Query 006482
Match_columns 643
No_of_seqs 24 out of 26
Neff 2.8
Searched_HMMs 46136
Date Thu Mar 28 23:54:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02168 SMC_prok_B chromosom 98.2 0.0024 5.1E-08 72.2 30.6 163 287-449 677-839 (1179)
2 TIGR02168 SMC_prok_B chromosom 98.1 0.0056 1.2E-07 69.2 30.7 102 290-391 673-774 (1179)
3 TIGR02169 SMC_prok_A chromosom 98.0 0.02 4.3E-07 65.5 33.1 47 287-333 237-283 (1164)
4 TIGR02169 SMC_prok_A chromosom 97.9 0.0021 4.5E-08 73.1 24.3 11 74-84 25-35 (1164)
5 PRK02224 chromosome segregatio 97.9 0.018 3.9E-07 65.4 30.6 76 288-363 259-341 (880)
6 COG1196 Smc Chromosome segrega 97.7 0.087 1.9E-06 62.8 32.0 236 288-578 668-917 (1163)
7 PRK02224 chromosome segregatio 97.6 0.014 3.1E-07 66.2 23.1 119 327-453 521-639 (880)
8 KOG0161 Myosin class II heavy 97.5 0.042 9.1E-07 68.9 28.2 238 310-585 889-1144(1930)
9 PRK11637 AmiB activator; Provi 97.5 0.041 9E-07 58.5 24.0 79 284-362 44-122 (428)
10 PF09730 BicD: Microtubule-ass 97.5 0.25 5.5E-06 57.2 31.2 172 278-452 256-458 (717)
11 COG1196 Smc Chromosome segrega 97.4 0.031 6.7E-07 66.5 24.0 29 286-314 694-722 (1163)
12 PF07888 CALCOCO1: Calcium bin 97.2 0.063 1.4E-06 60.4 22.7 97 292-395 141-237 (546)
13 TIGR00606 rad50 rad50. This fa 97.2 0.075 1.6E-06 64.1 24.6 166 286-451 743-933 (1311)
14 PF08317 Spc7: Spc7 kinetochor 97.2 0.032 6.9E-07 57.9 18.7 45 294-338 156-200 (325)
15 PF09726 Macoilin: Transmembra 97.2 0.75 1.6E-05 53.2 36.7 168 283-450 414-610 (697)
16 KOG0250 DNA repair protein RAD 97.2 0.061 1.3E-06 64.1 22.6 136 311-446 298-441 (1074)
17 PF07888 CALCOCO1: Calcium bin 97.1 0.082 1.8E-06 59.5 21.8 62 290-351 160-221 (546)
18 PRK11637 AmiB activator; Provi 97.1 0.18 3.9E-06 53.8 23.0 76 287-362 54-129 (428)
19 PHA02562 46 endonuclease subun 97.0 0.14 3E-06 55.1 22.0 67 287-353 174-244 (562)
20 KOG0161 Myosin class II heavy 97.0 0.051 1.1E-06 68.1 20.5 156 293-455 1371-1540(1930)
21 PHA02562 46 endonuclease subun 97.0 0.2 4.4E-06 53.9 22.5 160 284-443 178-374 (562)
22 TIGR00606 rad50 rad50. This fa 96.9 0.096 2.1E-06 63.2 21.2 77 288-368 858-934 (1311)
23 PF15070 GOLGA2L5: Putative go 96.8 0.68 1.5E-05 52.9 26.2 228 294-576 143-391 (617)
24 TIGR01843 type_I_hlyD type I s 96.7 0.43 9.2E-06 48.9 21.8 48 323-370 131-178 (423)
25 KOG0980 Actin-binding protein 96.7 0.54 1.2E-05 55.7 24.6 64 291-354 334-397 (980)
26 smart00787 Spc7 Spc7 kinetocho 96.7 0.15 3.1E-06 53.7 18.6 36 405-440 231-266 (312)
27 PF12718 Tropomyosin_1: Tropom 96.6 0.32 6.9E-06 45.9 18.6 125 313-441 12-136 (143)
28 TIGR02680 conserved hypothetic 96.6 2.9 6.3E-05 51.5 32.6 111 275-390 208-323 (1353)
29 PRK09039 hypothetical protein; 96.6 0.24 5.3E-06 52.3 19.8 67 374-440 112-178 (343)
30 PF05701 WEMBL: Weak chloropla 96.6 0.59 1.3E-05 51.8 23.1 124 330-453 282-419 (522)
31 KOG0612 Rho-associated, coiled 96.5 0.25 5.5E-06 59.8 21.0 165 285-452 463-648 (1317)
32 COG1579 Zn-ribbon protein, pos 96.5 0.53 1.2E-05 48.4 20.6 102 296-397 12-122 (239)
33 TIGR01843 type_I_hlyD type I s 96.4 0.88 1.9E-05 46.6 21.9 40 339-378 140-179 (423)
34 PRK03918 chromosome segregatio 96.4 0.69 1.5E-05 52.7 23.1 83 357-439 612-699 (880)
35 PF12718 Tropomyosin_1: Tropom 96.4 0.44 9.5E-06 45.0 17.9 131 318-452 3-133 (143)
36 PRK03918 chromosome segregatio 96.3 1.1 2.3E-05 51.1 23.9 27 371-397 252-278 (880)
37 PRK04778 septation ring format 96.3 0.4 8.6E-06 53.4 20.1 147 306-452 315-466 (569)
38 PF04111 APG6: Autophagy prote 96.3 0.052 1.1E-06 56.6 12.4 118 289-442 11-128 (314)
39 PF09726 Macoilin: Transmembra 96.2 0.44 9.5E-06 55.0 19.9 61 293-353 417-477 (697)
40 PF04156 IncA: IncA protein; 96.2 0.23 5E-06 47.0 14.9 64 335-398 87-150 (191)
41 PF15619 Lebercilin: Ciliary p 96.1 1.8 3.8E-05 43.0 22.7 162 287-452 19-189 (194)
42 PF14662 CCDC155: Coiled-coil 96.0 1.9 4.2E-05 43.4 21.6 158 289-453 10-191 (193)
43 PRK09039 hypothetical protein; 96.0 1.4 3.1E-05 46.6 21.5 57 362-425 121-177 (343)
44 COG1842 PspA Phage shock prote 96.0 0.82 1.8E-05 46.3 18.6 115 288-425 25-139 (225)
45 PF00038 Filament: Intermediat 96.0 2.1 4.6E-05 43.2 23.2 35 538-572 262-296 (312)
46 PRK10361 DNA recombination pro 95.9 0.77 1.7E-05 51.2 19.7 128 314-442 39-180 (475)
47 PF08317 Spc7: Spc7 kinetochor 95.8 2.1 4.6E-05 44.7 21.3 59 277-344 106-178 (325)
48 PRK04778 septation ring format 95.8 1.5 3.2E-05 49.0 21.4 165 285-451 254-421 (569)
49 PF08614 ATG16: Autophagy prot 95.8 0.041 9E-07 53.1 8.2 130 324-453 19-170 (194)
50 COG1579 Zn-ribbon protein, pos 95.8 0.49 1.1E-05 48.6 16.1 117 337-453 11-136 (239)
51 PRK04863 mukB cell division pr 95.7 1.2 2.7E-05 55.3 22.2 132 323-459 356-489 (1486)
52 PRK04863 mukB cell division pr 95.7 0.66 1.4E-05 57.6 19.5 69 363-431 420-488 (1486)
53 PF08614 ATG16: Autophagy prot 95.6 0.13 2.8E-06 49.8 11.1 116 287-402 74-189 (194)
54 KOG0250 DNA repair protein RAD 95.6 1.3 2.8E-05 53.5 21.0 168 285-453 233-434 (1074)
55 PF05622 HOOK: HOOK protein; 95.6 0.0031 6.8E-08 71.1 0.0 158 291-452 197-402 (713)
56 KOG1853 LIS1-interacting prote 95.6 3.8 8.3E-05 43.4 24.5 103 427-534 157-261 (333)
57 TIGR02680 conserved hypothetic 95.5 2.5 5.5E-05 52.0 23.7 51 535-586 1083-1133(1353)
58 PF00038 Filament: Intermediat 95.3 3.6 7.9E-05 41.6 24.5 34 287-320 54-87 (312)
59 smart00787 Spc7 Spc7 kinetocho 95.3 3.6 7.9E-05 43.5 20.9 10 277-286 101-110 (312)
60 PF00261 Tropomyosin: Tropomyo 95.3 3.7 7.9E-05 41.1 23.0 45 289-333 3-47 (237)
61 KOG0933 Structural maintenance 95.2 2.6 5.6E-05 51.0 21.2 157 294-453 748-932 (1174)
62 PF10186 Atg14: UV radiation r 95.1 2.7 5.8E-05 41.4 18.4 26 288-313 21-46 (302)
63 PF00261 Tropomyosin: Tropomyo 95.1 3.5 7.5E-05 41.3 19.2 27 371-397 127-153 (237)
64 PRK09841 cryptic autophosphory 95.0 0.72 1.6E-05 52.7 16.0 70 326-400 257-326 (726)
65 KOG0933 Structural maintenance 95.0 1.3 2.9E-05 53.2 18.3 158 282-446 782-946 (1174)
66 PF09755 DUF2046: Uncharacteri 94.9 6.4 0.00014 42.2 32.2 41 290-330 23-63 (310)
67 PF05911 DUF869: Plant protein 94.9 1.7 3.6E-05 51.1 18.8 120 292-411 97-226 (769)
68 COG4372 Uncharacterized protei 94.9 0.68 1.5E-05 51.0 14.7 104 337-447 75-178 (499)
69 PF10168 Nup88: Nuclear pore c 94.9 5.1 0.00011 46.8 22.4 57 314-370 535-592 (717)
70 TIGR01000 bacteriocin_acc bact 94.8 7.1 0.00015 42.2 22.1 26 386-411 237-262 (457)
71 PF12128 DUF3584: Protein of u 94.8 13 0.00029 45.3 30.4 56 531-586 607-662 (1201)
72 PF13166 AAA_13: AAA domain 94.8 3.3 7.1E-05 46.3 20.0 117 330-448 323-452 (712)
73 PF04111 APG6: Autophagy prote 94.5 0.49 1.1E-05 49.5 12.3 117 336-453 9-125 (314)
74 TIGR01000 bacteriocin_acc bact 94.5 8.8 0.00019 41.5 22.0 23 431-453 288-310 (457)
75 PF05700 BCAS2: Breast carcino 94.4 2 4.4E-05 42.8 15.7 95 321-425 119-215 (221)
76 KOG0971 Microtubule-associated 94.4 3.9 8.4E-05 49.3 20.0 101 337-443 326-440 (1243)
77 PF07111 HCR: Alpha helical co 94.4 3.6 7.9E-05 48.1 19.4 106 341-452 138-274 (739)
78 PF09789 DUF2353: Uncharacteri 94.3 2.1 4.5E-05 45.9 16.3 142 302-452 66-207 (319)
79 PF10174 Cast: RIM-binding pro 94.3 2.8 6.1E-05 49.4 18.7 151 292-451 1-166 (775)
80 PF04156 IncA: IncA protein; 94.2 2.1 4.5E-05 40.6 14.7 76 308-397 81-156 (191)
81 PF10186 Atg14: UV radiation r 94.2 4.7 0.0001 39.7 17.6 12 516-527 223-234 (302)
82 PF14197 Cep57_CLD_2: Centroso 94.2 0.4 8.6E-06 40.8 8.8 63 334-396 3-65 (69)
83 PF04012 PspA_IM30: PspA/IM30 94.2 5.7 0.00012 38.7 17.9 32 290-321 26-57 (221)
84 PF12128 DUF3584: Protein of u 94.1 19 0.0004 44.1 29.5 62 337-398 636-698 (1201)
85 TIGR03007 pepcterm_ChnLen poly 94.1 10 0.00022 40.9 21.4 37 359-395 256-292 (498)
86 PF04849 HAP1_N: HAP1 N-termin 93.9 4 8.6E-05 43.6 17.5 31 284-314 157-187 (306)
87 PF13514 AAA_27: AAA domain 93.9 9.7 0.00021 45.8 22.5 48 413-460 452-499 (1111)
88 KOG1103 Predicted coiled-coil 93.9 10 0.00022 42.0 20.6 66 304-369 106-172 (561)
89 KOG0994 Extracellular matrix g 93.9 9.1 0.0002 47.4 21.8 62 322-383 1605-1666(1758)
90 KOG0979 Structural maintenance 93.8 8.6 0.00019 46.7 21.5 176 275-453 141-358 (1072)
91 PF10174 Cast: RIM-binding pro 93.8 9.3 0.0002 45.2 21.6 172 280-451 217-395 (775)
92 PF09789 DUF2353: Uncharacteri 93.7 1.9 4.1E-05 46.2 14.7 87 288-374 66-171 (319)
93 KOG0994 Extracellular matrix g 93.7 5.4 0.00012 49.2 19.6 127 287-443 1164-1290(1758)
94 KOG0971 Microtubule-associated 93.7 6.8 0.00015 47.3 20.1 125 330-455 404-546 (1243)
95 KOG0996 Structural maintenance 93.7 9.7 0.00021 46.9 21.7 151 290-440 415-583 (1293)
96 COG4942 Membrane-bound metallo 93.6 5.5 0.00012 44.2 18.2 92 337-459 39-130 (420)
97 TIGR03007 pepcterm_ChnLen poly 93.4 4.6 0.0001 43.5 17.1 34 288-321 198-231 (498)
98 KOG4674 Uncharacterized conser 93.3 11 0.00024 48.2 22.1 162 288-456 1175-1382(1822)
99 PRK11281 hypothetical protein; 93.2 2.8 6.1E-05 51.0 16.7 15 381-395 195-209 (1113)
100 PF06160 EzrA: Septation ring 93.1 13 0.00028 42.0 20.6 118 306-423 311-431 (560)
101 PF05667 DUF812: Protein of un 93.1 13 0.00028 42.8 20.8 92 296-387 323-417 (594)
102 KOG0977 Nuclear envelope prote 93.0 4.6 9.9E-05 46.1 17.0 61 532-592 322-387 (546)
103 KOG0243 Kinesin-like protein [ 93.0 6.5 0.00014 47.8 19.0 135 310-455 443-588 (1041)
104 PF04849 HAP1_N: HAP1 N-termin 93.0 7.6 0.00016 41.6 17.6 63 286-355 61-123 (306)
105 PF13851 GAS: Growth-arrest sp 93.0 11 0.00023 37.6 19.0 45 286-330 8-52 (201)
106 KOG4674 Uncharacterized conser 93.0 12 0.00027 47.9 21.9 155 288-442 81-260 (1822)
107 KOG0999 Microtubule-associated 92.9 11 0.00025 43.5 19.8 153 286-440 7-162 (772)
108 KOG0996 Structural maintenance 92.9 8.4 0.00018 47.5 19.6 58 533-590 1073-1137(1293)
109 PRK10476 multidrug resistance 92.8 2.7 5.9E-05 43.3 14.0 6 454-459 214-219 (346)
110 KOG4593 Mitotic checkpoint pro 92.8 15 0.00033 43.1 20.9 115 338-453 160-294 (716)
111 KOG0982 Centrosomal protein Nu 92.8 7.3 0.00016 43.7 17.7 65 379-443 305-369 (502)
112 cd07651 F-BAR_PombeCdc15_like 92.8 11 0.00024 37.4 18.5 134 306-445 58-206 (236)
113 KOG0977 Nuclear envelope prote 92.8 7.3 0.00016 44.6 18.1 59 322-387 155-213 (546)
114 COG0419 SbcC ATPase involved i 92.7 26 0.00057 41.4 30.5 39 414-452 404-442 (908)
115 PF13514 AAA_27: AAA domain 92.6 14 0.0003 44.6 21.1 33 336-368 801-833 (1111)
116 KOG0976 Rho/Rac1-interacting s 92.6 9.5 0.00021 45.8 19.0 139 292-430 321-480 (1265)
117 PF12795 MscS_porin: Mechanose 92.5 11 0.00024 37.6 17.3 155 286-440 37-212 (240)
118 PF12325 TMF_TATA_bd: TATA ele 92.4 4.4 9.5E-05 37.9 13.4 65 333-397 13-80 (120)
119 PF06008 Laminin_I: Laminin Do 92.4 9.4 0.0002 38.5 16.9 70 526-595 172-243 (264)
120 PF00769 ERM: Ezrin/radixin/mo 92.1 3.1 6.8E-05 42.4 13.1 105 337-448 13-117 (246)
121 KOG4643 Uncharacterized coiled 92.0 5.9 0.00013 48.1 16.8 119 333-456 202-344 (1195)
122 KOG0978 E3 ubiquitin ligase in 92.0 23 0.0005 41.8 21.2 149 288-436 401-575 (698)
123 PLN03188 kinesin-12 family pro 92.0 3.1 6.6E-05 51.3 14.8 68 303-390 1099-1167(1320)
124 KOG0995 Centromere-associated 91.9 29 0.00063 40.2 24.5 229 318-590 262-512 (581)
125 PF00769 ERM: Ezrin/radixin/mo 91.8 7.3 0.00016 39.8 15.3 50 531-583 186-241 (246)
126 PRK01156 chromosome segregatio 91.6 32 0.0007 40.1 22.5 70 356-425 628-707 (895)
127 KOG4673 Transcription factor T 91.6 26 0.00056 41.7 20.7 96 292-387 521-635 (961)
128 TIGR01010 BexC_CtrB_KpsE polys 91.6 10 0.00023 39.5 16.5 63 336-398 170-234 (362)
129 PRK15422 septal ring assembly 91.5 1.4 3.1E-05 39.0 8.7 67 389-455 8-74 (79)
130 cd07647 F-BAR_PSTPIP The F-BAR 91.4 17 0.00036 36.4 18.3 130 305-440 57-202 (239)
131 PF14915 CCDC144C: CCDC144C pr 91.4 24 0.00051 38.1 20.4 150 290-443 102-269 (305)
132 PRK11519 tyrosine kinase; Prov 91.0 10 0.00022 43.7 17.1 17 58-74 51-67 (719)
133 COG0419 SbcC ATPase involved i 90.9 40 0.00086 39.9 22.2 32 318-349 228-259 (908)
134 PF05622 HOOK: HOOK protein; 90.9 0.069 1.5E-06 60.6 0.0 74 374-447 335-411 (713)
135 KOG4673 Transcription factor T 90.8 43 0.00092 40.0 27.6 61 541-601 587-647 (961)
136 KOG0976 Rho/Rac1-interacting s 90.7 34 0.00073 41.5 20.8 65 519-592 451-521 (1265)
137 PF10473 CENP-F_leu_zip: Leuci 90.7 16 0.00036 35.1 17.3 78 338-415 19-96 (140)
138 PRK11281 hypothetical protein; 90.6 52 0.0011 40.7 27.6 47 339-385 131-177 (1113)
139 PF14662 CCDC155: Coiled-coil 90.6 22 0.00047 36.2 17.6 23 532-554 166-188 (193)
140 PF11932 DUF3450: Protein of u 90.5 16 0.00035 36.7 16.1 62 307-368 34-95 (251)
141 PF09744 Jnk-SapK_ap_N: JNK_SA 90.5 9.9 0.00021 37.0 14.1 32 424-455 86-117 (158)
142 TIGR01005 eps_transp_fam exopo 90.5 22 0.00048 40.7 19.1 18 436-453 385-402 (754)
143 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.4 15 0.00031 34.0 17.6 30 423-452 101-130 (132)
144 cd07671 F-BAR_PSTPIP1 The F-BA 90.4 23 0.00049 36.2 17.5 116 315-440 78-202 (242)
145 PF02050 FliJ: Flagellar FliJ 90.3 9.8 0.00021 31.9 13.5 56 378-440 45-100 (123)
146 PF05701 WEMBL: Weak chloropla 90.1 37 0.00079 38.2 22.9 118 307-424 287-411 (522)
147 PF09755 DUF2046: Uncharacteri 90.0 31 0.00068 37.2 21.5 119 334-452 133-279 (310)
148 PF11932 DUF3450: Protein of u 90.0 8.7 0.00019 38.6 13.8 62 290-351 38-99 (251)
149 PF05546 She9_MDM33: She9 / Md 90.0 25 0.00055 36.1 17.5 103 315-424 9-124 (207)
150 PF15070 GOLGA2L5: Putative go 89.8 31 0.00068 40.0 19.6 93 290-393 83-175 (617)
151 KOG0964 Structural maintenance 89.7 37 0.00079 41.8 20.3 152 308-459 230-382 (1200)
152 KOG0288 WD40 repeat protein Ti 89.5 8.9 0.00019 42.8 14.4 18 318-335 13-30 (459)
153 PF15619 Lebercilin: Ciliary p 89.4 25 0.00053 35.2 19.9 118 310-427 21-146 (194)
154 COG3074 Uncharacterized protei 89.3 3.1 6.6E-05 36.7 8.7 67 389-455 8-74 (79)
155 PF01576 Myosin_tail_1: Myosin 89.2 0.11 2.5E-06 60.6 0.0 127 320-453 354-480 (859)
156 cd07655 F-BAR_PACSIN The F-BAR 89.1 28 0.00061 35.4 19.1 130 305-444 61-223 (258)
157 KOG0249 LAR-interacting protei 89.1 9.6 0.00021 45.1 14.8 78 363-443 176-253 (916)
158 TIGR00998 8a0101 efflux pump m 89.0 21 0.00046 36.1 15.7 8 453-460 209-216 (334)
159 PF05667 DUF812: Protein of un 88.8 48 0.001 38.4 20.0 41 533-584 490-530 (594)
160 PRK10884 SH3 domain-containing 88.8 5.1 0.00011 40.3 11.1 10 432-441 158-167 (206)
161 PRK10929 putative mechanosensi 88.8 42 0.00091 41.5 20.5 63 377-439 172-234 (1109)
162 TIGR03017 EpsF chain length de 88.5 37 0.00081 36.1 24.9 34 335-368 170-203 (444)
163 PF05557 MAD: Mitotic checkpoi 88.3 0.14 3.1E-06 58.2 0.0 18 436-453 283-300 (722)
164 TIGR02894 DNA_bind_RsfA transc 88.2 3.4 7.5E-05 40.7 9.3 70 304-384 86-155 (161)
165 PRK10246 exonuclease subunit S 88.2 70 0.0015 38.9 24.0 12 288-299 531-542 (1047)
166 PRK01156 chromosome segregatio 88.2 59 0.0013 38.0 21.4 9 622-630 875-883 (895)
167 TIGR03794 NHPM_micro_HlyD NHPM 88.1 40 0.00087 36.0 18.3 24 428-451 228-251 (421)
168 cd07653 F-BAR_CIP4-like The F- 88.1 29 0.00063 34.3 17.6 133 305-440 62-211 (251)
169 PF11559 ADIP: Afadin- and alp 88.1 22 0.00048 33.0 14.3 60 285-351 29-88 (151)
170 PF09731 Mitofilin: Mitochondr 88.0 49 0.0011 36.9 20.0 29 287-315 258-287 (582)
171 PF09304 Cortex-I_coil: Cortex 87.8 17 0.00038 33.9 13.0 87 284-373 13-100 (107)
172 KOG0982 Centrosomal protein Nu 87.7 38 0.00083 38.3 17.7 82 362-452 276-364 (502)
173 KOG0612 Rho-associated, coiled 87.1 35 0.00076 42.6 18.3 29 540-569 1013-1041(1317)
174 TIGR02977 phageshock_pspA phag 87.0 35 0.00075 34.0 18.4 15 288-302 25-39 (219)
175 KOG0964 Structural maintenance 86.9 88 0.0019 38.8 21.0 150 306-455 326-502 (1200)
176 KOG4643 Uncharacterized coiled 86.8 69 0.0015 39.7 20.2 21 417-437 534-554 (1195)
177 PF10168 Nup88: Nuclear pore c 86.8 18 0.00038 42.5 15.4 60 284-349 533-592 (717)
178 COG1340 Uncharacterized archae 86.8 49 0.0011 35.6 21.4 94 360-453 161-254 (294)
179 PF05483 SCP-1: Synaptonemal c 86.6 79 0.0017 37.8 20.4 63 389-451 591-653 (786)
180 KOG1029 Endocytic adaptor prot 86.6 50 0.0011 39.9 18.6 29 397-425 547-575 (1118)
181 KOG0804 Cytoplasmic Zn-finger 86.6 29 0.00063 39.4 16.1 42 158-203 133-177 (493)
182 PRK10361 DNA recombination pro 86.5 65 0.0014 36.6 19.3 55 404-458 145-204 (475)
183 KOG0239 Kinesin (KAR3 subfamil 86.4 41 0.00088 39.4 17.9 85 371-459 234-318 (670)
184 cd07653 F-BAR_CIP4-like The F- 86.3 36 0.00079 33.6 18.6 127 287-416 5-150 (251)
185 KOG0980 Actin-binding protein 86.2 91 0.002 38.1 22.8 25 533-557 684-708 (980)
186 PF15035 Rootletin: Ciliary ro 86.1 23 0.0005 35.1 13.7 55 363-420 126-180 (182)
187 PRK10884 SH3 domain-containing 86.1 7.9 0.00017 38.9 10.7 77 282-368 88-164 (206)
188 COG5185 HEC1 Protein involved 86.0 23 0.00051 40.5 15.1 54 532-585 488-548 (622)
189 cd07675 F-BAR_FNBP1L The F-BAR 85.8 34 0.00073 35.7 15.3 137 316-458 89-234 (252)
190 PF05557 MAD: Mitotic checkpoi 85.6 4.9 0.00011 46.1 10.1 29 428-456 560-588 (722)
191 PF06548 Kinesin-related: Kine 85.5 24 0.00053 39.9 14.9 109 304-453 330-439 (488)
192 COG2433 Uncharacterized conser 85.3 10 0.00022 44.1 12.2 43 337-379 423-465 (652)
193 PF08647 BRE1: BRE1 E3 ubiquit 85.1 12 0.00025 33.3 10.1 72 284-359 21-92 (96)
194 PF10473 CENP-F_leu_zip: Leuci 84.9 39 0.00083 32.7 17.5 52 336-387 52-103 (140)
195 TIGR02971 heterocyst_DevB ABC 84.9 48 0.001 33.7 17.2 23 348-370 95-117 (327)
196 TIGR02473 flagell_FliJ flagell 84.9 28 0.00061 31.1 14.2 32 406-437 82-113 (141)
197 KOG0243 Kinesin-like protein [ 84.8 63 0.0014 39.9 18.8 88 294-386 404-491 (1041)
198 KOG1962 B-cell receptor-associ 84.7 13 0.00028 38.2 11.5 61 390-450 149-209 (216)
199 TIGR03185 DNA_S_dndD DNA sulfu 84.6 80 0.0017 36.1 19.2 37 413-450 300-336 (650)
200 cd07672 F-BAR_PSTPIP2 The F-BA 84.6 50 0.0011 33.7 17.8 106 314-419 78-188 (240)
201 PF14197 Cep57_CLD_2: Centroso 84.3 14 0.00031 31.6 9.9 52 305-356 16-67 (69)
202 PF06160 EzrA: Septation ring 84.2 81 0.0017 35.8 21.6 169 285-455 250-435 (560)
203 PF13166 AAA_13: AAA domain 84.0 81 0.0018 35.7 22.2 19 612-630 693-711 (712)
204 TIGR02231 conserved hypothetic 83.7 8.2 0.00018 42.5 10.5 45 411-455 129-173 (525)
205 PF09787 Golgin_A5: Golgin sub 83.4 83 0.0018 35.3 20.4 99 531-633 355-466 (511)
206 PF13815 Dzip-like_N: Iguana/D 83.2 9.1 0.0002 34.8 8.9 81 285-365 25-116 (118)
207 COG4942 Membrane-bound metallo 83.0 87 0.0019 35.2 22.8 25 289-313 47-71 (420)
208 PF07798 DUF1640: Protein of u 82.9 47 0.001 32.1 16.3 33 386-421 121-153 (177)
209 PF09730 BicD: Microtubule-ass 82.9 1.1E+02 0.0024 36.4 31.7 99 341-443 53-169 (717)
210 PF05911 DUF869: Plant protein 82.8 1.2E+02 0.0025 36.5 22.8 167 286-454 23-210 (769)
211 TIGR03185 DNA_S_dndD DNA sulfu 82.8 95 0.0021 35.5 22.5 55 285-339 207-261 (650)
212 KOG0978 E3 ubiquitin ligase in 82.6 75 0.0016 37.7 17.8 48 304-351 485-532 (698)
213 KOG4460 Nuclear pore complex, 82.5 94 0.002 36.5 18.1 132 315-453 559-721 (741)
214 TIGR01005 eps_transp_fam exopo 82.5 1E+02 0.0022 35.6 22.4 19 422-440 378-396 (754)
215 PF08826 DMPK_coil: DMPK coile 82.5 7.4 0.00016 32.9 7.4 53 347-399 5-60 (61)
216 PF11559 ADIP: Afadin- and alp 82.3 43 0.00093 31.2 15.7 75 336-410 52-126 (151)
217 PF10234 Cluap1: Clusterin-ass 82.0 59 0.0013 34.4 15.3 69 380-448 171-239 (267)
218 PRK09973 putative outer membra 82.0 4.2 9.1E-05 36.5 6.1 44 337-380 25-68 (85)
219 TIGR03017 EpsF chain length de 81.8 77 0.0017 33.8 18.3 30 276-307 199-228 (444)
220 PF04380 BMFP: Membrane fusoge 81.6 8.2 0.00018 33.4 7.6 66 328-393 12-79 (79)
221 PF06005 DUF904: Protein of un 81.3 15 0.00033 31.7 9.0 46 311-356 14-59 (72)
222 PF13942 Lipoprotein_20: YfhG 80.9 5.2 0.00011 40.1 6.9 50 538-587 109-158 (179)
223 PRK10722 hypothetical protein; 80.6 5.8 0.00013 41.4 7.4 51 538-588 155-205 (247)
224 PRK15178 Vi polysaccharide exp 80.6 1.1E+02 0.0023 34.6 17.9 58 311-368 215-274 (434)
225 cd07649 F-BAR_GAS7 The F-BAR ( 80.4 72 0.0016 32.6 17.0 58 315-372 78-136 (233)
226 KOG2264 Exostosin EXT1L [Signa 80.0 11 0.00024 43.8 10.0 79 302-380 73-151 (907)
227 PF12795 MscS_porin: Mechanose 79.8 70 0.0015 32.1 14.6 169 282-450 13-208 (240)
228 PF07106 TBPIP: Tat binding pr 79.8 10 0.00023 35.9 8.4 67 380-458 74-140 (169)
229 PF04728 LPP: Lipoprotein leuc 79.7 8.2 0.00018 32.4 6.6 45 330-381 4-48 (56)
230 PF09738 DUF2051: Double stran 79.6 93 0.002 33.4 16.4 32 337-368 78-109 (302)
231 cd07658 F-BAR_NOSTRIN The F-BA 79.5 75 0.0016 32.2 17.3 131 304-440 58-220 (239)
232 PF08647 BRE1: BRE1 E3 ubiquit 79.4 40 0.00087 30.0 11.3 72 322-402 3-74 (96)
233 TIGR03794 NHPM_micro_HlyD NHPM 79.4 94 0.002 33.3 17.5 7 453-459 258-264 (421)
234 PF10481 CENP-F_N: Cenp-F N-te 79.4 98 0.0021 33.5 16.2 17 288-304 19-35 (307)
235 PRK03598 putative efflux pump 79.3 81 0.0017 32.5 15.7 10 452-461 207-216 (331)
236 PRK10698 phage shock protein P 79.2 76 0.0016 32.1 16.2 31 288-318 25-55 (222)
237 PF07106 TBPIP: Tat binding pr 79.1 25 0.00054 33.3 10.6 63 337-399 73-137 (169)
238 PF01576 Myosin_tail_1: Myosin 79.0 0.62 1.4E-05 54.7 0.0 104 300-410 615-718 (859)
239 PF05483 SCP-1: Synaptonemal c 78.8 1.6E+02 0.0034 35.5 20.7 128 319-453 496-627 (786)
240 KOG0018 Structural maintenance 78.7 1.9E+02 0.004 36.3 20.2 32 283-314 230-261 (1141)
241 PF10146 zf-C4H2: Zinc finger- 78.6 67 0.0014 33.1 14.1 43 407-449 54-96 (230)
242 TIGR00998 8a0101 efflux pump m 78.4 81 0.0018 32.0 16.0 14 288-301 81-94 (334)
243 KOG0999 Microtubule-associated 78.2 1.5E+02 0.0033 35.0 20.2 119 318-444 92-243 (772)
244 KOG0946 ER-Golgi vesicle-tethe 78.2 1.6E+02 0.0034 36.1 18.4 44 310-353 673-716 (970)
245 PRK15396 murein lipoprotein; P 78.1 7.1 0.00015 34.4 6.2 45 330-381 26-70 (78)
246 PRK10929 putative mechanosensi 78.0 1.9E+02 0.0042 36.1 20.3 38 405-442 193-230 (1109)
247 KOG4438 Centromere-associated 78.0 1.3E+02 0.0028 34.1 21.3 99 361-459 198-301 (446)
248 cd07680 F-BAR_PACSIN1 The F-BA 77.9 95 0.002 32.5 17.8 96 339-444 115-223 (258)
249 PF02050 FliJ: Flagellar FliJ 77.8 41 0.00088 28.2 15.3 76 308-383 12-92 (123)
250 TIGR02977 phageshock_pspA phag 77.6 80 0.0017 31.5 15.4 41 341-381 36-76 (219)
251 KOG0239 Kinesin (KAR3 subfamil 77.5 88 0.0019 36.8 16.3 43 381-423 230-272 (670)
252 COG3096 MukB Uncharacterized p 77.4 1.8E+02 0.004 35.6 19.2 108 322-436 980-1110(1480)
253 COG3524 KpsE Capsule polysacch 77.2 44 0.00095 36.6 12.8 112 312-423 153-268 (372)
