Query 006478
Match_columns 643
No_of_seqs 149 out of 251
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 02:08:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rrp_B Nuclear pore complex pr 98.9 3.2E-09 1.1E-13 98.4 9.1 98 15-112 27-133 (134)
2 1xke_A RAN-binding protein 2; 98.2 7.4E-06 2.5E-10 75.4 9.8 100 15-114 13-121 (130)
3 3n7c_A ABR034WP; nuclear pore 98.1 7.4E-06 2.5E-10 75.4 8.8 100 15-114 16-122 (130)
4 2ec1_A Nucleoporin 50 kDa; ran 98.0 2E-05 7E-10 71.9 10.1 96 15-112 18-124 (125)
5 1k5d_B RAN-specific GTPase-act 98.0 2.5E-05 8.6E-10 76.8 10.6 100 15-114 51-162 (201)
6 4hat_B RAN-specific GTPase-act 98.0 2.6E-05 8.8E-10 72.6 9.6 100 15-114 28-137 (140)
7 3m1i_B RAN-specific GTPase-act 97.9 4.1E-05 1.4E-09 74.6 9.8 100 15-114 79-188 (191)
8 2crf_A RAN binding protein 3; 97.8 3.9E-05 1.3E-09 72.2 8.1 92 15-107 32-132 (150)
9 2y8g_A Ranbp3-B, RAN-binding p 97.8 5E-05 1.7E-09 70.5 8.3 92 15-107 20-120 (138)
10 4hxt_A De novo protein OR329; 97.8 0.0025 8.5E-08 61.8 20.9 218 310-570 4-222 (252)
11 1xqr_A HSPBP1 protein; armadil 97.5 0.007 2.4E-07 62.7 21.0 203 306-547 26-239 (296)
12 2jdq_A Importin alpha-1 subuni 97.3 0.043 1.5E-06 57.8 24.3 224 308-571 64-287 (450)
13 4db8_A Armadillo-repeat protei 97.2 0.034 1.2E-06 54.1 20.8 221 308-571 12-233 (252)
14 1qc6_A EVH1 domain from ENA/VA 97.2 0.0011 3.8E-08 60.8 9.2 99 14-114 8-112 (130)
15 4b8j_A Importin subunit alpha- 97.2 0.11 3.9E-06 56.5 26.7 234 309-584 118-351 (528)
16 4hxt_A De novo protein OR329; 97.1 0.12 4E-06 49.7 23.0 202 308-551 44-246 (252)
17 4b8j_A Importin subunit alpha- 97.1 0.46 1.6E-05 51.7 29.9 221 308-572 160-383 (528)
18 1wa5_B Importin alpha subunit; 96.9 0.33 1.1E-05 53.0 27.0 237 308-590 215-455 (530)
19 1wa5_B Importin alpha subunit; 96.9 0.11 3.8E-06 56.8 23.2 222 309-571 131-352 (530)
20 3tpo_A Importin subunit alpha- 96.9 0.6 2.1E-05 51.3 29.0 241 309-591 205-448 (529)
21 1evh_A WH1 domain, protein (ME 96.8 0.0045 1.5E-07 55.3 9.1 95 14-110 8-107 (112)
22 1egx_A VAsp, vasodilator-stimu 96.7 0.0055 1.9E-07 55.0 9.1 96 14-111 8-110 (115)
23 1ddw_A GLGF-domain protein hom 96.7 0.005 1.7E-07 55.7 8.7 99 14-114 8-110 (120)
24 4db6_A Armadillo repeat protei 96.7 0.27 9.2E-06 46.3 21.0 194 310-545 14-208 (210)
25 4db8_A Armadillo-repeat protei 96.6 0.51 1.8E-05 45.6 23.1 196 308-545 54-250 (252)
26 2jdq_A Importin alpha-1 subuni 96.5 0.52 1.8E-05 49.4 24.2 202 308-550 192-394 (450)
27 3tpo_A Importin subunit alpha- 96.5 0.12 4.2E-06 56.9 19.9 222 309-570 120-345 (529)
28 4db6_A Armadillo repeat protei 96.3 0.51 1.8E-05 44.3 20.6 181 357-570 9-190 (210)
29 3ul1_B Importin subunit alpha- 96.1 0.76 2.6E-05 50.3 23.2 241 309-591 186-429 (510)
30 1i2h_A PSD-ZIP45(homer-1C/VESL 96.1 0.029 9.9E-07 53.5 10.0 101 11-113 10-114 (168)
31 3ul1_B Importin subunit alpha- 95.7 0.26 8.9E-06 54.1 17.5 221 309-569 101-325 (510)
32 2jp2_A Spred-2, sprouty-relate 95.5 0.065 2.2E-06 48.8 9.5 96 13-110 16-120 (126)
33 2z6h_A Catenin beta-1, beta-ca 95.3 1.5 5E-05 49.4 22.4 233 309-585 225-480 (644)
34 1jdh_A Beta-catenin; beta-cate 95.3 3.2 0.00011 44.4 24.0 233 308-585 101-333 (529)
35 1xod_A Spred1; sprouty, EVH1, 95.0 0.075 2.6E-06 47.8 8.4 97 13-111 7-112 (118)
36 2z6h_A Catenin beta-1, beta-ca 95.0 5.3 0.00018 44.7 25.8 234 308-586 98-331 (644)
37 4fdd_A Transportin-1; heat rep 94.7 5.4 0.00019 46.1 25.4 210 301-547 38-286 (852)
38 1mke_A WIP - N-WAsp, fusion pr 94.6 0.15 5.1E-06 47.9 9.5 95 17-113 48-142 (152)
39 2ifs_A N-WAsp, wiskott-aldrich 94.6 0.15 5.3E-06 48.6 9.7 95 17-113 65-159 (169)
40 1jdh_A Beta-catenin; beta-cate 94.3 1.8 6.3E-05 46.4 18.9 185 356-572 13-197 (529)
41 4fdd_A Transportin-1; heat rep 94.2 6.8 0.00023 45.2 24.7 185 360-569 215-409 (852)
42 3b2a_A TON_1937, putative unch 93.5 1.2 4.2E-05 44.8 14.0 152 358-549 31-182 (265)
43 3now_A UNC-45 protein, SD10334 93.2 8.5 0.00029 45.1 23.0 235 305-571 418-676 (810)
44 4gmo_A Putative uncharacterize 93.2 0.64 2.2E-05 53.2 13.4 191 354-560 29-227 (684)
45 1ibr_B P95, importin beta-1 su 93.0 3.8 0.00013 42.7 18.2 230 308-569 172-417 (462)
46 2z6g_A B-catenin; FULL-length, 93.0 4.6 0.00016 46.8 20.4 213 310-571 117-329 (780)
47 2z6g_A B-catenin; FULL-length, 92.9 17 0.00058 42.0 27.6 252 305-582 189-463 (780)
48 2qk2_A LP04448P; mini spindles 92.8 4.4 0.00015 39.2 17.2 194 312-556 19-216 (242)
49 1ibr_B P95, importin beta-1 su 92.1 12 0.00043 38.7 21.8 210 307-547 34-289 (462)
50 3now_A UNC-45 protein, SD10334 92.0 6.3 0.00021 46.2 19.7 201 309-592 581-782 (810)
51 3opb_A SWI5-dependent HO expre 90.7 12 0.00041 43.6 20.0 264 301-591 369-728 (778)
52 1qgr_A Protein (importin beta 90.4 28 0.00095 39.6 23.4 230 308-569 172-417 (876)
53 1w63_A Adapter-related protein 90.3 26 0.0009 39.1 22.8 69 362-440 315-383 (618)
54 2bpt_A Importin beta-1 subunit 90.2 11 0.00037 42.9 19.3 242 307-590 38-293 (861)
55 3nmw_A APC variant protein; AR 89.8 9.1 0.00031 40.1 16.8 212 323-570 97-315 (354)
56 3nmz_A APC variant protein; pr 89.2 20 0.00068 39.0 19.5 211 324-570 214-431 (458)
57 2vgl_A Adaptor protein complex 88.6 4.1 0.00014 46.1 13.9 68 360-435 146-215 (621)
58 2bpt_A Importin beta-1 subunit 88.3 38 0.0013 38.3 23.7 218 309-556 180-409 (861)
59 3grl_A General vesicular trans 87.4 21 0.0007 40.8 18.4 106 489-595 137-244 (651)
60 1qgr_A Protein (importin beta 87.2 45 0.0015 37.8 22.0 240 307-590 34-286 (876)
61 1xqr_A HSPBP1 protein; armadil 86.7 30 0.001 35.2 21.4 166 375-571 55-220 (296)
62 3grl_A General vesicular trans 86.4 46 0.0016 37.9 20.5 233 285-550 143-398 (651)
63 1xm9_A Plakophilin 1; armadill 86.3 31 0.0011 36.9 18.8 207 310-544 4-218 (457)
64 1w63_A Adapter-related protein 86.0 48 0.0016 37.0 25.1 207 360-593 142-397 (618)
65 3syx_A Sprouty-related, EVH1 d 82.5 6.7 0.00023 35.7 9.4 95 15-112 16-120 (130)
66 2lyd_A Decapping protein 1; DC 82.2 4.8 0.00017 36.7 8.4 94 16-112 37-132 (134)
67 3nmz_A APC variant protein; pr 81.9 28 0.00096 37.8 16.0 204 355-589 184-406 (458)
68 3nmw_A APC variant protein; AR 80.5 58 0.002 33.9 19.6 225 325-589 47-290 (354)
69 3ltm_A Alpha-REP4; protein eng 80.5 34 0.0012 31.7 14.3 77 306-384 17-105 (211)
70 3fga_B Serine/threonine-protei 77.8 9.8 0.00033 40.9 10.4 126 298-439 237-369 (403)
71 1xm9_A Plakophilin 1; armadill 77.5 64 0.0022 34.4 17.1 176 362-571 4-196 (457)
72 2npp_B PP2A, B subunit, serine 77.5 6.6 0.00023 42.9 9.1 72 167-242 160-248 (449)
73 2qkl_A DCP1 protein, SPBC3B9.2 76.7 9.6 0.00033 34.5 8.5 92 15-110 31-124 (127)
74 1u6g_C TIP120 protein, CAND1; 75.5 1.2E+02 0.0041 36.4 20.4 218 307-571 5-224 (1230)
75 2qk2_A LP04448P; mini spindles 75.1 59 0.002 31.0 16.7 162 367-569 22-185 (242)
76 2vgl_B AP-2 complex subunit be 72.6 58 0.002 36.0 15.5 83 347-437 101-190 (591)
77 3l6x_A Catenin delta-1; cateni 70.4 90 0.0031 35.0 16.4 159 408-592 310-477 (584)
78 2qk1_A Protein STU2; STU2P, XM 69.3 88 0.003 30.6 15.2 184 323-545 29-219 (249)
79 2vgl_A Adaptor protein complex 68.7 95 0.0032 34.7 16.3 67 364-439 333-401 (621)
80 3tt9_A Plakophilin-2; cell adh 67.8 55 0.0019 32.2 12.5 114 310-435 10-123 (233)
81 2qk1_A Protein STU2; STU2P, XM 60.7 31 0.0011 33.9 9.2 77 307-390 145-221 (249)
82 1u6g_C TIP120 protein, CAND1; 59.5 94 0.0032 37.3 14.8 199 308-547 86-285 (1230)
83 3ltj_A Alpharep-4; protein eng 55.7 1.2E+02 0.0041 27.5 14.8 24 361-384 77-100 (201)
84 2jak_A Serine/threonine-protei 43.5 63 0.0021 34.5 8.5 71 298-378 282-356 (392)
85 4ffb_C Protein STU2; tubulin f 42.0 2.2E+02 0.0076 27.7 12.1 184 325-544 24-210 (278)
86 2vgl_B AP-2 complex subunit be 40.5 4E+02 0.014 29.1 18.4 68 310-393 15-82 (591)
87 3ltj_A Alpharep-4; protein eng 40.4 2.1E+02 0.0071 25.8 14.0 40 348-387 92-134 (201)
88 3a6p_A Exportin-5; exportin-5, 40.3 4.9E+02 0.017 31.4 16.9 85 406-505 249-333 (1204)
89 3m1i_C Exportin-1; heat repeat 39.7 1.4E+02 0.0047 35.4 11.8 108 318-435 812-928 (1049)
90 1oyz_A Hypothetical protein YI 39.1 2.6E+02 0.009 26.6 13.1 19 362-380 130-148 (280)
91 2of3_A ZYG-9; multifunctional 38.8 3.1E+02 0.011 27.4 13.5 155 370-551 56-242 (266)
92 3l6x_A Catenin delta-1; cateni 38.1 1.9E+02 0.0066 32.3 11.9 111 310-434 50-161 (584)
93 1b3u_A Protein (protein phosph 36.6 4E+02 0.014 28.0 18.7 105 309-435 165-270 (588)
94 3gs3_A Symplekin, LD45768P; he 36.0 2.6E+02 0.009 27.8 11.4 61 308-383 53-113 (257)
95 3tt9_A Plakophilin-2; cell adh 35.8 79 0.0027 31.1 7.4 81 506-588 41-121 (233)
96 1dvp_A HRS, hepatocyte growth 33.2 2.6E+02 0.0088 26.8 10.6 110 310-436 6-115 (220)
97 1x5b_A Signal transducing adap 32.8 3E+02 0.01 25.4 11.1 108 310-434 16-123 (163)
98 3zyq_A Hepatocyte growth facto 31.0 2.7E+02 0.0092 27.0 10.3 111 309-436 8-118 (226)
99 1wa5_C Importin alpha RE-expor 30.2 7E+02 0.024 28.9 21.8 90 299-397 26-127 (960)
100 2fv2_A RCD1 required for cell 30.0 4.4E+02 0.015 26.5 12.3 77 492-569 71-154 (268)
101 3eg5_B Protein diaphanous homo 29.9 4.6E+02 0.016 27.4 12.6 132 324-464 134-273 (383)
102 1w9c_A CRM1 protein, exportin 29.7 2.5E+02 0.0087 29.0 10.3 75 307-390 114-197 (321)
103 2f31_A Diaphanous protein homo 29.1 3.9E+02 0.013 25.6 11.3 134 324-466 68-209 (233)
104 3o2t_A Symplekin; heat repeat, 27.3 4.9E+02 0.017 27.5 12.2 71 308-396 63-133 (386)
105 2of3_A ZYG-9; multifunctional 26.0 3.7E+02 0.013 26.9 10.5 91 307-399 131-246 (266)
106 1juq_A ADP-ribosylation factor 25.2 4.1E+02 0.014 24.6 11.5 110 310-436 14-128 (171)
107 3ltm_A Alpha-REP4; protein eng 25.2 3.8E+02 0.013 24.2 16.6 91 343-434 30-139 (211)
108 3tjz_B Coatomer subunit gamma; 25.1 1.2E+02 0.0042 31.7 7.0 65 361-435 140-204 (355)
109 1mhq_A ADP-ribosylation factor 24.3 4E+02 0.014 24.1 10.6 108 311-435 3-115 (148)
110 3ldz_A STAM-1, signal transduc 22.2 4.2E+02 0.014 23.6 9.9 107 311-435 7-113 (140)
111 3opb_A SWI5-dependent HO expre 21.8 2.5E+02 0.0086 32.6 9.3 102 327-435 576-682 (778)
112 1te4_A Conserved protein MTH18 20.0 2.2E+02 0.0074 24.2 6.6 74 343-432 53-129 (131)
No 1
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=98.90 E-value=3.2e-09 Score=98.38 Aligned_cols=98 Identities=22% Similarity=0.400 Sum_probs=84.6
Q ss_pred CceEEEEeC-CCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCccccccc--CeEEEecCC-----C-
Q 006478 15 QRVKVYRLN-DDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWRDP-----E- 85 (643)
Q Consensus 15 ~RVKvY~L~-~~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQq--eTlIvW~e~-----~- 85 (643)
.|+|||.++ ++++|.++|+|.+..-.........|++|.+.....+|.+.|.++-.|+.+. +.-++|+-. +
T Consensus 27 ~raKL~~~~~~~~~WkerG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~~ 106 (134)
T 1rrp_B 27 NRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELP 106 (134)
T ss_dssp EEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCSSCCCBCSTTCTTEEEEEEEECTTSSC
T ss_pred EEEEEEEEcccCCCcccCcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecCCceEeecCCCCeEEEEEcccccCCCC
Confidence 699999996 4689999999999987766667899999999999999999999999999864 689999732 1
Q ss_pred ccccccccccCccchhHHHHHHHHHhh
Q 006478 86 YSTELALSFQEPTGCSYIWDNICNVQR 112 (643)
Q Consensus 86 ~~~dlALSFQe~~GC~~iw~~I~~vQ~ 112 (643)
....+|+.|..++.|+++++.|.+.|.
T Consensus 107 k~~~~~irfk~~e~A~~f~~~~~e~~~ 133 (134)
T 1rrp_B 107 KPEQLAIRFKTPEEAALFKCKFEEAQS 133 (134)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEECCHHHHHHHHHHHHHHhh
Confidence 125799999999999999999999874
No 2
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=98.16 E-value=7.4e-06 Score=75.36 Aligned_cols=100 Identities=23% Similarity=0.361 Sum_probs=83.8
Q ss_pred CceEEEEeC-CCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCccccccc--CeEEEec-----CCCc
Q 006478 15 QRVKVYRLN-DDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWR-----DPEY 86 (643)
Q Consensus 15 ~RVKvY~L~-~~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQq--eTlIvW~-----e~~~ 86 (643)
.|+|+|.+. ++++|.++|+|-+..-.........|++|.+.....+|.+.|.++-.|+... +.-++|+ |.+.
T Consensus 13 ~raKL~~~~~~~~~WkERG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~~ 92 (130)
T 1xke_A 13 QRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDA 92 (130)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCTTSCEEECTTCSSCEEEEEEECSSSCS
T ss_pred EEEEEEEEcCCCCCcccCcEEEEEEEEcCCCCeEEEEEEEcCCCeEEEecEeCCCcEEeecCCCCeEEEEEecccCCCCC
Confidence 489999995 3578999999999987666667799999999999999999999999998764 5678897 3221
Q ss_pred -cccccccccCccchhHHHHHHHHHhhcc
Q 006478 87 -STELALSFQEPTGCSYIWDNICNVQRNL 114 (643)
Q Consensus 87 -~~dlALSFQe~~GC~~iw~~I~~vQ~~~ 114 (643)
-.-+|+.|-.++-++++.+.|.+.|...
T Consensus 93 ~~~~~~irfks~e~a~~f~~~~ee~k~~~ 121 (130)
T 1xke_A 93 KLEQLAAKFKTPELAEEFKQKFEECQRLL 121 (130)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 2359999999999999999999999754
No 3
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=98.11 E-value=7.4e-06 Score=75.39 Aligned_cols=100 Identities=9% Similarity=0.225 Sum_probs=80.5
Q ss_pred CceEEEEeCC-CCCceeccceEEEEEEeC-CCcceeEEEEecCCCcceeEeecCCCccccccc---CeEEEecCCCc--c
Q 006478 15 QRVKVYRLND-DGKWDDQGTGHVTVDSME-RSEELCLFVIDEEDNETILLHRISPDDIYRKQE---DTIISWRDPEY--S 87 (643)
Q Consensus 15 ~RVKvY~L~~-~~~W~D~GTG~~s~~~~e-~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQq---eTlIvW~e~~~--~ 87 (643)
.|+|+|.+.. +++|.++|+|-+..-... ....+.|++|.+.....+|.+.|.++-.|++.. .+.+.|..++. -
T Consensus 16 ~raKL~~f~~~~~~WkerG~G~lkil~~k~~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~~~~~~v~~~~~~dgk~ 95 (130)
T 3n7c_A 16 EKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGMGHVLLNTSVVKSFKYQPIDADNENLIKWPIITDGKL 95 (130)
T ss_dssp EEEEEEEECC---CEEEEEEEEEEEEEETTEEEEEEEEEEC-CCCCEEEEEECCTTBCCEESCTTCTTEEEEEEEETTEE
T ss_pred EEEEEEEEeCCCCCchhcceEEEEEEEecCCCCEEEEEEEecCCceEEeeccccCCcEEeEcCCCCccEEEEEecCCCce
Confidence 5899999964 468999999999985443 245689999999988999999999999998875 68888873321 2
Q ss_pred ccccccccCccchhHHHHHHHHHhhcc
Q 006478 88 TELALSFQEPTGCSYIWDNICNVQRNL 114 (643)
Q Consensus 88 ~dlALSFQe~~GC~~iw~~I~~vQ~~~ 114 (643)
.-+||.|-.++-++++.+.|.+.|...
T Consensus 96 ~~~~lrfks~e~A~~f~~~iee~~~~~ 122 (130)
T 3n7c_A 96 ETFIIKVKQKADGRRLVGAVADAQQAM 122 (130)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHhhh
Confidence 469999999999999999999998654
No 4
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=2e-05 Score=71.94 Aligned_cols=96 Identities=10% Similarity=0.266 Sum_probs=79.6
Q ss_pred CceEEEEeCCCCCceeccceEEEEEEeCCCcceeEEEEecCC-CcceeEeecCCCcccccc-cCeEEEecCCC---cc--
Q 006478 15 QRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEED-NETILLHRISPDDIYRKQ-EDTIISWRDPE---YS-- 87 (643)
Q Consensus 15 ~RVKvY~L~~~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~d-~~~lL~~~I~~~~~YqrQ-qeTlIvW~e~~---~~-- 87 (643)
.|+|+|...+ ++|.++|+|-+..--.+ ...+.|++|.+.. +..+|.+.|.++-.|+.. .+++.+|+=+. .|
T Consensus 18 ~raKLf~~~~-~~WkERGvG~lki~~~k-~~k~RllmR~d~~~~kv~lN~~i~~~m~~~~~g~~~~~~~~~~~~~~d~~~ 95 (125)
T 2ec1_A 18 KKCKLFYKKD-NEFKEKGIGTLHLKPTA-NQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKN 95 (125)
T ss_dssp EEEEEEEECS-SSEEEEEEEEEEEEECS-SSSEEEEEEESSSSCCBSCCEECCSSCCEECCTTTEEEEEECCSSCSCSSS
T ss_pred EeeEEEEecC-CCcccccEEEEEeeecC-CCcEEEEEEecCCCCEEEEeeEEcCCCeEEecCCCcEEEEEccCCcccCCC
Confidence 6999999974 79999999999986433 5678999999986 789999999999999987 47888886322 12
Q ss_pred ----ccccccccCccchhHHHHHHHHHhh
Q 006478 88 ----TELALSFQEPTGCSYIWDNICNVQR 112 (643)
Q Consensus 88 ----~dlALSFQe~~GC~~iw~~I~~vQ~ 112 (643)
.-+||.|-.++-++++.+.|.+.|.
T Consensus 96 ~~~~~~~~lrfk~~e~a~~f~~~~~e~k~ 124 (125)
T 2ec1_A 96 ATMPVTMLIRVKTSEDADELHKILLEKKD 124 (125)
T ss_dssp SSSCEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEECCHHHHHHHHHHHHHhhc
Confidence 3599999999999999999988774
No 5
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=98.00 E-value=2.5e-05 Score=76.82 Aligned_cols=100 Identities=19% Similarity=0.339 Sum_probs=83.0
Q ss_pred CceEEEEe--C-CCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCccccccc--CeEEEec---CCCc
Q 006478 15 QRVKVYRL--N-DDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWR---DPEY 86 (643)
Q Consensus 15 ~RVKvY~L--~-~~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQq--eTlIvW~---e~~~ 86 (643)
.|.|+|.+ + ++++|.++|+|-+..-.......+.|++|.+.....+|.+.|.++-.|+++. +.-++|+ |...
T Consensus 51 ~RaKLf~f~~d~~~~~WKERGvG~lkIlk~k~t~k~RlvMR~d~~~kV~LN~~I~~~m~~~~~~~s~ks~v~~~~~d~ad 130 (201)
T 1k5d_B 51 MRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFAD 130 (201)
T ss_dssp EEEEEEEECCTTSSCCEEEEEEEEEEEEECSSSCCEEEEEEETTTCCEEEEEECCSSCCCCBCSSCSSEEEEEEEEECTT
T ss_pred EeeeEEEecccccCCCccccceEEEEEEEcCCCCcEEEEEEECCcceEEEeeEecCCceeeecCCCCceEEEEeccccCC
Confidence 69999999 3 3578999999999987655567799999999999999999999999999874 5678993 2221
Q ss_pred c----ccccccccCccchhHHHHHHHHHhhcc
Q 006478 87 S----TELALSFQEPTGCSYIWDNICNVQRNL 114 (643)
Q Consensus 87 ~----~dlALSFQe~~GC~~iw~~I~~vQ~~~ 114 (643)
| .-+|+.|-.++-++.+...|.+.|...
T Consensus 131 ~~~k~e~~~iRfks~e~A~~f~~~~ee~k~~~ 162 (201)
T 1k5d_B 131 ECPKPELLAIRFLNAENAQKFKTKFEECRKEI 162 (201)
T ss_dssp SSCEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 1 349999999999999999999998764
No 6
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=97.97 E-value=2.6e-05 Score=72.62 Aligned_cols=100 Identities=16% Similarity=0.300 Sum_probs=82.2
Q ss_pred CceEEEEeC-CCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCccccccc--CeEEEec---CCCcc-
Q 006478 15 QRVKVYRLN-DDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWR---DPEYS- 87 (643)
Q Consensus 15 ~RVKvY~L~-~~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQq--eTlIvW~---e~~~~- 87 (643)
.|+|+|.+. +++.|.++|+|-+..-.......+.|++|.+.....+|.+.|.++-.|++.. +.-++|+ |-..|
T Consensus 28 ~raKLf~f~~~~~~WkerG~G~lkilk~k~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~s~k~~v~~~~~D~sdg~ 107 (140)
T 4hat_B 28 VRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGE 107 (140)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTSS
T ss_pred EeEEEEEEcCCCCCcccccEEEEEEEEcCCCCeEEEEEEecCcceEEEEeEecCCeEEeEcCCCCceEEEEccccCCCCC
Confidence 589999995 3578999999999987655566799999999999999999999999999874 4567885 21112
Q ss_pred ---ccccccccCccchhHHHHHHHHHhhcc
Q 006478 88 ---TELALSFQEPTGCSYIWDNICNVQRNL 114 (643)
Q Consensus 88 ---~dlALSFQe~~GC~~iw~~I~~vQ~~~ 114 (643)
.-+|+.|-.++-++++.+.+.+.|...
T Consensus 108 ~~~~~~~iRfk~~e~A~~f~~~~ee~~~~n 137 (140)
T 4hat_B 108 AEAFTFAIRFGSKENADKFKEEFEKAQEIN 137 (140)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 459999999999999999999888643
No 7
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=97.89 E-value=4.1e-05 Score=74.55 Aligned_cols=100 Identities=14% Similarity=0.257 Sum_probs=82.5
Q ss_pred CceEEEEeCC-CCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCccccccc--CeEEEecC---CCcc-
Q 006478 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWRD---PEYS- 87 (643)
Q Consensus 15 ~RVKvY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQq--eTlIvW~e---~~~~- 87 (643)
.|+|+|.+.. ++.|.++|+|-+..-.......+.|++|.+.....+|.+.|.++-.|++.. +.-++|+= -..|
T Consensus 79 ~RaKLf~f~~~~~~WKERGvG~lkilk~ket~k~RllMR~d~~~kV~LN~~I~~~m~~~~~~~sdks~v~~~~~D~sdge 158 (191)
T 3m1i_B 79 VRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGE 158 (191)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTSS
T ss_pred EeeEEEEEecCCCCccceeEEEEEEEEcCCCCeEEEEEEecCcceEEEeeecCCCcEEeECCCCCceEEEEecCcCCCCC
Confidence 6999999953 578999999999987655566799999999999999999999999999984 45778862 1113
Q ss_pred ---ccccccccCccchhHHHHHHHHHhhcc
Q 006478 88 ---TELALSFQEPTGCSYIWDNICNVQRNL 114 (643)
Q Consensus 88 ---~dlALSFQe~~GC~~iw~~I~~vQ~~~ 114 (643)
.-+||.|-.++-++.+.+.|.+.|...
T Consensus 159 ~k~e~~aIRFk~~E~A~eF~~~~eeaq~~n 188 (191)
T 3m1i_B 159 AEAFTFAIRFGSKENADKFKEEFEKAQEIN 188 (191)
T ss_dssp CEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 369999999999999999999888643
No 8
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=97.82 E-value=3.9e-05 Score=72.23 Aligned_cols=92 Identities=14% Similarity=0.242 Sum_probs=73.9
Q ss_pred CceEEEEeCC-CCCceeccceEEEEEEeC----CCcceeEEEEecCCCcceeEeecCCCcccccccCeEEEec--CCCc-
Q 006478 15 QRVKVYRLND-DGKWDDQGTGHVTVDSME----RSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWR--DPEY- 86 (643)
Q Consensus 15 ~RVKvY~L~~-~~~W~D~GTG~~s~~~~e----~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~--e~~~- 86 (643)
.|+|+|.... +++|.++|+|.+..-... ....+.|++|.+.....+|.+.|.++-.|++..++-++|+ |++.
T Consensus 32 ~raKL~~fd~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~k~~~~~~~d~~d~ 111 (150)
T 2crf_A 32 MQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTEDQ 111 (150)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECCTTCCEECCSSSEEEEEEEBSSSC
T ss_pred EEeEEEEEcCCCCCcccceeEEEEEEeccccCCCCccEEEEEEEcCcceEEeeeeccCCceeecCCCCEEEEEeecCCCC
Confidence 6899999953 578999999999876543 2345899999999899999999999999999999999999 4321
Q ss_pred -cccccccccCccchhHHHHHH
Q 006478 87 -STELALSFQEPTGCSYIWDNI 107 (643)
Q Consensus 87 -~~dlALSFQe~~GC~~iw~~I 107 (643)
-.-+++.|-.++.++ .+..|
T Consensus 112 ~~~~~lirfk~~e~a~-lf~~~ 132 (150)
T 2crf_A 112 GVKVFLISASSKDTGQ-LYAAL 132 (150)
T ss_dssp CEEEEEEECCHHHHHH-HHHHH
T ss_pred ceEEEEEEECCHHHHH-HHHHH
Confidence 246899999888874 44444
No 9
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=97.80 E-value=5e-05 Score=70.50 Aligned_cols=92 Identities=12% Similarity=0.182 Sum_probs=72.6
Q ss_pred CceEEEEeCC-CCCceeccceEEEEEEeCC----CcceeEEEEecCCCcceeEeecCCCcccccccCeEEEecCCC----
Q 006478 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMER----SEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPE---- 85 (643)
Q Consensus 15 ~RVKvY~L~~-~~~W~D~GTG~~s~~~~e~----~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~e~~---- 85 (643)
.|+|+|.+.. ++.|.++|+|.+..-.... ...+.|++|.+.....+|.+.|.++-.|++..+.-++|+-.+
T Consensus 20 ~raKL~~f~~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~k~~~~~~~d~~d~ 99 (138)
T 2y8g_A 20 MQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIRITAMDTEDQ 99 (138)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEEECTTTCCEEEEEEEEETTTCCEEEEEECCTTCCEEEEETTEEEEECCC--CC
T ss_pred EEeEEEEEecCCCCchhceEEEEEEEEeccCCCCCccEEEEEEEcCcceEEEeeEecCCceeecCCCCEEEEEEecCCCC
Confidence 5899999964 5789999999998865431 246899999999999999999999999999889999998321
Q ss_pred ccccccccccCccchhHHHHHH
Q 006478 86 YSTELALSFQEPTGCSYIWDNI 107 (643)
Q Consensus 86 ~~~dlALSFQe~~GC~~iw~~I 107 (643)
.-.-+++.|-.++-+ +.+..+
T Consensus 100 ~~~~~lirfk~~e~a-~lf~~~ 120 (138)
T 2y8g_A 100 GVKVFLISASSKDTG-QLYAAL 120 (138)
T ss_dssp CCCEEEEECCHHHHH-HHHHHH
T ss_pred ceEEEEEEECCHHHH-HHHHHH
Confidence 124689999888776 444433
No 10
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.79 E-value=0.0025 Score=61.76 Aligned_cols=218 Identities=15% Similarity=0.149 Sum_probs=157.2
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHh
Q 006478 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (643)
Q Consensus 310 L~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie 389 (643)
++.|...+++++ .+.|..++..|..++.-.. ..-+.+++.|.++.+-..|.+++..++..++..|..+..
