Query 006481
Match_columns 643
No_of_seqs 24 out of 26
Neff 2.8
Searched_HMMs 29240
Date Tue Mar 26 02:13:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.2 0.00082 2.8E-08 60.2 24.4 38 405-442 222-259 (284)
2 1c1g_A Tropomyosin; contractIl 98.2 0.00098 3.3E-08 59.6 24.4 70 293-362 26-95 (284)
3 1i84_S Smooth muscle myosin he 97.8 2.6E-05 8.9E-10 89.8 8.5 19 284-302 854-872 (1184)
4 1i84_S Smooth muscle myosin he 97.6 0.00021 7.1E-09 82.4 11.5 10 176-185 675-684 (1184)
5 3na7_A HP0958; flagellar bioge 97.1 0.082 2.8E-06 51.5 21.4 122 294-415 18-141 (256)
6 3oja_B Anopheles plasmodium-re 97.0 0.0095 3.3E-07 62.1 14.6 133 318-453 445-577 (597)
7 3vkg_A Dynein heavy chain, cyt 97.0 0.053 1.8E-06 69.2 23.3 152 276-427 1887-2077(3245)
8 3na7_A HP0958; flagellar bioge 96.7 0.28 9.6E-06 47.7 21.4 124 301-424 18-143 (256)
9 2dfs_A Myosin-5A; myosin-V, in 96.6 0.029 9.8E-07 65.1 16.2 43 381-426 1001-1043(1080)
10 3vkg_A Dynein heavy chain, cyt 96.5 0.22 7.4E-06 63.9 23.9 153 295-447 1935-2104(3245)
11 3o0z_A RHO-associated protein 96.5 0.38 1.3E-05 46.0 19.8 134 286-433 5-138 (168)
12 2dfs_A Myosin-5A; myosin-V, in 96.3 0.071 2.4E-06 61.9 16.6 24 417-440 1020-1043(1080)
13 3oja_B Anopheles plasmodium-re 96.3 0.032 1.1E-06 58.2 12.5 76 368-450 506-581 (597)
14 2v71_A Nuclear distribution pr 95.7 0.27 9.2E-06 47.6 14.8 100 351-453 11-114 (189)
15 2fxo_A Myosin heavy chain, car 94.6 1.3 4.6E-05 39.5 15.2 26 373-398 64-89 (129)
16 3u1c_A Tropomyosin alpha-1 cha 94.6 0.89 3.1E-05 39.4 13.7 91 336-440 2-92 (101)
17 2efk_A CDC42-interacting prote 94.6 3.3 0.00011 39.5 19.6 133 305-440 66-215 (301)
18 3haj_A Human pacsin2 F-BAR; pa 94.5 2.2 7.4E-05 44.8 18.9 133 305-440 78-234 (486)
19 2jee_A YIIU; FTSZ, septum, coi 94.3 0.22 7.5E-06 42.8 9.0 67 389-455 10-76 (81)
20 3hnw_A Uncharacterized protein 93.8 0.43 1.5E-05 43.8 10.5 70 383-452 66-135 (138)
21 3abh_A Pacsin2, protein kinase 93.7 2.9 0.0001 40.6 16.7 147 305-454 85-259 (312)
22 2efl_A Formin-binding protein 93.5 5.4 0.00018 37.9 19.6 103 335-440 115-222 (305)
23 2fxo_A Myosin heavy chain, car 93.5 3.3 0.00011 37.0 15.4 58 389-446 66-123 (129)
24 3u59_A Tropomyosin beta chain; 92.7 2.5 8.7E-05 36.3 13.1 91 336-440 2-92 (101)
25 3a7p_A Autophagy protein 16; c 92.7 1.3 4.3E-05 41.9 12.0 82 320-401 59-140 (152)
26 3oja_A Leucine-rich immune mol 92.4 1.5 5.1E-05 45.1 13.2 55 277-332 344-398 (487)
27 3ol1_A Vimentin; structural ge 92.3 2.2 7.4E-05 38.0 12.4 29 415-443 71-99 (119)
28 3q8t_A Beclin-1; autophagy, AT 92.0 3.8 0.00013 35.4 13.2 58 336-407 4-61 (96)
29 3aco_A Pacsin2, protein kinase 91.7 5.9 0.0002 39.3 16.1 126 305-440 85-241 (350)
30 3s4r_A Vimentin; alpha-helix, 91.5 1.4 4.6E-05 38.1 9.9 71 377-450 22-93 (93)
31 3i00_A HIP-I, huntingtin-inter 91.5 0.63 2.2E-05 42.1 8.1 69 344-429 16-84 (120)
32 4dyl_A Tyrosine-protein kinase 91.2 11 0.00039 38.7 18.1 229 316-568 80-339 (406)
33 2x3v_A Syndapin I, protein kin 90.7 13 0.00045 36.4 20.7 145 306-453 77-249 (337)
34 3i2w_A Syndapin, LD46328P; EFC 90.5 5.6 0.00019 38.2 14.2 134 304-440 63-219 (290)
35 1ic2_A Tropomyosin alpha chain 90.4 1.8 6.2E-05 36.0 9.4 75 339-427 2-76 (81)
36 3oja_A Leucine-rich immune mol 89.7 12 0.00042 38.3 16.9 51 378-428 414-464 (487)
37 3o0z_A RHO-associated protein 88.6 11 0.00036 36.2 14.2 34 410-443 101-134 (168)
38 3swk_A Vimentin; cytoskeleton, 87.1 4 0.00014 34.7 9.4 81 345-446 2-82 (86)
39 3u1c_A Tropomyosin alpha-1 cha 86.9 15 0.0005 31.9 13.4 62 315-376 9-70 (101)
40 3u59_A Tropomyosin beta chain; 85.4 17 0.00058 31.2 13.2 41 312-352 20-60 (101)
41 2i1j_A Moesin; FERM, coiled-co 84.8 0.52 1.8E-05 51.2 3.6 35 361-395 346-380 (575)
42 2v71_A Nuclear distribution pr 84.2 32 0.0011 33.4 19.5 27 286-312 9-35 (189)
43 3q8t_A Beclin-1; autophagy, AT 84.1 15 0.00052 31.7 11.7 71 290-360 21-91 (96)
44 3tnu_B Keratin, type II cytosk 84.0 16 0.00053 32.5 12.1 71 334-407 34-104 (129)
45 2i1j_A Moesin; FERM, coiled-co 82.6 1.2 4.1E-05 48.5 5.2 27 277-303 287-313 (575)
46 2eqb_B RAB guanine nucleotide 82.5 19 0.00063 31.9 11.7 59 337-395 6-64 (97)
47 3m3w_A Pacsin3, protein kinase 82.4 15 0.0005 36.6 12.5 68 305-372 76-163 (320)
48 3hnw_A Uncharacterized protein 82.3 8.9 0.0003 35.1 10.0 9 260-268 8-16 (138)
49 3swk_A Vimentin; cytoskeleton, 81.3 11 0.00036 32.1 9.5 80 339-418 3-82 (86)
50 1x79_B RAB GTPase binding effe 81.2 22 0.00077 32.0 12.0 100 335-447 5-104 (112)
51 2ocy_A RAB guanine nucleotide 80.5 39 0.0013 31.9 18.2 86 359-450 60-145 (154)
52 3tnu_A Keratin, type I cytoske 80.3 18 0.0006 32.3 11.1 71 334-407 36-106 (131)
53 3ol1_A Vimentin; structural ge 79.1 34 0.0012 30.3 13.8 36 287-322 20-55 (119)
54 3fpp_A Macrolide-specific effl 78.9 7.2 0.00025 37.8 8.8 8 612-619 324-331 (341)
55 2efr_A General control protein 77.6 48 0.0016 31.2 19.0 66 355-420 75-140 (155)
56 4dk0_A Putative MACA; alpha-ha 77.5 9.8 0.00034 37.2 9.3 7 454-460 160-166 (369)
57 3mq9_A Bone marrow stromal ant 76.5 54 0.0019 33.5 14.8 33 292-324 357-389 (471)
58 2efk_A CDC42-interacting prote 76.0 55 0.0019 31.1 16.6 85 292-376 114-198 (301)
59 2v4h_A NF-kappa-B essential mo 75.7 33 0.0011 31.1 11.3 23 428-450 84-106 (110)
60 2oto_A M protein; helical coil 75.6 47 0.0016 30.1 18.2 110 298-411 26-140 (155)
61 3mq7_A Bone marrow stromal ant 75.5 27 0.00093 32.0 10.8 70 298-367 33-102 (121)
62 2wt7_B Transcription factor MA 74.5 16 0.00056 31.8 8.8 52 373-425 37-88 (90)
63 2jee_A YIIU; FTSZ, septum, coi 73.7 18 0.0006 31.2 8.6 69 287-362 6-74 (81)
64 1go4_E MAD1 (mitotic arrest de 73.3 15 0.0005 32.7 8.4 29 429-457 70-98 (100)
65 1jcd_A Major outer membrane li 73.2 9.7 0.00033 30.3 6.5 44 330-380 5-48 (52)
66 2v66_B Nuclear distribution pr 73.1 17 0.00057 32.8 8.8 43 411-453 15-61 (111)
67 3bas_A Myosin heavy chain, str 72.9 22 0.00076 30.0 9.2 38 360-397 45-82 (89)
68 1wt6_A Myotonin-protein kinase 71.5 15 0.00052 31.7 7.8 55 344-398 15-72 (81)
69 3u06_A Protein claret segregat 71.0 7 0.00024 41.1 6.8 62 384-459 2-63 (412)
70 1m1j_C Fibrinogen gamma chain; 69.3 43 0.0015 35.6 12.3 24 374-397 80-103 (409)
71 4emc_A Monopolin complex subun 67.1 9.7 0.00033 37.2 6.4 55 297-351 2-56 (190)
72 4etp_A Kinesin-like protein KA 66.3 11 0.00038 39.4 7.1 46 384-429 2-47 (403)
73 3i00_A HIP-I, huntingtin-inter 66.2 38 0.0013 30.6 9.7 90 288-401 16-115 (120)
74 3lay_A Zinc resistance-associa 65.8 27 0.00093 33.2 9.1 22 378-399 113-134 (175)
75 3iox_A AGI/II, PA; alpha helix 65.2 70 0.0024 35.1 13.1 78 288-375 17-94 (497)
76 3ghg_A Fibrinogen alpha chain; 64.3 65 0.0022 35.8 12.7 26 385-410 131-156 (562)
77 3ajw_A Flagellar FLIJ protein; 64.1 71 0.0024 27.6 14.2 49 385-440 74-122 (150)
78 1jcd_A Major outer membrane li 64.0 19 0.00064 28.7 6.3 29 317-345 6-34 (52)
79 2e7s_A RAB guanine nucleotide 63.9 29 0.001 32.2 8.6 78 365-448 54-131 (135)
80 3ajw_A Flagellar FLIJ protein; 63.7 73 0.0025 27.5 16.9 94 291-384 9-115 (150)
81 1go4_E MAD1 (mitotic arrest de 62.8 12 0.00042 33.1 5.7 42 329-370 12-55 (100)
82 3cvf_A Homer-3, homer protein 62.6 38 0.0013 28.9 8.4 69 363-434 5-73 (79)
83 2no2_A HIP-I, huntingtin-inter 62.1 84 0.0029 27.7 14.0 42 406-447 61-102 (107)
84 3fpp_A Macrolide-specific effl 61.3 20 0.00069 34.7 7.5 14 358-371 84-97 (341)
85 1joc_A EEA1, early endosomal a 61.3 14 0.00048 32.9 5.9 40 545-584 4-43 (125)
86 2x3v_A Syndapin I, protein kin 60.6 1.2E+02 0.0041 29.7 12.9 87 290-376 130-216 (337)
87 3ghg_A Fibrinogen alpha chain; 60.2 77 0.0026 35.2 12.4 75 292-366 62-140 (562)
88 3m91_A Proteasome-associated A 59.9 22 0.00077 28.1 6.1 35 314-348 15-49 (51)
89 3m9b_A Proteasome-associated A 59.8 9.4 0.00032 38.6 4.9 34 316-349 62-95 (251)
90 2wt7_A Proto-oncogene protein 59.0 55 0.0019 26.0 8.4 37 415-451 25-61 (63)
91 4e61_A Protein BIM1; EB1-like 59.0 23 0.00077 31.8 6.7 39 415-453 13-51 (106)
92 3ghg_C Fibrinogen gamma chain; 58.8 63 0.0022 34.6 11.2 33 374-406 80-112 (411)
93 1deq_A Fibrinogen (alpha chain 58.5 95 0.0032 33.2 12.3 90 291-381 64-172 (390)
94 2no2_A HIP-I, huntingtin-inter 58.0 99 0.0034 27.3 13.4 79 295-374 3-85 (107)
95 2efr_A General control protein 57.6 1.3E+02 0.0043 28.4 16.8 18 375-392 32-49 (155)
96 3htk_A Structural maintenance 57.5 63 0.0021 24.8 8.3 51 303-353 7-57 (60)
97 3iox_A AGI/II, PA; alpha helix 57.3 2.1E+02 0.0071 31.6 15.0 100 341-453 7-106 (497)
98 2v0o_A FCHO2, FCH domain only 56.1 1.3E+02 0.0045 28.1 18.1 138 306-449 71-216 (276)
99 1t2k_D Cyclic-AMP-dependent tr 55.7 60 0.002 25.5 8.0 50 303-352 10-59 (61)
100 3qh9_A Liprin-beta-2; coiled-c 55.6 30 0.001 29.9 6.7 34 417-450 44-77 (81)
101 3mq9_A Bone marrow stromal ant 53.6 2E+02 0.0067 29.3 13.7 10 275-284 291-301 (471)
102 2xdj_A Uncharacterized protein 52.2 94 0.0032 26.5 9.2 62 385-453 6-67 (83)
103 2j69_A Bacterial dynamin-like 52.1 2.8E+02 0.0094 30.6 17.7 16 285-300 308-323 (695)
104 3q0x_A Centriole protein; cent 51.8 28 0.00095 34.6 6.7 39 325-363 167-205 (228)
105 2ke4_A CDC42-interacting prote 51.6 94 0.0032 27.1 9.3 83 278-362 6-88 (98)
106 1t2k_D Cyclic-AMP-dependent tr 51.5 33 0.0011 27.0 5.9 34 417-450 26-59 (61)
107 2e7s_A RAB guanine nucleotide 51.4 41 0.0014 31.3 7.3 72 362-440 30-109 (135)
108 3i2w_A Syndapin, LD46328P; EFC 51.3 67 0.0023 30.7 9.2 90 290-379 117-206 (290)
109 2wt7_A Proto-oncogene protein 51.0 69 0.0024 25.4 7.8 51 303-353 11-61 (63)
110 3bas_A Myosin heavy chain, str 50.8 1.1E+02 0.0038 25.7 10.8 21 333-353 11-31 (89)
111 1jnm_A Proto-oncogene C-JUN; B 50.7 31 0.0011 27.2 5.7 51 303-353 10-60 (62)
112 2xdj_A Uncharacterized protein 49.6 93 0.0032 26.5 8.7 42 321-362 26-67 (83)
113 4fi5_A Nucleoprotein; structur 49.3 1.2E+02 0.004 27.7 9.7 70 292-361 24-94 (113)
114 3va9_A Sensor histidine kinase 48.1 1.5E+02 0.0051 26.4 11.8 32 372-403 117-148 (164)
115 3m0a_A TNF receptor-associated 47.9 1E+02 0.0034 24.3 8.3 58 390-447 3-60 (66)
116 2yfa_A MCPS, methyl-accepting 47.7 1.7E+02 0.0057 26.8 20.0 24 278-301 39-63 (258)
117 4dk0_A Putative MACA; alpha-ha 47.4 69 0.0023 31.3 8.7 12 412-423 135-146 (369)
118 1m1j_B Fibrinogen beta chain; 47.2 3.1E+02 0.011 29.8 15.1 35 328-362 113-147 (464)
119 1ez3_A Syntaxin-1A; three heli 46.6 1.3E+02 0.0046 25.4 9.8 14 288-301 13-26 (127)
120 3m9b_A Proteasome-associated A 46.4 14 0.00049 37.2 3.8 43 406-448 54-96 (251)
121 2yy0_A C-MYC-binding protein; 46.0 13 0.00044 29.3 2.7 31 317-347 21-51 (53)
122 2dnx_A Syntaxin-12; snare, HAB 46.0 1.6E+02 0.0055 26.1 12.4 96 282-380 5-114 (130)
123 2f1m_A Acriflavine resistance 45.4 56 0.0019 30.7 7.5 9 453-461 135-143 (277)
124 4h22_A Leucine-rich repeat fli 45.2 1.1E+02 0.0037 27.5 8.7 74 299-372 21-97 (103)
125 1ic2_A Tropomyosin alpha chain 45.1 1.3E+02 0.0044 24.8 9.2 46 310-355 15-60 (81)
126 2v4h_A NF-kappa-B essential mo 44.9 1.8E+02 0.0061 26.4 11.3 78 337-426 25-103 (110)
127 1m1j_B Fibrinogen beta chain; 44.3 3.4E+02 0.012 29.4 15.5 28 326-353 125-152 (464)
128 3hhm_B NISH2 P85alpha; PI3KCA, 44.3 3E+02 0.01 28.7 14.1 38 389-426 209-246 (373)
129 2p22_C Protein SRN2; endosome, 43.7 2.3E+02 0.0078 27.2 14.8 77 318-401 75-151 (192)
130 3u06_A Protein claret segregat 43.3 55 0.0019 34.4 7.8 66 381-456 6-71 (412)
131 3s4r_A Vimentin; alpha-helix, 42.9 97 0.0033 26.5 7.9 38 384-421 55-92 (93)
132 1ci6_A Transcription factor AT 42.9 58 0.002 26.0 6.2 36 416-451 26-61 (63)
133 3fhn_A Protein transport prote 42.8 92 0.0032 35.4 9.9 29 287-315 10-38 (706)
134 1f5n_A Interferon-induced guan 42.7 3.8E+02 0.013 29.5 20.8 59 376-440 490-550 (592)
135 2oqq_A Transcription factor HY 42.3 66 0.0023 24.9 6.0 38 538-575 3-40 (42)
136 1jnm_A Proto-oncogene C-JUN; B 41.8 22 0.00077 28.1 3.6 31 418-448 27-57 (62)
137 4ani_A Protein GRPE; chaperone 40.7 69 0.0024 31.4 7.5 50 337-386 60-109 (213)
138 1wle_A Seryl-tRNA synthetase; 40.6 1.9E+02 0.0065 31.3 11.6 22 375-396 120-141 (501)
139 2qdq_A Talin-1; dimerisation d 40.5 35 0.0012 27.2 4.4 26 393-418 9-34 (50)
140 2wt7_B Transcription factor MA 39.8 51 0.0017 28.7 5.7 40 336-375 48-87 (90)
141 3mtu_A Tropomyosin alpha-1 cha 39.7 1E+02 0.0035 25.5 7.3 35 336-370 2-36 (75)
142 2w83_C C-JUN-amino-terminal ki 39.5 1.1E+02 0.0039 26.2 7.7 66 316-395 10-75 (77)
143 4etp_A Kinesin-like protein KA 39.4 65 0.0022 33.6 7.6 56 404-459 8-63 (403)
144 1ik9_A DNA repair protein XRCC 39.3 2.7E+02 0.0092 27.0 11.4 35 317-351 141-175 (213)
145 3mtu_A Tropomyosin alpha-1 cha 39.3 58 0.002 27.0 5.8 34 420-453 9-42 (75)
146 1hjb_A Ccaat/enhancer binding 39.3 74 0.0025 27.4 6.6 24 374-397 32-55 (87)
147 2zuo_A MVP, major vault protei 38.2 5.5E+02 0.019 30.1 19.6 32 257-297 628-659 (861)
148 3or1_C Sulfite reductase GAMA; 37.6 14 0.00046 32.8 1.8 15 623-637 77-91 (105)
149 2ic9_A Nucleocapsid protein; h 37.5 2.2E+02 0.0075 25.3 10.1 66 292-357 7-73 (96)
150 2zqm_A Prefoldin beta subunit 36.8 1.9E+02 0.0064 24.2 10.9 40 323-362 7-46 (117)
151 3a5t_A Transcription factor MA 35.7 9.4 0.00032 34.1 0.5 51 374-425 48-98 (107)
152 1x79_B RAB GTPase binding effe 34.2 2.6E+02 0.009 25.2 11.4 43 318-360 41-83 (112)
153 2dq0_A Seryl-tRNA synthetase; 33.8 2.4E+02 0.0084 29.9 10.9 24 374-397 72-95 (455)
154 4i0x_B ESAT-6-like protein MAB 33.3 2.1E+02 0.007 23.7 10.9 59 287-345 11-72 (103)
155 2k48_A Nucleoprotein; viral pr 33.2 2.7E+02 0.0094 25.1 11.3 68 289-356 34-102 (107)
156 3a7p_A Autophagy protein 16; c 32.8 3.2E+02 0.011 25.8 11.5 59 291-349 65-130 (152)
157 2f23_A Anti-cleavage anti-GREA 32.6 79 0.0027 28.8 6.1 60 286-351 9-68 (156)
158 2eqb_B RAB guanine nucleotide 32.5 1.4E+02 0.0047 26.5 7.3 87 342-442 4-91 (97)
159 3tul_A Cell invasion protein S 32.0 2.8E+02 0.0096 26.4 9.7 44 338-381 22-65 (158)
160 2yy0_A C-MYC-binding protein; 31.9 59 0.002 25.6 4.5 24 562-585 22-45 (53)
161 3qa8_A MGC80376 protein; kinas 31.8 2.1E+02 0.0073 31.8 10.4 134 294-455 433-580 (676)
162 1gu4_A CAAT/enhancer binding p 31.3 1.1E+02 0.0036 25.9 6.2 15 405-419 56-70 (78)
163 1ses_A Seryl-tRNA synthetase; 31.3 2.4E+02 0.0083 29.5 10.3 12 530-541 166-177 (421)
164 1joc_A EEA1, early endosomal a 31.0 1.5E+02 0.0052 26.2 7.6 35 292-326 16-50 (125)
165 1wt6_A Myotonin-protein kinase 29.9 1.8E+02 0.0063 25.1 7.5 28 419-446 44-71 (81)
166 2p4v_A Transcription elongatio 29.7 1.2E+02 0.004 27.9 6.8 60 286-351 8-68 (158)
167 1nkp_B MAX protein, MYC proto- 29.6 23 0.00077 29.1 1.8 60 286-352 18-77 (83)
168 2p4v_A Transcription elongatio 29.3 1.2E+02 0.0042 27.8 6.8 13 338-350 11-23 (158)
169 4b6x_A AVRRPS4, avirulence pro 29.0 2.5E+02 0.0086 24.5 8.2 59 347-414 26-84 (90)
170 1gd2_E Transcription factor PA 28.9 1.3E+02 0.0045 24.9 6.3 14 385-398 29-42 (70)
171 1l4a_C S-SNAP25 fusion protein 28.6 1.2E+02 0.0041 25.8 6.2 60 363-426 15-82 (83)
172 1nkp_A C-MYC, MYC proto-oncoge 28.5 39 0.0013 28.6 3.1 63 286-348 22-85 (88)
173 3jsv_C NF-kappa-B essential mo 28.4 2.7E+02 0.0094 24.6 8.5 15 348-362 52-66 (94)
174 3s9g_A Protein hexim1; cyclin 28.4 3.2E+02 0.011 24.6 8.9 49 297-352 33-81 (104)
175 3hhm_B NISH2 P85alpha; PI3KCA, 28.4 5.2E+02 0.018 26.9 13.0 33 325-357 201-233 (373)
176 3cvf_A Homer-3, homer protein 28.3 1E+02 0.0035 26.3 5.6 47 371-424 6-52 (79)
177 3tnu_A Keratin, type I cytoske 28.1 3.1E+02 0.011 24.2 11.4 33 333-365 28-60 (131)
178 2xnx_M M protein, M1-BC1; cell 27.9 1.2E+02 0.004 28.7 6.5 24 425-448 113-136 (146)
179 3uul_A Utrophin; spectrin repe 27.6 2.4E+02 0.0082 22.7 10.8 28 337-364 37-64 (118)
180 2w6a_A ARF GTPase-activating p 27.6 1.4E+02 0.0049 24.7 6.1 35 419-453 19-53 (63)
181 3etw_A Adhesin A; antiparallel 27.3 3.6E+02 0.012 24.5 11.3 23 365-387 25-47 (119)
182 2zvf_A Alanyl-tRNA synthetase; 26.5 1E+02 0.0036 27.4 5.7 27 325-351 28-54 (171)
183 2dq0_A Seryl-tRNA synthetase; 26.4 2.6E+02 0.0088 29.7 9.6 24 432-455 81-104 (455)
184 3tnu_B Keratin, type II cytosk 26.4 3.3E+02 0.011 23.9 12.3 38 330-367 23-60 (129)
185 2ve7_A Kinetochore protein HEC 26.2 86 0.0029 31.7 5.7 64 384-450 166-233 (315)
186 3kp1_E D-ornithine aminomutase 26.1 26 0.00088 32.2 1.7 42 285-331 3-44 (121)
187 1s94_A S-syntaxin; three helix 26.1 3.2E+02 0.011 24.8 9.0 19 288-306 44-62 (180)
188 3s9g_A Protein hexim1; cyclin 26.1 3E+02 0.01 24.7 8.4 23 384-406 64-86 (104)