254 TIGR03752 conj_TIGR03752 integ 77.2 16 0.00034 41.4 9.9 75 378-452 59-134 (472)
255 TIGR01069 mutS2 MutS2 family p 77.0 57 0.0012 38.6 14.8 19 516-534 653-671 (771)
256 PF06005 DUF904: Protein of un 76.9 25 0.00055 30.4 9.1 59 325-383 7-65 (72)
257 PRK00409 recombination and DNA 76.7 52 0.0011 38.9 14.4 18 516-533 665-682 (782)
258 KOG0249 LAR-interacting protei 76.7 64 0.0014 38.7 14.8 74 367-443 205-278 (916)
259 PF05615 THOC7: Tho complex su 76.5 60 0.0013 30.0 12.0 98 275-373 23-124 (139)
260 PF05262 Borrelia_P83: Borreli 76.4 92 0.002 35.5 15.6 19 53-71 11-29 (489)
261 PF04012 PspA_IM30: PspA/IM30 76.3 81 0.0017 30.9 15.8 21 435-455 127-147 (221)
262 PRK05689 fliJ flagellar biosyn 76.3 64 0.0014 29.7 13.3 40 405-444 84-123 (147)
263 PF10267 Tmemb_cc2: Predicted 76.2 54 0.0012 36.4 13.5 96 325-441 215-312 (395)
264 COG3074 Uncharacterized protei 76.2 17 0.00038 32.2 7.9 58 287-344 18-75 (79)
265 cd07666 BAR_SNX7 The Bin/Amphi 75.7 1.1E+02 0.0023 32.0 20.6 157 277-450 43-233 (243)
266 COG4477 EzrA Negative regulato 75.4 86 0.0019 36.4 15.0 26 306-331 314-339 (570)
267 KOG0804 Cytoplasmic Zn-finger 75.4 1.1E+02 0.0024 34.9 15.7 28 16-43 43-70 (493)
268 cd00632 Prefoldin_beta Prefold 74.9 61 0.0013 28.8 11.8 30 327-356 4-33 (105)
269 COG4026 Uncharacterized protei 74.6 20 0.00042 37.8 9.2 66 339-411 138-203 (290)
270 PF03962 Mnd1: Mnd1 family; I 74.4 55 0.0012 32.4 11.9 79 311-397 30-122 (188)
271 PRK15422 septal ring assembly 74.4 22 0.00048 31.8 8.2 60 287-346 18-77 (79)
272 cd07622 BAR_SNX4 The Bin/Amphi 74.2 99 0.0021 30.9 20.6 148 283-443 10-167 (201)
273 PF13851 GAS: Growth-arrest sp 74.2 99 0.0022 30.9 18.9 57 295-351 28-84 (201)
274 PRK09841 cryptic autophosphory 74.1 1.6E+02 0.0035 34.3 17.2 18 57-74 50-67 (726)
275 PF07111 HCR: Alpha helical co 73.7 1.9E+02 0.0042 34.7 17.6 49 405-453 161-209 (739)
276 PF11180 DUF2968: Protein of u 73.5 1E+02 0.0023 31.5 13.7 38 411-448 145-182 (192)
277 PF14389 Lzipper-MIP1: Leucine 73.5 17 0.00036 32.2 7.3 62 337-398 9-74 (88)
278 KOG4005 Transcription factor X 73.4 35 0.00075 36.2 10.6 64 283-353 86-149 (292)
279 PF05010 TACC: Transforming ac 73.3 1.1E+02 0.0025 31.2 21.4 68 358-425 70-137 (207)
280 cd07647 F-BAR_PSTPIP The F-BAR 72.9 1.1E+02 0.0023 30.8 13.7 86 290-377 102-187 (239)
281 PRK02119 hypothetical protein; 72.9 30 0.00065 29.8 8.5 57 386-456 3-59 (73)
282 KOG4360 Uncharacterized coiled 72.6 51 0.0011 38.1 12.4 138 308-445 76-237 (596)
283 TIGR02231 conserved hypothetic 72.5 32 0.0007 38.0 10.8 30 337-366 72-101 (525)
284 KOG2129 Uncharacterized conser 72.4 1.2E+02 0.0025 34.8 14.8 212 271-511 149-379 (552)
285 KOG0018 Structural maintenance 72.3 41 0.00088 41.6 12.2 60 386-446 277-336 (1141)
286 PRK03598 putative efflux pump 72.1 88 0.0019 32.2 13.2 16 363-378 144-159 (331)
287 COG2433 Uncharacterized conser 71.3 61 0.0013 38.1 12.8 40 385-424 450-492 (652)
288 cd07676 F-BAR_FBP17 The F-BAR 71.2 1.3E+02 0.0028 31.0 17.7 151 304-457 63-234 (253)
289 PF09311 Rab5-bind: Rabaptin-l 71.0 8 0.00017 37.6 5.3 85 290-381 11-95 (181)
290 cd07656 F-BAR_srGAP The F-BAR 71.0 1.3E+02 0.0028 30.9 15.8 126 316-444 78-218 (241)
291 PF06248 Zw10: Centromere/kine 70.7 1.3E+02 0.0028 34.0 15.1 15 338-352 48-62 (593)
292 PF12777 MT: Microtubule-bindi 70.5 48 0.001 35.1 11.2 99 290-388 217-315 (344)
293 cd07598 BAR_FAM92 The Bin/Amph 70.3 1.3E+02 0.0028 30.5 20.3 50 286-335 10-67 (211)
294 PF07200 Mod_r: Modifier of ru 70.2 92 0.002 28.8 13.7 73 317-397 43-115 (150)
295 KOG1029 Endocytic adaptor prot 70.0 1.6E+02 0.0034 36.1 15.8 39 361-399 483-521 (1118)
296 PF04728 LPP: Lipoprotein leuc 69.8 23 0.0005 29.8 6.9 46 315-372 3-48 (56)
297 PF10146 zf-C4H2: Zinc finger- 69.4 1.4E+02 0.0031 30.8 14.6 34 335-368 31-64 (230)
298 cd07666 BAR_SNX7 The Bin/Amphi 69.0 1.5E+02 0.0033 30.9 21.5 138 296-443 56-211 (243)
299 PF06637 PV-1: PV-1 protein (P 68.6 1.4E+02 0.0029 33.8 14.2 40 288-330 264-307 (442)
300 cd09238 V_Alix_like_1 Protein- 68.5 1E+02 0.0023 32.7 13.2 82 286-367 71-158 (339)
301 PRK15136 multidrug efflux syst 67.9 1.7E+02 0.0037 31.5 14.7 8 453-460 220-227 (390)
302 PF05103 DivIVA: DivIVA protei 67.8 3.8 8.2E-05 36.5 2.1 31 322-352 39-69 (131)
303 KOG0995 Centromere-associated 67.6 2.6E+02 0.0055 32.9 21.6 89 294-382 308-400 (581)
304 TIGR00634 recN DNA repair prot 67.5 2.2E+02 0.0048 32.2 20.4 34 290-323 171-204 (563)
305 COG3599 DivIVA Cell division i 67.2 1.4E+02 0.0031 30.6 13.2 57 366-423 83-140 (212)
306 PF08826 DMPK_coil: DMPK coile 67.0 42 0.00091 28.5 7.9 35 414-448 26-60 (61)
307 COG1566 EmrA Multidrug resista 66.9 1.3E+02 0.0028 32.9 13.6 114 338-459 100-219 (352)
308 cd07652 F-BAR_Rgd1 The F-BAR ( 66.4 1.5E+02 0.0033 30.0 16.4 54 304-357 61-114 (234)
309 COG3883 Uncharacterized protei 66.2 1.9E+02 0.0041 30.9 22.3 79 289-371 33-111 (265)
310 PF11180 DUF2968: Protein of u 66.1 1.4E+02 0.003 30.7 12.7 57 341-397 110-166 (192)
311 KOG0962 DNA repair protein RAD 65.9 3.8E+02 0.0082 34.3 21.8 85 283-367 846-930 (1294)
312 KOG0979 Structural maintenance 65.8 3.5E+02 0.0076 33.9 20.1 39 328-366 247-285 (1072)
313 COG1842 PspA Phage shock prote 65.6 1.7E+02 0.0037 30.1 15.0 88 337-424 32-131 (225)
314 PF13863 DUF4200: Domain of un 65.6 1E+02 0.0022 27.5 14.2 21 405-425 87-107 (126)
315 PF03938 OmpH: Outer membrane 65.5 1.1E+02 0.0024 28.1 13.4 46 324-369 24-69 (158)
316 PF12777 MT: Microtubule-bindi 65.4 33 0.0007 36.3 8.7 38 386-423 243-280 (344)
317 PF09738 DUF2051: Double stran 65.2 1.1E+02 0.0025 32.8 12.6 74 288-361 106-179 (302)
318 PF08172 CASP_C: CASP C termin 65.2 34 0.00073 35.5 8.6 33 319-351 3-35 (248)
319 PF14992 TMCO5: TMCO5 family 64.9 1.1E+02 0.0024 32.8 12.4 105 291-399 22-137 (280)
320 PF04899 MbeD_MobD: MbeD/MobD 64.8 68 0.0015 27.9 9.0 61 289-349 9-69 (70)
321 PF13863 DUF4200: Domain of un 64.8 1E+02 0.0023 27.4 14.4 25 416-440 84-108 (126)
322 cd07672 F-BAR_PSTPIP2 The F-BA 64.6 71 0.0015 32.7 10.7 82 288-376 101-187 (240)
323 KOG0244 Kinesin-like protein [ 64.4 1.3E+02 0.0028 36.9 14.0 51 385-442 363-413 (913)
324 PRK13729 conjugal transfer pil 64.3 40 0.00086 38.3 9.5 40 411-450 81-120 (475)
325 KOG1899 LAR transmembrane tyro 64.0 2E+02 0.0043 34.5 14.9 26 318-343 121-146 (861)
326 KOG1103 Predicted coiled-coil 63.5 2.6E+02 0.0056 31.6 21.3 45 536-580 243-290 (561)
327 COG3096 MukB Uncharacterized p 63.0 3.7E+02 0.0081 33.2 17.2 27 330-356 384-410 (1480)
328 PF03962 Mnd1: Mnd1 family; I 62.9 38 0.00082 33.5 8.1 24 428-451 104-127 (188)
329 PF09486 HrpB7: Bacterial type 62.7 1.6E+02 0.0036 29.0 17.7 17 433-449 120-136 (158)
330 PF15294 Leu_zip: Leucine zipp 62.6 2.2E+02 0.0049 30.5 14.6 150 289-452 127-278 (278)
331 TIGR02338 gimC_beta prefoldin, 62.6 1.2E+02 0.0026 27.3 11.2 50 325-374 6-58 (110)
332 KOG0946 ER-Golgi vesicle-tethe 62.2 3.8E+02 0.0083 33.1 19.6 24 560-583 905-928 (970)
333 PF09787 Golgin_A5: Golgin sub 62.1 2.7E+02 0.0059 31.3 20.4 22 538-559 395-416 (511)
334 COG1340 Uncharacterized archae 62.0 2.4E+02 0.0051 30.6 20.0 59 339-397 168-226 (294)
335 PF06818 Fez1: Fez1; InterPro 62.0 2E+02 0.0043 29.7 16.3 91 285-375 8-105 (202)
336 PF10046 BLOC1_2: Biogenesis o 61.7 1.2E+02 0.0026 27.1 11.6 45 307-351 13-57 (99)
337 PF13870 DUF4201: Domain of un 61.7 1.5E+02 0.0033 28.3 17.2 128 318-452 45-177 (177)
338 PF14739 DUF4472: Domain of un 61.7 43 0.00093 31.4 7.7 64 383-453 26-89 (108)
339 KOG4438 Centromere-associated 61.6 1.8E+02 0.004 33.0 13.8 75 375-449 163-238 (446)
340 PF06818 Fez1: Fez1; InterPro 61.6 2E+02 0.0043 29.6 14.2 99 326-424 35-149 (202)
341 PF12325 TMF_TATA_bd: TATA ele 61.6 1.5E+02 0.0032 28.0 13.4 94 287-391 16-109 (120)
342 cd07679 F-BAR_PACSIN2 The F-BA 61.4 2.2E+02 0.0048 30.1 18.5 92 339-440 115-217 (258)
343 PF04642 DUF601: Protein of un 61.2 55 0.0012 35.0 9.3 86 360-452 196-296 (311)
344 PF05529 Bap31: B-cell recepto 61.0 48 0.001 32.1 8.3 80 362-441 98-189 (192)
345 KOG4005 Transcription factor X 60.9 60 0.0013 34.5 9.4 82 347-446 63-144 (292)
346 PRK05689 fliJ flagellar biosyn 60.9 1.4E+02 0.003 27.5 13.8 94 291-384 6-112 (147)
347 PF05529 Bap31: B-cell recepto 60.8 54 0.0012 31.7 8.7 25 339-363 157-181 (192)
348 KOG4593 Mitotic checkpoint pro 60.8 3.7E+02 0.008 32.4 17.9 104 317-424 404-514 (716)
349 cd07648 F-BAR_FCHO The F-BAR ( 60.5 1.9E+02 0.0042 29.1 16.9 29 305-333 57-85 (261)
350 PRK10698 phage shock protein P 60.3 2E+02 0.0043 29.2 15.7 51 408-458 101-151 (222)
351 TIGR00618 sbcc exonuclease Sbc 60.2 3.9E+02 0.0084 32.5 21.4 165 287-453 176-347 (1042)
352 cd07655 F-BAR_PACSIN The F-BAR 60.1 2.1E+02 0.0045 29.3 13.2 90 289-378 114-203 (258)
353 PRK07720 fliJ flagellar biosyn 59.9 1.5E+02 0.0032 27.5 17.4 51 383-440 69-119 (146)
354 PF15450 DUF4631: Domain of un 59.9 3.4E+02 0.0073 31.7 20.1 151 296-455 234-422 (531)
355 TIGR01010 BexC_CtrB_KpsE polys 59.5 2.3E+02 0.0051 29.8 17.7 42 358-399 215-256 (362)
356 PF06148 COG2: COG (conserved 59.4 9 0.00019 35.0 3.0 81 332-425 22-102 (133)
357 PF05384 DegS: Sensor protein 58.9 1.9E+02 0.0041 28.5 12.3 94 360-453 23-117 (159)
358 PF15254 CCDC14: Coiled-coil d 58.8 3E+02 0.0064 33.7 15.4 137 317-453 389-555 (861)
359 PRK12704 phosphodiesterase; Pr 58.8 3.3E+02 0.0071 31.2 18.4 12 443-454 191-202 (520)
360 PF09728 Taxilin: Myosin-like 58.7 2.5E+02 0.0055 29.9 21.0 106 337-442 203-308 (309)
361 PF14362 DUF4407: Domain of un 58.4 2.1E+02 0.0046 29.4 12.9 9 406-414 196-204 (301)
362 PF14988 DUF4515: Domain of un 58.3 2.1E+02 0.0046 28.9 21.9 71 311-381 36-109 (206)
363 PF04102 SlyX: SlyX; InterPro 57.9 39 0.00084 28.5 6.3 23 432-454 30-52 (69)
364 KOG3096 Spliceosome-associated 57.8 2.5E+02 0.0054 29.5 15.4 109 284-409 89-201 (225)
365 TIGR03752 conj_TIGR03752 integ 57.7 70 0.0015 36.4 9.9 17 425-441 121-137 (472)
366 KOG3647 Predicted coiled-coil 57.6 1.7E+02 0.0037 31.8 12.2 64 384-447 118-181 (338)
367 PF04871 Uso1_p115_C: Uso1 / p 57.6 1.8E+02 0.0038 27.7 14.4 31 425-455 82-112 (136)
368 PF13747 DUF4164: Domain of un 57.4 60 0.0013 28.9 7.7 44 538-581 39-82 (89)
369 PRK11578 macrolide transporter 57.3 1E+02 0.0022 32.3 10.6 8 452-459 187-194 (370)
370 PRK14154 heat shock protein Gr 57.1 2.1E+02 0.0046 29.4 12.4 51 338-388 54-104 (208)
371 TIGR00634 recN DNA repair prot 57.0 3.3E+02 0.0073 30.8 16.5 46 329-374 266-311 (563)
372 PRK04325 hypothetical protein; 56.9 97 0.0021 26.8 8.6 49 386-455 10-58 (74)
373 PF10805 DUF2730: Protein of u 56.7 1.2E+02 0.0026 27.6 9.6 63 333-395 32-96 (106)
374 KOG0247 Kinesin-like protein [ 56.7 2.8E+02 0.0061 33.6 14.8 61 323-395 535-595 (809)
375 PF08172 CASP_C: CASP C termin 56.5 67 0.0015 33.3 9.0 42 413-454 86-134 (248)
376 KOG4403 Cell surface glycoprot 56.4 2.4E+02 0.0051 32.6 13.5 21 404-424 359-379 (575)
377 cd07654 F-BAR_FCHSD The F-BAR 55.9 2.2E+02 0.0047 29.8 12.6 66 317-382 79-156 (264)
378 TIGR02449 conserved hypothetic 55.9 74 0.0016 27.5 7.6 35 418-452 26-60 (65)
379 TIGR02473 flagell_FliJ flagell 55.4 1.6E+02 0.0034 26.4 17.2 36 343-378 68-103 (141)
380 KOG0993 Rab5 GTPase effector R 54.5 1.9E+02 0.0042 33.0 12.4 124 327-450 22-171 (542)
381 PF05700 BCAS2: Breast carcino 54.4 1.5E+02 0.0032 29.8 10.8 26 378-403 189-214 (221)
382 PF05335 DUF745: Protein of un 54.3 2.5E+02 0.0053 28.4 15.4 88 337-424 61-148 (188)
383 PF05929 Phage_GPO: Phage caps 54.3 54 0.0012 34.8 8.0 62 285-346 190-252 (276)
384 KOG0993 Rab5 GTPase effector R 54.1 4E+02 0.0086 30.7 18.0 57 368-424 424-480 (542)
385 KOG4250 TANK binding protein k 54.1 4.8E+02 0.01 31.6 16.8 165 273-455 400-574 (732)
386 PRK02793 phi X174 lysis protei 54.0 1E+02 0.0022 26.5 8.3 24 433-456 35-58 (72)
387 PF05266 DUF724: Protein of un 53.6 2.5E+02 0.0054 28.2 13.0 43 381-423 127-169 (190)
388 KOG0288 WD40 repeat protein Ti 53.5 4E+02 0.0086 30.6 15.9 11 291-301 10-20 (459)
389 COG4238 Murein lipoprotein [Ce 53.1 58 0.0013 29.2 6.7 49 328-383 24-72 (78)
390 PLN03229 acetyl-coenzyme A car 52.6 3.6E+02 0.0078 32.7 14.8 58 301-358 485-550 (762)
391 PRK14143 heat shock protein Gr 52.2 2.9E+02 0.0063 28.8 12.7 47 340-386 71-117 (238)
392 COG4717 Uncharacterized conser 52.0 5.6E+02 0.012 31.9 19.8 169 278-453 613-800 (984)
393 PF05791 Bacillus_HBL: Bacillu 51.8 72 0.0016 31.2 7.9 8 275-282 87-94 (184)
394 PRK00888 ftsB cell division pr 51.4 50 0.0011 30.0 6.3 34 338-371 29-62 (105)
395 KOG2008 BTK-associated SH3-dom 51.4 3.9E+02 0.0085 29.9 18.6 82 316-397 77-167 (426)
396 PF11577 NEMO: NF-kappa-B esse 50.5 1.6E+02 0.0035 25.6 8.8 60 306-365 8-67 (68)
397 PF05010 TACC: Transforming ac 50.4 3E+02 0.0065 28.2 20.0 115 319-439 87-201 (207)
398 PF08657 DASH_Spc34: DASH comp 49.9 95 0.0021 32.5 8.9 39 325-363 176-214 (259)
399 PF14362 DUF4407: Domain of un 49.7 3.1E+02 0.0067 28.2 15.8 15 336-350 142-156 (301)
400 PF05400 FliT: Flagellar prote 49.4 1.3E+02 0.0029 24.4 8.0 51 538-588 11-73 (84)
401 PRK13428 F0F1 ATP synthase sub 49.2 3.6E+02 0.0078 30.0 13.6 15 616-630 387-401 (445)
402 PRK15396 murein lipoprotein; P 48.9 71 0.0015 28.3 6.6 48 407-454 26-73 (78)
403 PRK10869 recombination and rep 48.6 4.7E+02 0.01 29.9 20.3 37 388-424 299-335 (553)
404 PF12329 TMF_DNA_bd: TATA elem 48.6 1.8E+02 0.0039 25.1 9.4 65 306-370 3-67 (74)
405 KOG4637 Adaptor for phosphoino 48.5 4.6E+02 0.01 29.9 14.1 126 233-395 44-186 (464)
406 PF13949 ALIX_LYPXL_bnd: ALIX 48.5 3E+02 0.0065 27.7 13.0 78 272-352 10-93 (296)
407 PRK10803 tol-pal system protei 48.4 74 0.0016 32.8 7.8 61 387-454 42-102 (263)
408 KOG2307 Low density lipoprotei 48.3 1.1E+02 0.0023 36.2 9.6 119 344-475 47-167 (705)
409 KOG4460 Nuclear pore complex, 48.2 5.5E+02 0.012 30.7 15.5 162 275-449 569-731 (741)
410 TIGR02971 heterocyst_DevB ABC 47.7 3.3E+02 0.0071 27.9 15.3 29 340-368 94-122 (327)
411 PF15066 CAGE1: Cancer-associa 47.7 5.1E+02 0.011 30.2 21.9 15 441-455 510-524 (527)
412 TIGR01069 mutS2 MutS2 family p 47.7 4.3E+02 0.0093 31.6 14.7 52 310-361 499-550 (771)
413 PF03961 DUF342: Protein of un 47.7 93 0.002 34.1 8.8 75 378-453 334-408 (451)
414 PF06120 Phage_HK97_TLTM: Tail 47.5 4E+02 0.0087 28.9 16.5 62 293-354 40-106 (301)
415 PRK09793 methyl-accepting prot 47.3 4.4E+02 0.0095 29.3 16.3 69 285-353 241-313 (533)
416 PF14966 DNA_repr_REX1B: DNA r 47.0 2E+02 0.0043 26.1 9.3 29 367-395 36-64 (97)
417 PRK14140 heat shock protein Gr 46.8 1E+02 0.0022 31.2 8.2 50 337-386 38-87 (191)
418 PF13874 Nup54: Nucleoporin co 46.6 1.1E+02 0.0025 28.7 8.1 22 328-349 36-57 (141)
419 TIGR03545 conserved hypothetic 46.5 1.2E+02 0.0026 34.9 9.8 42 336-378 164-205 (555)
420 PRK14148 heat shock protein Gr 46.2 1.4E+02 0.003 30.2 9.1 49 338-386 42-90 (195)
421 PF06785 UPF0242: Uncharacteri 46.1 1.4E+02 0.003 33.3 9.6 85 289-378 150-241 (401)
422 PF05266 DUF724: Protein of un 46.1 3.3E+02 0.0071 27.4 13.3 60 288-351 87-146 (190)
423 PF02403 Seryl_tRNA_N: Seryl-t 45.9 1.1E+02 0.0023 27.0 7.4 29 295-323 30-58 (108)
424 KOG1962 B-cell receptor-associ 45.8 2.4E+02 0.0052 29.3 10.8 48 321-368 150-197 (216)
425 KOG0963 Transcription factor/C 45.6 6E+02 0.013 30.4 22.5 168 285-452 143-338 (629)
426 PRK15136 multidrug efflux syst 45.2 4.3E+02 0.0092 28.5 14.0 7 308-314 99-105 (390)
427 PRK00736 hypothetical protein; 45.0 1.9E+02 0.0042 24.6 8.5 48 387-455 7-54 (68)
428 PF10481 CENP-F_N: Cenp-F N-te 44.9 4.5E+02 0.0098 28.7 15.1 24 559-582 278-301 (307)
429 PF09766 FimP: Fms-interacting 44.7 3.8E+02 0.0083 29.0 12.7 22 332-353 29-50 (355)
430 PF05837 CENP-H: Centromere pr 44.6 2.4E+02 0.0053 25.6 9.9 61 363-424 16-76 (106)
431 PF02994 Transposase_22: L1 tr 44.6 52 0.0011 35.6 6.3 44 410-453 141-184 (370)
432 PF13805 Pil1: Eisosome compon 44.5 4.3E+02 0.0093 28.4 22.2 161 287-456 54-226 (271)
433 PF06156 DUF972: Protein of un 44.4 1.2E+02 0.0026 28.0 7.7 47 287-333 8-54 (107)
434 PF10475 DUF2450: Protein of u 44.3 3.8E+02 0.0083 27.7 14.9 89 363-458 52-142 (291)
435 KOG1937 Uncharacterized conser 44.1 5.7E+02 0.012 29.7 17.7 120 286-413 254-380 (521)
436 PRK00295 hypothetical protein; 44.0 1.9E+02 0.0041 24.6 8.3 22 433-454 32-53 (68)
437 PF02841 GBP_C: Guanylate-bind 43.9 3.9E+02 0.0085 27.7 13.5 14 321-334 154-167 (297)
438 PF10212 TTKRSYEDQ: Predicted 43.7 4.3E+02 0.0094 30.8 13.3 28 416-443 483-510 (518)
439 cd07664 BAR_SNX2 The Bin/Amphi 43.6 3.9E+02 0.0084 27.6 23.0 104 323-431 74-184 (234)
440 cd07657 F-BAR_Fes_Fer The F-BA 43.5 3.8E+02 0.0083 27.5 17.9 49 337-385 106-154 (237)
441 PF06008 Laminin_I: Laminin Do 43.4 3.7E+02 0.0081 27.3 17.1 29 550-578 218-246 (264)
442 COG1293 Predicted RNA-binding 43.4 3.8E+02 0.0082 30.9 13.0 141 289-430 260-408 (564)
443 KOG4572 Predicted DNA-binding 43.3 5.8E+02 0.013 31.9 14.6 58 536-593 1213-1275(1424)
444 TIGR02449 conserved hypothetic 43.3 1.9E+02 0.0041 25.0 8.2 45 339-383 10-54 (65)
445 PF00015 MCPsignal: Methyl-acc 42.6 2.9E+02 0.0062 25.8 12.7 17 285-301 73-89 (213)
446 cd09234 V_HD-PTP_like Protein- 42.6 4.4E+02 0.0096 28.0 20.4 226 286-586 71-299 (337)
447 PF09304 Cortex-I_coil: Cortex 42.6 3E+02 0.0066 26.0 13.6 18 432-449 84-101 (107)
448 COG4372 Uncharacterized protei 42.5 5.8E+02 0.013 29.3 22.8 45 288-332 117-161 (499)
449 PRK09973 putative outer membra 41.9 83 0.0018 28.5 6.1 46 407-452 25-70 (85)
450 cd07665 BAR_SNX1 The Bin/Amphi 41.9 4.2E+02 0.0091 27.5 20.8 155 284-443 19-200 (234)
451 PF03357 Snf7: Snf7; InterPro 41.8 2.8E+02 0.006 25.4 10.4 66 340-407 5-70 (171)
452 TIGR01541 tape_meas_lam_C phag 41.6 4.9E+02 0.011 28.2 17.1 130 287-453 1-142 (332)
453 PF07989 Microtub_assoc: Micro 41.6 2.3E+02 0.0049 24.8 8.5 17 291-307 4-20 (75)
454 PRK00409 recombination and DNA 41.4 7E+02 0.015 29.9 15.1 25 326-350 520-544 (782)
455 PRK10780 periplasmic chaperone 41.3 3.3E+02 0.007 26.1 12.9 43 325-367 32-74 (165)
456 KOG4403 Cell surface glycoprot 41.3 1.3E+02 0.0027 34.6 8.6 16 395-410 312-327 (575)
457 PF04977 DivIC: Septum formati 41.2 1.1E+02 0.0023 25.0 6.2 33 337-369 18-50 (80)
458 PRK04406 hypothetical protein; 40.8 2.2E+02 0.0048 24.8 8.4 24 433-456 38-61 (75)
459 KOG2072 Translation initiation 40.6 8.2E+02 0.018 30.5 18.5 60 290-350 526-585 (988)
460 PRK07720 fliJ flagellar biosyn 40.5 3E+02 0.0065 25.4 13.8 93 292-384 7-112 (146)
461 PF07227 DUF1423: Protein of u 40.4 3.3E+02 0.0073 31.1 11.7 88 318-411 356-445 (446)
462 PRK00846 hypothetical protein; 40.1 2.7E+02 0.0059 24.8 9.0 26 432-457 39-64 (77)
463 PF09728 Taxilin: Myosin-like 39.7 5E+02 0.011 27.8 21.7 69 285-357 20-88 (309)
464 PF06785 UPF0242: Uncharacteri 39.5 6E+02 0.013 28.6 17.3 98 291-388 72-172 (401)
465 PF12709 Kinetocho_Slk19: Cent 39.5 3E+02 0.0065 25.2 10.3 49 391-446 33-82 (87)
466 PF06632 XRCC4: DNA double-str 39.1 4.3E+02 0.0093 29.0 12.0 64 289-352 139-203 (342)
467 KOG1003 Actin filament-coating 39.1 4.7E+02 0.01 27.3 19.2 81 373-453 97-198 (205)
468 PRK11546 zraP zinc resistance 39.1 1.6E+02 0.0035 28.8 8.0 62 337-398 48-109 (143)
469 PRK14160 heat shock protein Gr 38.7 1.6E+02 0.0036 30.2 8.4 49 338-386 63-111 (211)
470 KOG3215 Uncharacterized conser 38.6 4.9E+02 0.011 27.4 12.3 47 400-448 153-204 (222)
471 PF06156 DUF972: Protein of un 38.6 1.7E+02 0.0038 27.0 7.8 53 535-587 5-57 (107)
472 PRK14151 heat shock protein Gr 38.5 4.1E+02 0.009 26.4 11.7 49 338-386 22-70 (176)
473 PF02403 Seryl_tRNA_N: Seryl-t 38.4 2.5E+02 0.0054 24.7 8.5 26 372-397 68-93 (108)
474 KOG1144 Translation initiation 38.3 3.4E+02 0.0075 33.4 11.8 49 411-459 257-307 (1064)
475 PF05278 PEARLI-4: Arabidopsis 38.3 5.4E+02 0.012 27.7 14.9 122 289-418 135-261 (269)
476 COG1566 EmrA Multidrug resista 38.0 5.4E+02 0.012 28.3 12.6 61 395-455 140-204 (352)
477 PF06120 Phage_HK97_TLTM: Tail 38.0 5.6E+02 0.012 27.8 17.4 59 308-368 41-99 (301)
478 KOG4466 Component of histone d 37.8 3.5E+02 0.0077 29.4 10.9 34 418-452 121-154 (291)
479 KOG4302 Microtubule-associated 37.8 5.4E+02 0.012 30.8 13.3 160 290-454 64-253 (660)
480 KOG4196 bZIP transcription fac 37.7 59 0.0013 31.6 4.8 42 340-381 78-119 (135)
481 PRK00888 ftsB cell division pr 37.5 1.5E+02 0.0033 27.0 7.2 40 414-453 35-74 (105)
482 cd07624 BAR_SNX7_30 The Bin/Am 37.4 4.2E+02 0.009 26.2 20.9 41 281-321 8-52 (200)
483 KOG0992 Uncharacterized conser 37.4 7.6E+02 0.016 29.2 15.6 95 288-397 209-307 (613)
484 PF11570 E2R135: Coiled-coil r 37.4 4.1E+02 0.009 26.1 13.1 47 325-371 4-50 (136)
485 PRK14147 heat shock protein Gr 37.2 1.1E+02 0.0023 30.3 6.6 49 338-386 20-68 (172)
486 PF15272 BBP1_C: Spindle pole 37.0 4.9E+02 0.011 26.8 14.7 15 383-397 80-94 (196)
487 TIGR02209 ftsL_broad cell divi 36.9 1.5E+02 0.0033 24.8 6.7 45 337-386 25-69 (85)
488 TIGR01730 RND_mfp RND family e 36.8 2.5E+02 0.0055 27.8 9.3 11 338-348 80-90 (322)
489 PF15188 CCDC-167: Coiled-coil 36.7 84 0.0018 28.4 5.3 20 382-401 2-21 (85)
490 PF14931 IFT20: Intraflagellar 36.6 3.7E+02 0.0081 25.4 13.6 82 340-431 31-112 (120)
491 PRK10869 recombination and rep 36.5 7E+02 0.015 28.6 15.6 12 74-85 24-35 (553)
492 cd00632 Prefoldin_beta Prefold 36.5 3.1E+02 0.0067 24.4 11.5 21 355-375 21-41 (105)
493 cd07681 F-BAR_PACSIN3 The F-BA 36.5 5.4E+02 0.012 27.2 17.5 126 305-440 61-217 (258)
494 cd07671 F-BAR_PSTPIP1 The F-BA 36.4 4.9E+02 0.011 26.8 11.4 100 275-374 73-184 (242)
495 PRK09343 prefoldin subunit bet 36.3 3.5E+02 0.0077 25.0 11.9 95 316-413 1-113 (121)
496 COG3206 GumC Uncharacterized p 36.2 6.1E+02 0.013 27.8 18.9 190 277-470 224-427 (458)
497 PF11855 DUF3375: Protein of u 36.1 6.8E+02 0.015 28.2 18.1 253 274-542 131-414 (478)
498 PRK13874 conjugal transfer pro 35.9 5.2E+02 0.011 26.8 12.8 103 275-379 111-226 (230)
499 PF00170 bZIP_1: bZIP transcri 35.9 1.2E+02 0.0027 24.6 5.8 40 285-324 24-63 (64)
500 PF10828 DUF2570: Protein of u 35.8 3.2E+02 0.007 24.8 9.0 58 296-353 27-84 (110)
No 1
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.20 E-value=0.0024 Score=72.16 Aligned_cols=163 Identities=17% Similarity=0.313 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006482 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 366 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 366 (643)
.+...|++.++++..+--.+...+.....-.+++..+-..+..........+..++.++++++.++......++.+..+.