T Consensus 4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~--------~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 73 (252)
T 4hxt_A 4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPA--------SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 73 (252)
T ss_dssp HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCH--------HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCc--------HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 567777787765 5778888877777654321 234567788999999999999999999999999999999
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcC
Q 006478 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASC 468 (643)
Q Consensus 390 ~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~-~~~~~L~~pl~~~~ 468 (643)
.++.. |..+.+.. .+..|++. +.+.++.++.....+|..|..... +....+.+ ..++.|++-+.+
T Consensus 74 ~~~~~-~~~~~~~~---~i~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~~i~~L~~~l~~-- 139 (252)
T 4hxt_A 74 GPDEA-IKAIVDAG---GVEVLVKL-LTSTDSEVQKEAARALANIASGPD-------EAIKAIVDAGGVEVLVKLLTS-- 139 (252)
T ss_dssp SCHHH-HHHHHHTT---HHHHHHHH-TTCSSHHHHHHHHHHHHHHTTSCH-------HHHHHHHHTTHHHHHHHHTTC--
T ss_pred CChHH-HHHHHHCC---CHHHHHHH-HcCCCHHHHHHHHHHHHHHHcCCH-------HHHHHHHHCCCHHHHHHHHcC--
Confidence 88874 55555433 34455554 456789999999999999974211 11222333 356666554321
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcCC
Q 006478 469 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 548 (643)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~ 548 (643)
..+.+....+..|+.+...++. .+..+...+++..+..++.+.+.-++..|++++.++.. .
T Consensus 140 -----------------~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~ 200 (252)
T 4hxt_A 140 -----------------TDSEVQKEAARALANIASGPDE-AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-G 200 (252)
T ss_dssp -----------------SCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-S
T ss_pred -----------------CCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc-C
Confidence 1244566777888877765443 34466778899999999998888999999999999876 4
Q ss_pred hhHHHHHHHhhCChHHHHHHHh
Q 006478 549 DEHLINHFVKNNLLKPIVDAFV 570 (643)
Q Consensus 549 D~fy~ryiik~~lf~Pv~~~~~ 570 (643)
+.-..+.+++.+.+.++++++.
T Consensus 201 ~~~~~~~l~~~~~i~~L~~ll~ 222 (252)
T 4hxt_A 201 PTSAIKAIVDAGGVEVLQKLLT 222 (252)
T ss_dssp BHHHHHHHHHTTHHHHHHHGGG
T ss_pred CHHHHHHHHHCCCHHHHHHHHC
Confidence 4557788999999999988875
No 11
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.54 E-value=0.007 Score=62.69 Aligned_cols=203 Identities=10% Similarity=0.140 Sum_probs=142.3
Q ss_pred CHHHHHHHHHHhCCC----------CCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHH-HHcCCCh
Q 006478 306 DSTFIQELFARLRSP----------TTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTD-ALQSQDK 374 (643)
Q Consensus 306 d~~fL~eLf~~l~~~----------~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~-~L~~~d~ 374 (643)
+.+-|++....+.+| +.+.+.|..+..-|.++|. +.. .. ..+++.|-++.+-. .|.++++
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~---~~d--na----~~~~~~G~l~~Lv~~lL~s~~~ 96 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE---NMD--NA----ADFCQLSGMHLLVGRYLEAGAA 96 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT---SHH--HH----HHHHHTTHHHHHHHTTTTCSSH
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh---Chh--hH----HHHHHcCCHHHHHHHHHcCCCH
Confidence 456788888888887 3344566666655555544 222 12 24577898888877 8999999
Q ss_pred hhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH
Q 006478 375 KLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE 454 (643)
Q Consensus 375 ~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~ 454 (643)
.+|..|+.+|..+...+|. .|+.+++... +..|++.|-.+.++.++...+-||-.|.-... +....|.+ .
T Consensus 97 ~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g~---l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~---~~~~~~~~---~ 166 (296)
T 1xqr_A 97 GLRWRAAQLIGTCSQNVAA-IQEQVLGLGA---LRKLLRLLDRDACDTVRVKALFAISCLVREQE---AGLLQFLR---L 166 (296)
T ss_dssp HHHHHHHHHHHHHHTTCHH-HHHHHHHTTH---HHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH---HHHHHHHH---T
T ss_pred HHHHHHHHHHHHHHhCCHH-HHHHHHHCCC---HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc---HHHHHHHH---C
Confidence 9999999999999999998 5777776533 34455555556678898888888888763211 11223333 2
Q ss_pred hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhh
Q 006478 455 KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLV 534 (643)
Q Consensus 455 ~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~ 534 (643)
..++.|+.-|.+. ...+....|-.|+..+.. +-..+..+...+++..++.|+.+.+.-++
T Consensus 167 ggi~~L~~lL~~~-------------------d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~ 226 (296)
T 1xqr_A 167 DGFSVLMRAMQQQ-------------------VQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFH 226 (296)
T ss_dssp THHHHHHHHHHSS-------------------CHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHH
T ss_pred CCHHHHHHHHcCC-------------------CHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHH
Confidence 5667776655321 234555667777777666 34456678889999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 006478 535 VAAVRFVRTILSR 547 (643)
Q Consensus 535 LaAlRf~R~ii~l 547 (643)
-.|++.+.+++..
T Consensus 227 ~~al~aL~~l~~~ 239 (296)
T 1xqr_A 227 EHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999876
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.32 E-value=0.043 Score=57.85 Aligned_cols=224 Identities=13% Similarity=0.098 Sum_probs=159.5
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHH
Q 006478 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (643)
Q Consensus 308 ~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~i 387 (643)
..++.|...+++++ +.+-|..++..|..++.-.. . .-+.+++.|+++.+-..|.+++..+|..|+..|..+
T Consensus 64 ~~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~----~----~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l 134 (450)
T 2jdq_A 64 GVVARFVEFLKRKE-NCTLQFESAWVLTNIASGNS----L----QTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI 134 (450)
T ss_dssp THHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCH----H----HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCH----H----HHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 57888888887652 45678888888887765221 1 124567899999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 006478 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 467 (643)
Q Consensus 388 ie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~ 467 (643)
...+|. .|..+.+.. .+..|++.+-.+.+..++.+...+|..|.....-.. .. . +....++.|++-+.+
T Consensus 135 ~~~~~~-~~~~~~~~~---~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~-~----~~~~~l~~L~~~l~~- 203 (450)
T 2jdq_A 135 AGDSTM-CRDYVLDCN---ILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP-EF-A----KVSPCLNVLSWLLFV- 203 (450)
T ss_dssp HTTCHH-HHHHHHHTT---CHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC-CG-G----GTGGGHHHHHHHTTC-
T ss_pred ccCCHH-HHHHHHHCC---CHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC-CH-H----HHHHHHHHHHHHHcc-
Confidence 998877 466565533 455666666556789999999999999985321000 11 1 124556666554321
Q ss_pred CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcC
Q 006478 468 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (643)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l 547 (643)
.++++....+..|+.+..+.+- .+..+...+++..++.++...+.-++..|++.+.++..-
T Consensus 204 ------------------~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 204 ------------------SDTDVLADACWALSYLSDGPND-KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTSSSHH-HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred ------------------CCHHHHHHHHHHHHHHHCCCcH-HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 1245666778888887765433 334566778899999999888888999999999998765
Q ss_pred ChhHHHHHHHhhCChHHHHHHHhH
Q 006478 548 HDEHLINHFVKNNLLKPIVDAFVA 571 (643)
Q Consensus 548 ~D~fy~ryiik~~lf~Pv~~~~~~ 571 (643)
.++ ..+.+++.+++.+++.++..
T Consensus 265 ~~~-~~~~~~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 265 DDI-QTQVILNCSALQSLLHLLSS 287 (450)
T ss_dssp CHH-HHHHHHTTTHHHHHHHHTTC
T ss_pred ChH-HHHHHHHCccHHHHHHHHcC
Confidence 554 56678888999999888754
No 13
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.23 E-value=0.034 Score=54.14 Aligned_cols=221 Identities=11% Similarity=0.089 Sum_probs=153.1
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHH
Q 006478 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (643)
Q Consensus 308 ~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~i 387 (643)
...++++..+.+++. +.+..++.-|..+..- . ...-+.+++.|.++.+-..|.+++..++..++.+|..+
T Consensus 12 ~~~~~~~~~L~s~~~--~~~~~a~~~L~~~l~~----~----~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 81 (252)
T 4db8_A 12 SELPQMTQQLNSDDM--QEQLSATRKFSQILSD----G----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81 (252)
T ss_dssp CSHHHHHHHHHSSCS--SHHHHHHHHHHHHHHH----H----HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCCCH--HHHHHHHHHHHHHHcC----C----CchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 346777777776544 5677777766544332 1 12234578899999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHh
Q 006478 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITA 466 (643)
Q Consensus 388 ie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~-~~~~~L~~pl~~ 466 (643)
...++.. +..+.+.. .+..|++.| .+.++.++.+...+|..|..... .+ ...+.+ ..++.|++-|.+
T Consensus 82 ~~~~~~~-~~~i~~~g---~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~----~~---~~~~~~~~~i~~L~~lL~~ 149 (252)
T 4db8_A 82 ASGGNEQ-IQAVIDAG---ALPALVQLL-SSPNEQILQEALWALSNIASGGN----EQ---IQAVIDAGALPALVQLLSS 149 (252)
T ss_dssp TTSCHHH-HHHHHHTT---HHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCH----HH---HHHHHHTTHHHHHHHGGGC
T ss_pred hcCCHHH-HHHHHHcC---CHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCc----hH---HHHHHHCCCHHHHHHHHhC
Confidence 9988874 44444432 345556544 55789999999999999964322 11 122232 356666554421
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhc
Q 006478 467 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 546 (643)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~ 546 (643)
..+.+....+..|+.+....+. .+..+...+++..++.++...+.-++..|++.+.++..
T Consensus 150 -------------------~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 150 -------------------PNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp -------------------SCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred -------------------CCHHHHHHHHHHHHHHHcCChH-HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 1234445566666666654433 34456778899999999998888999999999999885
Q ss_pred CChhHHHHHHHhhCChHHHHHHHhH
Q 006478 547 RHDEHLINHFVKNNLLKPIVDAFVA 571 (643)
Q Consensus 547 l~D~fy~ryiik~~lf~Pv~~~~~~ 571 (643)
.++ -....+++.+.+.+++.++..
T Consensus 210 ~~~-~~~~~~~~~g~i~~L~~ll~~ 233 (252)
T 4db8_A 210 GGN-EQKQAVKEAGALEKLEQLQSH 233 (252)
T ss_dssp SCH-HHHHHHHHTTHHHHHHTTTTC
T ss_pred CCH-HHHHHHHHCCcHHHHHHHhCC
Confidence 444 466778899999999887754
No 14
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=97.23 E-value=0.0011 Score=60.79 Aligned_cols=99 Identities=15% Similarity=0.245 Sum_probs=73.6
Q ss_pred CCceEEEEeC-CCCCceeccce-----EEEEEEeCCCcceeEEEEecCCCcceeEeecCCCcccccccCeEEEecCCCcc
Q 006478 14 MQRVKVYRLN-DDGKWDDQGTG-----HVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYS 87 (643)
Q Consensus 14 ~~RVKvY~L~-~~~~W~D~GTG-----~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~e~~~~ 87 (643)
.-|++||.-+ +.+.|...|+| .|+...........|+-+...+...+++..|.++-.|.+--.+..+|.+.+
T Consensus 8 ~~~A~V~~~d~~~~~W~~~g~G~~~l~~V~i~~~~~~~~~Riv~~~~~~~~vi~n~~i~~~~~y~~~~~~Fh~w~~~~-- 85 (130)
T 1qc6_A 8 QARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQVVINYSIVKGLKYNQATPTFHQWRDAR-- 85 (130)
T ss_dssp EEEEEEEEEETTTTEEEECC-----CEEEEEEEETTTTEEEEEEECTTTCCEEEEEECCTTCEEEEEETTEEEEECSS--
T ss_pred EEEEEEEEECCCCCceeECCCCceeeeEEEEEecCCCcEEEEEEEeCCCCeEEEeeEEeCCcEEeccCCeeEEEEcCC--
Confidence 3589999995 35689999998 333333233222334445447888999999999999999999999999885
Q ss_pred ccccccccCccchhHHHHHHHHHhhcc
Q 006478 88 TELALSFQEPTGCSYIWDNICNVQRNL 114 (643)
Q Consensus 88 ~dlALSFQe~~GC~~iw~~I~~vQ~~~ 114 (643)
.-++|+|++.+-+....+.+.+.....
T Consensus 86 ~~~GL~F~se~eA~~F~~~~~~al~~~ 112 (130)
T 1qc6_A 86 QVYGLNFASKEEATTFSNAMLFALNIM 112 (130)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999988888877766544
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.19 E-value=0.11 Score=56.55 Aligned_cols=234 Identities=14% Similarity=0.121 Sum_probs=162.9
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHH
Q 006478 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (643)
Q Consensus 309 fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~ii 388 (643)
.++.|...+.+++ +.+-|..++..|..++.-. ...-..+++.|.++.+-..|.+++..++..|+..|..+.
T Consensus 118 ~v~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~--------~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~ 188 (528)
T 4b8j_A 118 VVPRFVQFLTRED-FPQLQFEAAWALTNIASGT--------SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA 188 (528)
T ss_dssp CHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSC--------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCC--------HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 4566666665542 2456777777776665421 123345678899999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcC
Q 006478 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC 468 (643)
Q Consensus 389 e~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~ 468 (643)
..+|. .|..+.... .+..|++.|-.+.++.++...+.+|..|...... +.. .....+++.|++-|.+
T Consensus 189 ~~~~~-~~~~i~~~g---~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~--~~~-----~~~~~~l~~L~~lL~~-- 255 (528)
T 4b8j_A 189 GDSPK-CRDLVLANG---ALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ--PSF-----EQTRPALPALARLIHS-- 255 (528)
T ss_dssp HTCHH-HHHHHHHTT---CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSC--CCH-----HHHTTHHHHHHHHTTC--
T ss_pred CCChh-hHHHHHHCC---cHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC--CcH-----HHHHHHHHHHHHHHCC--
Confidence 87776 466565532 3556676665778899999999999999875421 111 1124556666554321
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcCC
Q 006478 469 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 548 (643)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~ 548 (643)
..+.+....|..|+.+....+.++ ..++..+++..++.++...+.-++..|++.+.++..-.
T Consensus 256 -----------------~~~~v~~~a~~aL~~l~~~~~~~~-~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~ 317 (528)
T 4b8j_A 256 -----------------NDEEVLTDACWALSYLSDGTNDKI-QAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGD 317 (528)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTSSCHHHH-HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred -----------------CCHHHHHHHHHHHHHHHcCCHHHH-HHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCC
Confidence 134567778888888886655443 34566788999999999888899999999999998755
Q ss_pred hhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHH
Q 006478 549 DEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVL 584 (643)
Q Consensus 549 D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~L 584 (643)
++ ....+++.+++.+++.++... ....+...||.
T Consensus 318 ~~-~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~A~~ 351 (528)
T 4b8j_A 318 DA-QTQCIIDHQALPCLLSLLTQN-LKKSIKKEACW 351 (528)
T ss_dssp HH-HHHHHHTTTHHHHHHHHHHSC-CCHHHHHHHHH
T ss_pred HH-HHHHHHHhhhHHHHHHHHcCC-CcHHHHHHHHH
Confidence 54 667788999999999988632 23344444443
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.10 E-value=0.12 Score=49.73 Aligned_cols=202 Identities=15% Similarity=0.116 Sum_probs=140.7
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHH
Q 006478 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (643)
Q Consensus 308 ~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~i 387 (643)
..++.|...+++++ .+-|..++..|..++.-. ...-..+++.|.++.+-..|.+++..++..++..|..+
T Consensus 44 g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~--------~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l 113 (252)
T 4hxt_A 44 GGVEVLVKLLTSTD--SEVQKEAARALANIASGP--------DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 113 (252)
T ss_dssp THHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSC--------HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCC--------hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46888888888754 566777777766654321 12334567889999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHh
Q 006478 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITA 466 (643)
Q Consensus 388 ie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY-~~~~~~L~~pl~~ 466 (643)
..++|.. +..+.+. -.+..|++. +.+.++.++.....+|..|.... ++ ....+. ...++.|++-+.+
T Consensus 114 ~~~~~~~-~~~~~~~---~~i~~L~~~-l~~~~~~~~~~a~~~L~~l~~~~----~~---~~~~~~~~~~i~~L~~ll~~ 181 (252)
T 4hxt_A 114 ASGPDEA-IKAIVDA---GGVEVLVKL-LTSTDSEVQKEAARALANIASGP----DE---AIKAIVDAGGVEVLVKLLTS 181 (252)
T ss_dssp TTSCHHH-HHHHHHT---THHHHHHHH-TTCSCHHHHHHHHHHHHHHTTSC----HH---HHHHHHHTTHHHHHHHHTTC
T ss_pred HcCCHHH-HHHHHHC---CCHHHHHHH-HcCCCHHHHHHHHHHHHHHHcCC----HH---HHHHHHHCcCHHHHHHHHCC
Confidence 9888875 4334442 245566654 45678899999999999986431 11 112222 3455666554321
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhc
Q 006478 467 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 546 (643)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~ 546 (643)
..+.+....+..|+-+.. +....+..+...+++..+..++...+.-++-.|++.++++..
T Consensus 182 -------------------~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 182 -------------------TDSEVQKEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp -------------------SCHHHHHHHHHHHHHHTT-SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred -------------------CCHHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 123455566677776665 344456677788999999999998888999999999999887
Q ss_pred CChhH
Q 006478 547 RHDEH 551 (643)
Q Consensus 547 l~D~f 551 (643)
.....
T Consensus 242 ~~~~~ 246 (252)
T 4hxt_A 242 GGWLE 246 (252)
T ss_dssp TCBCC
T ss_pred CCCcc
Confidence 65543
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.06 E-value=0.46 Score=51.73 Aligned_cols=221 Identities=15% Similarity=0.134 Sum_probs=154.4
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHH-cCCChhhHHhhHHHHHH
Q 006478 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDAL-QSQDKKLVLTGTDILIL 386 (643)
Q Consensus 308 ~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L-~~~d~~ir~~~tdIl~~ 386 (643)
..++.|...+.++ +.+-|..++..|..+|.-. +. .-..+++.|.++.+-..| .+.+..++..++..|..
T Consensus 160 g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~----~~----~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 160 GAVPIFVKLLGSS--SDDVREQAVWALGNVAGDS----PK----CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp THHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTC----HH----HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCC----hh----hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4678888888774 4567788888887776421 12 223456789999888888 67788999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHH
Q 006478 387 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVIT 465 (643)
Q Consensus 387 iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~-~~~~~L~~pl~ 465 (643)
+....|...... . ...+..|++.+ .+.++.++.....+|..|.+... .....+.+ ..++.|++-|.
T Consensus 230 L~~~~~~~~~~~-~----~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~-------~~~~~~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 230 FCRGKPQPSFEQ-T----RPALPALARLI-HSNDEEVLTDACWALSYLSDGTN-------DKIQAVIEAGVCPRLVELLL 296 (528)
T ss_dssp HHCSSSCCCHHH-H----TTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCH-------HHHHHHHHTTCHHHHHHHTT
T ss_pred HHcCCCCCcHHH-H----HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCH-------HHHHHHHHcCHHHHHHHHHc
Confidence 998876532221 1 33566666654 66789999999999998875421 11222333 45666665442
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcc-cchhhHHHHHHHHHH
Q 006478 466 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRR-EKYLVVAAVRFVRTI 544 (643)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~-~k~L~LaAlRf~R~i 544 (643)
+ ..+.+....+..|+-++.... .....++..+++..+..++... +.-++-.|++.+.++
T Consensus 297 ~-------------------~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 297 H-------------------PSPSVLIPALRTVGNIVTGDD-AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp C-------------------SCHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred C-------------------CChhHHHHHHHHHHHHHcCCH-HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 2 123445566777777776433 3445677788999999999887 888999999999998
Q ss_pred hcCChhHHHHHHHhhCChHHHHHHHhHh
Q 006478 545 LSRHDEHLINHFVKNNLLKPIVDAFVAN 572 (643)
Q Consensus 545 i~l~D~fy~ryiik~~lf~Pv~~~~~~n 572 (643)
..- +.-....++..+++.+++.++...
T Consensus 357 ~~~-~~~~~~~~~~~~~i~~L~~lL~~~ 383 (528)
T 4b8j_A 357 TAG-NKDQIQAVINAGIIGPLVNLLQTA 383 (528)
T ss_dssp HTS-CHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HCC-CHHHHHHHHHCCCHHHHHHHHhcC
Confidence 864 444677899999999999998643
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.90 E-value=0.33 Score=53.03 Aligned_cols=237 Identities=12% Similarity=0.132 Sum_probs=158.4
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhh-hccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHH
Q 006478 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 386 (643)
Q Consensus 308 ~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~a-k~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~ 386 (643)
..++.|...+.+ .+.+-++.++..|..+|.-. ...+ .....|+++.+-..|.++|..++..++..|..
T Consensus 215 ~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~---------~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 283 (530)
T 1wa5_B 215 NAMEPILGLFNS--NKPSLIRTATWTLSNLCRGKKPQPD---------WSVVSQALPTLAKLIYSMDTETLVDACWAISY 283 (530)
T ss_dssp TCHHHHHHGGGS--CCHHHHHHHHHHHHHHHCCSSSCCC---------HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCCCCCCc---------HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 457778888876 34567788888888777543 1111 23457899999999999999999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHH
Q 006478 387 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVIT 465 (643)
Q Consensus 387 iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~-~~~~~L~~pl~ 465 (643)
+....+..+.. +.. ...+..|++.| .+.++.++.....+|..|..... .....+.+ ..++.|++-|.
T Consensus 284 L~~~~~~~~~~-~~~---~~~v~~Lv~lL-~~~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~~l~~L~~lL~ 351 (530)
T 1wa5_B 284 LSDGPQEAIQA-VID---VRIPKRLVELL-SHESTLVQTPALRAVGNIVTGND-------LQTQVVINAGVLPALRLLLS 351 (530)
T ss_dssp HHSSCHHHHHH-HHH---TTCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCH-------HHHHHHHHTTHHHHHHHHTT
T ss_pred HhCCCHHHHHH-HHh---cCcHHHHHHHH-CCCChhhHHHHHHHHHHHHcCCH-------HHHHHHHHcchHHHHHHHHc
Confidence 99998875544 333 23456666655 56788888888888888764211 11222222 34555544332
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHh
Q 006478 466 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (643)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii 545 (643)
+ ..+.+-...|..|+-+....+..++ .++..+++..++.++...+.-++-.|+..+.++.
T Consensus 352 ~-------------------~~~~vr~~A~~aL~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 411 (530)
T 1wa5_B 352 S-------------------PKENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 411 (530)
T ss_dssp C-------------------SCHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred C-------------------CCHHHHHHHHHHHHHHHcCCHHHHH-HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1 1233444556666666654433333 4557788999999998888889999999999987
Q ss_pred cCChh--HHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHHHHHH
Q 006478 546 SRHDE--HLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 590 (643)
Q Consensus 546 ~l~D~--fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~I 590 (643)
...+. -+.+++++.+++.|+++++... +.-+-.++++.+..+
T Consensus 412 ~~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~al~aL~~l 455 (530)
T 1wa5_B 412 SGGLQRPDIIRYLVSQGCIKPLCDLLEIA---DNRIIEVTLDALENI 455 (530)
T ss_dssp HHTTTCTHHHHHHHHTTCHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHH
Confidence 65443 4778999999999999988643 233444444444444
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.89 E-value=0.11 Score=56.80 Aligned_cols=222 Identities=12% Similarity=0.091 Sum_probs=154.2
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHH
Q 006478 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (643)
Q Consensus 309 fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~ii 388 (643)
.++.|...+.+++ +.+-|..++..|..++.-. +. .-..+++.|.++.+-..|.+++..+|..|+..|..+.
T Consensus 131 ~i~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~----~~----~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~ 201 (530)
T 1wa5_B 131 VVPRLVEFMRENQ-PEMLQLEAAWALTNIASGT----SA----QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA 201 (530)
T ss_dssp CHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSC----HH----HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCC----HH----HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4566666666542 3456777777666655421 11 2245678999999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcC
Q 006478 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC 468 (643)
Q Consensus 389 e~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~ 468 (643)
..+|. .|..+... -.+..|++.+ .+.++.++.....+|..|.....-. .. + ......++.|+.-+.+
T Consensus 202 ~~~~~-~~~~~~~~---~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~---~~-~--~~~~~~l~~L~~lL~~-- 268 (530)
T 1wa5_B 202 GDSTD-YRDYVLQC---NAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQ---PD-W--SVVSQALPTLAKLIYS-- 268 (530)
T ss_dssp TTCHH-HHHHHHHT---TCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSC---CC-H--HHHGGGHHHHHHHTTC--
T ss_pred CCCcc-chHHHHHc---CcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCC---Cc-H--HHHHhHHHHHHHHHcC--
Confidence 88876 45555553 2455566654 4578899999999999998643111 11 1 1224556666553311
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcCC
Q 006478 469 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 548 (643)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~ 548 (643)
..+.+....|..|+.++...+-.. ..++..+++..++.++...+.-++..|++.+.++..-.
T Consensus 269 -----------------~d~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~ 330 (530)
T 1wa5_B 269 -----------------MDTETLVDACWAISYLSDGPQEAI-QAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 330 (530)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHSSCHHHH-HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred -----------------CCHHHHHHHHHHHHHHhCCCHHHH-HHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC
Confidence 134566777888888876554433 34566788999999999888889999999999987655
Q ss_pred hhHHHHHHHhhCChHHHHHHHhH
Q 006478 549 DEHLINHFVKNNLLKPIVDAFVA 571 (643)
Q Consensus 549 D~fy~ryiik~~lf~Pv~~~~~~ 571 (643)
++ ..+.++..+++.+++.++..
T Consensus 331 ~~-~~~~~~~~~~l~~L~~lL~~ 352 (530)
T 1wa5_B 331 DL-QTQVVINAGVLPALRLLLSS 352 (530)
T ss_dssp HH-HHHHHHHTTHHHHHHHHTTC
T ss_pred HH-HHHHHHHcchHHHHHHHHcC
Confidence 54 55677888999998888753
No 20
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.88 E-value=0.6 Score=51.30 Aligned_cols=241 Identities=14% Similarity=0.135 Sum_probs=152.9
Q ss_pred HHHHHHHHhCCCCCc---HHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHH
Q 006478 309 FIQELFARLRSPTTL---EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILI 385 (643)
Q Consensus 309 fL~eLf~~l~~~~~~---~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~ 385 (643)
.++-|...+.++..+ ..-.+.+...|..+|.-....... ....|+++++-..|.+++..++..++-.|.
T Consensus 205 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~--------~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~ 276 (529)
T 3tpo_A 205 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL--------DAVEQILPTLVRLLHHNDPEVLADSCWAIS 276 (529)
T ss_dssp CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCH--------HHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhH--------HHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 466677777665432 233455555555554422222211 112467888888999999999999999999
Q ss_pred HHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHH
Q 006478 386 LFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVIT 465 (643)
Q Consensus 386 ~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~ 465 (643)
.+.++++..... +... -.+..|++. +.+.++.++.....+|..|..... ..+...++ ...++.|++-|
T Consensus 277 ~l~~~~~~~~~~-v~~~---g~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~---~~~~~i~~---~g~l~~L~~LL- 344 (529)
T 3tpo_A 277 YLTDGPNERIEM-VVKK---GVVPQLVKL-LGATELPIVTPALRAIGNIVTGTD---EQTQKVID---AGALAVFPSLL- 344 (529)
T ss_dssp HHHSSCHHHHHH-HHTT---TCHHHHHHH-HTCSCHHHHHHHHHHHHHHTTSCH---HHHHHHHH---TTGGGGHHHHT-
T ss_pred HhhhhhhhhHHH-HHhc---cchHHHHHH-hcCCChhHHHHHHHHHHHHHccch---HHHHHHhh---cccHHHHHHHH-
Confidence 999988775443 3332 234455554 456788888888888887753211 11111111 12333333322
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHh
Q 006478 466 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (643)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii 545 (643)
. ..++.+-...|-.|+-+.... ...+..+...+++..++.++.+.+.-++-.|...+.++.
T Consensus 345 ~------------------~~~~~i~~~a~~aL~nl~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 345 T------------------NPKTNIQKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYT 405 (529)
T ss_dssp T------------------CSSHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred c------------------CCCHHHHHHHHHHHHHHhccc-HHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1 012333344555555555433 334556778889999999999998889999999999988
Q ss_pred cCChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHHHHHHH
Q 006478 546 SRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 591 (643)
Q Consensus 546 ~l~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~Ir 591 (643)
.-.+.-..++|++.+.+.|+++++.. .|.=+-..+|+-++.|.
T Consensus 406 ~~~~~~~~~~l~~~g~i~~L~~LL~~---~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 406 SGGTVEQIVYLVHCGIIEPLMNLLSA---KDTKIIQVILDAISNIF 448 (529)
T ss_dssp HHSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHCcCHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Confidence 77677788999999999999998853 34444556677666664
No 21
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=96.82 E-value=0.0045 Score=55.30 Aligned_cols=95 Identities=19% Similarity=0.324 Sum_probs=74.2
Q ss_pred CCceEEEEeCC-CCCceecc--ceE--EEEEEeCCCcceeEEEEecCCCcceeEeecCCCcccccccCeEEEecCCCccc
Q 006478 14 MQRVKVYRLND-DGKWDDQG--TGH--VTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYST 88 (643)
Q Consensus 14 ~~RVKvY~L~~-~~~W~D~G--TG~--~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~e~~~~~ 88 (643)
.-||.||..++ .+.|.-.| .|. ++..+........++.++-.+...+++..|.++-.|.+--.+.-.|.+.+ +
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~~~g~s~V~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w~~~~--~ 85 (112)
T 1evh_A 8 QARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGLKYNQATQTFHQWRDAR--Q 85 (112)
T ss_dssp EEEEEEEEEETTTTEEEEGGGCCSCEEEEEEEETTTTEEEEEEEETTTCCEEEEEEECTTCCCBCCSSSEEEEECSS--C
T ss_pred EEEEEEEEEcCCCCceEECCCCCCceEEEEEEECCCCEEEEEEEECCCCcEEEeeEecCCceEEecCccceeEecCC--E
Confidence 35889999854 45899999 676 44333322334455557767889999999999999999999999999985 7
Q ss_pred cccccccCccchhHHHHHHHHH
Q 006478 89 ELALSFQEPTGCSYIWDNICNV 110 (643)
Q Consensus 89 dlALSFQe~~GC~~iw~~I~~v 110 (643)
=++|.|+..+.+....+.+.+.