189 3gp4_A Transcriptional regulat 25.8 3.5E+02 0.012 24.0 10.5 22 376-397 79-100 (142)
190 1lwu_C Fibrinogen gamma chain; 25.7 1.1E+02 0.0039 31.5 6.5 16 381-396 8-23 (323)
191 1grj_A GREA protein; transcrip 25.7 1.9E+02 0.0066 26.3 7.5 13 338-350 11-23 (158)
192 2wq1_A General control protein 25.6 1E+02 0.0035 22.9 4.4 28 290-317 3-30 (33)
193 1sjj_A Actinin; 3-helix bundle 25.3 7E+02 0.024 27.3 15.4 15 310-324 427-441 (863)
194 3qne_A Seryl-tRNA synthetase, 25.2 3.1E+02 0.011 29.7 10.1 24 432-455 83-106 (485)
195 3qne_A Seryl-tRNA synthetase, 24.9 1.4E+02 0.005 32.3 7.4 69 290-362 43-111 (485)
196 2dq3_A Seryl-tRNA synthetase; 24.9 2.1E+02 0.0073 29.9 8.5 24 374-397 71-94 (425)
197 4dzn_A Coiled-coil peptide CC- 24.9 1.2E+02 0.0039 22.2 4.5 18 337-354 3-20 (33)
198 3he5_B Synzip2; heterodimeric 24.8 1.9E+02 0.0063 22.8 6.0 20 427-446 24-43 (52)
199 3lss_A Seryl-tRNA synthetase; 24.8 4E+02 0.014 28.8 10.8 24 410-433 115-138 (484)
200 3iv1_A Tumor susceptibility ge 24.8 2.4E+02 0.0082 24.1 7.2 47 405-451 17-63 (78)
201 1wle_A Seryl-tRNA synthetase; 24.6 1.7E+02 0.0059 31.6 8.0 37 326-362 120-156 (501)
202 1ses_A Seryl-tRNA synthetase; 24.6 2.1E+02 0.0072 30.0 8.4 14 379-392 72-85 (421)
203 2ocy_A RAB guanine nucleotide 24.5 4.5E+02 0.015 24.8 17.8 25 418-442 99-123 (154)
204 2kes_A Synphilin-1; synphillin 24.3 1.8E+02 0.0063 22.8 5.9 40 378-417 4-43 (48)
205 1fzc_C Fibrin; blood coagulati 23.5 32 0.0011 35.5 2.0 12 386-397 5-16 (319)
206 1ik9_A DNA repair protein XRCC 23.5 5.1E+02 0.017 25.1 12.7 70 317-409 134-203 (213)
207 3cve_A Homer protein homolog 1 22.8 3.2E+02 0.011 22.9 7.6 26 382-407 18-43 (72)
208 4ioe_A Secreted protein ESXB; 22.6 2.8E+02 0.0096 21.7 10.8 65 287-351 9-78 (93)
209 1ci6_A Transcription factor AT 22.5 2.9E+02 0.01 21.9 8.2 44 307-350 15-58 (63)
210 4e61_A Protein BIM1; EB1-like 22.1 1.3E+02 0.0046 26.9 5.4 23 345-367 20-42 (106)
211 2f1m_A Acriflavine resistance 22.0 3.9E+02 0.013 25.0 9.0 9 364-372 98-106 (277)
212 4b4t_M 26S protease regulatory 22.0 49 0.0017 35.0 3.1 14 546-559 227-240 (434)
213 1quu_A Human skeletal muscle a 21.8 4.8E+02 0.016 24.1 15.2 38 287-324 48-85 (250)
214 3haj_A Human pacsin2 F-BAR; pa 21.7 7E+02 0.024 26.0 23.4 35 406-443 185-219 (486)
215 3uun_A Dystrophin; triple heli 21.7 3.1E+02 0.011 21.9 13.5 28 337-364 37-64 (119)
216 3ghg_B Fibrinogen beta chain; 21.6 8.1E+02 0.028 26.7 13.9 74 327-411 107-182 (461)
217 3vem_A Helicase protein MOM1; 21.5 2E+02 0.0069 26.2 6.5 44 390-439 55-98 (115)
218 3efg_A Protein SLYX homolog; x 21.5 1.7E+02 0.0058 24.5 5.7 25 432-456 40-64 (78)
219 1uii_A Geminin; human, DNA rep 21.1 3.8E+02 0.013 23.2 7.8 67 283-350 3-74 (83)
220 4dzn_A Coiled-coil peptide CC- 20.9 1.4E+02 0.0048 21.7 4.3 29 344-372 3-31 (33)
221 1wlq_A Geminin; coiled-coil; 2 20.5 3.1E+02 0.011 23.8 7.2 37 313-350 30-66 (83)
222 3lay_A Zinc resistance-associa 20.3 5.5E+02 0.019 24.2 9.8 22 336-357 113-134 (175)
223 1ykh_B RNA polymerase II holoe 20.2 1.7E+02 0.0059 26.4 5.9 26 561-586 94-119 (132)
224 3mq7_A Bone marrow stromal ant 20.0 5.1E+02 0.018 23.8 10.7 54 387-450 55-108 (121)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.24 E-value=0.00082 Score=60.15 Aligned_cols=38 Identities=13% Similarity=0.320 Sum_probs=15.2
Q ss_pred HHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 006481 405 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 442 (643)
Q Consensus 405 erele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEE 442 (643)
+.++..+..++..+..++..+...+..+...+..++++
T Consensus 222 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (284)
T 1c1g_A 222 EEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDE 259 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444433333333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.21 E-value=0.00098 Score=59.64 Aligned_cols=70 Identities=7% Similarity=0.106 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006481 293 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 362 (643)
Q Consensus 293 qqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 362 (643)
+..|+++..+.-.+...+.....-.+.+..+-..+....+.....+..+...+.+++.++......+..+
T Consensus 26 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (284)
T 1c1g_A 26 EADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLF 95 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344433333344444344444444433334444444444443333333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.83 E-value=2.6e-05 Score=89.76 Aligned_cols=19 Identities=11% Similarity=0.400 Sum_probs=10.0
Q ss_pred CchhhHHHHHHHHHHHHHH
Q 006481 284 KHNEDFAALEQHIEDLTQE 302 (643)
Q Consensus 284 ~~~~~faaLqqhIeDLT~E 302 (643)
....++..|++-|+++..+
T Consensus 854 ~~~~El~~L~~eL~el~~~ 872 (1184)
T 1i84_S 854 RQEEEMQAKDEELQRTKER 872 (1184)
T ss_dssp THHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566665555554443
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.62 E-value=0.00021 Score=82.44 Aligned_cols=10 Identities=10% Similarity=0.507 Sum_probs=4.3
Q ss_pred CCcccccccc
Q 006481 176 KSRASFLDSL 185 (643)
Q Consensus 176 rSRpSFLDSl 185 (643)
...|.|.--|
T Consensus 675 ~t~phfvRCI 684 (1184)
T 1i84_S 675 NTNPNFVRCI 684 (1184)
T ss_dssp TSEEEECCEE
T ss_pred hcCCCceeee
Confidence 3444444443
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.12 E-value=0.082 Score=51.46 Aligned_cols=122 Identities=13% Similarity=0.159 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHhh
Q 006481 294 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF--RNEYANVRL 371 (643)
Q Consensus 294 qhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l--~aErdaArl 371 (643)
..|+.|..++-.|...|+...+-...|.+.-.++...+......+..++.+++.++.-|+.....+.++ .-||++..-
T Consensus 18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~k 97 (256)
T 3na7_A 18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNI 97 (256)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 344555555544444444443333333333333444444444444444444444444444444444444 357777777
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHH
Q 006481 372 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 415 (643)
Q Consensus 372 e~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~ 415 (643)
+...+..|-..+-.++..+.+++-.++...-.++.+++.+..++
T Consensus 98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777666544444444444444433
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.01 E-value=0.0095 Score=62.07 Aligned_cols=133 Identities=16% Similarity=0.159 Sum_probs=59.3
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006481 318 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 397 (643)
Q Consensus 318 esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L 397 (643)
...+..++.+.+..|+....|..|+.++.+.++.++.+..+++..+.++.....+... -...+..++-.++++...+
T Consensus 445 ~~~~~~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~ 521 (597)
T 3oja_B 445 GVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLAR---SSDNLNKVFTHLKERQAFK 521 (597)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSC---HHHHHHHHHHHHHHHHHHH
T ss_pred hhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCC---HHHHHHHHHHHHHhhhhhh
Confidence 3334466666666666666666666666666666665555555443333211111111 1233444444444444443
Q ss_pred hhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006481 398 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 398 RS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
-....+.+++++....+.+.+++++..+++.-...+..+..+++|...+..+|.+.
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 522 LRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444445555555554555555555555544444444443
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.98 E-value=0.053 Score=69.17 Aligned_cols=152 Identities=16% Similarity=0.253 Sum_probs=106.3
Q ss_pred cccccccCCchhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhhhHHHHHHHH
Q 006481 276 NQHGFYSTKHNEDFAA-----LEQHIEDLTQEKFALQRSLEASRALSESLA-----------------AENSSLTDSYNQ 333 (643)
Q Consensus 276 ~~~~F~s~~~~~~faa-----LqqhIeDLT~EKfaLqR~L~~s~~l~esLa-----------------~ENsaLt~~yNq 333 (643)
+-|+|.++..==+|=. |.+..+++...+--|+.||+|=.+.+++++ .|.+++...--.
T Consensus 1887 ~R~~yvTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~ 1966 (3245)
T 3vkg_A 1887 GRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQ 1966 (3245)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778877666643 567778888888888888888665554443 334444444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------------HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHH
Q 006481 334 QRSVVNQLKSEMEKLQEEIKVQLVELESF-----------------RNEYANVRLECNAADERAKILASEVIGLEEKALR 396 (643)
Q Consensus 334 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l-----------------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~ 396 (643)
....+++-|..+++.+.++++|..+.+.. +.+.+.|+.+..+|.++-+..-+++..||+++.+
T Consensus 1967 ~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~ 2046 (3245)
T 3vkg_A 1967 DQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIAT 2046 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666555554443 4556677888888899989999999999999999
Q ss_pred HhhhhhhhHHHHhhhHHHHHHHHHHhhhHHH
Q 006481 397 LRSNELKLERQLENSQSEISSYKKKISSLEK 427 (643)
Q Consensus 397 LRS~eLKlerele~l~~E~~s~~~qlsslek 427 (643)
|+-+-=++-+|.+.+..+++.|++++..+++
T Consensus 2047 L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~ 2077 (3245)
T 3vkg_A 2047 YKEEYATLIRETEQIKTESSKVKNKVDRSIA 2077 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9877767777778888888888888876544
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.71 E-value=0.28 Score=47.72 Aligned_cols=124 Identities=10% Similarity=0.100 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh--hhhhhHHH
Q 006481 301 QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR--LECNAADE 378 (643)
Q Consensus 301 ~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaAr--le~~aA~E 378 (643)
.+-..|...+..-.+-.+.|.++-..+.+++..-...+..++.++.+++.+|+.-...++..+.--++++ -++.+...
T Consensus 18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~k 97 (256)
T 3na7_A 18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNI 97 (256)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 3444444444444555666666666666666666666666666666666666555544444443333322 12233333
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh
Q 006481 379 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS 424 (643)
Q Consensus 379 Rak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlss 424 (643)
.-..+..++-.||++++++--..=.++.+++.+..++...++.+..
T Consensus 98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~ 143 (256)
T 3na7_A 98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALE 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444332223333344444444444444433
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.65 E-value=0.029 Score=65.10 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=17.8
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHH
Q 006481 381 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 426 (643)
Q Consensus 381 k~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssle 426 (643)
..+..|.-.||+++.+++. .|+..+..+..|...++.|+..++
T Consensus 1001 ~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1001 HQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444431 223444444444444444444443
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.53 E-value=0.22 Score=63.87 Aligned_cols=153 Identities=13% Similarity=0.191 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----------------HH
Q 006481 295 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-----------------LV 357 (643)
Q Consensus 295 hIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-----------------~~ 357 (643)
.|++|..|=-.++-.|++.++-++.+-.+-..=+...+++...|.+++.+++.-+.+|++. +.
T Consensus 1935 ~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~ 2014 (3245)
T 3vkg_A 1935 QVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLRE 2014 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHH
Confidence 3455555545555556666666665555555555566666666666666665555554433 23
Q ss_pred HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHH
Q 006481 358 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 437 (643)
Q Consensus 358 ~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~ 437 (643)
+|+.+.+|.+.|+....++.+.-+.+-.+|-.|.++....-.+.-+++.+++.....+.+.++=+..|.-|+..-...++
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSE 2094 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence 56677777777777777777777777777777777777777777777777777777777777777777777776666666
Q ss_pred HHHHHHHHHH
Q 006481 438 ALQEEKKMMQ 447 (643)
Q Consensus 438 aLQEEKklLq 447 (643)
.++++.+.|-
T Consensus 2095 ~l~~~~~~L~ 2104 (3245)
T 3vkg_A 2095 NFNTQMSTVV 2104 (3245)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 6666554443
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.47 E-value=0.38 Score=46.01 Aligned_cols=134 Identities=16% Similarity=0.189 Sum_probs=83.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 006481 286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 365 (643)
Q Consensus 286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE 365 (643)
++-+..||.-|+|+...=-+-..+.++.++..-.|......+-...++....+..|+.....|++++ ..+.+.
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~-------~~LQa~ 77 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDY-------YQLQAI 77 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 4556778888998876545555666677776666655555555555555555555555555555554 444444
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhH
Q 006481 366 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQ 433 (643)
Q Consensus 366 rdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~ 433 (643)
.+.=|-.+..+.|+..-|-.=|-.|++.+-++|..+-|++-+...|... +..+||+...+.
T Consensus 78 L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ek-------l~~lEKe~a~~e 138 (168)
T 3o0z_A 78 LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDM-------LNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhh
Confidence 4444445667778888787888888888888888888766665555544 555555555544
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.30 E-value=0.071 Score=61.90 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=12.8
Q ss_pred HHHHHhhhHHHhhhhhHHHHHHHH
Q 006481 417 SYKKKISSLEKERQDFQSTIEALQ 440 (643)
Q Consensus 417 s~~~qlsslekeR~~l~s~i~aLQ 440 (643)
.++.++..|+++-+.|+..++.|.
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555544
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.28 E-value=0.032 Score=58.16 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=30.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 006481 368 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 447 (643)
Q Consensus 368 aArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLq 447 (643)
..........+|.+.+..+.-.+++++-+. +++++.+..|+...+++++...+....+...+.++..|.|.|+
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAK-------QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhh-------hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333444445544444444444444332 2222233333333333333333333333444444444444444
Q ss_pred HHH
Q 006481 448 SKL 450 (643)
Q Consensus 448 skL 450 (643)
.++
T Consensus 579 ~~~ 581 (597)
T 3oja_B 579 AKK 581 (597)
T ss_dssp HTT
T ss_pred HHh
Confidence 443
No 14
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.67 E-value=0.27 Score=47.64 Aligned_cols=100 Identities=12% Similarity=0.185 Sum_probs=64.9
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHH----HHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHH
Q 006481 351 EIKVQLVELESFRNEYANVRLECNAADERAKILA----SEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 426 (643)
Q Consensus 351 Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LA----aEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssle 426 (643)
+|.-.......++.+++.++.++++=.+-+|-|- +|+-.+|-++..|++..-+++.+++.++.+......+..
