------CChHHHHHHHHHH
Confidence 99999877777666664221 111 1111 1222333332211 1234455788888
Q ss_pred HHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHh
Q 006478 499 CFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (643)
Q Consensus 499 ~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii 545 (643)
+-......- -..+++.++...+....--++++|+|++=...
T Consensus 244 ~~y~P~~~~------e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 244 AAQRPSDKE------SAETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred HhcCCCCcH------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 654432211 12467777777777777788888888776554
No 25
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=74.76 E-value=2e+02 Score=34.69 Aligned_cols=110 Identities=15% Similarity=0.300 Sum_probs=63.1
Q ss_pred HHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHH------------hcCCcchHHHHHHHHhc-CCCh
Q 006478 355 DLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVV------------RQEGIPLLGLLVKGMIT-DFGE 421 (643)
Q Consensus 355 ~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~------------~q~~~~Ll~~Li~~ll~-d~~~ 421 (643)
.++++|+++.+-.+|.+++..+..+++-.|-.+--+.-+ ++.+. ..+...+...-++.|.+ ..|+
T Consensus 285 kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~EN--K~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~ 362 (708)
T PF05804_consen 285 KMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKEN--KDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP 362 (708)
T ss_pred HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH--HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH
Confidence 457899999999999988877766666555322211111 11111 12233456666666766 6788
Q ss_pred hHHHHHHH-----HHHHhcCCCCCC-----------chhhhHHHHHHHHhhHHHHHHHHHhc
Q 006478 422 DMHCQFLE-----ILRSLLDSYTLS-----------GAQRDTIIEIFYEKHLGQLIDVITAS 467 (643)
Q Consensus 422 gl~~Q~~e-----~lk~LLDp~~~~-----------~~e~d~fl~~FY~~~~~~L~~pl~~~ 467 (643)
+++.++.. .|-.||..++.. ..++ .--.+=|..|++.+++-++..
T Consensus 363 ~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~ 423 (708)
T PF05804_consen 363 ELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLEN 423 (708)
T ss_pred HHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhC
Confidence 88887775 444555433211 0011 111234667899998888764
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=73.23 E-value=1.8e+02 Score=33.42 Aligned_cols=170 Identities=16% Similarity=0.210 Sum_probs=92.4
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhc-CCChhHH-HHH
Q 006478 350 LRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMIT-DFGEDMH-CQF 427 (643)
Q Consensus 350 ~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~-d~~~gl~-~Q~ 427 (643)
...+...++.|+++.+-..|.++|.-++..+.|++..+.+ .|. ..+|+.++. .+..|++.+.. +.|+.+. .-+
T Consensus 192 ~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~-g~~yL~~~g---i~~~L~~~l~~~~~dp~~~~~~l 266 (503)
T PF10508_consen 192 PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPH-GLQYLEQQG---IFDKLSNLLQDSEEDPRLSSLLL 266 (503)
T ss_pred HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-Chh-HHHHHHhCC---HHHHHHHHHhccccCCcccchhh
Confidence 3456778889999999999999999999999999999999 554 367887653 45555555544 2333111 111
Q ss_pred HHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCc
Q 006478 428 LEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPY 507 (643)
Q Consensus 428 ~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~ 507 (643)
...++..= ++....-..++. =|...++.|+.-+.+ .++....-.+|-+.... ++-
T Consensus 267 ~g~~~f~g---~la~~~~~~v~~-~~p~~~~~l~~~~~s-------------------~d~~~~~~A~dtlg~ig--st~ 321 (503)
T PF10508_consen 267 PGRMKFFG---NLARVSPQEVLE-LYPAFLERLFSMLES-------------------QDPTIREVAFDTLGQIG--STV 321 (503)
T ss_pred hhHHHHHH---HHHhcChHHHHH-HHHHHHHHHHHHhCC-------------------CChhHHHHHHHHHHHHh--CCH
Confidence 12221110 000000011221 233344444422211 11222333445555443 444
Q ss_pred hhhhHHhhc------cHHHHHHHHhhcccchhhHHHHHHHHHHhcCCh
Q 006478 508 RIKCNFLLN------NVVDKVLLLTRRREKYLVVAAVRFVRTILSRHD 549 (643)
Q Consensus 508 r~k~~il~~------~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D 549 (643)
.-|..+..+ +++.++.....+...-+++.|+.++-+++....
T Consensus 322 ~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 322 EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT 369 (503)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence 455555222 234455555555556789999999999965543
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=72.93 E-value=25 Score=30.42 Aligned_cols=98 Identities=17% Similarity=0.149 Sum_probs=69.7
Q ss_pred HHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 006478 356 LMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 356 L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LL 435 (643)
+++.|+++.+-..|.+.+..+|..+.-.+..+...+|.....+ .+. ..+..+++.| .+.++.++.....+|..|.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~---~~i~~l~~~l-~~~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAV-VEA---GGLPALVQLL-KSEDEEVVKAALWALRNLA 77 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHH-HHC---CChHHHHHHH-hCCCHHHHHHHHHHHHHHc
Confidence 5688999999889999999999999999999999988865553 443 3455666644 5578899989999999997
Q ss_pred CCCCCCchhhhHHHHHHHHh-hHHHHHHHHH
Q 006478 436 DSYTLSGAQRDTIIEIFYEK-HLGQLIDVIT 465 (643)
Q Consensus 436 Dp~~~~~~e~d~fl~~FY~~-~~~~L~~pl~ 465 (643)
.... .....+.+. .++.|++-+.
T Consensus 78 ~~~~-------~~~~~~~~~g~l~~l~~~l~ 101 (120)
T cd00020 78 AGPE-------DNKLIVLEAGGVPKLVNLLD 101 (120)
T ss_pred cCcH-------HHHHHHHHCCChHHHHHHHh
Confidence 5432 112233333 5666666543
No 28
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=72.67 E-value=1.1e+02 Score=30.59 Aligned_cols=186 Identities=15% Similarity=0.157 Sum_probs=101.7
Q ss_pred CCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHH
Q 006478 318 RSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRS 397 (643)
Q Consensus 318 ~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~ 397 (643)
++++.+=++|.+++.-|+.++.-. ........++..+- .++..+...+.+....+...|+..+..+..+-..-+..
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~--~~~~~~~~~~~~l~--~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~ 90 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGN--APEDFPPDFVECLR--QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEP 90 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH---B-----HHHHHHHH-----HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcC--CccccHHHHHHHHH--HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 445556678999999999888755 11122233333333 66777777777777788888888888887665554444
Q ss_pred HHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHH-HHHHHhcCCCcccccc
Q 006478 398 YVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQL-IDVITASCPQEGIAQS 476 (643)
Q Consensus 398 ~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L-~~pl~~~~~~~~~~~~ 476 (643)
++ ..++..|++.+ .+...-++....++|..+...-++. +.+ +..+....
T Consensus 91 ~~-----~~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~~~----------------~~~~~~~l~~~~-------- 140 (228)
T PF12348_consen 91 YA-----DILLPPLLKKL-GDSKKFIREAANNALDAIIESCSYS----------------PKILLEILSQGL-------- 140 (228)
T ss_dssp HH-----HHHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS-H------------------HHHHHHHHHHT--------
T ss_pred HH-----HHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCCcH----------------HHHHHHHHHHHH--------
Confidence 32 22344444433 3445567777778887776543311 222 22222211
Q ss_pred cCCCCcccCCcHHHHHHHHHHHHHHHhhcC---chhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHH
Q 006478 477 ASSGGRVESTKPEILSNICELLCFCVLHHP---YRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTI 544 (643)
Q Consensus 477 ~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~---~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~i 544 (643)
....+.+=...++.+..++..|+ -.++.....+.+..-+.+++.-.+.-+|=+|-+++..+
T Consensus 141 -------~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 141 -------KSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp -------T-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred -------hCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 11234455677889999999998 44444443466777778888888888888888888775
No 29
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=69.42 E-value=2.5 Score=41.39 Aligned_cols=42 Identities=17% Similarity=0.536 Sum_probs=33.7
Q ss_pred CceEEEEeCC-CCCceeccceEEEEEEeCCCcceeEEEEecCC
Q 006478 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEED 56 (643)
Q Consensus 15 ~RVKvY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~d 56 (643)
-|.|+|.... -..|.++|||-|.......++.+.|+++-..-
T Consensus 95 ~RaKLfrFd~~akewkERgtGd~~~lkhkktnk~ri~MrRDkt 137 (211)
T COG5171 95 ARAKLFRFDEEAKEWKERGTGDMIILKHKKTNKARITMRRDKT 137 (211)
T ss_pred hhhhheeehHHHHHHHhcCCCcEEEEeccccCceEEEEeechh
Confidence 5999999964 56899999999998876666777888876553
No 30
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=67.36 E-value=20 Score=39.90 Aligned_cols=232 Identities=28% Similarity=0.388 Sum_probs=119.0
Q ss_pred CCCHHHHHHHHh---hcChhhHHHHHHHHhcchHHHHHHHHHHHHHHhcC----ChhhHHHHHHH---HHHHHhcCChhh
Q 006478 139 LSTLPLILKTVT---ESGIADQMRLTELILNDQDFFRKLMDLFRICEDLE----NIDGLHMIFKI---IKGIILLNSPQI 208 (643)
Q Consensus 139 l~nL~~I~~~i~---~~~~~~r~~l~~~i~~~~~Yi~kL~~lF~~~Edle----~~~~L~~L~~I---vk~iillNd~~i 208 (643)
+..|....+.+. ++..+++.--.++| |+.++-||++||+. ||-. -...||.+|-= -|..+...-+.|
T Consensus 146 wphLqlvye~~Lrf~~sp~~d~~vaK~yi--d~~FvlkLLdLFdS-EDpRERe~LKT~LhrIygKfl~~r~firk~iNNi 222 (457)
T KOG2085|consen 146 WPHLQLVYEFLLRFLESPDFDPSVAKKYI--DQKFVLKLLDLFDS-EDPREREFLKTILHRIYGKFLVHRPFIRKSINNI 222 (457)
T ss_pred chHHHHHHHHHHHHHhCcccCHHHHHHHh--hHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcch
Confidence 445655554442 33444544334444 67999999999964 2222 23455666541 122222333333
Q ss_pred Hhhhh-cc------hhHhHHhhhcccCCCCCcccchHHhhhhcCCceeeeecCChHHHHHHHhh--h-eecee-eehhcc
Q 006478 209 FEKIF-GD------ELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQT--Y-RVGYL-KDVVLA 277 (643)
Q Consensus 209 ~E~ll-sD------e~i~~vvG~LEYDp~~p~~~~HR~fL~~~~~FkeVVpi~d~~i~~kIHqt--y-RlqYL-KDVVL~ 277 (643)
+=.++ +- .-+++++|...-.=++|-+..|.-||.+ =.||+.-+-=..--|+- | =.||+ ||-=|+
T Consensus 223 f~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~r-----vLipLhk~k~l~~yh~QLaYcivQfveKd~kl~ 297 (457)
T KOG2085|consen 223 FLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVR-----VLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLT 297 (457)
T ss_pred hhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHH-----hhhccccCCCccccccccceeeeeeeccCcccc
Confidence 32222 22 2367888999989999988899999963 23454422111111110 0 01122 221111
Q ss_pred cccchhhHHhhHHHHHhhHHHHHHHhh-----c---CHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHH--HHhhhccChh
Q 006478 278 RVLDEATVANLNSIIHGNNAYVVSLLK-----D---DSTFIQELFARLRSPTTLEESKKNLVHFLHEF--CGLSKSLQMV 347 (643)
Q Consensus 278 r~lDD~t~s~LnS~I~fN~~eIV~~Lq-----~---d~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~--c~~ak~lq~~ 347 (643)
|. =|-.+|+ + .-.||.++=.+++--+.+.-.|-.. -..+|+ |--|-+.|..
T Consensus 298 ----~~--------------VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~-PLf~qia~c~sS~HFQVA 358 (457)
T KOG2085|consen 298 ----ET--------------VIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMV-PLFRQIARCVSSPHFQVA 358 (457)
T ss_pred ----HH--------------HHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhH-HHHHHHHHHcCChhHHHH
Confidence 11 0111221 1 1136666665555433332223222 233332 4445566777
Q ss_pred hHHHHH------HHHHhcC---cHHHHHHHHc-----CCChhhHHhhHHHHHHHHhcChHHHHH
Q 006478 348 QQLRLF------RDLMNEG---IFDIVTDALQ-----SQDKKLVLTGTDILILFLNQDPNLLRS 397 (643)
Q Consensus 348 ~r~~~f------~~L~~~g---ll~vi~~~L~-----~~d~~ir~~~tdIl~~iie~dp~lvR~ 397 (643)
.|..+| .+|+... +++++-.+|- +=+..+..++..++-+++|.||.+.-.
T Consensus 359 EraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFee 422 (457)
T KOG2085|consen 359 ERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEE 422 (457)
T ss_pred HHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 776554 4566443 6666666663 234567788889999999999987654
No 31
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=67.12 E-value=23 Score=40.43 Aligned_cols=276 Identities=17% Similarity=0.204 Sum_probs=154.9
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChh-----hHHHHHHHHHhcCcHH-HHHH
Q 006478 294 GNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMV-----QQLRLFRDLMNEGIFD-IVTD 367 (643)
Q Consensus 294 fN~~eIV~~Lq~d~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~-----~r~~~f~~L~~~gll~-vi~~ 367 (643)
.....|+++|.+ .++++.|.+.+. |+.+.+....+..||+++..++.+-+.. .-..+-+.|++.-... .++.
T Consensus 49 ~~~~~ilewL~~-q~LI~~Li~~L~-p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~ 126 (475)
T PF04499_consen 49 ESPTGILEWLAE-QNLIPRLIDLLS-PSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDI 126 (475)
T ss_pred cchHHHHHHHHH-hCHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHH
Confidence 456689999986 679999999997 7778888889999999999999865432 2356888898776544 6688
Q ss_pred HHcCCChhhHHhhHHHHHHHHhcChHHHHHHH----HhcC----Cc----chHH-------HHHHHHhcCC---------
Q 006478 368 ALQSQDKKLVLTGTDILILFLNQDPNLLRSYV----VRQE----GI----PLLG-------LLVKGMITDF--------- 419 (643)
Q Consensus 368 ~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i----~~q~----~~----~Ll~-------~Li~~ll~d~--------- 419 (643)
+|.......-..|+.|++.+|....+-.-... ...+ +. .++. -+.+.|....
T Consensus 127 mL~~~~~s~lvn~v~IlieLIRknnsdy~~~~~~~~~~~~p~~rdpi~l~~lL~~~~~~l~~f~~lL~~~~~~~~l~Tt~ 206 (475)
T PF04499_consen 127 MLNSQGGSSLVNGVSILIELIRKNNSDYDEQLYTTIESHPPSERDPIYLGTLLKAFSPRLPDFHKLLLNPPKKPPLETTF 206 (475)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhcccccchhhccccccCCCCccchhhHHHHHHHHHHhHHHHHHHHhchhhccccccCC
Confidence 88644477778888999888865533221100 0000 11 1111 1223333220
Q ss_pred -----ChhH-HHHHHHHHHHhcCCCCCCch----------hhhHHHHHHHHhhHHHHHHHHHhcCCCccc--cc-c----
Q 006478 420 -----GEDM-HCQFLEILRSLLDSYTLSGA----------QRDTIIEIFYEKHLGQLIDVITASCPQEGI--AQ-S---- 476 (643)
Q Consensus 420 -----~~gl-~~Q~~e~lk~LLDp~~~~~~----------e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~--~~-~---- 476 (643)
-.|. +-.++|.+-.||...+|..- +||....---+. ...+...+....+.... .. .