T Consensus 86 ~~GLnF~se~eA~~F~~~v~~a 107 (112)
T 1evh_A 86 VYGLNFGSKEDANVFASAMMHA 107 (112)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHHH
Confidence 8999999999998887766554
No 22
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=96.74 E-value=0.0055 Score=54.97 Aligned_cols=96 Identities=16% Similarity=0.276 Sum_probs=75.7
Q ss_pred CCceEEEEeCC-CCCceeccc---eE--EEEEEeCCCcceeEEEEecC-CCcceeEeecCCCcccccccCeEEEecCCCc
Q 006478 14 MQRVKVYRLND-DGKWDDQGT---GH--VTVDSMERSEELCLFVIDEE-DNETILLHRISPDDIYRKQEDTIISWRDPEY 86 (643)
Q Consensus 14 ~~RVKvY~L~~-~~~W~D~GT---G~--~s~~~~e~~~~~~l~V~sE~-d~~~lL~~~I~~~~~YqrQqeTlIvW~e~~~ 86 (643)
.-||.||.-++ .+.|.-.|+ |. +...+........++.++-. +...+++..|.++-.|.+.-.+.-.|.+.+
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~g~~gvs~V~~~~d~~~~~yrI~~~~l~~~~~vv~~~~l~~~l~y~~~~p~FH~w~~~~- 86 (115)
T 1egx_A 8 SSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQWRDAR- 86 (115)
T ss_dssp EEEEECBEECTTTSSCCBSSCSCCCCEEEEEEEETTTTEEEEEEEESSTTCCEEEEEEECSSCCCCCSSTTEEEEESSS-
T ss_pred EEEEEEEEEcCCCCceeECCCCCCCccEEEEEEeCCCCEEEEEEEEcCCCCEEEEeeEEcCCceEEecCccceEEecCC-
Confidence 45889999854 456999998 55 54444333344556667766 889999999999999999999999999985
Q ss_pred cccccccccCccchhHHHHHHHHHh
Q 006478 87 STELALSFQEPTGCSYIWDNICNVQ 111 (643)
Q Consensus 87 ~~dlALSFQe~~GC~~iw~~I~~vQ 111 (643)
+=++|.||..+.+....+.+.+.-
T Consensus 87 -~~~GLnF~se~eA~~F~~~v~~al 110 (115)
T 1egx_A 87 -QVWGLNFGSKEDAAQFAAGMASAL 110 (115)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHH
T ss_pred -EEEEEecCCHHHHHHHHHHHHHHH
Confidence 789999999999988877776543
No 23
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=96.73 E-value=0.005 Score=55.72 Aligned_cols=99 Identities=15% Similarity=0.273 Sum_probs=76.3
Q ss_pred CCceEEEEeCC-C-CCcee--ccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCcccccccCeEEEecCCCcccc
Q 006478 14 MQRVKVYRLND-D-GKWDD--QGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTE 89 (643)
Q Consensus 14 ~~RVKvY~L~~-~-~~W~D--~GTG~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~e~~~~~d 89 (643)
.-|++||.-++ . +.|.. .|.|-|+..+. ...+. +-|.+-.+...+++..|.++-.|.+.-.+.-.|.+...+.-
T Consensus 8 ~~rA~V~~~D~~tk~~W~p~g~~~~~V~~~~d-~~~~~-yRIv~~~~~~vv~n~~i~~~l~y~~a~p~FhqW~d~~~~~~ 85 (120)
T 1ddw_A 8 STRAHVFQIDPNTKKNWVPTSKHAVTVSYFYD-STRNV-YRIISLDGSKAIINSTITPNMTFTKTSQKFGQWADSRANTV 85 (120)
T ss_dssp EEEEEEEEECTTTSCSEEESCSSCEEEEEEEE-TTTTE-EEEEEEETTEEEEEEECCTTCCCEECSSSEEEEEETTTTEE
T ss_pred EEEEEEEEEcCCCCCceEeCCCCceEEEEEEc-CCCCE-EEEEEccCCEEEEeCEecCCcEEeeCCccccEEEcCCCcEE
Confidence 35899999976 3 48999 55555554443 33333 33334558889999999999999999999999999876788
Q ss_pred ccccccCccchhHHHHHHHHHhhcc
Q 006478 90 LALSFQEPTGCSYIWDNICNVQRNL 114 (643)
Q Consensus 90 lALSFQe~~GC~~iw~~I~~vQ~~~ 114 (643)
++|.||.++-+...-+.+.++....
T Consensus 86 ~GLnF~s~~eA~~F~~~~~~~~~~l 110 (120)
T 1ddw_A 86 YGLGFSSEHHLSKFAEKFQEFKEAA 110 (120)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877777766543
No 24
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.65 E-value=0.27 Score=46.29 Aligned_cols=194 Identities=13% Similarity=0.130 Sum_probs=133.8
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHh
Q 006478 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (643)
Q Consensus 310 L~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie 389 (643)
-+-|...++++ +.+-|..++..|..++.-. ...-..+++.|.++.+-..|.+++..++..|+-.|..+..
T Consensus 14 ~~~l~~LL~s~--~~~v~~~a~~~L~~l~~~~--------~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 14 LPQMVQQLNSP--DQQELQSALRKLSQIASGG--------NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (210)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHTSC--------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHhcCC--CHHHHHHHHHHHHHHHcCC--------HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 34455555553 4577888888887766321 1223567788999999999999999999999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHhcC
Q 006478 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITASC 468 (643)
Q Consensus 390 ~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY-~~~~~~L~~pl~~~~ 468 (643)
+++.. +..+.+.. .+..|++.| .+.++.++.....+|..|.... ++ ....+. ...++.|++-+.+
T Consensus 84 ~~~~~-~~~i~~~g---~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~----~~---~~~~~~~~~~i~~L~~ll~~-- 149 (210)
T 4db6_A 84 GGNEQ-IQAVIDAG---ALPALVQLL-SSPNEQILQEALWALSNIASGG----NE---QIQAVIDAGALPALVQLLSS-- 149 (210)
T ss_dssp SCHHH-HHHHHHTT---CHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSC----HH---HHHHHHHTTHHHHHHHHTTC--
T ss_pred CCcHH-HHHHHHCC---CHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCC----HH---HHHHHHHcCcHHHHHHHHcC--
Confidence 88874 44455433 344555544 5668999999999999987421 11 122222 3456666654421
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHh
Q 006478 469 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (643)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii 545 (643)
....+....+..|+-++.. +...+..+...+.+..+..++...+.-++-.|+.+++++-
T Consensus 150 -----------------~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 150 -----------------PNEQILQEALWALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp -----------------SCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred -----------------CCHHHHHHHHHHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 1234556667777777764 3345667888889999999999888889999999998763
No 25
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.60 E-value=0.51 Score=45.58 Aligned_cols=196 Identities=14% Similarity=0.130 Sum_probs=136.7
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHH
Q 006478 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (643)
Q Consensus 308 ~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~i 387 (643)
..++.|...+++++ .+-|..++..|..++.-. +. .-..+++.|.++.+-..|.+++..++..++..|..+
T Consensus 54 g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~----~~----~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 123 (252)
T 4db8_A 54 GALPALVQLLSSPN--EQILQEALWALSNIASGG----NE----QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123 (252)
T ss_dssp THHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSC----HH----HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCC----HH----HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 57888999898765 567778887777665321 12 224567889999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHh
Q 006478 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITA 466 (643)
Q Consensus 388 ie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY-~~~~~~L~~pl~~ 466 (643)
...++..... +.+. -.+..|++.| .+.++.++.....+|..|.... + +....+. ...++.|++-+.+
T Consensus 124 ~~~~~~~~~~-~~~~---~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~----~---~~~~~~~~~~~i~~L~~ll~~ 191 (252)
T 4db8_A 124 ASGGNEQIQA-VIDA---GALPALVQLL-SSPNEQILQEALWALSNIASGG----N---EQIQAVIDAGALPALVQLLSS 191 (252)
T ss_dssp TTSCHHHHHH-HHHT---THHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSC----H---HHHHHHHHTTCHHHHHHGGGC
T ss_pred hcCCchHHHH-HHHC---CCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCC----h---HHHHHHHHCCCHHHHHHHHCC
Confidence 9888764333 3332 2455666655 5678899999999999987532 1 1122222 3456666554321
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHh
Q 006478 467 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (643)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii 545 (643)
..+.+....+..|+-++..+ ...+..+...+++..+..++...+.-++-.|.+.+.++.
T Consensus 192 -------------------~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 192 -------------------PNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp -------------------SSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred -------------------CCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 13345566677777766443 344556778889999999999888889999998887653
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.51 E-value=0.52 Score=49.43 Aligned_cols=202 Identities=10% Similarity=0.035 Sum_probs=136.3
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHH
Q 006478 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (643)
Q Consensus 308 ~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~i 387 (643)
..++-|...++++ +.+-|.+++..|..+|... + .....+++.|+++.+-..|.+++..++..++..|..+
T Consensus 192 ~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~----~----~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 192 PCLNVLSWLLFVS--DTDVLADACWALSYLSDGP----N----DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp GGHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSS----H----HHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC--CHHHHHHHHHHHHHHHCCC----c----HHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 4677777777654 3466777777777665421 1 1234567889999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHh
Q 006478 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITA 466 (643)
Q Consensus 388 ie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY-~~~~~~L~~pl~~ 466 (643)
..+++...+. +... -.+..|++.+ .+.++.++.....+|..|.... + .....+. .+.++.|++-|.+
T Consensus 262 ~~~~~~~~~~-~~~~---~~l~~L~~ll-~~~~~~vr~~a~~~L~~l~~~~----~---~~~~~~~~~~~l~~L~~~l~~ 329 (450)
T 2jdq_A 262 VTGDDIQTQV-ILNC---SALQSLLHLL-SSPKESIKKEACWTISNITAGN----R---AQIQTVIDANIFPALISILQT 329 (450)
T ss_dssp TTSCHHHHHH-HHTT---THHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSC----H---HHHHHHHHTTHHHHHHHHHHH
T ss_pred hhCChHHHHH-HHHC---ccHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCC----H---HHHHHHHHCCCHHHHHHHHhc
Confidence 9998875433 3332 3566666654 5568888888888888775311 1 1122222 3556777666543
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhc
Q 006478 467 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 546 (643)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~ 546 (643)
. .+.+-...|-.|+-++...+.....+++..+++..+..++...+.-++..|+..+.+++.
T Consensus 330 ~-------------------~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 330 A-------------------EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp S-------------------CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred C-------------------CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1 123444556666666665443333455677899999999998888899999999999886
Q ss_pred CChh
Q 006478 547 RHDE 550 (643)
Q Consensus 547 l~D~ 550 (643)
..+.
T Consensus 391 ~~~~ 394 (450)
T 2jdq_A 391 LGEQ 394 (450)
T ss_dssp HHHH
T ss_pred hchh
Confidence 5443
No 27
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.49 E-value=0.12 Score=56.94 Aligned_cols=222 Identities=15% Similarity=0.154 Sum_probs=145.0
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHH
Q 006478 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (643)
Q Consensus 309 fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~ii 388 (643)
.++.|...+... .+.+-+.++..-|..++.- - +. --+.+++.|.++.+-..|.+++..++..|+-.|..|.
T Consensus 120 ~ip~Lv~lL~~~-~~~~~q~~Aa~aL~nia~~---~-~~----~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa 190 (529)
T 3tpo_A 120 LIPKFVSFLGKT-DCSPIQFESAWALTNIASG---T-SE----QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA 190 (529)
T ss_dssp HHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTS---C-HH----HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCC-CCHHHHHHHHHHHHHHHcC---C-HH----HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 344444444322 2345556666555544432 1 11 1246789999999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhcC----CChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHH
Q 006478 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITD----FGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVI 464 (643)
Q Consensus 389 e~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d----~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl 464 (643)
.++|. .|..+.+.... ..|+..+-.. ...++...++-++..+.-....... +. .-...++.|++-|
T Consensus 191 ~~~~~-~r~~i~~~g~i---~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~----~~--~~~~~lp~L~~LL 260 (529)
T 3tpo_A 191 GAGSA-FRDLVIKHGAI---DPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP----LD--AVEQILPTLVRLL 260 (529)
T ss_dssp TTCHH-HHHHHHHTTCH---HHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCC----HH--HHHHHHHHHHHHT
T ss_pred ccCHH-HHHHHHHcCCc---HHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhh----HH--HHhhHHHHHHHHh
Confidence 88887 57777765443 3344444322 2334555666666666533221110 00 1123444444432
Q ss_pred HhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHH
Q 006478 465 TASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTI 544 (643)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~i 544 (643)
. ...+++....|-.|+++..++..+. ..+....++.+++.++.+.+..++..|+|.+.++
T Consensus 261 ~-------------------~~~~~v~~~a~~aL~~l~~~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 261 H-------------------HNDPEVLADSCWAISYLTDGPNERI-EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp T-------------------SSCHHHHHHHHHHHHHHHSSCHHHH-HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred c-------------------CCcHHHHHHHHHHHHHhhhhhhhhH-HHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 1 1234567778888888887665544 4566778999999999999999999999999998
Q ss_pred hcCChhHHHHHHHhhCChHHHHHHHh
Q 006478 545 LSRHDEHLINHFVKNNLLKPIVDAFV 570 (643)
Q Consensus 545 i~l~D~fy~ryiik~~lf~Pv~~~~~ 570 (643)
+...|+ ....++..+.+.+++.++.
T Consensus 321 ~~~~~~-~~~~i~~~g~l~~L~~LL~ 345 (529)
T 3tpo_A 321 VTGTDE-QTQKVIDAGALAVFPSLLT 345 (529)
T ss_dssp TTSCHH-HHHHHHHTTGGGGHHHHTT
T ss_pred HccchH-HHHHHhhcccHHHHHHHHc
Confidence 866554 7788999999999888764
No 28
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.32 E-value=0.51 Score=44.30 Aligned_cols=181 Identities=13% Similarity=0.098 Sum_probs=126.1
Q ss_pred HhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 006478 357 MNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLD 436 (643)
Q Consensus 357 ~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLD 436 (643)
-..|..+.+...|.++|..++..|+..|..+...++...+ .+.+. -.+..|++.| .+.++.++.+...+|..|..
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~-~i~~~---g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQ-AVIDA---GALPALVQLL-SSPNEQILQEALWALSNIAS 83 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHH-HHHHT---THHHHHHHHT-TCSCHHHHHHHHHHHHHHTT
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHH-HHHHc---CCHHHHHHHH-cCCCHHHHHHHHHHHHHHhc
Confidence 3567788899999999999999999999999988887543 34443 2455566554 55689999999999988862
Q ss_pred CCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhh
Q 006478 437 SYTLSGAQRDTIIEIFYE-KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLL 515 (643)
Q Consensus 437 p~~~~~~e~d~fl~~FY~-~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~ 515 (643)
.+ +.....+.+ ..++.|++-|.+ ..+.+....+..|+.+..... ..+..++.
T Consensus 84 ~~-------~~~~~~i~~~g~i~~L~~lL~~-------------------~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~ 136 (210)
T 4db6_A 84 GG-------NEQIQAVIDAGALPALVQLLSS-------------------PNEQILQEALWALSNIASGGN-EQIQAVID 136 (210)
T ss_dssp SC-------HHHHHHHHHTTCHHHHHHHTTC-------------------SCHHHHHHHHHHHHHHTTSCH-HHHHHHHH
T ss_pred CC-------cHHHHHHHHCCCHHHHHHHHcC-------------------CcHHHHHHHHHHHHHHHcCCH-HHHHHHHH
Confidence 11 112223333 356666664422 123444556666666665333 33445678
Q ss_pred ccHHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHHh
Q 006478 516 NNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 570 (643)
Q Consensus 516 ~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~~ 570 (643)
.+++..++.++...+.-++..|+..+.++....++ ....+++.+.+.++++++.
T Consensus 137 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~~g~i~~L~~ll~ 190 (210)
T 4db6_A 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QKQAVKEAGALEKLEQLQS 190 (210)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH-HHHHHHHTTHHHHHHHGGG
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH-HHHHHHHCCCHHHHHHHHh
Confidence 88999999999988889999999999999875454 5678889999999998775
No 29
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.06 E-value=0.76 Score=50.35 Aligned_cols=241 Identities=14% Similarity=0.127 Sum_probs=151.0
Q ss_pred HHHHHHHHhCCCCCc---HHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHH
Q 006478 309 FIQELFARLRSPTTL---EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILI 385 (643)
Q Consensus 309 fL~eLf~~l~~~~~~---~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~ 385 (643)
.++-|...+.+++.+ ..-.+.+...|..+|.-....... ..-.|+++++...|.+++..++..++-.|.
T Consensus 186 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~--------~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~ 257 (510)
T 3ul1_B 186 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL--------DAVEQILPTLVRLLHHNDPEVLADSCWAIS 257 (510)
T ss_dssp CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCH--------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHH--------HHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 466677777665433 233455555555544422222211 112467888888999999999999999999
Q ss_pred HHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHH
Q 006478 386 LFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVIT 465 (643)
Q Consensus 386 ~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~ 465 (643)
.+.++++..... +... -.+..|++. +...+..++.....+|..+.-... ..+...++ ...++. |.
T Consensus 258 ~L~~~~~~~~~~-i~~~---g~i~~Lv~l-L~~~~~~v~~~al~aL~nl~~~~~---~~~~~i~~---~g~l~~----L~ 322 (510)
T 3ul1_B 258 YLTDGPNERIEM-VVKK---GVVPQLVKL-LGATELPIVTPALRAIGNIVTGTD---EQTQKVID---AGALAV----FP 322 (510)
T ss_dssp HHTSSCHHHHHH-HHTT---TCHHHHHHH-HTCSCHHHHHHHHHHHHHHTTSCH---HHHHHHHH---TTGGGG----CC
T ss_pred HHhhchhhhHHH-HHhc---ccchhhhhh-hcCCChhhhhHHHHHHHHhhcCCH---HHHHHHhh---ccchHH----HH
Confidence 999988775433 3322 234455554 455678888777777777652211 11111111 011111 11
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHh
Q 006478 466 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (643)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii 545 (643)
.. ....++.+-...|-.|+-+.... -..+..+...+++..++.++.+.+.-++-.|...+.++.
T Consensus 323 ~L---------------L~~~~~~v~~~A~~aL~nl~a~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~ 386 (510)
T 3ul1_B 323 SL---------------LTNPKTNIQKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386 (510)
T ss_dssp -C---------------TTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HH---------------hcCCCHHHHHHHHHHHHHHHcCc-HHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 10 11223445556666666665543 334556778899999999999999999999999999988
Q ss_pred cCChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHHHHHHH
Q 006478 546 SRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 591 (643)
Q Consensus 546 ~l~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~Ir 591 (643)
...+.-..+||++.+.+.|+++++.. .|.=+-..+|+-++.|-
T Consensus 387 ~~~~~~~~~~L~~~g~i~~L~~LL~~---~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 387 SGGTVEQIVYLVHCGIIEPLMNLLSA---KDTKIIQVILDAISNIF 429 (510)
T ss_dssp HHCCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHCCCHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Confidence 77777788999999999999998853 23345556666665553
No 30
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=96.06 E-value=0.029 Score=53.46 Aligned_cols=101 Identities=15% Similarity=0.277 Sum_probs=77.5
Q ss_pred CCCCCceEEEEeCCC--CCcee--ccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCcccccccCeEEEecCCCc
Q 006478 11 ANPMQRVKVYRLNDD--GKWDD--QGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEY 86 (643)
Q Consensus 11 ~~~~~RVKvY~L~~~--~~W~D--~GTG~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~e~~~ 86 (643)
+-...||.||.-++. +.|.- .|.|.|+..+ +..... +-|.+-.+...+++..|.++-.|.+.-.+.-.|.+...
T Consensus 10 ~I~s~rA~Vm~~D~~tk~~WvP~g~~~~~V~i~~-d~~rns-yRIvg~~d~kvvinc~I~~~l~Y~kasp~FHqW~d~~~ 87 (168)
T 1i2h_A 10 PIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFY-DSTRNV-YRIISLDGSKAIINSTITPNMTFTKTSQKFGQWADSRA 87 (168)
T ss_dssp CSEEEEEEEEEECTTSSCCSEESCSSCEEEEEEE-ETTTTE-EEEEEEETTEEEEEEECCTTCCEEEEETTEEEEEETTT
T ss_pred eEEEEEEEEEEECCCCCCceeecCCCCeEEEEEE-cCCCCE-EEEEEccCCEEEEecEecCCcEEeeCCcccceeecCCC
Confidence 344579999999763 37999 6666555444 333333 33334558889999999999999999999999999876
Q ss_pred cccccccccCccchhHHHHHHHHHhhc
Q 006478 87 STELALSFQEPTGCSYIWDNICNVQRN 113 (643)
Q Consensus 87 ~~dlALSFQe~~GC~~iw~~I~~vQ~~ 113 (643)
+.-++|.||.++-+...-+.+.++...
T Consensus 88 ~~v~GLnF~Se~eA~~F~~~~~~ale~ 114 (168)
T 1i2h_A 88 NTVYGLGFSSEHHLSKFAEKFQEFKEA 114 (168)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 688999999999999888887776544
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.71 E-value=0.26 Score=54.11 Aligned_cols=221 Identities=15% Similarity=0.163 Sum_probs=142.4
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHH
Q 006478 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (643)
Q Consensus 309 fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~ii 388 (643)
-++.|...++..+ +++-+.++..-|..++.- .+.. =+.+++.|.++.+-..|++++..++..|+-.|..+.
T Consensus 101 ~ip~LV~lL~~~~-~~~lq~~Aa~aL~nias~----~~e~----~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa 171 (510)
T 3ul1_B 101 LIPKFVSFLGKTD-CSPIQFESAWALTNIASG----TSEQ----TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA 171 (510)
T ss_dssp HHHHHHHHTTCTT-CHHHHHHHHHHHHHHHTS----CHHH----HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcC----CHHH----HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4555555554332 234556666555554421 1121 246789999999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhcC----CChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHH
Q 006478 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITD----FGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVI 464 (643)
Q Consensus 389 e~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d----~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl 464 (643)
.++|. .|..+.+..... .|+..+-.. ...+++..+.-++..+.-....... +. .-...++.|++-+
T Consensus 172 ~d~~~-~r~~v~~~G~i~---~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~----~~--~~~~~lp~L~~LL 241 (510)
T 3ul1_B 172 GDGSA-FRDLVIKHGAID---PLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP----LD--AVEQILPTLVRLL 241 (510)
T ss_dssp TTCHH-HHHHHHHTTCHH---HHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCC----HH--HHHHHHHHHHHHT
T ss_pred hCCHH-HHHHHHHcCChH---HHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhH----HH--HHHhHHHHHHHHH
Confidence 88887 577776654433 334434322 2234555566666666533221111 00 0123344444322
Q ss_pred HhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHH
Q 006478 465 TASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTI 544 (643)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~i 544 (643)
. ...+++....|..|+.+......+. ..+....++.+++.++.+.+.-++..|+|.+.++
T Consensus 242 ~-------------------~~~~~v~~~A~~aL~~L~~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl 301 (510)
T 3ul1_B 242 H-------------------HNDPEVLADSCWAISYLTDGPNERI-EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301 (510)
T ss_dssp T-------------------CSCHHHHHHHHHHHHHHTSSCHHHH-HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred h-------------------cCCHHHHHHHHHHHHHHhhchhhhH-HHHHhcccchhhhhhhcCCChhhhhHHHHHHHHh
Confidence 1 1234567778888888887665544 3566778999999999999999999999999998
Q ss_pred hcCChhHHHHHHHhhCChHHHHHHH
Q 006478 545 LSRHDEHLINHFVKNNLLKPIVDAF 569 (643)
Q Consensus 545 i~l~D~fy~ryiik~~lf~Pv~~~~ 569 (643)
...+|+ ....++..+.+.+++.++
T Consensus 302 ~~~~~~-~~~~i~~~g~l~~L~~LL 325 (510)
T 3ul1_B 302 VTGTDE-QTQKVIDAGALAVFPSLL 325 (510)
T ss_dssp TTSCHH-HHHHHHHTTGGGGCC-CT
T ss_pred hcCCHH-HHHHHhhccchHHHHHHh
Confidence 876655 678889999988876655
No 32
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=95.48 E-value=0.065 Score=48.78 Aligned_cols=96 Identities=19% Similarity=0.304 Sum_probs=73.8
Q ss_pred CCCceEEEEeCC-CCCceeccceEE---EEEEe----CCCc-ceeEEEEecCCCcceeEeecCCCcccccccCeEEEecC
Q 006478 13 PMQRVKVYRLND-DGKWDDQGTGHV---TVDSM----ERSE-ELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRD 83 (643)
Q Consensus 13 ~~~RVKvY~L~~-~~~W~D~GTG~~---s~~~~----e~~~-~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~e 83 (643)
..-||-||.-++ .+.|.-.|.|-+ ++.+. +... ...++.+.-.|+..+++..|.++-.|.+--.+.-.|.+
T Consensus 16 ~~~~A~Vm~~D~~~~~W~p~~~g~ls~v~v~~~~~~~d~~~~~yrI~~~~l~d~~vv~~~~l~~~l~Y~~~~p~FH~w~~ 95 (126)
T 2jp2_A 16 VRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPTFHHWKV 95 (126)
T ss_dssp EEEEEEEEEECTTSSSSEECSCCSCEEEEEECCBCTTCSSCBCEEEEEEESSSSCEEEEEEESSCCCEEEEETTEEEEEC
T ss_pred EEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCCCCCCCCEEEEEEEEcCCCeEEEEEEEeCCceEEecCCcceEEEc
Confidence 346888888854 567999998863 33333 2232 34455566668899999999999999999999999999
Q ss_pred CCccccccccccCccchhHHHHHHHHH
Q 006478 84 PEYSTELALSFQEPTGCSYIWDNICNV 110 (643)
Q Consensus 84 ~~~~~dlALSFQe~~GC~~iw~~I~~v 110 (643)
.+ +-++|+|+..+.+....+.+.+.
T Consensus 96 ~~--~~~GLnF~se~eA~~F~~~v~~a 120 (126)
T 2jp2_A 96 DN--RKFGLTFQSPADARAFDRGVRKA 120 (126)
T ss_dssp SS--SEEEEEESSHHHHHHHHHHHHHH
T ss_pred CC--EEEEEecCCHHHHHHHHHHHHHH
Confidence 86 55999999999998887776554
No 33
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.34 E-value=1.5 Score=49.38 Aligned_cols=233 Identities=15% Similarity=0.119 Sum_probs=143.7
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHH
Q 006478 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (643)
Q Consensus 309 fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~ii 388 (643)
.++.|...+.++ +..-++.++..|..+|.-..... ...|+++.+-..|.+++..++..++-+|..+.
T Consensus 225 ~l~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~-----------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~ 291 (644)
T 2z6h_A 225 GMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQE-----------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291 (644)
T ss_dssp HHHHHHTTTTCS--CHHHHHHHHHHHHHHGGGCTTCC-----------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcchhhh-----------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 566677766654 45667778888887765432211 11267788888889999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhcCCC-hhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 006478 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFG-EDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 467 (643)
Q Consensus 389 e~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~-~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~ 467 (643)
.+++.. |..+.+.. .+..|++.+....+ +.++.....+|..|.....-....+..+. =...++.|++-|...
T Consensus 292 ~~~~~~-~~~v~~~g---~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~---~~~~l~~L~~lL~~~ 364 (644)
T 2z6h_A 292 CNNYKN-KMMVCQVG---GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR---LHYGLPVVVKLLHPP 364 (644)
T ss_dssp TTCHHH-HHHHHHTT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH---HTTHHHHHHHTTSTT
T ss_pred cCCHHH-HHHHHHcC---CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHH---HccChHHHHHHhCcc
Confidence 888763 55455432 45667777765443 78888888899888542111000011111 122344444322110
Q ss_pred CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcc------------------
Q 006478 468 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRR------------------ 529 (643)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~------------------ 529 (643)
....+....|..|+-+...-..+ ..+...+++..++.++...
T Consensus 365 ------------------~~~~v~~~a~~~L~nLa~~~~~~--~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~ 424 (644)
T 2z6h_A 365 ------------------SHWPLIKATVGLIRNLALCPANH--APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 424 (644)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTTSGGGH--HHHHHTTHHHHHHHHHHHHHHHHTTC----------C
T ss_pred ------------------CchHHHHHHHHHHHHHccCHHHH--HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhc
Confidence 01234444555565555433333 5667778888888877642
Q ss_pred ----cchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHH
Q 006478 530 ----EKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLE 585 (643)
Q Consensus 530 ----~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Le 585 (643)
...++.+|++.++++.. +.-....+.+.+.+.|+++++.. ...|+...|+--
T Consensus 425 ~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~--~~~~v~~~a~~a 480 (644)
T 2z6h_A 425 EGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYS--PIENIQRVAAGV 480 (644)
T ss_dssp CSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcC--CCHHHHHHHHHH
Confidence 23566789999998763 33345566699999999999853 234566655543
No 34
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.28 E-value=3.2 Score=44.45 Aligned_cols=233 Identities=13% Similarity=0.104 Sum_probs=151.8
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHH
Q 006478 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (643)
Q Consensus 308 ~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~i 387 (643)
..++.|...+++++ ++-+..++..|..+|.-..+ .| +.+++.|.++.+-..|.+++..++..++..|..+
T Consensus 101 g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~----~~----~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 101 GGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEG----AK----MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp THHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTT----HH----HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcc----hH----HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 46778888887654 56788888888888765321 12 2456789999999999999999999999999888
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 006478 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 467 (643)
Q Consensus 388 ie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~ 467 (643)
...++.. +..+.+.+ -+..|++.|-...+...+.....+|..|-..+. .++.+.+ ...+ .+|...
T Consensus 171 a~~~~~~-~~~i~~~~---~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~---~g~~----~~L~~l 235 (529)
T 1jdh_A 171 AYGNQES-KLIILASG---GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIVE---AGGM----QALGLH 235 (529)
T ss_dssp HTTCHHH-HHHHHHTT---HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT----HHHHHHH---TTHH----HHHHTT
T ss_pred HhCCHHH-HHHHHHCC---CHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc----cHHHHHH---CCCH----HHHHHH
Confidence 8777763 44444432 245566666555566666677778887764221 1222221 1223 333332
Q ss_pred CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcC
Q 006478 468 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (643)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l 547 (643)
.. ...+.+..+.+..|+.+....+.. ....+++..++.++++.+.-++..|.+.+.++...