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~--- 87 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY--- 87 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3333334444555566666666666667776655 456777777777777777777776666655544444311
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006481 427 KERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 427 keR~~l~s~i~aLQEEKklLqskLRka 453 (643)
+.=..|+..|..|++++..|+.+||..
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124456777888889999999999987
No 15
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.62 E-value=1.3 Score=39.50 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHh
Q 006481 373 CNAADERAKILASEVIGLEEKALRLR 398 (643)
Q Consensus 373 ~~aA~ERak~LAaEVV~LEEk~l~LR 398 (643)
|.+|.||...|.+.=+.||.++-.+.
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~ 89 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMN 89 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777776553
No 16
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.62 E-value=0.89 Score=39.45 Aligned_cols=91 Identities=19% Similarity=0.271 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHH
Q 006481 336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 415 (643)
Q Consensus 336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~ 415 (643)
+-|..+|.+|..|+.+ .+.....++.+...+..+..|+..+-.||..|--|+..+ +.+++.+...+
T Consensus 2 ~~MdaIKkKm~~lk~e-------~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~l-------E~eld~~ee~L 67 (101)
T 3u1c_A 2 GHMDAIKKKMQMLKLD-------KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVT-------EDSRDQVLEEL 67 (101)
T ss_dssp CHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 4577888888666665 344444455555556666777777777777777766644 66666666666
Q ss_pred HHHHHHhhhHHHhhhhhHHHHHHHH
Q 006481 416 SSYKKKISSLEKERQDFQSTIEALQ 440 (643)
Q Consensus 416 ~s~~~qlsslekeR~~l~s~i~aLQ 440 (643)
.....+++..+|.+......|.+|+
T Consensus 68 ~ea~~kLee~ek~~~~aE~ev~~L~ 92 (101)
T 3u1c_A 68 HKSEDSLLFAEENAAKAESEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777776666666664
No 17
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=94.56 E-value=3.3 Score=39.47 Aligned_cols=133 Identities=12% Similarity=0.192 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 006481 305 ALQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 372 (643)
Q Consensus 305 aLqR~L~~s~~l~esLa~ENsaLt~~yNq------------Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle 372 (643)
.+.++...-..-++.+|..+..+.+.++. +.......+..+++++.++..+...++..+..|+.+-.+
T Consensus 66 t~~~~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e 145 (301)
T 2efk_A 66 SQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCRE 145 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555556666555555532 233334455667777778888888888888888887776
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhh-----hhhHHHHHHHH
Q 006481 373 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER-----QDFQSTIEALQ 440 (643)
Q Consensus 373 ~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR-----~~l~s~i~aLQ 440 (643)
+..|..........-..=...+.+++....+....++.++ ..|..+|..+.+.+ .+|-.+++.||
T Consensus 146 ~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~~~~~~~~~a~---~~Y~~~v~~~n~~~~~~~~~~~p~~~~~lQ 215 (301)
T 2efk_A 146 AEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESK---NEYAAQLQRFNRDQAHFYFSQMPQIFDKLQ 215 (301)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCcccCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666554433211100000011122222222233333333 44666666666553 23555667666
No 18
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=94.51 E-value=2.2 Score=44.85 Aligned_cols=133 Identities=14% Similarity=0.146 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hH-------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006481 305 ALQRSLEASRALSESLAAENSSLTDSYNQQ-RS-------------------VVNQLKSEMEKLQEEIKVQLVELESFRN 364 (643)
Q Consensus 305 aLqR~L~~s~~l~esLa~ENsaLt~~yNqQ-~~-------------------~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a 364 (643)
.|..+...-..-++.+|..+..+......+ -. ....++..+++++++++.+...|+..+.
T Consensus 78 tl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~l~KaKk 157 (486)
T 3haj_A 78 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 157 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556667777777776666322 11 2345556678888888888899999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhh----HHHHHHHH
Q 006481 365 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF----QSTIEALQ 440 (643)
Q Consensus 365 ErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l----~s~i~aLQ 440 (643)
.|..+-.+...|..+.+..-.+-..=..++.+++...-|...+++.++ ..|+..|..+.+.|++. ..+++.||
T Consensus 158 ~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~---~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ 234 (486)
T 3haj_A 158 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTK---EKYEKSLKELDQGTPQYMENMEQVFEQCQ 234 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888887777655544311100001223333333344444444444 44666666666666543 33445555
No 19
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.34 E-value=0.22 Score=42.84 Aligned_cols=67 Identities=18% Similarity=0.287 Sum_probs=55.3
Q ss_pred hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006481 389 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 455 (643)
Q Consensus 389 ~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~ 455 (643)
.||+||.++=-----|+-++++|+.+-..+..+.+.+...|..|...++.|++|....++|||...+
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888763333345677888888888888889998888999999999999999999999998754
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.81 E-value=0.43 Score=43.75 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=53.9
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006481 383 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 452 (643)
Q Consensus 383 LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRk 452 (643)
+|.|...+.+++.+|+.+--.+++++..++.++.+++-++..+.++-..++.-+++||++.+.|++.|..
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555566665555566888888888888888899998888888999999999999999887753
No 21
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=93.66 E-value=2.9 Score=40.59 Aligned_cols=147 Identities=16% Similarity=0.182 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006481 305 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN 364 (643)
Q Consensus 305 aLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~-~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a 364 (643)
.|..+...-..-++.+|..+..+.+..+.+- ..+ ..+...+++++.++..+...++..+.
T Consensus 85 tl~~aw~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~k~~~~~~ke~k~~~~~~~k~~k~~~~~~~~l~KaK~ 164 (312)
T 3abh_A 85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 164 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCTTSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666667777777777777666432 222 34555667777778788888888888
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh----hHHHHHHHH
Q 006481 365 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD----FQSTIEALQ 440 (643)
Q Consensus 365 ErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~----l~s~i~aLQ 440 (643)
.|+.+-.+...|.......-..-..-..++.+++..--|++.++..+. ..|...|..+.+-|.+ |..+++.||
T Consensus 165 ~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~---~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q 241 (312)
T 3abh_A 165 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTK---EKYEKSLKELDQGTPQYMENMEQVFEQCQ 241 (312)
T ss_dssp HHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 888877666666543321110000001122222222223333333333 4456666666665554 445556665
Q ss_pred --HHHH--HHHHHHHhhh
Q 006481 441 --EEKK--MMQSKLRKAS 454 (643)
Q Consensus 441 --EEKk--lLqskLRka~ 454 (643)
||.+ .|...|....
T Consensus 242 ~lee~Rl~~lk~~l~~~~ 259 (312)
T 3abh_A 242 QFEEKRLRFFREVLLEVQ 259 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4433 3444455443
No 22
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=93.47 E-value=5.4 Score=37.92 Aligned_cols=103 Identities=14% Similarity=0.186 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHH
Q 006481 335 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE 414 (643)
Q Consensus 335 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E 414 (643)
.......+..+.+++.++..+...++..+..|..+-.++..|.........+.-.=-.++.+.+...-+....++.++
T Consensus 115 ~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~~~~~s~~~~eK~~~k~~~~~~~~~~a~-- 192 (305)
T 2efl_A 115 KQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSK-- 192 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHHHHHHHHHHHH--
Confidence 334455666777788888888888888888888888777777665543322110000011122222222233333333
Q ss_pred HHHHHHHhhhHHHh-hh----hhHHHHHHHH
Q 006481 415 ISSYKKKISSLEKE-RQ----DFQSTIEALQ 440 (643)
Q Consensus 415 ~~s~~~qlssleke-R~----~l~s~i~aLQ 440 (643)
..|...|..+.+. |. ++-.+++.||
T Consensus 193 -~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ 222 (305)
T 2efl_A 193 -ADYSSILQKFNHEQHEYYHTHIPNIFQKIQ 222 (305)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655 33 3445556555
No 23
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=93.46 E-value=3.3 Score=36.95 Aligned_cols=58 Identities=14% Similarity=0.287 Sum_probs=46.2
Q ss_pred hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHH
Q 006481 389 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 446 (643)
Q Consensus 389 ~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklL 446 (643)
..|++|-+|......|+..+..+...+...+.+...|..++..|+..+..|.+.-.-+
T Consensus 66 e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999998888889999999988888888888888888877777777766554443
No 24
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.74 E-value=2.5 Score=36.33 Aligned_cols=91 Identities=21% Similarity=0.326 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHH
Q 006481 336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 415 (643)
Q Consensus 336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~ 415 (643)
..|..+|.+|..|+.+ .+......+.+...+..|..++..+-.||..|--|+..+ +.+++.+...+
T Consensus 2 ~~md~iKkKm~~lk~e-------~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~l-------E~eld~~~e~l 67 (101)
T 3u59_A 2 ASMEAIKKKMQMLKLD-------KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGT-------EDEVEKYSESV 67 (101)
T ss_dssp CTHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 3477788888666654 233344444445555556666666666666666666544 55555555555
Q ss_pred HHHHHHhhhHHHhhhhhHHHHHHHH
Q 006481 416 SSYKKKISSLEKERQDFQSTIEALQ 440 (643)
Q Consensus 416 ~s~~~qlsslekeR~~l~s~i~aLQ 440 (643)
..+..++...+|.+......|.+|+
T Consensus 68 ~~a~~kLe~~ek~~~~AE~evasLn 92 (101)
T 3u59_A 68 KEAQEKLEQAEKKATDAEAEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665555555543
No 25
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=92.71 E-value=1.3 Score=41.95 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=71.0
Q ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh
Q 006481 320 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 399 (643)
Q Consensus 320 La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS 399 (643)
+...|....+.-+.....+.+|+.++.+|+.+++...-.++.+..|+.+.+++++.+.++.+.|-.|=-.|=+|.++-+.
T Consensus 59 ~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 59 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566777788888889999999999999999999999999999999999999999999999999999999986654
Q ss_pred hh
Q 006481 400 NE 401 (643)
Q Consensus 400 ~e 401 (643)
.+
T Consensus 139 qE 140 (152)
T 3a7p_A 139 KE 140 (152)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 26
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.43 E-value=1.5 Score=45.10 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=40.5
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 006481 277 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN 332 (643)
Q Consensus 277 ~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yN 332 (643)
...||++..+ ++..+++....+.++|..|...+.+.++.-+....+......++.
T Consensus 344 L~gyC~s~~~-~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e 398 (487)
T 3oja_A 344 LKEQYRTVID-QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398 (487)
T ss_dssp HHHHTCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHhcChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhh
Confidence 3456665544 788888888899999999999988888777777666666555444
No 27
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=92.27 E-value=2.2 Score=37.97 Aligned_cols=29 Identities=28% Similarity=0.546 Sum_probs=15.5
Q ss_pred HHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 006481 415 ISSYKKKISSLEKERQDFQSTIEALQEEK 443 (643)
Q Consensus 415 ~~s~~~qlsslekeR~~l~s~i~aLQEEK 443 (643)
+..+++.+..+.--|-+|+.-|++|+||-
T Consensus 71 i~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 71 LQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555666666666654
No 28
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=91.96 E-value=3.8 Score=35.44 Aligned_cols=58 Identities=26% Similarity=0.320 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHH
Q 006481 336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ 407 (643)
Q Consensus 336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlere 407 (643)
..+.+|+.++..|+.+=..-...|..+..|+++ +++|+..||..+.+|.-.|-+.-++
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~--------------l~~el~~le~E~~~L~~eE~~~w~e 61 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELEDVEKNRKV--------------VAENLEKVQAEAERLDQEEAQYQRE 61 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345667777777777666666666666666655 6677777777777776666654444
No 29
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=91.67 E-value=5.9 Score=39.33 Aligned_cols=126 Identities=14% Similarity=0.190 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006481 305 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN 364 (643)
Q Consensus 305 aLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~-~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a 364 (643)
.|..+...-..-++.+|..+..+.+..+.+- ..+ ..+...+++++.++..+...++..+.
T Consensus 85 tl~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk 164 (350)
T 3aco_A 85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 164 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSCBCTTSSBHHHHHHHHHHHHHTSHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666667777777666665432 111 34455566666777777777777777
Q ss_pred HHHHHhhhhhhHHHHHHH-------HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh----hH
Q 006481 365 EYANVRLECNAADERAKI-------LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD----FQ 433 (643)
Q Consensus 365 ErdaArle~~aA~ERak~-------LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~----l~ 433 (643)
.|+.+-.+...|...... ...|+--++.|+.+.+.. ++.+. ..|...|..+.+.|.+ |.
T Consensus 165 ~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~-------~~~a~---~~Y~~~v~~~n~~~~~~~~~~~ 234 (350)
T 3aco_A 165 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQD-------VLKTK---EKYEKSLKELDQGTPQYMENME 234 (350)
T ss_dssp THHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 777765555544432210 023444444444444333 33332 3355555555555543 44
Q ss_pred HHHHHHH
Q 006481 434 STIEALQ 440 (643)
Q Consensus 434 s~i~aLQ 440 (643)
.+++.||
T Consensus 235 ~~~~~~Q 241 (350)
T 3aco_A 235 QVFEQCQ 241 (350)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555555
No 30
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=91.48 E-value=1.4 Score=38.05 Aligned_cols=71 Identities=14% Similarity=0.273 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhh-hHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006481 377 DERAKILASEVIGLEEKALRLRSNELKLERQLEN-SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 450 (643)
Q Consensus 377 ~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~-l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskL 450 (643)
.++++.|-.+--.||.++..++..+- ..+.. -..+|..++++|..+..|+..|+.-++.|+++-..++.||
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~~~~~---~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLKGQGK---SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35555666666666666666654321 12223 3578889999999999999999999999999988888775
No 31
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=91.48 E-value=0.63 Score=42.09 Aligned_cols=69 Identities=19% Similarity=0.308 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 006481 344 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 423 (643)
Q Consensus 344 ~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qls 423 (643)
.+++|+.||......++.|+.|.... |..|+.+|.+|-.+----+++...+..|.+.++..+.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~-----------------v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRV-----------------VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666788888887763 3444444444433322222333444555555555555
Q ss_pred hHHHhh
Q 006481 424 SLEKER 429 (643)
Q Consensus 424 slekeR 429 (643)
.+.+-+
T Consensus 79 ~l~~~~ 84 (120)
T 3i00_A 79 ELRRQR 84 (120)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 443333
No 32
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=91.15 E-value=11 Score=38.68 Aligned_cols=229 Identities=9% Similarity=0.084 Sum_probs=106.4
Q ss_pred HHHHHHHhhhHHHHHHHHhh-HHHHH-----------HHHHHHHHHHHHHHHH-HHhhhhHHHHHHHhhhhhhHHHHHHH
Q 006481 316 LSESLAAENSSLTDSYNQQR-SVVNQ-----------LKSEMEKLQEEIKVQL-VELESFRNEYANVRLECNAADERAKI 382 (643)
Q Consensus 316 l~esLa~ENsaLt~~yNqQ~-~~v~q-----------Lk~~mE~Lq~Ei~aQ~-~~le~l~aErdaArle~~aA~ERak~ 382 (643)
=++.+|..+..+.+.++.+- ..+.. ....+++++.++.... ..|+..+..|+.+-.++..|..+...
T Consensus 80 ete~~a~~H~~lae~L~~~v~~~l~~~~ke~~~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~ 159 (406)
T 4dyl_A 80 QTEGLSRLLRQHAEDLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQE 159 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35666777777777766552 23333 3334455666666667 67888888888877777777654433
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhh-----hhhHHHHHHHH--HHHH--HHHHHHHhh
Q 006481 383 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER-----QDFQSTIEALQ--EEKK--MMQSKLRKA 453 (643)
Q Consensus 383 LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR-----~~l~s~i~aLQ--EEKk--lLqskLRka 453 (643)
.+.. ..+.+.+ -|+++-...+..-...|..+|..+.+.. .+|-.+++.|| ||.+ .|..-|+..
T Consensus 160 ~~k~-----ke~eK~~---~k~~k~~~~~~~a~neY~~~l~~~N~~~~~yy~~~lp~~~d~lQ~lEe~Ri~~lk~~L~~~ 231 (406)
T 4dyl_A 160 ASKD-----KDRDKAK---DKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPGLLRSLQDLHEEMACILKEILQEY 231 (406)
T ss_dssp ------------CHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccC-----chHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1111222 1222222233333356777777665544 34666677776 3432 333444443
Q ss_pred hCCCCCcCCCCCcccc---cccccc------cccccccCccccCCCCCcccCCCCCCCCCCCCCCCCccccccccCcccc
Q 006481 454 SGSGKSIDFGKTAAST---VNASTS------TEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVN 524 (643)
Q Consensus 454 ~~~gk~~~~~k~~~~~---kDASTS------TdDLai~d~~~~sSn~e~~~s~s~~~~~~~~~P~~P~~G~~~l~~~~vs 524 (643)
+...... .+... ...-.+ ..|+..+-..-.+.... -.+++|-|--+.-...-.|..
T Consensus 232 ~~~~~~~----~~~~~~~~~~l~~~i~~id~~~D~~~Fi~~~~tg~~~-----------P~~~~Fep~~~~d~~~l~~~~ 296 (406)
T 4dyl_A 232 LEISSLV----QDEVVAIHREMAAAAARIQPEAEYQGFLRQYGSAPDV-----------PPCVTFDESLLEEGEPLEPGE 296 (406)
T ss_dssp HHHHCSS----SHHHHHHHHHHHHHHHHCCGGGTTHHHHHHHCCCCCC-----------CCCCCCCTTCCC------TTC
T ss_pred HHHHHHh----HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHcCCCCCC-----------CCCCccccCcccccccCCccc
Confidence 3322111 11000 000000 11110000000000000 011222222111111122334
Q ss_pred chhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 006481 525 IPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLN 568 (643)
Q Consensus 525 Ip~DQlRmI~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN 568 (643)
+-.|.++ .+.|-..|+.+..+-+++.+.+......+..|+..-
T Consensus 297 ~~~~e~~-~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~ 339 (406)
T 4dyl_A 297 LQLNELT-VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQEL 339 (406)
T ss_dssp CCCSTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555 678888899999988888888888777777666543
No 33
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=90.75 E-value=13 Score=36.38 Aligned_cols=145 Identities=19% Similarity=0.214 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hHHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 006481 306 LQRSLEASRALSESLAAENSSLTDSYNQQ-RSVV-------------------NQLKSEMEKLQEEIKVQLVELESFRNE 365 (643)
Q Consensus 306 LqR~L~~s~~l~esLa~ENsaLt~~yNqQ-~~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~aE 365 (643)
|..+...-..-++.+|..+..+.+.+..+ ...+ ..+...+++++.++..+...++..+..
T Consensus 77 l~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~ 156 (337)
T 2x3v_A 77 LERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKA 156 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSCSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666677777777777666432 1222 334445677888888888899999988
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhH----HHHHHHH-
Q 006481 366 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQ----STIEALQ- 440 (643)
Q Consensus 366 rdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~----s~i~aLQ- 440 (643)
|..+-.+...|..+....-.+-..=..++.+++...-|++.++..+. ..|...|..+.+-|.... .+++.||
T Consensus 157 Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~---~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~ 233 (337)
T 2x3v_A 157 YHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQ---EKYEKVLEDVGKTTPQYMEGMEQVFEQCQQ 233 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 88877776655433322110000001223333334444445555544 346666666666665544 4455555
Q ss_pred -HH-H-HHHHHHHHhh
Q 006481 441 -EE-K-KMMQSKLRKA 453 (643)
Q Consensus 441 -EE-K-klLqskLRka 453 (643)
|| + ..|...|...
T Consensus 234 le~~Rl~~lk~~l~~~ 249 (337)
T 2x3v_A 234 FEEKRLVFLKEVLLDI 249 (337)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 33 3 3444455544
No 34
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=90.51 E-value=5.6 Score=38.23 Aligned_cols=134 Identities=14% Similarity=0.195 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hHHH------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006481 304 FALQRSLEASRALSESLAAENSSLTDSYNQQ-RSVV------------------NQLKSEMEKLQEEIKVQLVELESFRN 364 (643)
Q Consensus 304 faLqR~L~~s~~l~esLa~ENsaLt~~yNqQ-~~~v------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a 364 (643)
..|..+...-..-++.+|..+..+.+.+..+ ...+ ..+...+++++..++.+...++..+.