T Consensus 207 G~l~~PLG~~RlkI~ELiAeLLhcsNm~LlN~~~~~~~~~~rd~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (475)
T PF04499_consen 207 GVLIPPLGFERLKICELIAELLHCSNMSLLNEPKGEEIVYERDGERERLLEQ-LQDALNDLEIDDEDIDDNSMDDESDSS 285 (475)
T ss_pred CCCCCCcchHHHHHHHHHHHHHhCCCccccCCccccchhcCcHHHHHHHHHH-HHhhhhcccCCccccccccccccccCc
Confidence 1132 56789999999999998531 455433322221 22222222210000000 00 0
Q ss_pred -cCCCCcccCCcHH---------------H-HHHHHHHHHHHHhhcC---chhhhHHhhccHHHHHHHHhh--cccchhh
Q 006478 477 -ASSGGRVESTKPE---------------I-LSNICELLCFCVLHHP---YRIKCNFLLNNVVDKVLLLTR--RREKYLV 534 (643)
Q Consensus 477 -~~~~~~~~~~~~~---------------l-l~~l~eLL~fcv~~H~---~r~k~~il~~~l~~kv~~Ll~--~~~k~L~ 534 (643)
............+ . -...++.-.=-.+.-+ -.+|.-+...+++..++.|.. +-+-||.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvvGd~~k~~L~~~~il~~iLdLFfkypwNNFLH 365 (475)
T PF04499_consen 286 EDSRELEVSNDSSDSEEEDESDEDSEDEEEEESSDSEETEEKLRSNPVVGDYLKIELIELGILPTILDLFFKYPWNNFLH 365 (475)
T ss_pred cccccccccccccccccccCCccccccccccccccccccchhccCCCCcHHHHHHHHHHCCcHHHHHHHHhcCcchhHHH
Confidence 0000000000000 0 0000000000001111 136778888899999998854 6678999
Q ss_pred HHHHHHHHHHhcCC-----hhHHHHHH-HhhCChHHHHHHHhHh
Q 006478 535 VAAVRFVRTILSRH-----DEHLINHF-VKNNLLKPIVDAFVAN 572 (643)
Q Consensus 535 LaAlRf~R~ii~l~-----D~fy~ryi-ik~~lf~Pv~~~~~~n 572 (643)
...-.++..|+... ..+...++ -+.++.+=|++...++
T Consensus 366 ~~V~diIqqiln~~~~~~~n~~L~~~Lf~~~~l~~~Il~~~~~~ 409 (475)
T PF04499_consen 366 NVVEDIIQQILNGPMDESYNSFLVKHLFEDCDLTDRILEGWKEN 409 (475)
T ss_pred HHHHHHHHHHhCCCCcccccHHHHHHHHhhccHHHHHHHhhhhc
Confidence 99999999999332 22333333 4677888888888765
No 32
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=65.29 E-value=4.9e+02 Score=35.40 Aligned_cols=224 Identities=16% Similarity=0.158 Sum_probs=141.4
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHH
Q 006478 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 386 (643)
Q Consensus 307 ~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~ 386 (643)
..+++.|...+++.+ ..-|.+++.-|..++. . .+.-..++..|-++.+=.+|++.+...|..|.-.|-+
T Consensus 57 aGaIP~LV~lL~sg~--~~vk~nAaaaL~nLS~---~------e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~s 125 (2102)
T PLN03200 57 SQAMPLLVSLLRSGT--LGAKVNAAAVLGVLCK---E------EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYA 125 (2102)
T ss_pred cCcHHHHHHHHcCCC--HHHHHHHHHHHHHHhc---C------HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 446777888776543 3455566655555432 1 1223345568999999999999999999999999988
Q ss_pred HHhcCh-HHHHHHHHhcCCcchHHHHHHHHhc--CCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHH-HHHhhHHHHHH
Q 006478 387 FLNQDP-NLLRSYVVRQEGIPLLGLLVKGMIT--DFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEI-FYEKHLGQLID 462 (643)
Q Consensus 387 iie~dp-~lvR~~i~~q~~~~Ll~~Li~~ll~--d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~-FY~~~~~~L~~ 462 (643)
+..++. ...|..++..+|- +..|++.+-. -+|..++....-+|..|..... .+-.. .=.+.++.|++
T Consensus 126 LS~~~~~D~~~~~I~v~~Ga--Vp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~e-------n~~~~IIeaGaVp~LV~ 196 (2102)
T PLN03200 126 VSSGGLSDHVGSKIFSTEGV--VPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTD-------GFWSATLEAGGVDILVK 196 (2102)
T ss_pred HHcCcchhhhhhhhhhhcCC--hHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCcc-------chHHHHHHcCCHHHHHH
Confidence 887764 3344444433333 1223333221 1244566666778888864332 11111 11246677766
Q ss_pred HHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcc-cchhhHHHHHHH
Q 006478 463 VITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRR-EKYLVVAAVRFV 541 (643)
Q Consensus 463 pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~-~k~L~LaAlRf~ 541 (643)
-|.+. ++.+..+.+.+|+-...+++ ..+.-++..+.+..++.++++. +.-++-.|+-.+
T Consensus 197 LLsS~-------------------d~~lQ~eAa~aLa~Lass~e-e~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL 256 (2102)
T PLN03200 197 LLSSG-------------------NSDAQANAASLLARLMMAFE-SSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGAL 256 (2102)
T ss_pred HHcCC-------------------CHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHH
Confidence 65321 12333445565544444433 3577788999999999999764 457888888889
Q ss_pred HHHhcCChhHHHHHHHhhCChHHHHHHHhH
Q 006478 542 RTILSRHDEHLINHFVKNNLLKPIVDAFVA 571 (643)
Q Consensus 542 R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~ 571 (643)
+++.+-. .-+.+.+++.|-..|.++++..
T Consensus 257 ~nLAs~s-~e~r~~Iv~aGgIp~LI~lL~s 285 (2102)
T PLN03200 257 EALSSQS-KEAKQAIADAGGIPALINATVA 285 (2102)
T ss_pred HHHhcCC-HHHHHHHHHCCCHHHHHHHHhC
Confidence 8877644 5588999999999999998863
No 33
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=65.00 E-value=69 Score=35.80 Aligned_cols=37 Identities=22% Similarity=0.404 Sum_probs=24.2
Q ss_pred cHHHHHHHHcC-----CChhhHHhhHHHHHHHHhcChHHHHH
Q 006478 361 IFDIVTDALQS-----QDKKLVLTGTDILILFLNQDPNLLRS 397 (643)
Q Consensus 361 ll~vi~~~L~~-----~d~~ir~~~tdIl~~iie~dp~lvR~ 397 (643)
+++++-.+|.. =+..+|.+|..++-.+.+.||.+..+
T Consensus 337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 56666666543 14567777777777777777776654
No 34
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=64.09 E-value=5.2e+02 Score=35.22 Aligned_cols=203 Identities=15% Similarity=0.148 Sum_probs=141.4
Q ss_pred hcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 006478 358 NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS 437 (643)
Q Consensus 358 ~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp 437 (643)
..|-++.+...|.++++.++..|+.+|..+...++.... .++..+..+.+ +. ++...+.+.+.+..-+|-.|...
T Consensus 607 ~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~-avv~agaIpPL---V~-LLss~~~~v~keAA~AL~nL~~~ 681 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE-SLATDEIINPC---IK-LLTNNTEAVATQSARALAALSRS 681 (2102)
T ss_pred ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH-HHHHcCCHHHH---HH-HHhcCChHHHHHHHHHHHHHHhC
Confidence 457889999999999999999999999999998888544 45555543332 33 23456777888888888888752
Q ss_pred CCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhcc
Q 006478 438 YTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNN 517 (643)
Q Consensus 438 ~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~ 517 (643)
+...++-.+. =..+++-|++.|.+. +.++-...++-|..+..+..- +.-+...+
T Consensus 682 --~~~~q~~~~v---~~GaV~pL~~LL~~~-------------------d~~v~e~Al~ALanLl~~~e~--~~ei~~~~ 735 (2102)
T PLN03200 682 --IKENRKVSYA---AEDAIKPLIKLAKSS-------------------SIEVAEQAVCALANLLSDPEV--AAEALAED 735 (2102)
T ss_pred --CCHHHHHHHH---HcCCHHHHHHHHhCC-------------------ChHHHHHHHHHHHHHHcCchH--HHHHHhcC
Confidence 2111222111 133566666665431 234555667778878877764 34566788
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHhcC--ChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHHHHHHHh
Q 006478 518 VVDKVLLLTRRREKYLVVAAVRFVRTILSR--HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 592 (643)
Q Consensus 518 l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l--~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~Ir~ 592 (643)
.+....+++++...--+-.|.+-+-..... -|+-.-.|+-.-+...|.++++... +-+|-.+|-.||-+.++-+
T Consensus 736 ~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~-~~~~~~~~~al~~l~~l~~ 811 (2102)
T PLN03200 736 IILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNST-DLDSSATSEALEALALLAR 811 (2102)
T ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcC-CcchhhHHHHHHHHHHHHh
Confidence 899999999988766666666666554333 2455778999999999999999665 5568888888998888865
No 35
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=63.41 E-value=12 Score=25.77 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=25.2
Q ss_pred cHHHHHHHHcCCChhhHHhhHHHHHHHHhc
Q 006478 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQ 390 (643)
Q Consensus 361 ll~vi~~~L~~~d~~ir~~~tdIl~~iie~ 390 (643)
|++.+-..++|++..+|.+|+.-|..+.++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 467888889999999999999999888765
No 36
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=61.29 E-value=2.4e+02 Score=30.45 Aligned_cols=219 Identities=15% Similarity=0.222 Sum_probs=121.2
Q ss_pred HHHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHc----CCC
Q 006478 298 YVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQ----SQD 373 (643)
Q Consensus 298 eIV~~Lq~d~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~----~~d 373 (643)
.+++.|-++. ++.+..-+.+.. .....-++++|.+++.+.. .....++++.+ +- =++++...+. ...
T Consensus 48 ~l~~~iL~~~--~k~lyr~L~~~~--~~~~~~~LrLL~~iv~f~~---g~~a~~v~~~f-d~-~~~~l~kll~~~~~~~~ 118 (330)
T PF11707_consen 48 ELIRSILQNH--LKLLYRSLSSSK--PSLTNPALRLLTAIVSFDG---GALAREVLRSF-DF-SLKSLPKLLTPRKKEKE 118 (330)
T ss_pred HHHHHHHHHH--HHHHHHHhCcCc--HHHHHHHHHHHHHHHccCC---HHHHHHHHHhc-CC-chhhHHHHhcccccccc
Confidence 4555554432 777777776654 2344467788888776321 11223345443 10 1222222221 111
Q ss_pred ---------hhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHH-hcCCCCCCch
Q 006478 374 ---------KKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS-LLDSYTLSGA 443 (643)
Q Consensus 374 ---------~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~-LLDp~~~~~~ 443 (643)
+++|....+.+.+++.+-+..+|..++++.+. +..+.+.|-.| ++.+-.++.+.|+. +++.+...-.
T Consensus 119 ~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~--~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~ 195 (330)
T PF11707_consen 119 KDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKL--MSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRS 195 (330)
T ss_pred ccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCch--HHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChh
Confidence 28999999999999988887778778876544 88888888775 56676778888873 5544454333
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCc----------------
Q 006478 444 QRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPY---------------- 507 (643)
Q Consensus 444 e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~---------------- 507 (643)
.| ..+|=+..+.+|.+ |+....+ .. ...-+++.-+++..+| |...|.-
T Consensus 196 ~K---~~~fn~~~L~~l~~-Ly~~~~~-------~~----~~~~~~~vh~fL~~lc-T~p~~Gv~f~d~~~~~~~~~~~~ 259 (330)
T PF11707_consen 196 TK---CKLFNEWTLSQLAS-LYSRDGE-------DE----KSSVADLVHEFLLALC-TDPKHGVCFPDNGWYPRESDSGV 259 (330)
T ss_pred hh---hhhcCHHHHHHHHH-HhcccCC-------cc----cchHHHHHHHHHHHHh-cCCCcccccCCCCcCcCcccccc
Confidence 33 34555566777766 5543211 00 0111222222332222 1122211
Q ss_pred ----hhhhHHhhccHHHHHHHHhhcccc--hhhHHHHHHHHHHh
Q 006478 508 ----RIKCNFLLNNVVDKVLLLTRRREK--YLVVAAVRFVRTIL 545 (643)
Q Consensus 508 ----r~k~~il~~~l~~kv~~Ll~~~~k--~L~LaAlRf~R~ii 545 (643)
.-+.+=..|.++.++++.+++.+- +..| +++.+++|=
T Consensus 260 ~~~~~~~~~~~~Nk~L~~ll~~lkp~e~~~q~~L-vl~Il~~~P 302 (330)
T PF11707_consen 260 PVTINNKSFKINNKLLLNLLKKLKPWEDDRQQEL-VLKILKACP 302 (330)
T ss_pred cccccCCCCCcccHHHHHHHHHCCCCccHHHHHH-HHHHHHHCh
Confidence 113345556778888888876553 3444 677777764
No 37
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=59.45 E-value=1.8e+02 Score=28.47 Aligned_cols=103 Identities=21% Similarity=0.330 Sum_probs=70.6
Q ss_pred HHHHHHHhcCcHH-----------HHHHHHcCC-ChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcC
Q 006478 351 RLFRDLMNEGIFD-----------IVTDALQSQ-DKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD 418 (643)
Q Consensus 351 ~~f~~L~~~gll~-----------vi~~~L~~~-d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d 418 (643)
.-|..|++||+.. +..++-... |.++...+..||-.++..+|.+ .+.+ ++ ..-+..|+..|-.
T Consensus 39 ~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~l-y~~V-~~--evt~~~Li~hLq~- 113 (160)
T PF11841_consen 39 TAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKL-YQLV-EQ--EVTLESLIRHLQV- 113 (160)
T ss_pred HHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHH-HHHH-hc--cCCHHHHHHHHHc-
Confidence 3567788888732 333333333 7889999999999999988884 3333 32 3446677777766
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHH
Q 006478 419 FGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQL 460 (643)
Q Consensus 419 ~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L 460 (643)
.++.++.-.+..+.+|+=-. +..+|.++.+.+..+.+...
T Consensus 114 ~~~~iq~naiaLinAL~~kA--~~~~r~~i~~~l~~k~~R~~ 153 (160)
T PF11841_consen 114 SNQEIQTNAIALINALFLKA--DDSKRKEIAETLSQKQIRQV 153 (160)
T ss_pred CCHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHH
Confidence 78888888888888887432 23467788888888876443
No 38
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=58.54 E-value=1.8e+02 Score=29.08 Aligned_cols=159 Identities=21% Similarity=0.266 Sum_probs=98.1
Q ss_pred hhHHhhHHHHHHHHhc-ChHHHHHHHHh----c--CCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCC--ch--
Q 006478 375 KLVLTGTDILILFLNQ-DPNLLRSYVVR----Q--EGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS--GA-- 443 (643)
Q Consensus 375 ~ir~~~tdIl~~iie~-dp~lvR~~i~~----q--~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~--~~-- 443 (643)
++|.+|.-.|..++.+ +|-.+-+|--. . .+..--..|...++.|+++.++.-...++..|||....- .+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4788899999999999 87766666432 1 011111234455788999999999999999999864210 00
Q ss_pred ---hhhHHHHHHHH--hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCc-hhhhHHhhcc
Q 006478 444 ---QRDTIIEIFYE--KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPY-RIKCNFLLNN 517 (643)
Q Consensus 444 ---e~d~fl~~FY~--~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~-r~k~~il~~~ 517 (643)
.+-.|..+--. ..+-.+=.-|... .. +...+.++.++++-|+-.|+.=+| |++.=++ ..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~-----L~---------~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll-~~ 145 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLA-----LQ---------AEKSPPVLTQLLKCLAVLVQATPYHRLPPGLL-TE 145 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHH-----Hh---------cccccHHHHHHHHHHHHHHccCChhhcCHhHH-HH
Confidence 11133332111 0111111111110 00 122456788999999999999999 4443222 34
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHhcCC
Q 006478 518 VVDKVLLLTRRREKYLVVAAVRFVRTILSRH 548 (643)
Q Consensus 518 l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~ 548 (643)
++..|..++..++.-.+++|+=++..+++..
T Consensus 146 ~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 146 VVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 5566667788899999999999998887764
No 39
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=58.08 E-value=2.4e+02 Score=29.48 Aligned_cols=186 Identities=18% Similarity=0.230 Sum_probs=105.1
Q ss_pred HHHHHc-CCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCch
Q 006478 365 VTDALQ-SQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGA 443 (643)
Q Consensus 365 i~~~L~-~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~ 443 (643)
+-..|. .+|+.++..+.=.+..+..+..+ |. +.++-|.. .++..++.++++.++.+...+|.-| ++...
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~n--q~-~Ir~~Ggi---~lI~~lL~~p~~~vr~~AL~aL~Nl----s~~~e 86 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFPFN--QD-IIRDLGGI---SLIGSLLNDPNPSVREKALNALNNL----SVNDE 86 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChhH--HH-HHHHcCCH---HHHHHHcCCCChHHHHHHHHHHHhc----CCChh
Confidence 334444 45666666555555444333322 33 22332221 2355577889999988777776544 11111
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHH-HhhcCchhhhHHhhccHHHHH
Q 006478 444 QRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFC-VLHHPYRIKCNFLLNNVVDKV 522 (643)
Q Consensus 444 e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fc-v~~H~~r~k~~il~~~l~~kv 522 (643)
.+ .-+.. |++...+-+.+. |.+ ..+...-+.+|+-. +..+.+++ +. +.+...
T Consensus 87 n~-~~Ik~----~i~~Vc~~~~s~-~ln----------------s~~Q~agLrlL~nLtv~~~~~~~----l~-~~i~~l 139 (254)
T PF04826_consen 87 NQ-EQIKM----YIPQVCEETVSS-PLN----------------SEVQLAGLRLLTNLTVTNDYHHM----LA-NYIPDL 139 (254)
T ss_pred hH-HHHHH----HHHHHHHHHhcC-CCC----------------CHHHHHHHHHHHccCCCcchhhh----HH-hhHHHH
Confidence 11 22333 344444433331 110 11111223444433 33322222 22 245567
Q ss_pred HHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHHHHHHH
Q 006478 523 LLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 591 (643)
Q Consensus 523 ~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~Ir 591 (643)
+.|+.....-.+.-|+|.+-+.= .+.-..|+++..+.+..++.+|..+.+++||++ +|-+|+-|.
T Consensus 140 l~LL~~G~~~~k~~vLk~L~nLS--~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~--~l~~~~ni~ 204 (254)
T PF04826_consen 140 LSLLSSGSEKTKVQVLKVLVNLS--ENPDMTRELLSAQVLSSFLSLFNSSESKENLLR--VLTFFENIN 204 (254)
T ss_pred HHHHHcCChHHHHHHHHHHHHhc--cCHHHHHHHHhccchhHHHHHHccCCccHHHHH--HHHHHHHHH
Confidence 78888888888888888765533 344478999999999999999999999999987 678888773
No 40
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.76 E-value=3.8e+02 Score=31.07 Aligned_cols=202 Identities=17% Similarity=0.198 Sum_probs=123.4
Q ss_pred HHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHH
Q 006478 353 FRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILR 432 (643)
Q Consensus 353 f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk 432 (643)
.+..++.|-.+.+-..+.+++..++--|+=-|..|+-+.|. .|++++.... +.-|...+.......+.-+++=+|.