T Consensus 236 l~---------------~~~~~~~~~a~~~L~~l~~~~~~~----~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 236 LT---------------DPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp TT---------------SSCHHHHHHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred Hh---------------CCChHHHHHHHHHHHHHhcCChhh----HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 10 012344555666666666554322 12346788888999988889999999999998554
Q ss_pred ChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHH
Q 006478 548 HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLE 585 (643)
Q Consensus 548 ~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Le 585 (643)
+ .-....+++.+.+.++++++...++...+...|+--
T Consensus 297 ~-~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~ 333 (529)
T 1jdh_A 297 N-YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333 (529)
T ss_dssp C-HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C-HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence 3 346677889999999999998765544444444433
No 35
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=95.04 E-value=0.075 Score=47.80 Aligned_cols=97 Identities=23% Similarity=0.345 Sum_probs=73.4
Q ss_pred CCCceEEEEeCC-CCCceeccceEEE---EEEe----CCCc-ceeEEEEecCCCcceeEeecCCCcccccccCeEEEecC
Q 006478 13 PMQRVKVYRLND-DGKWDDQGTGHVT---VDSM----ERSE-ELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRD 83 (643)
Q Consensus 13 ~~~RVKvY~L~~-~~~W~D~GTG~~s---~~~~----e~~~-~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~e 83 (643)
..-|+.||.-++ .+.|.-.|.|-++ +.+. +... ...++.+.-.+...++++.|.++-.|.+.-.+.-.|.+
T Consensus 7 ~~~~A~V~~~d~~~~~W~p~~~g~ls~v~i~~~~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w~~ 86 (118)
T 1xod_A 7 ARVRAVVMTRDDSSGGWLQLGGGGLSSVTVSKTLQPGDSGGTEFLVHGERLRDKTVVLECVLRRDLVYNKVTPTFHHWRI 86 (118)
T ss_dssp EEEEEEEEEECSSSSCEEEGGGCCCEEEEEECC---------CCEEEEEETTTCCEEEEEECCTTCEEEEEETTEEEEEE
T ss_pred EEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCcCCCCCCEEEEEEEECCCCeEEEEEEEeCCcEEEecCCcceEEEe
Confidence 445888888854 6789999988643 2232 1222 34455566568899999999999999999999999999
Q ss_pred CCccccccccccCccchhHHHHHHHHHh
Q 006478 84 PEYSTELALSFQEPTGCSYIWDNICNVQ 111 (643)
Q Consensus 84 ~~~~~dlALSFQe~~GC~~iw~~I~~vQ 111 (643)
.+ +=++|.|+..+.+....+.+.+.-
T Consensus 87 ~~--~~~GL~F~se~eA~~F~~~v~~al 112 (118)
T 1xod_A 87 GD--KKFGLTFQSPADARAFDRGIRRAI 112 (118)
T ss_dssp TT--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CC--EEEEEecCCHHHHHHHHHHHHHHH
Confidence 75 569999999999999887776654
No 36
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.03 E-value=5.3 Score=44.75 Aligned_cols=234 Identities=14% Similarity=0.096 Sum_probs=154.5
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHH
Q 006478 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (643)
Q Consensus 308 ~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~i 387 (643)
..++.|...+.++ +.+-|..++.-|..+|.-.. . .-+.+++.|.++.+-..|.+++..++..+++.|..+
T Consensus 98 g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~----~----~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 98 GGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQE----G----AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167 (644)
T ss_dssp THHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHST----T----HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhCcc----h----hHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence 5688888888775 35678888888887776431 1 123566899999999999999988889999999888
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 006478 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 467 (643)
Q Consensus 388 ie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~ 467 (643)
...++.. |..+.+.. -+..|++.+-......++.....+|+.|-.... .++.+++ ...++. |...
T Consensus 168 a~~~~~~-~~~i~~~g---~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~----~~~~l~~---~g~l~~----L~~l 232 (644)
T 2z6h_A 168 AYGNQES-KLIILASG---GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIVE---AGGMQA----LGLH 232 (644)
T ss_dssp HTTCHHH-HHHHHHTT---HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT----HHHHHHH---TTHHHH----HHTT
T ss_pred HhcCcHH-HHHHHHcC---ChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc----cHHHHHH---CCCHHH----HHHH
Confidence 8766663 44444432 255667766555556667777888888864221 2332222 123333 3332
Q ss_pred CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcC
Q 006478 468 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (643)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l 547 (643)
.. .....+....+..|.-+.+..+. ......++..+++++++.+.-++..|...+.++-.-
T Consensus 233 l~---------------~~~~~~~~~a~~~L~nL~~~~~~----~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 233 LT---------------DPSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp TT---------------CSCHHHHHHHHHHHHHHGGGCTT----CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred Hh---------------cCCHHHHHHHHHHHHHHhhcchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 10 01244556666777666655332 122346788888999988888999999999988654
Q ss_pred ChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHH
Q 006478 548 HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLEL 586 (643)
Q Consensus 548 ~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lel 586 (643)
+.-..+.+++.+.+.+++.++...+++..+...|+.-+
T Consensus 294 -~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 294 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 34467788899999999999987665555555444433
No 37
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=94.71 E-value=5.4 Score=46.10 Aligned_cols=210 Identities=14% Similarity=0.169 Sum_probs=111.8
Q ss_pred HHhhcCHHHHHHHHHHhCC-CCCcHHhHHHHHHHHHHHHHh-hhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHH
Q 006478 301 SLLKDDSTFIQELFARLRS-PTTLEESKKNLVHFLHEFCGL-SKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVL 378 (643)
Q Consensus 301 ~~Lq~d~~fL~eLf~~l~~-~~~~~~~r~d~v~fL~e~c~~-ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~ 378 (643)
+.++.+++|..-|...+.+ .+.+..-|.-+...|+..+.- -+.+.+..|..+-..+++ +|.++++.+|.
T Consensus 38 ~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~---------~l~~~~~~vr~ 108 (852)
T 4fdd_A 38 EQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN---------NIGDSSPLIRA 108 (852)
T ss_dssp HHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHT---------TTTCSSHHHHH
T ss_pred HHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH---------HHcCCCHHHHH
Confidence 3455677777666666654 345556677666677766531 123444444433333322 13455556666
Q ss_pred hhHHHHHHHHhcC-----hHHHHHHH--Hh---------------------------cCCcchHHHHHHHH---hcCCCh
Q 006478 379 TGTDILILFLNQD-----PNLLRSYV--VR---------------------------QEGIPLLGLLVKGM---ITDFGE 421 (643)
Q Consensus 379 ~~tdIl~~iie~d-----p~lvR~~i--~~---------------------------q~~~~Ll~~Li~~l---l~d~~~ 421 (643)
.+++++..++.++ |.++-..+ .+ +.-...+..++..+ +.+.++
T Consensus 109 ~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~ 188 (852)
T 4fdd_A 109 TVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP 188 (852)
T ss_dssp HHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCH
Confidence 6666665555544 22211110 00 00001123333333 346777
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHH
Q 006478 422 DMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFC 501 (643)
Q Consensus 422 gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fc 501 (643)
+++...+.+|..++.... . . +...++.++.++..... ...+++-...|+.|.-.
T Consensus 189 ~vR~~A~~aL~~~~~~~~--~----~-----~~~~~~~~l~~l~~~~~---------------d~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 189 KIRSHAVACVNQFIISRT--Q----A-----LMLHIDSFIENLFALAG---------------DEEPEVRKNVCRALVML 242 (852)
T ss_dssp HHHHHHHHHHHTTTTTTC--H----H-----HHTSHHHHHHHHHHHHT---------------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc--H----H-----HHHHHHHHHHHHHHHcC---------------CCCHHHHHHHHHHHHHH
Confidence 888777777776664321 0 0 11122333344333110 01234555667777777
Q ss_pred HhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcC
Q 006478 502 VLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (643)
Q Consensus 502 v~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l 547 (643)
+..++..++.++ +.++.-++.++...+.-++..|+.|+.++...
T Consensus 243 ~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 243 LEVRMDRLLPHM--HNIVEYMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHHCHHHHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHhCHHHHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 777766666553 24777777788878888999999999987654
No 38
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=94.62 E-value=0.15 Score=47.85 Aligned_cols=95 Identities=12% Similarity=0.263 Sum_probs=78.4
Q ss_pred eEEEEeCCCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCcccccccCeEEEecCCCccccccccccC
Q 006478 17 VKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQE 96 (643)
Q Consensus 17 VKvY~L~~~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~e~~~~~dlALSFQe 96 (643)
|.||.-..++.|.-.|+|-+.....-.....+|-+.+-.++..+.+..|-.+-.|++......+|... ++-++|+|.+
T Consensus 48 aqLy~a~~~~~W~~~~~Gal~~VkD~~~rsyf~RlvDl~~~~viweqELY~~f~Y~~~r~~FHtFe~d--~c~~GLnFad 125 (152)
T 1mke_A 48 VQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGD--TCQVALNFAN 125 (152)
T ss_dssp EEEEEEETTTEEEEEEEEEEEEEEETTTTEEEEEEECSSSCSEEEEEECCSSCCCBCSSSSEEEEECS--SSEEEEEESS
T ss_pred EEEEEECCCCceEecCceEEEEEEECCCCeEEEEEEEccCCeEEEEeecccceeeccCCCeEEEEecC--CcEEEEeeCC
Confidence 78999866679999999987665433345577888888888889999999999999999999999764 5779999999
Q ss_pred ccchhHHHHHHHHHhhc
Q 006478 97 PTGCSYIWDNICNVQRN 113 (643)
Q Consensus 97 ~~GC~~iw~~I~~vQ~~ 113 (643)
.+-+....+.+.+-..+
T Consensus 126 e~EA~~F~~~V~~~l~~ 142 (152)
T 1mke_A 126 EEEAKKFRKAVTDLLGR 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998888776443
No 39
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=94.59 E-value=0.15 Score=48.55 Aligned_cols=95 Identities=12% Similarity=0.263 Sum_probs=78.5
Q ss_pred eEEEEeCCCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCcccccccCeEEEecCCCccccccccccC
Q 006478 17 VKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQE 96 (643)
Q Consensus 17 VKvY~L~~~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~e~~~~~dlALSFQe 96 (643)
|.||.-..++.|.-.|+|-+.....-.....+|-+.+-.++..+.+..|-.+-.|++......+|.+. ++-++|+|.+
T Consensus 65 aqLy~a~~~~~W~~~~~Gal~~vkD~~~rsyf~RlvDl~~~~vvweqELY~~f~Y~~~r~~FHtFe~d--~c~~GLnFad 142 (169)
T 2ifs_A 65 VQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGD--TCQVALNFAN 142 (169)
T ss_dssp EEEEEEETTTEEEEEEEEEEEEEEETTTTEEEEEEEETTTCCCCEEEECCSSCCCBCCCSSEEEEECS--SSEEEEECSC
T ss_pred EEEEEECCCCeeEecCceEEEEEEECCCCeEEEEEEEccCCeEEEEeecccceeeccCCCeEEEeecC--CcEEEEeeCC
Confidence 78999866679999999987665433345577888888888899999999999999999999999764 5779999999
Q ss_pred ccchhHHHHHHHHHhhc
Q 006478 97 PTGCSYIWDNICNVQRN 113 (643)
Q Consensus 97 ~~GC~~iw~~I~~vQ~~ 113 (643)
.+-+....+.+.+-..+
T Consensus 143 e~EA~~F~~~V~~~l~~ 159 (169)
T 2ifs_A 143 EEEAKKFRKAVTDLLGR 159 (169)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998888776543
No 40
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=94.29 E-value=1.8 Score=46.35 Aligned_cols=185 Identities=11% Similarity=0.119 Sum_probs=125.5
Q ss_pred HHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 006478 356 LMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 356 L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LL 435 (643)
.+..|.++.+-..|+++|+.+|..|+..|..+..+++. |..++..+ -.+..|++.|-.+.++.++.....+|+.|-
T Consensus 13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~--~~~~~~~~--~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls 88 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS--RHAIMRSP--QMVSAIVRTMQNTNDVETARCTAGTLHNLS 88 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHH--HHHHHTCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCcc--HHHHHhCc--chHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999887764 33333321 245566777766668888888889998874
Q ss_pred CCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhh
Q 006478 436 DSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLL 515 (643)
Q Consensus 436 Dp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~ 515 (643)
..+. .+..+.+ ...++.|++-|.+ ..+.+....+..|..+...++. .+..+..
T Consensus 89 ~~~~----~~~~i~~---~g~i~~L~~lL~~-------------------~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~ 141 (529)
T 1jdh_A 89 HHRE----GLLAIFK---SGGIPALVKMLGS-------------------PVDSVLFYAITTLHNLLLHQEG-AKMAVRL 141 (529)
T ss_dssp TSHH----HHHHHHH---TTHHHHHHHHTTC-------------------SCHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred cCch----hHHHHHH---cCCHHHHHHHHcC-------------------CCHHHHHHHHHHHHHHhcCCcc-hHHHHHH
Confidence 3211 1222221 2456666554321 1234556667777776665443 3556777
Q ss_pred ccHHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHHhHh
Q 006478 516 NNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVAN 572 (643)
Q Consensus 516 ~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~n 572 (643)
.+.+..++.++.+.+.-.+-.|.+.++++.. .++-....+++.+.+.+++.++...
T Consensus 142 ~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~-~~~~~~~~i~~~~~i~~L~~ll~~~ 197 (529)
T 1jdh_A 142 AGGLQKMVALLNKTNVKFLAITTDCLQILAY-GNQESKLIILASGGPQALVNIMRTY 197 (529)
T ss_dssp HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHCCCHHHHHHHHHhC
Confidence 8899999999988777777788888887654 4444677888889999999988653
No 41
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=94.19 E-value=6.8 Score=45.24 Aligned_cols=185 Identities=10% Similarity=0.132 Sum_probs=101.5
Q ss_pred CcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCC
Q 006478 360 GIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT 439 (643)
Q Consensus 360 gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~ 439 (643)
++++.+-..+.+++..+|..+++.|..+++..|..++.++- .++..+++. +.+.+++++.+..+.+..+.+...
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-----~l~~~l~~~-~~~~~~~vr~~a~e~l~~l~~~~~ 288 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-----NIVEYMLQR-TQDQDENVALEACEFWLTLAEQPI 288 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-----HHHHHHHHH-HTCSSHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-----HHHHHHHHH-ccCCcHHHHHHHHHHHHHHhcchh
Confidence 34555556677888899999999999999999887776542 255555554 457789999999999999876542
Q ss_pred CCchhhhHHHHHHHHhhHHHHHHHHH---------hcCCCcccccccC-CCCcccCCcHHHHHHHHHHHHHHHhhcCchh
Q 006478 440 LSGAQRDTIIEIFYEKHLGQLIDVIT---------ASCPQEGIAQSAS-SGGRVESTKPEILSNICELLCFCVLHHPYRI 509 (643)
Q Consensus 440 ~~~~e~d~fl~~FY~~~~~~L~~pl~---------~~~~~~~~~~~~~-~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~ 509 (643)
. + .++.-+..+.++.|+.-+. ...+.+....+.. ....++......+..+.+. ...
T Consensus 289 ~----~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~----~~~----- 354 (852)
T 4fdd_A 289 C----K-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANV----YRD----- 354 (852)
T ss_dssp H----H-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHH----HGG-----
T ss_pred H----H-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHh----ccH-----
Confidence 1 1 1232233333444433321 0001010000000 1111222222233333332 211
Q ss_pred hhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHH
Q 006478 510 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAF 569 (643)
Q Consensus 510 k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~ 569 (643)
.++ ..++..+..++.+.+-..+-+|++.+.++..--.+.+..|+ ..++.+++..+
T Consensus 355 --~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~~l~~~l 409 (852)
T 4fdd_A 355 --ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCL 409 (852)
T ss_dssp --GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHHHHHHHT
T ss_pred --HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHc
Confidence 111 24566666777777888899999999998866555443322 23444444443
No 42
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=93.49 E-value=1.2 Score=44.76 Aligned_cols=152 Identities=14% Similarity=0.131 Sum_probs=101.9
Q ss_pred hcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 006478 358 NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS 437 (643)
Q Consensus 358 ~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp 437 (643)
..+.+.++...|.+.|+.++..+.=+|=-++..-|...|.-.++. ++.-+++.+ .+.|.++..-...+|++||+.
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~----~Ld~iI~ll-k~~dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER----HLDVFINAL-SQENEKVTIKALRALGYLVKD 105 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH----HHHHHHHTC-CSTTHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH----HHHHHHHHH-hccchhHHHHHHHHHHHHHcC
Confidence 344677888888899998888887777666666555555544432 566666655 788999999999999999998
Q ss_pred CCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhcc
Q 006478 438 YTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNN 517 (643)
Q Consensus 438 ~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~ 517 (643)
.+++.. =|.+.++.|.+-+.+ ..+-+..++.|.+.=. |---....
T Consensus 106 vpL~~~--------~y~Kl~~aL~dlik~-------------------~~~il~~eaae~Lgkl--------kv~~~~~~ 150 (265)
T 3b2a_A 106 VPMGSK--------TFLKAAKTLVSLLES-------------------PDDMMRIETIDVLSKL--------QPLEDSKL 150 (265)
T ss_dssp CCBCHH--------HHHHHHHHHHHHTTS-------------------CCHHHHHHHHHHHHHC--------CBSCCCHH
T ss_pred CCCCHH--------HHHHHHHHHHHHhcC-------------------CCchHHHHHHHHhCcC--------CcccchHH
Confidence 887532 144444444433221 1222344555555543 11122245
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHhcCCh
Q 006478 518 VVDKVLLLTRRREKYLVVAAVRFVRTILSRHD 549 (643)
Q Consensus 518 l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D 549 (643)
+...+.+|++|++..++.+|+|++..+-+..+
T Consensus 151 V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 151 VRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 66778889999999999999999999987543
No 43
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=93.22 E-value=8.5 Score=45.08 Aligned_cols=235 Identities=14% Similarity=0.090 Sum_probs=146.1
Q ss_pred cCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhh-------------hcc-------ChhhHHHHH----HHHHhcC
Q 006478 305 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-------------KSL-------QMVQQLRLF----RDLMNEG 360 (643)
Q Consensus 305 ~d~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~a-------------k~l-------q~~~r~~~f----~~L~~~g 360 (643)
.+..+++.|+..+++++. .-...+..-|..++.-. +.. .+-+..++- +.+++.|
T Consensus 418 ~d~g~Ip~LV~LL~s~d~--~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaG 495 (810)
T 3now_A 418 EDKASIHALMDLARGGNQ--SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEG 495 (810)
T ss_dssp HCHHHHHHHHHHHHTTCG--GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTT
T ss_pred HccchHHHHHHHhCCCCh--HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCc
Confidence 356799999999986543 34556665555555421 100 111222233 5788999
Q ss_pred cHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCC
Q 006478 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTL 440 (643)
Q Consensus 361 ll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~ 440 (643)
.++.+-..|.++++.++..|+-.|..+.. |+. .|..++++...+ .|+..+ .+.++..+.+...||-.|.-..+
T Consensus 496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~-~r~~Vv~~Gaip---~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~- 568 (810)
T 3now_A 496 ITTALCALAKTESHNSQELIARVLNAVCG-LKE-LRGKVVQEGGVK---ALLRMA-LEGTEKGKRHATQALARIGITIN- 568 (810)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHH-HHHHHHHTTHHH---HHHHHH-HSSCHHHHHHHHHHHHHHHHHSC-
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHH-HHHHHHHCCCHH---HHHHHH-ccCCHHHHHHHHHHHHHHhcCCC-
Confidence 99999999999999999999999999984 565 688888765433 334444 34566678888888877752211
Q ss_pred CchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHH
Q 006478 441 SGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVD 520 (643)
Q Consensus 441 ~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~ 520 (643)
++ ..|+.......+.||........ ........+--|+.+.... -..+..++....+.
T Consensus 569 --p~-----~~~~~~~~~~aIppLv~LL~~~~--------------~~l~~~eAl~AL~NLa~~~-d~~~~~Ii~aG~l~ 626 (810)
T 3now_A 569 --PE-----VSFSGQRSLDVIRPLLNLLQQDC--------------TALENFESLMALTNLASMN-ESVRQRIIKEQGVS 626 (810)
T ss_dssp --HH-----HHTTTHHHHHTHHHHHHTTSTTS--------------CHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHH
T ss_pred --hh-----hhhcchhhhcHHHHHHHHhCCCC--------------cHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHH
Confidence 11 01211111123455554321100 0000112344455555432 24455688889999
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHHhH
Q 006478 521 KVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVA 571 (643)
Q Consensus 521 kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~ 571 (643)
++..|+.+.+.-++-+|++++.+++.- ++...+++...+.+.+++.++..
T Consensus 627 ~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s 676 (810)
T 3now_A 627 KIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCED 676 (810)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcC
Confidence 999999988889999999999998864 44444444236888888877643
No 44
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=93.17 E-value=0.64 Score=53.23 Aligned_cols=191 Identities=14% Similarity=0.162 Sum_probs=118.9
Q ss_pred HHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHH
Q 006478 354 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS 433 (643)
Q Consensus 354 ~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~ 433 (643)
.++.+..++++++. |+++|+..|..|+-.|..+++ ||+..+- +.++ ..+..++..+++|.+..++.+...+|+.
T Consensus 29 ~~~~~~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~-~~~~~~l-~~~~---~~v~~ll~~lL~D~~~~Vr~~A~gaLrn 102 (684)
T 4gmo_A 29 AKLREDKILPVLKD-LKSPDAKSRTTAAGAIANIVQ-DAKCRKL-LLRE---QVVHIVLTETLTDNNIDSRAAGWEILKV 102 (684)
T ss_dssp HHHHHHTTHHHHHH-HSSSCCSHHHHHHHHHHHHTT-SHHHHHH-HHHT---THHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHH-cCCCCHHHHHHHHHHHHHHHc-CcHHHHH-HHHc---CCHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 35667789999987 899999999999999999996 8886443 4442 2455677888999999999999999999
Q ss_pred hcCCCCCCchhhhHHHHHHHHhh-HHHHHHHHHhcCCCcccccccCCCCcccCCc----HHHHHHHHHHHHHHHhhcCch
Q 006478 434 LLDSYTLSGAQRDTIIEIFYEKH-LGQLIDVITASCPQEGIAQSASSGGRVESTK----PEILSNICELLCFCVLHHPYR 508 (643)
Q Consensus 434 LLDp~~~~~~e~d~fl~~FY~~~-~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~----~~ll~~l~eLL~fcv~~H~~r 508 (643)
|---+ ..++..+.|.+. ++-|..-|-.... ................ ..+..+++-+|.. .-+++-.
T Consensus 103 L~~~~------g~d~~~~l~~~~il~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~-L~e~s~~ 173 (684)
T 4gmo_A 103 LAQEE------EADFCVHLYRLDVLTAIEHAAKAVLE--TLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGL-LALARDE 173 (684)
T ss_dssp HHHHS------CHHHHHHHHHTTHHHHHHHHHHHHHH--HHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHH-HHHHCHH
T ss_pred HHhhc------CchHHHHHHHcChHHHHHHHHHhhHH--HHhhhccccccccHHHHHHHHHHHHHHHHHHHH-HHhCCHH
Confidence 85322 224555556553 3333332211000 0000000000000001 1123445555544 3355666
Q ss_pred hhhHHhhccHHHHHHHHhhcccc---hhhHHHHHHHHHHhcCChhHHHHHHHhhC
Q 006478 509 IKCNFLLNNVVDKVLLLTRRREK---YLVVAAVRFVRTILSRHDEHLINHFVKNN 560 (643)
Q Consensus 509 ~k~~il~~~l~~kv~~Ll~~~~k---~L~LaAlRf~R~ii~l~D~fy~ryiik~~ 560 (643)
....+..++.+..++.++...++ -++.+|++|+.++..-++++. +.+..++
T Consensus 174 ~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~-~~i~~~~ 227 (684)
T 4gmo_A 174 IHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVG-QAITDDQ 227 (684)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHH-HHHHTCC
T ss_pred HHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHH-HHHHhcc
Confidence 66677778888887776644443 488999999999988888754 4555544
No 45
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=93.02 E-value=3.8 Score=42.69 Aligned_cols=230 Identities=12% Similarity=0.114 Sum_probs=125.6
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhh-ccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHH
Q 006478 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK-SLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 386 (643)
Q Consensus 308 ~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak-~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~ 386 (643)
.+++-+...+.+++.+.+-|..++.-+..+..+.+ +.... .+..+ +++++...+.+++..+|..+++++..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~----~~~~~----l~~~l~~~~~~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE----SERHF----IMQVVCEATQCPDTRVRVAALQNLVK 243 (462)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH----HHHHH----HHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHH----HHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 35566666677664456777878777766554332 11111 11111 46666667788899999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCC-------------CCc-hhhhHHHHHH
Q 006478 387 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT-------------LSG-AQRDTIIEIF 452 (643)
Q Consensus 387 iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~-------------~~~-~e~d~fl~~F 452 (643)
+++..|..++.++.+ .++..++..+ .+.++.++.+..+.+..+.+... ... .....++.-+
T Consensus 244 l~~~~~~~~~~~~~~----~l~~~~~~~~-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (462)
T 1ibr_B 244 IMSLYYQYMETYMGP----ALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (462)
T ss_dssp HHHHCGGGCTTTTTT----THHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH
Confidence 999998776654321 4565555443 67888999898888877765320 000 0011233333
Q ss_pred HHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccch
Q 006478 453 YEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKY 532 (643)
Q Consensus 453 Y~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~ 532 (643)
....++.|++-+... ++. .+ .....++ ...++.|..++..-+ + .+ ...++..+...+...+-.
T Consensus 319 ~~~l~p~l~~~l~~~--d~d--~~-~~~~~~r-------~~a~~~L~~l~~~~~---~-~~-~~~~~~~l~~~l~~~~~~ 381 (462)
T 1ibr_B 319 LQYLVPILTQTLTKQ--DEN--DD-DDDWNPC-------KAAGVCLMLLATCCE---D-DI-VPHVLPFIKEHIKNPDWR 381 (462)
T ss_dssp HHHHHHHHHHHTTCC--CSS--CC-TTCCSHH-------HHHHHHHHHHHHHTT---T-TH-HHHHHHHHHHHTTCSSHH
T ss_pred hhhccHHHHHHHHhc--ccc--cc-cccchHH-------HHHHHHHHHHHHhcc---H-HH-HHHHHHHHHHHhcCCChH
Confidence 344445444433221 000 00 0111122 122333333333222 1 11 134566666777777888
Q ss_pred hhHHHHHHHHHHhcCCh-hHHHHHHHhhCChHHHHHHH
Q 006478 533 LVVAAVRFVRTILSRHD-EHLINHFVKNNLLKPIVDAF 569 (643)
Q Consensus 533 L~LaAlRf~R~ii~l~D-~fy~ryiik~~lf~Pv~~~~ 569 (643)
.+-+|+.++.++..-.+ +.+..++ ..++.+++..+
T Consensus 382 ~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l 417 (462)
T 1ibr_B 382 YRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELM 417 (462)
T ss_dssp HHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGG
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHh
Confidence 89999999999875333 2222222 34554555544
No 46
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=93.01 E-value=4.6 Score=46.82 Aligned_cols=213 Identities=12% Similarity=0.148 Sum_probs=131.8
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHh
Q 006478 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (643)
Q Consensus 310 L~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie 389 (643)
.+.+...+.+++ .+.|+.++.+++- ..+ ..+..|.++.+...|.+++..+|..|+..|..+..
T Consensus 117 i~~lv~~L~~~~--~~~r~~a~~~l~~----------~~~-----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~ 179 (780)
T 2z6g_A 117 HPTNVQRLAEPS--QMLKHAVVNLINY----------QDD-----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK 179 (780)
T ss_dssp ---------CCS--CHHHHHHHHHHHH----------HHH-----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCcc--HHHHHHHHHHHHh----------hhH-----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC
Confidence 556666676664 3556666655541 122 23347888988889999999999999999999888
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCC
Q 006478 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCP 469 (643)
Q Consensus 390 ~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~ 469 (643)
+++. +..+.. ....+..|++.|-.+.++.++...+.+|+.|-... ..+..+.+ ...++.|++-|.+
T Consensus 180 ~~~~--~~~i~~--~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~----~~~~~i~~---~g~I~~Lv~lL~~--- 245 (780)
T 2z6g_A 180 KEAS--RHAIMR--SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR----EGLLAIFK---SGGIPALVNMLGS--- 245 (780)
T ss_dssp SHHH--HHHHTT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH----HHHHHHHH---TTHHHHHHHHTTC---
T ss_pred CChh--HHHHHh--ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc----hhHHHHHH---cCCHHHHHHHHcC---
Confidence 7654 222221 12356777888777778899988888988864321 11222221 1345666554321
Q ss_pred CcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcCCh
Q 006478 470 QEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHD 549 (643)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D 549 (643)
..+.+....+..|..+...+. ..+..+...+++..++.++.+.+.-++-.|+.+++.+. ..+
T Consensus 246 ----------------~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La-~~~ 307 (780)
T 2z6g_A 246 ----------------PVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA-YGN 307 (780)
T ss_dssp ----------------SCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH-TTC
T ss_pred ----------------CCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh-cCC
Confidence 123444555666666665543 35566777889999999998777666667777887544 444
Q ss_pred hHHHHHHHhhCChHHHHHHHhH
Q 006478 550 EHLINHFVKNNLLKPIVDAFVA 571 (643)
Q Consensus 550 ~fy~ryiik~~lf~Pv~~~~~~ 571 (643)
+-....+++.+...+++.++..
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~~ 329 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMRT 329 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHTT
T ss_pred hHHHHHHHHcCCHHHHHHHHhc
Confidence 4456677888889988887753
No 47
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=92.90 E-value=17 Score=42.02 Aligned_cols=252 Identities=10% Similarity=0.071 Sum_probs=146.8
Q ss_pred cCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHH
Q 006478 305 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDIL 384 (643)
Q Consensus 305 ~d~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl 384 (643)
+.+..++.|...+++. .+.+-|+.++..|..++. . ...+ ..+.+.|.++.+-..|++++..++..|+..|
T Consensus 189 ~~~~~i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~---~--~~~~----~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL 258 (780)
T 2z6g_A 189 RSPQMVSAIVRTMQNT-NDVETARCTSGTLHNLSH---H--REGL----LAIFKSGGIPALVNMLGSPVDSVLFHAITTL 258 (780)
T ss_dssp TCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHT---S--HHHH----HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hccChHHHHHHHHcCC-CCHHHHHHHHHHHHHHhC---C--chhH----HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4457788888888654 256778888888887443 2 1222 3456779999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHH
Q 006478 385 ILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVI 464 (643)
Q Consensus 385 ~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl 464 (643)
..+...++.. |..+.+.. .+..|++.|- +.+..++....++|..|--.. ...+..+.. ...++.|++-+
T Consensus 259 ~nLa~~~~~~-~~~v~~~g---~v~~Lv~lL~-~~~~~v~~~a~~aL~~La~~~---~e~~~~i~~---~~~i~~Lv~lL 327 (780)
T 2z6g_A 259 HNLLLHQEGA-KMAVRLAG---GLQKMVALLN-KTNVKFLAITTDCLQILAYGN---QESKLIILA---SGGPQALVNIM 327 (780)
T ss_dssp HHHHHHSTTH-HHHHHHTT---HHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTC---HHHHHHHHT---TTHHHHHHHHH
T ss_pred HHHhCCChhh-HHHHHHcC---CHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCC---hHHHHHHHH---cCCHHHHHHHH
Confidence 9998887663 44343322 3556666553 456677777777887765211 011111111 12334444432
Q ss_pred HhcCCCcc----------------ccccc-CCC------CcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHH
Q 006478 465 TASCPQEG----------------IAQSA-SSG------GRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDK 521 (643)
Q Consensus 465 ~~~~~~~~----------------~~~~~-~~~------~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~k 521 (643)
....+... ..... ..+ .........+....+..|.-++..... ......++..