T Consensus 677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~ 756 (1179)
T TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444444444444444444444444444444444444444555444444444444444444444
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHH
Q 006482 367 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 446 (643)
Q Consensus 367 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklL 446 (643)
..+..+.....++...+-.++-.|++++..++...-.++.++..+..++..++.++..+..+...++..+..++.+.+.+
T Consensus 757 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l 836 (1179)
T TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443333222223334444444444444444444444444444444444444444
Q ss_pred HHH
Q 006482 447 QSK 449 (643)
Q Consensus 447 qsk 449 (643)
+.+
T Consensus 837 ~~~ 839 (1179)
T TIGR02168 837 ERR 839 (1179)
T ss_pred HHH
Confidence 433
No 2
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.09 E-value=0.0056 Score=69.23 Aligned_cols=102 Identities=17% Similarity=0.229 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006482 290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 369 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaA 369 (643)
..|++.|+++..+.-.+...++..++-.+.+..+-..+.....+....+..++.++..++.++......++.+..|...+
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~ 752 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444433333344444444444444433333333333333333
Q ss_pred hhhhhhHHHHHHHHHHHHHhHH
Q 006482 370 RLECNAADERAKILASEVIGLE 391 (643)
Q Consensus 370 rle~~aA~ERak~LAaEVV~LE 391 (643)
..++....+.-..+..++..++
T Consensus 753 ~~~~~~~~~~~~~~~~~l~~~~ 774 (1179)
T TIGR02168 753 SKELTELEAEIEELEERLEEAE 774 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.00 E-value=0.02 Score=65.46 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006482 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 333 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNq 333 (643)
.++..++..+++++.+.-.+...++....-.+.+-.+-..+...++.
T Consensus 237 ~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 283 (1164)
T TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD 283 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666666666666666666666556666555556555555
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.95 E-value=0.0021 Score=73.13 Aligned_cols=11 Identities=27% Similarity=0.229 Sum_probs=6.0
Q ss_pred CCccccCCCCc
Q 006482 74 SNAIALGNGHS 84 (643)
Q Consensus 74 sn~~~~~~g~s 84 (643)
-|+|.-.||+|
T Consensus 25 ~~~i~G~NGsG 35 (1164)
T TIGR02169 25 FTVISGPNGSG 35 (1164)
T ss_pred eEEEECCCCCC
Confidence 35555555555
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=97.91 E-value=0.018 Score=65.35 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006482 288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY-------NQQRSVVNQLKSEMEKLQEEIKVQLVELE 360 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~y-------NqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le 360 (643)
++..+++.|.++..+.-.+...+.......+.|-.+.+.|.... ........+|..+.+.++.++......+.
T Consensus 259 ~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~ 338 (880)
T PRK02224 259 EIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQ 338 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444445555554444444444444433322 22222334455555555555544444443
Q ss_pred hhH
Q 006482 361 SFR 363 (643)
Q Consensus 361 ~l~ 363 (643)
.+.
T Consensus 339 ~~~ 341 (880)
T PRK02224 339 AHN 341 (880)
T ss_pred HHH
Confidence 333
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.65 E-value=0.087 Score=62.83 Aligned_cols=236 Identities=22% Similarity=0.318 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006482 288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL-------TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 360 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaL-------t~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le 360 (643)
+...|+.+|+++......+...+.....-...+-..-+.+ ..++..-...+..++.+.++++..+...-..++
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 747 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE 747 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777666666655555544444444443333 344444444444444444444444444444444
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHH-------HhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhH
Q 006482 361 SFRNEYANVRLECNAADERAKILASEVIGLEEKALR-------LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQ 433 (643)
Q Consensus 361 ~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~-------LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~ 433 (643)
.+..+++..+.+.....+.-..+-..+..|++++.. +...--.++.++..+..++...+.++...+..+..+.
T Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1163)
T COG1196 748 ELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLE 827 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333333333333333333333333332 3222223334444444444444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCcccccccccccccccccCccccCCCCCcccCCCCCCCCCCCCCCCCcc
Q 006482 434 STIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPES 513 (643)
Q Consensus 434 s~i~aLQEEKklLqskLRka~~~gk~~~~~k~~~~~kDASTSTdDLai~d~~~~sSn~e~~~s~s~~~~~~~~~P~~P~~ 513 (643)
..|+.++++...++.++......-.... ...+.+
T Consensus 828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~~------------~~~~~~---------------------------------- 861 (1163)
T COG1196 828 QEIEELEEEIEELEEKLDELEEELEELE------------KELEEL---------------------------------- 861 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH------------HHHHHH----------------------------------
Confidence 5555555555555555443322111000 000000
Q ss_pred ccccccCccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHh
Q 006482 514 GRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQ 578 (643)
Q Consensus 514 G~~~l~~~~vsIp~DQlRmI~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~q 578 (643)
-.--......+..+++-|.++..+++.+-..|+.......+++.....+..++...
T Consensus 862 ---------~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l 917 (1163)
T COG1196 862 ---------KEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEEL 917 (1163)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011223356677777777777777777777777777777777777777666643
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=97.56 E-value=0.014 Score=66.20 Aligned_cols=119 Identities=19% Similarity=0.251 Sum_probs=65.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHH
Q 006482 327 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 406 (643)
Q Consensus 327 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKler 406 (643)
+.+..+.....+.......+.|++++..-...+.....+++.+..+..++.++...+..++-.|+.+.-++. .
T Consensus 521 l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~------ 593 (880)
T PRK02224 521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-R------ 593 (880)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-H------
Confidence 333344444444555555555666655555555555566666667777777777777777777777766664 3
Q ss_pred HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482 407 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 407 ele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
+..+..++...+..+..++.++..+....+.++++..-+..++...
T Consensus 594 -~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 594 -IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444445555555555555443
No 8
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.54 E-value=0.042 Score=68.87 Aligned_cols=238 Identities=23% Similarity=0.322 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 006482 310 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK-------VQLVELESFRNEYANVRLECNAADERAKI 382 (643)
Q Consensus 310 L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~-------aQ~~~le~l~aErdaArle~~aA~ERak~ 382 (643)
++.+.++-+.|..+...+-..+..-...+.++++....|+.+.. .-...++.+-..|+.++++.+++..+-+.
T Consensus 889 ~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~ 968 (1930)
T KOG0161|consen 889 LAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKN 968 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666655554444433333 33334444455566788888888888888
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhHHHHh----hhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH----HHHHH---HHHHHH
Q 006482 383 LASEVIGLEEKALRLRSNELKLERQLE----NSQSEISSYKKKISSLEKERQDFQSTIEALQ----EEKKM---MQSKLR 451 (643)
Q Consensus 383 LAaEVV~LEEk~l~LRS~eLKlerele----~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ----EEKkl---LqskLR 451 (643)
|-.|+..|++.+-+| .|..|+++ .+...+-..+.++..+.|-...|...++-|+ +|++. +....|
T Consensus 969 l~~e~~~~~e~~~kL----~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~r 1044 (1930)
T KOG0161|consen 969 LEEEINSLDENISKL----SKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKR 1044 (1930)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887755 33333333 3556666677777777777777776666554 34433 333344
Q ss_pred hhhCCCCCcCCCCCcccccccccccccccccCccccCCCCCcccCCCCCCCCCCCCCCCCccccccccCccccchhhHHH
Q 006482 452 KASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMR 531 (643)
Q Consensus 452 ka~~~gk~~~~~k~~~~~kDASTSTdDLai~d~~~~sSn~e~~~s~s~~~~~~~~~P~~P~~G~~~l~~~~vsIp~DQlR 531 (643)
+.-+.-+... .+ -.+.-..-++|.. . . ... +..+ |++ -.-.+|.-+
T Consensus 1045 kle~el~~~~---e~--~~~~~~~~~el~~----~-----l--~kk---e~El---------~~l------~~k~e~e~~ 1090 (1930)
T KOG0161|consen 1045 KLEGELKDLQ---ES--IEELKKQKEELDN----Q-----L--KKK---ESEL---------SQL------QSKLEDEQA 1090 (1930)
T ss_pred HHHHHHHHhh---hH--HHHHHHHHHHHHH----H-----H--HHH---HHHH---------HHH------HHHhhHHHH
Confidence 4433221100 00 0001111111100 0 0 000 0000 111 134456667
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHH
Q 006482 532 MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELL 585 (643)
Q Consensus 532 mI~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELl 585 (643)
++..+--.|.||+....+|-.-|..+....+++.....||.+.||+.+.+||.+
T Consensus 1091 ~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1091 EVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888888888888888888888888888888888888877
No 9
>PRK11637 AmiB activator; Provisional
Probab=97.49 E-value=0.041 Score=58.49 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=54.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006482 284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 362 (643)
Q Consensus 284 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 362 (643)
...++...|++-|+++-.+.-.++..+.....-.+.|..+-..+...+|+....+.+++.++++++.+|......++..
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777777776666666667777777777777777777777777766666666655554444
No 10
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.46 E-value=0.25 Score=57.24 Aligned_cols=172 Identities=22% Similarity=0.300 Sum_probs=123.3
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH-------------
Q 006482 278 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE------------- 344 (643)
Q Consensus 278 ~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~------------- 344 (643)
-|-+|--.-.++..|+|-+.-+-.||-+|...|+.+|.-.+.=..+-+..+++.|..+..|++|+..
T Consensus 256 ~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~ 335 (717)
T PF09730_consen 256 SDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSE 335 (717)
T ss_pred chhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 4667777788999999999999999999999999999988888888888888888888888888871
Q ss_pred ------------------HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHH
Q 006482 345 ------------------MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 406 (643)
Q Consensus 345 ------------------mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKler 406 (643)
++-|+....+-..++..++.|..+.+..+....++.+. +-..++.++..|......+++
T Consensus 336 ~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~---ek~~~~~e~q~L~ekl~~lek 412 (717)
T PF09730_consen 336 KERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQ---EKDRLESEVQNLKEKLMSLEK 412 (717)
T ss_pred cccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 24455555555566666777777777666666665543 222333444444444444466
Q ss_pred HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482 407 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 452 (643)
Q Consensus 407 ele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRk 452 (643)
....-...+..+++.+..+.+-.++.+..+.+.|+|-..+-.-|=+
T Consensus 413 ~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAq 458 (717)
T PF09730_consen 413 SSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQ 458 (717)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566777888888888888888888888888777555444433
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.40 E-value=0.031 Score=66.53 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006482 286 NEDFAALEQHIEDLTQEKFALQRSLEASR 314 (643)
Q Consensus 286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~ 314 (643)
...+..++.+|.+++..--.+.+.++...
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1163)
T COG1196 694 KNELRSLEDLLEELRRQLEELERQLEELK 722 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888766666655544433
No 12
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.25 E-value=0.063 Score=60.36 Aligned_cols=97 Identities=24% Similarity=0.289 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 006482 292 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 371 (643)
Q Consensus 292 LqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArl 371 (643)
||..|++.-+||-.|+.....-.+-+++|-.+++.|-. .+...+.++++|+++.+.-....+.+..|++-...
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~-------eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~ 213 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEA-------ELEQEEEEMEQLKQQQKELTESSEELKEERESLKE 213 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999899999887776666655555555555544 45555556666666655555667788899999888
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHH
Q 006482 372 ECNAADERAKILASEVIGLEEKAL 395 (643)
Q Consensus 372 e~~aA~ERak~LAaEVV~LEEk~l 395 (643)
...++..|.+.|-.++..|..+..
T Consensus 214 q~~e~~~ri~~LEedi~~l~qk~~ 237 (546)
T PF07888_consen 214 QLAEARQRIRELEEDIKTLTQKEK 237 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999888874
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.22 E-value=0.075 Score=64.06 Aligned_cols=166 Identities=14% Similarity=0.231 Sum_probs=103.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHH---HHhhHHHHHHHHHHHHHHHHHHHHHH--
Q 006482 286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL---TDSY---NQQRSVVNQLKSEMEKLQEEIKVQLV-- 357 (643)
Q Consensus 286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaL---t~~y---NqQ~~~v~qLk~~mE~Lq~Ei~aQ~~-- 357 (643)
..++..|++.|.+++.+.-.+...|+......+.+..+-..+ .... .+....+..++.++++|..++..+..
T Consensus 743 ~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~ 822 (1311)
T TIGR00606 743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDR 822 (1311)
T ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 356777888888888887777777777777777776666433 2222 44445566677777776665554332
Q ss_pred -------HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHH----------HHhhhHHHHHHHHH
Q 006482 358 -------ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER----------QLENSQSEISSYKK 420 (643)
Q Consensus 358 -------~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKler----------ele~l~~E~~s~~~ 420 (643)
.+..+..+++..+.+.....+....+-.++-.|++++..++...+++.. +++.+..++..++.
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~ 902 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR 902 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334445555555555556777778888888887777777766665543 44445555566666
Q ss_pred HhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 006482 421 KISSLEKERQDFQSTIEALQEEKKMMQSKLR 451 (643)
Q Consensus 421 qlsslekeR~~l~s~i~aLQEEKklLqskLR 451 (643)
.+..++++-..+...++.++.++..+..+.+
T Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1311)
T TIGR00606 903 EIKDAKEQDSPLETFLEKDQQEKEELISSKE 933 (1311)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666655554444333
No 14
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.20 E-value=0.032 Score=57.88 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH
Q 006482 294 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVV 338 (643)
Q Consensus 294 qhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v 338 (643)
.|++.|-.++-.|...+++...+...|.....+|....+.-...+
T Consensus 156 ~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~ 200 (325)
T PF08317_consen 156 ENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLV 200 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444433333
No 15
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.18 E-value=0.75 Score=53.21 Aligned_cols=168 Identities=21% Similarity=0.274 Sum_probs=82.9
Q ss_pred CCchhhHHHHHHHHHHHHHHH---HHHHHHHHHH-----------HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 006482 283 TKHNEDFAALEQHIEDLTQEK---FALQRSLEAS-----------RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 348 (643)
Q Consensus 283 ~~~~~~faaLqqhIeDLT~EK---faLqR~L~~s-----------~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L 348 (643)
....+....||+-|+-|-.|= ..+...|..+ +--.++|-.||+.|-.+++.....-.+-|.-|..|
T Consensus 414 ~~~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~L 493 (697)
T PF09726_consen 414 NSEPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQL 493 (697)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888777664441 1111122111 22245577788888888877666555555555554
Q ss_pred HHHHHH---HHHHhh-hhHHHHHHHhhhhh-hHH----------HHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHH
Q 006482 349 QEEIKV---QLVELE-SFRNEYANVRLECN-AAD----------ERAKILASEVIGLEEKALRLRSNELKLERQLENSQS 413 (643)
Q Consensus 349 q~Ei~a---Q~~~le-~l~aErdaArle~~-aA~----------ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~ 413 (643)
++.++. ++..+| .|.+||.+-+.+.. +|. |-+-.+-.-+-.||.++.+||.+.-..|.++..+..
T Consensus 494 EkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~ 573 (697)
T PF09726_consen 494 EKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELES 573 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443332 223332 33555533222111 110 111122223344555555555433333333444444
Q ss_pred HHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006482 414 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 450 (643)
Q Consensus 414 E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskL 450 (643)
|+..++.....-++|-..|.+.+.+|||+..+|..-|
T Consensus 574 ~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 574 ELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444322235666777788888888876665443
No 16
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.18 E-value=0.061 Score=64.12 Aligned_cols=136 Identities=16% Similarity=0.257 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 006482 311 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEK-------LQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 383 (643)
Q Consensus 311 ~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~-------Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L 383 (643)
...++-.+..-..++++..+++.--.++++++++.+. +.+.++..+.+...++.++..+.....+...+-..|
T Consensus 298 ~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l 377 (1074)
T KOG0250|consen 298 DTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRL 377 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556666666666666666666555444 444444455555556667777777777777778888
Q ss_pred HHHHHhHHHHH-HHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHH
Q 006482 384 ASEVIGLEEKA-LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 446 (643)
Q Consensus 384 AaEVV~LEEk~-l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklL 446 (643)
-..|..++++. ..+-+.-.+.+.+++.|..|++.++-++.+|..+.+++..-+...+||+-..
T Consensus 378 ~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i 441 (1074)
T KOG0250|consen 378 EKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI 441 (1074)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 88888888887 6666777788888899999999999999999999999888888888888443
No 17
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.10 E-value=0.082 Score=59.49 Aligned_cols=62 Identities=24% Similarity=0.351 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006482 290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 351 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 351 (643)
..|++-...|-++.-.|++.|..+++-++.|..++..++...-........|+.+.+.+...
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~r 221 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQR 221 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666777888888888888888888888776555444444444444444333
No 18
>PRK11637 AmiB activator; Provisional
Probab=97.05 E-value=0.18 Score=53.80 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006482 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 362 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 362 (643)
.++..+++-|.++..++-.++..|....+=.+.+..+-..+....+.....+.+++.++++++.+|..+...+...
T Consensus 54 ~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 54 QDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777766666666555555566666666666666666666666666666666655554433
No 19
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.02 E-value=0.14 Score=55.11 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006482 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSE----SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 353 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~e----sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 353 (643)
+.+..+++.|+.+..+.-.++-.++..++..+ .+......+...|+......++++.++++++.+|.
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~ 244 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELL 244 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555554444443322222 22233344444455555555555555555555443
No 20
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.97 E-value=0.051 Score=68.15 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH--------------HHHHHHHHHH
Q 006482 293 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL--------------QEEIKVQLVE 358 (643)
Q Consensus 293 qqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L--------------q~Ei~aQ~~~ 358 (643)
.|+++++-++|--|+.-|+..++..+-+...+..|-...|+-.+.+..+..++++. ..-+.--.-.
T Consensus 1371 ~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~ 1450 (1930)
T KOG0161|consen 1371 LQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKK 1450 (1930)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999998666655555555444 2333333333
Q ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHH
Q 006482 359 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 438 (643)
Q Consensus 359 le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~a 438 (643)
.+.+..|+|+|+.+..+.....+.+.-.+-.+=+.+-++ +++-..+..++..+..++..+.|..+.|+....+
T Consensus 1451 ~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l-------~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~ 1523 (1930)
T KOG0161|consen 1451 LEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEEL-------RRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRR 1523 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777776666666666655554444433333 4555567777777777777777777777777788
Q ss_pred HHHHHHHHHHHHHhhhC
Q 006482 439 LQEEKKMMQSKLRKASG 455 (643)
Q Consensus 439 LQEEKklLqskLRka~~ 455 (643)
+..||.-||.+|-.+-+
T Consensus 1524 le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1524 LEQEKEELQAALEELEA 1540 (1930)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88887777777766644
No 21
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.95 E-value=0.2 Score=53.86 Aligned_cols=160 Identities=17% Similarity=0.265 Sum_probs=87.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006482 284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRA----LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 359 (643)
Q Consensus 284 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~----l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l 359 (643)
.-..+...|+..|+.+..+--.+++.+...++ ..+.|-.+-+.+...+++-..++..|++++..+..++.....+|
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L 257 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAAL 257 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 34556667777777777776666655555444 34567777778888888888888888777777765544433333
Q ss_pred hhhHHHHHHHhhh----------------hh--------------hHHHHHHHHHHHHHhHHHHHH---HHhhhhhhhHH
Q 006482 360 ESFRNEYANVRLE----------------CN--------------AADERAKILASEVIGLEEKAL---RLRSNELKLER 406 (643)
Q Consensus 360 e~l~aErdaArle----------------~~--------------aA~ERak~LAaEVV~LEEk~l---~LRS~eLKler 406 (643)
..+..++..++.. |. .....-+.|..++-.|++++. +.+..--++++
T Consensus 258 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~ 337 (562)
T PHA02562 258 NKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSK 337 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222221 11 111222333333333333333 11112223345
Q ss_pred HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 006482 407 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 443 (643)
Q Consensus 407 ele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEK 443 (643)
.+..+..++..++..+.++.+++..++..|+.|+++.
T Consensus 338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~ 374 (562)
T PHA02562 338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEF 374 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5555666666666666666666666666666666443
No 22
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.86 E-value=0.096 Score=63.16 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 006482 288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 367 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErd 367 (643)
++..|++-|.++..+|..+...+++- .+|..+-..|...-++++..+..++.+++-|+.++..-...++.++.+..
T Consensus 858 eI~~Lq~ki~el~~~klkl~~~l~~r----~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1311)
T TIGR00606 858 QIQHLKSKTNELKSEKLQIGTNLQRR----QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKE 933 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433322 23333444455555666666666666666666665555555555544433
Q ss_pred H
Q 006482 368 N 368 (643)
Q Consensus 368 a 368 (643)
.
T Consensus 934 ~ 934 (1311)
T TIGR00606 934 T 934 (1311)
T ss_pred H
Confidence 3
No 23
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.81 E-value=0.68 Score=52.89 Aligned_cols=228 Identities=22% Similarity=0.281 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh----
Q 006482 294 QHIEDLTQEKFALQRSLEASRALSESLAAENSS----------LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL---- 359 (643)
Q Consensus 294 qhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsa----------Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l---- 359 (643)
+.++.|..+|..+.|+|.+=++|-++|+.=-.+ ||..-----++..+|+..+.+|+.++..-...+
T Consensus 143 kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~ 222 (617)
T PF15070_consen 143 KLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKS 222 (617)
T ss_pred HHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445566667788889999999988888764333 333322223333444444444444433333333
Q ss_pred ---hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHH-HhhhHHHHHHHHHHhhhHHHhhhhhHHH
Q 006482 360 ---ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ-LENSQSEISSYKKKISSLEKERQDFQST 435 (643)
Q Consensus 360 ---e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlere-le~l~~E~~s~~~qlsslekeR~~l~s~ 435 (643)
..+..+||..---......-...|++|--.|-.+++. +.+ ++.++.+-...+..++-+-+|=+..+-.
T Consensus 223 qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~--------Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~ 294 (617)
T PF15070_consen 223 QEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQ--------QTQLMDRLQHEESQGKVQLEMAHQELQEAQEH 294 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3333333321111111111124555555555444331 111 2233333333333444444444555667
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCcCCCCCcccccccccccccccccCccccCCCCCcccCCCCCCCCCCCCCCCCcccc
Q 006482 436 IEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGR 515 (643)
Q Consensus 436 i~aLQEEKklLqskLRka~~~gk~~~~~k~~~~~kDASTSTdDLai~d~~~~sSn~e~~~s~s~~~~~~~~~P~~P~~G~ 515 (643)
++++..+-..|+..|+.++..|.-.-. + . + +.+.++ |
T Consensus 295 Lea~~qqNqqL~~qls~~~~~~eg~~~--------~-------~----~---~~~ee~--------------~------- 331 (617)
T PF15070_consen 295 LEALSQQNQQLQAQLSLMALPGEGDGL--------E-------S----E---SEEEEA--------------P------- 331 (617)
T ss_pred HHHHHhhhHHHHHHHHhhcCCCCCccc--------c-------c----c---cccccc--------------c-------
Confidence 777888888889999888775522100 0 0 0 000000 1
Q ss_pred ccccCccccchhhH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q 006482 516 LALEGLAVNIPHDQ---MRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLE 576 (643)
Q Consensus 516 ~~l~~~~vsIp~DQ---lRmI~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE 576 (643)
-...+||+|. =+|...+|+.+..++.||.+|...|......|..|...-+.+..+.+
T Consensus 332 ----~~~~~ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q~e~e 391 (617)
T PF15070_consen 332 ----QPMPSIPEDLESREAMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQKEPE 391 (617)
T ss_pred ----CcCcccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 0012566663 46788999999999999999999999988888777666555544443
No 24
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.72 E-value=0.43 Score=48.89 Aligned_cols=48 Identities=13% Similarity=0.277 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 006482 323 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 370 (643)
Q Consensus 323 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaAr 370 (643)
+...+..+.+.-...+.++..+++.++.+++.....++.++.+.+.++
T Consensus 131 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~ 178 (423)
T TIGR01843 131 QQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVIS 178 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444445555555555555444444444444444444
No 25
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.70 E-value=0.54 Score=55.67 Aligned_cols=64 Identities=22% Similarity=0.256 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006482 291 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 354 (643)
Q Consensus 291 aLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a 354 (643)
..+|..-+....|+.+-+.+..+|+..+++-.-+.+|-=.+++|.-...+-..+-|||++|.+-
T Consensus 334 ~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaq 397 (980)
T KOG0980|consen 334 QIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQ 397 (980)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888899999999999999999999999999999999999998888888888887543
No 26
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.70 E-value=0.15 Score=53.66 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=15.6
Q ss_pred HHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 006482 405 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 440 (643)
Q Consensus 405 erele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ 440 (643)
+.+++.+...|.....+...+..+=++++..++.++
T Consensus 231 ~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 231 EEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444444444444444444444444444444444433
No 27
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.64 E-value=0.32 Score=45.92 Aligned_cols=125 Identities=19% Similarity=0.301 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHH
Q 006482 313 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 392 (643)
Q Consensus 313 s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEE 392 (643)
+.+-++.|...+-.|-+++-+....|..|+..+.+|+.+|..-...|..++.-.+..-..... +-.|-.-|-.||+
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~----~E~l~rriq~LEe 87 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN----AEQLNRRIQLLEE 87 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----HHHHHhhHHHHHH
Confidence 334444444444444444444444445555555444444433333333332222211111111 1134444455555
Q ss_pred HHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHH
Q 006482 393 KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 441 (643)
Q Consensus 393 k~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQE 441 (643)
.+-+.-..---....|..+...+..++|++.+|+.+|..+..-++.|..
T Consensus 88 ele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 88 ELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5544433222233444555566666777777777666666555555543
No 28
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.63 E-value=2.9 Score=51.51 Aligned_cols=111 Identities=16% Similarity=0.263 Sum_probs=60.5
Q ss_pred ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----hhHHHHHHHHHHHHHH
Q 006482 275 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ-----QRSVVNQLKSEMEKLQ 349 (643)
Q Consensus 275 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNq-----Q~~~v~qLk~~mE~Lq 349 (643)
+-..+|.-+.++.++..|.+-|++|.+-+-.|.+.-++-.+| +.+... -+.||+ ....+-..+.+++.++
T Consensus 208 ~~l~~~l~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l-~~i~~~----y~~y~~~~~~~~~~~~~~~~~~~~~~~ 282 (1353)
T TIGR02680 208 DALTEALPPLDDDELTDVADALEQLDEYRDELERLEALERAL-RNFLQR----YRRYARTMLRRRATRLRSAQTQYDQLS 282 (1353)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888899999999999988887776665543333333 333322 334444 2233333444445555
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhH
Q 006482 350 EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 390 (643)
Q Consensus 350 ~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~L 390 (643)
.++......++....+++.+........++-..+-.|+..|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 283 RDLGRARDELETAREEERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55444444455555555555544444444444444444443
No 29
>PRK09039 hypothetical protein; Validated
Probab=96.63 E-value=0.24 Score=52.28 Aligned_cols=67 Identities=22% Similarity=0.260 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 006482 374 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 440 (643)
Q Consensus 374 ~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ 440 (643)
+++..|+..|..+...+....-+.+.+..+|+.|++.|+..+.+++..|.++++.-.+.+.-|+.|+
T Consensus 112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555666666555555555555555555544444444443
No 30
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.57 E-value=0.59 Score=51.82 Aligned_cols=124 Identities=27% Similarity=0.294 Sum_probs=90.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhh-------h
Q 006482 330 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE-------L 402 (643)
Q Consensus 330 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~e-------L 402 (643)
........+.+.+..++....|+..=...+++|+.|....+.+.....+|-....++|..|+.++.++|+.- -
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~ 361 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE 361 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 356667777788888888888888888999999999999999999999999999999999999999998764 1
Q ss_pred -------hhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482 403 -------KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 403 -------Klerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
.+...|+.+..|.+.+++.......+...+...++...-.-+-++.||+.+
T Consensus 362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa 419 (522)
T PF05701_consen 362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAA 419 (522)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133444555555555555555555555555555555554445555555544
No 31
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.53 E-value=0.25 Score=59.83 Aligned_cols=165 Identities=24% Similarity=0.277 Sum_probs=104.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHH---H
Q 006482 285 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ----QRSVVNQLKSEMEKLQEEIKVQL---V 357 (643)
Q Consensus 285 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNq----Q~~~v~qLk~~mE~Lq~Ei~aQ~---~ 357 (643)
..+.-+-|++.|+.++.+...|+| ++.+|++.=..|+......-++ .-..+.+++++|+-+++..+.-. -
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~~---~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~ 539 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQR---EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLE 539 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567899999999999999998 4445544444433322222222 23345556666666655544442 2
Q ss_pred HhhhhHHHHHHHhhhhhhHHH--------------HHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 006482 358 ELESFRNEYANVRLECNAADE--------------RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 423 (643)
Q Consensus 358 ~le~l~aErdaArle~~aA~E--------------Rak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qls 423 (643)
.+.+++.+.+.+.+.+.+..+ +-+.+..++-.+++++-.+-..+.++-++..+++.+.+.++++--
T Consensus 540 kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~ 619 (1317)
T KOG0612|consen 540 KVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRT 619 (1317)
T ss_pred hHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666666664444 233344566789999999988889999999999999888888877
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482 424 SLEKERQDFQSTIEALQEEKKMMQSKLRK 452 (643)
Q Consensus 424 slekeR~~l~s~i~aLQEEKklLqskLRk 452 (643)
.+...+..++..|.-||+.-+.+...|++
T Consensus 620 ~~~e~~~~l~~~i~sL~~~~~~~~~~l~k 648 (1317)
T KOG0612|consen 620 EISEIIAELKEEISSLEETLKAGKKELLK 648 (1317)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHHH
Confidence 77777776666666666544444333333
No 32
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.51 E-value=0.53 Score=48.37 Aligned_cols=102 Identities=24% Similarity=0.302 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHhhhh--HHHH
Q 006482 296 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV-------QLVELESF--RNEY 366 (643)
Q Consensus 296 IeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a-------Q~~~le~l--~aEr 366 (643)
|..|..+++.|.+-..-.++..+.+-.|-+++-++|=..--.+..++.++-+++.+|+. -...+.++ .-||
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~ 91 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL 91 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 33445566665555555555555555555555555555555555555555555555443 33333333 5678
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006482 367 ANVRLECNAADERAKILASEVIGLEEKALRL 397 (643)
Q Consensus 367 daArle~~aA~ERak~LAaEVV~LEEk~l~L 397 (643)
.+...+...|.+|...|-.|++.|.++.-.+
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l 122 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKL 122 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999988887776654
No 33
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.44 E-value=0.88 Score=46.63 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHH
Q 006482 339 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 378 (643)
Q Consensus 339 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~E 378 (643)
..++.++++++.++......++.+..+...++.....+.+
T Consensus 140 ~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~ 179 (423)
T TIGR01843 140 STLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISE 179 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555445555555555544444444443
No 34
>PRK03918 chromosome segregation protein; Provisional
Probab=96.43 E-value=0.69 Score=52.67 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=37.3
Q ss_pred HHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh-----hhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh
Q 006482 357 VELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR-----SNELKLERQLENSQSEISSYKKKISSLEKERQD 431 (643)
Q Consensus 357 ~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR-----S~eLKlerele~l~~E~~s~~~qlsslekeR~~ 431 (643)
..++.+..++...+..+....+....|..++-.|++++-.++ ...-.++++++.+..++..+++++..++++-..