T Consensus 145 T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g~---l~pLl~~l~~~~~~~~lRn~tW~Ls 220 (514)
T KOG0166|consen 145 TKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCGA---LDPLLRLLNKSDKLSMLRNATWTLS 220 (514)
T ss_pred ccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhcc---hHHHHHHhccccchHHHHHHHHHHH
Confidence 44567889999988899999988887777666666666655 6998887543 2233333333333355556666666
Q ss_pred HhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhH
Q 006478 433 SLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCN 512 (643)
Q Consensus 433 ~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~ 512 (643)
-|.-..+-. |.-+.. ...++.|..-+. ..+++++.-.|=.++|.+-+-.-.+ ..
T Consensus 221 Nlcrgk~P~-P~~~~v-----~~iLp~L~~ll~-------------------~~D~~Vl~Da~WAlsyLsdg~ne~i-q~ 274 (514)
T KOG0166|consen 221 NLCRGKNPS-PPFDVV-----APILPALLRLLH-------------------STDEEVLTDACWALSYLTDGSNEKI-QM 274 (514)
T ss_pred HHHcCCCCC-CcHHHH-----HHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHHhcCChHHH-HH
Confidence 665333211 110100 112233322221 2345566666666676665444444 35
Q ss_pred HhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHH
Q 006478 513 FLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLEL 586 (643)
Q Consensus 513 il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lel 586 (643)
++.-.+..++..|+....--++..|||-+=+|+ ..++.-..-+|.++++. ++..+..+.+.+++--.||-=+
T Consensus 275 vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv-tG~d~QTq~vi~~~~L~-~l~~ll~~s~~~~ikkEAcW~i 346 (514)
T KOG0166|consen 275 VIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV-TGSDEQTQVVINSGALP-VLSNLLSSSPKESIKKEACWTI 346 (514)
T ss_pred HHHccchHHHHHHHcCCCcccccHHHhhcccee-eccHHHHHHHHhcChHH-HHHHHhccCcchhHHHHHHHHH
Confidence 677788899999888777778899999999955 55555777777777775 4445555556666555566544
No 41
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=54.98 E-value=41 Score=38.62 Aligned_cols=129 Identities=22% Similarity=0.319 Sum_probs=91.3
Q ss_pred HHHHHHHhhcC-------HHHHHHHHHHhCCCCCcHHhHHHHHHHH---HHHHHhhhccChhhHHHHHHHHHhcCcHHHH
Q 006478 296 NAYVVSLLKDD-------STFIQELFARLRSPTTLEESKKNLVHFL---HEFCGLSKSLQMVQQLRLFRDLMNEGIFDIV 365 (643)
Q Consensus 296 ~~eIV~~Lq~d-------~~fL~eLf~~l~~~~~~~~~r~d~v~fL---~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi 365 (643)
|.-|+.+|..+ +..++=+|.-+.+++++..-|.-++.|+ +..+.. . .+......+..+..|+.+.+
T Consensus 300 q~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~---~-~~~~l~~l~~~i~~~g~p~~ 375 (501)
T PF13001_consen 300 QEKILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKH---I-SPQILKLLRPVILSQGWPLI 375 (501)
T ss_pred HHHHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhh---c-CHHHHHHHHHHHHhcCcccc
Confidence 45666666544 2345555555566655556677788888 444333 2 23455677777777888877
Q ss_pred HH----HHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 006478 366 TD----ALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 366 ~~----~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LL 435 (643)
.. .-..++...|..+-+.|-.+...+|.++.+ +..++..|-+.| .+.+++++..+-|||-.|+
T Consensus 376 ~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~------d~~li~~LF~sL-~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 376 QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSK------DLSLIEFLFDSL-EDESPEVRVSIQEALSSLA 442 (501)
T ss_pred ccccccCCCcccHHHHHHHHHHHHHHHccCcccccc------cHHHHHHHHHHh-hCcchHHHHHHHHHHHHHH
Confidence 31 123456778999999999999999998765 677888888888 7788999999999988885
No 42
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.26 E-value=21 Score=39.71 Aligned_cols=96 Identities=18% Similarity=0.300 Sum_probs=72.0
Q ss_pred CCCceEEEEeCCCCCceeccceEEEEEEeCCCcceeEEEEecCCCcc-eeEeecCCCcccccccC--eEEEecCCCcc--
Q 006478 13 PMQRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNET-ILLHRISPDDIYRKQED--TIISWRDPEYS-- 87 (643)
Q Consensus 13 ~~~RVKvY~L~~~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~d~~~-lL~~~I~~~~~YqrQqe--TlIvW~e~~~~-- 87 (643)
-.+|+||+.-.+ .+..|+|+|-.......+ +...|+||..-+-.. ||..=+.++-.-+||+- -+||-.-+...
T Consensus 384 ysKkckvfykKd-KEf~dkGvgtl~lkp~~~-~k~qlLvradtnlGnilLN~Ll~kgMkctr~gknnvlIvcvp~~e~t~ 461 (487)
T KOG2724|consen 384 YSKKCKVFYKKD-KEFTDKGVGTLHLKPNDR-GKFQLLVRADTNLGNILLNSLLNKGMKCTRVGKNNVLIVCVPPSESTE 461 (487)
T ss_pred hccccceEEEec-ccccccccceeecccccc-cceeeeehhccchhHHHHHHhhcCCCcceeccCCceEEEEeCCccccc
Confidence 347899988874 689999999887766665 667899988766544 44455666777888874 47887765423
Q ss_pred -ccccccccCccchhHHHHHHHHH
Q 006478 88 -TELALSFQEPTGCSYIWDNICNV 110 (643)
Q Consensus 88 -~dlALSFQe~~GC~~iw~~I~~v 110 (643)
.-|-|.|-..+|.+++-+.|.++
T Consensus 462 p~TmLIRvktad~aD~L~~kI~E~ 485 (487)
T KOG2724|consen 462 PATMLIRVKTADGADKLTDKILEV 485 (487)
T ss_pred ceeEEEEecccchHHHHHHHHHhh
Confidence 35778889999999999999876
No 43
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation []. It contains both SMC (structural maintenance of chromosomes) and non-SMC subunits. Condensin plays an important role during mitosis in the compaction and resolution of chromosomes to remove and prevent catenations that would otherwise inhibit segregation. This is thought to be acheived by the introducion of positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. During interphase condensin promotes clustering of dispersed loci into subnuclear domains and inhibits associations between homologues. In meiosis, condensin has been shown to influence the number of crossover events by regulating programmed double-strand breaks. Roles in gene regulation and lymphocyte development have also been defined. Condensin subunit 1 (known as Cnd1 in Schizosaccharomyces pombe (Fission yeast), and XCAP-D2 in Xenopus laevis laevis) represents one of the non-SMC subunits in the complex. This subunit is phosphorylated at several sites by Cdc2. This phosphorylation process increases the supercoiling activity of condensin [, ]. This entry represents the conserved N-terminal domain of Cnd1.
Probab=51.11 E-value=45 Score=32.41 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCCC----CCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHH
Q 006478 425 CQFLEILRSLLDSYT----LSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCF 500 (643)
Q Consensus 425 ~Q~~e~lk~LLDp~~----~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~f 500 (643)
..+.++|-.+|+.+. -..+++|+|++.|.+-|...|=.| . ......+-..++++||.
T Consensus 99 e~~L~~l~~~L~l~L~rlw~~~~~~e~Fi~l~~r~~y~llE~~------~-------------~~K~~~ik~~if~il~~ 159 (171)
T PF12922_consen 99 ERILEALIKVLQLDLSRLWRTTPEEEEFISLFTRPCYKLLENP------E-------------IVKNKSIKDAIFRILGT 159 (171)
T ss_pred HHHHHHHHHHHcCcHHHHcCCCCchHHHHHHHHHHHHHHHcCh------H-------------hhccHHHHHHHHHHHHH
Confidence 345555555665432 123489999998888776444111 1 01234566789999999
Q ss_pred HHhhcCch
Q 006478 501 CVLHHPYR 508 (643)
Q Consensus 501 cv~~H~~r 508 (643)
||..|.+-
T Consensus 160 ~vk~h~h~ 167 (171)
T PF12922_consen 160 AVKKHNHA 167 (171)
T ss_pred HHHHcccc
Confidence 99999874
No 44
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=49.60 E-value=84 Score=27.93 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=44.1
Q ss_pred cHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 006478 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 434 (643)
Q Consensus 361 ll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~L 434 (643)
|++.+=..+.++|..+|-.|+|-|..+..+-...+=.+. ..++..|++ ++.|.|+.++.- ++.|-.|
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f-----~~IF~~L~k-l~~D~d~~Vr~~-a~~Ld~l 94 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF-----NEIFDALCK-LSADPDENVRSA-AELLDRL 94 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH-HHcCCchhHHHH-HHHHHHH
Confidence 345555677899999999999999998876654332222 225666666 557888888743 3444433
No 45
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=49.07 E-value=2.4e+02 Score=26.83 Aligned_cols=107 Identities=12% Similarity=0.101 Sum_probs=74.1
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcC
Q 006478 312 ELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQD 391 (643)
Q Consensus 312 eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~d 391 (643)
++..+..++....+.+ ..+-++|.+.++-....|.. +.+|+.-|.+.++.+...|..+|-+|+...
T Consensus 3 ~~iekATse~l~~~dw----~~il~icD~I~~~~~~~k~a----------~ral~KRl~~~n~~v~l~AL~LLe~~vkNC 68 (144)
T cd03568 3 DLVEKATDEKLTSENW----GLILDVCDKVKSDENGAKDC----------LKAIMKRLNHKDPNVQLRALTLLDACAENC 68 (144)
T ss_pred HHHHHHcCccCCCcCH----HHHHHHHHHHhcCCccHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 4555555554433332 34457787776544444543 456777788999999999999999999999
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 006478 392 PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 392 p~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LL 435 (643)
...++..+.+ ..+++.|.+.+-...++.++.-+.+.++.+=
T Consensus 69 G~~fh~evas---k~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 69 GKRFHQEVAS---RDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred CHHHHHHHhh---HHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 8888876654 3467777766655577888887777777764
No 46
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=48.51 E-value=4.2e+02 Score=31.36 Aligned_cols=141 Identities=19% Similarity=0.227 Sum_probs=76.0
Q ss_pred cccchhhHHhhHHHHHhhHH-HHHHHhhcCHHHHHHHHH----HhCC--CCCcHHhHHHHHHHHHHHHHhh-hccChhhH
Q 006478 278 RVLDEATVANLNSIIHGNNA-YVVSLLKDDSTFIQELFA----RLRS--PTTLEESKKNLVHFLHEFCGLS-KSLQMVQQ 349 (643)
Q Consensus 278 r~lDD~t~s~LnS~I~fN~~-eIV~~Lq~d~~fL~eLf~----~l~~--~~~~~~~r~d~v~fL~e~c~~a-k~lq~~~r 349 (643)
+.+-.+. ++=|++.+---+ -+++.+.+++.|+..+-. .+.+ ....-|-. +-+|.+| +|..+
T Consensus 230 ~hf~~n~-smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~A-------r~v~~~~~~nv~~--- 298 (898)
T COG5240 230 EHFRGNA-SMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAA-------RAVCALSEENVGS--- 298 (898)
T ss_pred HHhhccc-ccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHH-------HHHHHHHHhccCH---
Confidence 3333443 444444443333 345567777776655443 3333 11222222 3345544 33322
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHH------HhcC---------------C--c-
Q 006478 350 LRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYV------VRQE---------------G--I- 405 (643)
Q Consensus 350 ~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i------~~q~---------------~--~- 405 (643)
+++..- ..+++..|.+.....|.+|.-||..+..-.|..|...- +..+ | .
T Consensus 299 -~~~~~~-----vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~ 372 (898)
T COG5240 299 -QFVDQT-----VSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEET 372 (898)
T ss_pred -HHHHHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhh
Confidence 233222 35677788888888899998888888888877654211 1111 0 0
Q ss_pred -chHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 006478 406 -PLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 406 -~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LL 435 (643)
.=|--+|-.++.|-+.|.|.-+.+|+|.|-
T Consensus 373 idrLv~~I~sfvhD~SD~FKiI~ida~rsLs 403 (898)
T COG5240 373 IDRLVNLIPSFVHDMSDGFKIIAIDALRSLS 403 (898)
T ss_pred HHHHHHHHHHHHHhhccCceEEeHHHHHHHH
Confidence 112223445666778888888888888884
No 47
>PF05536 Neurochondrin: Neurochondrin
Probab=46.03 E-value=5.4e+02 Score=29.98 Aligned_cols=205 Identities=16% Similarity=0.204 Sum_probs=116.9
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcC-------CChhhHHhh
Q 006478 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQS-------QDKKLVLTG 380 (643)
Q Consensus 308 ~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~-------~d~~ir~~~ 380 (643)
.-+.+....++..+ ++.|.-++.++.-+|. +.......|...|.++ | ++++.-.|.. +....+..|
T Consensus 5 ~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~-~~~~~~~~~~~v~~ai---g-~~Fl~RLL~t~~~~~~~~~~~~~~La 77 (543)
T PF05536_consen 5 ASLEKCLSLLKSAD--DTERFAGLLLVTKLLD-ADDEDSQTRRRVFEAI---G-FKFLDRLLRTGSVPSDCPPEEYLSLA 77 (543)
T ss_pred HHHHHHHHHhccCC--cHHHHHHHHHHHHcCC-CchhhHHHHHHHHHhc---C-hhHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 45778888888765 7889999999988777 3333333344455433 4 5777777765 234567889
Q ss_pred HHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHH
Q 006478 381 TDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQL 460 (643)
Q Consensus 381 tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L 460 (643)
.-||.+... +|.+.++.-+ ..-+-.|++.+....+.++..-..+.|..+.-. -.|+ . .+.....++.|
T Consensus 78 vsvL~~f~~-~~~~a~~~~~----~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~--~~G~--~---aLl~~g~v~~L 145 (543)
T PF05536_consen 78 VSVLAAFCR-DPELASSPQM----VSRIPLLLEILSSSSDLETVDDALQCLLAIASS--PEGA--K---ALLESGAVPAL 145 (543)
T ss_pred HHHHHHHcC-ChhhhcCHHH----HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC--cHhH--H---HHHhcCCHHHH
Confidence 999988776 7876543211 112446677776666656666666777666521 1121 1 12223456666
Q ss_pred HHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHH
Q 006478 461 IDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRF 540 (643)
Q Consensus 461 ~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf 540 (643)
++-+... ...-+...+++..++.-...+... ++.-.-..++.++.+.....++-.+..++++
T Consensus 146 ~ei~~~~-----------------~~~~E~Al~lL~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~kfell~~ 207 (543)
T PF05536_consen 146 CEIIPNQ-----------------SFQMEIALNLLLNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDKFELLEF 207 (543)
T ss_pred HHHHHhC-----------------cchHHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 5554331 011222333333333333333322 3333334566677777766677777777777
Q ss_pred HHHHhcCCh
Q 006478 541 VRTILSRHD 549 (643)
Q Consensus 541 ~R~ii~l~D 549 (643)
+-..+...+
T Consensus 208 L~~~L~~~~ 216 (543)
T PF05536_consen 208 LSAFLPRSP 216 (543)
T ss_pred HHHhcCcCC
Confidence 777766663
No 48
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=44.04 E-value=1.7e+02 Score=33.79 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhhhccC-hhhHHHHHHHHHhcCcHHHHHHH---Hc-CC--ChhhHHhhHHHHHHHHhcChHHHHHHH
Q 006478 327 KKNLVHFLHEFCGLSKSLQ-MVQQLRLFRDLMNEGIFDIVTDA---LQ-SQ--DKKLVLTGTDILILFLNQDPNLLRSYV 399 (643)
Q Consensus 327 r~d~v~fL~e~c~~ak~lq-~~~r~~~f~~L~~~gll~vi~~~---L~-~~--d~~ir~~~tdIl~~iie~dp~lvR~~i 399 (643)
..+.+.+|++.+.-++.-+ ...+..+.++|-+.|.-.++... +. +. ...+|.+|+.-|--+..++|..+|..+
T Consensus 440 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l 519 (574)
T smart00638 440 LEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVL 519 (574)
T ss_pred HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 3567777777766654322 33345677889888876655433 33 22 245899999999888999999999876
Q ss_pred Hh
Q 006478 400 VR 401 (643)
Q Consensus 400 ~~ 401 (643)
+.