T Consensus 328 ~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~----~~~~~~~i~~ 403 (780)
T 2z6g_A 328 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGT 403 (780)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT----CSCCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh----hhhhhhHHHH
Confidence 21100000 00000 000 000111222333333333333332211 1123457788
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHH
Q 006478 522 VLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSA 582 (643)
Q Consensus 522 v~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa 582 (643)
++.++++.+.-++..|++.+.++..-.++ ..+.+++.+.+.++++++...++.......|
T Consensus 404 Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~A 463 (780)
T 2z6g_A 404 LVQLLGSDDINVVTCAAGILSNLTCNNYK-NKMMVCQVGGIEALVRTVLRAGDREDITEPA 463 (780)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSCHH-HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHHHHccCCHHHHHHHH
Confidence 88889888888999999999998665443 5677888999999999998765543333333
No 48
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.83 E-value=4.4 Score=39.21 Aligned_cols=194 Identities=9% Similarity=0.146 Sum_probs=123.7
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHc-CCChhhHHhhHHHHHHHHhc
Q 006478 312 ELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQ-SQDKKLVLTGTDILILFLNQ 390 (643)
Q Consensus 312 eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~-~~d~~ir~~~tdIl~~iie~ 390 (643)
.++..+.+ .+-..|+.++.-|..++.-...+.... |. .+++++...+. +.+..+|..|+..+..+...
T Consensus 19 ~l~~~l~s--~~w~~R~~a~~~L~~l~~~~~~~~~~~----~~-----~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 19 DFYDKLEE--KKWTLRKESLEVLEKLLTDHPKLENGE----YG-----ALVSALKKVITKDSNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp THHHHHTC--SSHHHHHHHHHHHHHHHHHCSSBCCCC----CH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcc--CCHHHHHHHHHHHHHHHccCCCCCCCC----HH-----HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 35555554 345788999988888877532222111 11 24566777884 99999999999999888743
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCC
Q 006478 391 DPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQ 470 (643)
Q Consensus 391 dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~ 470 (643)
=...+..|+ ..++..|++. +.|+++.++....++|..+....+ ++..++.+..-+.+
T Consensus 88 l~~~~~~~~-----~~ilp~ll~~-l~d~~~~vr~~a~~aL~~~~~~~~-------------~~~ll~~l~~~l~~---- 144 (242)
T 2qk2_A 88 LAKRFSNYA-----SACVPSLLEK-FKEKKPNVVTALREAIDAIYASTS-------------LEAQQESIVESLSN---- 144 (242)
T ss_dssp HGGGGHHHH-----HHHHHHHHHG-GGCCCHHHHHHHHHHHHHHHTTSC-------------HHHHHHHHHHHTTC----
T ss_pred HhhhHHHHH-----HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHcC----
Confidence 222222222 2355555554 367888999999999999976422 23344444332211
Q ss_pred cccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCch--hhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHh-cC
Q 006478 471 EGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYR--IKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL-SR 547 (643)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r--~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii-~l 547 (643)
..+.+-...+.+|.-|+..|.-. .+.++ ..++..+..++..++.-++-+|..++-.+. ..
T Consensus 145 ---------------~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 145 ---------------KNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp ---------------SCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 13445567788888888888532 23333 467888888888888889999999998854 33
Q ss_pred ChhHHHHHH
Q 006478 548 HDEHLINHF 556 (643)
Q Consensus 548 ~D~fy~ryi 556 (643)
.++.+..|+
T Consensus 208 g~~~~~~~l 216 (242)
T 2qk2_A 208 GDKAVTPLL 216 (242)
T ss_dssp CHHHHGGGG
T ss_pred CHHHHHHHH
Confidence 455555555
No 49
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=92.13 E-value=12 Score=38.70 Aligned_cols=210 Identities=7% Similarity=0.058 Sum_probs=118.6
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHh------------hhccChhhHHHHHHHHHh----------------
Q 006478 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGL------------SKSLQMVQQLRLFRDLMN---------------- 358 (643)
Q Consensus 307 ~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~------------ak~lq~~~r~~~f~~L~~---------------- 358 (643)
+.|+..|...+.+.+.+..-|.-+...|+.+..- -..+.+..|..+-..|++
T Consensus 34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v~~~~~~i 113 (462)
T 1ibr_B 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCV 113 (462)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchhhHHHHHH
Confidence 6677777777776555566666666677776521 123444444333222211
Q ss_pred -------------cCcHHHHHHHHcCC--ChhhHHhhHHHHHHHHhcC-hHHHHHHHHhcCCcchHHHHHHHHhcCC-Ch
Q 006478 359 -------------EGIFDIVTDALQSQ--DKKLVLTGTDILILFLNQD-PNLLRSYVVRQEGIPLLGLLVKGMITDF-GE 421 (643)
Q Consensus 359 -------------~gll~vi~~~L~~~--d~~ir~~~tdIl~~iie~d-p~lvR~~i~~q~~~~Ll~~Li~~ll~d~-~~ 421 (643)
.++++.+-..+.++ +..+|..|..+|..+.+.- |..+..++ ..++..+...+-.+. ++
T Consensus 114 ~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-----~~ll~~l~~~l~~~~~~~ 188 (462)
T 1ibr_B 114 AGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-----NEILTAIIQGMRKEEPSN 188 (462)
T ss_dssp HHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-----HHHHHHHHHHHSTTCCCH
T ss_pred HHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-----HHHHHHHHHHhCCCCCCH
Confidence 13556565666666 6677777777777766533 33222111 235555555553332 67
Q ss_pred hHHHHHHHHHHHhcCCCCCCch-hhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHH
Q 006478 422 DMHCQFLEILRSLLDSYTLSGA-QRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCF 500 (643)
Q Consensus 422 gl~~Q~~e~lk~LLDp~~~~~~-e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~f 500 (643)
.++.....++..++.- .... +...+.++ .++.| ..... .....+-...|+.|.-
T Consensus 189 ~vr~~a~~~l~~~~~~--~~~~~~~~~~~~~----l~~~l----~~~~~---------------~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 189 NVKLAATNALLNSLEF--TKANFDKESERHF----IMQVV----CEATQ---------------CPDTRVRVAALQNLVK 243 (462)
T ss_dssp HHHHHHHHHHHHHTTT--THHHHTSHHHHHH----HHHHH----HHHTT---------------CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHhhhhhHHHHH----HHHHH----HHhcC---------------CCCHHHHHHHHHHHHH
Confidence 8888888888877632 1000 00111111 12222 22100 1123455667888888
Q ss_pred HHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcC
Q 006478 501 CVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (643)
Q Consensus 501 cv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l 547 (643)
++..++..++.++-. .++.-++..++..+.-++..|+.|+.++...
T Consensus 244 l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 244 IMSLYYQYMETYMGP-ALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHCGGGCTTTTTT-THHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 888887666665432 6777677777777888999999999988654
No 50
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=92.02 E-value=6.3 Score=46.22 Aligned_cols=201 Identities=8% Similarity=0.065 Sum_probs=128.2
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHH
Q 006478 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (643)
Q Consensus 309 fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~ii 388 (643)
.++-|...+.+ +.+...+.+++.-|..++..+ . ..=..+++.|.++.+...|.+++..++..|++.+..++
T Consensus 581 aIppLv~LL~~-~~~~l~~~eAl~AL~NLa~~~----d----~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 581 VIRPLLNLLQQ-DCTALENFESLMALTNLASMN----E----SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV 651 (810)
T ss_dssp THHHHHHTTST-TSCHHHHHHHHHHHHHHTTSC----H----HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC-CCcHHHHHHHHHHHHHHhcCC----H----HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45666666653 223344455554444433321 1 12234677899999999999999999999999999988
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcC
Q 006478 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC 468 (643)
Q Consensus 389 e~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~ 468 (643)
.++. ....+ . ++.--+..|+..+ ...+.+++....-+|..|- +
T Consensus 652 ~~~~-~~~~~-v--~~~g~l~~Lv~LL-~s~d~~vq~~Aa~ALanLt------------------------------~-- 694 (810)
T 3now_A 652 MSED-VIKMF-E--GNNDRVKFLALLC-EDEDEETATACAGALAIIT------------------------------S-- 694 (810)
T ss_dssp TSHH-HHHHH-H--SSSSHHHHHHHGG-GCSSHHHHHHHHHHHHHHH------------------------------H--
T ss_pred CChH-HHHHH-H--hccCcHHHHHHHh-cCCCHHHHHHHHHHHHHHh------------------------------C--
Confidence 7554 33333 2 2222344444433 3345555555444433331 1
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhh-ccHHHHHHHHhhcccchhhHHHHHHHHHHhcC
Q 006478 469 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLL-NNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (643)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~-~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l 547 (643)
.+.- ....++. .+.+..+..|+.+.+--++-.|+..+.++..-
T Consensus 695 -----------------------------------~s~~-~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 695 -----------------------------------VSVK-CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp -----------------------------------HCHH-HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred -----------------------------------CCHH-HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 0111 1123444 67777888888888888899999999999875
Q ss_pred ChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHHHHHHHh
Q 006478 548 HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 592 (643)
Q Consensus 548 ~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~Ir~ 592 (643)
.++ +-++|++.+.+.|+.+++.....+++=+--.+++-++-|-+
T Consensus 739 s~e-~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 739 GEE-IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp CHH-HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred CHH-HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 554 68999999999999999876555677666667777666543
No 51
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=90.72 E-value=12 Score=43.61 Aligned_cols=264 Identities=9% Similarity=0.138 Sum_probs=151.0
Q ss_pred HHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccCh-------------------------hh---HHHH
Q 006478 301 SLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQM-------------------------VQ---QLRL 352 (643)
Q Consensus 301 ~~Lq~d~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~-------------------------~~---r~~~ 352 (643)
..|.+|+.|++.|+..++++..+ .--.++...|..+++...+++. .. ...-
T Consensus 369 e~L~~d~~~L~~Lv~llk~~~d~-s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~ 447 (778)
T 3opb_A 369 IMIRSNESFTEILLTMIKSQKMT-HCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILL 447 (778)
T ss_dssp HHHHHCHHHHHHHHHHHTTTCCT-THHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHH
Confidence 35666788999999999852211 2233444444444432222111 00 1111
Q ss_pred --HHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChh--HHHHHH
Q 006478 353 --FRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGED--MHCQFL 428 (643)
Q Consensus 353 --f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~g--l~~Q~~ 428 (643)
-+.+++.|..+.+-..++++++.+|..++-+|..+... +. .|..+++|.+ +..|+..+....+.+ .+....
T Consensus 448 ~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~-~R~~lvqqGa---l~~LL~lL~s~~~~~~~~k~~AA 522 (778)
T 3opb_A 448 FNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KN-FIPQLAQQGA---VKIILEYLANKQDIGEPIRILGC 522 (778)
T ss_dssp HHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GG-GHHHHHHTTH---HHHHHHHTTCC---CCHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH-HHHHHHHCCC---HHHHHHHHhcCCCcchHHHHHHH
Confidence 24567999999999999999999999999999998744 55 5887887643 223344443332222 444445
Q ss_pred HHHHHhc-------------------------CC--CCCC--------ch--hh------------------hHHHHHHH
Q 006478 429 EILRSLL-------------------------DS--YTLS--------GA--QR------------------DTIIEIFY 453 (643)
Q Consensus 429 e~lk~LL-------------------------Dp--~~~~--------~~--e~------------------d~fl~~FY 453 (643)
.||-.|+ .| +.-. .+ ++ ++.-...-
T Consensus 523 ~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii 602 (778)
T 3opb_A 523 RALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIV 602 (778)
T ss_dssp HHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHH
Confidence 5544444 21 1000 00 00 00000000
Q ss_pred H--hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchh-hhHHhhc-cH----HHHHHHH
Q 006478 454 E--KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI-KCNFLLN-NV----VDKVLLL 525 (643)
Q Consensus 454 ~--~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~-k~~il~~-~l----~~kv~~L 525 (643)
. ++++.|...+. .....+-..-||++|-.+. ++--+ +.|+-.+ +- +.-++.|
T Consensus 603 ~~~ga~~~L~~LL~-------------------s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~L 662 (778)
T 3opb_A 603 STKVYWSTIENLML-------------------DENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKL 662 (778)
T ss_dssp HSHHHHHHHHHGGG-------------------CSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHG
T ss_pred HhcCHHHHHHHHHh-------------------CCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHH
Confidence 0 11222222111 1123455667899998886 55443 4444333 22 4446678
Q ss_pred hhcccchhhHHHHHHHHHHhcCChhHHHHHHHhh-CChHHHHHHHhHhCCCCcchHHHHHHHHHHHH
Q 006478 526 TRRREKYLVVAAVRFVRTILSRHDEHLINHFVKN-NLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 591 (643)
Q Consensus 526 l~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~-~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~Ir 591 (643)
+.+.+.-.+-+|.-.+-.+- ..++...+-+++. +.++++++++.+.-+..++...++.=+.....
T Consensus 663 l~s~D~~~r~AAagALAnLt-s~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 663 LQLSDVESQRAVAAIFANIA-TTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp GGCSCHHHHHHHHHHHHHHH-HHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHhc-CCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 88888889999988887763 3456677888876 79999999998865677887777766655553
No 52
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=90.43 E-value=28 Score=39.56 Aligned_cols=230 Identities=12% Similarity=0.111 Sum_probs=127.2
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhh-ccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHH
Q 006478 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK-SLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 386 (643)
Q Consensus 308 ~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak-~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~ 386 (643)
.+++.+...+.+++.+.+-|..++.-|..++.... ++... .++ ..+++++..++.+++..+|..+++.+..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~----~~~----~~il~~l~~~~~~~~~~vr~~a~~~l~~ 243 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE----SER----HFIMQVVCEATQCPDTRVRVAALQNLVK 243 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSH----HHH----HHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhH----HHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 45556666677665456677778777776654321 22111 111 1256666667788899999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCC---------C---ch--hhhHHHHHH
Q 006478 387 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTL---------S---GA--QRDTIIEIF 452 (643)
Q Consensus 387 iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~---------~---~~--e~d~fl~~F 452 (643)
+++..|..+..++. ..++..++..+ .+.++.++.+..+.+..+.+.... . .+ ....+..-.
T Consensus 244 l~~~~~~~~~~~~~----~~l~~~~~~~~-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (876)
T 1qgr_A 244 IMSLYYQYMETYMG----PALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (876)
T ss_dssp HHHHSGGGCHHHHT----TTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH
T ss_pred HHHHhHHHHHHHHH----HHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHH
Confidence 99999988777653 24666666644 567788888888888877643210 0 00 001233223
Q ss_pred HHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccch
Q 006478 453 YEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKY 532 (643)
Q Consensus 453 Y~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~ 532 (643)
.++.++.+++-+... +... + .....++......+..+++ +... .+ -..++..+...+...+-.
T Consensus 319 ~~~ll~~ll~~l~~~---~~d~-~-~~~~~~r~~a~~~l~~l~~----~~~~-------~~-~~~~l~~l~~~l~~~~~~ 381 (876)
T 1qgr_A 319 LQYLVPILTQTLTKQ---DEND-D-DDDWNPCKAAGVCLMLLAT----CCED-------DI-VPHVLPFIKEHIKNPDWR 381 (876)
T ss_dssp HHHHHHHHHHHTTCC---CSSC-C-TTCCCHHHHHHHHHHHHHH----HHGG-------GG-HHHHHHHHHHHTTCSSHH
T ss_pred HHHHhHHHHHHhhcc---cccc-c-ccccHHHHHHHHHHHHHHH----HCcH-------hh-HHHHHHHHHHHccCCChH
Confidence 334444444332211 0000 0 0111222111222233322 2221 11 234556666667777778
Q ss_pred hhHHHHHHHHHHhcCCh-hHHHHHHHhhCChHHHHHHH
Q 006478 533 LVVAAVRFVRTILSRHD-EHLINHFVKNNLLKPIVDAF 569 (643)
Q Consensus 533 L~LaAlRf~R~ii~l~D-~fy~ryiik~~lf~Pv~~~~ 569 (643)
.+-+|++++..+...-. +.+..|+ ..++..++..+
T Consensus 382 ~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l 417 (876)
T 1qgr_A 382 YRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELM 417 (876)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHh
Confidence 89999999998775433 4444554 33666666666
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=90.32 E-value=26 Score=39.13 Aligned_cols=69 Identities=14% Similarity=0.242 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCC
Q 006478 362 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTL 440 (643)
Q Consensus 362 l~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~ 440 (643)
.+.+...+.++|+.+|..|.+.|..+..++|..+..+. .. +-..+.|.|..++....++|..|.++++.
T Consensus 315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~---------~~-i~~~l~d~d~~Ir~~alelL~~l~~~~nv 383 (618)
T 1w63_A 315 INILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHR---------ST-IVDCLKDLDVSIKRRAMELSFALVNGNNI 383 (618)
T ss_dssp HHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGH---------HH-HHHGGGSSCHHHHHHHHHHHHHHCCSSST
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHH---------HH-HHHHccCCChhHHHHHHHHHHHHcccccH
Confidence 34454557778888888888888888888887665432 12 22345788999999999999999988774
No 54
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=90.18 E-value=11 Score=42.91 Aligned_cols=242 Identities=12% Similarity=0.058 Sum_probs=129.6
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHh------------hhc-cChhhHHHHHHHHHhcCcHHHHHHHHcCCC
Q 006478 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGL------------SKS-LQMVQQLRLFRDLMNEGIFDIVTDALQSQD 373 (643)
Q Consensus 307 ~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~------------ak~-lq~~~r~~~f~~L~~~gll~vi~~~L~~~d 373 (643)
+.|+..|...+.+.+.+.+-|.-+...|+..+.. -.. +.+..|..+-..| -.+|.+++
T Consensus 38 ~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~l---------l~~l~~~~ 108 (861)
T 2bpt_A 38 LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNA---------LTALVSIE 108 (861)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHH---------HHHHTCSS
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHH---------HHHHCCCc
Confidence 7888889998887656667777777777765421 011 4444444333222 22467788
Q ss_pred hhhHHhhHHHHHHHHhcC-hHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 006478 374 KKLVLTGTDILILFLNQD-PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIF 452 (643)
Q Consensus 374 ~~ir~~~tdIl~~iie~d-p~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~F 452 (643)
+.+|..++..+..+..++ |. ..-..++..|++.+-.+.++..+...+.++..+.+.-. ...+ .
T Consensus 109 ~~vr~~~~~~l~~i~~~~~p~--------~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~--~~~~--~---- 172 (861)
T 2bpt_A 109 PRIANAAAQLIAAIADIELPH--------GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESAD--PQSQ--A---- 172 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG--------TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSS--TTSS--T----
T ss_pred hHHHHHHHHHHHHHHHhhCcc--------cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC--hhhh--H----
Confidence 899999999998888775 31 01123566666665443378887777788888875311 0001 0
Q ss_pred HHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccch
Q 006478 453 YEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKY 532 (643)
Q Consensus 453 Y~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~ 532 (643)
....++.++..+....... + ..+.+-...++.++-++..=...+......+.++.-+..++...+.-
T Consensus 173 ~~~~~~~ll~~l~~~l~~~----~---------~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 239 (861)
T 2bpt_A 173 LVSSSNNILIAIVQGAQST----E---------TSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE 239 (861)
T ss_dssp TGGGHHHHHHHHHHHHSTT----C---------CCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHH
T ss_pred HHHHHHHHHHHHHHhhcCC----C---------CCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHH
Confidence 1223344444443311000 0 01223334445554443210000000000122444444566666777
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHHHHHH
Q 006478 533 LVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 590 (643)
Q Consensus 533 L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~I 590 (643)
++-+|++++..++....+.+..|+.+ .++..++..+ .+.+.-+-.++++++..+
T Consensus 240 ~r~~a~~~l~~l~~~~~~~~~~~l~~-~l~~~~~~~~---~~~~~~vr~~a~~~l~~l 293 (861)
T 2bpt_A 240 VQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALTIATM---KSPNDKVASMTVEFWSTI 293 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHHHHHT---TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---cCCcHHHHHHHHHHHHHH
Confidence 88899999999887665555555532 4444444333 234445556666666544
No 55
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=89.78 E-value=9.1 Score=40.14 Aligned_cols=212 Identities=12% Similarity=0.055 Sum_probs=135.5
Q ss_pred cHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHH--hcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhc-ChHHHHHHH
Q 006478 323 LEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLM--NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ-DPNLLRSYV 399 (643)
Q Consensus 323 ~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~--~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~-dp~lvR~~i 399 (643)
+.+-++.+..-|..+|.-. .. .+..+ ..|.++.+-..|.+++..++..|+-.|..+... ++. .|..+
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~----~~-----~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~k~~i 166 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGD----VA-----NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTL 166 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSC----HH-----HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHcCC----HH-----HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHH-HHHHH
Confidence 3456777777777665321 11 23333 468899999999999999999999999988876 444 46655
Q ss_pred HhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCC
Q 006478 400 VRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASS 479 (643)
Q Consensus 400 ~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~ 479 (643)
.+.. -+..|++.|....+++++.....+|..|--- ....|..+.. -...++.|++-|....+.
T Consensus 167 ~~~G---~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~---~~~nk~~i~~--~~Gai~~Lv~lL~~~~~~--------- 229 (354)
T 3nmw_A 167 REVG---SVKALMECALEVKKESTLKSVLSALWNLSAH---CTENKADICA--VDGALAFLVGTLTYRSQT--------- 229 (354)
T ss_dssp HHTT---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT---CHHHHHHHHH--STTHHHHHHHHTTCCCSS---------
T ss_pred HHCC---CHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc---ChhhhHHHHH--hcCcHHHHHHHhccCCCc---------
Confidence 5432 2456777777777888888888888877320 0111222211 245677777765431110
Q ss_pred CCcccCCcHHHHHHHHHHHHHHH----hhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHH
Q 006478 480 GGRVESTKPEILSNICELLCFCV----LHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINH 555 (643)
Q Consensus 480 ~~~~~~~~~~ll~~l~eLL~fcv----~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ry 555 (643)
...++....+-.|..+. .... .+..+...+.+..++.++++...-++-.|++.++++...+ .-....
T Consensus 230 ------~~~~v~~~A~~aL~nLs~~~a~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~ 300 (354)
T 3nmw_A 230 ------NTLAIIESGGGILRNVSSLIATNED--HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN-PKDQEA 300 (354)
T ss_dssp ------SCCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHH
T ss_pred ------ccHHHHHHHHHHHHHHHhhccCCHH--HHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCC-HHHHHH
Confidence 00012222222222222 1222 3456778889999999999888888999999999987544 446788
Q ss_pred HHhhCChHHHHHHHh
Q 006478 556 FVKNNLLKPIVDAFV 570 (643)
Q Consensus 556 iik~~lf~Pv~~~~~ 570 (643)
|++.+.+.|+++++.
T Consensus 301 i~~~G~i~~Lv~LL~ 315 (354)
T 3nmw_A 301 LWDMGAVSMLKNLIH 315 (354)
T ss_dssp HHHTTHHHHHHTTTT
T ss_pred HHHCCCHHHHHHHHh
Confidence 999999999998774
No 56
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=89.25 E-value=20 Score=39.03 Aligned_cols=211 Identities=12% Similarity=0.065 Sum_probs=135.7
Q ss_pred HHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHH--hcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhc-ChHHHHHHHH
Q 006478 324 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLM--NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ-DPNLLRSYVV 400 (643)
Q Consensus 324 ~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~--~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~-dp~lvR~~i~ 400 (643)
.+-++.+..-|..+|.-. ... +..+ ..|.++.+-..|.+++..++..|+-.|..+... |+. .|..+.
T Consensus 214 ~~l~~~Aa~aL~nLa~~~----~~~-----k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~k~~I~ 283 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGD----VAN-----KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTLR 283 (458)
T ss_dssp HHHHHHHHHHHHHHHTTC----HHH-----HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC----ccc-----HHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHH-HHHHHH
Confidence 455777887777776421 112 3333 468889999999999999999999999988775 454 466555
Q ss_pred hcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCC
Q 006478 401 RQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSG 480 (643)
Q Consensus 401 ~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~ 480 (643)
+.. -+..|++.|....+++++.....+|..|--- ....+..+.. -...++.|++-|....+.
T Consensus 284 ~~G---aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~---~~~nk~~I~~--~~Gal~~Lv~LL~~~~~~---------- 345 (458)
T 3nmz_A 284 EVG---SVKALMECALEVKKESTLKSVLSALWNLSAH---CTENKADICA--VDGALAFLVGTLTYRSQT---------- 345 (458)
T ss_dssp HTT---HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH---CHHHHHHHHH--STTHHHHHHHHTTCCCSS----------
T ss_pred HcC---CHHHHHHHHhcCCCHHHHHHHHHHHHHHccC---CHHHHHHHHH--hcCcHHHHHHHhcCCCCc----------
Confidence 432 2456777777777888888777787777310 0011222221 134667776665431100
Q ss_pred CcccCCcHHHHHHHHHHHHHHH----hhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHH
Q 006478 481 GRVESTKPEILSNICELLCFCV----LHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHF 556 (643)
Q Consensus 481 ~~~~~~~~~ll~~l~eLL~fcv----~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryi 556 (643)
...++....+-.|.-+. .... .+..+...+.+..++.++++...-.+-.|++.+.++...++ -...+|
T Consensus 346 -----~~~~v~~~A~~aL~nLs~~~a~~~~--~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~i 417 (458)
T 3nmz_A 346 -----NTLAIIESGGGILRNVSSLIATNED--HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP-KDQEAL 417 (458)
T ss_dssp -----STTHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCH-HHHHHH
T ss_pred -----chHHHHHHHHHHHHHHHhcccCCHH--HHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCH-HHHHHH
Confidence 00012222222222222 2222 24567788899999999998887889999999999875444 467899
Q ss_pred HhhCChHHHHHHHh
Q 006478 557 VKNNLLKPIVDAFV 570 (643)
Q Consensus 557 ik~~lf~Pv~~~~~ 570 (643)
++.+.+.|+++++.
T Consensus 418 ~~~G~I~~Lv~LL~ 431 (458)
T 3nmz_A 418 WDMGAVSMLKNLIH 431 (458)
T ss_dssp HHHTHHHHHHTTTT
T ss_pred HHCCCHHHHHHHHh
Confidence 99999999998874
No 57
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=88.56 E-value=4.1 Score=46.06 Aligned_cols=68 Identities=10% Similarity=0.107 Sum_probs=52.7
Q ss_pred CcHHHHHHHH--cCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 006478 360 GIFDIVTDAL--QSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 360 gll~vi~~~L--~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LL 435 (643)
.+.+.+..+| .+.++-+|..|+--+..+...+|..++ ...++..|.+ ++.|+|+|++....-++..+.
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~-------~~~~~~~l~~-lL~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP-------MGDWTSRVVH-LLNDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC-------CCSCHHHHHH-HTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC-------chhHHHHHHH-HhCCCCccHHHHHHHHHHHHH
Confidence 4567778888 889999999999999999999999775 1345666655 558999999877777666653
No 58
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=88.34 E-value=38 Score=38.31 Aligned_cols=218 Identities=12% Similarity=0.093 Sum_probs=120.7
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhh-ccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHH
Q 006478 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK-SLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (643)
Q Consensus 309 fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak-~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~i 387 (643)
.++.+...+.+++.+.+-|..++.-|..++...+ ++.... + ...+++++..++.+++..+|..+++++..+
T Consensus 180 ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~----~----~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l 251 (861)
T 2bpt_A 180 ILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREG----E----RNYLMQVVCEATQAEDIEVQAAAFGCLCKI 251 (861)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHH----H----HHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChh----H----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4444555666665566778888877776654432 111110 0 112566666678889999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchh----------hhHHHHHHHHhhH
Q 006478 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQ----------RDTIIEIFYEKHL 457 (643)
Q Consensus 388 ie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e----------~d~fl~~FY~~~~ 457 (643)
++..|..+..++.+ .++..+.. .+.+.++.++.+..+++..+.+.......+ ...++.-++...+
T Consensus 252 ~~~~~~~~~~~l~~----~l~~~~~~-~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 326 (861)
T 2bpt_A 252 MSKYYTFMKPYMEQ----ALYALTIA-TMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVV 326 (861)
T ss_dssp HHHHGGGCHHHHHH----THHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHH
Confidence 99988877766532 35555444 346778899999999988887542100000 1124444445556
Q ss_pred HHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHH
Q 006478 458 GQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAA 537 (643)
Q Consensus 458 ~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaA 537 (643)
+.|+.-+... .+. .+ .....++ ....+.|.-+...-+- .+ -..++..+...+...+-..+-+|
T Consensus 327 ~~ll~~l~~~--~~d--~~-d~~~~~r-------~~a~~~L~~l~~~~~~----~~-~~~l~~~l~~~l~~~~~~~r~~a 389 (861)
T 2bpt_A 327 PNLLNLLTRQ--NED--PE-DDDWNVS-------MSAGACLQLFAQNCGN----HI-LEPVLEFVEQNITADNWRNREAA 389 (861)
T ss_dssp HHHHHHTTCC--CCC---C-CCCCHHH-------HHHHHHHHHHHHHHGG----GG-HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHhc--ccc--cc-cccCcHH-------HHHHHHHHHHHHHccH----hH-HHHHHHHHHHHcCCCChhHHHHH
Confidence 6665544321 110 00 0111111 1222333222222111 11 12345555566666666778899
Q ss_pred HHHHHHHhcCCh-hHHHHHH
Q 006478 538 VRFVRTILSRHD-EHLINHF 556 (643)
Q Consensus 538 lRf~R~ii~l~D-~fy~ryi 556 (643)
+.++.++...-. +.+..|+
T Consensus 390 ~~~l~~i~~~~~~~~~~~~l 409 (861)
T 2bpt_A 390 VMAFGSIMDGPDKVQRTYYV 409 (861)
T ss_dssp HHHHHHTSSSSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 999999875533 4444443
No 59
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=87.44 E-value=21 Score=40.75 Aligned_cols=106 Identities=13% Similarity=0.146 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHhhcCchhhhHHhhc-cHHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHH
Q 006478 489 EILSNICELLCFCVLHHPYRIKCNFLLN-NVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVD 567 (643)
Q Consensus 489 ~ll~~l~eLL~fcv~~H~~r~k~~il~~-~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~ 567 (643)
..-.+.+.+|+-.+.+.+-+....|+.. ..+.+++.++..+...++=.|+-++-.+.. .+.-..+-+.-.|.|+++++
T Consensus 137 ~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~-~n~~iQklVAFEnaFe~Lf~ 215 (651)
T 3grl_A 137 HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR-SNGAIQKIVAFENAFERLLD 215 (651)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHhccHHHHHH
Confidence 3456778999999999999999999977 578999999998888999999999988775 44557777778899999999
Q ss_pred HHhHhCC-CCcchHHHHHHHHHHHHhcCh
Q 006478 568 AFVANGN-RYNLLNSAVLELFEYIRKENL 595 (643)
Q Consensus 568 ~~~~n~~-r~NLlnSa~Lelfe~Ir~eni 595 (643)
++...|. +..++-+=||.++.-+-+.|.
T Consensus 216 Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 216 IITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 9987664 677899999999999998884
No 60
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=87.22 E-value=45 Score=37.83 Aligned_cols=240 Identities=12% Similarity=0.075 Sum_probs=131.1
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhh------------hccChhhHHHHHHHHHhcCcHHHHHHHHcCCCh
Q 006478 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS------------KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDK 374 (643)
Q Consensus 307 ~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~a------------k~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~ 374 (643)
+.|+..|...+.+++.+...|.-+...|+.+.... ..+.+..|..+-. .+-.+|.+++.
T Consensus 34 ~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~---------~ll~~l~~~~~ 104 (876)
T 1qgr_A 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKN---------YVLHTLGTETY 104 (876)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHH---------HHHHHTTTCCS
T ss_pred hhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHH---------HHHHHhCCCcH
Confidence 67888888888776566677777777888765310 1233333332222 12234567777
Q ss_pred hhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCC-ChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH
Q 006478 375 KLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDF-GEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY 453 (643)
Q Consensus 375 ~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~-~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY 453 (643)
.+ ..++.++..+..++-. ...-..++..|.+.+-.+. ++.++.....+|..+.+.-. ++ . .