T Consensus 612 ~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~ 691 (880)
T PRK03918 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREE 691 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444455444555555555555555553 333333444444444444444444444444444
Q ss_pred hHHHHHHH
Q 006482 432 FQSTIEAL 439 (643)
Q Consensus 432 l~s~i~aL 439 (643)
+...|+.+
T Consensus 692 l~~~i~~~ 699 (880)
T PRK03918 692 IKKTLEKL 699 (880)
T ss_pred HHHHHHHH
Confidence 44444444
No 35
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.39 E-value=0.44 Score=44.98 Aligned_cols=131 Identities=20% Similarity=0.297 Sum_probs=107.1
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006482 318 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 397 (643)
Q Consensus 318 esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L 397 (643)
+.|=.|.+.+.+++.+-...+.+|.....+++++|..=.-.+..+-.|.+.++.....|.+.+-....-+...| .+.-
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E--~l~r 80 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE--QLNR 80 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH--HHHh
Confidence 56777889999999999999999999999999999999999999999999999988888877766665544444 3444
Q ss_pred hhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482 398 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 452 (643)
Q Consensus 398 RS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRk 452 (643)
|.+.| |.+|+.+...+..+..++..+.+.-.++.--+.+|..++.-+-.|+-.
T Consensus 81 riq~L--Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee 133 (143)
T PF12718_consen 81 RIQLL--EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE 133 (143)
T ss_pred hHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444 888999888888999999988888888888888888777666665543
No 36
>PRK03918 chromosome segregation protein; Provisional
Probab=96.34 E-value=1.1 Score=51.13 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=12.2
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006482 371 LECNAADERAKILASEVIGLEEKALRL 397 (643)
Q Consensus 371 le~~aA~ERak~LAaEVV~LEEk~l~L 397 (643)
..+..-.++.+.+-.|+..|++++-++
T Consensus 252 ~~~~~l~~~i~~l~~el~~l~~~l~~l 278 (880)
T PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEEL 278 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444555555555554443
No 37
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.33 E-value=0.4 Score=53.42 Aligned_cols=147 Identities=19% Similarity=0.278 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 006482 306 LQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 382 (643)
Q Consensus 306 LqR~L~~s~~l~esLa~ENsaLt~~yN---qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~ 382 (643)
+...|...++..+.|..|-+.|..+|- .-...+.+++.+++.++.++..-...+..-...|...+-++....++-..
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee 394 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE 394 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 556667777778888888888877763 33556777777888888877766667777777788888888889999999
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh--HHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482 383 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS--LEKERQDFQSTIEALQEEKKMMQSKLRK 452 (643)
Q Consensus 383 LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlss--lekeR~~l~s~i~aLQEEKklLqskLRk 452 (643)
+-.+...+.+.+..||..|..++..++.++..++.+++.+.. +-.--.+....+..++++-+.|..+|.+
T Consensus 395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~ 466 (569)
T PRK04778 395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE 466 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999888888888888888877662 1111123445555556665555554443
No 38
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.31 E-value=0.052 Score=56.61 Aligned_cols=118 Identities=23% Similarity=0.328 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006482 289 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 368 (643)
Q Consensus 289 faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErda 368 (643)
+..|+++++++..|+-.+++-|.+-+ .=......+.++..+++.|++|...-..+|+.+..|++.
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~---------------~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~ 75 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKLE---------------EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREE 75 (314)
T ss_dssp ----------------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688899999999999999888776 001123345667777777777766666666666666655
Q ss_pred HhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 006482 369 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 442 (643)
Q Consensus 369 Arle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEE 442 (643)
|..|...||++..++..+|.+ .-.+...+..++....++|+.+..-++.++++
T Consensus 76 --------------l~~el~~le~e~~~l~~eE~~-------~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~ 128 (314)
T PF04111_consen 76 --------------LDQELEELEEELEELDEEEEE-------YWREYNELQLELIEFQEERDSLKNQYEYASNQ 128 (314)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566655555433333 22333444444555555555555554444444
No 39
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.18 E-value=0.44 Score=55.04 Aligned_cols=61 Identities=30% Similarity=0.393 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006482 293 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 353 (643)
Q Consensus 293 qqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 353 (643)
...|.-|-.|--.|...|+.+|.+=+.|=..-..|+..=..-...+.+|+.+.|+||..+.
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~ 477 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQ 477 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888999999999998888887777776555777888888888888887543
No 40
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.15 E-value=0.23 Score=46.97 Aligned_cols=64 Identities=27% Similarity=0.407 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 006482 335 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 398 (643)
Q Consensus 335 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR 398 (643)
...+.++..++.++++.+......+..++.++...+.......+|-+.+..++-.+++++..++
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666666666666666666666666666666665
No 41
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.05 E-value=1.8 Score=43.03 Aligned_cols=162 Identities=22% Similarity=0.321 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006482 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 366 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 366 (643)
.+++.|+.+|+++..|--.|.+---++.+--.-.-+.+..|-+--..-...|-.|+..+.+.+....+---.+-..-+|.
T Consensus 19 n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el 98 (194)
T PF15619_consen 19 NELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEEL 98 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888777666656554444444444444444444444455555555444443322222222222222
Q ss_pred HHHhhhhhh---------HHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHH
Q 006482 367 ANVRLECNA---------ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 437 (643)
Q Consensus 367 daArle~~a---------A~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~ 437 (643)
-..+-.+.+ =.|| ..|..+|-.++.++..---.--.|+++++-.. ..+.+++.+-.+--..++..+.
T Consensus 99 ~k~~~~l~~L~~L~~dknL~eR-eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~---k~~~rql~~e~kK~~~~~~~~~ 174 (194)
T PF15619_consen 99 LKTKDELKHLKKLSEDKNLAER-EELQRKLSQLEQKLQEKEKKIQELEKQLELEN---KSFRRQLASEKKKHKEAQEEVK 174 (194)
T ss_pred HHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1122 22333444444443332222223344443333 5566666666666677888999
Q ss_pred HHHHHHHHHHHHHHh
Q 006482 438 ALQEEKKMMQSKLRK 452 (643)
Q Consensus 438 aLQEEKklLqskLRk 452 (643)
.|++|-..|+.+|..
T Consensus 175 ~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 175 SLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998864
No 42
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.05 E-value=1.9 Score=43.41 Aligned_cols=158 Identities=22% Similarity=0.320 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 006482 289 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 365 (643)
Q Consensus 289 faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yN---qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE 365 (643)
++-|+.-=..|+.|=-.|+|.++..-+.+..|+.|+..|-..+= +--.....|++++|.|+.. +..+-++
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~-------~~~lEE~ 82 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTL-------AKSLEEE 82 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 44556566667788888999999999999999999888876653 2223344556666666654 2344444
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHh---------------------hh
Q 006482 366 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI---------------------SS 424 (643)
Q Consensus 366 rdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~ql---------------------ss 424 (643)
+.-..-.|-....-.+.|.++|-.|.++-.++-.+.=++.+..+.|..+...+.+|| ..
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e 162 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE 162 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444444444555556777778877777766665555555555555544444444444 22
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482 425 LEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 425 lekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
+.+-=....++++.|.-||.+|...|+++
T Consensus 163 L~~~ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 163 LKKTIEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222334455666667777777777654
No 43
>PRK09039 hypothetical protein; Validated
Probab=96.05 E-value=1.4 Score=46.65 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=30.7
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 006482 362 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 425 (643)
Q Consensus 362 l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssl 425 (643)
+..++++.+..++++.-....|-.||-.|++++-.+ +.+|..+..+....+.++..+
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l-------e~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL-------EAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666665555555555555554443 444444444444444444443
No 44
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=95.97 E-value=0.82 Score=46.34 Aligned_cols=115 Identities=23% Similarity=0.272 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 006482 288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 367 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErd 367 (643)
-+..|+|+|.|+-.+ |.+++.-+.++-+.--.+-++||+....+..++..-+ .+|..=..+.+
T Consensus 25 p~~~l~Q~ird~~~~-------l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~----------~Al~~g~E~LA 87 (225)
T COG1842 25 PEKMLEQAIRDMESE-------LAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE----------LALQAGNEDLA 87 (225)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHCCCHHHH
Confidence 348999999998655 5555544444444555566677665555444443321 11111111111
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 006482 368 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 425 (643)
Q Consensus 368 aArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssl 425 (643)
..|-+|-+.|.-.+-.++..+.+++....++++.+..|...|..++.+...+
T Consensus 88 ------r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 88 ------REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666677777777777777777777666643
No 45
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.97 E-value=2.1 Score=43.23 Aligned_cols=35 Identities=31% Similarity=0.373 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHH
Q 006482 538 ALISELALEKEELVQALSSELAQSSKLKDLNNELS 572 (643)
Q Consensus 538 aLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELs 572 (643)
+.|..++.|...+...+..-...+.+|-+.+.-|.
T Consensus 262 ~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld 296 (312)
T PF00038_consen 262 AEIAELEEELAELREEMARQLREYQELLDVKLALD 296 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34555555555555555555555555555555444
No 46
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=95.94 E-value=0.77 Score=51.22 Aligned_cols=128 Identities=13% Similarity=0.230 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh----hHHHHHHHHHHHHHh
Q 006482 314 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN----AADERAKILASEVIG 389 (643)
Q Consensus 314 ~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~----aA~ERak~LAaEVV~ 389 (643)
+.+.+.|+.....+. ++++......++..++.++++++..+...+..+.+..++.|.... .-.+--+.|..|--.
T Consensus 39 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~ 117 (475)
T PRK10361 39 EEMVAELSAAKQQIT-QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFEN 117 (475)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555 455555555566666666666655555555555444333332221 122223456667777
Q ss_pred HHHHHHHHhhhhhhhHHH------HhhhHHHHHHHHHHhhhHH----HhhhhhHHHHHHHHHH
Q 006482 390 LEEKALRLRSNELKLERQ------LENSQSEISSYKKKISSLE----KERQDFQSTIEALQEE 442 (643)
Q Consensus 390 LEEk~l~LRS~eLKlere------le~l~~E~~s~~~qlssle----keR~~l~s~i~aLQEE 442 (643)
|=.++++-++..+.-.++ |.=++..+..++++|..+. ++|..|...|..|++-
T Consensus 118 LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~ 180 (475)
T PRK10361 118 LANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQL 180 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788777777764443 3448889999999999887 4577888888777653
No 47
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.81 E-value=2.1 Score=44.72 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=28.4
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhhHHHHHHHHhhHHHHHHH
Q 006482 277 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASR--------------ALSESLAAENSSLTDSYNQQRSVVNQLK 342 (643)
Q Consensus 277 ~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~--------------~l~esLa~ENsaLt~~yNqQ~~~v~qLk 342 (643)
|.+||+.+.+.- .+-...|.+.+...+.+ .|-+.|...-+.|-..+..-...+..+.
T Consensus 106 f~EY~~a~~d~r---------~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 106 FREYYTADPDMR---------LLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHcCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888754321 22233445554444433 3444555555555555544444443333
Q ss_pred HH
Q 006482 343 SE 344 (643)
Q Consensus 343 ~~ 344 (643)
.-
T Consensus 177 ~~ 178 (325)
T PF08317_consen 177 EL 178 (325)
T ss_pred HH
Confidence 33
No 48
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.80 E-value=1.5 Score=49.01 Aligned_cols=165 Identities=15% Similarity=0.225 Sum_probs=120.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006482 285 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 364 (643)
Q Consensus 285 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a 364 (643)
-..++..|++.|.+.-.-=-.| .|..+.+.++.+..+-+.|.+.+..-...-..+...+..+...+....-.+..+..
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~ 331 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKE 331 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4677888887777732111111 35677788888888888888888888777788888888888888888888889999
Q ss_pred HHHHHhhhhh---hHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHH
Q 006482 365 EYANVRLECN---AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 441 (643)
Q Consensus 365 ErdaArle~~---aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQE 441 (643)
|.+..++.+. .-.++.+.+..++-.|++++..+.-.--+.......+..+...+.+++..+++++..+...|+.|+.
T Consensus 332 Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 332 EIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888854 3467788888888888888886644444444445667777778888888888888888888888775
Q ss_pred HHHHHHHHHH
Q 006482 442 EKKMMQSKLR 451 (643)
Q Consensus 442 EKklLqskLR 451 (643)
+-..+..+|.
T Consensus 412 ~E~eAr~kL~ 421 (569)
T PRK04778 412 DELEAREKLE 421 (569)
T ss_pred HHHHHHHHHH
Confidence 5444444333
No 49
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.77 E-value=0.041 Score=53.13 Aligned_cols=130 Identities=25% Similarity=0.299 Sum_probs=27.4
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHH----------------------HHHHHHhhhhHHHHHHHhhhhhhHHHHHH
Q 006482 324 NSSLTDSYNQQRSVVNQLKSEMEKLQEEI----------------------KVQLVELESFRNEYANVRLECNAADERAK 381 (643)
Q Consensus 324 NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei----------------------~aQ~~~le~l~aErdaArle~~aA~ERak 381 (643)
|..|...||+....+..|+..-..|+.+. ..-...+..+..|...+...|..-..|-.
T Consensus 19 ~~~li~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~ 98 (194)
T PF08614_consen 19 FAELIDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLV 98 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34566666666666666666655555431 11112233345555555555555555544
Q ss_pred HHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482 382 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 382 ~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
.+-.++-.|+.++......--.++.++..+..++..++..+....|.=+.|++.+.+||-+--++..|+++.
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333333444444444444444555555444444455555555555555555554443
No 50
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.75 E-value=0.49 Score=48.61 Aligned_cols=117 Identities=26% Similarity=0.334 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh---------hhhhhhHHH
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR---------SNELKLERQ 407 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR---------S~eLKlere 407 (643)
.+..|--++.+|...+.-+.-+|+.+++|..++.-...+.......|--+|..||..+..+| ....|.+++
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e 90 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERE 90 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 33444444444444444444444555555444444444444444444444444444443333 245566677
Q ss_pred HhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482 408 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 408 le~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
+..|..|+...+++..+|+.+=.++...++.|+++...|+.++.+.
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888888887777778888887777777777655
No 51
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.74 E-value=1.2 Score=55.35 Aligned_cols=132 Identities=15% Similarity=0.239 Sum_probs=65.4
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh-hh
Q 006482 323 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS-NE 401 (643)
Q Consensus 323 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS-~e 401 (643)
+-..|..+..++...+.+++.+++.++.++..-...++.++.+++..+.....+..++..+...|..|+. +.++-- ..
T Consensus 356 ~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~-~~~~~~~~~ 434 (1486)
T PRK04863 356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALER-AKQLCGLPD 434 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCC
Confidence 3344445555555555555555555555555555555555555555555555555555554444444332 111100 11
Q ss_pred hhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh-hCCCCC
Q 006482 402 LKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA-SGSGKS 459 (643)
Q Consensus 402 LKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka-~~~gk~ 459 (643)
| ..++|...+..|..++..++.+..+++.-++.++.+++-+..++... ...|++
T Consensus 435 ~----SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv 489 (1486)
T PRK04863 435 L----TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEV 489 (1486)
T ss_pred C----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 1 12345555566666666666666666666666666655555544432 455565
No 52
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.65 E-value=0.66 Score=57.64 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=48.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh
Q 006482 363 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD 431 (643)
Q Consensus 363 ~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~ 431 (643)
..+++.|+.=|..++=--.-|....-.+++++.++....++++.++..+..+++.++++...+-++-|.
T Consensus 420 i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 420 VQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGE 488 (1486)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444455555555433333345566677788888888888888999999988888888888776655444
No 53
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.65 E-value=0.13 Score=49.78 Aligned_cols=116 Identities=22% Similarity=0.282 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006482 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 366 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 366 (643)
.-.+.|++-+.++-..|-.++--|-....-.+.|-.+......+-+.....+..|+.++..|..+|+.....++.+..|+
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL 153 (194)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555667777766666666677777777777888888888999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhh
Q 006482 367 ANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 402 (643)
Q Consensus 367 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eL 402 (643)
.+.+++++.+.++.+.|-.|=-.|=+|.++.+..+-
T Consensus 154 ~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eA 189 (194)
T PF08614_consen 154 QALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEA 189 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997765543
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.64 E-value=1.3 Score=53.49 Aligned_cols=168 Identities=23% Similarity=0.332 Sum_probs=111.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006482 285 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE-----NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 359 (643)
Q Consensus 285 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~E-----NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l 359 (643)
+..+...|+.+|+|+ +||+.-.+.++--.+.-++|-++ .=...+.||.|...+.-.+..+..|++.+.-+...+
T Consensus 233 ~~e~i~~l~k~i~e~-~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~ 311 (1074)
T KOG0250|consen 233 KEEEIKNLKKKIKEE-EEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKI 311 (1074)
T ss_pred HHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999987 56777555555555444444433 334678899998888777777777777776665555
Q ss_pred hhh--------------HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH-------HHhhhhhhhHHHHhhhHHHH---
Q 006482 360 ESF--------------RNEYANVRLECNAADERAKILASEVIGLEEKAL-------RLRSNELKLERQLENSQSEI--- 415 (643)
Q Consensus 360 e~l--------------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l-------~LRS~eLKlerele~l~~E~--- 415 (643)
+.+ +.|.++---+|..|.+..+.+..||..|++++. ++++.-=.++|++..++.+.
T Consensus 312 ~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~ 391 (1074)
T KOG0250|consen 312 EEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNE 391 (1074)
T ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444 466666677888999999999999999887654 34444444566665554443
Q ss_pred -----HHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482 416 -----SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 416 -----~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
...+.++..|+++.-.++..+..|.+|...++.+++..
T Consensus 392 ~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~ 434 (1074)
T KOG0250|consen 392 LGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEE 434 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555666666666666666666666665543
No 55
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.62 E-value=0.0031 Score=71.11 Aligned_cols=158 Identities=30% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh-----
Q 006482 291 ALEQHIEDLTQEKFALQRSLEASRALSES----LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES----- 361 (643)
Q Consensus 291 aLqqhIeDLT~EKfaLqR~L~~s~~l~es----La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~----- 361 (643)
-|++.|.+|.+||-.|+-.+...+.-..+ ..+.+..+..+++.-...+.+|+++++++...+.-+...++.
T Consensus 197 el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei 276 (713)
T PF05622_consen 197 ELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEI 276 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888887666544433222 224455566677777777777777776665433333322222
Q ss_pred -------------------hHHHHHHHhhhhhhHHHHHHHHHHH-----------------HHhHHHHHHHHhhhhhhhH
Q 006482 362 -------------------FRNEYANVRLECNAADERAKILASE-----------------VIGLEEKALRLRSNELKLE 405 (643)
Q Consensus 362 -------------------l~aErdaArle~~aA~ERak~LAaE-----------------VV~LEEk~l~LRS~eLKle 405 (643)
++-|+|..|-.+ +|+..|.++ |-.||++..-+.-..+.||
T Consensus 277 ~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a----~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LE 352 (713)
T PF05622_consen 277 DELRQENEELQAEAREARALRDELDELREKA----DRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLE 352 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333222 234444443 3344444444433445566
Q ss_pred HHHhh---hHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482 406 RQLEN---SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 452 (643)
Q Consensus 406 rele~---l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRk 452 (643)
.++.. ++..+..|++++..++.++.+...-++.++.|.+.|+.++..
T Consensus 353 eel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~ 402 (713)
T PF05622_consen 353 EELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEA 402 (713)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655 666778888888888888777777777777777666666543
No 56
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.60 E-value=3.8 Score=43.40 Aligned_cols=103 Identities=14% Similarity=0.188 Sum_probs=47.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCc-ccccccccccccccc-cCccccCCCCCcccCCCCCCCCC
Q 006482 427 KERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTA-ASTVNASTSTEDLAI-TDTTLDNSNQDTHDDASLPRIDA 504 (643)
Q Consensus 427 keR~~l~s~i~aLQEEKklLqskLRka~~~gk~~~~~k~~-~~~kDASTSTdDLai-~d~~~~sSn~e~~~s~s~~~~~~ 504 (643)
-||+.|.-.+..|.+|-+-|..-|-=.-.+-..+.+..|+ .+.+..-|+.-+-.+ |+.|..--..+.+...-..-+.+
T Consensus 157 dEke~llesvqRLkdEardlrqelavr~kq~E~pR~~~Pss~~~er~dtavqa~~slP~tP~~~gs~~~f~~pr~~d~~~ 236 (333)
T KOG1853|consen 157 DEKEVLLESVQRLKDEARDLRQELAVRTKQTERPRIVEPSSVEAERTDTAVQAPESLPDTPSPGGSKEEFKMPRSEDVFM 236 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCccchhhhhcchhhcCcccCCCCCCCCCchhhcCCCccccccc
Confidence 3566677788888888776665443332221222343343 233322233222222 44433111111111111234567
Q ss_pred CCCCCCCccccccccCccccchhhHHHHHh
Q 006482 505 SGSTLLPESGRLALEGLAVNIPHDQMRMIH 534 (643)
Q Consensus 505 ~~~P~~P~~G~~~l~~~~vsIp~DQlRmI~ 534 (643)
.++|+.|... -++.+|.-|.||.+.
T Consensus 237 g~~pltp~aR-----isalnivgDllRkvg 261 (333)
T KOG1853|consen 237 GDVPLTPDAR-----ISALNIVGDLLRKVG 261 (333)
T ss_pred CCCCCCchhh-----HHHHHHHHHHHHHhh
Confidence 7777666652 123456666666654
No 57
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.53 E-value=2.5 Score=51.97 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHH
Q 006482 535 NINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLT 586 (643)
Q Consensus 535 nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELlt 586 (643)
.+.+|+.+|+.+.++....|....+++=+ .-|-.++.++|-...++=|-.+
T Consensus 1083 ~~~~l~~~l~~~i~~~~~ll~e~er~l~E-~~L~~~v~~~l~~ri~~A~~~v 1133 (1353)
T TIGR02680 1083 TPAGLLARLEQEIAQRRELLTARERELLE-NHLQGEIARHLQSLILAAERQV 1133 (1353)
T ss_pred CHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777666555432 2344555555555555555444
No 58
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.35 E-value=3.6 Score=41.59 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006482 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESL 320 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esL 320 (643)
.+...|.+-|++++.||-.|+-.+...+.-++.+
T Consensus 54 ~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~ 87 (312)
T PF00038_consen 54 EELRELRRQIDDLSKEKARLELEIDNLKEELEDL 87 (312)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence 4566777888888888888877777666655554
No 59
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.26 E-value=3.6 Score=43.49 Aligned_cols=10 Identities=10% Similarity=0.381 Sum_probs=6.5
Q ss_pred ccccccCCch
Q 006482 277 QHGFYSTKHN 286 (643)
Q Consensus 277 ~~~F~s~~~~ 286 (643)
|.+||+.+.+
T Consensus 101 F~EY~~a~~d 110 (312)
T smart00787 101 FKEYFSASPD 110 (312)
T ss_pred HHHHHcCCHH
Confidence 7778776533
No 60
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.26 E-value=3.7 Score=41.10 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006482 289 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 333 (643)
Q Consensus 289 faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNq 333 (643)
++.|++-||+.-..--.++..|..+..-++.+-.|..+|.++...
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~ 47 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQL 47 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777777777777777666543
No 61
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.17 E-value=2.6 Score=50.98 Aligned_cols=157 Identities=20% Similarity=0.300 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 006482 294 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 373 (643)
Q Consensus 294 qhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~ 373 (643)
.-|+++-++=-..+|++-..++-..+|. ..+.+.++.++..+++|+.+++.+.+.++++...++.-.-||.+.+++|
T Consensus 748 e~v~e~~~~Ike~~~~~k~~~~~i~~lE---~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~ 824 (1174)
T KOG0933|consen 748 EEVEESEQQIKEKERALKKCEDKISTLE---KKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEH 824 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443333344444444444443332 3467778888888888888888777777777766666666666666666
Q ss_pred hhH--------------HHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHH--------------HhhhH
Q 006482 374 NAA--------------DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK--------------KISSL 425 (643)
Q Consensus 374 ~aA--------------~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~--------------qlssl 425 (643)
.+- ..--..|.+|+-.|+.++...-.+.-+++.++...+...+-+.+ +.+..
T Consensus 825 e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~ 904 (1174)
T KOG0933|consen 825 EELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDG 904 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcc
Confidence 543 33334455555555555555444444444444443333333332 22333
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482 426 EKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 426 ekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
+-+|+.|.-.+..++.|++.+-.++++.
T Consensus 905 ~l~~kkle~e~~~~~~e~~~~~k~v~~l 932 (1174)
T KOG0933|consen 905 ELERKKLEHEVTKLESEKANARKEVEKL 932 (1174)
T ss_pred cchHHHHHhHHHHhhhhHHHHHHHHHHH
Confidence 3344444444445555554444444444
No 62
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.14 E-value=2.7 Score=41.41 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006482 288 DFAALEQHIEDLTQEKFALQRSLEAS 313 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaLqR~L~~s 313 (643)
.+..++..|.++-.++-.|++.++..
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777665553
No 63
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.06 E-value=3.5 Score=41.26 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=14.9
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006482 371 LECNAADERAKILASEVIGLEEKALRL 397 (643)
Q Consensus 371 le~~aA~ERak~LAaEVV~LEEk~l~L 397 (643)
.++..|.+|+..+...|..||+++..+
T Consensus 127 ~~Le~aEeR~e~~E~ki~eLE~el~~~ 153 (237)
T PF00261_consen 127 QELERAEERAEAAESKIKELEEELKSV 153 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence 344455566666666666666555444
No 64
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=95.01 E-value=0.72 Score=52.73 Aligned_cols=70 Identities=11% Similarity=0.237 Sum_probs=42.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhh
Q 006482 326 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSN 400 (643)
Q Consensus 326 aLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ 400 (643)
.+.+++-+....+.-|.+++.++++++.....+++.|+.+..- .+....++.+-.++..|+.++..++..
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~-----~d~~~ea~~~l~~~~~l~~ql~~l~~~ 326 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDS-----VDLNLEAKAVLEQIVNVDNQLNELTFR 326 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555667777777777888777777778887776532 122233444444555566666555443
No 65
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.99 E-value=1.3 Score=53.25 Aligned_cols=158 Identities=20% Similarity=0.306 Sum_probs=108.0
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006482 282 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 361 (643)
Q Consensus 282 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~ 361 (643)
-+.+......|+..|+.+-+.=-+--+.+++.....+.|--|.++|.+-----...+.++...++-|..++..+.+.+..
T Consensus 782 ~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~ 861 (1174)
T KOG0933|consen 782 KANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDK 861 (1174)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666666666666555666777778888888888888887766656667888888888899999999999999
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHH---HhHHHHHHHHhhhh----hhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHH
Q 006482 362 FRNEYANVRLECNAADERAKILASEV---IGLEEKALRLRSNE----LKLERQLENSQSEISSYKKKISSLEKERQDFQS 434 (643)
Q Consensus 362 l~aErdaArle~~aA~ERak~LAaEV---V~LEEk~l~LRS~e----LKlerele~l~~E~~s~~~qlsslekeR~~l~s 434 (643)
+..++..++.+.+.-..+-+..--|+ +...++|++..++- -|++.++..+..+...++++++.+.+
T Consensus 862 ~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~------- 934 (1174)
T KOG0933|consen 862 VEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLK------- 934 (1174)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHH-------
Confidence 99999999988888877777776666 66677777655431 23344444455555555555555433
Q ss_pred HHHHHHHHHHHH
Q 006482 435 TIEALQEEKKMM 446 (643)
Q Consensus 435 ~i~aLQEEKklL 446 (643)
-.+-+-+||.++
T Consensus 935 k~~wi~~ek~~f 946 (1174)
T KOG0933|consen 935 KHEWIGDEKRLF 946 (1174)
T ss_pred hccchhHHHHhh
Confidence 334444555544
No 66
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.95 E-value=6.4 Score=42.22 Aligned_cols=41 Identities=37% Similarity=0.528 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006482 290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDS 330 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~ 330 (643)
-.|.--|..|.+|---|...|+.-+.-+..|..||.+|-..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~ 63 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA 63 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888888888888888888889999999888654
No 67
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.91 E-value=1.7 Score=51.11 Aligned_cols=120 Identities=22% Similarity=0.256 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 006482 292 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 371 (643)
Q Consensus 292 LqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArl 371 (643)
+.+-+..++-|-.+|-++|+.--.+...|-.+....-..++.....+..+..+.--|+-|+.+..-+|+--..||+--+.
T Consensus 97 ~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~ 176 (769)
T PF05911_consen 97 LSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRR 176 (769)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33444455555556666666555666666666666666777777777777777788888888888888888899998888
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHhhhh----------hhhHHHHhhh
Q 006482 372 ECNAADERAKILASEVIGLEEKALRLRSNE----------LKLERQLENS 411 (643)
Q Consensus 372 e~~aA~ERak~LAaEVV~LEEk~l~LRS~e----------LKlerele~l 411 (643)
.+.+|.-.=.-=..-|.-||+.|.|||.-. -|++.|++.+
T Consensus 177 ~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~ 226 (769)
T PF05911_consen 177 AAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESL 226 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHh
Confidence 888887554444455668999999999765 3455666655
No 68
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.91 E-value=0.68 Score=51.01 Aligned_cols=104 Identities=16% Similarity=0.306 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 416 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~ 416 (643)
+++.+..+++.++.|+..-.-+...+..||.+++.|.+.+.+-=+ ..+++...+|-+-+|.+.++..+.....
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~-------~v~~~~~~a~~n~~kAqQ~lar~t~Q~q 147 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQERE-------AVRQELAAARQNLAKAQQELARLTKQAQ 147 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888887777888888888888888887765322 2355566677777777777766666666
Q ss_pred HHHHHhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 006482 417 SYKKKISSLEKERQDFQSTIEALQEEKKMMQ 447 (643)
Q Consensus 417 s~~~qlsslekeR~~l~s~i~aLQEEKklLq 447 (643)
.++..|--|..+|..|.--.+.||-+.|.||
T Consensus 148 ~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 148 DLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666777777777777777777766
No 69
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.87 E-value=5.1 Score=46.76 Aligned_cols=57 Identities=21% Similarity=0.359 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 006482 314 RALSESLAAENSSLTDSY-NQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 370 (643)
Q Consensus 314 ~~l~esLa~ENsaLt~~y-NqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaAr 370 (643)
++.-+-|..--.-|.+.| -.+..+-.++++.+..|+.+++.|+..+..+..|++..+
T Consensus 535 ~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~ 592 (717)
T PF10168_consen 535 QECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR 592 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555665 445566677888888888888888888888888777654
No 70
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.85 E-value=7.1 Score=42.23 Aligned_cols=26 Identities=8% Similarity=0.040 Sum_probs=12.6
Q ss_pred HHHhHHHHHHHHhhhhhhhHHHHhhh
Q 006482 386 EVIGLEEKALRLRSNELKLERQLENS 411 (643)
Q Consensus 386 EVV~LEEk~l~LRS~eLKlerele~l 411 (643)
++..|+.++.+++.+--.++.++.++
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555555555444444444443
No 71
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.83 E-value=13 Score=45.29 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=35.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHH
Q 006482 531 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLT 586 (643)
Q Consensus 531 RmI~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELlt 586 (643)
.=|..|.+-|..+..+++++=..|..-..+...++..-..+...++...+.|+-+.