T Consensus 63 gs~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~e~~~k~~~~~kerK~~~~~~~k~~k~~~~~~~~l~kaKk 142 (290)
T 3i2w_A 63 GTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKA 142 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCEETTEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666677777777777666332 2222 34455667788888888888888898
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhh----HHHHHHHH
Q 006481 365 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF----QSTIEALQ 440 (643)
Q Consensus 365 ErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l----~s~i~aLQ 440 (643)
.|+.+-.+...|.......-++-..-..++.+++...-|.+..++.+. ..|...|..+.+.|.+. -.+++.||
T Consensus 143 ~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a~---~~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q 219 (290)
T 3i2w_A 143 DYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCR---EKYEQAIAEITKYNSVYIEDMTSVFEKCQ 219 (290)
T ss_dssp HHHHHHHTTTSCC--------------------CTTSSTTTTHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 888877776666543322111111112333344444444444444444 55777777777766653 34556666
No 35
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=90.42 E-value=1.8 Score=35.96 Aligned_cols=75 Identities=23% Similarity=0.350 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHH
Q 006481 339 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 418 (643)
Q Consensus 339 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~ 418 (643)
..+|..|-.|+.+. +......+.+...+..+..|+..+-.||..|.-|+..+ +.+++.+...+..+
T Consensus 2 ~~ikkKm~~lk~e~-------d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~l-------E~eld~~ee~l~~a 67 (81)
T 1ic2_A 2 DAIKKKMQMLKLDK-------ENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGT-------EDELDKYSESLKDA 67 (81)
T ss_dssp CHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 35666665555442 22333333333444444455555555555555554433 44444444444444
Q ss_pred HHHhhhHHH
Q 006481 419 KKKISSLEK 427 (643)
Q Consensus 419 ~~qlsslek 427 (643)
.+++...+|
T Consensus 68 ~~kLeeaek 76 (81)
T 1ic2_A 68 QEKLELADK 76 (81)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHHHH
Confidence 444444433
No 36
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.74 E-value=12 Score=38.33 Aligned_cols=51 Identities=8% Similarity=-0.095 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHh
Q 006481 378 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE 428 (643)
Q Consensus 378 ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssleke 428 (643)
.+.+.....-..+|....+.+...=+.+++.+.++.|..++++-+..+.+.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 344444444444444444444444444444455555555555544444333
No 37
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.58 E-value=11 Score=36.22 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 006481 410 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 443 (643)
Q Consensus 410 ~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEK 443 (643)
+|..|+++.+.....+.-|+..|+.-|..|.-||
T Consensus 101 ~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 101 SLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 38
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.10 E-value=4 Score=34.71 Aligned_cols=81 Identities=19% Similarity=0.335 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh
Q 006481 345 MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS 424 (643)
Q Consensus 345 mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlss 424 (643)
|+.|+++|..-....+.+..|+|+++....+-..+ .| +|+.++..+ -.++-.+++-+-.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~K----------yE--------~E~~~R~~~---E~d~~~LrkdvD~ 60 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK----------LQ--------EEMLQREEA---ENTLQSFRQDVDN 60 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH--------HHHHHHHHH---HHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----------HH--------HHHHHHHHH---HHHHHHHHhhHHH
Confidence 34555555555556666777777765443322111 12 222222222 2345556666777
Q ss_pred HHHhhhhhHHHHHHHHHHHHHH
Q 006481 425 LEKERQDFQSTIEALQEEKKMM 446 (643)
Q Consensus 425 lekeR~~l~s~i~aLQEEKklL 446 (643)
+.--|-+|+.-|+.|+||-.-|
T Consensus 61 a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 61 ASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888888887554
No 39
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.87 E-value=15 Score=31.85 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhH
Q 006481 315 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA 376 (643)
Q Consensus 315 ~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA 376 (643)
+=++.|-.|.+...+++.+--..+.++....+++++||.+-.-.+..+..|.|.++..+..|
T Consensus 9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555555555554444443
No 40
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=85.37 E-value=17 Score=31.20 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006481 312 ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 352 (643)
Q Consensus 312 ~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 352 (643)
.+.+-++++-.+.-.+-++..+-...|..|+..+..++.++
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~el 60 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEV 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444555555555555555555543
No 41
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=84.80 E-value=0.52 Score=51.23 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=9.4
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 006481 361 SFRNEYANVRLECNAADERAKILASEVIGLEEKAL 395 (643)
Q Consensus 361 ~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l 395 (643)
.+.+|-..|+.+...+.|+|..|+.+.-..|+.+.
T Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~ 380 (575)
T 2i1j_A 346 QMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKE 380 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555444444444433
No 42
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.20 E-value=32 Score=33.38 Aligned_cols=27 Identities=15% Similarity=0.021 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006481 286 NEDFAALEQHIEDLTQEKFALQRSLEA 312 (643)
Q Consensus 286 ~~~faaLqqhIeDLT~EKfaLqR~L~~ 312 (643)
.++.+-.....+++.++-..|+..|.-
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~E 35 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVE 35 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433333333333344444433
No 43
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=84.13 E-value=15 Score=31.72 Aligned_cols=71 Identities=20% Similarity=0.375 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006481 290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 360 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le 360 (643)
+.|.+.|++|-.|+-.+-..|...++=.+.|-.+-...-+.||...-.+-++.+++.-+..++..-..-|+
T Consensus 21 ~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd 91 (96)
T 3q8t_A 21 ERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLD 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777777777777777788888877777777777666665544443333
No 44
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.99 E-value=16 Score=32.49 Aligned_cols=71 Identities=17% Similarity=0.276 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHH
Q 006481 334 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ 407 (643)
Q Consensus 334 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlere 407 (643)
-...+.+|++.+..|+-||..+..-.+++..-..-+...+..+....+ .-|..||+.+.++|.+--+.-++
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q---~~i~~lE~eL~~~r~e~~~ql~E 104 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDAR---NKLAELEEALQKAKQDMARLLRE 104 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHH
Confidence 455677778888888887777766666665444444444443333322 33456777777776654443333
No 45
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=82.65 E-value=1.2 Score=48.45 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=16.1
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHH
Q 006481 277 QHGFYSTKHNEDFAALEQHIEDLTQEK 303 (643)
Q Consensus 277 ~~~F~s~~~~~~faaLqqhIeDLT~EK 303 (643)
.|.||......|-.-+||-=.-.-+||
T Consensus 287 ~H~ff~~~r~~d~~e~qqm~~~a~e~~ 313 (575)
T 2i1j_A 287 NHELYMRRRKPDTIDVQQMKAQAREEK 313 (575)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence 678887666666666665444333333
No 46
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.51 E-value=19 Score=31.95 Aligned_cols=59 Identities=27% Similarity=0.290 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 006481 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 395 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l 395 (643)
..+.|+.++.+|+.++..--..+..+..++...+..+..|-.+-+.+..||-.|-.-++
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF 64 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 64 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666655555555556666666555566666666666666665555444
No 47
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=82.40 E-value=15 Score=36.58 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006481 305 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN 364 (643)
Q Consensus 305 aLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~-~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a 364 (643)
.|..+...-..-++.+|..+..+.+++..+- ..+ ..+...+++++..+..+...|+..+.
T Consensus 76 sl~~aw~~i~~e~e~~a~~H~~~a~~l~~~v~~~l~~~~k~~~~k~~~~~~ke~K~~~~~~~k~qk~~~~~~~~l~kaKk 155 (320)
T 3m3w_A 76 TLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKK 155 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666777777777776665431 111 23334556677777777777777777
Q ss_pred HHHHHhhh
Q 006481 365 EYANVRLE 372 (643)
Q Consensus 365 ErdaArle 372 (643)
.|..+-.+
T Consensus 156 ~Y~~~c~e 163 (320)
T 3m3w_A 156 SYHTARKD 163 (320)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77664443
No 48
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=82.28 E-value=8.9 Score=35.12 Aligned_cols=9 Identities=11% Similarity=0.220 Sum_probs=5.1
Q ss_pred CCccccccC
Q 006481 260 DRGDIRRLG 268 (643)
Q Consensus 260 n~v~~~~~~ 268 (643)
|+|.|.+.|
T Consensus 8 ~~V~V~I~G 16 (138)
T 3hnw_A 8 NTAEVILGG 16 (138)
T ss_dssp -CEEEEETT
T ss_pred CeeEEEECC
Confidence 566666666
No 49
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=81.33 E-value=11 Score=32.10 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHH
Q 006481 339 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 418 (643)
Q Consensus 339 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~ 418 (643)
..|+.+++.+..+-..-.+.+.+++...+..+..+..-...-..+-+|+++|=.-+-.+-..-+-||.++++|..|+.=+
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555566666555555555554444455566777776666666666677777777777776543
No 50
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=81.22 E-value=22 Score=32.05 Aligned_cols=100 Identities=13% Similarity=0.199 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHH
Q 006481 335 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE 414 (643)
Q Consensus 335 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E 414 (643)
.+.++.|+....+|+.++ +..++||+--.-. -.+-...-.++|-.|-+++..-=+.-..|++....++
T Consensus 5 ~~~~~~lq~~~~ql~~qL-------~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q-- 72 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQL-------EKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAK-- 72 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 455666666666666642 3333333332222 3344445677888888888755333333333333333
Q ss_pred HHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 006481 415 ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 447 (643)
Q Consensus 415 ~~s~~~qlsslekeR~~l~s~i~aLQEEKklLq 447 (643)
+....++..|..+|..+..-+..||.|---|.
T Consensus 73 -~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 73 -RDVQEQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp -HHHHHHHHHHHHHHHHHHTC------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 33456677788888888888888888765544
No 51
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.52 E-value=39 Score=31.88 Aligned_cols=86 Identities=15% Similarity=0.185 Sum_probs=47.4
Q ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHH
Q 006481 359 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 438 (643)
Q Consensus 359 le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~a 438 (643)
+..+..++...+.....|-.+-+.+..||-.|-.-++.- - -+=+..++-+...+++++..|++.=.+-...|+.
T Consensus 60 ~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeE---A---N~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~ 133 (154)
T 2ocy_A 60 VKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE---A---NNMVADARKEKYAIEILNKRLTEQLREKDTLLDT 133 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444555555556666666665554422 1 1122233444455566666666666666778888
Q ss_pred HHHHHHHHHHHH
Q 006481 439 LQEEKKMMQSKL 450 (643)
Q Consensus 439 LQEEKklLqskL 450 (643)
||++-..|+.-+
T Consensus 134 lq~ql~~LK~v~ 145 (154)
T 2ocy_A 134 LTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 888877776543
No 52
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.25 E-value=18 Score=32.31 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHH
Q 006481 334 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ 407 (643)
Q Consensus 334 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlere 407 (643)
-...+.+|+..+..|+-||+.+..-.+++..-..-+...+..+.... -.-|..||+.+.++|.+--+.-++
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~---q~~i~~lE~eL~~~r~em~~ql~E 106 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQI---QEMIGSVEEQLAQLRCEMEQQNQE 106 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557777777777777777776666666444444444443333332 233455777777776654443333
No 53
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=79.13 E-value=34 Score=30.31 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006481 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA 322 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ 322 (643)
..++.|.+.|++++.||-.|+-.+...+..++.+-.
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~ 55 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999888888877776543
No 54
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=78.94 E-value=7.2 Score=37.84 Aligned_cols=8 Identities=63% Similarity=0.966 Sum_probs=0.0
Q ss_pred CcccchHH
Q 006481 612 ADEGDEVV 619 (643)
Q Consensus 612 ~degdevv 619 (643)
..+||.||
T Consensus 324 L~~Gd~VV 331 (341)
T 3fpp_A 324 LEAGDEVV 331 (341)
T ss_dssp --------
T ss_pred CCCCCEEE
Confidence 45666655
No 55
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=77.60 E-value=48 Score=31.20 Aligned_cols=66 Identities=8% Similarity=0.147 Sum_probs=39.1
Q ss_pred HHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHH
Q 006481 355 QLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK 420 (643)
Q Consensus 355 Q~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~ 420 (643)
+.-.+..+..-...|-.++..|--....|-.+|--||+++...+-.-..+..+|...-.++..+..
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~ 140 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLS 140 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333344444445555556666666667777777777777776666666666666655555554433
No 56
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=77.49 E-value=9.8 Score=37.22 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=3.4
Q ss_pred hCCCCCc
Q 006481 454 SGSGKSI 460 (643)
Q Consensus 454 ~~~gk~~ 460 (643)
+-.|.+.
T Consensus 160 P~~G~V~ 166 (369)
T 4dk0_A 160 PIDGTVI 166 (369)
T ss_dssp SCCSCCC
T ss_pred CCCeEEE
Confidence 4455543
No 57
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=76.46 E-value=54 Score=33.45 Aligned_cols=33 Identities=3% Similarity=0.072 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006481 292 LEQHIEDLTQEKFALQRSLEASRALSESLAAEN 324 (643)
Q Consensus 292 LqqhIeDLT~EKfaLqR~L~~s~~l~esLa~EN 324 (643)
+...|+.+-.-+....-+|+..++-++.+-+++
T Consensus 357 ~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~ 389 (471)
T 3mq9_A 357 VRTAVINAASGRQTVDEALKDAQTRITAARDGL 389 (471)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 444444443333344445555555554444444
No 58
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=75.95 E-value=55 Score=31.08 Aligned_cols=85 Identities=20% Similarity=0.125 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 006481 292 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 371 (643)
Q Consensus 292 LqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArl 371 (643)
+++++..+..++......|+++++.-+.+..|-+.+...+..-..-.+.=+.++++++..+......++..+.||..+..
T Consensus 114 ~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~ 193 (301)
T 2efk_A 114 HFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQ 193 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666677777777777777776666654322111111235566666665555666777888888888
Q ss_pred hhhhH
Q 006481 372 ECNAA 376 (643)
Q Consensus 372 e~~aA 376 (643)
.++..
T Consensus 194 ~~n~~ 198 (301)
T 2efk_A 194 RFNRD 198 (301)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77777
No 59
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=75.73 E-value=33 Score=31.06 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=13.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 006481 428 ERQDFQSTIEALQEEKKMMQSKL 450 (643)
Q Consensus 428 eR~~l~s~i~aLQEEKklLqskL 450 (643)
+|..+...++.|+++-..||.++
T Consensus 84 dREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 84 AREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHHHHHHHHH
Confidence 34445555666666666666544
No 60
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=75.60 E-value=47 Score=30.14 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHhhhhhhH
Q 006481 298 DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL-ESFRNEYANVRLECNAA 376 (643)
Q Consensus 298 DLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l-e~l~aErdaArle~~aA 376 (643)
.|+.|.-.|...+.........+..+|..|...|-........|+..+..++.+.+ .+ +.-..|+.+......++
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~----~l~ek~~~e~~~le~~L~e~ 101 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYD----LAKESTSWDRQRLEKELEEK 101 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555666667777777666666665666655544443321 11 22233333332222333
Q ss_pred HHHH---HHHH-HHHHhHHHHHHHHhhhhhhhHHHHhhh
Q 006481 377 DERA---KILA-SEVIGLEEKALRLRSNELKLERQLENS 411 (643)
Q Consensus 377 ~ERa---k~LA-aEVV~LEEk~l~LRS~eLKlerele~l 411 (643)
.+.. ..-+ -+++.++.+-+.+.-..+.++++|+.+
T Consensus 102 ~e~~~~~l~~~~e~~~~~~~~~~e~~~~~~~~ek~ls~A 140 (155)
T 2oto_A 102 KEALELAIDQASRDYHRATALEKELEEKKKALELAIDQA 140 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 1111 123355555555666666666666654
No 61
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=75.47 E-value=27 Score=32.04 Aligned_cols=70 Identities=21% Similarity=0.281 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 006481 298 DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 367 (643)
Q Consensus 298 DLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErd 367 (643)
.||+-.-.|.++-.++---.+++.+=+.+|...--+.-..|.+|+.+++.|.+.++-..++++.++.+-.
T Consensus 33 qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 33 ELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 6888888888888888777777777777777655555567999999999999999998888888877655
No 62
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=74.51 E-value=16 Score=31.78 Aligned_cols=52 Identities=23% Similarity=0.212 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 006481 373 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 425 (643)
Q Consensus 373 ~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssl 425 (643)
.-|+.=|.|.+ .++..||.....|..+--+|.+|+..+..|+..|+.+.++|
T Consensus 37 gyAq~CR~Kr~-~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 37 GYAQSCRYKRV-QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788988 68899999999888877777788778887877777777654
No 63
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=73.67 E-value=18 Score=31.19 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006481 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 362 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 362 (643)
+=|..|++-|+.+-. .+.|+ +--.+.|-.+|..|....++-.+....|..+.++|++|..+-...+.++
T Consensus 6 ElleqLE~KIq~avd-tI~lL------qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 6 EVFEKLEAKVQQAID-TITLL------QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777776543 33332 2345667777777777777777777788888888888866655544443
No 64
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=73.33 E-value=15 Score=32.66 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhCCC
Q 006481 429 RQDFQSTIEALQEEKKMMQSKLRKASGSG 457 (643)
Q Consensus 429 R~~l~s~i~aLQEEKklLqskLRka~~~g 457 (643)
++.....++.||.|-..|..+||++-.+|
T Consensus 70 ~~~~~~~~e~Lq~E~erLr~~v~~lEeg~ 98 (100)
T 1go4_E 70 RQRLREDHSQLQAECERLRGLLRAMERGG 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44467899999999999999999987744
No 65
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=73.25 E-value=9.7 Score=30.28 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=25.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH
Q 006481 330 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA 380 (643)
Q Consensus 330 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa 380 (643)
+.++....|.+|..++.+|+.+|.+ ++.+..+|+-|+..|.+|-
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~a-------l~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANA-------ARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Confidence 3445556666666666666665543 4445556666666666663
No 66
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=73.14 E-value=17 Score=32.78 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhhhHHHh----hhhhHHHHHHHHHHHHHHHHHHHhh
Q 006481 411 SQSEISSYKKKISSLEKE----RQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 411 l~~E~~s~~~qlssleke----R~~l~s~i~aLQEEKklLqskLRka 453 (643)
|..|+++++.|+....++ =..||..|..|+.++..|+.+||..
T Consensus 15 L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReL 61 (111)
T 2v66_B 15 LKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333 3347777778888888888888876
No 67
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=72.91 E-value=22 Score=30.05 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=27.7
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006481 360 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 397 (643)
Q Consensus 360 e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L 397 (643)
..+-.|+...+..|.+|.||...|.+.-+.||.++-.+
T Consensus 45 ~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 45 VTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444448899999999999999999888765
No 68
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=71.52 E-value=15 Score=31.69 Aligned_cols=55 Identities=25% Similarity=0.314 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHH---hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 006481 344 EMEKLQEEIKVQLVE---LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 398 (643)
Q Consensus 344 ~mE~Lq~Ei~aQ~~~---le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR 398 (643)
.-..|+.||++..+. |..+++.--+++-...+|..|-+.|..|+-.|++++..||
T Consensus 15 LQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 15 LQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777777653 4445666666666777777788888777777777776654
No 69
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=71.04 E-value=7 Score=41.10 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=38.6
Q ss_pred HHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 006481 384 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 459 (643)
Q Consensus 384 AaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~~gk~ 459 (643)
..|.+.||+++..+|-..-+++++.+.+..++..++.|+-..+ .++|.|+-.|..+-++=++
T Consensus 2 ~~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~--------------~~rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 2 GSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSN--------------MERKELHNTVMDLRDNIRV 63 (412)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHTCSEEE
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhCCCEEE
Confidence 3567777777777777767777777777777777766655433 4455555555555443333
No 70
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=69.27 E-value=43 Score=35.57 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHH
Q 006481 374 NAADERAKILASEVIGLEEKALRL 397 (643)
Q Consensus 374 ~aA~ERak~LAaEVV~LEEk~l~L 397 (643)
+.++..++.+-.|++.||..++..
T Consensus 80 e~~tq~skkml~~~~~~e~~~~~~ 103 (409)
T 1m1j_C 80 EQLTQKSKKIIEEIIRYENTILAH 103 (409)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcch
Confidence 445777777777777777765543
No 71
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=67.12 E-value=9.7 Score=37.19 Aligned_cols=55 Identities=20% Similarity=0.393 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006481 297 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 351 (643)
Q Consensus 297 eDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 351 (643)
|-||+=|-+++-.|+.+-.+++.|..||..|++.--..-..+.+|++++.-++++
T Consensus 2 d~~~~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 2 DPLTVYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578889999999999999999999999999877665555556665555555444
No 72
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=66.28 E-value=11 Score=39.36 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=29.0
Q ss_pred HHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhh
Q 006481 384 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER 429 (643)
Q Consensus 384 AaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR 429 (643)
|+++..|++++..++...-+++++++.+..++..++.++...+..|
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r 47 (403)
T 4etp_A 2 ASKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVR 47 (403)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888887777777777777777766666666655443333
No 73
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=66.23 E-value=38 Score=30.58 Aligned_cols=90 Identities=17% Similarity=0.195 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 006481 288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 367 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErd 367 (643)
-+..|..-|+.|. ..|.+-...++..+.+|-. .|++|+.+++.-+...+--+.+++.++.|.+
T Consensus 16 ~Ie~Lkreie~lk---~ele~l~~E~q~~v~ql~~--------------~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 16 LIERLYREISGLK---AQLENMKTESQRVVLQLKG--------------HVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666555553 3344445555555555543 3444444444444333333444555555555
Q ss_pred HH----------hhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 006481 368 NV----------RLECNAADERAKILASEVIGLEEKALRLRSNE 401 (643)
Q Consensus 368 aA----------rle~~aA~ERak~LAaEVV~LEEk~l~LRS~e 401 (643)
.. +..+.+|..||+. -|+|..+||...