T Consensus 105 ~~-~~~~~~l~~i~~~~~~-------~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~---~~---~----~ 166 (876)
T 1qgr_A 105 RP-SSASQCVAGIACAEIP-------VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID---PE---Q----L 166 (876)
T ss_dssp SS-CHHHHHHHHHHHHHGG-------GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC---HH---H----H
T ss_pred HH-HHHHHHHHHHHHhhCc-------ccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC---Hh---h----H
Confidence 78 8888888888766411 1122346667666554332 78888778888887764211 11 1 2
Q ss_pred HhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchh
Q 006478 454 EKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYL 533 (643)
Q Consensus 454 ~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L 533 (643)
..+++.++..+....... + ....+-...++.++-++..-.-.+......+.++.-+..++...+.-+
T Consensus 167 ~~~~~~ll~~l~~~l~~~----~---------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~v 233 (876)
T 1qgr_A 167 QDKSNEILTAIIQGMRKE----E---------PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV 233 (876)
T ss_dssp GGGHHHHHHHHHHHHSTT----C---------SCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HhHHHHHHHHHHHhhcCC----C---------CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHH
Confidence 445566655555421100 0 011222233444444433211111111112224555555666666678
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHHHHHH
Q 006478 534 VVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 590 (643)
Q Consensus 534 ~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~I 590 (643)
+.+|++++-.++...-+.+..|+. ..++..++..+ .+.+--+-.++++++.-+
T Consensus 234 r~~a~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~---~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 234 RVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAM---KSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHHHHHHHHHHHHHSGGGCHHHHT-TTHHHHHHHHH---TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHh---cCCchHHHHHHHHHHHHH
Confidence 889999999998876666666643 46677766654 233334445555555444
No 61
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=86.72 E-value=30 Score=35.24 Aligned_cols=166 Identities=10% Similarity=0.141 Sum_probs=113.0
Q ss_pred hhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH
Q 006478 375 KLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE 454 (643)
Q Consensus 375 ~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~ 454 (643)
.-|..|.+.|..+++.... -+.+ .+..+ +..|+..++...++.++.+.+.+|-.+..... ..++.+++.
T Consensus 55 e~k~~Al~~L~~lv~~~dn-a~~~-~~~G~---l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~---~~~~~vv~~--- 123 (296)
T 1xqr_A 55 QEREGALELLADLCENMDN-AADF-CQLSG---MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA---AIQEQVLGL--- 123 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHH-HHHH-HHTTH---HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH---HHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHhChhh-HHHH-HHcCC---HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH---HHHHHHHHC---
Confidence 3467788999999985442 3332 33222 33556645678899999999999988864211 122333321
Q ss_pred hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhh
Q 006478 455 KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLV 534 (643)
Q Consensus 455 ~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~ 534 (643)
..++.|++-|.+. + +..+....+--|+-++++++..... |...+.+.-++.++++.+.-++
T Consensus 124 g~l~~Ll~LL~~~-~-----------------~~~v~~~A~~ALsnl~~~~~~~~~~-~~~~ggi~~L~~lL~~~d~~v~ 184 (296)
T 1xqr_A 124 GALRKLLRLLDRD-A-----------------CDTVRVKALFAISCLVREQEAGLLQ-FLRLDGFSVLMRAMQQQVQKLK 184 (296)
T ss_dssp THHHHHHHHHHHC-S-----------------CHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHccC-C-----------------CHHHHHHHHHHHHHHHcCCcHHHHH-HHHCCCHHHHHHHHcCCCHHHH
Confidence 4677777655431 1 2234455667777777777665544 4456788888889998888999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHHhH
Q 006478 535 VAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVA 571 (643)
Q Consensus 535 LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~ 571 (643)
..|...+.++..-.+ -..+++++.+.+.|+++++..
T Consensus 185 ~~A~~aLs~L~~~~~-~~~~~vv~~g~i~~Lv~LL~~ 220 (296)
T 1xqr_A 185 VKSAFLLQNLLVGHP-EHKGTLCSMGMVQQLVALVRT 220 (296)
T ss_dssp HHHHHHHHHHHHHCG-GGHHHHHHTTHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCh-HHHHHHHHcCCHHHHHHHHcC
Confidence 999999999776544 478899999999999999854
No 62
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=86.44 E-value=46 Score=37.95 Aligned_cols=233 Identities=14% Similarity=0.168 Sum_probs=126.1
Q ss_pred HHhhHHHHHhhHHHHHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHH
Q 006478 285 VANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDI 364 (643)
Q Consensus 285 ~s~LnS~I~fN~~eIV~~Lq~d~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~v 364 (643)
...|..+.-.+....=+.+.+.+.=++.|.+.+.++ ...-|.+++.+|-+++.-..++|. . +.-.|.|+.
T Consensus 143 lqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~--rE~iRneallLL~~Lt~~n~~iQk---l-----VAFEnaFe~ 212 (651)
T 3grl_A 143 VKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS--REVIRNDGVLLLQALTRSNGAIQK---I-----VAFENAFER 212 (651)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS--SHHHHHHHHHHHHHHHTTCHHHHH---H-----HHHTTHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc--hHHHHHHHHHHHHHHhcCCHHHHH---H-----HHHhccHHH
Confidence 344555444444445555655666788899999875 457899999999998876666652 2 234577776
Q ss_pred HHHHHcCCCh----hhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCCh------hHHH--HHHHHHH
Q 006478 365 VTDALQSQDK----KLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGE------DMHC--QFLEILR 432 (643)
Q Consensus 365 i~~~L~~~d~----~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~------gl~~--Q~~e~lk 432 (643)
+-.++..+.. .+..-+..++..++.++|+- .+ .+++.+. +.-|+..+-.+.+. -++. -+.++++
T Consensus 213 Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sN-Q~-~FrEt~~--i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIr 288 (651)
T 3grl_A 213 LLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSN-QN-FFKEGSY--IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVR 288 (651)
T ss_dssp HHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHH-HH-HHHHTTC--GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHH-HH-HHHHcCC--HHHHHHHhCCCccccccHHHHHHHHHHHHHHHH
Confidence 6666654433 34455667888999999973 33 3443221 11112212111111 1111 2668999
Q ss_pred HhcCCCCCCchhhhHHHHHHHHh-hHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhh
Q 006478 433 SLLDSYTLSGAQRDTIIEIFYEK-HLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKC 511 (643)
Q Consensus 433 ~LLDp~~~~~~e~d~fl~~FY~~-~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~ 511 (643)
+|+.|.+..+..+ ..=+.|++. .+..|+.-+++.. ....+....+-.++=.++.|+. ...
T Consensus 289 lLv~~~~~~~~t~-~nQ~~~~~~g~l~~Ll~ll~~~~-----------------~p~~i~~~Al~tla~~irgN~~-~Q~ 349 (651)
T 3grl_A 289 VLVSPNNPPGATS-SCQKAMFQCGLLQQLCTILMATG-----------------VPADILTETINTVSEVIRGCQV-NQD 349 (651)
T ss_dssp HHTCTTSCHHHHH-HHHHHHHHTTHHHHHHHHHTCSS-----------------CCHHHHHHHHHHHHHHHTTCHH-HHH
T ss_pred HHhCCCCCCCCCH-HHHHHHHHCCCHHHHHHHHccCC-----------------CCHHHHHHHHHHHHHHHhCCHH-HHH
Confidence 9999866421111 122345554 3566666544311 1122222223333334444433 222
Q ss_pred HHhhc--------cHHHH-HHHHhhcccc-hhhHHHHHHHHHHhcCChh
Q 006478 512 NFLLN--------NVVDK-VLLLTRRREK-YLVVAAVRFVRTILSRHDE 550 (643)
Q Consensus 512 ~il~~--------~l~~k-v~~Ll~~~~k-~L~LaAlRf~R~ii~l~D~ 550 (643)
+|-.. ..+.. .+.++++++. -+|.||.-||++.+..|++
T Consensus 350 ~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~ 398 (651)
T 3grl_A 350 YFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK 398 (651)
T ss_dssp HHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence 33222 22222 2334556654 5689999999999877763
No 63
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=86.31 E-value=31 Score=36.88 Aligned_cols=207 Identities=14% Similarity=0.131 Sum_probs=130.0
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHh
Q 006478 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (643)
Q Consensus 310 L~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie 389 (643)
++.|...+++++ .+.+..++..|+.+|. + .+..| ..+++.|.++.+-..|++++..++..|+-.|..+.-
T Consensus 4 l~~lv~~L~s~~--~~~q~~A~~~L~~l~~---~-~~~~~----~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~ 73 (457)
T 1xm9_A 4 IPKAVQYLSSQD--EKYQAIGAYYIQHTCF---Q-DESAK----QQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF 73 (457)
T ss_dssp HHHHHHHHHSSC--THHHHHHHHHHHHHTS---S-CSSHH----HHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCC--HHHHHHHHHHHHHHHc---C-ChHHH----HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 455666666653 4667888888887663 1 12223 356789999999999999999999999999999988
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCC
Q 006478 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCP 469 (643)
Q Consensus 390 ~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~ 469 (643)
.+|. .|..+.+..+. ..|++.|-.+.++.++.+.+.+|..|--.+ .-|..+. +..++.|++-|.....
T Consensus 74 ~~~~-~k~~i~~~G~i---~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~----~~~~~i~----~g~i~~Lv~ll~~~~s 141 (457)
T 1xm9_A 74 RSTT-NKLETRRQNGI---REAVSLLRRTGNAEIQKQLTGLLWNLSSTD----ELKEELI----ADALPVLADRVIIPFS 141 (457)
T ss_dssp SCHH-HHHHHHHTTCH---HHHHHHHTTCCCHHHHHHHHHHHHHHHTSS----STHHHHH----HHHHHHHHHHTTHHHH
T ss_pred CCHH-HHHHHHHcCCH---HHHHHHHhhCCCHHHHHHHHHHHHHHhcCH----HhHHHHH----hccHHHHHHHHhcccc
Confidence 7676 46666665443 345665544678999999999998886331 1233333 2667777776532000
Q ss_pred CcccccccCCCCccc-CCcHHHHHHHHHHHHHHHhhcCchhhhHHhhc-cHHHHHHHHhhc------ccchhhHHHHHHH
Q 006478 470 QEGIAQSASSGGRVE-STKPEILSNICELLCFCVLHHPYRIKCNFLLN-NVVDKVLLLTRR------REKYLVVAAVRFV 541 (643)
Q Consensus 470 ~~~~~~~~~~~~~~~-~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~-~l~~kv~~Ll~~------~~k~L~LaAlRf~ 541 (643)
. ...+. . ...+ .....++...+-.|+.+... ...+..+... +++..++.++.. .+.-.+-.|+..+
T Consensus 142 ~--~~~~~-~-~~~~e~~~~~v~~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L 215 (457)
T 1xm9_A 142 G--WCDGN-S-NMSREVVDPEVFFNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVL 215 (457)
T ss_dssp T--CC-----------CCCHHHHHHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHH
T ss_pred c--cccCc-c-chhcccccHHHHHHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHH
Confidence 0 00000 0 0000 13456777777777777765 3355667775 888888888874 2223444566666
Q ss_pred HHH
Q 006478 542 RTI 544 (643)
Q Consensus 542 R~i 544 (643)
|++
T Consensus 216 ~nL 218 (457)
T 1xm9_A 216 HNL 218 (457)
T ss_dssp HHH
T ss_pred Hhc
Confidence 665
No 64
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=86.03 E-value=48 Score=37.00 Aligned_cols=207 Identities=12% Similarity=0.141 Sum_probs=117.6
Q ss_pred CcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCC
Q 006478 360 GIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT 439 (643)
Q Consensus 360 gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~ 439 (643)
.+++.+..+|.++++.+|..|+--+..+...+|..++.+ +.. +..++.|.|++++.....+|..+...
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~---------~~~-l~~lL~D~d~~V~~~Al~~L~~i~~~-- 209 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMF---------LPA-TKNLLNEKNHGVLHTSVVLLTEMCER-- 209 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGG---------GGG-TTTSTTCCCHHHHHHHHHHHHHHCCS--
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHH---------HHH-HHHHhCCCCHhHHHHHHHHHHHHHHh--
Confidence 457788888999999999999999999999999887642 222 23456899999988888888887532
Q ss_pred CCchhhhHHHHHHHHhhHHHHHHHHHhc----CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhh---H
Q 006478 440 LSGAQRDTIIEIFYEKHLGQLIDVITAS----CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKC---N 512 (643)
Q Consensus 440 ~~~~e~d~fl~~FY~~~~~~L~~pl~~~----~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~---~ 512 (643)
.++ . .-.|.+.++.|++-|... .+++... . ....+.+...++++|....+..+.-.+. +
T Consensus 210 --~~~---~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~------~--~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~ 275 (618)
T 1w63_A 210 --SPD---M-LAHFRKLVPQLVRILKNLIMSGYSPEHDV------S--GISDPFLQVRILRLLRILGRNDDDSSEAMNDI 275 (618)
T ss_dssp --HHH---H-HHHHHTTHHHHHHHHHHHHHSCCCTTTCS------S--SSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHH
T ss_pred --ChH---H-HHHHHHHHHHHHHHHHHHHcCCCCccccc------c--CCCCChHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 111 1 224567777777766542 1111100 0 0124556666777776665543211000 0
Q ss_pred ---Hh------------------------------hccHHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHH--
Q 006478 513 ---FL------------------------------LNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFV-- 557 (643)
Q Consensus 513 ---il------------------------------~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryii-- 557 (643)
++ ....+..+..++.+++.-++.+||+.+..++..+-+.+.+|..
T Consensus 276 L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i 355 (618)
T 1w63_A 276 LAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTI 355 (618)
T ss_dssp HHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHH
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 00 0012233445566677777888888887777554332222211
Q ss_pred ----hh-C--ChHHHHHHHhHhCCCCcchHHHHHHHHHHHHhc
Q 006478 558 ----KN-N--LLKPIVDAFVANGNRYNLLNSAVLELFEYIRKE 593 (643)
Q Consensus 558 ----k~-~--lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~Ir~e 593 (643)
++ + +=.--++++..-.+..|. ..-+-||.+|+...
T Consensus 356 ~~~l~d~d~~Ir~~alelL~~l~~~~nv-~~iv~eL~~~l~~~ 397 (618)
T 1w63_A 356 VDCLKDLDVSIKRRAMELSFALVNGNNI-RGMMKELLYFLDSC 397 (618)
T ss_dssp HHGGGSSCHHHHHHHHHHHHHHCCSSST-HHHHHHHHHHHHHC
T ss_pred HHHccCCChhHHHHHHHHHHHHcccccH-HHHHHHHHHHHHhC
Confidence 00 0 000113344445556663 55566777777543
No 65
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=82.50 E-value=6.7 Score=35.66 Aligned_cols=95 Identities=22% Similarity=0.347 Sum_probs=68.3
Q ss_pred CceEEEEeCC-CCCceeccceEEEEEEe-C--C----CcceeEEEEec--CCCcceeEeecCCCcccccccCeEEEecCC
Q 006478 15 QRVKVYRLND-DGKWDDQGTGHVTVDSM-E--R----SEELCLFVIDE--EDNETILLHRISPDDIYRKQEDTIISWRDP 84 (643)
Q Consensus 15 ~RVKvY~L~~-~~~W~D~GTG~~s~~~~-e--~----~~~~~l~V~sE--~d~~~lL~~~I~~~~~YqrQqeTlIvW~e~ 84 (643)
-|+-|..-++ .+.|.--|-|=++..++ . + .... ..|.++ .|...+|+..|.++-.|.|=-.|.=.|.|+
T Consensus 16 ~rA~Vm~~Dd~tk~WlP~gg~glS~v~iy~~~~~~~~~~~~-yRIvg~r~~d~~vvinc~I~~~l~Ynkatp~FHqWrd~ 94 (130)
T 3syx_A 16 VRAVVMTRDDSSGGWLPLGGSGLSSVTVFKVPHQEENGCAD-FFIRGERLRDKMVVLECMLKKDLIYNKVTPTFHHWKID 94 (130)
T ss_dssp EEEEEEEECSSSSCEEESSSSCCEEEEEEEEESSSTTSSEE-EEEEEEETTTCCEEEEEECCTTCEEEEEETTEEEEEET
T ss_pred EEEEeeeEcCCCCceEeCCCCCCceEEEEeccCCCCCCCcE-EEEEEEecCCCeEEEeeeecCCceEEeccccccccccc
Confidence 4677777765 67899987654433322 1 1 1123 334444 677889999999999999999999999998
Q ss_pred CccccccccccCccchhHHHHHHHHHhh
Q 006478 85 EYSTELALSFQEPTGCSYIWDNICNVQR 112 (643)
Q Consensus 85 ~~~~dlALSFQe~~GC~~iw~~I~~vQ~ 112 (643)
+ .=+-|.||.++.....=+.+.++-.
T Consensus 95 ~--~~yGL~F~S~~dA~~F~~~~~~Al~ 120 (130)
T 3syx_A 95 D--KKFGLTFQSPADARAFDRGIRRAIE 120 (130)
T ss_dssp T--EEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred C--eEeecccCCHHHHHHHHHHHHHHHH
Confidence 7 4489999999988777666655543
No 66
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=82.21 E-value=4.8 Score=36.75 Aligned_cols=94 Identities=13% Similarity=0.238 Sum_probs=65.0
Q ss_pred ceEEEEeCC-CCCceeccceEEEEEEe-CCCcceeEEEEecCCCcceeEeecCCCcccccccCeEEEecCCCcccccccc
Q 006478 16 RVKVYRLND-DGKWDDQGTGHVTVDSM-ERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALS 93 (643)
Q Consensus 16 RVKvY~L~~-~~~W~D~GTG~~s~~~~-e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~e~~~~~dlALS 93 (643)
-|-||..++ .++|+-.|..=.-..|. +.....+++|-+-.+.+.+. ..|.++..++-|++-|| |...+ +.-+.|-
T Consensus 37 ~v~vY~f~~~~~~W~K~~iEG~LFv~~R~~~P~~~~ivLNR~~~~n~~-~~l~~~~~~e~~~~~li-~r~~~-~~I~GiW 113 (134)
T 2lyd_A 37 HVAFYTFNSSQNEWEKTDVEGAFFIYHRNAEPFHSIFINNRLNTTSFV-EPITGSLELQSQPPFLL-YRNER-SRIRGFW 113 (134)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEEEECSSSSSEEEEEEETTTTEEEE-EECCSSCEEEEETTEEE-EEEGG-GEEEEEE
T ss_pred eEEEEEecCCcCceeEcCCcceEEEEEccCCCceEEEEEcCCCCccee-EEcCCCcEEEeeCCEEE-EECCC-CcEEEEE
Confidence 488999965 46898876431111121 22223567777766655443 46888899999988665 55443 5668999
Q ss_pred ccCccchhHHHHHHHHHhh
Q 006478 94 FQEPTGCSYIWDNICNVQR 112 (643)
Q Consensus 94 FQe~~GC~~iw~~I~~vQ~ 112 (643)
|-+.+-|..|.+.+..+++
T Consensus 114 f~~~~d~~~i~~~l~~l~~ 132 (134)
T 2lyd_A 114 FYNSEECDRISGLVNGLLK 132 (134)
T ss_dssp ESSHHHHHHHHHHHHHHHH
T ss_pred ecChHHHHHHHHHHHHHHh
Confidence 9999999999999988865
No 67
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=81.94 E-value=28 Score=37.84 Aligned_cols=204 Identities=14% Similarity=0.143 Sum_probs=121.8
Q ss_pred HHHhcCcHHHHHHHHcC-----------CChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhH
Q 006478 355 DLMNEGIFDIVTDALQS-----------QDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDM 423 (643)
Q Consensus 355 ~L~~~gll~vi~~~L~~-----------~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl 423 (643)
.+++.|.++.+-..|.. .+..++..|+-+|..+...++. .+..+....+ .+..|++.| ...++.+
T Consensus 184 ~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~-~k~~i~~~~G--aIp~LV~LL-~s~~~~v 259 (458)
T 3nmz_A 184 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA-NKATLCSMKG--CMRALVAQL-KSESEDL 259 (458)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHCHH--HHHHHHHGG-GCSCHHH
T ss_pred HHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc-cHHHHHHcCC--cHHHHHHHH-hCCCHHH
Confidence 45688999888888742 2345778888999888877764 2433332222 355666655 4678899
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHh
Q 006478 424 HCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVL 503 (643)
Q Consensus 424 ~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~ 503 (643)
+.+.+.+|+.|-...+ ...|..+. -...++.|++-|.... +..+....+-.|.-+..
T Consensus 260 ~~~A~~aL~nLs~~~~--~~~k~~I~---~~GaI~~LV~lLl~s~------------------~~~v~~~A~~aL~nLs~ 316 (458)
T 3nmz_A 260 QQVIASVLRNLSWRAD--VNSKKTLR---EVGSVKALMECALEVK------------------KESTLKSVLSALWNLSA 316 (458)
T ss_dssp HHHHHHHHHHHTSSCC--HHHHHHHH---HTTHHHHHHHHHTTCC------------------SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC--HHHHHHHH---HcCCHHHHHHHHhcCC------------------CHHHHHHHHHHHHHHcc
Confidence 9999999999954211 11223222 2356788877664310 12222333333333333
Q ss_pred hcCchhhhHHh-hccHHHHHHHHhhcccc----hhhHHHHHHHHHHhc---CChhHHHHHHHhhCChHHHHHHHhHhCCC
Q 006478 504 HHPYRIKCNFL-LNNVVDKVLLLTRRREK----YLVVAAVRFVRTILS---RHDEHLINHFVKNNLLKPIVDAFVANGNR 575 (643)
Q Consensus 504 ~H~~r~k~~il-~~~l~~kv~~Ll~~~~k----~L~LaAlRf~R~ii~---l~D~fy~ryiik~~lf~Pv~~~~~~n~~r 575 (643)
|.-..|.-+. ....+.-++.++..... -++-.|...+|++-. .+++ ...-+++.+.+.|++.++.. ++
T Consensus 317 -~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~-~~~~i~~~G~i~~Lv~LL~~-~~- 392 (458)
T 3nmz_A 317 -HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED-HRQILRENNCLQTLLQHLKS-HS- 392 (458)
T ss_dssp -HCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHSSC-SC-
T ss_pred -CCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHH-HHHHHHHcccHHHHHHHHcC-CC-
Confidence 2223355555 56788888888875543 256667777777543 4554 67788899999999988853 22
Q ss_pred CcchHHHHHHHHHH
Q 006478 576 YNLLNSAVLELFEY 589 (643)
Q Consensus 576 ~NLlnSa~Lelfe~ 589 (643)
......|+--+...
T Consensus 393 ~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 393 LTIVSNACGTLWNL 406 (458)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 23444455444443
No 68
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=80.51 E-value=58 Score=33.87 Aligned_cols=225 Identities=14% Similarity=0.126 Sum_probs=132.9
Q ss_pred HhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcC-----------CChhhHHhhHHHHHHHHhcChH
Q 006478 325 ESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQS-----------QDKKLVLTGTDILILFLNQDPN 393 (643)
Q Consensus 325 ~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~-----------~d~~ir~~~tdIl~~iie~dp~ 393 (643)
+..-.++..|..+. .. +..| +.+++.|.++.+-..|.. .+..++..|+-.|..+...++.
T Consensus 47 ~~~~~A~~aL~nls---~d--~e~R----~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~ 117 (354)
T 3nmw_A 47 HQICPAVCVLMKLS---FD--EEHR----HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA 117 (354)
T ss_dssp GTHHHHHHHHHHHH---TS--HHHH----HHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHHc---CC--HHHH----HHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 44445666555533 22 3333 346788998888877742 1245788889999888877764
Q ss_pred HHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCccc
Q 006478 394 LLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGI 473 (643)
Q Consensus 394 lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~ 473 (643)
.|..+....+ .+..|++.| ...++.++.+...+|+.|-..++ ...|+.+. -...++.|++-|....
T Consensus 118 -~k~~i~~~~G--aIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~--~~~k~~i~---~~G~Ip~Lv~lL~~~~----- 183 (354)
T 3nmw_A 118 -NKATLCSMKG--CMRALVAQL-KSESEDLQQVIASVLRNLSWRAD--VNSKKTLR---EVGSVKALMECALEVK----- 183 (354)
T ss_dssp -HHHHHHHCHH--HHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCC--HHHHHHHH---HTTHHHHHHHHHHHCC-----
T ss_pred -HHHHHHHcCC--cHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCC--HHHHHHHH---HCCCHHHHHHHHhcCC-----
Confidence 2443333222 345666655 46788999999999999954211 11233332 2356788888765421
Q ss_pred ccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHh-hccHHHHHHHHhhcccc----hhhHHHHHHHHHHhc--
Q 006478 474 AQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFL-LNNVVDKVLLLTRRREK----YLVVAAVRFVRTILS-- 546 (643)
Q Consensus 474 ~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il-~~~l~~kv~~Ll~~~~k----~L~LaAlRf~R~ii~-- 546 (643)
+.++....+..|.-+.. |.-..|.-+. ....+.-++.++..... -++-.|...+|++-.
T Consensus 184 -------------~~~~~~~A~~aL~nLs~-~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~ 249 (354)
T 3nmw_A 184 -------------KESTLKSVLSALWNLSA-HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249 (354)
T ss_dssp -------------CHHHHHHHHHHHHHHHT-TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHHHHc-cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc
Confidence 12233333344443333 2223355555 67788888888875432 255566677776543
Q ss_pred -CChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHHHHHH
Q 006478 547 -RHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEY 589 (643)
Q Consensus 547 -l~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~ 589 (643)
..++ ...-+++.+.+.|++.++.. + .......|+--+...
T Consensus 250 a~~~~-~~~~i~~~g~i~~Lv~lL~~-~-~~~v~~~A~~aL~nL 290 (354)
T 3nmw_A 250 ATNED-HRQILRENNCLQTLLQHLKS-H-SLTIVSNACGTLWNL 290 (354)
T ss_dssp TTCHH-HHHHHHTTTHHHHHHHHTTC-S-CHHHHHHHHHHHHHH
T ss_pred cCCHH-HHHHHHHcCCHHHHHHHHcC-C-ChHHHHHHHHHHHHH
Confidence 4555 67788899999999998863 2 223455555444443
No 69
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=80.47 E-value=34 Score=31.68 Aligned_cols=77 Identities=12% Similarity=0.010 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHH---------HhhhccChhhHHHHHHHHHhc---CcHHHHHHHHcCCC
Q 006478 306 DSTFIQELFARLRSPTTLEESKKNLVHFLHEFC---------GLSKSLQMVQQLRLFRDLMNE---GIFDIVTDALQSQD 373 (643)
Q Consensus 306 d~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c---------~~ak~lq~~~r~~~f~~L~~~---gll~vi~~~L~~~d 373 (643)
++.-++.|...++++ +...|..++.-|.++. ...++-.+.-|..-...|... +.++.+...|.+++
T Consensus 17 ~~~~~~~L~~~L~~~--~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~ 94 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDD--SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDED 94 (211)
T ss_dssp CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSS
T ss_pred CHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCC
Confidence 445556666666543 2344444444443321 111111223333333444333 35666666677777
Q ss_pred hhhHHhhHHHH
Q 006478 374 KKLVLTGTDIL 384 (643)
Q Consensus 374 ~~ir~~~tdIl 384 (643)
..+|..++..|
T Consensus 95 ~~vr~~a~~aL 105 (211)
T 3ltm_A 95 GWVRQSAAVAL 105 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77666555444
No 70
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=77.85 E-value=9.8 Score=40.93 Aligned_cols=126 Identities=17% Similarity=0.304 Sum_probs=71.8
Q ss_pred HHHHHhhcCHHHHHHHHHHh-CC-CCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChh
Q 006478 298 YVVSLLKDDSTFIQELFARL-RS-PTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKK 375 (643)
Q Consensus 298 eIV~~Lq~d~~fL~eLf~~l-~~-~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ 375 (643)
+|++++..|+..-..+..-+ +- |.++. . .-+.||.|+-.+...+++.+ |... ..-+|..+..++.++.-+
T Consensus 237 cv~qf~eKDp~L~~~vi~~LLk~WP~tns--~-KevlFL~Ele~iLe~~~~~~----f~~i-~~~lf~~la~ci~S~hfq 308 (403)
T 3fga_B 237 CVVQFLEKDSTLTEPVVMALLKYWPKTHS--P-KEVMFLNELEEILDVIEPSE----FVKI-MEPLFRQLAKCVSSPHFQ 308 (403)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHTCCSSCH--H-HHHHHHHHHHHHHTTCCHHH----HHHH-HHHHHHHHHHHHTCSCHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHhCCCCCc--H-HHHHHHHHHHHHHHhCCHHH----HHHH-HHHHHHHHHHHHCCCCHH
Confidence 78899998986555444322 11 22321 1 23779999988887776542 2211 122677778888888766
Q ss_pred hHHhhH-----HHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCC
Q 006478 376 LVLTGT-----DILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT 439 (643)
Q Consensus 376 ir~~~t-----dIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~ 439 (643)
+--.|. +-++.++..++..+--.+ +..|-+..-.-=+..++.....++|+|+|-+.
T Consensus 309 VAErAL~~wnNe~i~~li~~n~~~IlPii--------~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 309 VAERALYYWNNEYIMSLISDNAAKILPIM--------FPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp HHHHHHGGGGCHHHHHHHHTTHHHHHHHH--------HHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhccHHHHHHHHHhHHHHHHHH--------HHHHHHHHHHccCHHHHHHHHHHHHHHHHhCH
Confidence 543332 445555555554433222 12222222222367788888899999986443
No 71
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=77.54 E-value=64 Score=34.37 Aligned_cols=176 Identities=14% Similarity=0.126 Sum_probs=114.0
Q ss_pred HHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCC
Q 006478 362 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS 441 (643)
Q Consensus 362 l~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~ 441 (643)
++.+-..|.+++..++..|+..|..+..+++. .|..+.+..+ +..|++.| .+.++.++.+...+|+.|.-..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~---i~~Lv~lL-~s~~~~~~~~A~~aL~nLa~~~--- 75 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGG---ICKLVDLL-RSPNQNVQQAAAGALRNLVFRS--- 75 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTH---HHHHHHHT-TSSCHHHHHHHHHHHHHHHSSC---
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCC---HHHHHHHH-cCCCHHHHHHHHHHHHHHhcCC---
Confidence 34455667888999999999999988877766 4544544332 44556544 4678899999999999886420
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHH
Q 006478 442 GAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDK 521 (643)
Q Consensus 442 ~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~k 521 (643)
...|..+.+ ...++.|++-|... ..+++....+-.|.-+..+. ..|..++. +.+..