T Consensus 520 ~~ 521 (574)
T smart00638 520 LP 521 (574)
T ss_pred HH
Confidence 64
No 49
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=43.75 E-value=4.7e+02 Score=28.59 Aligned_cols=170 Identities=15% Similarity=0.222 Sum_probs=89.6
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHH----HHHHHHhc-CCcchHHHHHHHH---------
Q 006478 350 LRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNL----LRSYVVRQ-EGIPLLGLLVKGM--------- 415 (643)
Q Consensus 350 ~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~l----vR~~i~~q-~~~~Ll~~Li~~l--------- 415 (643)
.+++..+.+.|++..+-..|..=+-..|..++.|+..++-+.+.. ...|+.++ ++ ++..|++.-
T Consensus 66 ~qLa~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~pe--il~~L~~gy~~~dial~~ 143 (335)
T PF08569_consen 66 AQLAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPE--ILDILLRGYENPDIALNC 143 (335)
T ss_dssp HHHHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--TH--HHHHHHHGGGSTTTHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHH--HHHHHHHHhcCccccchH
Confidence 567778888888888888887777777777777777777665432 24455443 21 122222221
Q ss_pred -----------------hc------------CCChhHHHHHHHHHHHhcCCCCCCchhh---hHHHHHHHHhhHHHHHHH
Q 006478 416 -----------------IT------------DFGEDMHCQFLEILRSLLDSYTLSGAQR---DTIIEIFYEKHLGQLIDV 463 (643)
Q Consensus 416 -----------------l~------------d~~~gl~~Q~~e~lk~LLDp~~~~~~e~---d~fl~~FY~~~~~~L~~p 463 (643)
+. .++-.+.+-.+..++.||-. ++ .+|+..-|+.... .+.-
T Consensus 144 g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~------hk~~~a~fl~~n~d~ff~-~~~~ 216 (335)
T PF08569_consen 144 GDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR------HKKLVAEFLSNNYDRFFQ-KYNK 216 (335)
T ss_dssp HHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS------SHHHHHHHHHHTHHHHHH-HHHH
T ss_pred HHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHH-HHHH
Confidence 11 12223333333333333211 12 2566666665555 2333
Q ss_pred HHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchh-hhHHhhccHHHHHHHHhhcccchhhHHHHHHHH
Q 006478 464 ITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI-KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVR 542 (643)
Q Consensus 464 l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~-k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R 542 (643)
|+.+ + +. .++.+.+-.|-||| ...|.+.+ ..|+-+.+-+.-+..|++.+.|.++.-|...||
T Consensus 217 Ll~s-~---------NY----vtkrqslkLL~ell---ldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFK 279 (335)
T PF08569_consen 217 LLES-S---------NY----VTKRQSLKLLGELL---LDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFK 279 (335)
T ss_dssp HCT--S---------SH----HHHHHHHHHHHHHH---HSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred HccC-C---------Ce----EeehhhHHHHHHHH---HchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHH
Confidence 3331 0 00 12233333344442 35555555 567777778888999999999999999988777
Q ss_pred HHh
Q 006478 543 TIL 545 (643)
Q Consensus 543 ~ii 545 (643)
-.|
T Consensus 280 vFV 282 (335)
T PF08569_consen 280 VFV 282 (335)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 50
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=41.49 E-value=65 Score=35.30 Aligned_cols=93 Identities=13% Similarity=0.254 Sum_probs=68.7
Q ss_pred hHHhhccHHHHHHHHhh-cccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHH-HhHhCCC--CcchHHHHHHH
Q 006478 511 CNFLLNNVVDKVLLLTR-RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDA-FVANGNR--YNLLNSAVLEL 586 (643)
Q Consensus 511 ~~il~~~l~~kv~~Ll~-~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~-~~~n~~r--~NLlnSa~Lel 586 (643)
-|+++++++.++..+-. ....-.+..++||+.+.|+.-++= .+...++..|++++ +..-|.. ..-......+|
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p---lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~l 79 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP---LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVEL 79 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc---cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 38899999999999954 455688999999999999887664 55566999999999 7765544 56677777888
Q ss_pred HHHHHh--cChHHHHHHHHHHh
Q 006478 587 FEYIRK--ENLKSLVKYIVDSF 606 (643)
Q Consensus 587 fe~Ir~--enik~Li~hlve~y 606 (643)
+..|.. ..-..|+.+..+.-
T Consensus 80 L~~lc~~i~~~P~ll~~ff~~~ 101 (353)
T PF10257_consen 80 LNTLCSKIRKDPSLLNFFFESS 101 (353)
T ss_pred HHHHHHHHHhCHHHHHHHhcCC
Confidence 777743 23345555555533
No 51
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=41.19 E-value=1.3e+02 Score=24.88 Aligned_cols=55 Identities=16% Similarity=0.067 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHH
Q 006478 362 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEIL 431 (643)
Q Consensus 362 l~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~l 431 (643)
.+.+..++.+++..+|..++.-|..+= +...+..|.+.+-.+.+..++....++|
T Consensus 33 ~~~L~~~l~d~~~~vr~~a~~aL~~i~---------------~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 33 IPALIELLKDEDPMVRRAAARALGRIG---------------DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCH---------------HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC---------------CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 566677778888888887777665441 1223456667676777777777666654
No 52
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=40.69 E-value=4.4e+02 Score=27.63 Aligned_cols=164 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchh
Q 006478 365 VTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQ 444 (643)
Q Consensus 365 i~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e 444 (643)
+...|.++|..+|..|+..|..+++.=|.-. +-+++-..|+...++.+ +...++..- ..++..|+.-.......
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl--~D~~~~~~~-l~gl~~L~~~~~~~~~~ 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRL--DDHACVQPA-LKGLLALVKMKNFSPES 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHh--ccHhhHHHH-HHHHHHHHhCcCCChhh
Q ss_pred hhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHH
Q 006478 445 RDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLL 524 (643)
Q Consensus 445 ~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~ 524 (643)
-..+++.+++++ .+.......=..+.+|+-+.+.+|.--+ .=+..+.+..+++
T Consensus 78 ~~~i~~~l~~~~-------------------------~~q~~~q~~R~~~~~ll~~l~~~~~~~l--~~~~~~fv~~~i~ 130 (262)
T PF14500_consen 78 AVKILRSLFQNV-------------------------DVQSLPQSTRYAVYQLLDSLLENHREAL--QSMGDDFVYGFIQ 130 (262)
T ss_pred HHHHHHHHHHhC-------------------------ChhhhhHHHHHHHHHHHHHHHHHhHHHH--HhchhHHHHHHHH
Q ss_pred Hhh-cccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHH
Q 006478 525 LTR-RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAF 569 (643)
Q Consensus 525 Ll~-~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~ 569 (643)
++. -|+.=--+-+.+.+|.++..=| + .+..+-+++++
T Consensus 131 ~~~gEkDPRnLl~~F~l~~~i~~~~~-------~-~~~~e~lFd~~ 168 (262)
T PF14500_consen 131 LIDGEKDPRNLLLSFKLLKVILQEFD-------I-SEFAEDLFDVF 168 (262)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhcc-------c-chhHHHHHHHh
No 53
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.11 E-value=3.3e+02 Score=33.48 Aligned_cols=247 Identities=15% Similarity=0.159 Sum_probs=137.1
Q ss_pred HHHHHHhhcCHHHHHHHHH--------Hh---CCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHH
Q 006478 297 AYVVSLLKDDSTFIQELFA--------RL---RSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIV 365 (643)
Q Consensus 297 ~eIV~~Lq~d~~fL~eLf~--------~l---~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi 365 (643)
.-|+.-.+.+++-|++|+. .| ..+..+....--+|++|.-||.=+ .-.|++|.+.||-.++
T Consensus 360 ~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~--------pl~~~tl~k~~I~~~L 431 (1051)
T KOG0168|consen 360 TRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGS--------PLLFRTLLKLDIADTL 431 (1051)
T ss_pred HHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCC--------hHHHHHHHHhhHHHHH
Confidence 3466667777777777774 11 122233345566788887776532 3478999999999999
Q ss_pred HHHHcCCChhhHHh-----------hHHHHHHHHhcCh------------HHHHHHHHhc--------CC----cchHHH
Q 006478 366 TDALQSQDKKLVLT-----------GTDILILFLNQDP------------NLLRSYVVRQ--------EG----IPLLGL 410 (643)
Q Consensus 366 ~~~L~~~d~~ir~~-----------~tdIl~~iie~dp------------~lvR~~i~~q--------~~----~~Ll~~ 410 (643)
++.|...++.-... -.+....+++.=| ++++..+--+ +| ++--++
T Consensus 432 ~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~ 511 (1051)
T KOG0168|consen 432 KRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNI 511 (1051)
T ss_pred HHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchh
Confidence 99997554421111 1122222222222 2222211111 11 111122
Q ss_pred HHHHHh-cCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHH
Q 006478 411 LVKGMI-TDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPE 489 (643)
Q Consensus 411 Li~~ll-~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (643)
..+++- ...|+|-.--.-+.++ .|+..--..+..+-++-|=+..++.|++...+.. ++.++ -.
T Consensus 512 ~~ri~~q~~~~~~t~~~~~dkl~--~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA-----------~~~VR---~k 575 (1051)
T KOG0168|consen 512 DSRIIEQINEDTGTSRKQQDKLN--GSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSA-----------NPDVR---YK 575 (1051)
T ss_pred hhhhhhhhccCcccchhhhhhcC--CchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccC-----------Cchhh---HH
Confidence 222221 0122222111112221 1111100012335778888888899988764421 11222 23
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHH
Q 006478 490 ILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAF 569 (643)
Q Consensus 490 ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~ 569 (643)
-|.-|..+.+|.- +--|+--+-++++...++-++.+++-.+.+.||...--+...==|.|-.|+++.++|.-|=.+.
T Consensus 576 cL~Ailrlvy~s~---seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~ 652 (1051)
T KOG0168|consen 576 CLSAILRLVYFSN---SELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLS 652 (1051)
T ss_pred HHHHHHHHHhhCC---HHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHh
Confidence 5677778877765 2234445555567777777888999999999999887766665566788999999999887776
Q ss_pred h
Q 006478 570 V 570 (643)
Q Consensus 570 ~ 570 (643)
.
T Consensus 653 ~ 653 (1051)
T KOG0168|consen 653 V 653 (1051)
T ss_pred c
Confidence 5
No 54
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=40.09 E-value=2.6e+02 Score=27.05 Aligned_cols=125 Identities=17% Similarity=0.110 Sum_probs=80.4
Q ss_pred HHHHHHHcCCChhhHHhhHHHHHHHHhcC-hHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCC
Q 006478 363 DIVTDALQSQDKKLVLTGTDILILFLNQD-PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS 441 (643)
Q Consensus 363 ~vi~~~L~~~d~~ir~~~tdIl~~iie~d-p~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~ 441 (643)
.-+...|++.+..-|-.|+-++...++++ +..+.++ +...+..|...+-...++.++.-...+|..|++--.
T Consensus 28 ~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~-----~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~-- 100 (165)
T PF08167_consen 28 TRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSH-----GSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR-- 100 (165)
T ss_pred HHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHH-----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--
Confidence 34566778889999999999999999998 6655222 355667777766666666666666777777764211
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHH
Q 006478 442 GAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNF 513 (643)
Q Consensus 442 ~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~i 513 (643)
.+.++-.-+-...++.++.+++....+ .......++.|.-|+.+|+--+|.|-
T Consensus 101 --~~p~l~Rei~tp~l~~~i~~ll~l~~~-----------------~~~~~~~l~~L~~ll~~~ptt~rp~~ 153 (165)
T PF08167_consen 101 --GKPTLTREIATPNLPKFIQSLLQLLQD-----------------SSCPETALDALATLLPHHPTTFRPFA 153 (165)
T ss_pred --CCCchHHHHhhccHHHHHHHHHHHHhc-----------------cccHHHHHHHHHHHHHHCCccccchH
Confidence 111122222233466677776653110 23345678999999999998776653
No 55
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=38.92 E-value=3.3e+02 Score=25.45 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=72.7
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHh
Q 006478 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (643)
Q Consensus 310 L~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie 389 (643)
+.++.....++....+.+ - .+-++|.+.+.-....+.. ..+|+.-|.+.++.+...|..+|-+|+.
T Consensus 6 ~~~li~kATs~~~~~~Dw---~-~~l~icD~i~~~~~~~kea----------~~~l~krl~~~~~~vq~~aL~lld~lvk 71 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDW---S-LILEICDLINSSPDGAKEA----------ARALRKRLKHGNPNVQLLALTLLDALVK 71 (140)
T ss_dssp HHHHHHHHT-TTSSS--H---H-HHHHHHHHHHTSTTHHHHH----------HHHHHHHHTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCCH---H-HHHHHHHHHHcCCccHHHH----------HHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 556666676665544432 2 2236777766554444543 4677788899999999999999999999
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhcCCChh---HHHHHHHHHHHhc
Q 006478 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGED---MHCQFLEILRSLL 435 (643)
Q Consensus 390 ~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~g---l~~Q~~e~lk~LL 435 (643)
+....++..+.++ .+++.|.+.+-...... ++..+.+.+..+=
T Consensus 72 Ncg~~f~~ev~~~---~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 72 NCGPRFHREVASK---EFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HSHHHHHHHHTSH---HHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhHH---HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 9977777765543 47778777666544443 7877777766663
No 56
>KOG0864 consensus Ran-binding protein RANBP1 and related RanBD domain proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.19 E-value=17 Score=37.03 Aligned_cols=42 Identities=24% Similarity=0.466 Sum_probs=30.6
Q ss_pred Cce-EEEEe-CCCCCceeccceEEEEEEeCCCcceeEEEEecCC
Q 006478 15 QRV-KVYRL-NDDGKWDDQGTGHVTVDSMERSEELCLFVIDEED 56 (643)
Q Consensus 15 ~RV-KvY~L-~~~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~d 56 (643)
.|+ |+|.. ++..+|..+|||.|-.....+.....++.+.-..
T Consensus 62 ~~s~~l~~f~~~~kq~kerG~g~~~~~kn~~~g~~r~~m~rdst 105 (215)
T KOG0864|consen 62 QRSEKLYVFDNETKQWKERGTGKVKLLKNKDTGSTRDLMRRDST 105 (215)
T ss_pred hhhhhHHhhhhhhhhhhccCCcceEeeecCCCCcceeeeeeccc
Confidence 466 88888 4578999999999998765555555666655544
No 57
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=36.83 E-value=1.8e+02 Score=34.45 Aligned_cols=118 Identities=15% Similarity=0.256 Sum_probs=76.5
Q ss_pred cHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHH
Q 006478 487 KPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIV 566 (643)
Q Consensus 487 ~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~ 566 (643)
+..+++-||-++ +.--+ .|.+|+++|.+.++..++..++--++-.+++++|..+-..|+-.....- .++++-.+
T Consensus 436 ~~~~lgai~NlV---mefs~--~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~-~ki~a~~i 509 (678)
T KOG1293|consen 436 MGITLGAICNLV---MEFSN--LKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLL-AKIPANLI 509 (678)
T ss_pred HHHHHHHHHHHH---hhccc--HHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHH-HHhhHHHH
Confidence 344566666553 22222 3779999999999999999888888999999999998887764433222 23444444
Q ss_pred HHHhHhCCCCcchHHHHHHHHHHHHhcChHHHHHHHHHHhHhccccc
Q 006478 567 DAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNF 613 (643)
Q Consensus 567 ~~~~~n~~r~NLlnSa~Lelfe~Ir~enik~Li~hlve~y~~~l~~i 613 (643)
..|..+.+ =-+--.|+-++.-. .-|-+.-+.|+++.|++.+.++
T Consensus 510 ~~l~nd~d--~~Vqeq~fqllRNl-~c~~~~svdfll~~~~~~ld~i 553 (678)
T KOG1293|consen 510 LDLINDPD--WAVQEQCFQLLRNL-TCNSRKSVDFLLEKFKDVLDKI 553 (678)
T ss_pred HHHHhCCC--HHHHHHHHHHHHHh-hcCcHHHHHHHHHhhhHHHHHH
Confidence 44444433 23334444443221 1455688999999999888664
No 58
>PRK09687 putative lyase; Provisional
Probab=36.26 E-value=2.4e+02 Score=29.77 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcC---cHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHH
Q 006478 349 QLRLFRDLMNEG---IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHC 425 (643)
Q Consensus 349 r~~~f~~L~~~g---ll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~ 425 (643)
|...-..|...| .++.+...+.++|+.+|..|+.+|..+-+.+.. ...-+..|...+..|+++.++.