T Consensus 607 ~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 662 (1201)
T PF12128_consen 607 ERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLK 662 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34667778888887777777777766666666666665555555555544444433
No 72
>PF13166 AAA_13: AAA domain
Probab=94.76 E-value=3.3 Score=46.35 Aligned_cols=117 Identities=21% Similarity=0.336 Sum_probs=55.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH-------------HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHH
Q 006482 330 SYNQQRSVVNQLKSEMEKLQEEIKVQLV-------------ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 396 (643)
Q Consensus 330 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~-------------~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~ 396 (643)
.+.+-...+.+++..++.+...+..-.. .+..+....+.....+.+..+....+..+.-.|.+++..
T Consensus 323 ~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~ 402 (712)
T PF13166_consen 323 DKEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWL 402 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555444321 122334444455555555666666677777766666654
Q ss_pred HhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHH
Q 006482 397 LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 448 (643)
Q Consensus 397 LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqs 448 (643)
..-..+ ...++.+..++..+++++..++++...+...+..++.+.+.|+.
T Consensus 403 ~~~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~ 452 (712)
T PF13166_consen 403 HLIAKL--KEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEA 452 (712)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222 22333333344444444444444444444444444444433333
No 73
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.54 E-value=0.49 Score=49.55 Aligned_cols=117 Identities=18% Similarity=0.252 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHH
Q 006482 336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 415 (643)
Q Consensus 336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~ 415 (643)
..+.+|+.++++.+.|.+.+..-+..+..+-+- ..+..+..+.-+.|-.|...|++++..+..++-.+.+|++.+..+.
T Consensus 9 ~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~-~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 9 LLLEQLDKQLEQAEKERDTYQEFLKKLEEESDS-EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp ----------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999888888632111 1122333344444444444444444444444444444444444444
Q ss_pred HHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482 416 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 416 ~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
..++..-...-+++..++..+-.+++|...+..+++.+
T Consensus 88 ~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 88 EELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555555556665555544433
No 74
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.45 E-value=8.8 Score=41.54 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 006482 431 DFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 431 ~l~s~i~aLQEEKklLqskLRka 453 (643)
.+...++.++.+...++.+|.++
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a 310 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSL 310 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555443
No 75
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=94.43 E-value=2 Score=42.77 Aligned_cols=95 Identities=26% Similarity=0.315 Sum_probs=68.8
Q ss_pred HHhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 006482 321 AAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 398 (643)
Q Consensus 321 a~ENsaLt~~yNqQ--~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR 398 (643)
--+|=+|+.+|-.. ..-..+|...+++|+.+++.+.-.++.+-.+|-..|+++ +.++-.||.+-..+-
T Consensus 119 R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~----------~~~L~~Le~~W~~~v 188 (221)
T PF05700_consen 119 RLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEA----------GEELRYLEQRWKELV 188 (221)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHH
Confidence 34566677777433 345578889999999999999999999999999887764 345566777777777
Q ss_pred hhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 006482 399 SNELKLERQLENSQSEISSYKKKISSL 425 (643)
Q Consensus 399 S~eLKlerele~l~~E~~s~~~qlssl 425 (643)
+.-+.++....+|..||.+.+++...+
T Consensus 189 ~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 189 SKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766777666776766666665543
No 76
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.41 E-value=3.9 Score=49.26 Aligned_cols=101 Identities=27% Similarity=0.405 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh--------------hhhh
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR--------------SNEL 402 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR--------------S~eL 402 (643)
.+.-|+-++|.+++-+..-...||-+++|..+-=-..+.+. +-|.-.||.+-.+|| -+..
T Consensus 326 RaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~s------s~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~q 399 (1243)
T KOG0971|consen 326 RAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAAS------SYQFKQLEQQNARLKDALVRLRDLSASEKQDHQ 399 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc------hHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34456666666666666666777777777766422221111 223344444444443 3456
Q ss_pred hhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 006482 403 KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 443 (643)
Q Consensus 403 Klerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEK 443 (643)
|+.|++|-.+.|+.-++++-+-|..+=..+.++|.-|||.-
T Consensus 400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888887777777777778877777653
No 77
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.35 E-value=3.6 Score=48.09 Aligned_cols=106 Identities=19% Similarity=0.297 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHH
Q 006482 341 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK 420 (643)
Q Consensus 341 Lk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~ 420 (643)
.+.++|..++.-+.|+. .+..++.. +.......+..|-..+-.||.+...+.+.--..+++.+.|+..++....
T Consensus 138 ~q~ELee~q~~Hqeql~---~Lt~aHq~---~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~ 211 (739)
T PF07111_consen 138 SQRELEEAQRLHQEQLS---SLTQAHQE---ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQE 211 (739)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 35556666665555544 33333333 3345566777777777777776666655555556666666666555544
Q ss_pred Hhhh------------------------HHHhhhhhHHHHHHHHHHH-------HHHHHHHHh
Q 006482 421 KISS------------------------LEKERQDFQSTIEALQEEK-------KMMQSKLRK 452 (643)
Q Consensus 421 qlss------------------------lekeR~~l~s~i~aLQEEK-------klLqskLRk 452 (643)
.+++ -+-||+.|..+|..||||| -+||+||.-
T Consensus 212 ~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqS 274 (739)
T PF07111_consen 212 ELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQS 274 (739)
T ss_pred HHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 2578999999999999999 456666654
No 78
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.30 E-value=2.1 Score=45.88 Aligned_cols=142 Identities=17% Similarity=0.246 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH
Q 006482 302 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 381 (643)
Q Consensus 302 EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak 381 (643)
++-.|..-|..+++-+..|..|...|..++++-.+-+.-|+..+.+++-... ......+..||.+.......|.++..
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~--~~~~~~~~~ere~lV~qLEk~~~q~~ 143 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDE--GIGARHFPHEREDLVEQLEKLREQIE 143 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc--cccccccchHHHHHHHHHHHHHHHHH
Confidence 5556667777777777778888888777776655555555555544443321 12222334677777777777777777
Q ss_pred HHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482 382 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 452 (643)
Q Consensus 382 ~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRk 452 (643)
.|.-++..+-+... ||+.||. .-++.+.++...++-+=.....=.--||+|=.|-|-|+.||..
T Consensus 144 qLe~d~qs~lDEke-----El~~ERD--~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q 207 (319)
T PF09789_consen 144 QLERDLQSLLDEKE-----ELVTERD--AYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQ 207 (319)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 77777666555433 3333333 3444444444444433222111111245554444444444443
No 79
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.29 E-value=2.8 Score=49.37 Aligned_cols=151 Identities=22% Similarity=0.271 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 006482 292 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL----TDSYNQ----QRSVVNQLKSEMEKLQEEIKVQLVELESFR 363 (643)
Q Consensus 292 LqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaL----t~~yNq----Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~ 363 (643)
|+.-+++|-.|.-.|.+.|+..+.-......+...+ ..+-.+ -+..+.-+++++..++.+.+.....+..+.
T Consensus 1 Lq~ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~Lq 80 (775)
T PF10174_consen 1 LQAQLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQ 80 (775)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445677888888888888888776666665554331 011111 122344445555555555555555555555
Q ss_pred HHHHHHhhhh-------hhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHH
Q 006482 364 NEYANVRLEC-------NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTI 436 (643)
Q Consensus 364 aErdaArle~-------~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i 436 (643)
.|. .++-+. ..+......+.. +=-.++.+.++-. +.+.+..|+..+++.+..++-.=..++-++
T Consensus 81 eEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~-------E~er~~~El~~lr~~lE~~q~~~e~~q~~l 151 (775)
T PF10174_consen 81 EEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQA-------ERERLQRELERLRKTLEELQLRIETQQQTL 151 (775)
T ss_pred HHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 333222 233333334444 3334455555444 444455555555555555544444566777
Q ss_pred HHHHHHHHHHHHHHH
Q 006482 437 EALQEEKKMMQSKLR 451 (643)
Q Consensus 437 ~aLQEEKklLqskLR 451 (643)
++.+++.+.|+.+|-
T Consensus 152 ~~~~eei~kL~e~L~ 166 (775)
T PF10174_consen 152 DKADEEIEKLQEMLQ 166 (775)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777788888888774
No 80
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.23 E-value=2.1 Score=40.64 Aligned_cols=76 Identities=21% Similarity=0.266 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006482 308 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV 387 (643)
Q Consensus 308 R~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEV 387 (643)
..+...+..-..|..|-+.+-++.+.....+..++++...++.+ ......+....++.-+.+..|+
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~--------------~~~~~~~l~~l~~~~~~~~~e~ 146 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELREL--------------LKSVEERLDSLDESIKELEKEI 146 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555555555555555444433 3333333334444444455555
Q ss_pred HhHHHHHHHH
Q 006482 388 IGLEEKALRL 397 (643)
Q Consensus 388 V~LEEk~l~L 397 (643)
..|...+.+.
T Consensus 147 ~~l~~~~~~~ 156 (191)
T PF04156_consen 147 RELQKELQDS 156 (191)
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 81
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.23 E-value=4.7 Score=39.75 Aligned_cols=12 Identities=17% Similarity=0.183 Sum_probs=6.6
Q ss_pred ccccCccccchh
Q 006482 516 LALEGLAVNIPH 527 (643)
Q Consensus 516 ~~l~~~~vsIp~ 527 (643)
+.+.|+...|+.
T Consensus 223 i~~~gs~s~i~d 234 (302)
T PF10186_consen 223 ITPSGSRSTIID 234 (302)
T ss_pred cccCccccchhh
Confidence 345666666555
No 82
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=94.19 E-value=0.4 Score=40.81 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHH
Q 006482 334 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 396 (643)
Q Consensus 334 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~ 396 (643)
....+..|+..+.++.+.+.++..++..+..|||.|......|-+....|-+||-.|..+.-.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999999999999999999888888888777766433
No 83
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.16 E-value=5.7 Score=38.72 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006482 290 AALEQHIEDLTQEKFALQRSLEASRALSESLA 321 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa 321 (643)
..|+|+|.||-..--.+.+++.+.......|.
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le 57 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLE 57 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999998877777777776666555443
No 84
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.14 E-value=19 Score=44.08 Aligned_cols=62 Identities=24% Similarity=0.408 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH-HHHHHHHHhHHHHHHHHh
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA-KILASEVIGLEEKALRLR 398 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa-k~LAaEVV~LEEk~l~LR 398 (643)
.+++++.++.+.+.+++.....+..++.++.+.+.++..+.+.. ..+..++-.|+.++.++.
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 636 KIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLK 698 (1201)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555655556666777777777777776665444 345555666666665554
No 85
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.10 E-value=10 Score=40.94 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 006482 359 LESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 395 (643)
Q Consensus 359 le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l 395 (643)
+..+..++...+..+++-.-..+.+-.++-.|+.++.
T Consensus 256 l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~ 292 (498)
T TIGR03007 256 IEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKE 292 (498)
T ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666666666666653
No 86
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.95 E-value=4 Score=43.62 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=17.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006482 284 KHNEDFAALEQHIEDLTQEKFALQRSLEASR 314 (643)
Q Consensus 284 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~ 314 (643)
.+...+.+||+-|.+|-+|-..|--...+-.
T Consensus 157 ~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 157 QKCIQLEALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444566677766666666655544433333
No 87
>PF13514 AAA_27: AAA domain
Probab=93.90 E-value=9.7 Score=45.81 Aligned_cols=48 Identities=19% Similarity=0.451 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCc
Q 006482 413 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSI 460 (643)
Q Consensus 413 ~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~~gk~~ 460 (643)
..|..+++....+++.+..++.-++.+.++-..+..+|+.+...|.++
T Consensus 452 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 499 (1111)
T PF13514_consen 452 ETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVP 499 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 567788888888888888888888888899999999999998888774
No 88
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=93.90 E-value=10 Score=42.00 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=48.8
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006482 304 FALQRSLE-ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 369 (643)
Q Consensus 304 faLqR~L~-~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaA 369 (643)
.+|+-+++ +.+++.-.|.++-++-.+..-+-.+++.-|..+.|||+++|.-.......+..+.|..
T Consensus 106 ~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl 172 (561)
T KOG1103|consen 106 ASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKL 172 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 5788999999999888877766677888999999999999987776665554444443
No 89
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.87 E-value=9.1 Score=47.37 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=45.6
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 006482 322 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 383 (643)
Q Consensus 322 ~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L 383 (643)
.|-.+.-...+.-+.++.+|...||.|+.++..+-.+-+.+..+.+.|+.++..|..-.+.|
T Consensus 1605 ~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~l 1666 (1758)
T KOG0994|consen 1605 EETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEIL 1666 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445566677788999999999999888777777777777888888777776665533
No 90
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.82 E-value=8.6 Score=46.69 Aligned_cols=176 Identities=24% Similarity=0.341 Sum_probs=97.1
Q ss_pred ccccccccCCchhhHHHH-------------------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006482 275 ENQHGFYSTKHNEDFAAL-------------------EQHIE--DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 333 (643)
Q Consensus 275 e~~~~F~s~~~~~~faaL-------------------qqhIe--DLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNq 333 (643)
.+.--|...++-.+||.| ++|++ ||-++--+|++.+....+--+.|-+++++|....+.
T Consensus 141 ~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~ 220 (1072)
T KOG0979|consen 141 DNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVER 220 (1072)
T ss_pred CchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345569999999999965 45554 555666677777777777777777777776665554
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHH------
Q 006482 334 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ------ 407 (643)
Q Consensus 334 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlere------ 407 (643)
-... ...++.+|.|+.- --.+..+....||.+.++...-|.+--|.|-.|+..+|.+.-.|++.-=++..+
T Consensus 221 ~rer-~~~~~~Ie~l~~k--~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~ 297 (1072)
T KOG0979|consen 221 VRER-ERKKSKIELLEKK--KKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQR 297 (1072)
T ss_pred HHHH-HHHHHHHHHHHHh--ccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHH
Confidence 3322 2233344443221 112333444566666666555566666666666666655555555511111111
Q ss_pred ---------------HhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482 408 ---------------LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 408 ---------------le~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
+....+++.....+++++.+.+-+.|..|....+.--.+|..|.+.
T Consensus 298 ~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 298 ELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQET 358 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 1224445555556666666666665555555544444444444443
No 91
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.79 E-value=9.3 Score=45.22 Aligned_cols=172 Identities=20% Similarity=0.259 Sum_probs=103.2
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-------HhhHHHHHHHHHHHHHHHHH
Q 006482 280 FYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN-------QQRSVVNQLKSEMEKLQEEI 352 (643)
Q Consensus 280 F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yN-------qQ~~~v~qLk~~mE~Lq~Ei 352 (643)
|....++..-.+||..|+.=-..=-+|.|.|.....=.+.|-......+..-+ .-.......|.+|+++.-++
T Consensus 217 ~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL 296 (775)
T PF10174_consen 217 LQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLEL 296 (775)
T ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33445555566888888887777777888877755444444332222222111 12233344555566666665
Q ss_pred HHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhh
Q 006482 353 KVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF 432 (643)
Q Consensus 353 ~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l 432 (643)
.---.++.++.++...+--...+..++--.|=-++-..|.++-.|.++.=.|+-+|+.....+....+++..++.|+..+
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~ 376 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRL 376 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554444455556666666666677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006482 433 QSTIEALQEEKKMMQSKLR 451 (643)
Q Consensus 433 ~s~i~aLQEEKklLqskLR 451 (643)
...|+-|.+.-.....+|+
T Consensus 377 ~~Ei~~l~d~~d~~e~ki~ 395 (775)
T PF10174_consen 377 QGEIEDLRDMLDKKERKIN 395 (775)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7766666654433333333
No 92
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.75 E-value=1.9 Score=46.17 Aligned_cols=87 Identities=17% Similarity=0.275 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-------------------HHHHHHHHHHHHH
Q 006482 288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR-------------------SVVNQLKSEMEKL 348 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~-------------------~~v~qLk~~mE~L 348 (643)
++..|.+.+.|..++.-.|...+..-+.--..+-.++-.|-.+.+.+. ..+..++.+.++|
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL 145 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL 145 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666555556666666665555543 3457788999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhh
Q 006482 349 QEEIKVQLVELESFRNEYANVRLECN 374 (643)
Q Consensus 349 q~Ei~aQ~~~le~l~aErdaArle~~ 374 (643)
+.++++..-+.+-+..|||+++--|.
T Consensus 146 e~d~qs~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 146 ERDLQSLLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876543
No 93
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.73 E-value=5.4 Score=49.20 Aligned_cols=127 Identities=20% Similarity=0.265 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006482 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 366 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 366 (643)
+=|.-.--.|.+|+ ....|-+.++++|- |++++++..++...+++.|+.-+..|.
T Consensus 1164 ~CF~~WD~il~~L~---~rt~rl~~~A~~l~----------------~tGv~gay~s~f~~me~kl~~ir~il~------ 1218 (1758)
T KOG0994|consen 1164 ECFQTWDAILQELA---LRTHRLINRAKELK----------------QTGVLGAYASRFLDMEEKLEEIRAILS------ 1218 (1758)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHhh----------------hccCchhhHhHHHHHHHHHHHHHHHhc------
Confidence 34554445555554 34566677777663 556666666666555554332222221
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 006482 367 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 443 (643)
Q Consensus 367 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEK 443 (643)
..+-+-|-...|+.+.-.|+.++..++-.--..|..|..+..++....+.|++|++++..|..+...|.|.-
T Consensus 1219 -----~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~ 1290 (1758)
T KOG0994|consen 1219 -----APSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQL 1290 (1758)
T ss_pred -----CCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122223334444455555544443333334666666777777778888899888888888887777654
No 94
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.67 E-value=6.8 Score=47.34 Aligned_cols=125 Identities=18% Similarity=0.292 Sum_probs=81.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh-----------HHHHHHHHHHHHHhHHHH-----
Q 006482 330 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA-----------ADERAKILASEVIGLEEK----- 393 (643)
Q Consensus 330 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~a-----------A~ERak~LAaEVV~LEEk----- 393 (643)
-.-.-...+++|++.-|+|.+++..-.+.++.|++-.|||- .+.+ -.||.|.|--||-.||+-
T Consensus 404 elE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAl-GAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~E 482 (1243)
T KOG0971|consen 404 ELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAAL-GAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNE 482 (1243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334567778888888888888888888888888888862 2221 124555555555555431
Q ss_pred --HHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482 394 --ALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 455 (643)
Q Consensus 394 --~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~ 455 (643)
+---|--|+-|++|++-++--+.-+.+++.++.+---|..-||-..+|=-..||..|+....
T Consensus 483 QL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~d 546 (1243)
T KOG0971|consen 483 QLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTD 546 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00113345666667766666666667777776666566666777777888899999988755
No 95
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.66 E-value=9.7 Score=46.95 Aligned_cols=151 Identities=22% Similarity=0.296 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHH-----------HHHHHHHHHHHHHHHHHHH
Q 006482 290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVN-----------QLKSEMEKLQEEIKVQLVE 358 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~-----------qLk~~mE~Lq~Ei~aQ~~~ 358 (643)
.-|+.-||..-.+|+.+.-+++.++..-+.+-.|++.|...-+.-...+. .++.+++.++.++.--...
T Consensus 415 kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~ 494 (1293)
T KOG0996|consen 415 KKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQ 494 (1293)
T ss_pred HHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34556677777778888888888887777777777766665554433332 2334444445544444444
Q ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh-------hhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh
Q 006482 359 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS-------NELKLERQLENSQSEISSYKKKISSLEKERQD 431 (643)
Q Consensus 359 le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS-------~eLKlerele~l~~E~~s~~~qlsslekeR~~ 431 (643)
+-..++|.+-|+.+...-..|.-.+-.-|..|..+++..+- ...+++.++..++.|+....+.+..+-++-+.
T Consensus 495 ~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~ 574 (1293)
T KOG0996|consen 495 VNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERN 574 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHH
Confidence 55556666666666665555655566666666666665321 12233445555555666666666666666666
Q ss_pred hHHHHHHHH
Q 006482 432 FQSTIEALQ 440 (643)
Q Consensus 432 l~s~i~aLQ 440 (643)
+.+.++++.
T Consensus 575 ~~~~~~~~r 583 (1293)
T KOG0996|consen 575 LKSQLNKLR 583 (1293)
T ss_pred HHHHHHHHH
Confidence 666555555
No 96
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.55 E-value=5.5 Score=44.22 Aligned_cols=92 Identities=18% Similarity=0.362 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 416 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~ 416 (643)
.+++.+.++++++.+|..+.- +...|..++-.||..+-+++-.-...+.++..+...|+
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~---------------------~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~ 97 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQD---------------------QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 455666666666665544443 33445555556666666665555555666666666666
Q ss_pred HHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 006482 417 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 459 (643)
Q Consensus 417 s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~~gk~ 459 (643)
..++.+..++..+ ++++..|-.-|+.+-..|+-
T Consensus 98 ~~~~~l~~l~~q~----------r~qr~~La~~L~A~~r~g~~ 130 (420)
T COG4942 98 DLNARLNALEVQE----------REQRRRLAEQLAALQRSGRN 130 (420)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhccCC
Confidence 6666666655444 45556666666666555554
No 97
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.36 E-value=4.6 Score=43.52 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006482 288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLA 321 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa 321 (643)
....+.+.|.++.++...++..+...++..+.|-
T Consensus 198 ~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 198 QEGDYYSEISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777766666665555443
No 98
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.26 E-value=11 Score=48.18 Aligned_cols=162 Identities=25% Similarity=0.358 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHhhhH-------HHHHHHH
Q 006482 288 DFAALEQHIEDLTQEKFALQRSLEASRALS---------------------------ESLAAENSS-------LTDSYNQ 333 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~---------------------------esLa~ENsa-------Lt~~yNq 333 (643)
|-++|.|-++-+.++-..|+|.|-+.++-. -.|-.||.+ |.+.+|.
T Consensus 1175 e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~k 1254 (1822)
T KOG4674|consen 1175 ENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEK 1254 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777787777666544 123344444 4444555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHH--------HHHHHHHHHhHHHHHHHHhhhhhhhH
Q 006482 334 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER--------AKILASEVIGLEEKALRLRSNELKLE 405 (643)
Q Consensus 334 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ER--------ak~LAaEVV~LEEk~l~LRS~eLKle 405 (643)
..-.+.-|+..+.+|..+|..-.+++.-++.|-+.-+++.++--+- -+.|.+||-.|++++-. .+
T Consensus 1255 l~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~-------ke 1327 (1822)
T KOG4674|consen 1255 LNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEE-------KE 1327 (1822)
T ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 5555555566666666677777788888888888888888877665 56788888888877662 25
Q ss_pred HHHhhhHHHHHHHH----HHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCC
Q 006482 406 RQLENSQSEISSYK----KKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGS 456 (643)
Q Consensus 406 rele~l~~E~~s~~----~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~~ 456 (643)
+.++.+..++.+++ .++-++..+++.+...|+.+-.=+..|-.+++...+.
T Consensus 1328 ~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1328 NLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666665555 7777777778777777777766666666666555443
No 99
>PRK11281 hypothetical protein; Provisional
Probab=93.18 E-value=2.8 Score=51.05 Aligned_cols=15 Identities=20% Similarity=0.113 Sum_probs=7.6
Q ss_pred HHHHHHHHhHHHHHH
Q 006482 381 KILASEVIGLEEKAL 395 (643)
Q Consensus 381 k~LAaEVV~LEEk~l 395 (643)
..|-+|...|+.+..
T Consensus 195 ~~l~ae~~~l~~~~~ 209 (1113)
T PRK11281 195 VLLQAEQALLNAQND 209 (1113)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555543
No 100
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.08 E-value=13 Score=41.95 Aligned_cols=118 Identities=18% Similarity=0.319 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 006482 306 LQRSLEASRALSESLAAENSSLTDSYNQ---QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 382 (643)
Q Consensus 306 LqR~L~~s~~l~esLa~ENsaLt~~yNq---Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~ 382 (643)
+..-|...++.+..|..|-+.|..+|-= -...+..+..+++.++..+..-...++.-..=|-..+-...+..++-..
T Consensus 311 l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ 390 (560)
T PF06160_consen 311 LYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEE 390 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666521 2233444455555555444444444444444455555566667777777
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 006482 383 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 423 (643)
Q Consensus 383 LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qls 423 (643)
+..+...+-+.+..||.+|.+++..|..++.++..++|+++
T Consensus 391 ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 391 IEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888999888888888888888888887
No 101
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.07 E-value=13 Score=42.76 Aligned_cols=92 Identities=27% Similarity=0.283 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHH--HHhhh
Q 006482 296 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR-NEYA--NVRLE 372 (643)
Q Consensus 296 IeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~-aErd--aArle 372 (643)
.++-.+|--+|+..|+.-..-.+.+.++-..++..+-+....+.+.+...++++++++...-..+-+. +|.. ..+.-
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~ 402 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQAL 402 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445566667777777777777777888888877777777777777777777777766655444442 1222 22333
Q ss_pred hhhHHHHHHHHHHHH
Q 006482 373 CNAADERAKILASEV 387 (643)
Q Consensus 373 ~~aA~ERak~LAaEV 387 (643)
|.+..+|-..|+.+-
T Consensus 403 v~~s~~rl~~L~~qW 417 (594)
T PF05667_consen 403 VEASEQRLVELAQQW 417 (594)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555543
No 102
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.03 E-value=4.6 Score=46.08 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=48.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH-----hhhHHHHHHHHHHhh
Q 006482 532 MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEH-----QTQRLELLTAQNMAN 592 (643)
Q Consensus 532 mI~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~-----qTQRLELltsq~m~~ 592 (643)
+..-|.+|=.+|++++..--++|......+.+|++.=..|+-.|+. ++=+.|+..=+.|..
T Consensus 322 L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLe 387 (546)
T KOG0977|consen 322 LEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLE 387 (546)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhc
Confidence 4455667777888899999999999999999999888887777664 456779999899876
No 103
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.01 E-value=6.5 Score=47.77 Aligned_cols=135 Identities=27% Similarity=0.306 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 006482 310 LEASRALSESLAAENSSLTDSYNQ-------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 382 (643)
Q Consensus 310 L~~s~~l~esLa~ENsaLt~~yNq-------Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~ 382 (643)
.....+..+.|..|-+++-+++.+ |-..-..|+.+.++|+..++-...+++.+..|+.-++... .
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l--------~ 514 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATL--------K 514 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 334444555666666555554444 4444459999999999999999999999999998865443 3
Q ss_pred HHHHHHh----HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482 383 LASEVIG----LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 455 (643)
Q Consensus 383 LAaEVV~----LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~ 455 (643)
+.-+||. +|+++.+. ..++++.+++...+++.+-+++....+.=++=+..+.-++.+-..+-.-|-+..+
T Consensus 515 ~~e~ii~~~~~se~~l~~~---a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~ 588 (1041)
T KOG0243|consen 515 EEEEIISQQEKSEEKLVDR---ATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVA 588 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHh
Confidence 3344443 44444433 7788999999999999999999988887777778888887666544444444433
No 104
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.98 E-value=7.6 Score=41.59 Aligned_cols=63 Identities=21% Similarity=0.385 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006482 286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 355 (643)
Q Consensus 286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ 355 (643)
-.|+.|+-.++++ -.|.|+=+-+|-+.|-..|..|+.++..-...++...+.|.+|+-|+..-
T Consensus 61 y~Didavt~lLeE-------kerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~k 123 (306)
T PF04849_consen 61 YNDIDAVTRLLEE-------KERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMK 123 (306)
T ss_pred hhhHHHHHHHHHH-------HhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665 46889999999999999999999999888888888888888888886543
No 105
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.96 E-value=11 Score=37.59 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006482 286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDS 330 (643)
Q Consensus 286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~ 330 (643)
..-|.-+..---|.|..=+.|...|-...+-+..-...|..++..
T Consensus 8 e~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~e 52 (201)
T PF13851_consen 8 EKAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAE 52 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666777777777776666666555555555554443
No 106
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.96 E-value=12 Score=47.85 Aligned_cols=155 Identities=24% Similarity=0.330 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-----
Q 006482 288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF----- 362 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l----- 362 (643)
+|.-|--|.+.++.++--|.+.+.+=....+.|-++++.+-..==+---.+..++.++|.|+.++.-....+...
T Consensus 81 e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~ 160 (1822)
T KOG4674|consen 81 ELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLS 160 (1822)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666667777777777666666666666666652111111122222334444444443333333322
Q ss_pred ----------------HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhh----hhhhHHHHhhhHHHHHHHHHHh
Q 006482 363 ----------------RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSN----ELKLERQLENSQSEISSYKKKI 422 (643)
Q Consensus 363 ----------------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~----eLKlerele~l~~E~~s~~~ql 422 (643)
..++.+--++...--.-++-|..|.-.--++.+.+|-. ...|+..|.++......|..++
T Consensus 161 e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~ 240 (1822)
T KOG4674|consen 161 ELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKN 240 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333333333333445555666666677777777 7777888888888888888888
Q ss_pred hhHHHhhhhhHHHHHHHHHH
Q 006482 423 SSLEKERQDFQSTIEALQEE 442 (643)
Q Consensus 423 sslekeR~~l~s~i~aLQEE 442 (643)
..+...+.+|...|.-+..+
T Consensus 241 ~~l~q~~~eLs~~ie~~~~~ 260 (1822)
T KOG4674|consen 241 KSLKQQNEELSKKIESLNLE 260 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888887766655533
No 107
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.92 E-value=11 Score=43.51 Aligned_cols=153 Identities=17% Similarity=0.232 Sum_probs=81.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---hhhh
Q 006482 286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE---LESF 362 (643)
Q Consensus 286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~---le~l 362 (643)
.....-|++-|+-||+|=-.--++-.++-.--=.|-.|-+.|-.+|-+.-......+.+|+++++-+..+... +..-
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~ 86 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARD 86 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4456678888888888877666666666666666777777777777777777777777777776644332221 1111
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 006482 363 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 440 (643)
Q Consensus 363 ~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ 440 (643)
-.||.-+-+.--+|.|- .+---|..||..+-++|-.--.-+.|.+.+-...+.+..--..++.+|..|.+.|..+.
T Consensus 87 g~e~EesLLqESaakE~--~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~K 162 (772)
T KOG0999|consen 87 GEEREESLLQESAAKEE--YYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYK 162 (772)
T ss_pred chhhHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Confidence 22333333322233222 12223445555555444333333333333333333333333455666666666655443
No 108
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.88 E-value=8.4 Score=47.48 Aligned_cols=58 Identities=24% Similarity=0.273 Sum_probs=34.4
Q ss_pred HhhHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHhhHHH---HHHHHHhhhHHHHHHHHHH
Q 006482 533 IHNINALISELALEKEEL----VQALSSELAQSSKLKDLNNEL---SRKLEHQTQRLELLTAQNM 590 (643)
Q Consensus 533 I~nInaLisEla~Ere~l----~~aL~~es~~~s~Lk~lN~EL---srKLE~qTQRLELltsq~m 590 (643)
=++|+.-|.=|+...+++ +.+++.=.+........-.+| ..|+-...+.||-+-.++.
T Consensus 1073 ~~~i~e~i~~lE~~~~~l~~vd~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~Rl 1137 (1293)
T KOG0996|consen 1073 EDNINEKIALLEKRVEELREVDLGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRL 1137 (1293)
T ss_pred HhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345877777777766766 556665555555544444443 3455566666666666654
No 109
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=92.85 E-value=2.7 Score=43.29 Aligned_cols=6 Identities=17% Similarity=0.224 Sum_probs=3.2
Q ss_pred hCCCCC
Q 006482 454 SGSGKS 459 (643)
Q Consensus 454 ~~~gk~ 459 (643)
+-.|..