T Consensus 79 ~l~~~~~~~~~~q~~~~e~E~kAqa-------~Eerf~KLKe~y 115 (120)
T 3i00_A 79 ELRRQREDTEKAQRSLSEIERKAQA-------NEQRYSKLKEKY 115 (120)
T ss_dssp HHHTTCC-------------------------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 43 3344455555543 355655555443
No 74
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=65.75 E-value=27 Score=33.16 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHhh
Q 006481 378 ERAKILASEVIGLEEKALRLRS 399 (643)
Q Consensus 378 ERak~LAaEVV~LEEk~l~LRS 399 (643)
..++.|+.|+..|..++...|.
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999888776654
No 75
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=65.21 E-value=70 Score=35.13 Aligned_cols=78 Identities=18% Similarity=0.260 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 006481 288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 367 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErd 367 (643)
|.++.|+.=.|+ |-+++-+|+.-++=...+.+||+++-. .|+++ ..+-..++++++.+++++..+ .+||+
T Consensus 17 elarvqkana~a---ka~Ye~~~ae~~a~n~~i~aeNeaikk-rNa~a--ka~Ye~~l~kY~~dlakY~~~----~AeY~ 86 (497)
T 3iox_A 17 ELARVQKANADA---KAAYEAAVAANNAANAALTAENTAIKK-RNADA--KADYEAKLAKYQADLAKYQKD----LADYP 86 (497)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 334444443333 556777777777777778889998864 45554 223334677777777666555 45555
Q ss_pred HHhhhhhh
Q 006481 368 NVRLECNA 375 (643)
Q Consensus 368 aArle~~a 375 (643)
+....+.+
T Consensus 87 ~kl~aYe~ 94 (497)
T 3iox_A 87 VKLKAYED 94 (497)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444443
No 76
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.33 E-value=65 Score=35.83 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=17.5
Q ss_pred HHHHhHHHHHHHHhhhhhhhHHHHhh
Q 006481 385 SEVIGLEEKALRLRSNELKLERQLEN 410 (643)
Q Consensus 385 aEVV~LEEk~l~LRS~eLKlerele~ 410 (643)
.-+-.|+.-|..+|+.-.|||..+.-
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777777777776554
No 77
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=64.07 E-value=71 Score=27.58 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=24.3
Q ss_pred HHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 006481 385 SEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 440 (643)
Q Consensus 385 aEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ 440 (643)
.=+-.|+..|.+. +.++..+..++..++..+....+++..+..+.+.-.
T Consensus 74 ~fi~~L~~~I~~q-------~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~ 122 (150)
T 3ajw_A 74 QFIQTLEKAIEQH-------RLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQT 122 (150)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555444 334444455555555555555555555555544433
No 78
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=63.96 E-value=19 Score=28.68 Aligned_cols=29 Identities=10% Similarity=0.208 Sum_probs=13.7
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHH
Q 006481 317 SESLAAENSSLTDSYNQQRSVVNQLKSEM 345 (643)
Q Consensus 317 ~esLa~ENsaLt~~yNqQ~~~v~qLk~~m 345 (643)
+++|..+-..|+.+..+..+.|+.|+.++
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v 34 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDA 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444444444444444
No 79
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.91 E-value=29 Score=32.24 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=36.1
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHH
Q 006481 365 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 444 (643)
Q Consensus 365 ErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKk 444 (643)
++...+.....|-.+-+.+..||-.|-.-++.- - -+=+..++-+...+++++..|++.-.+-...|+.+|++-+
T Consensus 54 ~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeE---A---N~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~ 127 (135)
T 2e7s_A 54 DIAKENELRTKAEEEADKLNKEVEDLTASLFDE---A---NNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLK 127 (135)
T ss_dssp HHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHH---H---HHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444555555566666766666555422 1 1223334455555666666666666667777888887776
Q ss_pred HHHH
Q 006481 445 MMQS 448 (643)
Q Consensus 445 lLqs 448 (643)
.|+.
T Consensus 128 ~LK~ 131 (135)
T 2e7s_A 128 NLKK 131 (135)
T ss_dssp ----
T ss_pred HHHH
Confidence 6654
No 80
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=63.69 E-value=73 Score=27.54 Aligned_cols=94 Identities=15% Similarity=0.097 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-------Hh------hHHHHHHHHHHHHHHHHHHHHHH
Q 006481 291 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN-------QQ------RSVVNQLKSEMEKLQEEIKVQLV 357 (643)
Q Consensus 291 aLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yN-------qQ------~~~v~qLk~~mE~Lq~Ei~aQ~~ 357 (643)
.|+..++=-..+.-...+.|.+++...+.....-..|...++ .. ...+-....=+..|...|..|..
T Consensus 9 ~L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~ 88 (150)
T 3ajw_A 9 ALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666666655555555555544332 21 22344566778888888999999
Q ss_pred HhhhhHHHHHHHhhhhhhHHHHHHHHH
Q 006481 358 ELESFRNEYANVRLECNAADERAKILA 384 (643)
Q Consensus 358 ~le~l~aErdaArle~~aA~ERak~LA 384 (643)
.+..+..+.+.++....+|.-+-+++.
T Consensus 89 ~l~~~~~~~e~~r~~l~~a~~~~k~~e 115 (150)
T 3ajw_A 89 QLTQWTQKVDLALKSWREKKQRLQAWQ 115 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888888777764
No 81
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=62.82 E-value=12 Score=33.15 Aligned_cols=42 Identities=26% Similarity=0.453 Sum_probs=34.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHh
Q 006481 329 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES--FRNEYANVR 370 (643)
Q Consensus 329 ~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~--l~aErdaAr 370 (643)
+.||.-+..|..|..+.++|+++++...+.|+. ++.+|+...
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~ 55 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSR 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcc
Confidence 578999999999999999999999888888877 567777643
No 82
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=62.57 E-value=38 Score=28.91 Aligned_cols=69 Identities=10% Similarity=0.151 Sum_probs=27.9
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHH
Q 006481 363 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQS 434 (643)
Q Consensus 363 ~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s 434 (643)
.+|++.+.+...++-.|-+.|--.|-.||.++-.-|+..-.++.|+..+. ..+.-||-.|.-=|+.|.+
T Consensus 5 ~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~---e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 5 AAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA---QLLDVSLFELSELREGLAR 73 (79)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444443333 3334444444444444433
No 83
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=62.12 E-value=84 Score=27.72 Aligned_cols=42 Identities=14% Similarity=0.351 Sum_probs=22.4
Q ss_pred HHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 006481 406 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 447 (643)
Q Consensus 406 rele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLq 447 (643)
++|+.-..|+..++..++..+.+=..+-+.+.+++.||..|-
T Consensus 61 ~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 61 QELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555555555556666666665553
No 84
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=61.34 E-value=20 Score=34.70 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=5.8
Q ss_pred HhhhhHHHHHHHhh
Q 006481 358 ELESFRNEYANVRL 371 (643)
Q Consensus 358 ~le~l~aErdaArl 371 (643)
.++..+++++.|+.
T Consensus 84 ~l~~a~~~~~~a~~ 97 (341)
T 3fpp_A 84 QRQQAEAELKLARV 97 (341)
T ss_dssp HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 85
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=61.27 E-value=14 Score=32.90 Aligned_cols=40 Identities=25% Similarity=0.256 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHH
Q 006481 545 LEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLEL 584 (643)
Q Consensus 545 ~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLEL 584 (643)
.||..++++....+..+.+|+..+.||.++|+.++..+.-
T Consensus 4 ~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e 43 (125)
T 1joc_A 4 DERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQE 43 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888899999999999999999999999999998877653
No 86
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=60.56 E-value=1.2e+02 Score=29.65 Aligned_cols=87 Identities=10% Similarity=0.095 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006481 290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 369 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaA 369 (643)
..++..++.+..++......|.++++.=+.+..|-+.....++.......--..++++++..+.-....+...+.||..+
T Consensus 130 K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~ 209 (337)
T 2x3v_A 130 KEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKV 209 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666667777777777776665544444432211000012455666665555555666777888887
Q ss_pred hhhhhhH
Q 006481 370 RLECNAA 376 (643)
Q Consensus 370 rle~~aA 376 (643)
...++.+
T Consensus 210 v~~~n~~ 216 (337)
T 2x3v_A 210 LEDVGKT 216 (337)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777766
No 87
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=60.22 E-value=77 Score=35.24 Aligned_cols=75 Identities=15% Similarity=0.297 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHH--HHHHhhHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006481 292 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSS-LTD--SYNQQRSVVN-QLKSEMEKLQEEIKVQLVELESFRNEY 366 (643)
Q Consensus 292 LqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsa-Lt~--~yNqQ~~~v~-qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 366 (643)
|-+-|+||..+-+.|++.-.-+...+..+-++-.. ++. ..+..-.+|. +|++.++.|+++|+.|+.-+.+|+.=.
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnL 140 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNV 140 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899988888887766666655555443211 111 1111222233 677788888888888886666665433
No 88
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=59.88 E-value=22 Score=28.08 Aligned_cols=35 Identities=34% Similarity=0.500 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 006481 314 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 348 (643)
Q Consensus 314 ~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L 348 (643)
++-+..|+.-|..|+.-..+-+.++..|+++|++|
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44457888899999988888888888888888776
No 89
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=59.82 E-value=9.4 Score=38.55 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=17.3
Q ss_pred HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 006481 316 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 349 (643)
Q Consensus 316 l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq 349 (643)
-.++|...|..|.+..++-..++..||+++++|+
T Consensus 62 ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 62 RIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345555555555555555555555555544443
No 90
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=59.05 E-value=55 Score=26.00 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=25.3
Q ss_pred HHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 006481 415 ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 451 (643)
Q Consensus 415 ~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLR 451 (643)
+..+..++..|+++-..|...|..|++|+..|...|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666777778888888877776654
No 91
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=58.98 E-value=23 Score=31.84 Aligned_cols=39 Identities=26% Similarity=0.488 Sum_probs=27.4
Q ss_pred HHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006481 415 ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 415 ~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
++..+.++..+..+-.+|...++.|..|+---..|||++
T Consensus 13 L~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdI 51 (106)
T 4e61_A 13 LTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDI 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555668888888888888888999986
No 92
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=58.81 E-value=63 Score=34.55 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHH
Q 006481 374 NAADERAKILASEVIGLEEKALRLRSNELKLER 406 (643)
Q Consensus 374 ~aA~ERak~LAaEVV~LEEk~l~LRS~eLKler 406 (643)
+.+.+.++.+-.|+..||.-+....++-..|+.
T Consensus 80 ~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~ 112 (411)
T 3ghg_C 80 DAATLKSRKMLEEIMKYEASILTHDSSIRYLQE 112 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 568889998888888887666654443333333
No 93
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=58.47 E-value=95 Score=33.24 Aligned_cols=90 Identities=21% Similarity=0.359 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhhHH--------HHHHHHh-hHHHHHHHHHHHHHHHH
Q 006481 291 ALEQHIEDLTQEKFALQRSLEASRALSESL----------AAENSSL--------TDSYNQQ-RSVVNQLKSEMEKLQEE 351 (643)
Q Consensus 291 aLqqhIeDLT~EKfaLqR~L~~s~~l~esL----------a~ENsaL--------t~~yNqQ-~~~v~qLk~~mE~Lq~E 351 (643)
-+..-|++|+.+.+.|+|...-..-.+-.+ +.+|+.. -++++-. .-+-+++. .|..||..
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~ 142 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKN 142 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence 456788888888888887765543333222 2233322 2222221 22233444 55566666
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhhHHHHHH
Q 006481 352 IKVQLVELESFRNEYANVRLECNAADERAK 381 (643)
Q Consensus 352 i~aQ~~~le~l~aErdaArle~~aA~ERak 381 (643)
|+.|+++...|....|-.+-.|.-+=.|+-
T Consensus 143 l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l 172 (390)
T 1deq_A 143 VRDQLVDMKRLEVDIDIKIRSCKGSCSRAL 172 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchhh
Confidence 666666666665556666666666555543
No 94
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=58.04 E-value=99 Score=27.25 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh--hH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 006481 295 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQ--RS--VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 370 (643)
Q Consensus 295 hIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ--~~--~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaAr 370 (643)
||+=| ++.-...+-|..++...+.+..+-..|.+++.+- .. ...+-...|+.|++||.....+|..|+..++...
T Consensus 3 Hi~LL-RK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~ 81 (107)
T 2no2_A 3 HADLL-RKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSA 81 (107)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 2344455556666666666666666666665551 11 1122233445555555555555555666555544
Q ss_pred hhhh
Q 006481 371 LECN 374 (643)
Q Consensus 371 le~~ 374 (643)
++--
T Consensus 82 ~~~~ 85 (107)
T 2no2_A 82 QSEA 85 (107)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 95
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=57.63 E-value=1.3e+02 Score=28.36 Aligned_cols=18 Identities=39% Similarity=0.507 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHhHHH
Q 006481 375 AADERAKILASEVIGLEE 392 (643)
Q Consensus 375 aA~ERak~LAaEVV~LEE 392 (643)
.|-||+...-+-|..||+
T Consensus 32 raEERae~aE~k~~eLEe 49 (155)
T 2efr_A 32 RAEERAELSEGKSAELEE 49 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 96
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=57.55 E-value=63 Score=24.81 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006481 303 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 353 (643)
Q Consensus 303 KfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 353 (643)
+-.|++-+....+....+-.+-+.+..+||+....++...++|..++.+|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555554555555566666777788877788888888777766554
No 97
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=57.27 E-value=2.1e+02 Score=31.57 Aligned_cols=100 Identities=17% Similarity=0.342 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHH
Q 006481 341 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK 420 (643)
Q Consensus 341 Lk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~ 420 (643)
-+.++..+|.|++.=..+.+..+++|.++..+..+...+ +.+ |..+.+-|-...|..= ..++..|++
T Consensus 7 yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~---i~a-----eNeaikkrNa~aka~Y-----e~~l~kY~~ 73 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAA---LTA-----ENTAIKKRNADAKADY-----EAKLAKYQA 73 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-----HHHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHH-----HHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 344555555555555555666666666665555554433 222 3333333333333221 123455666
Q ss_pred HhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006481 421 KISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 421 qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
.+....++--+-+.-+.+-|+|++..+..|-++
T Consensus 74 dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ 106 (497)
T 3iox_A 74 DLAKYQKDLADYPVKLKAYEDEQTSIKAALAEL 106 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666677777888887777666543
No 98
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=56.07 E-value=1.3e+02 Score=28.09 Aligned_cols=138 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHH
Q 006481 306 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS 385 (643)
Q Consensus 306 LqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAa 385 (643)
|..+...-...++.+|..+..+.+.+|+-...+..+..++++.+..++........+..++..+......|..+=...+.
T Consensus 71 ~~~~w~~~~~~~e~~a~~h~~~a~~l~~~~~~l~~~~~~~~~~rK~~~~~~~~~~~~~~~~~~~~~~l~Kak~~Y~~~c~ 150 (276)
T 2v0o_A 71 FAPVWDVFKTSTEKLANCHLDLVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCV 150 (276)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHH------HHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH--HHHHHHHHH
Q 006481 386 EVIGLE------EKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ--EEKKMMQSK 449 (643)
Q Consensus 386 EVV~LE------Ek~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ--EEKklLqsk 449 (643)
|+-.+. .++.+++..--|.+.+..........++.+.... +..+++.|| ||.++..-|
T Consensus 151 e~e~~~~~~~s~k~~eK~~~k~~ka~~~Y~~~v~~~n~~~~~~~~~------~~~~~~~lQ~le~~R~~~lk 216 (276)
T 2v0o_A 151 EQERLKKEGATQREIEKAAVKSKKATDTYKLYVEKYALAKADFEQK------MTETAQKFQDIEETHLIHIK 216 (276)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
No 99
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=55.67 E-value=60 Score=25.46 Aligned_cols=50 Identities=24% Similarity=0.318 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006481 303 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 352 (643)
Q Consensus 303 KfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 352 (643)
+.+-+|-=++-.+-++.|..+...|+....+....|..|+.++.+|.+.+
T Consensus 10 r~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 10 RAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555666677777888888888777777778888888887777653
No 100
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=55.63 E-value=30 Score=29.89 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=14.1
Q ss_pred HHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006481 417 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 450 (643)
Q Consensus 417 s~~~qlsslekeR~~l~s~i~aLQEEKklLqskL 450 (643)
.|++++.+-..|=..|+-.++.=.-|-+.||.+|
T Consensus 44 QyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 44 QYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444333333333333333334445555554
No 101
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=53.57 E-value=2e+02 Score=29.34 Aligned_cols=10 Identities=10% Similarity=0.096 Sum_probs=4.8
Q ss_pred ccccc-cccCC
Q 006481 275 ENQHG-FYSTK 284 (643)
Q Consensus 275 e~~~~-F~s~~ 284 (643)
-.|-. |..+.
T Consensus 291 ~~Fi~~~l~s~ 301 (471)
T 3mq9_A 291 KEFLENYLLTD 301 (471)
T ss_dssp HHHHHHTTSSH
T ss_pred HHHHHHHhcCH
Confidence 34553 65544
No 102
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=52.22 E-value=94 Score=26.45 Aligned_cols=62 Identities=23% Similarity=0.263 Sum_probs=42.2
Q ss_pred HHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006481 385 SEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 385 aEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
.-|..||..+...+...+.+..+++.++.||.+++-+++.+ .--|+.|++.-|-++.-|-++
T Consensus 6 ~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~-------~~~l~ql~~rQrd~Y~dLD~R 67 (83)
T 2xdj_A 6 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQEN-------QYQLNQVVERQKQILLQIDSL 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 34445554333333456888999999999999999999963 445666777666666655433
No 103
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=52.13 E-value=2.8e+02 Score=30.60 Aligned_cols=16 Identities=6% Similarity=0.268 Sum_probs=12.2
Q ss_pred chhhHHHHHHHHHHHH
Q 006481 285 HNEDFAALEQHIEDLT 300 (643)
Q Consensus 285 ~~~~faaLqqhIeDLT 300 (643)
...+|..|.++|.+.-
T Consensus 308 ~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 308 DGTGFPKFMDSLNTFL 323 (695)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHH
Confidence 5678999998887643
No 104
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=51.76 E-value=28 Score=34.59 Aligned_cols=39 Identities=10% Similarity=0.258 Sum_probs=33.8
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 006481 325 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 363 (643)
Q Consensus 325 saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~ 363 (643)
.-|+.+||+-...+..|...+++.+.|+..|.+-++..+
T Consensus 167 ~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~ 205 (228)
T 3q0x_A 167 QFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCR 205 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999888887765
No 105
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=51.63 E-value=94 Score=27.11 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=58.3
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006481 278 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 357 (643)
Q Consensus 278 ~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~ 357 (643)
-||-+=-....-..|++.|++|..|--.-.++-+.-..|. .+-.+|+++-|--. +...+.+....|+.|+.++.-...