T Consensus 40 R~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----------~~~a~~~L~~l~~~D~d~~VR~ 109 (280)
T PRK09687 40 RISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----------QDNVFNILNNLALEDKSACVRA 109 (280)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----------hHHHHHHHHHHHhcCCCHHHHH
Confidence 444444444444 566677778899999999999888876543321 0112445556667888888888
Q ss_pred HHHHHHHHhc
Q 006478 426 QFLEILRSLL 435 (643)
Q Consensus 426 Q~~e~lk~LL 435 (643)
+...+|--+-
T Consensus 110 ~A~~aLG~~~ 119 (280)
T PRK09687 110 SAINATGHRC 119 (280)
T ss_pred HHHHHHhccc
Confidence 8888776663
No 59
>COG3479 Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.14 E-value=19 Score=34.03 Aligned_cols=20 Identities=35% Similarity=0.783 Sum_probs=17.9
Q ss_pred EEecCCCccccccccccCccc
Q 006478 79 ISWRDPEYSTELALSFQEPTG 99 (643)
Q Consensus 79 IvW~e~~~~~dlALSFQe~~G 99 (643)
++|+||. |+|.||.|.-.++
T Consensus 66 vsWtEPT-GTdVaL~f~pne~ 85 (175)
T COG3479 66 VSWTEPT-GTDVALTFNPNEY 85 (175)
T ss_pred EEeeCCC-CceEEEEeccccc
Confidence 6899997 9999999987776
No 60
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.97 E-value=7.2e+02 Score=28.50 Aligned_cols=199 Identities=17% Similarity=0.210 Sum_probs=117.2
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCChhhH------HhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcC-CChh
Q 006478 350 LRLFRDLMNEGIFDIVTDALQSQDKKLV------LTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD-FGED 422 (643)
Q Consensus 350 ~~~f~~L~~~gll~vi~~~L~~~d~~ir------~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d-~~~g 422 (643)
..++.+|++.+++..+---+..=|.+++ ....-++-.+++.+|+.... +++| .|+.+|.+.+... .-.+
T Consensus 166 evLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~-~~e~---~ll~WLL~rl~~k~~f~a 241 (536)
T KOG2734|consen 166 EVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTE-IVEQ---GLLSWLLKRLKGKAAFDA 241 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHH-HHHh---hHHHHHHHHHhcccCcch
Confidence 4688999999999888766653333332 23335566788888885443 4444 5777777654332 3345
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHH
Q 006478 423 MHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCV 502 (643)
Q Consensus 423 l~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv 502 (643)
-+.-.+|++-++|..++-.. .+-.-| ..++.|++-+.. ... .++. +.-..+...++.+-||-|+
T Consensus 242 Nk~YasEiLaillq~s~e~~-~~~~~l-----~GiD~lL~~la~----yk~-~dP~-----~~~E~EmmeNLFdcLCs~l 305 (536)
T KOG2734|consen 242 NKQYASEILAILLQNSDENR-KLLGPL-----DGIDVLLRQLAV----YKR-HDPA-----TVDEEEMMENLFDCLCSLL 305 (536)
T ss_pred hHHHHHHHHHHHhccCchhh-hhhcCc-----ccHHHHHhhcch----hhc-cCCC-----CcCHHHHHHHHHHHHHHHh
Confidence 56677899999997655210 000000 012333333322 111 1100 1123467788899999888
Q ss_pred hhcCchhhhHHhhccHH-HHHHHHhhcccchhhHHHHHHHHHHhcCCh-hHHHHHHHhhCChHHHHHHHhHh
Q 006478 503 LHHPYRIKCNFLLNNVV-DKVLLLTRRREKYLVVAAVRFVRTILSRHD-EHLINHFVKNNLLKPIVDAFVAN 572 (643)
Q Consensus 503 ~~H~~r~k~~il~~~l~-~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D-~fy~ryiik~~lf~Pv~~~~~~n 572 (643)
.+-.-|- .|+....+ ...+.+ +- .|..+=+|+|++-.+..-.| .=+..-.+.-.=++.||.+|...
T Consensus 306 m~~~nr~--~Fl~~EGlqLm~Lml-r~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~ 373 (536)
T KOG2734|consen 306 MAPANRE--RFLKGEGLQLMNLML-RE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKT 373 (536)
T ss_pred cChhhhh--hhhccccHHHHHHHH-HH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhC
Confidence 8766543 45555444 444333 32 67888999999999876555 13445556667778888888743
No 61
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=34.71 E-value=99 Score=32.76 Aligned_cols=50 Identities=12% Similarity=0.442 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHhhhhcchhHhHHhhhcccCCC
Q 006478 170 FFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPD 230 (643)
Q Consensus 170 Yi~kL~~lF~~~Edle~~~~L~~L~~Ivk~iillNd~~i~E~llsDe~i~~vvG~LEYDp~ 230 (643)
.-.+|-.|.+.|.+-..-+....+-.+||.++.. ++-. -.++.|||+||+
T Consensus 192 lsEnLekLl~ea~erS~~~~~~~~~~lvrklL~I---------isRP--ARLLEcLEFdPe 241 (282)
T PF08926_consen 192 LSENLEKLLQEAHERSESEEVAFVTQLVRKLLII---------ISRP--ARLLECLEFDPE 241 (282)
T ss_dssp HHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHH---------HSS---------------
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH---------hcch--hhhhhhhccChH
Confidence 4567778888888877788899999999998742 1111 256789999998
No 62
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=33.72 E-value=7e+02 Score=27.69 Aligned_cols=62 Identities=19% Similarity=0.395 Sum_probs=46.9
Q ss_pred HHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHH
Q 006478 333 FLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYV 399 (643)
Q Consensus 333 fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i 399 (643)
+|.-+..+.++.+. .-+...+- .|++.+-.+|..+|..++.++.++|..+++..|..+-.|+
T Consensus 343 yL~ALs~ll~~vP~---~vl~~~l~--~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl 404 (415)
T PF12460_consen 343 YLTALSHLLKNVPK---SVLLPELP--TLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL 404 (415)
T ss_pred HHHHHHHHHhhCCH---HHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 45566666676652 22222222 2889999999999999999999999999999999888765
No 63
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=33.01 E-value=4.3e+02 Score=25.03 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=71.7
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHh
Q 006478 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (643)
Q Consensus 310 L~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie 389 (643)
+.++.....++....+. ....-|+|.+.++-+...|.. ..+|+.-|++.++.+...|..+|-+|+.
T Consensus 5 ~~~~I~kATs~~l~~~d----w~~ileicD~In~~~~~~k~a----------~ral~krl~~~n~~vql~AL~LLe~~vk 70 (142)
T cd03569 5 FDELIEKATSELLGEPD----LASILEICDMIRSKDVQPKYA----------MRALKKRLLSKNPNVQLYALLLLESCVK 70 (142)
T ss_pred HHHHHHHHcCcccCccC----HHHHHHHHHHHhCCCCCHHHH----------HHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 55666666665432222 334456777765443334433 4667777889999999999999999999
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 006478 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 390 ~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LL 435 (643)
+--..++..+.+ ..+++.|++.+-...++.++..+.+.+..+=
T Consensus 71 NCG~~fh~evas---~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 71 NCGTHFHDEVAS---REFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HCCHHHHHHHhh---HHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 876556654443 4477777776655677777777777766664
No 64
>PF06334 Orthopox_A47: Orthopoxvirus A47 protein; InterPro: IPR009402 This family consists of several Orthopoxvirus A47 proteins. The function of this family is unknown.
Probab=32.82 E-value=31 Score=34.02 Aligned_cols=85 Identities=20% Similarity=0.402 Sum_probs=58.1
Q ss_pred HHHHHHhhcCh---hhHHHH---HHHHhcchHHHHHHHHHHHHHHh--------------------cCChhhHHHHHHHH
Q 006478 144 LILKTVTESGI---ADQMRL---TELILNDQDFFRKLMDLFRICED--------------------LENIDGLHMIFKII 197 (643)
Q Consensus 144 ~I~~~i~~~~~---~~r~~l---~~~i~~~~~Yi~kL~~lF~~~Ed--------------------le~~~~L~~L~~Iv 197 (643)
+|.+++..++. ..|-++ ..-++.++=.++.|++-.+..|. ..+.....-+-+..
T Consensus 68 ~I~E~I~Ks~~~DiDKR~KL~~NIKs~~~NPF~i~GL~~SLE~~~~~~~~~YSSVMILGef~iin~~~~~a~FeFi~~LL 147 (244)
T PF06334_consen 68 EIFEIIQKSNSMDIDKRIKLMHNIKSMMINPFMIKGLMESLENFDPDNKMSYSSVMILGEFNIINISDNEATFEFINSLL 147 (244)
T ss_pred HHHHHHHhccccCHHHHHHHHHhhHHHhcCHHHHHHHHHHHhccCCCCCcceeeeEEeeccceEeccCchhHHHHHHHHH
Confidence 56666654432 234444 23344566667777766555432 22345566678899
Q ss_pred HHHHhcCCh--hhHhhhhcchhHhHHhhhcccC
Q 006478 198 KGIILLNSP--QIFEKIFGDELMMDIIGSLEYD 228 (643)
Q Consensus 198 k~iillNd~--~i~E~llsDe~i~~vvG~LEYD 228 (643)
|++++||.. .|+|+..+.|....-+.|+||=
T Consensus 148 KSL~lLNtrQ~KllEy~I~NDlLY~~I~~lEYI 180 (244)
T PF06334_consen 148 KSLLLLNTRQLKLLEYAINNDLLYEHINALEYI 180 (244)
T ss_pred HHHHhhcchhhhHHHHhhhhhHHHHHHHHHHHH
Confidence 999999965 6899999999999999999993
No 65
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=32.52 E-value=71 Score=22.37 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=30.2
Q ss_pred hhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHh
Q 006478 510 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (643)
Q Consensus 510 k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii 545 (643)
+..+...+.+..++.|+++.+.-++-.|+..+|++.
T Consensus 5 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 456777888999999999888899999999998864
No 66
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=32.04 E-value=41 Score=38.22 Aligned_cols=90 Identities=16% Similarity=0.279 Sum_probs=64.8
Q ss_pred ceEEEEeCC-CCCceeccc-eEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCcccccccCeEEEecCCCcccccccc
Q 006478 16 RVKVYRLND-DGKWDDQGT-GHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALS 93 (643)
Q Consensus 16 RVKvY~L~~-~~~W~D~GT-G~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~e~~~~~dlALS 93 (643)
=|++|.-.. -+.|.-+|+ |-+..++.--.....|-..+-.+++.|-+..+-.+=.|++-+ |..-=-|.+ .+-..|+
T Consensus 44 VVqLY~a~p~~~~W~~~~~~Gal~lVkD~~~rsyFlrl~di~~~rliWdqELY~nf~y~q~r-~ffhtFegd-dc~aGLn 121 (569)
T KOG3671|consen 44 VVQLYKAYPDPNHWNKTGLCGALCLVKDNAQRSYFLRLVDIVNNRLIWDQELYQNFEYRQPR-TFFHTFEGD-DCQAGLN 121 (569)
T ss_pred HHHHHhhcCChhhhccccCceeEEEeeccccceeeeEEeeecCceeeehHHhhhhceeccCc-cceeeeccc-cceeeec
Confidence 377888753 358999999 998877644445567777787777877777888877777755 444334455 3588999
Q ss_pred ccCccchhHHHHHH
Q 006478 94 FQEPTGCSYIWDNI 107 (643)
Q Consensus 94 FQe~~GC~~iw~~I 107 (643)
|=+-+-|+...+.+
T Consensus 122 F~~E~EA~~F~k~V 135 (569)
T KOG3671|consen 122 FASEEEAQKFRKKV 135 (569)
T ss_pred ccCHHHHHHHHHHH
Confidence 99999998876654
No 67
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=31.86 E-value=6.4e+02 Score=30.10 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=44.6
Q ss_pred HHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 006478 356 LMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 356 L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LL 435 (643)
++..|..+.+...+.+.|.++|..+.=.|-.++-.+-. .+.. +........++..+.+|++.|+|+|+++.||-|.
T Consensus 457 fl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de-~~k~---~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 457 FLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE-EEKF---QLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH-HHHH---HHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 34555556666666666666664444333222211111 1100 1112233455667789999999999999999998
Q ss_pred CC
Q 006478 436 DS 437 (643)
Q Consensus 436 Dp 437 (643)
+.
T Consensus 533 c~ 534 (678)
T KOG1293|consen 533 CN 534 (678)
T ss_pred cC
Confidence 75
No 68
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.49 E-value=1.1e+03 Score=29.14 Aligned_cols=252 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred hhHHhhHHHHHhhHHHHHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcH
Q 006478 283 ATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIF 362 (643)
Q Consensus 283 ~t~s~LnS~I~fN~~eIV~~Lq~d~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll 362 (643)
.+...|++++-.--.+.=+.|...|.=+..+...++|.-. .-|.+++.||.++..=.-+.| |..-|.+..++ ||
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE--~IRNe~iLlL~eL~k~n~~IQ---KlVAFENaFer-Lf 214 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE--PIRNEAILLLSELVKDNSSIQ---KLVAFENAFER-LF 214 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh--hhchhHHHHHHHHHccCchHH---HHHHHHHHHHH-HH
Q ss_pred HHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCc--chHHHHHHHHhcC-CChhHHHH-------HHHHHH
Q 006478 363 DIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGI--PLLGLLVKGMITD-FGEDMHCQ-------FLEILR 432 (643)
Q Consensus 363 ~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~--~Ll~~Li~~ll~d-~~~gl~~Q-------~~e~lk 432 (643)
++|+-==..+..-+.--+.=.+..++-.+.+ .+-+++..+. .|..+|..-...| ...|--.| +.++++
T Consensus 215 sIIeeEGg~dGgIVveDCL~ll~NLLK~N~S--NQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr 292 (970)
T KOG0946|consen 215 SIIEEEGGLDGGIVVEDCLILLNNLLKNNIS--NQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVR 292 (970)
T ss_pred HHHHhcCCCCCcchHHHHHHHHHHHHhhCcc--hhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHH
Q ss_pred HhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc-CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhh
Q 006478 433 SLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS-CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKC 511 (643)
Q Consensus 433 ~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~ 511 (643)
.|..|.+-.+.....-=-.+=.+.++.|..-++.. .|.+. -+....-+-|.+--|-+...+-.+-
T Consensus 293 ~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dI--------------ltesiitvAevVRgn~~nQ~~F~~v 358 (970)
T KOG0946|consen 293 SLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADI--------------LTESIITVAEVVRGNARNQDEFADV 358 (970)
T ss_pred HhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhH--------------HHHHHHHHHHHHHhchHHHHHHhhc
Q ss_pred HHhhcc-----HHHHHHHHhhcccc-hhhHHHHHHHHHHhcCChhHHHHHH
Q 006478 512 NFLLNN-----VVDKVLLLTRRREK-YLVVAAVRFVRTILSRHDEHLINHF 556 (643)
Q Consensus 512 ~il~~~-----l~~kv~~Ll~~~~k-~L~LaAlRf~R~ii~l~D~fy~ryi 556 (643)
-+-..+ ++--...+..+++. -+|.|.++|||+.+..||+-=-+.+
T Consensus 359 ~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l 409 (970)
T KOG0946|consen 359 TAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFL 409 (970)
T ss_pred cCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHH
No 69
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.41 E-value=1.1e+03 Score=29.45 Aligned_cols=64 Identities=22% Similarity=0.179 Sum_probs=48.1
Q ss_pred HHHcCCChhhHHhhHHHHHHHHhc---ChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCC
Q 006478 367 DALQSQDKKLVLTGTDILILFLNQ---DPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT 439 (643)
Q Consensus 367 ~~L~~~d~~ir~~~tdIl~~iie~---dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~ 439 (643)
..++++---+|.-||+++...-+. ||+.+++ .+....+.|.+|.+..++.+.+-||+.++-...
T Consensus 469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~---------ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSE---------ALELTHNCLLNDNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred HhhcCchhHHHHHHHHHHHHHHhccCCChHHHHH---------HHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence 344666667899999999887643 4565555 355667788889999999999999999985533
No 70
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=30.95 E-value=3.2e+02 Score=24.03 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=56.8
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHH
Q 006478 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (643)
Q Consensus 308 ~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~i 387 (643)
.-+++....+.||.. .-|-.|+..|++++.--. ....--.+++.++...|+++|+=+-..|.-.+..+
T Consensus 3 ~~~~~al~~L~dp~~--PvRa~gL~~L~~Li~~~~----------~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~L 70 (92)
T PF10363_consen 3 ETLQEALSDLNDPLP--PVRAHGLVLLRKLIESKS----------EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAAL 70 (92)
T ss_pred HHHHHHHHHccCCCc--chHHHHHHHHHHHHHcCC----------cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 346777777887764 578888888888776322 11122345677888889999999999999999999
Q ss_pred HhcChHHH
Q 006478 388 LNQDPNLL 395 (643)
Q Consensus 388 ie~dp~lv 395 (643)
.+.+|..+
T Consensus 71 a~~~p~~v 78 (92)
T PF10363_consen 71 ADRHPDEV 78 (92)
T ss_pred HHHChHHH
Confidence 99999843
No 71
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=29.10 E-value=88 Score=29.20 Aligned_cols=73 Identities=10% Similarity=0.220 Sum_probs=50.8
Q ss_pred cHHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHHhH-hCCCC--------cchHHHHHHHH
Q 006478 517 NVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVA-NGNRY--------NLLNSAVLELF 587 (643)
Q Consensus 517 ~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~-n~~r~--------NLlnSa~Lelf 587 (643)
.++..+.+-++.+..++++-|||+++.|+....+-|.+.+.+|- +++..+.. .|+-| -.+-.+.-|+.
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~---~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNS---AQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhH---HHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 45555665566678899999999999999999999999999983 66666654 34322 23444445555
Q ss_pred HHHHh
Q 006478 588 EYIRK 592 (643)
Q Consensus 588 e~Ir~ 592 (643)
+.|..
T Consensus 115 ~~if~ 119 (122)
T cd03572 115 KAIFS 119 (122)
T ss_pred HHHhc
Confidence 55543
No 72
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=28.84 E-value=1.8e+02 Score=30.71 Aligned_cols=78 Identities=15% Similarity=0.386 Sum_probs=55.2
Q ss_pred HHHHHHHHH--HHhhcCchhhhHHhhccHHHHHHHHhh--c---ccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHH
Q 006478 492 SNICELLCF--CVLHHPYRIKCNFLLNNVVDKVLLLTR--R---REKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKP 564 (643)
Q Consensus 492 ~~l~eLL~f--cv~~H~~r~k~~il~~~l~~kv~~Ll~--~---~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~P 564 (643)
..+|-.|.- ||-.|+- .|..|++-+++...--.++ + ..-+|+|++|-.+.+.|..+|.-...|+...+++..