T Consensus 214 P~dG~V 219 (346)
T PRK10476 214 PFDGRV 219 (346)
T ss_pred CCCcEE
Confidence 555554
No 110
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.83 E-value=15 Score=43.15 Aligned_cols=115 Identities=23% Similarity=0.300 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhh----------hHHH
Q 006482 338 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK----------LERQ 407 (643)
Q Consensus 338 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLK----------lere 407 (643)
..++.+-+-.++.++..|-.++..+..+.++..-++..-..+.+..+.+|+.+.++...+ +.+.- +-.|
T Consensus 160 r~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~-~~~~qq~a~~~~ql~~~~e 238 (716)
T KOG4593|consen 160 RNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEER-ADHEQQNAELEQQLSLSEE 238 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhhhH
Confidence 334445555666777777777777777777777777777777777777777776665532 22211 1112
Q ss_pred HhhhH-------HHHHHHHHHhhhHHHhhh---hhHHHHHHHHHHHHHHHHHHHhh
Q 006482 408 LENSQ-------SEISSYKKKISSLEKERQ---DFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 408 le~l~-------~E~~s~~~qlsslekeR~---~l~s~i~aLQEEKklLqskLRka 453 (643)
++.+. .|....+++++...-+-. +.+.++.-||||.+.||++|+++
T Consensus 239 le~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~ 294 (716)
T KOG4593|consen 239 LEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRL 294 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 22211 222233333333222222 33558889999999999999887
No 111
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.82 E-value=7.3 Score=43.70 Aligned_cols=65 Identities=25% Similarity=0.269 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 006482 379 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 443 (643)
Q Consensus 379 Rak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEK 443 (643)
|-+.|+-|+-.|-.-+-+||+..=|+..+.....+.++.++-|+....+.|-.+-..+-..|+||
T Consensus 305 r~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ek 369 (502)
T KOG0982|consen 305 RDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEK 369 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56667777777777777777777777777777777777777777666666665555555555555
No 112
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=92.82 E-value=11 Score=37.38 Aligned_cols=134 Identities=20% Similarity=0.266 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 006482 306 LQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 373 (643)
Q Consensus 306 LqR~L~~s~~l~esLa~ENsaLt~~yNq------------Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~ 373 (643)
|.+++..-..-++.+|..+..+...... +......+...+++++...+.+...|+..+..|+++-.+.
T Consensus 58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~ 137 (236)
T cd07651 58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKI 137 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4444444444445555555544444432 2333445566677788888888888888888888877766
Q ss_pred hhHHHHHHH-HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH--HHHHH
Q 006482 374 NAADERAKI-LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ--EEKKM 445 (643)
Q Consensus 374 ~aA~ERak~-LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ--EEKkl 445 (643)
..+...... ...|+--++.|+.+...+--+.+++.+....+...++..-. .++-.+.+.|| ||.+.
T Consensus 138 e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~------~~~~~~~~~~Q~lEe~Ri 206 (236)
T cd07651 138 NSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWN------REWKAALDDFQDLEEERI 206 (236)
T ss_pred HHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 665554322 23566667777776666666666666555555555544333 34667888888 55543
No 113
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.76 E-value=7.3 Score=44.55 Aligned_cols=59 Identities=25% Similarity=0.316 Sum_probs=28.0
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006482 322 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV 387 (643)
Q Consensus 322 ~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEV 387 (643)
+|..-+.+++..--..+.-|+.+..+|+.+ |..++.++|+..+.-.++.-+.+.|--|+
T Consensus 155 Ae~~~~krr~~~le~e~~~Lk~en~rl~~~-------l~~~r~~ld~Etllr~d~~n~~q~Lleel 213 (546)
T KOG0977|consen 155 AEINTLKRRIKALEDELKRLKAENSRLREE-------LARARKQLDDETLLRVDLQNRVQTLLEEL 213 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444444444444444444444444444 44445555555544455555555544444
No 114
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.66 E-value=26 Score=41.36 Aligned_cols=39 Identities=23% Similarity=0.509 Sum_probs=20.6
Q ss_pred HHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482 414 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 452 (643)
Q Consensus 414 E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRk 452 (643)
....+..++..+.+++..+...++.+.++.+.++..+..
T Consensus 404 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 404 ALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555554444
No 115
>PF13514 AAA_27: AAA domain
Probab=92.58 E-value=14 Score=44.61 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006482 336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 368 (643)
Q Consensus 336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErda 368 (643)
..+..++.+++.+++++......++.+..+++.
T Consensus 801 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ 833 (1111)
T PF13514_consen 801 EERERLQEQLEELEEELEQAEEELEELEAELAE 833 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555544
No 116
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.55 E-value=9.5 Score=45.77 Aligned_cols=139 Identities=19% Similarity=0.229 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----------HHHHhhHHHHHH----HHHHHHHHHHHHHH--
Q 006482 292 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTD----------SYNQQRSVVNQL----KSEMEKLQEEIKVQ-- 355 (643)
Q Consensus 292 LqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~----------~yNqQ~~~v~qL----k~~mE~Lq~Ei~aQ-- 355 (643)
|+-...+||.+|..++-+|--|+.-++.+-+--..|-. +.-+-.--|..+ ...++.++++|.-|
T Consensus 321 lh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn 400 (1265)
T KOG0976|consen 321 LHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN 400 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455688999999999999999888877654433321 122222223333 33333444433333
Q ss_pred -HHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh----hhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh
Q 006482 356 -LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS----NELKLERQLENSQSEISSYKKKISSLEKERQ 430 (643)
Q Consensus 356 -~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS----~eLKlerele~l~~E~~s~~~qlsslekeR~ 430 (643)
..-++..+-.-.+|.-+...|-||+-.|-.+.+-++-+|-.+++ .+.+.++-++.-..=|.+.+...-+++|.|.
T Consensus 401 ~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrK 480 (1265)
T KOG0976|consen 401 HIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRK 480 (1265)
T ss_pred hhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcc
Confidence 23345557777899999999999999999999999999887753 5667777777766666777777666666653
No 117
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=92.54 E-value=11 Score=37.65 Aligned_cols=155 Identities=19% Similarity=0.235 Sum_probs=93.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006482 286 NEDFAALEQHIEDLTQEKFALQRSLEASRAL----SESLA-AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 360 (643)
Q Consensus 286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l----~esLa-~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le 360 (643)
..+-+.|++.|++...+--.+++.|++-..- .+.++ .--+.|..+.++.-..+.+++.++-.+..++..+....+
T Consensus 37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~ 116 (240)
T PF12795_consen 37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPE 116 (240)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 3455677888888888888888877766432 11111 012456777777777888888888888888877777777
Q ss_pred hhHHHHHHHhhhhhhHHHHHHH----------------HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh
Q 006482 361 SFRNEYANVRLECNAADERAKI----------------LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS 424 (643)
Q Consensus 361 ~l~aErdaArle~~aA~ERak~----------------LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlss 424 (643)
.+......++....++..+-.. |-+|+..|+.++..++-.-+-.-.--+=++..+.-+.+++.-
T Consensus 117 ~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~ 196 (240)
T PF12795_consen 117 RAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQR 196 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766666665433 344444444444433222111111111133444455666666
Q ss_pred HHHhhhhhHHHHHHHH
Q 006482 425 LEKERQDFQSTIEALQ 440 (643)
Q Consensus 425 lekeR~~l~s~i~aLQ 440 (643)
++...+.|+..|+...
T Consensus 197 l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 197 LQQQLQALQNLLNQKR 212 (240)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6667777777776655
No 118
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.45 E-value=4.4 Score=37.88 Aligned_cols=65 Identities=26% Similarity=0.314 Sum_probs=47.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH---HHHHHHHHhHHHHHHHH
Q 006482 333 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA---KILASEVIGLEEKALRL 397 (643)
Q Consensus 333 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa---k~LAaEVV~LEEk~l~L 397 (643)
-....|+.|+..+.+++-|+.+-...++.+..+|+.++.+....+.+. +..+.++-.|+.++..+
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l 80 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEEL 80 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999999777666655554 44444444444444433
No 119
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.44 E-value=9.4 Score=38.53 Aligned_cols=70 Identities=20% Similarity=0.347 Sum_probs=53.6
Q ss_pred hhhHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH-hhhHHHHHHHHHHhhhcc
Q 006482 526 PHDQMR-MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEH-QTQRLELLTAQNMANENI 595 (643)
Q Consensus 526 p~DQlR-mI~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~-qTQRLELltsq~m~~e~~ 595 (643)
|.++.+ +..+|.+.|++....=..|..+|........+..++|..-...|+. +.+..++..-+..+.+.+
T Consensus 172 ~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L 243 (264)
T PF06008_consen 172 PQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETL 243 (264)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 4599999999999999999999999999999999999988888874 444455555555554443
No 120
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.12 E-value=3.1 Score=42.35 Aligned_cols=105 Identities=25% Similarity=0.301 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 416 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~ 416 (643)
.|.++++++++.++++..+.-...-|..++ .-|.+-+..|+.+...+|+-..+|+..--+.+++-+.|..++.
T Consensus 13 rL~q~eee~~~a~~~L~e~e~~a~~Leek~-------k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~ 85 (246)
T PF00769_consen 13 RLRQMEEEMRRAQEALEESEETAEELEEKL-------KQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR 85 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444433333333333 3344455667777777777777777666665555555555555
Q ss_pred HHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHH
Q 006482 417 SYKKKISSLEKERQDFQSTIEALQEEKKMMQS 448 (643)
Q Consensus 417 s~~~qlsslekeR~~l~s~i~aLQEEKklLqs 448 (643)
.+...+..+..++..-......||.+-...+.
T Consensus 86 e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 86 EAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444444444444444444333333
No 121
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.03 E-value=5.9 Score=48.14 Aligned_cols=119 Identities=29% Similarity=0.401 Sum_probs=70.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHhhhhhhHH---------------------HHHHHHHHHHH
Q 006482 333 QQRSVVNQLKSEMEKLQEEIKVQLVELESF---RNEYANVRLECNAAD---------------------ERAKILASEVI 388 (643)
Q Consensus 333 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l---~aErdaArle~~aA~---------------------ERak~LAaEVV 388 (643)
+-...+..|+-++++|++|+.--+-.--.+ +.|.|+.+..+..++ |=-++|-+|--
T Consensus 202 ~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleeke 281 (1195)
T KOG4643|consen 202 RLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKE 281 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 334556666666777776665444333333 334444444444333 22233333334
Q ss_pred hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCC
Q 006482 389 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGS 456 (643)
Q Consensus 389 ~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~~ 456 (643)
-|||++..+|-. .+-..+..+|-.|++|+--++-+|.-.|.-++.|++|-.-||..=++.-++
T Consensus 282 MLeeQLq~lrar-----se~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~ 344 (1195)
T KOG4643|consen 282 MLEEQLQKLRAR-----SEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQ 344 (1195)
T ss_pred HHHHHHHHHHhc-----cccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444444433322 111235566788899999999999999999999999999998865555443
No 122
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=92.00 E-value=23 Score=41.79 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHHHHH----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006482 288 DFAALEQHIEDLTQEKFALQR--SLEASRA----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 355 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaLqR--~L~~s~~----------l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ 355 (643)
+.-.|-|++.+++++..+=.| ++.-... --+.+-..+.++-..-=--|+.....++..-+|-+|+.-.
T Consensus 401 E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ek 480 (698)
T KOG0978|consen 401 ETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREK 480 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455777777666555444 2222221 1112222233333333345667777778888888887777
Q ss_pred HHHhhhhHHHHHHHhhhhhhHHHHHH--------------HHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHH
Q 006482 356 LVELESFRNEYANVRLECNAADERAK--------------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK 421 (643)
Q Consensus 356 ~~~le~l~aErdaArle~~aA~ERak--------------~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~q 421 (643)
.-+.=.++.|++.+.+......+-=. .+-..|..||++...+-+.+=++.+++.-+..-++.++++
T Consensus 481 dd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~ 560 (698)
T KOG0978|consen 481 DDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKK 560 (698)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777778888887777766554322 2333455566666666666555555555555555555555
Q ss_pred hhhHHHhhhhhHHHH
Q 006482 422 ISSLEKERQDFQSTI 436 (643)
Q Consensus 422 lsslekeR~~l~s~i 436 (643)
+-.+.+...+|+.-+
T Consensus 561 ~~e~~~~~~~Lq~~~ 575 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIEL 575 (698)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555554444433
No 123
>PLN03188 kinesin-12 family protein; Provisional
Probab=91.98 E-value=3.1 Score=51.32 Aligned_cols=68 Identities=22% Similarity=0.289 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHH-HH
Q 006482 303 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER-AK 381 (643)
Q Consensus 303 KfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ER-ak 381 (643)
|-|||||++.--++.|+-|+ |-++||+.-..-....+=+.... ++||+....-|-.| ++
T Consensus 1099 ~~a~q~am~ghar~~e~ya~----l~ek~~~ll~~hr~i~egi~dvk----------------kaaakag~kg~~~~f~~ 1158 (1320)
T PLN03188 1099 KEAMQMAMEGHARMLEQYAD----LEEKHIQLLARHRRIQEGIDDVK----------------KAAARAGVRGAESKFIN 1158 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHhccccchHHHHH
Confidence 45778888887778877775 66777765544333333332211 23444444333333 78
Q ss_pred HHHHHHHhH
Q 006482 382 ILASEVIGL 390 (643)
Q Consensus 382 ~LAaEVV~L 390 (643)
+||||+-.|
T Consensus 1159 alaae~s~l 1167 (1320)
T PLN03188 1159 ALAAEISAL 1167 (1320)
T ss_pred HHHHHHHHH
Confidence 999998554
No 124
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.89 E-value=29 Score=40.15 Aligned_cols=229 Identities=24% Similarity=0.282 Sum_probs=118.5
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH-HHHHHh
Q 006482 318 ESLAAENSSLTDSYNQQRSVVNQLKS-------EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL-ASEVIG 389 (643)
Q Consensus 318 esLa~ENsaLt~~yNqQ~~~v~qLk~-------~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L-AaEVV~ 389 (643)
++|-..-.+|.++.|--.+-|+++++ .|++|+.||..-..+++.++.|+|..+--. +=|.+ ++||
T Consensus 262 eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I-----e~Q~iS~~dv-- 334 (581)
T KOG0995|consen 262 ESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI-----ELQGISGEDV-- 334 (581)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCCHHHH--
Confidence 34444455566666655555555543 456666666666666677777766643211 11122 2222
Q ss_pred HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCC-ccc
Q 006482 390 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKT-AAS 468 (643)
Q Consensus 390 LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~~gk~~~~~k~-~~~ 468 (643)
.+.+.+--+++|+|..+..+++++.+++=.++.+- +..++.++.--..+.+.+|++... ...+.++ +..
T Consensus 335 -----e~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~---~~~f~~le~~~~~~~~l~~~i~l~--~~~~~~n~~~~ 404 (581)
T KOG0995|consen 335 -----ERMNLERNKLKRELNKIQSELDRLSKEVWELKLEI---EDFFKELEKKFIDLNSLIRRIKLG--IAENSKNLERN 404 (581)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccCCcC
Confidence 22333444556666666666666666665543332 235566665556667777776543 1111111 000
Q ss_pred ccccccccccccccCccccCCCCCcccCCCCCCCCCCCCCCCCccccccccCccccchhhHHHH------HhhHHHHHHH
Q 006482 469 TVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRM------IHNINALISE 542 (643)
Q Consensus 469 ~kDASTSTdDLai~d~~~~sSn~e~~~s~s~~~~~~~~~P~~P~~G~~~l~~~~vsIp~DQlRm------I~nInaLisE 542 (643)
...+.+-.-|+ . .+-.|++-+- +.+-.-.|-.-++.. ++|.+++|.|
T Consensus 405 pe~~~~~~~d~-----------------k------~~V~~~l~el----~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E 457 (581)
T KOG0995|consen 405 PERAATNGVDL-----------------K------SYVKPLLKEL----LDEISEELHEAENELETLQEHFSNKASTIEE 457 (581)
T ss_pred CccCccccccc-----------------h------hHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111111111 0 0001110000 000001222233322 5788888888
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhHHHHH-------HHHHhhhHHHHHHHHHH
Q 006482 543 LALEKEELVQALSSELAQSSKLKDLNNELSR-------KLEHQTQRLELLTAQNM 590 (643)
Q Consensus 543 la~Ere~l~~aL~~es~~~s~Lk~lN~ELsr-------KLE~qTQRLELltsq~m 590 (643)
+-.....+---|....+.|-..+..+-|+.. +||-+.+.|.|..=+.|
T Consensus 458 ~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m 512 (581)
T KOG0995|consen 458 KIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSM 512 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888765 47777777766655555
No 125
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.79 E-value=7.3 Score=39.76 Aligned_cols=50 Identities=26% Similarity=0.393 Sum_probs=24.8
Q ss_pred HHHhhHHHHHHHHHH----HHHHHHHHHHHHHHH--hHHHHHhhHHHHHHHHHhhhHHH
Q 006482 531 RMIHNINALISELAL----EKEELVQALSSELAQ--SSKLKDLNNELSRKLEHQTQRLE 583 (643)
Q Consensus 531 RmI~nInaLisEla~----Ere~l~~aL~~es~~--~s~Lk~lN~ELsrKLE~qTQRLE 583 (643)
+|=+-+.+|-+||+. +|...+..|+.+--+ .++.+.|.. -+.+.+.||+.
T Consensus 186 ~lq~QL~~L~~EL~~~kde~k~T~~D~~h~en~~~g~~ky~tl~~---i~~g~tk~ri~ 241 (246)
T PF00769_consen 186 RLQEQLKELKSELEQLKDEEKQTQLDIIHAENVRAGRDKYKTLRQ---IRQGNTKQRID 241 (246)
T ss_dssp HHHHHHHHHHHHHHTTB-CCG--HHHHHHHHHHHTT--HHHHHHH---HT-S-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHhchhHHHHHHH---HhcCCHHHHHH
Confidence 444555667777765 457777777776433 234444432 34455666553
No 126
>PRK01156 chromosome segregation protein; Provisional
Probab=91.62 E-value=32 Score=40.12 Aligned_cols=70 Identities=11% Similarity=0.175 Sum_probs=34.7
Q ss_pred HHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHH----------HHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 006482 356 LVELESFRNEYANVRLECNAADERAKILASEVIGLEE----------KALRLRSNELKLERQLENSQSEISSYKKKISSL 425 (643)
Q Consensus 356 ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEE----------k~l~LRS~eLKlerele~l~~E~~s~~~qlssl 425 (643)
...++....++...+..+....+....+..++-.|+. ++.+++..--+++.+++.+..++..++.++..+
T Consensus 628 ~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l 707 (895)
T PRK01156 628 ANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEIL 707 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666666666665555555544433 334444444444444444444444444444433
No 127
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.58 E-value=26 Score=41.69 Aligned_cols=96 Identities=26% Similarity=0.335 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH---HHHHHHHHHH-HHHHHHHHHHHHh--------
Q 006482 292 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEME-KLQEEIKVQLVEL-------- 359 (643)
Q Consensus 292 LqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~---~v~qLk~~mE-~Lq~Ei~aQ~~~l-------- 359 (643)
++..|+-|+-|+-.--..+..+|.+++.|-..|-++-..||.-.+ .-+.||.|-. +-++.+..|...|
T Consensus 521 ~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~E 600 (961)
T KOG4673|consen 521 LQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKE 600 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777766677777777888877777777777776655 2344442211 1111111111111
Q ss_pred -------hhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006482 360 -------ESFRNEYANVRLECNAADERAKILASEV 387 (643)
Q Consensus 360 -------e~l~aErdaArle~~aA~ERak~LAaEV 387 (643)
.-|+.|..-.+.+..+|.-|+..|.-+|
T Consensus 601 q~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 601 QQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2346666666667777777776665554
No 128
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=91.57 E-value=10 Score=39.52 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh--hhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 006482 336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL--ECNAADERAKILASEVIGLEEKALRLR 398 (643)
Q Consensus 336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArl--e~~aA~ERak~LAaEVV~LEEk~l~LR 398 (643)
..+.-++.+++++++++..-..+|..|+.+..-.-. ......+-...|-.+.+.+|.++..+|
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~ 234 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLR 234 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666555433211 112223333444444444444444443
No 129
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=91.54 E-value=1.4 Score=38.99 Aligned_cols=67 Identities=18% Similarity=0.287 Sum_probs=50.3
Q ss_pred hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482 389 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 455 (643)
Q Consensus 389 ~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~ 455 (643)
.||+||.+.=----=|+-|+++++.+-..+...+..+..-|..|....+.|++|...-|.|||...+
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777776553333334566666766666677777777777888999999999999999999998765
No 130
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=91.40 E-value=17 Score=36.41 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 006482 305 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 373 (643)
Q Consensus 305 aLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v-----------~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~ 373 (643)
.|..++..-..-++.+|.-+..|.++.+.....+ ..+...|+.++...+.+...+.-.+.-|.++-.+.
T Consensus 57 sl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~ 136 (239)
T cd07647 57 TLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREK 136 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555666666666655555543333 34456666666666666777777777777765555
Q ss_pred hhHHHH---HHHH--HHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 006482 374 NAADER---AKIL--ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 440 (643)
Q Consensus 374 ~aA~ER---ak~L--AaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ 440 (643)
..|... ++.. ..|+--++.|+.+.+..--+.+.+.......+..++.+-. .++..+.+.+|
T Consensus 137 e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~------~~~~~~~~~~Q 202 (239)
T cd07647 137 DKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWE------SEHATACQVFQ 202 (239)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 554322 2221 2455566666665555555544444444333333333222 23555677777
No 131
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.38 E-value=24 Score=38.08 Aligned_cols=150 Identities=21% Similarity=0.365 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006482 290 AALEQHIEDLTQEKFALQRSLEASRA-----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 358 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~-----------l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~ 358 (643)
||++.|=+-.|.+ --|.++++++++ =+-.|-+.|+-|+.....--+.++-|+-++-..+.-+.---++
T Consensus 102 aAi~d~dqsq~sk-rdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~ 180 (305)
T PF14915_consen 102 AAIQDHDQSQTSK-RDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLA 180 (305)
T ss_pred HHHhhHHHHHhhH-HHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443 345666666665 3446778888899888888888899999998888888888889
Q ss_pred hhhhHHHHHHHhhhhhhH-----HHHHH--HHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh
Q 006482 359 LESFRNEYANVRLECNAA-----DERAK--ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD 431 (643)
Q Consensus 359 le~l~aErdaArle~~aA-----~ERak--~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~ 431 (643)
|+.+..+..-++....+. .|+++ ..-+-=-.||||+-++-|.-+=|+.||+.++.+...-++-|--+ -..
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vini---Q~~ 257 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINI---QDQ 257 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHH
Confidence 998876666655443332 23332 23334457899999999999999999999998888777777665 334
Q ss_pred hHHHHHHHHHHH
Q 006482 432 FQSTIEALQEEK 443 (643)
Q Consensus 432 l~s~i~aLQEEK 443 (643)
++.+|..||-|.
T Consensus 258 f~d~~~~L~ae~ 269 (305)
T PF14915_consen 258 FQDIVKKLQAES 269 (305)
T ss_pred HHHHHHHHHHHH
Confidence 666778877443
No 132
>PRK11519 tyrosine kinase; Provisional
Probab=91.00 E-value=10 Score=43.73 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=9.8
Q ss_pred ccCCCCCcccccccCCC
Q 006482 58 KISPQNSVSTLFQSKPS 74 (643)
Q Consensus 58 ~is~q~s~~~~~q~~~s 74 (643)
..+|.=.+++..|+++.
T Consensus 51 ~~~PvY~a~a~l~Ie~~ 67 (719)
T PRK11519 51 FATPIYSADALVQIEQN 67 (719)
T ss_pred hCCceeeeeEEEEEccC
Confidence 34456666666665544
No 133
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.95 E-value=40 Score=39.92 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=19.8
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 006482 318 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 349 (643)
Q Consensus 318 esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq 349 (643)
+.|..+.+++.+++......+.++.+.-.+|+
T Consensus 228 ~~l~~e~e~l~~~~~el~~~~~~~~~~~~~l~ 259 (908)
T COG0419 228 EELEQEIEALEERLAELEEEKERLEELKARLL 259 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677777777777776666666666333333
No 134
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=90.88 E-value=0.069 Score=60.60 Aligned_cols=74 Identities=26% Similarity=0.394 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHH---HhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 006482 374 NAADERAKILASEVIGLEEKALR---LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 447 (643)
Q Consensus 374 ~aA~ERak~LAaEVV~LEEk~l~---LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLq 447 (643)
..-.|+-..|---.+.||+.+.+ +|+..-.+++++..+..++....+++..++.+...|+..+++|++||..|.
T Consensus 335 k~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~ 411 (713)
T PF05622_consen 335 KELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQ 411 (713)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555554443 233333334444444444444444444455555555555555555555443
No 135
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=90.80 E-value=43 Score=40.01 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHHHHHHhhhccccCCCC
Q 006482 541 SELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPD 601 (643)
Q Consensus 541 sEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELltsq~m~~e~~~a~~~d 601 (643)
.-|+.=|..|..+=...-++-..|+.+|-+|.|||++...|-|-++.+-=+.--++.|+|.
T Consensus 587 qqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE 647 (961)
T KOG4673|consen 587 QQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIE 647 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Confidence 3333334444444444455667899999999999999999999888765544444455553
No 136
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=90.74 E-value=34 Score=41.46 Aligned_cols=65 Identities=20% Similarity=0.184 Sum_probs=47.1
Q ss_pred cCccccchhhHHHHHhhHHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHHHHHHhh
Q 006482 519 EGLAVNIPHDQMRMIHNINALISELALE------KEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMAN 592 (643)
Q Consensus 519 ~~~~vsIp~DQlRmI~nInaLisEla~E------re~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELltsq~m~~ 592 (643)
+|+----.+.+=.||+-|.+|+..++.. -+.|-.++.-+..+|..|++ |.|.-+|++--+.+.+-
T Consensus 451 egsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkE---------eiQethldyR~els~lA 521 (1265)
T KOG0976|consen 451 EGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKE---------EIQETHLDYRSELSELA 521 (1265)
T ss_pred hhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHh
Confidence 3333455689999999999999988754 46677777777888888876 45666777766666544
No 137
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.71 E-value=16 Score=35.10 Aligned_cols=78 Identities=24% Similarity=0.342 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHH
Q 006482 338 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 415 (643)
Q Consensus 338 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~ 415 (643)
..-|++.++-|++++..-.-.++.+-.+-.+++.+|..-.+.-..++.+.-.|+..+-.+|+.--.+.++++..+..|
T Consensus 19 ~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 19 KDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred HhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555566666555555556666666666666666655554444444443333
No 138
>PRK11281 hypothetical protein; Provisional
Probab=90.65 E-value=52 Score=40.74 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHH
Q 006482 339 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS 385 (643)
Q Consensus 339 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAa 385 (643)
.++..++.+.|+++...-..+......-.+||..-.+|..|.+.+-.
T Consensus 131 ~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~ 177 (1113)
T PRK11281 131 AQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRN 177 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444333333444444444455555555555554443
No 139
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.55 E-value=22 Score=36.21 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=12.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Q 006482 532 MIHNINALISELALEKEELVQAL 554 (643)
Q Consensus 532 mI~nInaLisEla~Ere~l~~aL 554 (643)
.|.-+..+.-||-.|+.+|-.-|
T Consensus 166 ~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 166 TIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556655555554443
No 140
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.49 E-value=16 Score=36.73 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006482 307 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 368 (643)
Q Consensus 307 qR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErda 368 (643)
.+.=.++++-.+.+++|-..|.+.|-+...++..|+...++++..+..|..+++.+..+.+.
T Consensus 34 ~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 34 VQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677778888888888888888888888888888888888888888888888666555
No 141
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=90.49 E-value=9.9 Score=37.04 Aligned_cols=32 Identities=38% Similarity=0.614 Sum_probs=27.6
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482 424 SLEKERQDFQSTIEALQEEKKMMQSKLRKASG 455 (643)
Q Consensus 424 slekeR~~l~s~i~aLQEEKklLqskLRka~~ 455 (643)
....++++|+.-|+.||++-|.|+.+++..+.
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 56788899999999999999999998877654
No 142
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.45 E-value=22 Score=40.73 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 006482 436 IEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 436 i~aLQEEKklLqskLRka 453 (643)
+++.++--..|..|+.++
T Consensus 385 ~~~~~~~Y~~ll~r~~e~ 402 (754)
T TIGR01005 385 AAAKRQLYESYLTNYRQA 402 (754)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334455555554
No 143
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.43 E-value=15 Score=34.02 Aligned_cols=30 Identities=33% Similarity=0.598 Sum_probs=21.0
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482 423 SSLEKERQDFQSTIEALQEEKKMMQSKLRK 452 (643)
Q Consensus 423 sslekeR~~l~s~i~aLQEEKklLqskLRk 452 (643)
..++++...+..-++.|.+.=++|+..|-.
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555556667777888888889887743
No 144
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=90.41 E-value=23 Score=36.21 Aligned_cols=116 Identities=21% Similarity=0.224 Sum_probs=75.5
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHH-----HHHHh
Q 006482 315 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA-----SEVIG 389 (643)
Q Consensus 315 ~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LA-----aEVV~ 389 (643)
.|++.|-.+-..|..=.+.|......+...|+++|.-...+...|+.-+..|.++-.+...|......+- .|+--
T Consensus 78 ~ia~~L~~~~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK 157 (242)
T cd07671 78 QLAGMLREELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEK 157 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 4666676666667777788888999999999999999999999999999888887777666643221111 33434
Q ss_pred HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh----hhHHHHHHHH
Q 006482 390 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ----DFQSTIEALQ 440 (643)
Q Consensus 390 LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~----~l~s~i~aLQ 440 (643)
++.|+.+.+.+--+. ...|+.-|..+.+-|. ++..+.+.+|
T Consensus 158 ~~~K~~k~~~~~~~a----------~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q 202 (242)
T cd07671 158 SQNKAKQCRDAATEA----------ERVYKQNIEQLDKARTEWETEHILTCEVFQ 202 (242)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333333 3445555555554443 3556777777
No 145
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=90.33 E-value=9.8 Score=31.89 Aligned_cols=56 Identities=14% Similarity=0.275 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 006482 378 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 440 (643)
Q Consensus 378 ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ 440 (643)
........-+..|+..+... +.+++.+..++..++..+..+..++.-+..+.+.-+
T Consensus 45 ~~~~~~~~~~~~l~~~i~~~-------~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~ 100 (123)
T PF02050_consen 45 AQLRNYQRYISALEQAIQQQ-------QQELERLEQEVEQAREELQEARRERKKLEKLKERRR 100 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555544 444445555555555555555555555555544433
No 146
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.13 E-value=37 Score=38.17 Aligned_cols=118 Identities=25% Similarity=0.291 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 006482 307 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 386 (643)
Q Consensus 307 qR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE 386 (643)
...|+..+..-+....|-..|.....-....+...|.++.++++....--..+.+|..|....+.+...+.+.-...-..
T Consensus 287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~ 366 (522)
T PF05701_consen 287 KKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEA 366 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhh
Confidence 34556666666666666667776666677777777777777777766666667777777777776665544333322223
Q ss_pred HHhHHHHHHHHhhh-------hhhhHHHHhhhHHHHHHHHHHhhh
Q 006482 387 VIGLEEKALRLRSN-------ELKLERQLENSQSEISSYKKKISS 424 (643)
Q Consensus 387 VV~LEEk~l~LRS~-------eLKlerele~l~~E~~s~~~qlss 424 (643)
+..|-..+.++.+. .-..+.++..++.+++.++..+..
T Consensus 367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t 411 (522)
T PF05701_consen 367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKT 411 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333 333344444444444444444444
No 147
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.04 E-value=31 Score=37.24 Aligned_cols=119 Identities=24% Similarity=0.397 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh------h--hhhHHHHHHHHHHHHHhHHHHHHHH-------h
Q 006482 334 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL------E--CNAADERAKILASEVIGLEEKALRL-------R 398 (643)
Q Consensus 334 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArl------e--~~aA~ERak~LAaEVV~LEEk~l~L-------R 398 (643)
|-..|+.|+..+.+|+.+..+....|+.|+.|------ + .|--.-|.-.|++|=-.|++++-+- |
T Consensus 133 qE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~ 212 (310)
T PF09755_consen 133 QEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPR 212 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcc
Confidence 33445556666666665555555555555443211000 0 1222334455555555555554420 0
Q ss_pred ---------hhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh----hHHHHHHHHHHHHHHHHHHHh
Q 006482 399 ---------SNELKLERQLENSQSEISSYKKKISSLEKERQD----FQSTIEALQEEKKMMQSKLRK 452 (643)
Q Consensus 399 ---------S~eLKlerele~l~~E~~s~~~qlsslekeR~~----l~s~i~aLQEEKklLqskLRk 452 (643)
..-=++...+..|+.|+.++++++...+++... ...-...+++|-+.||-+|+.