T Consensus 6 ~d~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~-~vY~~nP~~GD~~s-~~~~L~e~~~kid~L~~el~K~q~ 83 (98)
T 2ke4_A 6 EDFSHLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMK-DVYEKTPQMGDPAS-LEPQIAETLSNIERLKLEVQKYEA 83 (98)
T ss_dssp SCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-HHHHHCGGGCCGGG-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555667778999999999988666666655544443 45678888864433 377888889999999988766655
Q ss_pred Hhhhh
Q 006481 358 ELESF 362 (643)
Q Consensus 358 ~le~l 362 (643)
-|+.+
T Consensus 84 ~L~e~ 88 (98)
T 2ke4_A 84 WLAEA 88 (98)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 106
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=51.51 E-value=33 Score=26.96 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=18.5
Q ss_pred HHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006481 417 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 450 (643)
Q Consensus 417 s~~~qlsslekeR~~l~s~i~aLQEEKklLqskL 450 (643)
.++.++..++.+-..|...|..|++|...|...|
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445555556666666666666555543
No 107
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.36 E-value=41 Score=31.29 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=33.8
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHH--------HHHHhhhHHHhhhhhH
Q 006481 362 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS--------YKKKISSLEKERQDFQ 433 (643)
Q Consensus 362 l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s--------~~~qlsslekeR~~l~ 433 (643)
++.+++.+..+... +-.|+..|-+++.+.|.--...|.+...+..|++. .++-|..+.++|..+.
T Consensus 30 l~~~l~~l~~~l~~-------~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e 102 (135)
T 2e7s_A 30 LKEDYNTLKRELSD-------RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIE 102 (135)
T ss_dssp HHHHHHHHHHHTTT-------HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544322 22333334444444433334444444444444443 3445566666666655
Q ss_pred HHHHHHH
Q 006481 434 STIEALQ 440 (643)
Q Consensus 434 s~i~aLQ 440 (643)
--++-|+
T Consensus 103 ~r~~~L~ 109 (135)
T 2e7s_A 103 ILNKRLT 109 (135)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555555
No 108
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=51.30 E-value=67 Score=30.75 Aligned_cols=90 Identities=13% Similarity=0.150 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006481 290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 369 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaA 369 (643)
..+++++..+..++-.....|+++++.-+.+..|-+.....+..-.+-.+.-..++++++..++-....+...+.||..+
T Consensus 117 K~~~~~~~k~~k~~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a~~~Y~~~ 196 (290)
T 3i2w_A 117 KDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQA 196 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC--------------------CTTSSTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666677777888888888888876655554432211111123455555544444444556667777777
Q ss_pred hhhhhhHHHH
Q 006481 370 RLECNAADER 379 (643)
Q Consensus 370 rle~~aA~ER 379 (643)
...++....+
T Consensus 197 v~~~n~~~~~ 206 (290)
T 3i2w_A 197 IAEITKYNSV 206 (290)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhHH
Confidence 7777776443
No 109
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=50.96 E-value=69 Score=25.41 Aligned_cols=51 Identities=27% Similarity=0.360 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006481 303 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 353 (643)
Q Consensus 303 KfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 353 (643)
|.|-.|-=++-++.++.|..+...|...-......|.+|+.++.+|...+.
T Consensus 11 R~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 11 KMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666667777777777766666666667777777777766543
No 110
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=50.78 E-value=1.1e+02 Score=25.73 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=12.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 006481 333 QQRSVVNQLKSEMEKLQEEIK 353 (643)
Q Consensus 333 qQ~~~v~qLk~~mE~Lq~Ei~ 353 (643)
.+...|.++..++..++..+.
T Consensus 11 ~~eeEm~~~eeel~~lke~l~ 31 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLA 31 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666543
No 111
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=50.66 E-value=31 Score=27.21 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006481 303 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 353 (643)
Q Consensus 303 KfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 353 (643)
+.|-+|-=++-.+-++.|..+...|+..-......|..|+.++.+|.+.+.
T Consensus 10 r~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 10 RIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666677777777777777766667777777777776666543
No 112
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=49.58 E-value=93 Score=26.49 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=19.0
Q ss_pred HHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006481 321 AAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 362 (643)
Q Consensus 321 a~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 362 (643)
....+.|-......++.+.++.-+|+++++.-+..-..|+..
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~R 67 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSL 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555555555555554444433444333
No 113
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=49.29 E-value=1.2e+02 Score=27.72 Aligned_cols=70 Identities=9% Similarity=0.220 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006481 292 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 361 (643)
Q Consensus 292 LqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt-~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~ 361 (643)
|++..+++|.---.|--+-++-++-.+........+- .-|-++.++|+.|+.++.+|++.++.+..+...
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~k~ 94 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIATGKN 94 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5566666666656666666666655555555555443 346778899999999999999987766654433
No 114
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase family 9, phosphotransfer, transferase two-component system; 2.30A {Rhodopseudomonas palustris}
Probab=48.05 E-value=1.5e+02 Score=26.36 Aligned_cols=32 Identities=19% Similarity=0.126 Sum_probs=21.0
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhh
Q 006481 372 ECNAADERAKILASEVIGLEEKALRLRSNELK 403 (643)
Q Consensus 372 e~~aA~ERak~LAaEVV~LEEk~l~LRS~eLK 403 (643)
.+...+.+-+.+..+++.-|.+.+..|....+
T Consensus 117 ~Gk~~md~iR~~~~~~~~~E~~lL~~R~~~~~ 148 (164)
T 3va9_A 117 RVDRLTERIETSLSVLTRAEQALLIQRLSKHD 148 (164)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888888888887776653
No 115
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=47.91 E-value=1e+02 Score=24.29 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=33.8
Q ss_pred HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 006481 390 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 447 (643)
Q Consensus 390 LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLq 447 (643)
|+.+|..+.....-+++-+..++.++..+..++++....-...+..|++|......|.
T Consensus 3 ~~~~~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~ 60 (66)
T 3m0a_A 3 LLQRCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 4444544433444445555666667777777777765554455666777665554444
No 116
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=47.70 E-value=1.7e+02 Score=26.84 Aligned_cols=24 Identities=4% Similarity=0.160 Sum_probs=17.7
Q ss_pred cccccCCchhhHH-HHHHHHHHHHH
Q 006481 278 HGFYSTKHNEDFA-ALEQHIEDLTQ 301 (643)
Q Consensus 278 ~~F~s~~~~~~fa-aLqqhIeDLT~ 301 (643)
.+|.-+.+....+ ...++|+.+..
T Consensus 39 ~~y~~~~d~~~~~~~~~~~l~~~~~ 63 (258)
T 2yfa_A 39 LQYMIANGDDTAAANTLAKLDAFSK 63 (258)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 5677777777787 88888887743
No 117
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=47.43 E-value=69 Score=31.28 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=4.5
Q ss_pred HHHHHHHHHHhh
Q 006481 412 QSEISSYKKKIS 423 (643)
Q Consensus 412 ~~E~~s~~~qls 423 (643)
+.++...+.++.
T Consensus 135 ~~~l~~~~~~l~ 146 (369)
T 4dk0_A 135 QENIKQAEIEVN 146 (369)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 118
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=47.22 E-value=3.1e+02 Score=29.76 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=16.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006481 328 TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 362 (643)
Q Consensus 328 t~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 362 (643)
....+.....|..|+..++..|.++......+...
T Consensus 113 sn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~ 147 (464)
T 1m1j_B 113 SDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEY 147 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 33333444455555555555555544443333333
No 119
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=46.59 E-value=1.3e+02 Score=25.40 Aligned_cols=14 Identities=7% Similarity=0.368 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHH
Q 006481 288 DFAALEQHIEDLTQ 301 (643)
Q Consensus 288 ~faaLqqhIeDLT~ 301 (643)
++..++.-|+.+..
T Consensus 13 ~v~~I~~~i~~i~~ 26 (127)
T 1ez3_A 13 QVEEIRGFIDKIAE 26 (127)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 120
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=46.36 E-value=14 Score=37.24 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=27.1
Q ss_pred HHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHH
Q 006481 406 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 448 (643)
Q Consensus 406 rele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqs 448 (643)
..+.++..++..+..|..-|..+...++..|..|++|-+.|++
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3355566666666666666666666666677777777665543
No 121
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=46.01 E-value=13 Score=29.33 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=20.2
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHH
Q 006481 317 SESLAAENSSLTDSYNQQRSVVNQLKSEMEK 347 (643)
Q Consensus 317 ~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~ 347 (643)
+|.|-.||+.|-.+|++....+.+|+..+++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566667777777776666666666666543
No 122
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.96 E-value=1.6e+02 Score=26.12 Aligned_cols=96 Identities=21% Similarity=0.304 Sum_probs=52.7
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHhhHHHHHHHHHHHHHHHHH-------
Q 006481 282 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE--NSSLTDSYNQQRSVVNQLKSEMEKLQEEI------- 352 (643)
Q Consensus 282 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~E--NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei------- 352 (643)
|+.++.||..|-+-|. .-=|.+-..+..=+.++.+|.+- +..|.++.......+++|=.+.-+.=.++
T Consensus 5 ~~~d~~ef~~l~~~is---~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~ 81 (130)
T 2dnx_A 5 SSGQLRDFSSIIQTCS---GNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPL 81 (130)
T ss_dssp CSCCSCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCChhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4556788877665554 34455556666666667676653 45566666665555555443332222221
Q ss_pred -----HHHHHHhhhhHHHHHHHhhhhhhHHHHH
Q 006481 353 -----KVQLVELESFRNEYANVRLECNAADERA 380 (643)
Q Consensus 353 -----~aQ~~~le~l~aErdaArle~~aA~ERa 380 (643)
+.|....+-|..|..++-.++..+..++
T Consensus 82 ~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~ 114 (130)
T 2dnx_A 82 STSEQRQQRLQKERLMNDFSAALNNFQAVQRRV 114 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2244455556666666666555554443
No 123
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=45.45 E-value=56 Score=30.74 Aligned_cols=9 Identities=22% Similarity=0.102 Sum_probs=4.3
Q ss_pred hhCCCCCcC
Q 006481 453 ASGSGKSID 461 (643)
Q Consensus 453 a~~~gk~~~ 461 (643)
++-.|.+..
T Consensus 135 AP~~G~V~~ 143 (277)
T 2f1m_A 135 SPISGRIGK 143 (277)
T ss_dssp CSSCEEECC
T ss_pred CCCCeEEEe
Confidence 355555433
No 124
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=45.16 E-value=1.1e+02 Score=27.48 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHhhh
Q 006481 299 LTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE---IKVQLVELESFRNEYANVRLE 372 (643)
Q Consensus 299 LT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E---i~aQ~~~le~l~aErdaArle 372 (643)
|.-||-+|.=.++-=....+.+.+.+..+.+.|.+....+..+|.....|+.+ ++.|+...+.|-.|+-|+-++
T Consensus 21 LDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI~E~~~~~~~ 97 (103)
T 4h22_A 21 LDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLEPKLAAALE 97 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC---------
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544444444444444444444444444444444444433333332 233555556666666554443
No 125
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=45.12 E-value=1.3e+02 Score=24.78 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006481 310 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 355 (643)
Q Consensus 310 L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ 355 (643)
.+.+.+=++++-......-.++-+....|..|++.|..|+.++..-
T Consensus 15 ~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ 60 (81)
T 1ic2_A 15 KENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444555555555555555544333
No 126
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=44.88 E-value=1.8e+02 Score=26.36 Aligned_cols=78 Identities=14% Similarity=0.250 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHH-hhhHHHH
Q 006481 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQL-ENSQSEI 415 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerel-e~l~~E~ 415 (643)
+++.|+-.+.-.++-+..-....+.++.|... ..++.|+ |-.|+.++.=.|.+ ++.||.. |.++.|+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q----~~~~lE~-------I~vLkaQv~IY~~D-F~aERadREkl~~eK 92 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ----HKIVMET-------VPVLKAQADIYKAD-FQAERHAREKLVEKK 92 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTH-------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-------HHHHHHHHHHHHHH-HccchhhHHHHHhHH
Confidence 46666666666666666655566666665554 2333344 44455555544433 3333333 2355556
Q ss_pred HHHHHHhhhHH
Q 006481 416 SSYKKKISSLE 426 (643)
Q Consensus 416 ~s~~~qlssle 426 (643)
..+..++..|.
T Consensus 93 e~L~~ql~~Lq 103 (110)
T 2v4h_A 93 EYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66655555543
No 127
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=44.33 E-value=3.4e+02 Score=29.43 Aligned_cols=28 Identities=4% Similarity=0.096 Sum_probs=12.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006481 326 SLTDSYNQQRSVVNQLKSEMEKLQEEIK 353 (643)
Q Consensus 326 aLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 353 (643)
+|...|++...++..+...|.++..+|+
T Consensus 125 ~Iq~slk~~Q~Qi~en~n~~~~~~~~~e 152 (464)
T 1m1j_B 125 MIDNKLVKTQKQRKDNDIILSEYNTEME 152 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHH
Confidence 3444454444444444444444444333
No 128
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=44.28 E-value=3e+02 Score=28.71 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=22.1
Q ss_pred hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHH
Q 006481 389 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 426 (643)
Q Consensus 389 ~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssle 426 (643)
.|-.|+..++-+.-+|+.+|+....+.+.++|++.+|.
T Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lk 246 (373)
T 3hhm_B 209 KLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIK 246 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34444444555555666666666666666666666653
No 129
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=43.75 E-value=2.3e+02 Score=27.22 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=38.9
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006481 318 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 397 (643)
Q Consensus 318 esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L 397 (643)
.++|.++..+-.+|..++..+.++=.++..|+.+...+. .+++.+..+.-.-+-=-..|-+.+...|+.|..+
T Consensus 75 ~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~-------q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l 147 (192)
T 2p22_C 75 RDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASW-------QDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQL 147 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666666555555555555543322 2332222221111112345666666777777766
Q ss_pred hhhh
Q 006481 398 RSNE 401 (643)
Q Consensus 398 RS~e 401 (643)
-.+=
T Consensus 148 ~~~F 151 (192)
T 2p22_C 148 ETTT 151 (192)
T ss_dssp HHSC
T ss_pred HHHH
Confidence 4433
No 130
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=43.32 E-value=55 Score=34.44 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=38.9
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCC
Q 006481 381 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGS 456 (643)
Q Consensus 381 k~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~~ 456 (643)
..|..|+..|.+++.++.-..-+++.+++.+..++...+..-. .+.+.+||-|--.+.-+|=++..
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr----------~l~n~~~~l~gnIrV~vRvRP~~ 71 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERK----------ELHNTVMDLRDNIRVFCRIRPPL 71 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHTCSEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhCCCEEEEEEcCCCC
Confidence 4566777777777777766666666666666655544443333 24456666665555555555543
No 131
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=42.94 E-value=97 Score=26.54 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=19.9
Q ss_pred HHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHH
Q 006481 384 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK 421 (643)
Q Consensus 384 AaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~q 421 (643)
-+|+-.|=.++..+-.+--+++-|+.++..++..++.|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555555555555555555555555544
No 132
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=42.92 E-value=58 Score=26.02 Aligned_cols=36 Identities=14% Similarity=0.322 Sum_probs=20.6
Q ss_pred HHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 006481 416 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 451 (643)
Q Consensus 416 ~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLR 451 (643)
..+..++..|+++...|...|..|+.|...|..-|+
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555666666666666666655443
No 133
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=42.75 E-value=92 Score=35.39 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006481 287 EDFAALEQHIEDLTQEKFALQRSLEASRA 315 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~ 315 (643)
+|.-.+.+||+++.+||..|-+.|+..+.
T Consensus 10 ~dl~~i~~~i~~~~~~r~~l~~~~~~~~~ 38 (706)
T 3fhn_A 10 DDLLNINDRIKQVQNERNELASKLQNLKQ 38 (706)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46667899999999999999999988875
No 134
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=42.72 E-value=3.8e+02 Score=29.50 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=25.8
Q ss_pred HHHHHHHHHHH--HHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 006481 376 ADERAKILASE--VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 440 (643)
Q Consensus 376 A~ERak~LAaE--VV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ 440 (643)
+-||+|.-|+| .-.||++..++ +-.++.+-.....-+..++.| ++.||..++-..+.+-
T Consensus 490 ~~~~~~~e~~~~~~~~l~~~~~~~---~~~~~~~~~~~~e~~~ql~~k---me~~~~~~~~e~~~~~ 550 (592)
T 1f5n_A 490 EVERVKAESAQASAKMLHEMQRKN---EQMMEQKERSYQEHLKQLTEK---MENDRVQLLKEQERTL 550 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 44566665553 33344433222 223333322333333333333 4567766655544433
No 135
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=42.34 E-value=66 Score=24.92 Aligned_cols=38 Identities=29% Similarity=0.232 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q 006481 538 ALISELALEKEELVQALSSELAQSSKLKDLNNELSRKL 575 (643)
Q Consensus 538 aLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKL 575 (643)
+-++||+....++-........+++-|+.+|.=|++.|
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 45778888777777777777788888888888777765
No 136
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=41.80 E-value=22 Score=28.05 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=14.5
Q ss_pred HHHHhhhHHHhhhhhHHHHHHHHHHHHHHHH
Q 006481 418 YKKKISSLEKERQDFQSTIEALQEEKKMMQS 448 (643)
Q Consensus 418 ~~~qlsslekeR~~l~s~i~aLQEEKklLqs 448 (643)
++.++..|+.+...|...|..|++|...|..
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555544443
No 137
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=40.68 E-value=69 Score=31.40 Aligned_cols=50 Identities=12% Similarity=0.170 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 006481 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 386 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE 386 (643)
.+..|+.+++.|+.+++...-.+--+.+|++|.|-+...=.+.++..|.+
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e 109 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQ 109 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655556666778888777666666666655554
No 138
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=40.64 E-value=1.9e+02 Score=31.30 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHhHHHHHHH
Q 006481 375 AADERAKILASEVIGLEEKALR 396 (643)
Q Consensus 375 aA~ERak~LAaEVV~LEEk~l~ 396 (643)
+..++++.|..++-.||+++.+
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~ 141 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQ 141 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544443
No 139
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=40.46 E-value=35 Score=27.22 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=18.4
Q ss_pred HHHHHhhhhhhhHHHHhhhHHHHHHH
Q 006481 393 KALRLRSNELKLERQLENSQSEISSY 418 (643)
Q Consensus 393 k~l~LRS~eLKlerele~l~~E~~s~ 418 (643)
+.+..++.-||.|||||.++..+.-.
T Consensus 9 qEi~Aqe~iLr~ErELEeAr~~La~i 34 (50)
T 2qdq_A 9 QIIAAQEEMLRKERELEEARKKLAQI 34 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788899999998887554333
No 140
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=39.81 E-value=51 Score=28.73 Aligned_cols=40 Identities=13% Similarity=0.216 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 006481 336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA 375 (643)
Q Consensus 336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~a 375 (643)
.+...|..++..|+.++..-..+++.+.-|+|+.+..|.+
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666667777766667777777788877776653
No 141
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=39.66 E-value=1e+02 Score=25.55 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 006481 336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 370 (643)
Q Consensus 336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaAr 370 (643)
..|.+.|.+|..|+.|...-...++.+..|||=+=
T Consensus 2 ~~m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf 36 (75)
T 3mtu_A 2 ASMDAIKKKMQMLKLDKENALDRAEQAEADKDFYF 36 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 46788888887777776666666666666666443
No 142
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=39.49 E-value=1.1e+02 Score=26.16 Aligned_cols=66 Identities=24% Similarity=0.212 Sum_probs=34.3
Q ss_pred HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 006481 316 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 395 (643)
Q Consensus 316 l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l 395 (643)
=+|.|-.||..|-+.-|+.--+-+.|=..+ +.+..|+...+.++.+-.+-...+..-|..||+.+.