T Consensus 65 nRVcnaLaLlQ~vAshpe-tr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiipl 143 (262)
T PF04078_consen 65 NRVCNALALLQCVASHPE-TRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPL 143 (262)
T ss_dssp HHHHHHHHHHHHHHH-TT-THHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHHcChH-HHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHH
Confidence 445554433 6666765 5568888887755544332 2 236899999999999999999999999999999988
Q ss_pred HHHHHh
Q 006478 565 IVDAFV 570 (643)
Q Consensus 565 v~~~~~ 570 (643)
-+..+.
T Consensus 144 cLr~me 149 (262)
T PF04078_consen 144 CLRIME 149 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877663
No 73
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=28.01 E-value=3.7e+02 Score=26.09 Aligned_cols=74 Identities=15% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCc-------HHHHHHHHcCCChhhHHh
Q 006478 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGI-------FDIVTDALQSQDKKLVLT 379 (643)
Q Consensus 307 ~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gl-------l~vi~~~L~~~d~~ir~~ 379 (643)
+.+++.+++.++|++. .-|+.++. ....|+..|. |.-+-.++.|+|+.||..
T Consensus 24 e~~~~~l~~~L~D~~~--~VR~~al~-------------------~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~ 82 (178)
T PF12717_consen 24 EPYLPNLYKCLRDEDP--LVRKTALL-------------------VLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSL 82 (178)
T ss_pred HhHHHHHHHHHCCCCH--HHHHHHHH-------------------HHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHH
Q ss_pred hHHHHHHHHhc-ChHHHHHHHHh
Q 006478 380 GTDILILFLNQ-DPNLLRSYVVR 401 (643)
Q Consensus 380 ~tdIl~~iie~-dp~lvR~~i~~ 401 (643)
|.-.+..+... +|+.+.+.+..
T Consensus 83 A~~~~~e~~~~~~~~~i~~~~~e 105 (178)
T PF12717_consen 83 ARSFFSELLKKRNPNIIYNNFPE 105 (178)
T ss_pred HHHHHHHHHHhccchHHHHHHHH
No 74
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.98 E-value=1.3e+03 Score=29.20 Aligned_cols=273 Identities=14% Similarity=0.134 Sum_probs=0.0
Q ss_pred hhHHhhHHHHHhh--HHHHHHHhhcCHHHHHHHHHHhCCCCCcHHhH--HHHHHHHHHHHHhhhccChhhHHHHHHHHHh
Q 006478 283 ATVANLNSIIHGN--NAYVVSLLKDDSTFIQELFARLRSPTTLEESK--KNLVHFLHEFCGLSKSLQMVQQLRLFRDLMN 358 (643)
Q Consensus 283 ~t~s~LnS~I~fN--~~eIV~~Lq~d~~fL~eLf~~l~~~~~~~~~r--~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~ 358 (643)
.....+++++-.+ +.+.+.... ..|+.++..+...-...+.. .++..-|-|+.. ..-.+.+
T Consensus 178 ~a~rA~~a~~~~~~~~~~~~~~~~---~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e------------~~pk~l~ 242 (1075)
T KOG2171|consen 178 AAVRALGAFAEYLENNKSEVDKFR---DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE------------SEPKLLR 242 (1075)
T ss_pred HHHHHHHHHHHHhccchHHHHHHH---HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh------------hchHHHH
Q ss_pred cCcHHHHHHHHc-----CCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCCh------------
Q 006478 359 EGIFDIVTDALQ-----SQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGE------------ 421 (643)
Q Consensus 359 ~gll~vi~~~L~-----~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~------------ 421 (643)
.-+-.+|++.|+ +=+..+|..|.++++++++.-|.+.|. ...-+.+|+-.+...|-...+.
T Consensus 243 ~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~--~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded 320 (1075)
T KOG2171|consen 243 PHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKK--LALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDED 320 (1075)
T ss_pred HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhh--chhhhccHHHHHHHhcCCcccchhhccccccccc
Q ss_pred ------hHHHHHHHHHHHhcCCCCCCch---hhhHHHH---HHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHH
Q 006478 422 ------DMHCQFLEILRSLLDSYTLSGA---QRDTIIE---IFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPE 489 (643)
Q Consensus 422 ------gl~~Q~~e~lk~LLDp~~~~~~---e~d~fl~---~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (643)
-+..|..+-+-.=|.|+.+-.+ .-..++. ++|.+-+=.-++-+-++|+. .....
T Consensus 321 ~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~--------------~m~~~ 386 (1075)
T KOG2171|consen 321 DEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSD--------------VMIGN 386 (1075)
T ss_pred cccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHH--------------HHHHH
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCC--hHHHHH
Q 006478 490 ILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNL--LKPIVD 567 (643)
Q Consensus 490 ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~l--f~Pv~~ 567 (643)
+ .+++.-|+..++..|.-++.||+..+-.+=.-==....++--+-=+ +-++++
T Consensus 387 l-------------------------~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld 441 (1075)
T KOG2171|consen 387 L-------------------------PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLD 441 (1075)
T ss_pred H-------------------------HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhc
Q ss_pred HHhHhCCCCcchHHHHHHHHHHHHhcChHHHHHHHHH-HhHhcccc
Q 006478 568 AFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVD-SFWNQLVN 612 (643)
Q Consensus 568 ~~~~n~~r~NLlnSa~Lelfe~Ir~enik~Li~hlve-~y~~~l~~ 612 (643)
-. .|..-.+=.-||.+.|+|..-++=+.+....|++ ++..-+++
T Consensus 442 ~~-~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~ 486 (1075)
T KOG2171|consen 442 ST-QNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS 486 (1075)
T ss_pred cc-CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC
No 75
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=27.82 E-value=4.9e+02 Score=24.07 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=61.1
Q ss_pred HHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHH
Q 006478 333 FLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLV 412 (643)
Q Consensus 333 fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li 412 (643)
.+-|+|.+..+-....|.. ..+|+.-|++.++.+...|..+|=+|+.+-...++..+.. ..+++.|+
T Consensus 20 ~il~icd~I~~~~~~~k~a----------~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s---~~fl~~l~ 86 (133)
T cd03561 20 LNLELCDLINLKPNGPKEA----------ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVAD---KEFLLELV 86 (133)
T ss_pred HHHHHHHHHhCCCCCHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhh---HHHHHHHH
Confidence 3456777665544444443 4677777889999999999999999999988877766554 23455566
Q ss_pred HHHhc--CCChhHHHHHHHHHHHhc
Q 006478 413 KGMIT--DFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 413 ~~ll~--d~~~gl~~Q~~e~lk~LL 435 (643)
+.+-. ..++.++.-+.+.+..+=
T Consensus 87 ~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 87 KIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 66654 356667766666666553
No 76
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=27.75 E-value=1.1e+02 Score=37.61 Aligned_cols=72 Identities=21% Similarity=0.258 Sum_probs=46.6
Q ss_pred HHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhc-----CCcchHHHHHHHH-------hcCCChhHHHHHHHHHHHh
Q 006478 367 DALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQ-----EGIPLLGLLVKGM-------ITDFGEDMHCQFLEILRSL 434 (643)
Q Consensus 367 ~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q-----~~~~Ll~~Li~~l-------l~d~~~gl~~Q~~e~lk~L 434 (643)
.+++++|..+|..|.-.+.+.+.+-|++||.-.-.- +....=..||+.. ..|.+..++--++|.+-+|
T Consensus 1014 ~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytL 1093 (1233)
T KOG1824|consen 1014 KLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTL 1093 (1233)
T ss_pred HHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999853220 0111111112111 1233334466788999999
Q ss_pred cCCC
Q 006478 435 LDSY 438 (643)
Q Consensus 435 LDp~ 438 (643)
||+.
T Consensus 1094 Ldsc 1097 (1233)
T KOG1824|consen 1094 LDSC 1097 (1233)
T ss_pred HHhh
Confidence 9864
No 77
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.66 E-value=3e+02 Score=33.50 Aligned_cols=127 Identities=19% Similarity=0.282 Sum_probs=0.0
Q ss_pred hhHHHHHHHhh-------cCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHH
Q 006478 294 GNNAYVVSLLK-------DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVT 366 (643)
Q Consensus 294 fN~~eIV~~Lq-------~d~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~ 366 (643)
|-|+.|+..|. +-.+-+.++.++.-.... ..|.-+-..|=||+..--.+.+.+...-. -.++|.
T Consensus 249 FLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntd--sskN~GnAILYE~V~TI~~I~~~~~Lrvl-------ainiLg 319 (866)
T KOG1062|consen 249 FLQIRILRLLRILGQNDADASDLMNDILAQVATNTD--SSKNAGNAILYECVRTIMDIRSNSGLRVL-------AINILG 319 (866)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccc--ccccchhHHHHHHHHHHHhccCCchHHHH-------HHHHHH
Q ss_pred HHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCC
Q 006478 367 DALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT 439 (643)
Q Consensus 367 ~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~ 439 (643)
..|.+.|.++|=.|.+.|...|.+||+.|.+| ..+.+.. +.|+|..+|.-.+|.+-.|.+..|
T Consensus 320 kFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleC-----L~DpD~SIkrralELs~~lvn~~N 382 (866)
T KOG1062|consen 320 KFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILEC-----LKDPDVSIKRRALELSYALVNESN 382 (866)
T ss_pred HHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHH-----hcCCcHHHHHHHHHHHHHHhcccc
No 78
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=27.33 E-value=9.6e+02 Score=27.25 Aligned_cols=223 Identities=12% Similarity=0.144 Sum_probs=122.0
Q ss_pred HHhHHHHHHHHHHHHHhhhccChhhHHHHHHHH--HhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHh
Q 006478 324 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDL--MNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVR 401 (643)
Q Consensus 324 ~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L--~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~ 401 (643)
++-.+-++.++-+++.- .++|..+|..- -+...+...-..|..+|.-+...++-++..++.+.|...-..
T Consensus 68 ~d~vqyvL~Li~dll~~-----~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~--- 139 (429)
T cd00256 68 DDTVRYVLTLIDDMLQE-----DDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGS--- 139 (429)
T ss_pred HHHHHHHHHHHHHHHHh-----chHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchh---
Confidence 34444555556665554 24455555432 122333333336678888899999999999998877421110
Q ss_pred cCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHh-hHHHHHHHHHhcCCCcccccccCCC
Q 006478 402 QEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEK-HLGQLIDVITASCPQEGIAQSASSG 480 (643)
Q Consensus 402 q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~-~~~~L~~pl~~~~~~~~~~~~~~~~ 480 (643)
....+++.|++++-...+.+.+...+..|..||-.+. |=..|.+. +++.|+.-|-..
T Consensus 140 -~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~--------~R~~f~~~~~v~~L~~~L~~~------------- 197 (429)
T cd00256 140 -DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE--------YRFAFVLADGVPTLVKLLSNA------------- 197 (429)
T ss_pred -HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch--------HHHHHHHccCHHHHHHHHhhc-------------
Confidence 1112455667666554455666556677777774332 33345433 455554433211
Q ss_pred CcccCCcHHHHHH---HHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhh--cccchhhHHHHHHHHHHhcCC-----hh
Q 006478 481 GRVESTKPEILSN---ICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTR--RREKYLVVAAVRFVRTILSRH-----DE 550 (643)
Q Consensus 481 ~~~~~~~~~ll~~---l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~--~~~k~L~LaAlRf~R~ii~l~-----D~ 550 (643)
....+++.+ .+=+|||.-. .-...-..+++..++.+++ .|+|..|++ +-.+|+++... -.
T Consensus 198 ----~~~~Ql~Y~~ll~lWlLSF~~~-----~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~-l~~l~Nll~~~~~~~~~~ 267 (429)
T cd00256 198 ----TLGFQLQYQSIFCIWLLTFNPH-----AAEVLKRLSLIQDLSDILKESTKEKVIRIV-LAIFRNLISKRVDREVKK 267 (429)
T ss_pred ----cccHHHHHHHHHHHHHHhccHH-----HHHhhccccHHHHHHHHHHhhhhHHHHHHH-HHHHHHHhhcccccchhh
Confidence 012243322 2234444433 2123334578888887765 689999985 77899999864 33
Q ss_pred HHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHHHHHHH
Q 006478 551 HLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 591 (643)
Q Consensus 551 fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~Ir 591 (643)
.+.--|+..++.. ++..+.... .-..-+.|-+++++
T Consensus 268 ~~~~~mv~~~l~~-~l~~L~~rk----~~DedL~edl~~L~ 303 (429)
T cd00256 268 TAALQMVQCKVLK-TLQSLEQRK----YDDEDLTDDLKFLT 303 (429)
T ss_pred hHHHHHHHcChHH-HHHHHhcCC----CCcHHHHHHHHHHH
Confidence 4566777777744 555554332 33444555555554
No 79
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=26.82 E-value=5.5e+02 Score=30.81 Aligned_cols=71 Identities=24% Similarity=0.276 Sum_probs=51.8
Q ss_pred cCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 006478 359 EGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 359 ~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LL 435 (643)
+.+|..|+..+.. +..|..+.-+|..+|...|.-+... .+.+|+..|.+.|..|.+..+-.-..-+|-+||
T Consensus 69 K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i----~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 69 KHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKI----LQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred HHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHH----hcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 3566677776664 3567777888888999988865442 367899999999999999977555555555665
No 80
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=26.41 E-value=4.7e+02 Score=24.41 Aligned_cols=76 Identities=18% Similarity=0.295 Sum_probs=49.2
Q ss_pred hHHhhHHHHHhhHHHHHHHhhcCHHHHHHHHHHhCCCCCcHH--hHHHHHHHHHHHHHhhhccChhhH-HHHHHHHHhcC
Q 006478 284 TVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEE--SKKNLVHFLHEFCGLSKSLQMVQQ-LRLFRDLMNEG 360 (643)
Q Consensus 284 t~s~LnS~I~fN~~eIV~~Lq~d~~fL~eLf~~l~~~~~~~~--~r~d~v~fL~e~c~~ak~lq~~~r-~~~f~~L~~~g 360 (643)
++.+|.+++-.-...+-..+. +..|+.+|...+.++..... -|..++.+|++.-.-.++...... .++|+.|-+.|
T Consensus 62 aL~lld~lvkNcg~~f~~ev~-~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~~Lk~~G 140 (140)
T PF00790_consen 62 ALTLLDALVKNCGPRFHREVA-SKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQDTYKRLKRKG 140 (140)
T ss_dssp HHHHHHHHHHHSHHHHHHHHT-SHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHh-HHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHCc
Confidence 345566655544444544554 46799999998887766554 677888888876555544433222 46788887776
No 81
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=26.21 E-value=5e+02 Score=24.15 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=0.0
Q ss_pred hHHhhHHHHHhhHHHHHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhcc-ChhhHHHHHHHHHhcC
Q 006478 284 TVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSL-QMVQQLRLFRDLMNEG 360 (643)
Q Consensus 284 t~s~LnS~I~fN~~eIV~~Lq~d~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~l-q~~~r~~~f~~L~~~g 360 (643)
++.+|.+++-.--...-..+.+ ..|+.+|...+.++...+.-|..++.++++--..-++- +.+.-.+.|..|...|
T Consensus 57 AL~lLe~~vkNcg~~f~~ev~s-~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y~~L~~~g 133 (133)
T smart00288 57 ALTLLDACVKNCGSKFHLEVAS-KEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPDLSQIVDVYDLLKKKG 133 (133)
T ss_pred HHHHHHHHHHHCCHHHHHHHHh-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCc
No 82
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.03 E-value=9.7e+02 Score=26.91 Aligned_cols=182 Identities=19% Similarity=0.235 Sum_probs=113.7
Q ss_pred HHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHH
Q 006478 354 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS 433 (643)
Q Consensus 354 ~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~ 433 (643)
+.||..|=++++-.++...|..++--+|--+..|. .|.. -|. +..|.+..+...|++.| .+.++-+|.|..-||+.
T Consensus 202 r~LV~aG~lpvLVsll~s~d~dvqyycttaisnIa-Vd~~-~Rk-~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 202 RVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIA-VDRR-ARK-ILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhccCCchhhhhhhccCChhHHHHHHHHhhhhh-hhHH-HHH-HHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence 46888999999999999999888766554443322 2221 233 34456677888888866 56788899999999998
Q ss_pred hcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhh--
Q 006478 434 LLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKC-- 511 (643)
Q Consensus 434 LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~-- 511 (643)
|---+.. ....-=...+|-|++-|.+.. -+-++. =-||+++-+.+--+
T Consensus 278 lasdt~Y-------q~eiv~ag~lP~lv~Llqs~~------------------~plila-----sVaCIrnisihplNe~ 327 (550)
T KOG4224|consen 278 LASDTEY-------QREIVEAGSLPLLVELLQSPM------------------GPLILA-----SVACIRNISIHPLNEV 327 (550)
T ss_pred hcccchh-------hhHHHhcCCchHHHHHHhCcc------------------hhHHHH-----HHHHHhhcccccCccc
Confidence 8432221 111112234555555543210 011111 13777766555433
Q ss_pred HHhhccHHHHHHHHhhcccch-hhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHHh
Q 006478 512 NFLLNNVVDKVLLLTRRREKY-LVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 570 (643)
Q Consensus 512 ~il~~~l~~kv~~Ll~~~~k~-L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~~ 570 (643)
-|.....++-.++|+.+++.- .+++|+--+|..-+.-. --.+-|+..|-..-..+++.