T Consensus 76 ~~~k~~i~~---~G~i~~Lv~lL~~~------------------~~~~~~~~a~~aL~nLa~~~--~~~~~i~~-g~i~~ 131 (457)
T 1xm9_A 76 TTNKLETRR---QNGIREAVSLLRRT------------------GNAEIQKQLTGLLWNLSSTD--ELKEELIA-DALPV 131 (457)
T ss_dssp HHHHHHHHH---TTCHHHHHHHHTTC------------------CCHHHHHHHHHHHHHHHTSS--STHHHHHH-HHHHH
T ss_pred HHHHHHHHH---cCCHHHHHHHHhhC------------------CCHHHHHHHHHHHHHHhcCH--HhHHHHHh-ccHHH
Confidence 112222222 24577777765311 12344455566666666653 36677888 88999
Q ss_pred HHHHhhc--------c--------cchhhHHHHHHHHHHhcCChhHHHHHHHhh-CChHHHHHHHhH
Q 006478 522 VLLLTRR--------R--------EKYLVVAAVRFVRTILSRHDEHLINHFVKN-NLLKPIVDAFVA 571 (643)
Q Consensus 522 v~~Ll~~--------~--------~k~L~LaAlRf~R~ii~l~D~fy~ryiik~-~lf~Pv~~~~~~ 571 (643)
++.++.. . +.-+.-.|++.++++-+- ++ .-..+++. +.+.|++.++..
T Consensus 132 Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~-~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 132 LADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DA-GRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp HHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HH-HHHHHTTSTTHHHHHHHHHHH
T ss_pred HHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HH-HHHHHHHcCCCHHHHHHHHHh
Confidence 9988831 1 122344788889987754 44 55666676 999999999875
No 72
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=77.47 E-value=6.6 Score=42.85 Aligned_cols=72 Identities=25% Similarity=0.335 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHh--cCCh--------h-hHhhhhcchhHhHHhhhcc------cCC
Q 006478 167 DQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIIL--LNSP--------Q-IFEKIFGDELMMDIIGSLE------YDP 229 (643)
Q Consensus 167 ~~~Yi~kL~~lF~~~Edle~~~~L~~L~~Ivk~iil--lNd~--------~-i~E~llsDe~i~~vvG~LE------YDp 229 (643)
+..++.+|+++|+. +|...=..|..|++.|.. ++-. . ++..+...+..-|+--+|| -.=
T Consensus 160 d~~Fi~~Ll~lfdS----eDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGf 235 (449)
T 2npp_B 160 DQKFVLQLLELFDS----EDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF 235 (449)
T ss_dssp CHHHHHHHHHTTTS----STHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHHcCC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhcc
Confidence 56899999999973 333333333333332222 2221 1 2333445555555555555 232
Q ss_pred CCCcccchHHhhh
Q 006478 230 DVPHVQHHRNFLK 242 (643)
Q Consensus 230 ~~p~~~~HR~fL~ 242 (643)
..|-+..|+.||.
T Consensus 236 a~PLKeehk~fl~ 248 (449)
T 2npp_B 236 ALPLKEEHKIFLL 248 (449)
T ss_dssp CSSCCHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 3344467888874
No 73
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=76.75 E-value=9.6 Score=34.46 Aligned_cols=92 Identities=14% Similarity=0.249 Sum_probs=60.1
Q ss_pred CceEEEEeCC-CCCceeccce-EEEEEEeCCCcceeEEEEecCCCcceeEeecCCCcccccccCeEEEecCCCccccccc
Q 006478 15 QRVKVYRLND-DGKWDDQGTG-HVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELAL 92 (643)
Q Consensus 15 ~RVKvY~L~~-~~~W~D~GTG-~~s~~~~e~~~~~~l~V~sE~d~~~lL~~~I~~~~~YqrQqeTlIvW~e~~~~~dlAL 92 (643)
.-|=||..+. .++|...|.. -..+ +..+....+++|-+-.+.+.+ ...|.++..++-|++-|| |+.+. +.=+++
T Consensus 31 ~~v~vY~f~~~~~~W~K~~iEGtLFv-~~R~~P~~~~iVlNR~~~~n~-~~~i~~~~~~e~~~~~l~-~r~~~-~~i~Gi 106 (127)
T 2qkl_A 31 SHVAVYQFDVGSQKWLKTSIEGTFFL-VKDQRARVGYVILNRNSPENL-YLFINHPSNVHLVDRYLI-HRTEN-QHVVGL 106 (127)
T ss_dssp EEEEEECC------CCEEEEEEEEEE-EEETTCCEEEEEEESSSSCCE-EEEECSGGGEEEETTEEE-EEETT-TEEEEE
T ss_pred CeEEEEEecCCCCceEEcCcEEEEEE-EEccCCceEEEEEcCCCCcCe-eEecCCCceEEEeCCEEE-EEcCC-CcEEEE
Confidence 3578999975 6799987642 1111 211123356777776666544 346888999998887555 66655 677889
Q ss_pred cccCccchhHHHHHHHHH
Q 006478 93 SFQEPTGCSYIWDNICNV 110 (643)
Q Consensus 93 SFQe~~GC~~iw~~I~~v 110 (643)
=|-+.+-|..|.+.+..+
T Consensus 107 Wf~~~~d~~~i~~~l~~l 124 (127)
T 2qkl_A 107 WMFDPNDMSRIFNIVKES 124 (127)
T ss_dssp EESSTHHHHHHHHHHHHH
T ss_pred EEEchHHHHHHHHHHHHH
Confidence 999999999999888765
No 74
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=75.54 E-value=1.2e+02 Score=36.37 Aligned_cols=218 Identities=8% Similarity=0.053 Sum_probs=121.3
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhh-ccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHH
Q 006478 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK-SLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILI 385 (643)
Q Consensus 307 ~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak-~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~ 385 (643)
+.-+..|+..+.++ +.+-|+.+...|.+...-.. .+.+... ..+++.+-..|.+++..+|.+|...|.
T Consensus 5 ~~~l~~lL~~l~s~--d~~~R~~A~~~L~~~l~~~~~~~~~~~~---------~~il~~Ll~~L~d~~~~vR~~A~~~L~ 73 (1230)
T 1u6g_C 5 SYHISNLLEKMTSS--DKDFRFMATNDLMTELQKDSIKLDDDSE---------RKVVKMILKLLEDKNGEVQNLAVKCLG 73 (1230)
T ss_dssp CHHHHHHHHHTTCS--SHHHHHHHHHHHHHHTSSSCCSCCTTHH---------HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HhHHHHHHHhcCCC--CHhHHHHHHHHHHHHHcccccCCChhHH---------HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 34577888888775 45677777766666432211 1111111 123444555677899999999999998
Q ss_pred HHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHH
Q 006478 386 LFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVIT 465 (643)
Q Consensus 386 ~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~ 465 (643)
.+++.-+.-.+. .++..|++.+ .+.++.++.....+|..+..--.-.. ....+...+++..++.|++-+.
T Consensus 74 ~l~~~~~~~~~~--------~i~~~Ll~~l-~d~~~~vR~~a~~~L~~i~~~l~~~~-~~~~~~~~~~~~llp~L~~~l~ 143 (1230)
T 1u6g_C 74 PLVSKVKEYQVE--------TIVDTLCTNM-LSDKEQLRDISSIGLKTVIGELPPAS-SGSALAANVCKKITGRLTSAIA 143 (1230)
T ss_dssp HHHTTSCHHHHH--------HHHHHHHHHT-TCSSSHHHHHHHHHHHHHHHHCC------CCTHHHHHHHHHHHHHHHHS
T ss_pred HHHHhCCHHHHH--------HHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhCCCcc-cccchHHHHHHHHHHHHHHHHc
Confidence 888766552222 2455566654 45566777767777776653111000 0012344455666666665442
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHh
Q 006478 466 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (643)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii 545 (643)
+. .....-...++.|+-++...+-.+..|+ ..++..++..+...+..++-.|++++..++
T Consensus 144 ~~------------------~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 144 KQ------------------EDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLV 203 (1230)
T ss_dssp CC------------------SCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred CC------------------CchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 10 0112223344555544443333333332 567788888888778889999999999987
Q ss_pred cCC-hhHHHHHHHhhCChHHHHHHHhH
Q 006478 546 SRH-DEHLINHFVKNNLLKPIVDAFVA 571 (643)
Q Consensus 546 ~l~-D~fy~ryiik~~lf~Pv~~~~~~ 571 (643)
..- +++ -..++.+++..+..
T Consensus 204 ~~~~~~~------~~~~l~~l~~~L~~ 224 (1230)
T 1u6g_C 204 MSCGNIV------FVDLIEHLLSELSK 224 (1230)
T ss_dssp TTC----------CTTHHHHHHHHHHH
T ss_pred HhcCHHH------HHHHHHHHHHHhcc
Confidence 653 333 22345555555544
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=75.11 E-value=59 Score=31.01 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=102.6
Q ss_pred HHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhh
Q 006478 367 DALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRD 446 (643)
Q Consensus 367 ~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d 446 (643)
..+.+.+-..|..|.+-|..+++..|... ...-..++..|.+.+-.|.+..++...+.++..|... + +.
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~~~-----~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~--l----~~ 90 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPKLE-----NGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG--L----AK 90 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSSBC-----CCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--H----GG
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCC-----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--H----hh
Confidence 34578888999999999999888755422 1111235566666554588998888888888777621 1 11
Q ss_pred HHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHh
Q 006478 447 TIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLT 526 (643)
Q Consensus 447 ~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll 526 (643)
.| ..+++.++.+++....+ .++.+-...++.|.-|+...++ +.++..+...+
T Consensus 91 ----~~-~~~~~~ilp~ll~~l~d---------------~~~~vr~~a~~aL~~~~~~~~~--------~~ll~~l~~~l 142 (242)
T 2qk2_A 91 ----RF-SNYASACVPSLLEKFKE---------------KKPNVVTALREAIDAIYASTSL--------EAQQESIVESL 142 (242)
T ss_dssp ----GG-HHHHHHHHHHHHHGGGC---------------CCHHHHHHHHHHHHHHHTTSCH--------HHHHHHHHHHT
T ss_pred ----hH-HHHHHHHHHHHHHHHcC---------------CCHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHH
Confidence 12 34666677777663110 1233444556666666654331 45778888888
Q ss_pred hcccchhhHHHHHHHHHHhcCC--hhHHHHHHHhhCChHHHHHHH
Q 006478 527 RRREKYLVVAAVRFVRTILSRH--DEHLINHFVKNNLLKPIVDAF 569 (643)
Q Consensus 527 ~~~~k~L~LaAlRf~R~ii~l~--D~fy~ryiik~~lf~Pv~~~~ 569 (643)
..++..++..++.++..++..- +.+...|+ ..+...++..+
T Consensus 143 ~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l 185 (242)
T 2qk2_A 143 SNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTL 185 (242)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHh
Confidence 8888899999999999988773 33445555 24555555555
No 76
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=72.55 E-value=58 Score=35.96 Aligned_cols=83 Identities=12% Similarity=0.124 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHhc-------CcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCC
Q 006478 347 VQQLRLFRDLMNE-------GIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDF 419 (643)
Q Consensus 347 ~~r~~~f~~L~~~-------gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~ 419 (643)
.-|..-.++|.+- .+.+.+..++.++++.+|..|+--+..+...+|..+.. ..++..|.+ ++.|.
T Consensus 101 ~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~-------~~~~~~l~~-lL~d~ 172 (591)
T 2vgl_B 101 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED-------QGFLDSLRD-LIADS 172 (591)
T ss_dssp HHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH-------HHHHHHHHH-TTSCS
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc-------ccHHHHHHH-HhCCC
Confidence 3344445555443 24455777888999999999999999999999987753 123444444 56899
Q ss_pred ChhHHHHHHHHHHHhcCC
Q 006478 420 GEDMHCQFLEILRSLLDS 437 (643)
Q Consensus 420 ~~gl~~Q~~e~lk~LLDp 437 (643)
+++++.....+|..+...
T Consensus 173 d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 173 NPMVVANAVAALSEISES 190 (591)
T ss_dssp CHHHHHHHHHHHHHHTTS
T ss_pred ChhHHHHHHHHHHHHHhh
Confidence 999999998888887643
No 77
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=70.36 E-value=90 Score=35.02 Aligned_cols=159 Identities=9% Similarity=0.039 Sum_probs=107.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHhcCCCcccccccCCCCcccCC
Q 006478 408 LGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITASCPQEGIAQSASSGGRVEST 486 (643)
Q Consensus 408 l~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY-~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~ 486 (643)
+..|+..|-...+++++.+...||.-|...... ....+-..+- ...++.|++-|.. .
T Consensus 310 v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~---~~~~~~~~v~~~~glp~Lv~LL~s-------------------~ 367 (584)
T 3l6x_A 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWT---YGRYIRSALRQEKALSAIADLLTN-------------------E 367 (584)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH---HHHHHHHHHTSHHHHHHHHHGGGC-------------------S
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc---ccHHHHHHHHHcCcHHHHHHHHcC-------------------C
Confidence 456677776667899999999999999643221 0011111221 2345555553321 2
Q ss_pred cHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhccc--------chhhHHHHHHHHHHhcCChhHHHHHHHh
Q 006478 487 KPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRRE--------KYLVVAAVRFVRTILSRHDEHLINHFVK 558 (643)
Q Consensus 487 ~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~--------k~L~LaAlRf~R~ii~l~D~fy~ryiik 558 (643)
...+....|-.|+.+...+. .+..| ..+.+.++++|+.+.+ .-.+.+|++.+.+++..+++ ..+.|+.
T Consensus 368 ~~~v~~~A~~aL~nLs~~~~--~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~-~~~~I~~ 443 (584)
T 3l6x_A 368 HERVVKAASGALRNLAVDAR--NKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE-AAKKLRE 443 (584)
T ss_dssp CHHHHHHHHHHHHHHHTTCS--CHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCChh--HHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH-HHHHHHH
Confidence 34567778888999988765 45444 6788899999887653 23467899999999866555 6889999
Q ss_pred hCChHHHHHHHhHhCCCCcchHHHHHHHHHHHHh
Q 006478 559 NNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 592 (643)
Q Consensus 559 ~~lf~Pv~~~~~~n~~r~NLlnSa~Lelfe~Ir~ 592 (643)
.+.+.+++.++.......+..-.|+.=|......
T Consensus 444 ~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 9999999999865334667777888777766543
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=69.27 E-value=88 Score=30.55 Aligned_cols=184 Identities=10% Similarity=0.122 Sum_probs=108.8
Q ss_pred cHHhHHHHHHHHHH-HHHhhhccCh-hhHHHHHHHHHhcCcHHHHHHHH-cCCChhhHHhhHHHHHHHHhcCh-HHHH-H
Q 006478 323 LEESKKNLVHFLHE-FCGLSKSLQM-VQQLRLFRDLMNEGIFDIVTDAL-QSQDKKLVLTGTDILILFLNQDP-NLLR-S 397 (643)
Q Consensus 323 ~~~~r~d~v~fL~e-~c~~ak~lq~-~~r~~~f~~L~~~gll~vi~~~L-~~~d~~ir~~~tdIl~~iie~dp-~lvR-~ 397 (643)
.-..|++++.=|.. ++.=+..+.. ... | ..+++.+..++ .+.+..++..|+..+..+.+.=. ..+. .
T Consensus 29 ~w~eRk~al~~L~~~~~~~~~~i~~~~~~---~-----~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVLSQTKKLKSTSQN---Y-----SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp SHHHHHHHHHHHHHHTGGGCCCBCCTTCC---C-----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCccccCccc---H-----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 44677887765555 5532222321 000 0 13456677788 78899999999999988774322 1222 3
Q ss_pred HHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCccccccc
Q 006478 398 YVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSA 477 (643)
Q Consensus 398 ~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~ 477 (643)
|. ..++..+++.+ .|+.+.++..+..++..++..-+-.... .+++.++..|+....
T Consensus 101 y~-----~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~----------~~l~~ll~~l~~~l~-------- 156 (249)
T 2qk1_A 101 YV-----SLVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASS----------GRNEDMLKDILEHMK-------- 156 (249)
T ss_dssp HH-----HHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTT----------CTTHHHHHHHHHHTT--------
T ss_pred HH-----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccC----------CcHHHHHHHHHHHHc--------
Confidence 32 22555666655 6777888888888888777532111010 002233333333210
Q ss_pred CCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhH--HhhccHHHHHHHHhhcccchhhHHHHHHHHHHh
Q 006478 478 SSGGRVESTKPEILSNICELLCFCVLHHPYRIKCN--FLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (643)
Q Consensus 478 ~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~--il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii 545 (643)
..++++-...+..|+.|+.+.+-..+.+ .+...++..+..++.-.++-+|=+|..++-++.
T Consensus 157 -------~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 157 -------HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp -------CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred -------CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1133455567888888888876432222 123678888888998888899999999988853
No 79
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=68.67 E-value=95 Score=34.74 Aligned_cols=67 Identities=9% Similarity=0.186 Sum_probs=43.3
Q ss_pred HHHHHHcCCChhhHHhhHHHHHHHHhcChH--HHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCC
Q 006478 364 IVTDALQSQDKKLVLTGTDILILFLNQDPN--LLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT 439 (643)
Q Consensus 364 vi~~~L~~~d~~ir~~~tdIl~~iie~dp~--lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~ 439 (643)
.+...|.+.++.+|-.|.+.+..++...|. .+.. ....++..+-.+.|..++....++|..|.++.|
T Consensus 333 ~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~---------~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N 401 (621)
T 2vgl_A 333 QLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKT---------HIETVINALKTERDVSVRQRAVDLLYAMCDRSN 401 (621)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHT---------THHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHH---------HHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh
Confidence 344445667777888888888777777653 2211 122333434338889999988899888876644
No 80
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=67.83 E-value=55 Score=32.19 Aligned_cols=114 Identities=12% Similarity=0.080 Sum_probs=81.0
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHh
Q 006478 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (643)
Q Consensus 310 L~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie 389 (643)
++.+...+.+++...+.+..+...|+-+|.- .++.|. .+++.|.++.+-..|.+++..++..|+-.|..+.-
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~----~~~~r~----~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQ----KSEARK----RVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH----CHHHHH----HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcC----CcHHHH----HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 5667777777665556677777777765531 122232 35688999999999999999999999999998887
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 006478 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 390 ~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LL 435 (643)
.++. -|..+.+..+ +..|++.|-...+..++.+.+.+|..|=
T Consensus 82 ~~~~-nk~~I~~~Ga---I~~Lv~lL~~~~~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 82 EDND-NKLEVAELNG---VPRLLQVLKQTRDLETKKQITGLLWNLS 123 (233)
T ss_dssp TCHH-HHHHHHHTTH---HHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHcCC---HHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 6665 3555655433 3345555544568899999999988883
No 81
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=60.68 E-value=31 Score=33.89 Aligned_cols=77 Identities=5% Similarity=0.201 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHH
Q 006478 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 386 (643)
Q Consensus 307 ~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~ 386 (643)
+..+++|+..++++ +..-|...+.||..++.-++.-. . -|...+...+++++..++.++++.+|.+|++.+..
T Consensus 145 ~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~~~~~~--~---~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~ 217 (249)
T 2qk1_A 145 EDMLKDILEHMKHK--TPQIRMECTQLFNASMKEEKDGY--S---TLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAI 217 (249)
T ss_dssp HHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCCSCS--H---HHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHcCCcc--h---hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 36889999998876 45788999999999988766421 1 12223335788999999999999999999999987
Q ss_pred HHhc
Q 006478 387 FLNQ 390 (643)
Q Consensus 387 iie~ 390 (643)
+..+
T Consensus 218 i~~~ 221 (249)
T 2qk1_A 218 LIKI 221 (249)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6533
No 82
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=59.46 E-value=94 Score=37.27 Aligned_cols=199 Identities=15% Similarity=0.145 Sum_probs=114.8
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHc-CCChhhHHhhHHHHHH
Q 006478 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQ-SQDKKLVLTGTDILIL 386 (643)
Q Consensus 308 ~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~-~~d~~ir~~~tdIl~~ 386 (643)
.+++.|...+.+++. .-|.-+..-|.+++. .+.+.....-+..-.-..+++.+-.++. +++..+|..|.+++..
T Consensus 86 ~i~~~Ll~~l~d~~~--~vR~~a~~~L~~i~~---~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKE--QLRDISSIGLKTVIG---ELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp HHHHHHHHHTTCSSS--HHHHHHHHHHHHHHH---HCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcH--HHHHHHHHHHHHHHH---hCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 355666666666544 335555655665543 4443210000000112246677777887 4788899999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHh
Q 006478 387 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITA 466 (643)
Q Consensus 387 iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~ 466 (643)
+++..+..+-.|. ..++..|...| .+.++.++.+...++..+...-. +. ||+..++.|+..|..
T Consensus 161 ~~~~~~~~l~~~~-----~~ll~~l~~~L-~~~~~~vR~~a~~al~~l~~~~~------~~----~~~~~l~~l~~~L~~ 224 (1230)
T 1u6g_C 161 MLSRQGGLLVNFH-----PSILTCLLPQL-TSPRLAVRKRTIIALGHLVMSCG------NI----VFVDLIEHLLSELSK 224 (1230)
T ss_dssp HHHHTCSSCTTTH-----HHHHHHHGGGG-GCSSHHHHHHHHHHHHHHTTTC--------------CTTHHHHHHHHHHH
T ss_pred HHHHhHhHHHHHH-----HHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHhcC------HH----HHHHHHHHHHHHhcc
Confidence 8876554222211 12444444443 56778999999999999875321 11 366677888777765
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhcCchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhc
Q 006478 467 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 546 (643)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fcv~~H~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~ 546 (643)
... ...+.. .|+.+...+...+.+++.|+ ..++.-++..+...+.-++-+|+.++-.++.
T Consensus 225 ~~~-----------~~~r~~-------a~~~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 225 NDS-----------MSTTRT-------YIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp TCS-----------SCSCTT-------HHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred CCc-----------hhHHHH-------HHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 210 011111 24555555555555554433 4677778887776677788888888887765
Q ss_pred C
Q 006478 547 R 547 (643)
Q Consensus 547 l 547 (643)
.
T Consensus 285 ~ 285 (1230)
T 1u6g_C 285 R 285 (1230)
T ss_dssp C
T ss_pred H
Confidence 4
No 83
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=55.67 E-value=1.2e+02 Score=27.51 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=14.4
Q ss_pred cHHHHHHHHcCCChhhHHhhHHHH
Q 006478 361 IFDIVTDALQSQDKKLVLTGTDIL 384 (643)
Q Consensus 361 ll~vi~~~L~~~d~~ir~~~tdIl 384 (643)
.++.+..+|.++++.+|..++..|
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVAL 100 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 556666666666666665555443
No 84
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=43.52 E-value=63 Score=34.54 Aligned_cols=71 Identities=21% Similarity=0.365 Sum_probs=41.9
Q ss_pred HHHHHhhcCHHHHHHHHHHh-C---CCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCC
Q 006478 298 YVVSLLKDDSTFIQELFARL-R---SPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQD 373 (643)
Q Consensus 298 eIV~~Lq~d~~fL~eLf~~l-~---~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d 373 (643)
+|++++..|++.-..++.-+ + -.+.+.+ +.||.|+-.+...+++.+=...- .-+|..+..++.++.
T Consensus 282 cv~qf~eKDp~L~~~vi~~LLk~WP~tns~Ke-----vlFL~eleeiLe~~~~~~f~~i~-----~~lF~~la~ci~S~h 351 (392)
T 2jak_A 282 CVVQFLEKDSTLTEPVVMALLKYWPKTHSPKE-----VMFLNELEEILDVIEPSEFVKIM-----EPLFRQLAKCVSSPH 351 (392)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTH-----HHHHHHHHHHHHTCCHHHHHHHH-----HHHHHHHHHHHTCSS
T ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCchHH-----HHHHHHHHHHHHhCCHHHHHHHH-----HHHHHHHHHHHcCCc
Confidence 78888988876544444322 1 1222222 88999998888777654322211 234566677777766
Q ss_pred hhhHH
Q 006478 374 KKLVL 378 (643)
Q Consensus 374 ~~ir~ 378 (643)
-++--
T Consensus 352 fqVAE 356 (392)
T 2jak_A 352 FQVAE 356 (392)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 85
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=41.98 E-value=2.2e+02 Score=27.66 Aligned_cols=184 Identities=10% Similarity=-0.006 Sum_probs=103.0
Q ss_pred HhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChH-H-HHHHHHhc
Q 006478 325 ESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPN-L-LRSYVVRQ 402 (643)
Q Consensus 325 ~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~-l-vR~~i~~q 402 (643)
..|.+++.-|.+.+.-.+..... ...+.. -..+...++.++.|.+..+...|.+++..+++.-.. . .+... ..
T Consensus 24 K~R~eale~l~~~~~~~~~~~~~--~~~~~~--~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~-~~ 98 (278)
T 4ffb_C 24 KARLEAYKELNQLFRNSVGDISR--DDNIQI--YWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHN-IT 98 (278)
T ss_dssp HHHHHHHHHHHHHHHTC------------CC--TTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHH-HH
T ss_pred HHHHHHHHHHHHHHhhCcccccc--hhHHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchh-HH
Confidence 45778887666666533322211 111110 123566778888999999999999999888875322 1 12111 11
Q ss_pred CCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCc
Q 006478 403 EGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGR 482 (643)
Q Consensus 403 ~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~ 482 (643)
.-..++..|++-.+.+..++++....+++-.+...... ...++..+....
T Consensus 99 ~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~----------------~~~~~e~l~~~l-------------- 148 (278)
T 4ffb_C 99 LISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS----------------ITQSVELVIPFF-------------- 148 (278)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS----------------SHHHHHHHGGGG--------------
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc----------------HHHHHHHHHHHH--------------
Confidence 11234455565556677888877777766555432211 112223332210
Q ss_pred ccCCcHHHHHHHHHHHHHHHhhcCchhhh-HHhhccHHHHHHHHhhcccchhhHHHHHHHHHH
Q 006478 483 VESTKPEILSNICELLCFCVLHHPYRIKC-NFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTI 544 (643)
Q Consensus 483 ~~~~~~~ll~~l~eLL~fcv~~H~~r~k~-~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~i 544 (643)
....+.+-.-.+..|+-|++++....-. --.-..++.-+..++..+++-+|=+|..++-.+
T Consensus 149 -~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 149 -EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp -GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred -hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 1123455566788888888887664321 111233445566788889999999999998774
No 86
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=40.52 E-value=4e+02 Score=29.10 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=34.5
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHh
Q 006478 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (643)
Q Consensus 310 L~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie 389 (643)
+.++-..+++++ .++|++++.=+--+..++... ..|++.+++ .+++++..+|.+|-=-+..+.+
T Consensus 15 ~~~i~~~L~~~~--~~~k~~~~~kli~~~~~G~d~-------------~~~~~~vi~-l~~s~~~~~Krl~yl~l~~~~~ 78 (591)
T 2vgl_B 15 IFELKAELNNEK--KEKRKEAVKKVIAAMTVGKDV-------------SSLFPDVVN-CMQTDNLELKKLVYLYLMNYAK 78 (591)
T ss_dssp HHHHHHHTTSSC--HHHHHHHHHHHHHHHHTTCCC-------------GGGHHHHHH-TTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHHHCCCCh-------------HHHHHHHHH-HhCCCCHHHHHHHHHHHHHHcc
Confidence 455666666543 456666554333333222211 234455555 5667777776665544444444
Q ss_pred cChH
Q 006478 390 QDPN 393 (643)
Q Consensus 390 ~dp~ 393 (643)
.+|.
T Consensus 79 ~~~e 82 (591)
T 2vgl_B 79 SQPD 82 (591)
T ss_dssp HSHH
T ss_pred cCch
Confidence 4444
No 87
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=40.36 E-value=2.1e+02 Score=25.83 Aligned_cols=40 Identities=13% Similarity=-0.033 Sum_probs=25.7
Q ss_pred hHHHHHHHHHhc---CcHHHHHHHHcCCChhhHHhhHHHHHHH
Q 006478 348 QQLRLFRDLMNE---GIFDIVTDALQSQDKKLVLTGTDILILF 387 (643)
Q Consensus 348 ~r~~~f~~L~~~---gll~vi~~~L~~~d~~ir~~~tdIl~~i 387 (643)
-|..-..+|.+. +.++.+..+|.+++..+|..++..|..+
T Consensus 92 vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 92 VRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEI 134 (201)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 344444444433 3677777788888888888777666544
No 88
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=40.32 E-value=4.9e+02 Score=31.44 Aligned_cols=85 Identities=13% Similarity=0.176 Sum_probs=50.5
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccC
Q 006478 406 PLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVES 485 (643)
Q Consensus 406 ~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~~~~~~~~~~~~~~~~~~~~ 485 (643)
.++..++.. +. ++.++...+++|..++. ..+...++..++..|+...+..+++-.....+.. ...
T Consensus 249 ~ll~~l~~~-l~--~~~lr~~A~ecL~~i~s-~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~-----------~~e 313 (1204)
T 3a6p_A 249 KLLEILCLL-LN--EQELQLGAAECLLIAVS-RKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGG-----------LVE 313 (1204)
T ss_dssp HHHHHHHHG-GG--CTTTHHHHHHHHHHHHT-CCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCS-----------CCH
T ss_pred hHHHHHHHH-cC--CHHHHHHHHHHHHHHHh-CCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCC-----------Ccc
Confidence 467777743 33 57788889999999986 3333335556666666665666665432211100 011
Q ss_pred CcHHHHHHHHHHHHHHHhhc
Q 006478 486 TKPEILSNICELLCFCVLHH 505 (643)
Q Consensus 486 ~~~~ll~~l~eLL~fcv~~H 505 (643)
...+....+|++++-+..++
T Consensus 314 ~d~e~~k~l~~ll~~lg~~l 333 (1204)
T 3a6p_A 314 KHYVFLKRLCQVLCALGNQL 333 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 23456778888888877653
No 89
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=39.73 E-value=1.4e+02 Score=35.37 Aligned_cols=108 Identities=11% Similarity=0.105 Sum_probs=65.7
Q ss_pred CCCCCcHHhHHHHHHHHHHHHHhhhc-cC--hhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhc----
Q 006478 318 RSPTTLEESKKNLVHFLHEFCGLSKS-LQ--MVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ---- 390 (643)
Q Consensus 318 ~~~~~~~~~r~d~v~fL~e~c~~ak~-lq--~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~---- 390 (643)
.+.+..++-|.+...|++.++...-. +- ++ ..+ ..+++.+-+++++++..+..+|+.++..+++.