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rv--------------dELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKV--------------DELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888999999888887555444444444 444455555555554444444445555555555443
No 143
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=39.41 E-value=65 Score=33.63 Aligned_cols=56 Identities=14% Similarity=0.302 Sum_probs=43.4
Q ss_pred hHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 006481 404 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 459 (643)
Q Consensus 404 lerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~~gk~ 459 (643)
++.+++.+..++...++.+..++++...+...+...+.++|.|+-.|..+-++=++
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV 63 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRV 63 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 35666777777777788888888887788777777778889999999888776555
No 144
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=39.35 E-value=2.7e+02 Score=27.04 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=15.6
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006481 317 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 351 (643)
Q Consensus 317 ~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 351 (643)
+..|..+|..|.+.||+-..++.++-..-++++.+
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~ 175 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFEKAVSAKEALETD 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445544444444444444444444433
No 145
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=39.34 E-value=58 Score=27.03 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=14.3
Q ss_pred HHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006481 420 KKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 420 ~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
+|+.++..+.-.+...++.|+.|+----.|||.+
T Consensus 9 kkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdi 42 (75)
T 3mtu_A 9 KKMQMLKLDKENALDRAEQAEADKDFYFGKLRNI 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333444444444444444444444444444443
No 146
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=39.27 E-value=74 Score=27.39 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHH
Q 006481 374 NAADERAKILASEVIGLEEKALRL 397 (643)
Q Consensus 374 ~aA~ERak~LAaEVV~LEEk~l~L 397 (643)
..+..|...++.+|..||..-.+|
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~L 55 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERL 55 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555444444
No 147
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=38.23 E-value=5.5e+02 Score=30.11 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=16.5
Q ss_pred ccCCCccccccCCCccccccccccccCCchhhHHHHHHHHH
Q 006481 257 STSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIE 297 (643)
Q Consensus 257 ~~~n~v~~~~~~~dE~~~e~~~~F~s~~~~~~faaLqqhIe 297 (643)
+..|+.-| ++.|=.++| +-|+.==.+||+-|+
T Consensus 628 F~~N~lvi--tsVDvqsvE-------pvDqrtrd~LqkSVq 659 (861)
T 2zuo_A 628 FPQNGLVV--SSVDVQSVE-------PVDQRTRDALQRSVQ 659 (861)
T ss_dssp CTTTCEEE--EEEEEEEEE-------ESSHHHHHHHHHHHH
T ss_pred EccCCeEE--EEEeeeeec-------ccCHHHHHHHHHHHH
Confidence 33444433 555555554 334445566776554
No 148
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=37.59 E-value=14 Score=32.84 Aligned_cols=15 Identities=47% Similarity=0.864 Sum_probs=12.3
Q ss_pred HHHHHHhcCCCCCCc
Q 006481 623 LGWIMKLFPGGPSRR 637 (643)
Q Consensus 623 lgwimklfpgg~s~r 637 (643)
+.+|++|||+||.|.
T Consensus 77 ~k~Ly~LFP~gPakq 91 (105)
T 3or1_C 77 LKEIYELFPSGPGKG 91 (105)
T ss_dssp HHHHHHHCTTCTTTT
T ss_pred HHHHHHHCCCCHHHH
Confidence 368999999999653
No 149
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=37.48 E-value=2.2e+02 Score=25.27 Aligned_cols=66 Identities=12% Similarity=0.280 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006481 292 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQLV 357 (643)
Q Consensus 292 LqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt-~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~ 357 (643)
|++..+++|.---.|--+-++-+.-.++.......+- .-|-++.++|++|+.++.+|++.++....
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666667776666666666666665566555555553 34777889999999999999987655443
No 150
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=36.82 E-value=1.9e+02 Score=24.23 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006481 323 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 362 (643)
Q Consensus 323 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 362 (643)
+-..+..+|++....+..|...+.+|+.++.-...+++.|
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666888888888888888888887766665555544
No 151
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=35.71 E-value=9.4 Score=34.14 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 006481 374 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 425 (643)
Q Consensus 374 ~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssl 425 (643)
-|+.-|.|.++ ++..||..+..|..+--+|..|...+..|+..++.+.++|
T Consensus 48 yAq~CR~rk~~-~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L 98 (107)
T 3a5t_A 48 YAASCRVKRVT-QKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEAL 98 (107)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC---
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888887 8999998888776666666666666777766666666654
No 152
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=34.21 E-value=2.6e+02 Score=25.19 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=27.3
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006481 318 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 360 (643)
Q Consensus 318 esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le 360 (643)
+.=..+.+.|++++..--..+..|+....++++++.-|+..|.
T Consensus 41 E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt 83 (112)
T 1x79_B 41 EDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLM 83 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666677777666666666665553
No 153
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.79 E-value=2.4e+02 Score=29.86 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHH
Q 006481 374 NAADERAKILASEVIGLEEKALRL 397 (643)
Q Consensus 374 ~aA~ERak~LAaEVV~LEEk~l~L 397 (643)
.+..++++.|..++-.||+++..+
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~ 95 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEEL 95 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555443
No 154
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=33.29 E-value=2.1e+02 Score=23.69 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHhhHHHHHHHHHH
Q 006481 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE---NSSLTDSYNQQRSVVNQLKSEM 345 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~E---NsaLt~~yNqQ~~~v~qLk~~m 345 (643)
=+|..|++++.+|..-.-.|+-.|+.-+..++.|... --.-...|.+.-..-.+=-.+|
T Consensus 11 v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l 72 (103)
T 4i0x_B 11 FDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAAREL 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999887 4445555655444443333333
No 155
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=33.20 E-value=2.7e+02 Score=25.11 Aligned_cols=68 Identities=12% Similarity=0.302 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006481 289 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQL 356 (643)
Q Consensus 289 faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt-~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~ 356 (643)
-+.|++..+++|.---.|--+-+|-++-.++...+...+- .-|-++.++|++|+.++.+|++.++...
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888887777777777776666666666665554 3467788999999999999998765443
No 156
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=32.83 E-value=3.2e+02 Score=25.84 Aligned_cols=59 Identities=24% Similarity=0.156 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 006481 291 ALEQHIEDLTQEKFALQRSL-------EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 349 (643)
Q Consensus 291 aLqqhIeDLT~EKfaLqR~L-------~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq 349 (643)
++-+.|..|+.|.-.|.+-+ ..-.++.+.|-+|..+|.=.||.....+..|+.+=.+|=
T Consensus 65 ~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 65 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666655544 444577888888888888888888877777777654443
No 157
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=32.63 E-value=79 Score=28.76 Aligned_cols=60 Identities=13% Similarity=0.234 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006481 286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 351 (643)
Q Consensus 286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 351 (643)
.++|.+|++.++..+.++-....+++.+++..+ | .||.......++| ..+...+..|+.+
T Consensus 9 ~~g~~~L~~el~~~~~~r~~~~~~i~~A~~~GD-l-sEnaey~aak~~q----~~~e~ri~~L~~~ 68 (156)
T 2f23_A 9 KAGYERLMQQLERERERLQEATKILQELMESSD-D-YDDSGLEAAKQEK----ARIEARIDSLEDI 68 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC-C-SCSHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-hhhhhHHHHHHHH----HHHHHHHHHHHHH
Confidence 578999999999977777777777776665411 0 2565544444443 3344455455444
No 158
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.45 E-value=1.4e+02 Score=26.51 Aligned_cols=87 Identities=20% Similarity=0.247 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHH-HHHHH
Q 006481 342 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI-SSYKK 420 (643)
Q Consensus 342 k~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~-~s~~~ 420 (643)
...++.++.+|..-...++.+..|+...+. .-+.||++...+|- ..-+++.||+.|-.-+ +...+
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~e~~~L~~--~l~eE~~~R~~aE~------------~~~~ie~ElEeLTasLFeEAN~ 69 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDDEVKRLRE--DIAKENELRTKAEE------------EADKLNKEVEDLTASLFDEANN 69 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555444222 22334444443331 1123344444443221 33455
Q ss_pred HhhhHHHhhhhhHHHHHHHHHH
Q 006481 421 KISSLEKERQDFQSTIEALQEE 442 (643)
Q Consensus 421 qlsslekeR~~l~s~i~aLQEE 442 (643)
-|..+.++|..+.--++.|+++
T Consensus 70 MVa~ar~e~~~~e~kn~~L~~q 91 (97)
T 2eqb_B 70 MVADARKEKYAIEILNKRLTEQ 91 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666555555544
No 159
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=31.97 E-value=2.8e+02 Score=26.45 Aligned_cols=44 Identities=20% Similarity=0.140 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH
Q 006481 338 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 381 (643)
Q Consensus 338 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak 381 (643)
|.+|+..+..++.-|.+|....+.+..||..|--++..|++=.+
T Consensus 22 l~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye 65 (158)
T 3tul_A 22 LSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYE 65 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999988777666665443
No 160
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.87 E-value=59 Score=25.56 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=10.3
Q ss_pred HHHHHhhHHHHHHHHHhhhHHHHH
Q 006481 562 SKLKDLNNELSRKLEHQTQRLELL 585 (643)
Q Consensus 562 s~Lk~lN~ELsrKLE~qTQRLELl 585 (643)
..|+.+|.||..|.+.-+++++-+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 161
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=31.77 E-value=2.1e+02 Score=31.83 Aligned_cols=134 Identities=23% Similarity=0.355 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh--------------
Q 006481 294 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL-------------- 359 (643)
Q Consensus 294 qhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l-------------- 359 (643)
+.+-=+..+|--+.|-++.|++-+=+|-.=|..||..-|.-.+.-.+|+.++.=+..-|+--+-.-
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (676)
T 3qa8_A 433 QIWQTIRALKEDCARLLQGQRTSMVNLLRYNTELSKKKNSMTSECEQLKAKLDFFRSSIQIDLEKYSEQMEFGITSEKLL 512 (676)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHTTTTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCSHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCchHHHH
Confidence 455567889999999999999999999999999999999999999999998876665544332211
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHH
Q 006481 360 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 439 (643)
Q Consensus 360 e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aL 439 (643)
.+-++=-.+| ..|. .+.||-.|+++++.|-.+-+.|+|. =..+ |++ .++|.|
T Consensus 513 ~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~-~~~--~~~~~~ 564 (676)
T 3qa8_A 513 SAWREMEQAV-ELCG--------REREVQALVDKMMALQTDSVDLQRN----------------PLGR-KHR--GTLDDL 564 (676)
T ss_dssp HHHHHHHHHH-TTCC--------CCTTHHHHHHHHHTHHHHTTTTTTC----------------C----------CHHHH
T ss_pred HHHHHHHHHH-HHhh--------HHHHHHHHHHHHHhhhhhhhhhccC----------------chhc-ccc--cHHHHH
Confidence 1111100111 2332 3458888888888776665554443 1111 332 477777
Q ss_pred HHHHHHHHHHHHhhhC
Q 006481 440 QEEKKMMQSKLRKASG 455 (643)
Q Consensus 440 QEEKklLqskLRka~~ 455 (643)
.+.-..|..+||.++.
T Consensus 565 ~~~~~~~~~~~~~~~~ 580 (676)
T 3qa8_A 565 EEQARDLYRRLRERPR 580 (676)
T ss_dssp HHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHhccCc
Confidence 7777889999998754
No 162
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=31.34 E-value=1.1e+02 Score=25.92 Aligned_cols=15 Identities=20% Similarity=0.505 Sum_probs=6.7
Q ss_pred HHHHhhhHHHHHHHH
Q 006481 405 ERQLENSQSEISSYK 419 (643)
Q Consensus 405 erele~l~~E~~s~~ 419 (643)
+.+++.|..|+..++
T Consensus 56 ~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 56 QKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 163
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=31.25 E-value=2.4e+02 Score=29.50 Aligned_cols=12 Identities=0% Similarity=-0.247 Sum_probs=4.7
Q ss_pred HHHHhhHHHHHH
Q 006481 530 MRMIHNINALIS 541 (643)
Q Consensus 530 lRmI~nInaLis 541 (643)
.++...|-..+-
T Consensus 166 a~l~~aL~~~~~ 177 (421)
T 1ses_A 166 ALYELALLRFAM 177 (421)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444433333
No 164
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=31.02 E-value=1.5e+02 Score=26.20 Aligned_cols=35 Identities=37% Similarity=0.451 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006481 292 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSS 326 (643)
Q Consensus 292 LqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsa 326 (643)
.|++|+.|-.+...|++.|+.+....+.|..+|..
T Consensus 16 ~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~ 50 (125)
T 1joc_A 16 GEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQS 50 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 34566666666666666666655555555555443
No 165
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=29.87 E-value=1.8e+02 Score=25.10 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=13.5
Q ss_pred HHHhhhHHHhhhhhHHHHHHHHHHHHHH
Q 006481 419 KKKISSLEKERQDFQSTIEALQEEKKMM 446 (643)
Q Consensus 419 ~~qlsslekeR~~l~s~i~aLQEEKklL 446 (643)
.+++..+++.-++|+.-|..|+++-+.|
T Consensus 44 eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 44 ASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555544443
No 166
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=29.67 E-value=1.2e+02 Score=27.94 Aligned_cols=60 Identities=17% Similarity=0.362 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006481 286 NEDFAALEQHIEDL-TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 351 (643)
Q Consensus 286 ~~~faaLqqhIeDL-T~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 351 (643)
.+.+.+|++.++.| +.++-.+..+++.+++.-+- .||. .|-+.+.....+...+..|+.+
T Consensus 8 ~~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDl--sENa----eY~aak~~q~~~e~rI~~L~~~ 68 (158)
T 2p4v_A 8 REGYEKLKQELNYLWREERPEVTKKVTWAASLGDR--SENA----DYQYNKKRLREIDRRVRYLTKC 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCT--TTCH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCc--ccch----hHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999 66888888888776654221 2553 2333444445555555555443
No 167
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=29.62 E-value=23 Score=29.15 Aligned_cols=60 Identities=17% Similarity=0.320 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006481 286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 352 (643)
Q Consensus 286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 352 (643)
++-|..|..+|-.+...|.+=---|..+.+-...|-.++..|.. .+.+|+.+.+.|++.+
T Consensus 18 n~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~-------e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 18 KDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ-------DIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34566666666554444544445556666666666666665533 3445555555554443
No 168
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=29.31 E-value=1.2e+02 Score=27.80 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHH
Q 006481 338 VNQLKSEMEKLQE 350 (643)
Q Consensus 338 v~qLk~~mE~Lq~ 350 (643)
...|+.+++.|..
T Consensus 11 ~~~L~~EL~~L~~ 23 (158)
T 2p4v_A 11 YEKLKQELNYLWR 23 (158)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4567777777744
No 169
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=29.00 E-value=2.5e+02 Score=24.52 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHH
Q 006481 347 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE 414 (643)
Q Consensus 347 ~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E 414 (643)
.|+++|.--.+-+-+|+.|..-|+-+++-| |+..=+-.+.+.|.+-..|.+++--+-.|
T Consensus 26 ~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpa---------eIA~~~~~L~qAraDL~~l~r~~av~g~E 84 (90)
T 4b6x_A 26 ALRQEIEDKQLMVNNLTDELQDAIDEANPA---------EIANTSQQLRHARADLADLQRRFAVLRNE 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHH---------HHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 567777777777888888888888887754 55555555555555555555554444333
No 170
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.86 E-value=1.3e+02 Score=24.90 Aligned_cols=14 Identities=21% Similarity=0.441 Sum_probs=7.4
Q ss_pred HHHHhHHHHHHHHh
Q 006481 385 SEVIGLEEKALRLR 398 (643)
Q Consensus 385 aEVV~LEEk~l~LR 398 (643)
.-|-.||.++..|.
T Consensus 29 ~~i~~LE~~v~~le 42 (70)
T 1gd2_E 29 DHLKALETQVVTLK 42 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555666655443
No 171
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=28.57 E-value=1.2e+02 Score=25.77 Aligned_cols=60 Identities=17% Similarity=0.320 Sum_probs=32.9
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHH--------HhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHH
Q 006481 363 RNEYANVRLECNAADERAKILASEV--------IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 426 (643)
Q Consensus 363 ~aErdaArle~~aA~ERak~LAaEV--------V~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssle 426 (643)
+.+......+..++..|+..+|.|. +.|-++--+|. +-++.|..+....+..++.+..|+
T Consensus 15 ~~~~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~----rie~~ld~I~~dl~~Aek~L~~L~ 82 (83)
T 1l4a_C 15 QQQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLD----RIEEGLDQINQDMKDAEKNLEGME 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHSGGGCTTC--
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344444455566677777777663 33444443332 346666667777666666666554
No 172
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=28.45 E-value=39 Score=28.55 Aligned_cols=63 Identities=30% Similarity=0.334 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 006481 286 NEDFAALEQHIEDLT-QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 348 (643)
Q Consensus 286 ~~~faaLqqhIeDLT-~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L 348 (643)
++-|..|..+|=.+. .+|.+=---|.++.+-...|-.++..+....++......+|+..+++|
T Consensus 22 n~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 22 KRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777666553 345555556677777777777777777766555555555555555444
No 173
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=28.45 E-value=2.7e+02 Score=24.56 Aligned_cols=15 Identities=7% Similarity=0.175 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhhhh
Q 006481 348 LQEEIKVQLVELESF 362 (643)
Q Consensus 348 Lq~Ei~aQ~~~le~l 362 (643)
++.++.+-+.+.+.+
T Consensus 52 Y~~DF~aERadREkl 66 (94)
T 3jsv_C 52 YKADFQAERHAREKL 66 (94)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 174
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=28.43 E-value=3.2e+02 Score=24.58 Aligned_cols=49 Identities=27% Similarity=0.393 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006481 297 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 352 (643)
Q Consensus 297 eDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 352 (643)
.+|-+|=+.|.+-+++. ..||--|-..-..-+..|.+|..+|++|..|-
T Consensus 33 qELIqEYl~LE~~~s~l-------e~e~~rlr~~~~~~~~~v~eLe~everL~~EN 81 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRM-------EDENNRLRLESKRLDARVRELELELDRLRAEN 81 (104)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 35566667777776664 34444443333344778889999998888863
No 175
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=28.37 E-value=5.2e+02 Score=26.86 Aligned_cols=33 Identities=18% Similarity=0.432 Sum_probs=22.2
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006481 325 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 357 (643)
Q Consensus 325 saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~ 357 (643)
..|+.+|-...+.|.+++.-.++|++++++|..
T Consensus 201 ~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~ 233 (373)
T 3hhm_B 201 QRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAA 233 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777777777776655543
No 176
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=28.26 E-value=1e+02 Score=26.29 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=30.6
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh
Q 006481 371 LECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS 424 (643)
Q Consensus 371 le~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlss 424 (643)
.+|..+..|-+.+-.+=-.||+++..+ +.+|+..+.+.++.+..+..
T Consensus 6 ~e~e~~~~klq~~E~rN~~Le~~v~~l-------e~~Le~s~~~q~~~~~Elk~ 52 (79)
T 3cvf_A 6 AEREETQQKVQDLETRNAELEHQLRAM-------ERSLEEARAERERARAEVGR 52 (79)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 357778888888888888888887755 66666666666665555553
No 177
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.06 E-value=3.1e+02 Score=24.19 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=9.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 006481 333 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 365 (643)
Q Consensus 333 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE 365 (643)
..+..+...|.++-.|++.|+.-..++++++.-
T Consensus 28 ~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~ 60 (131)
T 3tnu_A 28 TNSELVQSGKSEISELRRTMQNLEIELQSQLSM 60 (131)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444455555555555544444444444433
No 178
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=27.93 E-value=1.2e+02 Score=28.68 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=0.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHH
Q 006481 425 LEKERQDFQSTIEALQEEKKMMQS 448 (643)
Q Consensus 425 lekeR~~l~s~i~aLQEEKklLqs 448 (643)
.+.-|+.|.--++|.++-||-+-.
T Consensus 113 seASRqgLrRDLeASReAKKqlEa 136 (146)
T 2xnx_M 113 SDASRQSLRRDLDASREAKKQVEK 136 (146)
T ss_dssp C-----------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888876544
No 179
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=27.64 E-value=2.4e+02 Score=22.69 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006481 337 VVNQLKSEMEKLQEEIKVQLVELESFRN 364 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a 364 (643)
.|.++..+.+.|+.+|.++...++.+..
T Consensus 37 ~v~~~l~~h~~l~~ei~~~~~~v~~v~~ 64 (118)
T 3uul_A 37 DVKEQFATHETFMMELSAHQSSVGSVLQ 64 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666666666655543
No 180
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=27.58 E-value=1.4e+02 Score=24.68 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=22.4
Q ss_pred HHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006481 419 KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 419 ~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
++.+-+-|..=|.|....+.|.+|-++||++|.+.