T Consensus 328 lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse-~n~~~i~esgAi~kl~eL~l 386 (550)
T KOG4224|consen 328 LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSE-HNVSVIRESGAIPKLIELLL 386 (550)
T ss_pred ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhh-hhhHHHhhcCchHHHHHHHh
Confidence 344455677788999998875 89999999999766433 23456667777766666654
No 83
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=25.97 E-value=1.6e+02 Score=24.27 Aligned_cols=49 Identities=10% Similarity=0.033 Sum_probs=33.4
Q ss_pred cCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 006478 370 QSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 434 (643)
Q Consensus 370 ~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~L 434 (643)
+++++.+|..++..|..+ .+...+..|++.+ .+.++.++.+...+|..+
T Consensus 10 ~~~~~~vr~~a~~~L~~~---------------~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGEL---------------GDPEAIPALIELL-KDEDPMVRRAAARALGRI 58 (88)
T ss_dssp TSSSHHHHHHHHHHHHCC---------------THHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHc---------------CCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh
Confidence 677777777766665511 1123455666655 889999999998888766
No 84
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=25.95 E-value=5e+02 Score=25.88 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=55.0
Q ss_pred HHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhc-CCc--------------chHHHHHHHHhcCCChhHHHHH
Q 006478 363 DIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQ-EGI--------------PLLGLLVKGMITDFGEDMHCQF 427 (643)
Q Consensus 363 ~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q-~~~--------------~Ll~~Li~~ll~d~~~gl~~Q~ 427 (643)
..+.-++.|++.++|.+|...+..+++..-.-+...--.+ ... .+-..|+..+..|.++.+..|+
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~ 122 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQL 122 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 4556778899999999999999999998633332211111 111 1223466667788999999999
Q ss_pred HHHHHHhcCCCCC
Q 006478 428 LEILRSLLDSYTL 440 (643)
Q Consensus 428 ~e~lk~LLDp~~~ 440 (643)
..++..|......
T Consensus 123 lK~la~Lv~~tPY 135 (182)
T PF13251_consen 123 LKCLAVLVQATPY 135 (182)
T ss_pred HHHHHHHHccCCh
Confidence 9999999986654
No 85
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=25.58 E-value=2.6e+02 Score=33.79 Aligned_cols=89 Identities=19% Similarity=0.328 Sum_probs=65.1
Q ss_pred hhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHHHHH
Q 006478 510 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEY 589 (643)
Q Consensus 510 k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~ 589 (643)
|.-+...+++.++.+++.+++.-++-.|+|.+-+.= -|.-.-..|++.|++.+++.++... |.- ..|+-++..
T Consensus 324 K~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLS--fd~~~R~~mV~~GlIPkLv~LL~d~----~~~-~val~iLy~ 396 (708)
T PF05804_consen 324 KDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLS--FDPELRSQMVSLGLIPKLVELLKDP----NFR-EVALKILYN 396 (708)
T ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhC--cCHHHHHHHHHCCCcHHHHHHhCCC----chH-HHHHHHHHH
Confidence 556778899999999999999999999999998853 3444588999999999999988532 222 346677766
Q ss_pred HH-----------hcChHHHHHHHHHH
Q 006478 590 IR-----------KENLKSLVKYIVDS 605 (643)
Q Consensus 590 Ir-----------~enik~Li~hlve~ 605 (643)
+. ++-+..|++.+.++
T Consensus 397 LS~dd~~r~~f~~TdcIp~L~~~Ll~~ 423 (708)
T PF05804_consen 397 LSMDDEARSMFAYTDCIPQLMQMLLEN 423 (708)
T ss_pred hccCHhhHHHHhhcchHHHHHHHHHhC
Confidence 63 23455555555543
No 86
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=25.57 E-value=4.1e+02 Score=25.31 Aligned_cols=110 Identities=5% Similarity=0.125 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHH
Q 006478 489 EILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDA 568 (643)
Q Consensus 489 ~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~ 568 (643)
++...|||++.- -.- .-++.++-+.+-+..++-+.++-||..+-+|+.---.-|+..+.+.....-+..+
T Consensus 19 ~~il~icD~I~~----~~~------~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl 88 (144)
T cd03568 19 GLILDVCDKVKS----DEN------GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKL 88 (144)
T ss_pred HHHHHHHHHHhc----CCc------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHH
Confidence 355667887531 111 1223444455556678889999999999999988888899999998888887777
Q ss_pred HhHhCCCCcchHHHHHHHHHHHHhcChHHHHHHHHHHhHhcccccc---c-hhhHHHHHHhh
Q 006478 569 FVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFE---Y-LASLHSFKVKY 626 (643)
Q Consensus 569 ~~~n~~r~NLlnSa~Lelfe~Ir~enik~Li~hlve~y~~~l~~i~---y-v~tf~~l~~ry 626 (643)
+.... ...++.-+..+++...+.|.+-. | .++.+.|+.++
T Consensus 89 ~~~~~------------------~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~~G 132 (144)
T cd03568 89 INDRV------------------HPTVKEKLREVVKQWADEFKNDPSLSLMSDLYKKLKNEG 132 (144)
T ss_pred hcccC------------------CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHcC
Confidence 64431 23667777777777777776422 2 34555555443
No 87
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=25.54 E-value=1.5e+02 Score=20.65 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=27.6
Q ss_pred HHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHH
Q 006478 354 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (643)
Q Consensus 354 ~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~i 387 (643)
..+++.|.++.+-..+++++..++..++..|..+
T Consensus 6 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 6 QAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3567889999998889988888888888877655
No 88
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.35 E-value=6.5e+02 Score=27.72 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=64.3
Q ss_pred HHhhHHHHHhhHHHHHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHH
Q 006478 285 VANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDI 364 (643)
Q Consensus 285 ~s~LnS~I~fN~~eIV~~Lq~d~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~v 364 (643)
..++.+ +..||..+.+.+-+. .||+.|+..+... .+...|..+ |.-+|++-+|-++-.. .|+ --.| +.+
T Consensus 145 a~Vigt-~~qNNP~~Qe~v~E~-~~L~~Ll~~ls~~-~~~~~r~ka---L~AissLIRn~~~g~~-~fl---~~~G-~~~ 213 (342)
T KOG2160|consen 145 ARVIGT-AVQNNPKSQEQVIEL-GALSKLLKILSSD-DPNTVRTKA---LFAISSLIRNNKPGQD-EFL---KLNG-YQV 213 (342)
T ss_pred HHHHHH-HHhcCHHHHHHHHHc-ccHHHHHHHHccC-CCchHHHHH---HHHHHHHHhcCcHHHH-HHH---hcCC-HHH
Confidence 345555 445666666665543 3999999999843 333444333 3567777777765432 232 2356 899
Q ss_pred HHHHHcC--CChhhHHhhHHHHHHHHhcChH
Q 006478 365 VTDALQS--QDKKLVLTGTDILILFLNQDPN 393 (643)
Q Consensus 365 i~~~L~~--~d~~ir~~~tdIl~~iie~dp~ 393 (643)
+..+|++ .+...+..++..+..++.-+++
T Consensus 214 L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 214 LRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 9999998 5566677788888888877766
No 89
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.15 E-value=6.9e+02 Score=30.29 Aligned_cols=250 Identities=18% Similarity=0.216 Sum_probs=135.0
Q ss_pred HHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCC-C
Q 006478 362 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT-L 440 (643)
Q Consensus 362 l~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~-~ 440 (643)
+.-+..+++++++-+|..++.....+-..+|.+++ +..++..|-+ |+.|.+|++-+....+|..+.+.++ +
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~-------~~gl~~~L~~-ll~D~~p~VVAnAlaaL~eI~e~~~~~ 194 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE-------DSGLVDALKD-LLSDSNPMVVANALAALSEIHESHPSV 194 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc-------ccchhHHHHH-HhcCCCchHHHHHHHHHHHHHHhCCCC
Confidence 44455556788888888888888777777777665 3556666655 4458899987777777777776554 2
Q ss_pred Cch-hhhHHHHHHH---HhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchh-----hh
Q 006478 441 SGA-QRDTIIEIFY---EKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI-----KC 511 (643)
Q Consensus 441 ~~~-e~d~fl~~FY---~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~-----k~ 511 (643)
... .-..+++.+- ..|-.|---++++...... . + +..=...+|+.++=-.+|-.-+. |-
T Consensus 195 ~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~-p----~-------d~~ea~~i~~r~~p~Lqh~n~avvlsavKv 262 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNECTEWGQIFILDCLAEYV-P----K-------DSREAEDICERLTPRLQHANSAVVLSAVKV 262 (734)
T ss_pred CcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC-C----C-------CchhHHHHHHHhhhhhccCCcceEeehHHH
Confidence 211 1112222222 1233333333332100000 0 0 00011234554443333322211 11
Q ss_pred HH--------hhccHHHHHH-HH--hhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCCh---HHH------HHHHhH
Q 006478 512 NF--------LLNNVVDKVL-LL--TRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLL---KPI------VDAFVA 571 (643)
Q Consensus 512 ~i--------l~~~l~~kv~-~L--l~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf---~Pv------~~~~~~ 571 (643)
+. ..+.+..|+. .| +.++..-+...|+|=++-++...++ +.+.=++.=.+ +|| ++++.+
T Consensus 263 ~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~-~~~~~~~~Ff~kynDPiYvK~eKleil~~ 341 (734)
T KOG1061|consen 263 ILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPE-ILKVEIKVFFCKYNDPIYVKLEKLEILIE 341 (734)
T ss_pred HHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChH-HHHhHhHeeeeecCCchhhHHHHHHHHHH
Confidence 11 2234455554 22 3567787788999999999999998 77777776433 565 355555
Q ss_pred hCCCCcchHHHHHHHHHHHHh-------cChHHHH---------HHHHHHhHhccc-cccch-----hhHHHHHHhhhhc
Q 006478 572 NGNRYNLLNSAVLELFEYIRK-------ENLKSLV---------KYIVDSFWNQLV-NFEYL-----ASLHSFKVKYEQV 629 (643)
Q Consensus 572 n~~r~NLlnSa~Lelfe~Ir~-------enik~Li---------~hlve~y~~~l~-~i~yv-----~tf~~l~~ryeq~ 629 (643)
-.+..|+-. ..-|+-+|--- +-|+.+- +.++..+=+.++ +++|| .+|+++-.||.|.
T Consensus 342 la~~~nl~q-vl~El~eYatevD~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 342 LANDANLAQ-VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred HhhHhHHHH-HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 555666666 66677666422 1111110 334445555554 45554 4677777777766
Q ss_pred cCCC
Q 006478 630 FLLP 633 (643)
Q Consensus 630 ~~~~ 633 (643)
-+..
T Consensus 421 ~~~v 424 (734)
T KOG1061|consen 421 YESV 424 (734)
T ss_pred hhhh
Confidence 4443
No 90
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=25.01 E-value=1.4e+02 Score=21.46 Aligned_cols=36 Identities=8% Similarity=0.046 Sum_probs=31.2
Q ss_pred hhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHh
Q 006478 510 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (643)
Q Consensus 510 k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii 545 (643)
+.-++..+.+...+.|+++.+.-++-.|+..++++-
T Consensus 5 ~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 5 KQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 556788899999999999999999999999888763
No 91
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=24.98 E-value=3.4e+02 Score=21.89 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=39.9
Q ss_pred HHHhhcC-HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhh-h--------ccChhhHHHH
Q 006478 300 VSLLKDD-STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-K--------SLQMVQQLRL 352 (643)
Q Consensus 300 V~~Lq~d-~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~a-k--------~lq~~~r~~~ 352 (643)
+..++.. +.|+..|...+.+++.+..-|.-+...|+.++.-. . .+.+..|..+
T Consensus 5 L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~I 67 (77)
T PF03810_consen 5 LKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQI 67 (77)
T ss_dssp HHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHH
Confidence 4445556 79999999999788888888888888999987665 4 5666666543
No 92
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=24.74 E-value=1.7e+02 Score=34.01 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhhhccC-hhhHHHHHHHHHhcCcHHHH---HHHHcCC---ChhhHHhhHHHHHHHHhcChHHHHHHH
Q 006478 327 KKNLVHFLHEFCGLSKSLQ-MVQQLRLFRDLMNEGIFDIV---TDALQSQ---DKKLVLTGTDILILFLNQDPNLLRSYV 399 (643)
Q Consensus 327 r~d~v~fL~e~c~~ak~lq-~~~r~~~f~~L~~~gll~vi---~~~L~~~---d~~ir~~~tdIl~~iie~dp~lvR~~i 399 (643)
..+.+..|.+.|.-+..-+ ...+..+.++|-+.|.-.++ ...+... ...+|.+|..-|-.+.++.|..+|+.+
T Consensus 484 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l 563 (618)
T PF01347_consen 484 IEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREIL 563 (618)
T ss_dssp -GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 4456777777777555443 35667788999999954444 4444444 456888998888888999999999876
Q ss_pred Hh
Q 006478 400 VR 401 (643)
Q Consensus 400 ~~ 401 (643)
..
T Consensus 564 ~~ 565 (618)
T PF01347_consen 564 LP 565 (618)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 93
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=23.29 E-value=4.2e+02 Score=28.13 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHHHHHHhhcCchhhhHHhhcc-----HHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCC
Q 006478 487 KPEILSNICELLCFCVLHHPYRIKCNFLLNN-----VVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNL 561 (643)
Q Consensus 487 ~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~-----l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~l 561 (643)
+++...+++-++.=++..++.+.+.|.-... ...-.++++...+.+.++.|.+++-.+++-.+..-...- .+.
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~--~~~ 147 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV--KEA 147 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH--HHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH--HHH
Confidence 4556667777777778899988876655322 446666788888999999999999999888776544432 456
Q ss_pred hHHHHHHHhHhCC--CCcchHHHHHHHHHHHHh
Q 006478 562 LKPIVDAFVANGN--RYNLLNSAVLELFEYIRK 592 (643)
Q Consensus 562 f~Pv~~~~~~n~~--r~NLlnSa~Lelfe~Ir~ 592 (643)
+.++++.+..... ..|+...|+.-|-+..+.
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 6777777765322 234444455444444443
No 94
>PRK10167 hypothetical protein; Provisional
Probab=23.10 E-value=3.5e+02 Score=26.69 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=38.0
Q ss_pred HHHhhcccchhhHH----HHHHHHHHhcC------ChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHHHHHHHh
Q 006478 523 LLLTRRREKYLVVA----AVRFVRTILSR------HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 592 (643)
Q Consensus 523 ~~Ll~~~~k~L~La----AlRf~R~ii~l------~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~Ir~ 592 (643)
+.-..+++|++.+| +-|-++.+|+- -|+++..|.- -+++++..-.+|.+.+| ++.-++-|.++
T Consensus 33 Lv~Fhsr~KyllMaHsq~~yr~LG~lva~~~~~~~~~~~~~~Y~~------~lm~al~~~~t~~~~~N-vL~Hi~GYFKk 105 (169)
T PRK10167 33 LLDYHSRYKLVFLAHSQPEYRKLGPFVADIHQWQSLDDFYNQYRQ------RVIVLLSHPANVRDHTN-VLMHVQGYFRP 105 (169)
T ss_pred HHHHHHhhhHHHHhCCHHHHHHHHHHHhcCCcCCCHHHHHHHHHH------HHHHHHcCCCCcchhHH-HHHHHHHHHHh
Confidence 33355778887776 77888888873 3455666653 35566665556655555 44555555543
No 95
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=22.90 E-value=1e+03 Score=26.14 Aligned_cols=168 Identities=14% Similarity=0.262 Sum_probs=92.0
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHH
Q 006478 420 GEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLC 499 (643)
Q Consensus 420 ~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~ 499 (643)
+.-|-.|....|-.++-.......=.++|..+||++++..|..|= ..-. +|-..-
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~---------------------~~K~----i~~~~l 113 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPN---------------------SPKS----ICTHYL 113 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCC---------------------CCHH----HHHHHH
Confidence 344445555555566533222111234678899999998764430 0111 233334
Q ss_pred HHHhhcCchhhhHHhhccHHHHHHHHhh-----cccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHHhHhCC
Q 006478 500 FCVLHHPYRIKCNFLLNNVVDKVLLLTR-----RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGN 574 (643)
Q Consensus 500 fcv~~H~~r~k~~il~~~l~~kv~~Ll~-----~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~n~~ 574 (643)
.|+..-.+.- .++.++.+.+++..+. -+.+-+..-++..+|+.+.-.=+.+..+ -+.-|.+++..+.....