T Consensus 812 ~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~---~~~-----~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~ 883 (1049)
T 3m1i_C 812 KDFTEYPEHRVEFYKLLKVINEKSFAAFLELPP---AAF-----KLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERM 883 (1049)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCH---HHH-----HHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCH---HHH-----HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 34556788999999999998764321 10 11 112 24556667899999999999999888876663
Q ss_pred -ChHHHHHHHHhcCCcchHHHHHHHHhc-CCChhHHHHHHHHHHHhc
Q 006478 391 -DPNLLRSYVVRQEGIPLLGLLVKGMIT-DFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 391 -dp~lvR~~i~~q~~~~Ll~~Li~~ll~-d~~~gl~~Q~~e~lk~LL 435 (643)
++..... ..++-...++..+...+.. ....|+.. .+++|+.|+
T Consensus 884 ~~~~~~~~-f~~~~~~~l~~~~~~~l~~~~h~s~~~~-~~~~l~~l~ 928 (1049)
T 3m1i_C 884 GNVPFANE-FHKNYFFIFVSETFFVLTDSDHKSGFSK-QALLLMKLI 928 (1049)
T ss_dssp CSCHHHHH-HHHHHHHHHHHHHHHHHHSTTCGGGHHH-HHHHHHHHH
T ss_pred CChHHHHH-HHHHHHHHHHHHHHHHHhcchHhhhHHH-HHHHHHHHH
Confidence 3343333 3333344555555555553 34556643 456666654
No 90
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=39.05 E-value=2.6e+02 Score=26.64 Aligned_cols=19 Identities=0% Similarity=-0.113 Sum_probs=8.8
Q ss_pred HHHHHHHHcCCChhhHHhh
Q 006478 362 FDIVTDALQSQDKKLVLTG 380 (643)
Q Consensus 362 l~vi~~~L~~~d~~ir~~~ 380 (643)
++.+..++.+++..+|..+
T Consensus 130 ~~~L~~~l~d~~~~vR~~a 148 (280)
T 1oyz_A 130 VEQSQITAFDKSTNVRRAT 148 (280)
T ss_dssp HHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHH
Confidence 3444444455555554433
No 91
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=38.85 E-value=3.1e+02 Score=27.43 Aligned_cols=155 Identities=12% Similarity=0.132 Sum_probs=85.8
Q ss_pred cCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCC-----CCCCchh
Q 006478 370 QSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS-----YTLSGAQ 444 (643)
Q Consensus 370 ~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp-----~~~~~~e 444 (643)
-+.|-+-+..|.|.|...++.+|..+-+ .-|- ++..+. .-+.|+++-+.....++|..+++- ..|...|
T Consensus 56 fs~d~k~~~~ale~L~~~l~~~~~~~~~----~lDl-l~kw~~-lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 56 FHKDFKQHLAALDSLVRLADTSPRSLLS----NSDL-LLKWCT-LRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCHHHHHH----THHH-HHHHHH-HHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred cCCCHHHHHHHHHHHHHHhhhChHHHHH----HHHH-HHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 4567777888999998888887743211 1010 222222 122466776666666666666531 1122111
Q ss_pred hhHH----------------------HHHHHHhh-HHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHH
Q 006478 445 RDTI----------------------IEIFYEKH-LGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFC 501 (643)
Q Consensus 445 ~d~f----------------------l~~FY~~~-~~~L~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~eLL~fc 501 (643)
-..| +..++.-+ ..+++..+.... .+..+..-.-.|+.+..+
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~---------------ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL---------------KSKNARQRSECLLVIEYY 194 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG---------------GCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH---------------ccCCHHHHHHHHHHHHHH
Confidence 1112 22222211 223333333311 111233334567888888
Q ss_pred HhhcCchhhhHHhhccHH---HHHHHHhhcccchhhHHHHHHHHHHhcC-ChhH
Q 006478 502 VLHHPYRIKCNFLLNNVV---DKVLLLTRRREKYLVVAAVRFVRTILSR-HDEH 551 (643)
Q Consensus 502 v~~H~~r~k~~il~~~l~---~kv~~Ll~~~~k~L~LaAlRf~R~ii~l-~D~f 551 (643)
+..|..-- ...+ .-|+.++..++.-++=+|+.++-.|... .|.+
T Consensus 195 i~~~G~~~------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 195 ITNAGISP------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp HHHHCSGG------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHhcCCCc------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 99888751 2345 7788999999999999999999876433 4553
No 92
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=38.07 E-value=1.9e+02 Score=32.34 Aligned_cols=111 Identities=18% Similarity=0.180 Sum_probs=71.9
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHh
Q 006478 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (643)
Q Consensus 310 L~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie 389 (643)
++.|...+.++ +.+.+..+...|+.+|.- ....| ..+++.|-++.+-..|.+++..++..|+-.|..+.-
T Consensus 50 i~~LV~~L~s~--~~~~q~~Aa~~L~~La~~----~~~~k----~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 50 LPEVIAMLGFR--LDAVKSNAAAYLQHLCYR----NDKVK----TDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF 119 (584)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHTT----CHHHH----HHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHHHcC----ChHHH----HHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 66677777654 356677888887766631 12223 346788999999999999999999999999999887
Q ss_pred c-ChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 006478 390 Q-DPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 434 (643)
Q Consensus 390 ~-dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~L 434 (643)
+ ++. -|..+.+..+ +..|++.|-...+.+++.+.+.+|..|
T Consensus 120 ~~~~~-nk~~I~~~Ga---Ip~LV~LL~s~~~~~~~e~aa~aL~nL 161 (584)
T 3l6x_A 120 GRDQD-NKIAIKNCDG---VPALVRLLRKARDMDLTEVITGTLWNL 161 (584)
T ss_dssp SSCHH-HHHHHHHTTH---HHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred cCCHH-HHHHHHHcCC---HHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 6 454 4666655432 223344443334555555555544443
No 93
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=36.57 E-value=4e+02 Score=28.02 Aligned_cols=105 Identities=10% Similarity=0.107 Sum_probs=67.5
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHH
Q 006478 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (643)
Q Consensus 309 fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~ii 388 (643)
+++-+...+.++ +.+-|+.++..|-+++.. +... .....+++.+...+.+++..+|..|.+.+..+.
T Consensus 165 l~~~l~~l~~d~--~~~VR~~a~~~l~~l~~~---~~~~--------~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 165 LRQYFRNLCSDD--TPMVRRAAASKLGEFAKV---LELD--------NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231 (588)
T ss_dssp HHHHHHHHHTCS--CHHHHHHHHHHHHHHHHT---SCHH--------HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHHHHH---hcHH--------hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 344444444543 456677777777666543 3221 123567888888889999999999999998888
Q ss_pred hcChHH-HHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 006478 389 NQDPNL-LRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 389 e~dp~l-vR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LL 435 (643)
+.-+.- ... .++.. +..++.|.+..++....++|..+.
T Consensus 232 ~~~~~~~~~~--------~~~~~-l~~~~~d~~~~vR~~a~~~l~~l~ 270 (588)
T 1b3u_A 232 QLLPQEDLEA--------LVMPT-LRQAAEDKSWRVRYMVADKFTELQ 270 (588)
T ss_dssp HHSCHHHHHH--------HTHHH-HHHHHTCSSHHHHHHHHHTHHHHH
T ss_pred HhCCHHHHHH--------HHHHH-HHHHccCCCHHHHHHHHHHHHHHH
Confidence 765531 111 12333 334557788888888888877765
No 94
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=36.05 E-value=2.6e+02 Score=27.79 Aligned_cols=61 Identities=13% Similarity=0.370 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHH
Q 006478 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDI 383 (643)
Q Consensus 308 ~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdI 383 (643)
+|+++++....+ .+.+-||-++.|+.|.|. +..+.. ...++.+...+.++|+.+.-.+...
T Consensus 53 ~~l~~il~~~~~--~~~~vrk~~~~Fi~e~~~--~k~~l~-----------~~~l~~L~~Ll~d~d~~V~K~~I~~ 113 (257)
T 3gs3_A 53 EFLESVLSLAHD--SNMEVRKQVVAFVEQVCK--VKVELL-----------PHVINVVSMLLRDNSAQVIKRVIQA 113 (257)
T ss_dssp HHHHHHHGGGGC--SCHHHHHHHHHHHHHHHH--HCGGGH-----------HHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHhccC--ChHHHHHHHHHHHHHHHH--HHHHHH-----------HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 455555554333 567899999999999992 211111 1134566666776666554433333
No 95
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=35.84 E-value=79 Score=31.05 Aligned_cols=81 Identities=9% Similarity=0.028 Sum_probs=62.1
Q ss_pred CchhhhHHhhccHHHHHHHHhhcccchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHHHHHHHhHhCCCCcchHHHHHH
Q 006478 506 PYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLE 585 (643)
Q Consensus 506 ~~r~k~~il~~~l~~kv~~Ll~~~~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~Pv~~~~~~n~~r~NLlnSa~Le 585 (643)
....|..+.....+..++.++++.+.-++-.|+.-+|++-..+++ .-..|++.+-..|+++++...++ ..+...|+--
T Consensus 41 ~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~-nk~~I~~~GaI~~Lv~lL~~~~~-~~~~e~a~~a 118 (233)
T 3tt9_A 41 KSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND-NKLEVAELNGVPRLLQVLKQTRD-LETKKQITGL 118 (233)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred CcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHcCCHHHHHHHHccCCC-HHHHHHHHHH
Confidence 345677888889999999999999999999999999998765554 66788899999999999976543 2344444433
Q ss_pred HHH
Q 006478 586 LFE 588 (643)
Q Consensus 586 lfe 588 (643)
|+.
T Consensus 119 L~n 121 (233)
T 3tt9_A 119 LWN 121 (233)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 96
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=33.15 E-value=2.6e+02 Score=26.81 Aligned_cols=110 Identities=10% Similarity=0.057 Sum_probs=72.8
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHh
Q 006478 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (643)
Q Consensus 310 L~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie 389 (643)
+.++.....++....+. ...+-|+|.+.+.-+...|.+ ..+|..-|++.++.+...|..+|-+++.
T Consensus 6 ~~~~ie~AT~~~~~~~d----w~~~leicd~i~~~~~~~k~a----------~r~l~krl~~~n~~~~l~aL~Lle~~vk 71 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPD----WPSILLICDEINQKDVTPKNA----------FAAIKKKMNSPNPHSSCYSLLVLESIVK 71 (220)
T ss_dssp HHHHHHHHHCTTCSSCC----HHHHHHHHHHHHTTSSCHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcC----HHHHHHHHHhhcCCCcCHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 45566666655443222 223566787776544444443 3455666788999999999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 006478 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLD 436 (643)
Q Consensus 390 ~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLD 436 (643)
+--..++..+.+ ..+++.|++.+-...++.++..+.+.++.+-+
T Consensus 72 NcG~~f~~eva~---~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 72 NCGAPVHEEVFT---KENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HSHHHHHHHHSS---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHh---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 876666665543 33777777766556778888888887777754
No 97
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=32.79 E-value=3e+02 Score=25.35 Aligned_cols=108 Identities=6% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHh
Q 006478 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (643)
Q Consensus 310 L~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie 389 (643)
+.++..+..++....+.+--.+ ++|.+.++-+...|... .+|+.-|++.++.+...|..+|=+|+.
T Consensus 16 ~~~~IekATs~~~~~~Dw~~~l----eicD~I~~~~~~~keA~----------ral~krl~~~n~~vql~AL~LLd~~vk 81 (163)
T 1x5b_A 16 FEQDVEKATNEYNTTEDWSLIM----DICDKVGSTPNGAKDCL----------KAIMKRVNHKVPHVALQALTLLGACVA 81 (163)
T ss_dssp THHHHHHHTCTTCSSCCHHHHH----HHHHHHHHSSSHHHHHH----------HHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHH----HHHHHHhCCCccHHHHH----------HHHHHHHcCCCHHHHHHHHHHHHHHHH
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 006478 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 434 (643)
Q Consensus 390 ~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~L 434 (643)
+.-..++.-+.+.+ +++.|++++-...++.++..+.+.+..+
T Consensus 82 NcG~~Fh~evas~~---Fl~el~~l~~~~~~~~Vk~kil~li~~W 123 (163)
T 1x5b_A 82 NCGKIFHLEVCSRD---FATEVRAVIKNKAHPKVCEKLKSLMVEW 123 (163)
T ss_dssp HTCHHHHHHHTSHH---HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhhHH---HHHHHHHHHccCCCHHHHHHHHHHHHHH
No 98
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.01 E-value=2.7e+02 Score=26.98 Aligned_cols=111 Identities=9% Similarity=0.155 Sum_probs=74.0
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHH
Q 006478 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (643)
Q Consensus 309 fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~ii 388 (643)
-+.++..+..++....+. ...+-|+|.+.++=....|.+ ..+|+.-|++.++.+...|..+|-+++
T Consensus 8 ~~~~~i~kAT~~~~~~~d----w~~ileicD~I~~~~~~~k~a----------~ral~krl~~~n~~v~l~aL~LLe~~v 73 (226)
T 3zyq_A 8 TFERLLDKATSQLLLETD----WESILQICDLIRQGDTQAKYA----------VNSIKKKVNDKNPHVALYALEVMESVV 73 (226)
T ss_dssp HHHHHHHHHTCTTCSSCC----HHHHHHHHHHHHTTSSCHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcC----HHHHHHHHHHHhCCCccHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 467788888776543332 233456777766533334443 356777788999999999999999988
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 006478 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLD 436 (643)
Q Consensus 389 e~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLD 436 (643)
.+--..++.-+.+ ..+++.|.+++=...++.++..+.+.+..+=+
T Consensus 74 kNcG~~f~~eias---~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 74 KNCGQTVHDEVAN---KQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHCHHHHHHHSS---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHhhcc---HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 8877666655544 33566666655445677888888887777743
No 99
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=30.20 E-value=7e+02 Score=28.87 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=59.5
Q ss_pred HHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhh-------ccChhhHHHHHHHHHhcCcHHHHHHHHcC
Q 006478 299 VVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK-------SLQMVQQLRLFRDLMNEGIFDIVTDALQS 371 (643)
Q Consensus 299 IV~~Lq~d~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak-------~lq~~~r~~~f~~L~~~gll~vi~~~L~~ 371 (643)
-++.+++.+.|+..|...+.+++.+.+-|.-+...||..+.-.= .+.+..|..+ +..++..+. .
T Consensus 26 ~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~i-----k~~ll~~l~---~- 96 (960)
T 1wa5_C 26 NLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELI-----KKEIVPLMI---S- 96 (960)
T ss_dssp HHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHH-----HHHHHHHHH---H-
T ss_pred HHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH-----HHHHHHHHH---h-
Confidence 34456778899999999987777777778888888898875431 3555555433 222333322 2
Q ss_pred CChhhHHhhHHHHHHHHhcC-----hHHHHH
Q 006478 372 QDKKLVLTGTDILILFLNQD-----PNLLRS 397 (643)
Q Consensus 372 ~d~~ir~~~tdIl~~iie~d-----p~lvR~ 397 (643)
+.+.+|...++++..|+.+| |.++-.
T Consensus 97 ~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~ 127 (960)
T 1wa5_C 97 LPNNLQVQIGEAISSIADSDFPDRWPTLLSD 127 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCccchhHHHHH
Confidence 34788888888888888764 665554
No 100
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=29.97 E-value=4.4e+02 Score=26.53 Aligned_cols=77 Identities=16% Similarity=0.409 Sum_probs=56.4
Q ss_pred HHHHHHHH--HHHhhcCchhhhHHhhccHHHHHHHHhh--cc---cchhhHHHHHHHHHHhcCChhHHHHHHHhhCChHH
Q 006478 492 SNICELLC--FCVLHHPYRIKCNFLLNNVVDKVLLLTR--RR---EKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKP 564 (643)
Q Consensus 492 ~~l~eLL~--fcv~~H~~r~k~~il~~~l~~kv~~Ll~--~~---~k~L~LaAlRf~R~ii~l~D~fy~ryiik~~lf~P 564 (643)
..+|-.|. -||-.|+- .|..|++-+++...--.++ ++ .-+|+|++|-.+-+.|..+|.-...|+.+.+++..
T Consensus 71 nRVcnaLaLlQcvAshpe-tr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl 149 (268)
T 2fv2_A 71 NRVCNALALLQCVASHPE-TRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL 149 (268)
T ss_dssp HHHHHHHHHHHHHHHCTT-THHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHHHHHHcCcc-hhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence 44555443 36777776 5667888888766555443 33 34999999999999999999999999999997655
Q ss_pred HHHHH
Q 006478 565 IVDAF 569 (643)
Q Consensus 565 v~~~~ 569 (643)
.+..+
T Consensus 150 CLrim 154 (268)
T 2fv2_A 150 CLRIM 154 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 101
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=29.88 E-value=4.6e+02 Score=27.45 Aligned_cols=132 Identities=12% Similarity=0.194 Sum_probs=81.4
Q ss_pred HHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcC-hHHHHHHHHh-
Q 006478 324 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQD-PNLLRSYVVR- 401 (643)
Q Consensus 324 ~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~d-p~lvR~~i~~- 401 (643)
.....++++-|+.+++. +..+-.-+-..+.+..|..+|..+...+|..++|+|..+.... |.-....+.+
T Consensus 134 ~~~q~~~l~CLkalmN~--------~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~A 205 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNN--------KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEA 205 (383)
T ss_dssp HHHHHHHHHHHHHHTSS--------HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc--------hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHH
Confidence 34556677777776553 3344444555668889999999999999999999998877665 3321222221
Q ss_pred ------cCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHH
Q 006478 402 ------QEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVI 464 (643)
Q Consensus 402 ------q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl 464 (643)
..+..-+..+++.|-.+.+..++...+.-+..+++... +...|-..-+-|..-.+...+..+
T Consensus 206 l~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~-dl~~R~~lR~ef~~~Gl~~il~~l 273 (383)
T 3eg5_B 206 MTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE-ELDFRVHIRSELMRLGLHQVLQEL 273 (383)
T ss_dssp HHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCChHHHHHHH
Confidence 12344566677777655677888888888888887532 111232333334444555554443
No 102
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=29.71 E-value=2.5e+02 Score=29.00 Aligned_cols=75 Identities=17% Similarity=0.292 Sum_probs=50.2
Q ss_pred HHHHHHHHH----Hh-CCCCCcHHhHHHHHHHHHHHHHhhh----ccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhH
Q 006478 307 STFIQELFA----RL-RSPTTLEESKKNLVHFLHEFCGLSK----SLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLV 377 (643)
Q Consensus 307 ~~fL~eLf~----~l-~~~~~~~~~r~d~v~fL~e~c~~ak----~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir 377 (643)
+..+..+|. .. +|-+.-+|-|..--.||+.++..+= ++.++ + |+ .+++.|-||++|++..+-
T Consensus 114 p~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~-~---fk-----lvidsiiWa~kH~~r~V~ 184 (321)
T 1w9c_A 114 PQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPT-Q---FK-----LVLDSIIWAFKHTMRNVA 184 (321)
T ss_dssp HHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHH-H---HH-----HHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHH-H---HH-----HHHHHHHHHcCCCCchHH
Confidence 345555663 12 3444567899999999999886541 12222 1 22 246678899999999999
Q ss_pred HhhHHHHHHHHhc
Q 006478 378 LTGTDILILFLNQ 390 (643)
Q Consensus 378 ~~~tdIl~~iie~ 390 (643)
..|.+|+..+++.
T Consensus 185 e~gL~il~~ll~n 197 (321)
T 1w9c_A 185 DTGLQILFTLLQN 197 (321)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888766544
No 103
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=29.06 E-value=3.9e+02 Score=25.64 Aligned_cols=134 Identities=10% Similarity=0.152 Sum_probs=83.3
Q ss_pred HHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhcCh-HH----HHHH
Q 006478 324 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDP-NL----LRSY 398 (643)
Q Consensus 324 ~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp-~l----vR~~ 398 (643)
.+...++++-|+.+++. +..+-.-+-..+.+..|..+|..+...+|..++|+|..+..... .. |-++
T Consensus 68 ~~~~~~~l~CLkalmn~--------~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~A 139 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNN--------KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEA 139 (233)
T ss_dssp HHHHHHHHHHHHHHTSS--------HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--------hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHH
Confidence 34455667766666542 34444445556788899999999999999999999987666543 22 2222
Q ss_pred HHh---cCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHh
Q 006478 399 VVR---QEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITA 466 (643)
Q Consensus 399 i~~---q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LLDp~~~~~~e~d~fl~~FY~~~~~~L~~pl~~ 466 (643)
+-. ..+..-+..+++.+-.+.+...+...+.-+..|++... +...|-..-+-|..-.+...++.+-.
T Consensus 140 l~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~-dl~~R~~lR~ef~~~Gl~~il~~l~~ 209 (233)
T 2f31_A 140 MTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE-ELDFRVHIRSELMRLGLHQVLQELRE 209 (233)
T ss_dssp HHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCChHHHHHHHhc
Confidence 111 12334455677777656677788888899999998643 11233333334555566666665543
No 104
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=27.25 E-value=4.9e+02 Score=27.49 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=43.8
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHH
Q 006478 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (643)
Q Consensus 308 ~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~i 387 (643)
+||+++++...++ +.+-|+-++.||.|-|.- ..+.. --.++++...|.++|+.+.-.++....++
T Consensus 63 ~fl~~il~f~~d~--~~~vRk~~a~FieEa~~~--~~el~-----------~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 63 NFLDEIIAFQADK--SIEVRKFVIGFIEEACKR--DIELL-----------LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGHHHHHGGGGCS--CHHHHHHHHHHHHHHHHH--CGGGH-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC--cHHHHHHHHHHHHHHHHH--HHHHH-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5777777765554 568899999999999962 11111 11345666677777776655444444443
Q ss_pred HhcChHHHH
Q 006478 388 LNQDPNLLR 396 (643)
Q Consensus 388 ie~dp~lvR 396 (643)
- |..+|
T Consensus 128 Y---pl~f~ 133 (386)
T 3o2t_A 128 Y---KVALQ 133 (386)
T ss_dssp H---HHHHH
T ss_pred H---HHHHH
Confidence 2 55555
No 105
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=25.96 E-value=3.7e+02 Score=26.85 Aligned_cols=91 Identities=12% Similarity=0.206 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhh-------------hccChhhHHHHHHHH---H-hcC-----cH--
Q 006478 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-------------KSLQMVQQLRLFRDL---M-NEG-----IF-- 362 (643)
Q Consensus 307 ~~fL~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~a-------------k~lq~~~r~~~f~~L---~-~~g-----ll-- 362 (643)
..|++-|..++.++.. .-|..+...++.+|.++ |+=..-.|.+....+ + .+| .+
T Consensus 131 ~~~lP~LveKlGd~k~--~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~ 208 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKD--NMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSV 208 (266)
T ss_dssp HHHHHHHHHGGGCSSH--HHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCH
T ss_pred HHHHHHHHHHhCCChH--HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 3688888888876542 23444444445554432 111123343333222 1 122 23
Q ss_pred -HHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHH
Q 006478 363 -DIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYV 399 (643)
Q Consensus 363 -~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i 399 (643)
+.+...+.+.|..+|.+|...++.+-.|--.-|+.++
T Consensus 209 ~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 209 EKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp HHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5555555666666666666666555554444455443
No 106
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=25.24 E-value=4.1e+02 Score=24.58 Aligned_cols=110 Identities=15% Similarity=0.235 Sum_probs=74.0
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHh
Q 006478 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (643)
Q Consensus 310 L~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie 389 (643)
+.++..+..++....+. ...+-++|.+.++-....|.. ..+|+.-|++.++.+...|..+|=+|+.
T Consensus 14 ~~~~IekATs~~l~~~D----w~~ileicD~I~~~~~~~k~A----------~ral~krl~~~n~~vql~AL~LLd~~vk 79 (171)
T 1juq_A 14 LESWLNKATNPSNRQED----WEYIIGFCDQINKELEGPQIA----------VRLLAHKIQSPQEWEALQALTVLEACMK 79 (171)
T ss_dssp HHHHHHHHTCTTCSSCC----HHHHHHHHHHHHHSTTHHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcC----HHHHHHHHHHHHcCCccHHHH----------HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 55666667665543332 234458888877665555554 3567777889999999999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhc-----CCChhHHHHHHHHHHHhcC
Q 006478 390 QDPNLLRSYVVRQEGIPLLGLLVKGMIT-----DFGEDMHCQFLEILRSLLD 436 (643)
Q Consensus 390 ~dp~lvR~~i~~q~~~~Ll~~Li~~ll~-----d~~~gl~~Q~~e~lk~LLD 436 (643)
+.-..++.-+.+ ..+++.|++.+-. ..+..++..+.+.+..+=+
T Consensus 80 NCG~~Fh~evas---~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 80 NCGRRFHNEVGK---FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HSHHHHHHHHTS---HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHhh---HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 876666655443 4577788876632 2456777777777776643
No 107
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=25.21 E-value=3.8e+02 Score=24.19 Aligned_cols=91 Identities=13% Similarity=0.016 Sum_probs=48.4
Q ss_pred ccChhhHHHHHHHHHhc---CcHHHHHHHHcCCChhhHHhhHHHHHHH------------HhcChHHHHHHHHh----cC
Q 006478 343 SLQMVQQLRLFRDLMNE---GIFDIVTDALQSQDKKLVLTGTDILILF------------LNQDPNLLRSYVVR----QE 403 (643)
Q Consensus 343 ~lq~~~r~~~f~~L~~~---gll~vi~~~L~~~d~~ir~~~tdIl~~i------------ie~dp~lvR~~i~~----q~ 403 (643)
+=.+..|..-...|... +.++.+...|.+++..+|..+...|..+ +.+.-..+|..... -.
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33455566555666544 4678888888888888887766555433 22222223433322 11
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 006478 404 GIPLLGLLVKGMITDFGEDMHCQFLEILRSL 434 (643)
Q Consensus 404 ~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~L 434 (643)
+...+..|++ ++.+.++.++.....+|..+
T Consensus 110 ~~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 110 DERAVEPLIK-ALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp CGGGHHHHHH-HTTCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-HHhCCCHHHHHHHHHHHHHc
Confidence 2223444444 33555666666555555555
No 108
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=25.06 E-value=1.2e+02 Score=31.71 Aligned_cols=65 Identities=8% Similarity=0.051 Sum_probs=47.1
Q ss_pred cHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 006478 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 361 ll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LL 435 (643)
+.+-++.+|.+.++.+|.+|+=-..-++..+|.+++.+ ++.+ ..+++|++++++.....+|..+-
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~---------~~~l-~~ll~d~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRW---------VNEA-QEAASSDNIMVQYHALGLLYHVR 204 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTT---------HHHH-HHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHH---------HHHH-HHHhcCCCccHHHHHHHHHHHHH
Confidence 45567888999999999988766778899999988753 3333 44568889888765555554443
No 109
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=24.25 E-value=4e+02 Score=24.07 Aligned_cols=108 Identities=18% Similarity=0.181 Sum_probs=70.6
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhc
Q 006478 311 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 390 (643)
Q Consensus 311 ~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~ 390 (643)
.++..+..++....+.+ ..+-++|.+.++-+...|.. ..+|+.-|++.++.+...|..+|=+|+.+
T Consensus 3 ~~~iekATs~~l~~~dw----~~~leicD~I~~~~~~~k~a----------~rai~krl~~~n~~vql~AL~LLe~~vkN 68 (148)
T 1mhq_A 3 ELWLNKATDPSMSEQDW----SAIQNFCEQVNTDPNGPTHA----------PWLLAHKIQSPQEKEALYALTVLEMCMNH 68 (148)
T ss_dssp HHHHHHHHCTTCSSCCH----HHHHHHHHHHHHSSHHHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcCH----HHHHHHHHHHHcCCccHHHH----------HHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 34555555544332222 33458888877665555554 35666777899999999999999999988
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHhc-----CCChhHHHHHHHHHHHhc
Q 006478 391 DPNLLRSYVVRQEGIPLLGLLVKGMIT-----DFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 391 dp~lvR~~i~~q~~~~Ll~~Li~~ll~-----d~~~gl~~Q~~e~lk~LL 435 (643)
.-..++..+.+ ..+++.|++.+-. ..++.++..+.+.+..+=
T Consensus 69 CG~~fh~evas---~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 69 CGEKFHSEVAK---FRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp SCHHHHHHHTS---HHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhh---HHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 76666665543 3577777775542 146677777777776664
No 110
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=22.21 E-value=4.2e+02 Score=23.58 Aligned_cols=107 Identities=6% Similarity=0.046 Sum_probs=69.2
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCcHHHHHHHHcCCChhhHHhhHHHHHHHHhc
Q 006478 311 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 390 (643)
Q Consensus 311 ~eLf~~l~~~~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~gll~vi~~~L~~~d~~ir~~~tdIl~~iie~ 390 (643)
.++..+..++....+. ...+-|+|.+.++-+...|.. ..+|+.-|++.++.+...|..+|-+|+.+
T Consensus 7 d~~iekAT~~~l~~~d----w~~ileicD~I~~~~~~~k~a----------~rai~Krl~~~n~~~ql~AL~LLe~~vkN 72 (140)
T 3ldz_A 7 DQDVEKATSEMNTAED----WGLILDICDKVGQSRTGPKDC----------LRSIMRRVNHKDPHVAMQALTLLGACVSN 72 (140)
T ss_dssp HHHHHHHTCTTSSSCC----HHHHHHHHHHHTTSTTHHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcC----HHHHHHHHHHHHCCCcCHHHH----------HHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 4555666665433222 345677888887655455544 35666677888888888888899888888
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 006478 391 DPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 391 dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LL 435 (643)
--..++.-+.+ ..+++.|++.+ ...++.++..+.+.+..+=
T Consensus 73 cG~~f~~evas---~~Fl~el~~l~-~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 73 CGKIFHLEVCS---RDFASEVSNVL-NKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp SCHHHHHHHSS---HHHHHHHHHHH-HHSCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhh---HHHHHHHHHHh-ccCCHHHHHHHHHHHHHHH
Confidence 76666654433 23666666544 5567777777777666553
No 111
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=21.79 E-value=2.5e+02 Score=32.60 Aligned_cols=102 Identities=9% Similarity=0.142 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhhhccChhhHHHHHHHHHhc-CcHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHH-HHHHHhcCC
Q 006478 327 KKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNE-GIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLL-RSYVVRQEG 404 (643)
Q Consensus 327 r~d~v~fL~e~c~~ak~lq~~~r~~~f~~L~~~-gll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lv-R~~i~~q~~ 404 (643)
+.++++=|-.++....+-. ...=+.+++. |.++.|...|.+++..+|.+|++.+..++. +|..+ ..+ +..+.
T Consensus 576 ~feAL~ALTNLAs~~~n~~----E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~-~~~~~ 649 (778)
T 3opb_A 576 NYEALLALTNLASSETSDG----EEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKF-FNLEN 649 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHH----HHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGT-SCCSS
T ss_pred HHHHHHHHHHHhcCCcccc----hHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHH-HhhcC
Confidence 6666655555554321100 1112557775 999999999999999999999999999996 55532 232 21111
Q ss_pred -cc--hHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 006478 405 -IP--LLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (643)
Q Consensus 405 -~~--Ll~~Li~~ll~d~~~gl~~Q~~e~lk~LL 435 (643)
.. =+..|+..+ ...|.+.+.....||-.|-
T Consensus 650 ~~~~~rL~lLV~Ll-~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 650 PQSLRNFNILVKLL-QLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHH
T ss_pred chhhccHHHHHHHH-cCCCHHHHHHHHHHHHHhc
Confidence 11 156677655 5678888888888888773
No 112
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=20.05 E-value=2.2e+02 Score=24.15 Aligned_cols=74 Identities=7% Similarity=-0.179 Sum_probs=36.9
Q ss_pred ccChhhHHHHHHHHHhcC---cHHHHHHHHcCCChhhHHhhHHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcCC
Q 006478 343 SLQMVQQLRLFRDLMNEG---IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDF 419 (643)
Q Consensus 343 ~lq~~~r~~~f~~L~~~g---ll~vi~~~L~~~d~~ir~~~tdIl~~iie~dp~lvR~~i~~q~~~~Ll~~Li~~ll~d~ 419 (643)
+-.+.-|......|.+.| .++.+..+|.+++..+|..++..|..+- ++ .-+..|++.+ .+.
T Consensus 53 d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~~-------------~a~~~L~~~l-~d~ 116 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIG--GE-------------RVRAAMEKLA-ETG 116 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC--SH-------------HHHHHHHHHT-TSC
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cH-------------HHHHHHHHHH-hCC
Confidence 333444554455554443 3444444555555555555555544332 11 1233444433 567
Q ss_pred ChhHHHHHHHHHH
Q 006478 420 GEDMHCQFLEILR 432 (643)
Q Consensus 420 ~~gl~~Q~~e~lk 432 (643)
++.++.....+|.
T Consensus 117 ~~~vr~~A~~aL~ 129 (131)
T 1te4_A 117 TGFARKVAVNYLE 129 (131)
T ss_dssp CTHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHH
Confidence 7777766666654
Done!