T Consensus 213 d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~ 279 (310)
T PF09755_consen 213 DTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQR 279 (310)
T ss_pred hHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001234445557778888888888776665532 112234566666788877764
No 148
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.98 E-value=8.7 Score=38.56 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006482 290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 351 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 351 (643)
+..|+-|+++..||-.|+..+.+-.+=.+.|-..|..+.+....|...+.+|+.+++.++..
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999998888888776654
No 149
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=89.96 E-value=25 Score=36.05 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=61.0
Q ss_pred HHHHHHHHhhhHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHH
Q 006482 315 ALSESLAAENSSLTDSYNQQRS--VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 392 (643)
Q Consensus 315 ~l~esLa~ENsaLt~~yNqQ~~--~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEE 392 (643)
..+++|-..-..+++.+|.-+| .|.+||..++.++..+++-...+...+..|+.|... --..=.||-.|=.
T Consensus 9 ~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~-------Rs~sQrEvn~LLq 81 (207)
T PF05546_consen 9 FYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQ-------RSSSQREVNELLQ 81 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 4556666666778888998876 567777777777776666666666666666655443 2233346655533
Q ss_pred H-----------HHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh
Q 006482 393 K-----------ALRLRSNELKLERQLENSQSEISSYKKKISS 424 (643)
Q Consensus 393 k-----------~l~LRS~eLKlerele~l~~E~~s~~~qlss 424 (643)
| -..|-.++=-.++..+.++.++..++.+++.
T Consensus 82 RK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~ 124 (207)
T PF05546_consen 82 RKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVEE 124 (207)
T ss_pred cccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2 3334333444455555566555555555553
No 150
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.81 E-value=31 Score=39.96 Aligned_cols=93 Identities=24% Similarity=0.326 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006482 290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 369 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaA 369 (643)
-.|+.-|+.|-.|+-.|..-|+.+.+ +|+.|..-..+|...+.+|...+++++.+..-+..-|+.+..++..+
T Consensus 83 ~~Lq~E~~~L~kElE~L~~qlqaqv~-------~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~ 155 (617)
T PF15070_consen 83 QQLQAEAEHLRKELESLEEQLQAQVE-------NNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATA 155 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 46777777777777777766665544 45555555567888888888888888887766666677776665542
Q ss_pred hhhhhhHHHHHHHHHHHHHhHHHH
Q 006482 370 RLECNAADERAKILASEVIGLEEK 393 (643)
Q Consensus 370 rle~~aA~ERak~LAaEVV~LEEk 393 (643)
-.|-..-+.|=..+..|+++
T Consensus 156 ----SRAlsQN~eLK~QL~Elq~~ 175 (617)
T PF15070_consen 156 ----SRALSQNRELKEQLAELQDA 175 (617)
T ss_pred ----HHHHHhHHHHHHHHHHHHHH
Confidence 22333334555555555553
No 151
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.74 E-value=37 Score=41.79 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006482 308 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV 387 (643)
Q Consensus 308 R~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEV 387 (643)
|.|--.+.-.+.|-..-.+....-++-.+++....++|+++..+|..--..|..++.|-.-+..+.+.+...--.|--++
T Consensus 230 rEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~ 309 (1200)
T KOG0964|consen 230 RELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKI 309 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 44555555556666666666666666677777777778777777777777778888877777777777776665666666
Q ss_pred HhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh-hCCCCC
Q 006482 388 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA-SGSGKS 459 (643)
Q Consensus 388 V~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka-~~~gk~ 459 (643)
-.|-+++..-+-+.=.....++.+.++|..-+..++.++..+.+++..=+.+..--+.|+.+.|-. +-+|+.
T Consensus 310 kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~ 382 (1200)
T KOG0964|consen 310 KDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRY 382 (1200)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 677776665554444455677788888888899999988888887777666666666666666665 445554
No 152
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=89.50 E-value=8.9 Score=42.83 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=9.1
Q ss_pred HHHHHhhhHHHHHHHHhh
Q 006482 318 ESLAAENSSLTDSYNQQR 335 (643)
Q Consensus 318 esLa~ENsaLt~~yNqQ~ 335 (643)
|-|++-|.+|.+.|-+|-
T Consensus 13 qr~~~~~~~laq~~k~~s 30 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQS 30 (459)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 445555555555554443
No 153
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.44 E-value=25 Score=35.19 Aligned_cols=118 Identities=18% Similarity=0.262 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q 006482 310 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIG 389 (643)
Q Consensus 310 L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~ 389 (643)
|.-.+.-.+.|.-||-.|-.-.-.|...++...+.=..|-+-|..+.-++-+++..+-.++..+.++.-+-+..-+|+.-
T Consensus 21 l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k 100 (194)
T PF15619_consen 21 LAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLK 100 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445678889999999888898889888888788888888888899999999999999999999999999999999
Q ss_pred HHHHHHHHhh--------hhhhhHHHHhhhHHHHHHHHHHhhhHHH
Q 006482 390 LEEKALRLRS--------NELKLERQLENSQSEISSYKKKISSLEK 427 (643)
Q Consensus 390 LEEk~l~LRS--------~eLKlerele~l~~E~~s~~~qlsslek 427 (643)
+++.+..|+- +.-+|.++|+.+..++..-++++..|++
T Consensus 101 ~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 101 TKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988754 1234556666666666666666666554
No 154
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.35 E-value=3.1 Score=36.70 Aligned_cols=67 Identities=22% Similarity=0.313 Sum_probs=47.1
Q ss_pred hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482 389 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 455 (643)
Q Consensus 389 ~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~ 455 (643)
.||+|+.+.=-----|+-|+++|+.+--++...++.+..-|..|+...+.|++|-..-|.|||...+
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677766543222224556666666666666667777777778888888999999999999997754
No 155
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=89.20 E-value=0.11 Score=60.56 Aligned_cols=127 Identities=20% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh
Q 006482 320 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 399 (643)
Q Consensus 320 La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS 399 (643)
|..|.+.++-..-.+...+.+|.....+|..++......++.+..|+|+++.+|.. +..||..|...+-.++.
T Consensus 354 L~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~-------~~te~~~Lk~~lee~~e 426 (859)
T PF01576_consen 354 LQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARE-------LETELFKLKNELEELQE 426 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHhhhHHHHH
Confidence 44455555555555555555555555555566666666667777777777766654 45555555555555555
Q ss_pred hhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482 400 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 400 ~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
..-.++|+...|..||.-+..++....+..++|.-.+..|..|+.-|+..|..+
T Consensus 427 ~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~ 480 (859)
T PF01576_consen 427 QLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEA 480 (859)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666666655555555555555555555555555444
No 156
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=89.12 E-value=28 Score=35.43 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH--------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006482 305 ALQRSLEASRALSESLAAENSSLTDSYNQQRS--------------------VVNQLKSEMEKLQEEIKVQLVELESFRN 364 (643)
Q Consensus 305 aLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~--------------------~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a 364 (643)
.|..++..-..=++.+|..+..|.++...+-. ....+...++..|..+..+...|+..+.
T Consensus 61 sl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~kaKk 140 (258)
T cd07655 61 TLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKAKK 140 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45555555555666666666666666555422 2334445555566666666677777777
Q ss_pred HHHHHhhhhhhHHHHHHHH-------HHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh----hhH
Q 006482 365 EYANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ----DFQ 433 (643)
Q Consensus 365 ErdaArle~~aA~ERak~L-------AaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~----~l~ 433 (643)
-|..+=.+...|....... ..||--++.|+.+....--+.+ ..|..+|..+.+.+. +|-
T Consensus 141 ~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~----------~~Y~~~l~~~n~~~~~y~~~m~ 210 (258)
T cd07655 141 AYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTK----------DKYEKALEDLNKYNPRYMEDME 210 (258)
T ss_pred HHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhHHHHHHHH
Confidence 7777655555555544322 2455555555554433333333 445555555554443 466
Q ss_pred HHHHHHH--HHHH
Q 006482 434 STIEALQ--EEKK 444 (643)
Q Consensus 434 s~i~aLQ--EEKk 444 (643)
.+++.|| ||++
T Consensus 211 ~~~~~~Q~lEe~R 223 (258)
T cd07655 211 QVFDKCQEFEEKR 223 (258)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888 5553
No 157
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=89.08 E-value=9.6 Score=45.13 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=33.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 006482 363 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 442 (643)
Q Consensus 363 ~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEE 442 (643)
.+|..+|++.-.--.|-++.|..-|-.-+.-.++.|+..|. ..+.|-.+.+++++++..+.+++..|+.-++.|.-|
T Consensus 176 naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle---~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e 252 (916)
T KOG0249|consen 176 NAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALE---DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGE 252 (916)
T ss_pred HHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33434444333333344444444444333334444444432 122344444555555555555555555555444433
Q ss_pred H
Q 006482 443 K 443 (643)
Q Consensus 443 K 443 (643)
-
T Consensus 253 ~ 253 (916)
T KOG0249|consen 253 L 253 (916)
T ss_pred H
Confidence 3
No 158
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=88.96 E-value=21 Score=36.15 Aligned_cols=8 Identities=25% Similarity=0.036 Sum_probs=4.3
Q ss_pred hhCCCCCc
Q 006482 453 ASGSGKSI 460 (643)
Q Consensus 453 a~~~gk~~ 460 (643)
++..|...
T Consensus 209 AP~~G~V~ 216 (334)
T TIGR00998 209 APFDGYVA 216 (334)
T ss_pred cCCCcEEE
Confidence 35666653
No 159
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=88.84 E-value=48 Score=38.38 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=25.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHH
Q 006482 533 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLEL 584 (643)
Q Consensus 533 I~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLEL 584 (643)
++-|..+|.-+.-++++|-+.|.+= ++|.+.+...+.+|++
T Consensus 490 t~RIlEIv~NI~KQk~eI~KIl~DT-----------r~lQkeiN~l~gkL~R 530 (594)
T PF05667_consen 490 TRRILEIVKNIRKQKEEIEKILSDT-----------RELQKEINSLTGKLDR 530 (594)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHh
Confidence 4566667777778888888777653 3344444455555554
No 160
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.83 E-value=5.1 Score=40.26 Aligned_cols=10 Identities=10% Similarity=0.086 Sum_probs=4.1
Q ss_pred hHHHHHHHHH
Q 006482 432 FQSTIEALQE 441 (643)
Q Consensus 432 l~s~i~aLQE 441 (643)
|...++++|+
T Consensus 158 l~~~~~~~~~ 167 (206)
T PRK10884 158 ANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 161
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=88.80 E-value=42 Score=41.50 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHH
Q 006482 377 DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 439 (643)
Q Consensus 377 ~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aL 439 (643)
..+-..|-+|...|+.++..++-.-+-..+-.+=++...+-+++++..++++-+.||..|+..
T Consensus 172 ~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~k 234 (1109)
T PRK10929 172 QAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQ 234 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677777777777666544443333333344444445566666666666666666653
No 162
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.51 E-value=37 Score=36.06 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006482 335 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 368 (643)
Q Consensus 335 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErda 368 (643)
.....-|.++++++++++.....++..|+.+..-
T Consensus 170 ~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 170 QKAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3456667777777777777777777777777644
No 163
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=88.33 E-value=0.14 Score=58.15 Aligned_cols=18 Identities=44% Similarity=0.691 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 006482 436 IEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 436 i~aLQEEKklLqskLRka 453 (643)
++-|.||++-|+.||.++
T Consensus 283 ~elLeEe~~sLq~kl~~~ 300 (722)
T PF05557_consen 283 VELLEEEKRSLQRKLERL 300 (722)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555554
No 164
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=88.22 E-value=3.4 Score=40.69 Aligned_cols=70 Identities=23% Similarity=0.395 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 006482 304 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 383 (643)
Q Consensus 304 faLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L 383 (643)
++++..|.......+.|..||.+|.+.-.+....+.+|+.+++.|+.+ +..+..+|.. .-..++||+.|
T Consensus 86 I~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~-------~~~~~eDY~~----L~~Im~RARkl 154 (161)
T TIGR02894 86 ISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQR-------LSTIEEDYQT----LIDIMDRARKL 154 (161)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH----HHHHHHHHHHH
Confidence 456666777777788899999998876666555666666555555554 5677777776 35689999998
Q ss_pred H
Q 006482 384 A 384 (643)
Q Consensus 384 A 384 (643)
+
T Consensus 155 ~ 155 (161)
T TIGR02894 155 A 155 (161)
T ss_pred H
Confidence 7
No 165
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=88.20 E-value=70 Score=38.85 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHH
Q 006482 288 DFAALEQHIEDL 299 (643)
Q Consensus 288 ~faaLqqhIeDL 299 (643)
++..+++.++++
T Consensus 531 ~l~~~~~~~~~~ 542 (1047)
T PRK10246 531 RLDALEKEVKKL 542 (1047)
T ss_pred HHHHHHHHHHHH
Confidence 455555555444
No 166
>PRK01156 chromosome segregation protein; Provisional
Probab=88.18 E-value=59 Score=38.03 Aligned_cols=9 Identities=11% Similarity=-0.057 Sum_probs=4.3
Q ss_pred HHHHHHHhc
Q 006482 622 VLGWIMKLF 630 (643)
Q Consensus 622 vlgwimklf 630 (643)
+-.||+.|.
T Consensus 875 ~~d~ii~~~ 883 (895)
T PRK01156 875 VADVAYEVK 883 (895)
T ss_pred hcCeEEEEE
Confidence 444444444
No 167
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=88.14 E-value=40 Score=36.02 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=13.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 006482 428 ERQDFQSTIEALQEEKKMMQSKLR 451 (643)
Q Consensus 428 eR~~l~s~i~aLQEEKklLqskLR 451 (643)
+...++.-+..++.+...++..|.
T Consensus 228 ~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 228 ELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555556666666666666663
No 168
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=88.11 E-value=29 Score=34.33 Aligned_cols=133 Identities=16% Similarity=0.250 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh------------hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 006482 305 ALQRSLEASRALSESLAAENSSLTDSYNQQ------------RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 372 (643)
Q Consensus 305 aLqR~L~~s~~l~esLa~ENsaLt~~yNqQ------------~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle 372 (643)
++..+...-..-++.+|..+..+.+.++.+ ......+..++++++.++......++..+.-|..+-.+
T Consensus 62 s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke 141 (251)
T cd07653 62 SSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKE 141 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555666666666666666533 23344456667777777777777777777777777666
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh-----hhHHHHHHHH
Q 006482 373 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ-----DFQSTIEALQ 440 (643)
Q Consensus 373 ~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~-----~l~s~i~aLQ 440 (643)
...|...-....+.-..=..++.+++...-+...+++.+ ...|...|..+.+... +|-.+++.||
T Consensus 142 ~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a---~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q 211 (251)
T cd07653 142 AEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEA---KNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQ 211 (251)
T ss_pred HHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 666654332222110000011111222222222222222 2456666666655532 6667777777
No 169
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.07 E-value=22 Score=33.01 Aligned_cols=60 Identities=20% Similarity=0.278 Sum_probs=30.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006482 285 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 351 (643)
Q Consensus 285 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 351 (643)
..++...+=..|-+|- ...++-.+.-|+|.+.+-.+....=.+...+..|+.+++.++++
T Consensus 29 ~~~~~~~vin~i~~Ll-------~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere 88 (151)
T PF11559_consen 29 SEDNDVRVINCIYDLL-------QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERE 88 (151)
T ss_pred ccccHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556665543 33444555555555555555444444444455555555444444
No 170
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=88.01 E-value=49 Score=36.89 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 006482 287 EDFAALEQHIEDLTQ-EKFALQRSLEASRA 315 (643)
Q Consensus 287 ~~faaLqqhIeDLT~-EKfaLqR~L~~s~~ 315 (643)
.++..|++-|.+|+. ++-.++++|+.+.+
T Consensus 258 ~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~ 287 (582)
T PF09731_consen 258 ERIDALQKELAELKEEEEEELERALEEQRE 287 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655 45577788877764
No 171
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=87.82 E-value=17 Score=33.95 Aligned_cols=87 Identities=18% Similarity=0.266 Sum_probs=61.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHhhhh
Q 006482 284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-LVELESF 362 (643)
Q Consensus 284 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-~~~le~l 362 (643)
..+...+.|+.+|++.....-.|...=+.=+....+|-++|.+++.+.|.-...|..+...|+--.. +. .+...-.
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~---ak~~l~~r~~ 89 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQ---AKLELESRLL 89 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4566889999999998888777766666677788888889988888888888888888777755221 11 2222334
Q ss_pred HHHHHHHhhhh
Q 006482 363 RNEYANVRLEC 373 (643)
Q Consensus 363 ~aErdaArle~ 373 (643)
++|.|.|.++.
T Consensus 90 k~~~dka~lel 100 (107)
T PF09304_consen 90 KAQKDKAILEL 100 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhhhhHHHH
Confidence 66666665554
No 172
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.73 E-value=38 Score=38.33 Aligned_cols=82 Identities=26% Similarity=0.242 Sum_probs=46.6
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH-
Q 006482 362 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ- 440 (643)
Q Consensus 362 l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ- 440 (643)
.-+|+..-.-+.-.-.||-+.|-.| .|+-|+.+| +.+...++..+-+++.....++-++|.+-..|++|.
T Consensus 276 ~l~Ee~rrhrEil~k~eReasle~E--nlqmr~qql-------eeentelRs~~arlksl~dklaee~qr~sd~LE~lrl 346 (502)
T KOG0982|consen 276 SLSEEERRHREILIKKEREASLEKE--NLQMRDQQL-------EEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRL 346 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3344444444555556666655333 344444433 455556666666667777777777776666666654
Q ss_pred ------HHHHHHHHHHHh
Q 006482 441 ------EEKKMMQSKLRK 452 (643)
Q Consensus 441 ------EEKklLqskLRk 452 (643)
++++..-.+||+
T Consensus 347 ql~~eq~l~~rm~d~Lrr 364 (502)
T KOG0982|consen 347 QLICEQKLRVRMNDILRR 364 (502)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555556666
No 173
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.09 E-value=35 Score=42.60 Aligned_cols=29 Identities=28% Similarity=0.243 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhH
Q 006482 540 ISELALEKEELVQALSSELAQSSKLKDLNN 569 (643)
Q Consensus 540 isEla~Ere~l~~aL~~es~~~s~Lk~lN~ 569 (643)
|.+=|.|+.. +-+|.-+.....++...|.
T Consensus 1013 l~kkE~EkrK-v~~L~qlr~~l~k~~l~~q 1041 (1317)
T KOG0612|consen 1013 LRKKEKEKRK-VMELSQLRTKLNKLRLKNQ 1041 (1317)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhhhhH
Confidence 4455566666 7777777777777776665
No 174
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=86.96 E-value=35 Score=33.99 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHH
Q 006482 288 DFAALEQHIEDLTQE 302 (643)
Q Consensus 288 ~faaLqqhIeDLT~E 302 (643)
-..+|.|.|.||-..
T Consensus 25 P~~~l~q~irem~~~ 39 (219)
T TIGR02977 25 PEKMIRLIIQEMEDT 39 (219)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457899999888763
No 175
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.85 E-value=88 Score=38.77 Aligned_cols=150 Identities=21% Similarity=0.305 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHhhhh----------HHHHHHHhhh
Q 006482 306 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK---VQLVELESF----------RNEYANVRLE 372 (643)
Q Consensus 306 LqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~---aQ~~~le~l----------~aErdaArle 372 (643)
.+-.|+.-..-.+.--.|-+++--+||.+...-+.++..+..|++... +-...-.+| +.|+-..-..
T Consensus 326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~ 405 (1200)
T KOG0964|consen 326 ALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRG 405 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHH
Confidence 334444444555666677788888999999888888888887777322 222222222 3333344445
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhh-------hHHHHHHHHHHhhhHHHhh-------hhhHHHHHH
Q 006482 373 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN-------SQSEISSYKKKISSLEKER-------QDFQSTIEA 438 (643)
Q Consensus 373 ~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~-------l~~E~~s~~~qlsslekeR-------~~l~s~i~a 438 (643)
.+.-.|+-..|..|.-.||...-..=..-=+++..+.. +..+.-..++++..+.-.| ..|++.|++
T Consensus 406 i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~ 485 (1200)
T KOG0964|consen 406 INDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIAN 485 (1200)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666554333221111122222222 2222223333333333333 346788888
Q ss_pred HHHHHHHHHHHHHhhhC
Q 006482 439 LQEEKKMMQSKLRKASG 455 (643)
Q Consensus 439 LQEEKklLqskLRka~~ 455 (643)
+.+.-..-+..||.+..
T Consensus 486 ~~~dl~~~~~~L~~~~~ 502 (1200)
T KOG0964|consen 486 LEEDLSRAEKNLRATMN 502 (1200)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 88888888888888755
No 176
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=86.84 E-value=69 Score=39.66 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=8.1
Q ss_pred HHHHHhhhHHHhhhhhHHHHH
Q 006482 417 SYKKKISSLEKERQDFQSTIE 437 (643)
Q Consensus 417 s~~~qlsslekeR~~l~s~i~ 437 (643)
.+++-+.-+++|+.+|+.-|.
T Consensus 534 eLe~~l~~lE~ENa~LlkqI~ 554 (1195)
T KOG4643|consen 534 ELEELLGNLEEENAHLLKQIQ 554 (1195)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 333333333444444433333
No 177
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.79 E-value=18 Score=42.49 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=28.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 006482 284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 349 (643)
Q Consensus 284 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq 349 (643)
...+-+..|-|.++-|.+|= +.++...-+.+..--..|...+.+|-..+.+++++++.|+
T Consensus 533 ~~~E~l~lL~~a~~vlreeY------i~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~ 592 (717)
T PF10168_consen 533 SPQECLELLSQATKVLREEY------IEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR 592 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666655555431 1122222233333334445555555555555555555544
No 178
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=86.77 E-value=49 Score=35.56 Aligned_cols=94 Identities=20% Similarity=0.349 Sum_probs=73.0
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHH
Q 006482 360 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 439 (643)
Q Consensus 360 e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aL 439 (643)
..+.+|.+.-+-.+.+-.++...||-|.-..=+++.++...-=++++++.+++.++-.+.+++..+..+.-.++.-|.-+
T Consensus 161 ~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~ 240 (294)
T COG1340 161 KELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELREL 240 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34457777888888888888888888888888888888777777788888888888888888888887777777777777
Q ss_pred HHHHHHHHHHHHhh
Q 006482 440 QEEKKMMQSKLRKA 453 (643)
Q Consensus 440 QEEKklLqskLRka 453 (643)
+..-+.|..+.++.
T Consensus 241 ~k~ik~l~~~~~~~ 254 (294)
T COG1340 241 EKKIKALRAKEKAA 254 (294)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655544
No 179
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=86.63 E-value=79 Score=37.77 Aligned_cols=63 Identities=29% Similarity=0.343 Sum_probs=39.9
Q ss_pred hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 006482 389 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 451 (643)
Q Consensus 389 ~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLR 451 (643)
-||.+|-.||.+.=--.+-++++..+-.-+++|+.+-.|-=.-+.--|+.||+|-.-++.+.-
T Consensus 591 ~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~e 653 (786)
T PF05483_consen 591 ILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHE 653 (786)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 455555555554333344455567777777777776666666677778888888766665443
No 180
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.63 E-value=50 Score=39.95 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=15.5
Q ss_pred HhhhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 006482 397 LRSNELKLERQLENSQSEISSYKKKISSL 425 (643)
Q Consensus 397 LRS~eLKlerele~l~~E~~s~~~qlssl 425 (643)
+|-....++||.+.-..+|..++-|++.|
T Consensus 547 ikdqldelskE~esk~~eidi~n~qlkel 575 (1118)
T KOG1029|consen 547 IKDQLDELSKETESKLNEIDIFNNQLKEL 575 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33333444555555555666666666654
No 181
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.60 E-value=29 Score=39.35 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=21.5
Q ss_pred CCCCCcccccCCCcccccCCccccccccCCCCCCCCC---ccccCCccc
Q 006482 158 NSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGT---LFEQTEPER 203 (643)
Q Consensus 158 ~Ssnh~P~~S~~~et~~~rSRpSFLDSlnV~Ra~~~t---~~~~tEp~k 203 (643)
..+|--+|.+.-+++- +-=|.|.+.|++...|+ +.-.+|...
T Consensus 133 ~efNGk~Fn~le~e~C----hll~V~~ve~~~s~d~as~~~~~~tELPT 177 (493)
T KOG0804|consen 133 EEFNGKQFNSLEPEVC----HLLYVDRVEVTESEDGASEPPTGLTELPT 177 (493)
T ss_pred HHcCCCcCCCCCccce----eEEEEEEEEEEecccCCCCCCCCcccCCC
Confidence 3455566666665532 33456666666554433 333445444
No 182
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=86.47 E-value=65 Score=36.63 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=34.7
Q ss_pred hHHHHhhhHHHHHHHH----HHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh-hCCCC
Q 006482 404 LERQLENSQSEISSYK----KKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA-SGSGK 458 (643)
Q Consensus 404 lerele~l~~E~~s~~----~qlsslekeR~~l~s~i~aLQEEKklLqskLRka-~~~gk 458 (643)
++.+|+..+..+.... +.-.+|..+=..|......|..|-.-|...|+.- -..|.
T Consensus 145 l~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~ 204 (475)
T PRK10361 145 LREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGN 204 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcc
Confidence 4666666666666544 3345676676777777777777777777777653 23454
No 183
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=86.44 E-value=41 Score=39.44 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=65.8
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006482 371 LECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 450 (643)
Q Consensus 371 le~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskL 450 (643)
..|....++-+.|-.++..|+.++..++-++.++.++++....++.-. +..|+..+..+.... +-+++.|.|+-.+
T Consensus 234 ~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~L~~~~~~l~~~~-~e~~~r~kL~N~i 309 (670)
T KOG0239|consen 234 GLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL---QSDLESLEENLVEKK-KEKEERRKLHNEI 309 (670)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344555666788888999999999999999999999988887665555 444555566666666 6678889999999
Q ss_pred HhhhCCCCC
Q 006482 451 RKASGSGKS 459 (643)
Q Consensus 451 Rka~~~gk~ 459 (643)
...-++-++
T Consensus 310 ~eLkGnIRV 318 (670)
T KOG0239|consen 310 LELKGNIRV 318 (670)
T ss_pred HHhhcCceE
Confidence 988888886
No 184
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=86.32 E-value=36 Score=33.63 Aligned_cols=127 Identities=16% Similarity=0.229 Sum_probs=64.0
Q ss_pred hhHHHHHHHHH----------HHHHHHHHHHHHHHHH-HHHHHHHHH-------hhhHHHHHHHHhhHHHHHHHHHHHHH
Q 006482 287 EDFAALEQHIE----------DLTQEKFALQRSLEAS-RALSESLAA-------ENSSLTDSYNQQRSVVNQLKSEMEKL 348 (643)
Q Consensus 287 ~~faaLqqhIe----------DLT~EKfaLqR~L~~s-~~l~esLa~-------ENsaLt~~yNqQ~~~v~qLk~~mE~L 348 (643)
|.|..|.+|++ ++=.|+-.+.+.-++. ++|+..... ...++..-|+.--..+..+-..-+++
T Consensus 5 d~~~~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H~~~ 84 (251)
T cd07653 5 DQFDNLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHELI 84 (251)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544 3445565555554443 233433221 12245566666655555555555555
Q ss_pred HHHHHHHH-HHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 006482 349 QEEIKVQL-VELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 416 (643)
Q Consensus 349 q~Ei~aQ~-~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~ 416 (643)
-+.|..+. -.+..+..+....+-.+ .+=...+-.++..+..++.+.|..--++.++++.+.....
T Consensus 85 a~~l~~~v~~~l~~~~~~~~~~rK~~---~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~ 150 (251)
T cd07653 85 AENLNSNVCKELKTLISELRQERKKH---LSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYE 150 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554443 34444554444433333 3333345556666666666666666666666665554433
No 185
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=86.21 E-value=91 Score=38.12 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=15.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Q 006482 533 IHNINALISELALEKEELVQALSSE 557 (643)
Q Consensus 533 I~nInaLisEla~Ere~l~~aL~~e 557 (643)
-|+|++|.-.+..+--..+-.|.++
T Consensus 684 ~d~v~~l~k~~~~~a~~~~~~l~~~ 708 (980)
T KOG0980|consen 684 SDRVNDLCKKCGREALAFLVSLSSE 708 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566777766666655555555544
No 186
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=86.14 E-value=23 Score=35.07 Aligned_cols=55 Identities=25% Similarity=0.329 Sum_probs=37.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHH
Q 006482 363 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK 420 (643)
Q Consensus 363 ~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~ 420 (643)
+.|..+...-+..--.|-..|=.|||.|=-.+..+|+.. ++.|..++.|+-+|-+
T Consensus 126 ~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~T---erdL~~~r~e~~r~~r 180 (182)
T PF15035_consen 126 REEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTAT---ERDLSDMRAEFARTSR 180 (182)
T ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHc
Confidence 334444333334444455555699999999999888876 5788888888777654
No 187
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.10 E-value=7.9 Score=38.93 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=50.0
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006482 282 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 361 (643)
Q Consensus 282 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~ 361 (643)
.+.-.+.+.+||+-|++|+.+--.+ -+++..+...+.+++++....+++|+.+-.+|+++++....+++.
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~----------~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNI----------DNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888887443322 233445555566666666777777888888887777666666666
Q ss_pred hHHHHHH
Q 006482 362 FRNEYAN 368 (643)
Q Consensus 362 l~aErda 368 (643)
+.+|.+.
T Consensus 158 l~~~~~~ 164 (206)
T PRK10884 158 ANLQLDD 164 (206)
T ss_pred HHHHHHH
Confidence 6555554
No 188
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=86.00 E-value=23 Score=40.48 Aligned_cols=54 Identities=31% Similarity=0.260 Sum_probs=42.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHH-------HHHHhhhHHHHH
Q 006482 532 MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSR-------KLEHQTQRLELL 585 (643)
Q Consensus 532 mI~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsr-------KLE~qTQRLELl 585 (643)
-|++.+++|+||-.+-+-+-..|...-+.|-.+|+.|-++-+ |||-.-+.|-|+
T Consensus 488 ~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~ 548 (622)
T COG5185 488 DIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLL 548 (622)
T ss_pred HhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 368889999999999999989999999999999999887654 445444444443
No 189
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=85.78 E-value=34 Score=35.67 Aligned_cols=137 Identities=12% Similarity=0.166 Sum_probs=76.2
Q ss_pred HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 006482 316 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 395 (643)
Q Consensus 316 l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l 395 (643)
|+-+++.+-..+...|..++ ...-.+-..++.++..+...|+..+..|+.|-.+...|..+-...-++.-.=...+.
T Consensus 89 l~~~v~~~l~~~~~~l~~~r---k~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~e 165 (252)
T cd07675 89 MGHRVYGELMRYSHDLKGER---KMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVE 165 (252)
T ss_pred HHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHH
Confidence 33334444444454444432 222255678888999999999999999999988888887774432222111111112
Q ss_pred HHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhh-----hhhHHHHHHHH--HHHHH--HHHHHHhhhCCCC
Q 006482 396 RLRSNELKLERQLENSQSEISSYKKKISSLEKER-----QDFQSTIEALQ--EEKKM--MQSKLRKASGSGK 458 (643)
Q Consensus 396 ~LRS~eLKlerele~l~~E~~s~~~qlsslekeR-----~~l~s~i~aLQ--EEKkl--LqskLRka~~~gk 458 (643)
++|..-=+-...++.. ...|..+|..+-+.- .+|-.+++.|| ||+|. |..-+..++.-|+
T Consensus 166 K~k~~~~~~~q~~e~a---Kn~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~~l~e~~~~~~~~E~ 234 (252)
T cd07675 166 KAKQQLNLRTHMADES---KNEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERRTVKLSECYRGFADSER 234 (252)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222212223322 246777777765543 34888999999 56643 3444444444333
No 190
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=85.57 E-value=4.9 Score=46.12 Aligned_cols=29 Identities=34% Similarity=0.377 Sum_probs=23.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhCC
Q 006482 428 ERQDFQSTIEALQEEKKMMQSKLRKASGS 456 (643)
Q Consensus 428 eR~~l~s~i~aLQEEKklLqskLRka~~~ 456 (643)
...--+.++++||.|-..|..+|+..-.+
T Consensus 560 ~~~~k~~~l~~L~~En~~L~~~l~~le~~ 588 (722)
T PF05557_consen 560 AEQIKKSTLEALQAENEDLLARLRSLEEG 588 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 33445689999999999999999887554
No 191
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=85.48 E-value=24 Score=39.92 Aligned_cols=109 Identities=24% Similarity=0.315 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHH-HHHHH
Q 006482 304 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD-ERAKI 382 (643)
Q Consensus 304 faLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~-ERak~ 382 (643)
.+|+|++..--++.|+-|+ |-++||+....-....+-++.... +||+....-|. -=++.