T Consensus 114 ~~ls~Q~f~~--~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~--~~~W~~~l~~~l~~~~k 189 (372)
T PF12231_consen 114 WCLSDQKFSP--KIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKH--ADIWFPILFPDLLSSAK 189 (372)
T ss_pred HHHHcCCCCC--cccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcch
Confidence 5555555554 4778888888776432 3456778888999999875543333333 22467788887776655
Q ss_pred CCcchHHHHHHHHHHHHh--cChHHHHHHHHHHhHhccccccchhhH
Q 006478 575 RYNLLNSAVLELFEYIRK--ENLKSLVKYIVDSFWNQLVNFEYLASL 619 (643)
Q Consensus 575 r~NLlnSa~Lelfe~Ir~--enik~Li~hlve~y~~~l~~i~yv~tf 619 (643)
. +.++++.+.+-+.+ ..-+.+.+.+.+-+...+.+-.|++-+
T Consensus 190 ~---ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~ 233 (372)
T PF12231_consen 190 D---IRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLY 233 (372)
T ss_pred H---HHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHH
Confidence 3 44444444443332 223455666666555445332444433
No 96
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=22.67 E-value=9.8e+02 Score=25.73 Aligned_cols=105 Identities=20% Similarity=0.327 Sum_probs=57.2
Q ss_pred CcHHhHHHHHHHHHHHHHhh-h-ccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhc----ChHHH
Q 006478 322 TLEESKKNLVHFLHEFCGLS-K-SLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ----DPNLL 395 (643)
Q Consensus 322 ~~~~~r~d~v~fL~e~c~~a-k-~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~----dp~lv 395 (643)
.-++-|...-.+|+.++..+ . -++.+ .+.|+ -+++.+.|++++++..+...|.+++..+++. +|...
T Consensus 132 ~yPe~r~~ff~LL~~i~~~~f~~l~~lp--~~~f~-----~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~ 204 (319)
T PF08767_consen 132 EYPEHRVNFFKLLRAINEHCFPALLQLP--PEQFK-----LVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFA 204 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTHHHHHS---HHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHH
T ss_pred hChHHHHHHHHHHHHHHHHhHHHHHcCC--HHHHH-----HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 34678888888888887654 1 11111 11122 2467889999999999998888777655543 44433
Q ss_pred HHHHHhcCCcchHHHHHHHHhc-CCChhHHHHHHHHHHHhc
Q 006478 396 RSYVVRQEGIPLLGLLVKGMIT-DFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 396 R~~i~~q~~~~Ll~~Li~~ll~-d~~~gl~~Q~~e~lk~LL 435 (643)
.++ .++--..++.-+...+.. +...|.+.|. .+|..|+
T Consensus 205 ~~F-~~~y~~~il~~if~vltD~~Hk~gf~~q~-~iL~~Lf 243 (319)
T PF08767_consen 205 NQF-YQQYYLDILQDIFSVLTDSDHKSGFKLQS-QILSNLF 243 (319)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHSTT-GGGHHHHH-HHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHCcccHHHHHHHH-HHHHHHH
Confidence 333 221111233222232221 3445666554 5555554
No 97
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=22.66 E-value=2.7e+02 Score=27.30 Aligned_cols=93 Identities=17% Similarity=0.231 Sum_probs=52.2
Q ss_pred HhhhcccCCCCCccc-chH-HhhhhcCCceeeeecC---ChHHHHHHHhhheeceeeehhcccccchhhHHhhHHHHHhh
Q 006478 221 IIGSLEYDPDVPHVQ-HHR-NFLKEHVVFKEAIPIR---DPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGN 295 (643)
Q Consensus 221 vvG~LEYDp~~p~~~-~HR-~fL~~~~~FkeVVpi~---d~~i~~kIHqtyRlqYLKDVVL~r~lDD~t~s~LnS~I~fN 295 (643)
.-|||+.||.+-..- .-| .++ ..+|+ +|-. =+.+..-+...+-..|..|. .++.+|++++.-..+.....
T Consensus 3 a~GCL~CDp~v~eal~~L~~~~l--P~~~~--~~~~~~~~~rl~~~m~~~~~~~~~~~a-~~g~vd~~~L~~va~~~~~~ 77 (160)
T PF15005_consen 3 ARGCLQCDPSVVEALKSLRHDYL--PSHLH--VEGLQARAQRLLLEMEDFFFLPYAEDA-FMGVVDEDTLDKVAWSFKNQ 77 (160)
T ss_pred CCeeeeCCHHHHHHHHHHHHHhC--ccccC--cchHHHHHHHHHHHhhCccccccchhh-hhhhccHHHHHHHHHHHHHH
Confidence 459999999987531 111 111 12222 1111 02333444556667787775 57889999998888755443
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhC
Q 006478 296 NAYVVSLLKDDSTFIQELFARLR 318 (643)
Q Consensus 296 ~~eIV~~Lq~d~~fL~eLf~~l~ 318 (643)
--.|-+.=-.++-|++|||....
T Consensus 78 lkrl~~s~~kg~~ll~EL~~~r~ 100 (160)
T PF15005_consen 78 LKRLTDSDLKGEPLLKELVWMRQ 100 (160)
T ss_pred HHHHhcCCcccchHHHHHHHHHH
Confidence 33343322224557777777654
No 98
>PF14278 TetR_C_8: Transcriptional regulator C-terminal region
Probab=22.47 E-value=2.2e+02 Score=22.63 Aligned_cols=66 Identities=11% Similarity=0.203 Sum_probs=32.9
Q ss_pred HHHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHH----HhhhccChhhHHHHHHHHHhcCcHHHHHHH
Q 006478 298 YVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFC----GLSKSLQMVQQLRLFRDLMNEGIFDIVTDA 368 (643)
Q Consensus 298 eIV~~Lq~d~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c----~~ak~lq~~~r~~~f~~L~~~gll~vi~~~ 368 (643)
++.++++++.+|.+-||+.=.++.. +..+...+++.. .....-. ..+...+.+++-.|++.+|..=
T Consensus 6 ~i~~~i~~n~~~~~~ll~~~~~~~f----~~~l~~~~~~~~~~~~~~~~~~~-~~~~~y~~~f~~sg~igvi~~W 75 (77)
T PF14278_consen 6 EIFEYIYENRDFYKILLSPNGDPNF----QERLKELIKEWITEYINENSPDN-DDPEEYLISFIVSGIIGVIQWW 75 (77)
T ss_pred HHHHHHHHhHHHHHHHHCCCCCHHH----HHHHHHHHHHHHHHHHHHhcccc-ccHHHHHHHHHHHHHHHHHHHH
Confidence 4666777776666666653322222 222233333332 1111111 1122267788888888888753
No 99
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=21.71 E-value=1.9e+02 Score=20.83 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=27.7
Q ss_pred HHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHH
Q 006478 354 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (643)
Q Consensus 354 ~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~i 387 (643)
+.+++.|.++.+-..|.+++..++..++--|..+
T Consensus 6 ~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 6 QAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999888777655544
No 100
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=21.38 E-value=2.4e+02 Score=21.48 Aligned_cols=53 Identities=19% Similarity=0.183 Sum_probs=35.5
Q ss_pred hhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHH
Q 006478 375 KLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS 433 (643)
Q Consensus 375 ~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~ 433 (643)
.+|..|+-.|..+.++.|..++.+.-+ ++..|+..| .|.++.++.....+|-.
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~-----~~~~L~~~L-~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPE-----LLPALIPLL-QDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHH-----HHHHHHHHT-TSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHH-----HHHHHHHHH-cCCCHHHHHHHHHHHhc
Confidence 466777777777777777777765422 555666544 77777888877777643
No 101
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=21.09 E-value=7.2e+02 Score=23.64 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=42.7
Q ss_pred HHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCCh--hHHHHHHH
Q 006478 352 LFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGE--DMHCQFLE 429 (643)
Q Consensus 352 ~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~--gl~~Q~~e 429 (643)
-+..+++..+.+.+-..+.+++..+-..+..|+..++.+ .|.++..| -..++..++..++..... --|.-+.|
T Consensus 65 ~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~----~~~~Lk~e-le~~l~~i~~~il~~~~~~~~~k~~~Le 139 (168)
T PF12783_consen 65 SLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR----FRSHLKLE-LEVFLSHIILRILESDNSSLWQKELALE 139 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence 455566666666665555555566666667777666633 34443332 234555555545543332 23444556
Q ss_pred HHHHhc
Q 006478 430 ILRSLL 435 (643)
Q Consensus 430 ~lk~LL 435 (643)
+++.+.
T Consensus 140 ~l~~l~ 145 (168)
T PF12783_consen 140 ILRELC 145 (168)
T ss_pred HHHHHH
Confidence 666665
No 102
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=20.97 E-value=9.8e+02 Score=25.14 Aligned_cols=103 Identities=21% Similarity=0.222 Sum_probs=66.3
Q ss_pred cHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHH-HHhcChHHHHHHHHh
Q 006478 323 LEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL-FLNQDPNLLRSYVVR 401 (643)
Q Consensus 323 ~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~-iie~dp~lvR~~i~~ 401 (643)
+.+-|..++.-|=-||-+.|.+-.+. +.++..++..++..++..|.-++.- ++.|.+..+...-..
T Consensus 40 ~~~vR~~al~cLGl~~Lld~~~a~~~-------------l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~ 106 (298)
T PF12719_consen 40 DPAVRELALKCLGLCCLLDKELAKEH-------------LPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDN 106 (298)
T ss_pred CHHHHHHHHHHHHHHHHhChHHHHHH-------------HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhcc
Confidence 44788899998888888877543221 2223334455688888888777765 456666655543221
Q ss_pred ---cCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCC
Q 006478 402 ---QEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT 439 (643)
Q Consensus 402 ---q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~ 439 (643)
.....++.++.+.+-.+ ++.++..+.|.+-.|+=...
T Consensus 107 ~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 107 DESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred CccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCC
Confidence 11245677777776666 88999999998877764433
No 103
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=20.82 E-value=3.7e+02 Score=25.73 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=26.9
Q ss_pred HHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHH
Q 006478 356 LMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (643)
Q Consensus 356 L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~ii 388 (643)
+-..+.+..|...|.+++..+|..++|||..+.
T Consensus 154 ~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 154 LSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999998764
No 104
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=20.76 E-value=5.7e+02 Score=22.71 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCChhhHHhhHHHHHHHHhcChHH-HHHHHH
Q 006478 362 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNL-LRSYVV 400 (643)
Q Consensus 362 l~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~l-vR~~i~ 400 (643)
+--+.-|+.+=.+.||..++.+|-.++++.|+. ++++-.
T Consensus 13 ~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~ 52 (102)
T PF12333_consen 13 MLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWV 52 (102)
T ss_pred HHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHH
Confidence 345677888999999999999999999999998 666543
No 105
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=20.71 E-value=3.8e+02 Score=25.67 Aligned_cols=91 Identities=8% Similarity=0.070 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhc---------ccchhhHHHHHHHHHHhcCChhHHHHHHHh-hCChH
Q 006478 494 ICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRR---------REKYLVVAAVRFVRTILSRHDEHLINHFVK-NNLLK 563 (643)
Q Consensus 494 l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~---------~~k~L~LaAlRf~R~ii~l~D~fy~ryiik-~~lf~ 563 (643)
+-+|=...-.+..-+++.|+-. +.+..++.++.. .+..+...++||+|+++..... ..++++ .+.+.
T Consensus 85 L~~L~v~Lrt~~~~Wv~~Fl~~-~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G--~~~v~~~~~~v~ 161 (187)
T PF06371_consen 85 LKSLRVSLRTNPISWVQEFLEL-GGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYG--LEAVLSHPDSVN 161 (187)
T ss_dssp HHHHHHHHHHS-HHHHHHH-HH-HHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHH--HHHHHCSSSHHH
T ss_pred HHHHHHHhccCCchHHHHhccC-CCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHH--HHHHHcCcHHHH
Confidence 3333333344444567777754 444333333221 2235678899999999866654 455554 66666
Q ss_pred HHHHHHhHhCCCCcchHHHHHHHHHHH
Q 006478 564 PIVDAFVANGNRYNLLNSAVLELFEYI 590 (643)
Q Consensus 564 Pv~~~~~~n~~r~NLlnSa~Lelfe~I 590 (643)
.|...+.. ++--+--.++|++-++
T Consensus 162 ~i~~~L~s---~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 162 LIALSLDS---PNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHT--T---TSHHHHHHHHHHHHHH
T ss_pred HHHHHHCC---CCHHHHHHHHHHHHHH
Confidence 66666532 2234566677777665
No 106
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=20.58 E-value=7.3e+02 Score=23.50 Aligned_cols=109 Identities=19% Similarity=0.265 Sum_probs=70.4
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHh
Q 006478 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (643)
Q Consensus 310 L~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie 389 (643)
+.++..+..++....+. ...+-|+|.+.++=....|.+ +.+|..-|++.++.+...|..+|-+|+.
T Consensus 2 ~~~~iekAT~~~l~~~d----w~~ileicD~In~~~~~~k~a----------~rai~krl~~~n~~v~l~AL~LLe~~vk 67 (139)
T cd03567 2 LEAWLNKATNPSNREED----WEAIQAFCEQINKEPEGPQLA----------VRLLAHKIQSPQEKEALQALTVLEACMK 67 (139)
T ss_pred HHHHHHHHcCccCCCCC----HHHHHHHHHHHHcCCccHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34566666665543222 334456777765433233432 3566777889999988999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhc-----CCChhHHHHHHHHHHHhc
Q 006478 390 QDPNLLRSYVVRQEGIPLLGLLVKGMIT-----DFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 390 ~dp~lvR~~i~~q~~~~Ll~~Li~~ll~-----d~~~gl~~Q~~e~lk~LL 435 (643)
.--..++..+.+ ..+++.|++++-. ..++.++..+.+.+..+=
T Consensus 68 NCG~~fh~evas---~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 68 NCGERFHSEVGK---FRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HcCHHHHHHHHh---HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 887777766654 3467778886632 246677777777666653
No 107
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=20.53 E-value=3.5e+02 Score=25.09 Aligned_cols=74 Identities=7% Similarity=0.074 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHH
Q 006478 488 PEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVD 567 (643)
Q Consensus 488 ~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~ 567 (643)
-++-..|||++. +. -...+..++.+.+-++.++...++-||..+-+|+.---.-|+..+.....+..++.
T Consensus 18 ~~~il~icd~I~----~~------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~ 87 (133)
T cd03561 18 WALNLELCDLIN----LK------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK 87 (133)
T ss_pred HHHHHHHHHHHh----CC------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence 345567788753 11 11222344555556777899999999999999998877778888888777777666
Q ss_pred HHhH
Q 006478 568 AFVA 571 (643)
Q Consensus 568 ~~~~ 571 (643)
++..
T Consensus 88 l~~~ 91 (133)
T cd03561 88 IAKN 91 (133)
T ss_pred HhCC
Confidence 6643
No 108
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=20.44 E-value=6.4e+02 Score=24.90 Aligned_cols=73 Identities=10% Similarity=0.133 Sum_probs=47.2
Q ss_pred CHHHHHHHHhhcChhhHHHHHHHHhcchHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHhhhh
Q 006478 141 TLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIF 213 (643)
Q Consensus 141 nL~~I~~~i~~~~~~~r~~l~~~i~~~~~Yi~kL~~lF~~~Edle~~~~L~~L~~Ivk~iillNd~~i~E~ll 213 (643)
+-.+|.+.+.......|..+++++-.+..+-.+.+..|-..-+-.+..-...|-..+..+.+-.++..+|.++
T Consensus 34 ~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vL~~y~~~f~f~~~~i~~ALR~~l~~f~lpgE~q~Idril 106 (187)
T smart00222 34 DPQDVADFLSKNEGLNKKAIGDYLGEHDEFNRLVLHAFVDLFDFSAKDLDQALREFLESFRLPGEAQKIDRLL 106 (187)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhcCcCCCcHHHHHHHHHHhCcCCchHHHHHHHH
Confidence 4556676666655567777787776545666667777766666666666666666666666666666666554
No 109
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=20.36 E-value=8.4e+02 Score=24.07 Aligned_cols=30 Identities=10% Similarity=0.041 Sum_probs=13.8
Q ss_pred HHHHHHHcCCChhhHHhhHHHHHHHHhcCh
Q 006478 363 DIVTDALQSQDKKLVLTGTDILILFLNQDP 392 (643)
Q Consensus 363 ~vi~~~L~~~d~~ir~~~tdIl~~iie~dp 392 (643)
+.+-..+++..+.++..|.+.|..++++-+
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCC
Confidence 333333445555555666666665555555
No 110
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=20.28 E-value=7.6e+02 Score=28.47 Aligned_cols=87 Identities=23% Similarity=0.237 Sum_probs=59.9
Q ss_pred HHHHHhhcC-----H----HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHH
Q 006478 298 YVVSLLKDD-----S----TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDA 368 (643)
Q Consensus 298 eIV~~Lq~d-----~----~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~ 368 (643)
+|..+++++ + +.|..+|..+.+. .+.-.|+.+.+.|+++|.-. ...|| .=.+--+-.+++-+
T Consensus 310 el~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~-~~~~~k~laLrvL~~ml~~Q-------~~~l~-DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 310 ELPKMLCEGSFSVWEQHFAEILLLLLEVLSDS-EDEIIKKLALRVLREMLTNQ-------PARLF-DSTEIAICKVLEAA 380 (516)
T ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHHccc-hhhHHHHHHHHHHHHHHHhc-------hHhhh-chHHHHHHHHHHHH
Confidence 577788876 2 2345566777653 34457888999999999731 11222 22334456677777
Q ss_pred HcCCChhhHHhhHHHHHHHHhcChH
Q 006478 369 LQSQDKKLVLTGTDILILFLNQDPN 393 (643)
Q Consensus 369 L~~~d~~ir~~~tdIl~~iie~dp~ 393 (643)
-...|..++.++-|-+.++..|+|.
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~P~ 405 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHLPL 405 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhCch
Confidence 6777888899999999999999996
Done!