T Consensus 19 K~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~L 53 (63)
T 2w6a_A 19 KKALATSEAKVQQLMKVNSSLSDELRKLQREIHKL 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Confidence 34444445555566667777777777777777654
No 181
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=27.25 E-value=3.6e+02 Score=24.54 Aligned_cols=23 Identities=30% Similarity=0.209 Sum_probs=11.1
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHH
Q 006481 365 EYANVRLECNAADERAKILASEV 387 (643)
Q Consensus 365 ErdaArle~~aA~ERak~LAaEV 387 (643)
|.+....+-..|....+.||..+
T Consensus 25 E~qry~~eka~AE~A~~~La~~~ 47 (119)
T 3etw_A 25 EEARFNEERAQADAARQALAQNE 47 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555565553
No 182
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=26.50 E-value=1e+02 Score=27.43 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=12.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006481 325 SSLTDSYNQQRSVVNQLKSEMEKLQEE 351 (643)
Q Consensus 325 saLt~~yNqQ~~~v~qLk~~mE~Lq~E 351 (643)
+.|.++..+.-..+.+|++++++|+.+
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 183
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.41 E-value=2.6e+02 Score=29.71 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhC
Q 006481 432 FQSTIEALQEEKKMMQSKLRKASG 455 (643)
Q Consensus 432 l~s~i~aLQEEKklLqskLRka~~ 455 (643)
|..-|.+|.++-+.+..+|.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 81 IVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666665544
No 184
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.37 E-value=3.3e+02 Score=23.92 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=15.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 006481 330 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 367 (643)
Q Consensus 330 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErd 367 (643)
.....+..+..-|.++-.|++.|+.-..++++++.-++
T Consensus 23 ~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~ 60 (129)
T 3tnu_B 23 TAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCA 60 (129)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444555555666666666665555555555544433
No 185
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=26.22 E-value=86 Score=31.72 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHH----HHHHHHHHHHHHHHH
Q 006481 384 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQST----IEALQEEKKMMQSKL 450 (643)
Q Consensus 384 AaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~----i~aLQEEKklLqskL 450 (643)
..+...+++++.++ ...+ +.+++++..+++.++.++..+++++..+... +++||+..+..+.+|
T Consensus 166 ~~~~~e~~~~~~~~--~n~~-~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk~~~~~~~~L 233 (315)
T 2ve7_A 166 DEMNAELQSKLKDL--FNVD-AFKLESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSADLYKDRL 233 (315)
T ss_dssp HHHHHHHHHHHHHH--HTCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHc
No 186
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=26.14 E-value=26 Score=32.20 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=30.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006481 285 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY 331 (643)
Q Consensus 285 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~y 331 (643)
..|||...-+|+.+||.|-+. ++++++|+..++.--.+.++|
T Consensus 3 r~ddf~~r~~hl~~l~d~el~-----~rar~LA~kIv~pv~el~~~h 44 (121)
T 3kp1_E 3 RADDFQQRRAHLANLSDEELQ-----TRFWEMAEKIVDPLLDLGKKN 44 (121)
T ss_dssp ---CHHHHTGGGTTCCHHHHH-----HHHHHHHHHHHHHHHHHHHHE
T ss_pred chhHHHHHHHHHHhCCHHHHH-----HHHHHHHHHHHHHHHHHHHcC
Confidence 568999999999999999764 567777777777666666554
No 187
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=26.12 E-value=3.2e+02 Score=24.76 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 006481 288 DFAALEQHIEDLTQEKFAL 306 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaL 306 (643)
++..+...|+.+...=-.|
T Consensus 44 ~v~~I~~~i~~i~~~v~~l 62 (180)
T 1s94_A 44 QVEEIRAMIDKISDNVDAV 62 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555554433333
No 188
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=26.10 E-value=3e+02 Score=24.73 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=12.5
Q ss_pred HHHHHhHHHHHHHHhhhhhhhHH
Q 006481 384 ASEVIGLEEKALRLRSNELKLER 406 (643)
Q Consensus 384 AaEVV~LEEk~l~LRS~eLKler 406 (643)
.+-|..||.++.+||-+-.+|.+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666554444333
No 189
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=25.82 E-value=3.5e+02 Score=24.02 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 006481 376 ADERAKILASEVIGLEEKALRL 397 (643)
Q Consensus 376 A~ERak~LAaEVV~LEEk~l~L 397 (643)
..++...|......|++++.+|
T Consensus 79 ~~~~~~~L~~~~~~l~~~i~~L 100 (142)
T 3gp4_A 79 LEARAELLKKQRIELKNRIDVM 100 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555443
No 190
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.74 E-value=1.1e+02 Score=31.51 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=7.2
Q ss_pred HHHHHHHHhHHHHHHH
Q 006481 381 KILASEVIGLEEKALR 396 (643)
Q Consensus 381 k~LAaEVV~LEEk~l~ 396 (643)
+.|-.|++.||..++.
T Consensus 8 ~~~~~~~~~~e~~i~~ 23 (323)
T 1lwu_C 8 QKILEEVRILEQIGVS 23 (323)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3444445555444443
No 191
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=25.71 E-value=1.9e+02 Score=26.33 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHH
Q 006481 338 VNQLKSEMEKLQE 350 (643)
Q Consensus 338 v~qLk~~mE~Lq~ 350 (643)
...|+.++++|+.
T Consensus 11 ~~~L~~El~~L~~ 23 (158)
T 1grj_A 11 AEKLREELDFLKS 23 (158)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4567777777765
No 192
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=25.63 E-value=1e+02 Score=22.85 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006481 290 AALEQHIEDLTQEKFALQRSLEASRALS 317 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~ 317 (643)
.-||.-||+|+.+|..|+-.+++-++|.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4588899999999999988888877664
No 193
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=25.32 E-value=7e+02 Score=27.31 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhh
Q 006481 310 LEASRALSESLAAEN 324 (643)
Q Consensus 310 L~~s~~l~esLa~EN 324 (643)
++.-..+++.|..++
T Consensus 427 v~~l~~~~~~L~~~~ 441 (863)
T 1sjj_A 427 VEQIAAIAQELNELD 441 (863)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCC
Confidence 334444444444433
No 194
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.19 E-value=3.1e+02 Score=29.70 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhC
Q 006481 432 FQSTIEALQEEKKMMQSKLRKASG 455 (643)
Q Consensus 432 l~s~i~aLQEEKklLqskLRka~~ 455 (643)
|..-|.+|.++-+.++.+|.....
T Consensus 83 l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 83 LSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555666666655544
No 195
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=24.95 E-value=1.4e+02 Score=32.26 Aligned_cols=69 Identities=4% Similarity=0.149 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006481 290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 362 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 362 (643)
..|++.+++|-.++=.+.+.+.+..+-- .+-++|...-.+-+..+.+|+.++..+++++...++.+=++
T Consensus 43 r~~~~~~~~l~~~rn~~sk~i~~~k~~~----~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 111 (485)
T 3qne_A 43 VKLRFDLDEHNKKLNSVQKEIGKRFKAK----EDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNI 111 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444555555555555544443322110 12345666666667777777777777777777666665555
No 196
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=24.90 E-value=2.1e+02 Score=29.87 Aligned_cols=24 Identities=29% Similarity=0.363 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHH
Q 006481 374 NAADERAKILASEVIGLEEKALRL 397 (643)
Q Consensus 374 ~aA~ERak~LAaEVV~LEEk~l~L 397 (643)
.+..++++.|..++-.||+++.++
T Consensus 71 ~~l~~~~~~~~~~~~~~~~~~~~~ 94 (425)
T 2dq3_A 71 TEIQNRVKELKEEIDRLEEELRKV 94 (425)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666665544
No 197
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=24.85 E-value=1.2e+02 Score=22.18 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006481 337 VVNQLKSEMEKLQEEIKV 354 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~a 354 (643)
.+.+||.++.-|..||.+
T Consensus 3 eiaalkqeiaalkkeiaa 20 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAA 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 455566555555555444
No 198
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.79 E-value=1.9e+02 Score=22.82 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=9.4
Q ss_pred HhhhhhHHHHHHHHHHHHHH
Q 006481 427 KERQDFQSTIEALQEEKKMM 446 (643)
Q Consensus 427 keR~~l~s~i~aLQEEKklL 446 (643)
+|-|+|..+|-.|++|-..|
T Consensus 24 rdeqnlekiianlrdeiarl 43 (52)
T 3he5_B 24 RDEQNLEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHH
Confidence 33444444555555554443
No 199
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=24.78 E-value=4e+02 Score=28.82 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHhhhHHHhhhhhH
Q 006481 410 NSQSEISSYKKKISSLEKERQDFQ 433 (643)
Q Consensus 410 ~l~~E~~s~~~qlsslekeR~~l~ 433 (643)
.++.++..++.++..++.++..+.
T Consensus 115 ~l~~~i~~le~~~~~~~~~~~~~l 138 (484)
T 3lss_A 115 DLSDQVAGLAKEAQQLEEERDKLM 138 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555544433
No 200
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=24.76 E-value=2.4e+02 Score=24.10 Aligned_cols=47 Identities=17% Similarity=0.400 Sum_probs=34.3
Q ss_pred HHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 006481 405 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 451 (643)
Q Consensus 405 erele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLR 451 (643)
+-.+...++|+.++++==..|.+=.+.|...|..|+.|+..|+.-+.
T Consensus 17 ~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~ 63 (78)
T 3iv1_A 17 KEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIE 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788888777777777777888888888888877766543
No 201
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.62 E-value=1.7e+02 Score=31.61 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=18.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006481 326 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 362 (643)
Q Consensus 326 aLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 362 (643)
+|...-.+-+..+.+|+.++..+++++..-++.+=++
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~ 156 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQ 156 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4444444444555555555555555555555444444
No 202
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=24.56 E-value=2.1e+02 Score=29.96 Aligned_cols=14 Identities=50% Similarity=0.574 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhHHH
Q 006481 379 RAKILASEVIGLEE 392 (643)
Q Consensus 379 Rak~LAaEVV~LEE 392 (643)
+++.|..++-.||+
T Consensus 72 ~~~~~~~~~~~~~~ 85 (421)
T 1ses_A 72 RGKALGEEAKRLEE 85 (421)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 203
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.47 E-value=4.5e+02 Score=24.77 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=16.8
Q ss_pred HHHHhhhHHHhhhhhHHHHHHHHHH
Q 006481 418 YKKKISSLEKERQDFQSTIEALQEE 442 (643)
Q Consensus 418 ~~~qlsslekeR~~l~s~i~aLQEE 442 (643)
..+-|..+.++|..+.--++-|++.
T Consensus 99 AN~MVa~ar~~~~~~e~r~~~L~~q 123 (154)
T 2ocy_A 99 ANNMVADARKEKYAIEILNKRLTEQ 123 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777777777666666643
No 204
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=24.33 E-value=1.8e+02 Score=22.79 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHH
Q 006481 378 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 417 (643)
Q Consensus 378 ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s 417 (643)
|-.-+||+.||.|..++-+--.+.+.|+++|+.+-.--+.
T Consensus 4 etcmslasqvvkltkql~eqt~~rv~lq~qlq~lle~~k~ 43 (48)
T 2kes_A 4 ETCMSLASQVVKLTKQLKEQTVERVTLQNQLQQFLEAQKS 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
No 205
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=23.52 E-value=32 Score=35.50 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=3.6
Q ss_pred HHHhHHHHHHHH
Q 006481 386 EVIGLEEKALRL 397 (643)
Q Consensus 386 EVV~LEEk~l~L 397 (643)
||..||++++.+
T Consensus 5 ~~~~lE~~Il~~ 16 (319)
T 1fzc_C 5 EIMKYEASILTH 16 (319)
T ss_dssp -----CTTTTTH
T ss_pred HHHHHHHHhhCh
Confidence 455555555544
No 206
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=23.51 E-value=5.1e+02 Score=25.08 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=41.6
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHH
Q 006481 317 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 396 (643)
Q Consensus 317 ~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~ 396 (643)
+..|-.+|..|+..|.......+.|+.++|++-.+ +.|... ..++.=|..|=||=.+
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~-----------K~~~E~------------~L~~KF~~lLNeKK~K 190 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSA-----------KEALET------------DLYKRFILVLNEKKTK 190 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH------------HHHHHHHHHHHhhHHH
Confidence 55788888888888877777777666666555442 222221 3455556666666666
Q ss_pred HhhhhhhhHHHHh
Q 006481 397 LRSNELKLERQLE 409 (643)
Q Consensus 397 LRS~eLKlerele 409 (643)
.|...-||..+++
T Consensus 191 IR~lq~~Ll~~~~ 203 (213)
T 1ik9_A 191 IRSLHNKLLNAAQ 203 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6655544444433
No 207
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=22.85 E-value=3.2e+02 Score=22.93 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=9.6
Q ss_pred HHHHHHHhHHHHHHHHhhhhhhhHHH
Q 006481 382 ILASEVIGLEEKALRLRSNELKLERQ 407 (643)
Q Consensus 382 ~LAaEVV~LEEk~l~LRS~eLKlere 407 (643)
.|--.|-.||.++-.-|+..-.++.|
T Consensus 18 ~Le~~v~~le~~Le~s~~~q~~~~~E 43 (72)
T 3cve_A 18 DLEGQLSEMEQRLEKSQSEQDAFRSN 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 208
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=22.65 E-value=2.8e+02 Score=21.75 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006481 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLA-----AENSSLTDSYNQQRSVVNQLKSEMEKLQEE 351 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa-----~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 351 (643)
=++..|++...++..-.-.++..|.+-+..++.|. ....+....||+-...+.++...++.+.+.
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~ 78 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999998888888884 345566666666655555555555444444
No 209
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.52 E-value=2.9e+02 Score=21.92 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006481 307 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 350 (643)
Q Consensus 307 qR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~ 350 (643)
.|-=++-++-.+.|..+...|...=.+....|+.|+.++..|.+
T Consensus 15 ~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 15 TRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555544444444445555555544444
No 210
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=22.13 E-value=1.3e+02 Score=26.92 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHH
Q 006481 345 MEKLQEEIKVQLVELESFRNEYA 367 (643)
Q Consensus 345 mE~Lq~Ei~aQ~~~le~l~aErd 367 (643)
++.|.+++..-...++.+..|||
T Consensus 20 i~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 20 IGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444
No 211
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=22.00 E-value=3.9e+02 Score=24.95 Aligned_cols=9 Identities=22% Similarity=0.442 Sum_probs=3.7
Q ss_pred HHHHHHhhh
Q 006481 364 NEYANVRLE 372 (643)
Q Consensus 364 aErdaArle 372 (643)
.|++.++..
T Consensus 98 ~~~~~a~~~ 106 (277)
T 2f1m_A 98 QEYDQALAD 106 (277)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444333
No 212
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.98 E-value=49 Score=34.97 Aligned_cols=14 Identities=21% Similarity=0.200 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 006481 546 EKEELVQALSSELA 559 (643)
Q Consensus 546 Ere~l~~aL~~es~ 559 (643)
.|--+.+||..+..
T Consensus 227 GKTllAkAiA~e~~ 240 (434)
T 4b4t_M 227 GKTLLARACAAQTN 240 (434)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhC
Confidence 45566777776643
No 213
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=21.84 E-value=4.8e+02 Score=24.14 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006481 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAEN 324 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~EN 324 (643)
+.+.+|.+--+.+-.+=-+.+-.++.-..+++.|...+
T Consensus 48 ~~v~~llkkh~~~~~el~~~~~~v~~l~~~~~~L~~~~ 85 (250)
T 1quu_A 48 TEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELD 85 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444334444444445555555566666666655
No 214
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=21.74 E-value=7e+02 Score=26.03 Aligned_cols=35 Identities=20% Similarity=0.455 Sum_probs=19.1
Q ss_pred HHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 006481 406 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 443 (643)
Q Consensus 406 rele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEK 443 (643)
++++.++....++..++. +-+.+....|.+++..+
T Consensus 185 k~~eK~~~k~~k~~~~~~---~a~~~Y~~~v~~~n~~~ 219 (486)
T 3haj_A 185 EQLKKLQDKIEKCKQDVL---KTKEKYEKSLKELDQGT 219 (486)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 455555544444444443 44566666777776443
No 215
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=21.70 E-value=3.1e+02 Score=21.90 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006481 337 VVNQLKSEMEKLQEEIKVQLVELESFRN 364 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a 364 (643)
.|.++..+.+.|+.+|.++...++.+..
T Consensus 37 ~v~~~l~~h~~l~~ei~~~~~~v~~~~~ 64 (119)
T 3uun_A 37 VVKDQFHTHEGYMMDLTAHQGRVGNILQ 64 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4445555555666666666555555543
No 216
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=21.58 E-value=8.1e+02 Score=26.71 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=36.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHH--hHHHHHHHHhhhhhhh
Q 006481 327 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVI--GLEEKALRLRSNELKL 404 (643)
Q Consensus 327 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV--~LEEk~l~LRS~eLKl 404 (643)
|...=+.-...|..||.-+...|.. ....+++..+.....|--...-.|+| ..|..+..|++..-++
T Consensus 107 isn~Ts~a~~~v~~ik~s~~~~q~~-----------~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 175 (461)
T 3ghg_B 107 VSQTSSSSFQYMYLLKDLWQKRQKQ-----------VKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSILENL 175 (461)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHH-----------HHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhccccCC-----------CCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHH
Confidence 3333334444455555555444432 23335666666666666666666554 3566666555444444
Q ss_pred HHHHhhh
Q 006481 405 ERQLENS 411 (643)
Q Consensus 405 erele~l 411 (643)
.+.++.|
T Consensus 176 ~~~i~~l 182 (461)
T 3ghg_B 176 RSKIQKL 182 (461)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4333333
No 217
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=21.54 E-value=2e+02 Score=26.24 Aligned_cols=44 Identities=30% Similarity=0.477 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHH
Q 006481 390 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 439 (643)
Q Consensus 390 LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aL 439 (643)
-|++.++|+++ .++|++.++ +.|+.++..++.+=..-...++++
T Consensus 55 HE~kklqLkse---~e~E~ae~k---~KYD~~lqe~ese~~~kkK~le~~ 98 (115)
T 3vem_A 55 FEEKKSILKAE---LERKMAEVQ---AEFRRKFHEVEAEHNTRTTKIEKD 98 (115)
T ss_dssp HHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888877 467788877 668888877655444333444444
No 218
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.50 E-value=1.7e+02 Score=24.49 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhCC
Q 006481 432 FQSTIEALQEEKKMMQSKLRKASGS 456 (643)
Q Consensus 432 l~s~i~aLQEEKklLqskLRka~~~ 456 (643)
-+..|+.|+.+-++|..||+.+..+
T Consensus 40 Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 40 ARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3456778889999999999887654
No 219
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.07 E-value=3.8e+02 Score=23.24 Aligned_cols=67 Identities=25% Similarity=0.363 Sum_probs=0.0
Q ss_pred CCchhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006481 283 TKHNEDFAALEQHIEDLT-----QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 350 (643)
Q Consensus 283 ~~~~~~faaLqqhIeDLT-----~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~ 350 (643)
+..+.++..+-.--+||| .|.+==.=|=.|..+|-+.| .||..|-.+..+....+..||.+.++|+.
T Consensus 3 ~~~~~~~~~~~ieaeDL~~~e~Pse~YWk~lAE~RR~AL~eaL-~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 3 SSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEAL-KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCccccchhHHHHHhcCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 220
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=20.95 E-value=1.4e+02 Score=21.74 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 006481 344 EMEKLQEEIKVQLVELESFRNEYANVRLE 372 (643)
Q Consensus 344 ~mE~Lq~Ei~aQ~~~le~l~aErdaArle 372 (643)
++.-|.+||.+-.-+.++++-|.++..+.
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45667777777777777777777665553
No 221
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.49 E-value=3.1e+02 Score=23.78 Aligned_cols=37 Identities=35% Similarity=0.482 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006481 313 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 350 (643)
Q Consensus 313 s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~ 350 (643)
..+|-+.| .||..|-....+....++.||.+.++|+.
T Consensus 30 r~AL~eaL-~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 30 RKALYEAL-KENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 57888877766666666666666666654
No 222
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.25 E-value=5.5e+02 Score=24.25 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006481 336 SVVNQLKSEMEKLQEEIKVQLV 357 (643)
Q Consensus 336 ~~v~qLk~~mE~Lq~Ei~aQ~~ 357 (643)
..|.+|-++|..|+.++.++++
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444433
No 223
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.21 E-value=1.7e+02 Score=26.36 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=12.3
Q ss_pred hHHHHHhhHHHHHHHHHhhhHHHHHH
Q 006481 561 SSKLKDLNNELSRKLEHQTQRLELLT 586 (643)
Q Consensus 561 ~s~Lk~lN~ELsrKLE~qTQRLELlt 586 (643)
+.+|..+|.+..+.|+....+-|.+.
T Consensus 94 i~~L~~E~~~~~~el~~~v~e~e~ll 119 (132)
T 1ykh_B 94 IDMLQKKLVEVEDEKIEAIKKKEKLM 119 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555444443
No 224
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.04 E-value=5.1e+02 Score=23.80 Aligned_cols=54 Identities=17% Similarity=0.381 Sum_probs=32.7
Q ss_pred HHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006481 387 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 450 (643)
Q Consensus 387 VV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskL 450 (643)
|+.|-+-+.+.++.. +++++.+..||..++.+|..++ -.++.|.-+...|+.|+
T Consensus 55 V~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~-------ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 55 VMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDAS-------AEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhchhhhhHh
Confidence 555555555444444 4457777778888877777543 34555666666666644
Done!