T Consensus 330 ~al~~A~~GhaR~lEqYad----LqEk~~~Ll~~Hr~i~egI~dVKk----------------aAakAg~kG~~~rF~~s 389 (488)
T PF06548_consen 330 DALQRAMEGHARMLEQYAD----LQEKHNDLLARHRRIMEGIEDVKK----------------AAAKAGVKGAESRFINS 389 (488)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHhccccchHHHHHH
Confidence 6899999999999999885 788999887766666655543333 34444433343 33789
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482 383 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 383 LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
||+|+-.|-.. + |||.+-++.|-+.++.|+. +|.+|.|-=-. |..|||.|
T Consensus 390 laaEiSalr~e--r--------EkEr~~l~~eNk~L~~QLr----------DTAEAVqAagE-llvrl~ea 439 (488)
T PF06548_consen 390 LAAEISALRAE--R--------EKERRFLKDENKGLQIQLR----------DTAEAVQAAGE-LLVRLREA 439 (488)
T ss_pred HHHHHHHHHHH--H--------HHHHHHHHHHhHHHHHHHH----------hHHHHHHHHHH-HHHHHHhH
Confidence 99998655221 1 3333345666666655554 56666653322 34556554
No 192
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.32 E-value=10 Score=44.11 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHH
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER 379 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ER 379 (643)
.+..+...+|+|+.|+..-...++.++.|.-..+.+|..+..+
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554445555544444444444444433
No 193
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=85.11 E-value=12 Score=33.31 Aligned_cols=72 Identities=24% Similarity=0.282 Sum_probs=60.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006482 284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 359 (643)
Q Consensus 284 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l 359 (643)
.+-.++..||+-|--|+.||-.--.-.-.+++-.+.|-.||-.|....+.+...+.+|++ ++.++..++..+
T Consensus 21 ~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~----~E~~~~~~l~~~ 92 (96)
T PF08647_consen 21 KKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE----TEKEFVRKLKNL 92 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHh
Confidence 455789999999999999998887777888888999999999999999999999999988 555555554443
No 194
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.93 E-value=39 Score=32.66 Aligned_cols=52 Identities=27% Similarity=0.380 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006482 336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV 387 (643)
Q Consensus 336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEV 387 (643)
.++.-|+.+++.+-.++..=...|.+++.|+++.-..|..=.+|...|.+=+
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555555555555555444444443333
No 195
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=84.88 E-value=48 Score=33.75 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHh
Q 006482 348 LQEEIKVQLVELESFRNEYANVR 370 (643)
Q Consensus 348 Lq~Ei~aQ~~~le~l~aErdaAr 370 (643)
++.++......++..+++++.|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~a~ 117 (327)
T TIGR02971 95 LFKDVAAQQATLNRLEAELETAQ 117 (327)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444333
No 196
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=84.87 E-value=28 Score=31.07 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=14.4
Q ss_pred HHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHH
Q 006482 406 RQLENSQSEISSYKKKISSLEKERQDFQSTIE 437 (643)
Q Consensus 406 rele~l~~E~~s~~~qlsslekeR~~l~s~i~ 437 (643)
..+..+..++..++..+..+.+++..|..+.+
T Consensus 82 ~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~e 113 (141)
T TIGR02473 82 QELALLQQEVEAKRERLLEARRELKALEKLKE 113 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444433
No 197
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=84.83 E-value=63 Score=39.90 Aligned_cols=88 Identities=23% Similarity=0.295 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 006482 294 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 373 (643)
Q Consensus 294 qhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~ 373 (643)
-.|.|++.|=--|-|.|.++|+=.==.-. -++|=+.-...++...++++|+++|++-...+..+.+=|..-...+
T Consensus 404 ~llKd~~~EIerLK~dl~AaReKnGvyis-----ee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~ 478 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAAREKNGVYIS-----EERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIK 478 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCceEec-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 56889999998999999988873221111 1344444444555555555555555555555566655555444444
Q ss_pred hhHHHHHHHHHHH
Q 006482 374 NAADERAKILASE 386 (643)
Q Consensus 374 ~aA~ERak~LAaE 386 (643)
..-.++-..|-..
T Consensus 479 ~~l~~~~~~~k~~ 491 (1041)
T KOG0243|consen 479 ELLKEEKEKLKSK 491 (1041)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 198
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.67 E-value=13 Score=38.25 Aligned_cols=61 Identities=31% Similarity=0.481 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006482 390 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 450 (643)
Q Consensus 390 LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskL 450 (643)
|||+...+.-+--|++.+++....+.+..++++.++.|.=.+++...|.|-||--.||.++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 6666666666666777777777777888888888888888888888888888877777654
No 199
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.64 E-value=80 Score=36.08 Aligned_cols=37 Identities=30% Similarity=0.304 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006482 413 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 450 (643)
Q Consensus 413 ~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskL 450 (643)
.-+.++.+++.... ..+.-+.+.+.|.+-.+.|...+
T Consensus 300 ~ll~~~~~q~~~e~-~~~~~~~~~~~l~~~~~~i~~~~ 336 (650)
T TIGR03185 300 NLLDSTKAQLQKEE-QSQQNQLTQEELEERDKELLESL 336 (650)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555432 23344444455544444444433
No 200
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=84.60 E-value=50 Score=33.73 Aligned_cols=106 Identities=13% Similarity=0.179 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH-----HHHHHHH
Q 006482 314 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-----ILASEVI 388 (643)
Q Consensus 314 ~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak-----~LAaEVV 388 (643)
..++++|..+-..+..=.+.|......++..++.++.....|.-.++.-+..|..+-.+...|..+.. ....|+=
T Consensus 78 ~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~ 157 (240)
T cd07672 78 IQLAQTLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQE 157 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHH
Confidence 34666666665545555577777888889999999998888888888888777765555444443321 1123454
Q ss_pred hHHHHHHHHhhhhhhhHHHHhhhHHHHHHHH
Q 006482 389 GLEEKALRLRSNELKLERQLENSQSEISSYK 419 (643)
Q Consensus 389 ~LEEk~l~LRS~eLKlerele~l~~E~~s~~ 419 (643)
-|++|+.+.+.+.-|.+++.+....++..++
T Consensus 158 K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~ 188 (240)
T cd07672 158 KLFAKLAQSKQNAEDADRLYMQNISVLDKIR 188 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556665555555555554444444444333
No 201
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=84.27 E-value=14 Score=31.56 Aligned_cols=52 Identities=23% Similarity=0.226 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006482 305 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 356 (643)
Q Consensus 305 aLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~ 356 (643)
.+.|-++........|..|++....+-=.-......|+.+++.|+.|++.++
T Consensus 16 ~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 16 SLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455677777788888888888887777777788888888888888865543
No 202
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=84.25 E-value=81 Score=35.80 Aligned_cols=169 Identities=17% Similarity=0.247 Sum_probs=114.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006482 285 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 364 (643)
Q Consensus 285 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a 364 (643)
=..++..+++.|+++..-=-.| .|..+.+..+.+.++-+.|-+.+=.....-..++..+..+..-|....-....+..
T Consensus 250 i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~ 327 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE 327 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665555543321111 45667777777777777777777666666667777777777777777778888899
Q ss_pred HHHHHhhhhhhH---HHHHHHHHHHHHhHHHHHHHHhh--------------hhhhhHHHHhhhHHHHHHHHHHhhhHHH
Q 006482 365 EYANVRLECNAA---DERAKILASEVIGLEEKALRLRS--------------NELKLERQLENSQSEISSYKKKISSLEK 427 (643)
Q Consensus 365 ErdaArle~~aA---~ERak~LAaEVV~LEEk~l~LRS--------------~eLKlerele~l~~E~~s~~~qlsslek 427 (643)
|.++.++.+.=. .++.+.+..++-.|+.+...+.- .--++.++|+.+..+...+...+..|.+
T Consensus 328 e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 328 ELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887533 46788888888888887765532 2233455666666666666667777777
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482 428 ERQDFQSTIEALQEEKKMMQSKLRKASG 455 (643)
Q Consensus 428 eR~~l~s~i~aLQEEKklLqskLRka~~ 455 (643)
+=...+..+..++.+-...+.+|.+...
T Consensus 408 dE~~Ar~~l~~~~~~l~~ikR~lek~nL 435 (560)
T PF06160_consen 408 DEKEAREKLQKLKQKLREIKRRLEKSNL 435 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6666666777776666666666666655
No 203
>PF13166 AAA_13: AAA domain
Probab=84.01 E-value=81 Score=35.65 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=10.1
Q ss_pred CcccchHHHHHHHHHHHhc
Q 006482 612 ADEGDEVVERVLGWIMKLF 630 (643)
Q Consensus 612 ~degdevvervlgwimklf 630 (643)
.|-++..++.++.-+-++|
T Consensus 693 ~~~~~~~~~e~~~~~~~if 711 (712)
T PF13166_consen 693 IDMNPIDIEEYKKVFRKIF 711 (712)
T ss_pred cCCChhhHHHHHHHHHHHh
Confidence 3444555556555555544
No 204
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=83.73 E-value=8.2 Score=42.50 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482 411 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 455 (643)
Q Consensus 411 l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~ 455 (643)
+..-...|..++..+..++.++...+..++++...|+.+|.++..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333344445555555555555666666667777777777766654
No 205
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=83.38 E-value=83 Score=35.26 Aligned_cols=99 Identities=21% Similarity=0.238 Sum_probs=56.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHhhHHHHHHHHHhhhHHHHHHHHHHhh----hccc-------c
Q 006482 531 RMIHNINALISELALEKEELVQALSSEL--AQSSKLKDLNNELSRKLEHQTQRLELLTAQNMAN----ENIS-------F 597 (643)
Q Consensus 531 RmI~nInaLisEla~Ere~l~~aL~~es--~~~s~Lk~lN~ELsrKLE~qTQRLELltsq~m~~----e~~~-------a 597 (643)
+....++.=+.+-+.|+..++.+|+... +.-.++..+-..|+..|=.-+..||.+++.+-+- |.+. +
T Consensus 355 ~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~~~~ 434 (511)
T PF09787_consen 355 RQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKEEAS 434 (511)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHhhcc
Confidence 3444455556667788888888888765 2234455555555544444456677777655442 1111 1
Q ss_pred CCCCccccccccccCcccchHHHHHHHHHHHhcCCC
Q 006482 598 RQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGG 633 (643)
Q Consensus 598 ~~~d~~~~~~~~~~~degdevvervlgwimklfpgg 633 (643)
....++ -...|.+.+|.+-.| +-+.|+..|+.
T Consensus 435 ~~~~~~---~~~~~~~~~~d~~~r-~~~~~~~~~~d 466 (511)
T PF09787_consen 435 NNRPSS---ILMKYSNSEDDAESR-VPLLMKDSPHD 466 (511)
T ss_pred CCCCch---hhHhhccCCCchhhh-hhhhccCCCcc
Confidence 122222 234566667777777 67777777665
No 206
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=83.24 E-value=9.1 Score=34.85 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=52.3
Q ss_pred chhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006482 285 HNEDFAALEQHIEDLTQEKFA-----------LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 353 (643)
Q Consensus 285 ~~~~faaLqqhIeDLT~EKfa-----------LqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 353 (643)
..-||++||.||..+|-=++. +.+-+.=+|=..|-|-.-.+.|.+........+.++..+.++|+..++
T Consensus 25 ~~~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~ 104 (118)
T PF13815_consen 25 RELDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLK 104 (118)
T ss_pred hccCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999977643321 233444455556666666666666666666666667777777777766
Q ss_pred HHHHHhhhhHHH
Q 006482 354 VQLVELESFRNE 365 (643)
Q Consensus 354 aQ~~~le~l~aE 365 (643)
.+..++..++.|
T Consensus 105 ~~~~~~k~lk~E 116 (118)
T PF13815_consen 105 KQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHh
Confidence 666666666655
No 207
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=82.95 E-value=87 Score=35.22 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006482 289 FAALEQHIEDLTQEKFALQRSLEAS 313 (643)
Q Consensus 289 faaLqqhIeDLT~EKfaLqR~L~~s 313 (643)
++.+++-|.+--++.-.|+..|...
T Consensus 47 i~~~~~~i~~~~~~~~kL~~~lk~~ 71 (420)
T COG4942 47 IAALEKKIREQQDQRAKLEKQLKSL 71 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333343333333
No 208
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=82.90 E-value=47 Score=32.10 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=14.8
Q ss_pred HHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHH
Q 006482 386 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK 421 (643)
Q Consensus 386 EVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~q 421 (643)
|...+|.|+..+ .-|+..++.+++.+|++.+-.
T Consensus 121 e~~~~~~ki~e~---~~ki~~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 121 EQAKQELKIQEL---NNKIDTEIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444333 234445555555555544433
No 209
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.88 E-value=1.1e+02 Score=36.43 Aligned_cols=99 Identities=19% Similarity=0.286 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHH-------HHHHHHhhhhhhhHHHHhhhHH
Q 006482 341 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLE-------EKALRLRSNELKLERQLENSQS 413 (643)
Q Consensus 341 Lk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LE-------Ek~l~LRS~eLKlerele~l~~ 413 (643)
.+.+.+||...........+.+..||...|-+.-++-.|=..|-.+--.|| .+|--||++-+ |.|+++.
T Consensus 53 ~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQv----efE~~Kh 128 (717)
T PF09730_consen 53 VQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQV----EFEGLKH 128 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH----HHHHHHH
Confidence 333344444444444444444445555555555555555555555555554 45566666655 3445555
Q ss_pred HHHHH-------HHHhhhHHHhh----hhhHHHHHHHHHHH
Q 006482 414 EISSY-------KKKISSLEKER----QDFQSTIEALQEEK 443 (643)
Q Consensus 414 E~~s~-------~~qlsslekeR----~~l~s~i~aLQEEK 443 (643)
||+++ +.|++.+.+=| ..|...+++||.|+
T Consensus 129 ei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~ER 169 (717)
T PF09730_consen 129 EIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSER 169 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 55666554433 24777888999776
No 210
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=82.85 E-value=1.2e+02 Score=36.55 Aligned_cols=167 Identities=19% Similarity=0.268 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---Hhh-----hHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006482 286 NEDFAALEQHIEDLTQEKFALQRSLEA----SRALSESLA---AEN-----SSLTDSYNQQRSVVNQLKSEMEKLQEEIK 353 (643)
Q Consensus 286 ~~~faaLqqhIeDLT~EKfaLqR~L~~----s~~l~esLa---~EN-----saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 353 (643)
..+.++|.+++|+.|+.|.++..-+.. -++-+++|- .|. ++++..-.+.-..-.+|..++..+..+++
T Consensus 23 e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~ 102 (769)
T PF05911_consen 23 EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLA 102 (769)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999988764321 233344332 222 23333333333333355555555555444
Q ss_pred HHHHHhhhhH---HHHHHHhhhhhhHHHHH----HHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHH
Q 006482 354 VQLVELESFR---NEYANVRLECNAADERA----KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 426 (643)
Q Consensus 354 aQ~~~le~l~---aErdaArle~~aA~ERa----k~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssle 426 (643)
.-.++..++. .|+++...+......+| ..|-.-+-.+|-.+.-||-+-+-+.+||+=-..|+.=.++.+.++.
T Consensus 103 ~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~ 182 (769)
T PF05911_consen 103 ESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAAS 182 (769)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4333333332 13333322222222221 1222223334444455555666666776665556555566666554
Q ss_pred HhhhhhHH--HHHHHHHHHHHHHHHHHhhh
Q 006482 427 KERQDFQS--TIEALQEEKKMMQSKLRKAS 454 (643)
Q Consensus 427 keR~~l~s--~i~aLQEEKklLqskLRka~ 454 (643)
+|||.+ -|-.|..|=..|..-+||..
T Consensus 183 --kqhle~vkkiakLEaEC~rLr~l~rk~l 210 (769)
T PF05911_consen 183 --KQHLESVKKIAKLEAECQRLRALVRKKL 210 (769)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 455555 47788899999999999864
No 211
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=82.82 E-value=95 Score=35.53 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=30.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHH
Q 006482 285 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVN 339 (643)
Q Consensus 285 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~ 339 (643)
...++..|++-|+++..+.-.+...++..+.-.+.+..+-..+.+.|...|+..-
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~ 261 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLF 261 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3345555555555555555555555555555555555555566666665555433
No 212
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=82.58 E-value=75 Score=37.73 Aligned_cols=48 Identities=23% Similarity=0.307 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006482 304 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 351 (643)
Q Consensus 304 faLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 351 (643)
|.|++...++....-.|-.|-+.|.+.-=+-+..+..+.-.+-+|+.+
T Consensus 485 fklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq 532 (698)
T KOG0978|consen 485 FKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQ 532 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665555555555444444444444444444443
No 213
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.55 E-value=94 Score=36.50 Aligned_cols=132 Identities=20% Similarity=0.311 Sum_probs=81.3
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH-------
Q 006482 315 ALSESLAAENSSLTDSYNQQRSVV-NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE------- 386 (643)
Q Consensus 315 ~l~esLa~ENsaLt~~yNqQ~~~v-~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE------- 386 (643)
+--+-|-+--+-+-++|=...+.| .++++-+.+|+..++.|+-.+.-...||.- ..|||-.||.-
T Consensus 559 E~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~-------i~e~a~~La~R~eea~e~ 631 (741)
T KOG4460|consen 559 ECLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKS-------LREMAERLADRYEEAKEK 631 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 333444555555666776666555 578889999999999999988888888765 34444444432
Q ss_pred HHhHHHHHHHHhhh-----------hhhhHHHHhhhHHHHHHHHHHhhhH----HHhhhhhHHHHHHHH--------HHH
Q 006482 387 VIGLEEKALRLRSN-----------ELKLERQLENSQSEISSYKKKISSL----EKERQDFQSTIEALQ--------EEK 443 (643)
Q Consensus 387 VV~LEEk~l~LRS~-----------eLKlerele~l~~E~~s~~~qlssl----ekeR~~l~s~i~aLQ--------EEK 443 (643)
--.|+.+|.+||+. |+.-.+|++-+..+.+.+...++-+ .|.|+|+...+.|+| .+.
T Consensus 632 qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~ 711 (741)
T KOG4460|consen 632 QEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQR 711 (741)
T ss_pred HHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHH
Confidence 23578888888763 3333444444444444444333332 357778888877777 233
Q ss_pred HHHHHHHHhh
Q 006482 444 KMMQSKLRKA 453 (643)
Q Consensus 444 klLqskLRka 453 (643)
+-+|+-|-+.
T Consensus 712 ~~iqsiL~~L 721 (741)
T KOG4460|consen 712 KCIQSILKEL 721 (741)
T ss_pred HHHHHHHHHH
Confidence 5566655554
No 214
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=82.51 E-value=1e+02 Score=35.61 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=8.4
Q ss_pred hhhHHHhhhhhHHHHHHHH
Q 006482 422 ISSLEKERQDFQSTIEALQ 440 (643)
Q Consensus 422 lsslekeR~~l~s~i~aLQ 440 (643)
+..|+.|..-.+...+.|.
T Consensus 378 ~~~L~Re~~~~~~~Y~~ll 396 (754)
T TIGR01005 378 LDALQRDAAAKRQLYESYL 396 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 215
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=82.48 E-value=7.4 Score=32.87 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHH---hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh
Q 006482 347 KLQEEIKVQLVE---LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 399 (643)
Q Consensus 347 ~Lq~Ei~aQ~~~---le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS 399 (643)
-|+.||+|.... |..+++.+-++.....+|..|-+.|-.||-.|++++-.+|+
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356666666554 34457777788888889999999999999999988887775
No 216
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=82.30 E-value=43 Score=31.18 Aligned_cols=75 Identities=20% Similarity=0.342 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhh
Q 006482 336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 410 (643)
Q Consensus 336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~ 410 (643)
..-..|...+.+++.++......++.++...+.+..++..+.++-+.|-.++-.++.....++-+.-|+...+..
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~ 126 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ 126 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555555555555556666666666666666666555555544444444433
No 217
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=82.03 E-value=59 Score=34.41 Aligned_cols=69 Identities=25% Similarity=0.383 Sum_probs=58.4
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHH
Q 006482 380 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 448 (643)
Q Consensus 380 ak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqs 448 (643)
.+.+..+|-.++..|-.+.++|-.|+..++.-+.|+++.+|++.+|.+=|=-.....+.|.+|-+.|..
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~ 239 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYE 239 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888888888888888889999999999999999999999999999998876654
No 218
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=81.96 E-value=4.2 Score=36.49 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA 380 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa 380 (643)
.|++|..++..|...+..-..+...+++.-++|+.|+..|.+|-
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444455555544444444455667777788888888888874
No 219
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=81.80 E-value=77 Score=33.76 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=12.9
Q ss_pred cccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 006482 276 NQHGFYSTKHNEDFAALEQHIEDLTQEKFALQ 307 (643)
Q Consensus 276 ~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLq 307 (643)
..++.++.....++. .+-+.+|..+....+
T Consensus 199 ~~~~i~~~~~~~~~~--~~~l~~l~~~l~~~~ 228 (444)
T TIGR03017 199 QEKGIVSSDERLDVE--RARLNELSAQLVAAQ 228 (444)
T ss_pred HHcCCcccCcccchH--HHHHHHHHHHHHHHH
Confidence 345555554433332 233445544444433
No 220
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=81.56 E-value=8.2 Score=33.39 Aligned_cols=66 Identities=17% Similarity=0.318 Sum_probs=45.6
Q ss_pred HHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHhhhh-HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHH
Q 006482 328 TDSYNQQRSVVNQLKSEMEK-LQEEIKVQLVELESF-RNEYANVRLECNAADERAKILASEVIGLEEK 393 (643)
Q Consensus 328 t~~yNqQ~~~v~qLk~~mE~-Lq~Ei~aQ~~~le~l-~aErdaArle~~aA~ERak~LAaEVV~LEEk 393 (643)
.+..++--...+.+++++++ ++..++..+..+.-+ +.|.|+.+.-...+.+|-..|.+.|..||+|
T Consensus 12 ~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 12 AKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444444556666654 344555555555555 8999999999999999999999999888864
No 221
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=81.34 E-value=15 Score=31.71 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006482 311 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 356 (643)
Q Consensus 311 ~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~ 356 (643)
+++-+....|-.||+.|-...++....-.+|+.+.++|+++..+..
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~ 59 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555555554444433
No 222
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=80.87 E-value=5.2 Score=40.05 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHHH
Q 006482 538 ALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 587 (643)
Q Consensus 538 aLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELlts 587 (643)
.|...|++||.+-.+.-.+.-.++..|+.-+..|...|+.++..||-+|-
T Consensus 109 ~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTD 158 (179)
T PF13942_consen 109 VLQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTD 158 (179)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 46778999999998888888999999999999999999999999999985
No 223
>PRK10722 hypothetical protein; Provisional
Probab=80.57 E-value=5.8 Score=41.42 Aligned_cols=51 Identities=29% Similarity=0.289 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHHHH
Q 006482 538 ALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ 588 (643)
Q Consensus 538 aLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELltsq 588 (643)
.|+..|++||.+--+..-+..++...|+.-+++|.++|+.++.+||-+|.=
T Consensus 155 ~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdI 205 (247)
T PRK10722 155 ALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDI 205 (247)
T ss_pred HHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888887666666777899999999999999999999999999863
No 224
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=80.56 E-value=1.1e+02 Score=34.58 Aligned_cols=58 Identities=9% Similarity=0.173 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006482 311 EASRALSESLAAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 368 (643)
Q Consensus 311 ~~s~~l~esLa~ENsaLt~~yNqQ--~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErda 368 (643)
+-++++++.|-.+=+.+...-|++ ...|.-.+.++++-++.+..-+.+|..|+....-
T Consensus 215 edA~~ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gv 274 (434)
T PRK15178 215 KQAEFFAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKD 274 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 568899999999999999988875 5678888889988888888888888888766543
No 225
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=80.38 E-value=72 Score=32.55 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=39.4
Q ss_pred HHHHHHHHhhhH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 006482 315 ALSESLAAENSS-LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 372 (643)
Q Consensus 315 ~l~esLa~ENsa-Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle 372 (643)
.+++.|.+++.. |..=...+...+..++..|+.++..++....++...+..|..+-.+
T Consensus 78 ~la~~L~~ev~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke 136 (233)
T cd07649 78 KFSSKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKD 136 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666633 3333344566778888889999998888888888887777654433
No 226
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=80.03 E-value=11 Score=43.79 Aligned_cols=79 Identities=16% Similarity=0.297 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH
Q 006482 302 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA 380 (643)
Q Consensus 302 EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa 380 (643)
+-|+..|.+..+.++-+++.-|--.|--+--+..+.++++.-++|.|+++|-....+|++++.|..+||-...++.++-
T Consensus 73 ~~~s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 73 SGYSIGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 4455666666666666666666666666666666778888888888888888888899999999999888877777764
No 227
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=79.84 E-value=70 Score=32.06 Aligned_cols=169 Identities=18% Similarity=0.254 Sum_probs=99.4
Q ss_pred cCCchhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhHHHHH------------HHHhhHHHHHHHH
Q 006482 282 STKHNEDFAALEQHIEDLTQEKF------ALQRSLEASRALSESLAAENSSLTDS------------YNQQRSVVNQLKS 343 (643)
Q Consensus 282 s~~~~~~faaLqqhIeDLT~EKf------aLqR~L~~s~~l~esLa~ENsaLt~~------------yNqQ~~~v~qLk~ 343 (643)
++.+..-...|++.++-|.+-|- .|+..++.+=.....|-.+=..+... ..+.-..+.+...
T Consensus 13 ~~~~~~~i~~l~~al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~ 92 (240)
T PF12795_consen 13 EPEQKALIQDLQQALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQA 92 (240)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHH
Confidence 44555667777777666655443 45555555555555555444444332 2344445555555
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhH---------HHHHHHHhhhhhhhHHHHhhhHHH
Q 006482 344 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL---------EEKALRLRSNELKLERQLENSQSE 414 (643)
Q Consensus 344 ~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~L---------EEk~l~LRS~eLKlerele~l~~E 414 (643)
++..++..+...-..+..+..=-.+|+....++..|-..+....-.+ +.+...|....--++.++.-+..+
T Consensus 93 ~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~e 172 (240)
T PF12795_consen 93 QLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQE 172 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555555555555556677788888888888888887665 555555555544445555555555
Q ss_pred HHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006482 415 ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 450 (643)
Q Consensus 415 ~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskL 450 (643)
..+......=+.+.|.-+..-++.++.+-..||..|
T Consensus 173 l~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~l 208 (240)
T PF12795_consen 173 LLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLL 208 (240)
T ss_pred HHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555445455555555566666666666666544
No 228
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.82 E-value=10 Score=35.86 Aligned_cols=67 Identities=24% Similarity=0.393 Sum_probs=37.6
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 006482 380 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGK 458 (643)
Q Consensus 380 ak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~~gk 458 (643)
-..|-.|+..|.+++..++.. +..+..|+..+.+.+.. .+|+..|+.|++|.+.|..||...-.+..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~-------~k~l~~eL~~L~~~~t~-----~el~~~i~~l~~e~~~l~~kL~~l~~~~~ 140 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKE-------VKSLEAELASLSSEPTN-----EELREEIEELEEEIEELEEKLEKLRSGSK 140 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344444555555555544333 33344444444444442 24667788888888888888877655333
No 229
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=79.66 E-value=8.2 Score=32.42 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=27.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH
Q 006482 330 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 381 (643)
Q Consensus 330 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak 381 (643)
+.++....|.+|..++.+|.++|.+ ++.|..+|+.|+..|.+|--
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~-------lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNA-------LRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 4455556666777777777766544 44555566666666666643
No 230
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=79.58 E-value=93 Score=33.36 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 368 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErda 368 (643)
-+..|+..|..+++-++.-++.+++|-.|+.+
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~ 109 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSA 109 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Confidence 34677889999999888889999999888876
No 231
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=79.48 E-value=75 Score=32.21 Aligned_cols=131 Identities=13% Similarity=0.123 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 006482 304 FALQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 371 (643)
Q Consensus 304 faLqR~L~~s~~l~esLa~ENsaLt~~yNq------------Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArl 371 (643)
..|..++..-..-++.+|.-+..|...-.. |...-..++..+++++.-+......+...+..|..+--
T Consensus 58 Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~k 137 (239)
T cd07658 58 GTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDEQHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLAR 137 (239)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666666555554432 22233445555556666555656666666666666555
Q ss_pred hhhhHHHHHH--------------------HHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhh
Q 006482 372 ECNAADERAK--------------------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD 431 (643)
Q Consensus 372 e~~aA~ERak--------------------~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~ 431 (643)
+...|..+.. .-..++--|+.|+.+.+....|.+.+.......+..++..-. .+
T Consensus 138 E~e~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~------~~ 211 (239)
T cd07658 138 ENEKLQDQVEDNKQSCTKQKMLNKLKKSAEVQDKEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWE------SA 211 (239)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 5555554331 122455566666666666666666555555544444444333 24
Q ss_pred hHHHHHHHH
Q 006482 432 FQSTIEALQ 440 (643)
Q Consensus 432 l~s~i~aLQ 440 (643)
|..+++.+|
T Consensus 212 ~~~~~~~~Q 220 (239)
T cd07658 212 LRKGLNQYE 220 (239)
T ss_pred HHHHHHHHH
Confidence 667777777
No 232
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=79.44 E-value=40 Score=29.97 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=52.3
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 006482 322 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 401 (643)
Q Consensus 322 ~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~e 401 (643)
.|-..++..|+++...+..+..++--+++. +.-+..|...|.+.|-+|+--...|-.|+..|--.+- |+.+
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k-------~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~--Ks~~ 73 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQK-------KLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS--KSSE 73 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HhHH
Confidence 455677788888888888877777666664 3556778888888888888888888888887755443 3444
Q ss_pred h
Q 006482 402 L 402 (643)
Q Consensus 402 L 402 (643)
+
T Consensus 74 ~ 74 (96)
T PF08647_consen 74 L 74 (96)
T ss_pred H
Confidence 4
No 233
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=79.41 E-value=94 Score=33.30 Aligned_cols=7 Identities=29% Similarity=0.496 Sum_probs=2.9
Q ss_pred hhCCCCC
Q 006482 453 ASGSGKS 459 (643)
Q Consensus 453 a~~~gk~ 459 (643)
++-.|.+
T Consensus 258 AP~dG~V 264 (421)
T TIGR03794 258 SQHSGRV 264 (421)
T ss_pred cCCCeEE
Confidence 3444443
No 234
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=79.39 E-value=98 Score=33.50 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 006482 288 DFAALEQHIEDLTQEKF 304 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKf 304 (643)
.+.-||+.+|-|..||-
T Consensus 19 KIqelE~QldkLkKE~q 35 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQ 35 (307)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667777777777763
No 235
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=79.30 E-value=81 Score=32.47 Aligned_cols=10 Identities=20% Similarity=0.312 Sum_probs=5.3
Q ss_pred hhhCCCCCcC
Q 006482 452 KASGSGKSID 461 (643)
Q Consensus 452 ka~~~gk~~~ 461 (643)
+++-.|....
T Consensus 207 ~AP~dG~V~~ 216 (331)
T PRK03598 207 IAPSDGTILT 216 (331)
T ss_pred ECCCCeEEEe
Confidence 3466666543
No 236
>PRK10698 phage shock protein PspA; Provisional
Probab=79.22 E-value=76 Score=32.12 Aligned_cols=31 Identities=6% Similarity=0.067 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006482 288 DFAALEQHIEDLTQEKFALQRSLEASRALSE 318 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~e 318 (643)
-..+|.|.|.||-..--.+.+++++..+.-.
T Consensus 25 P~k~l~q~i~em~~~l~~~r~alA~~~A~~k 55 (222)
T PRK10698 25 PQKLVRLMIQEMEDTLVEVRSTSARALAEKK 55 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999988888777766554433
No 237
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.07 E-value=25 Score=33.34 Aligned_cols=63 Identities=32% Similarity=0.390 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh--hhHHHHHHHHHHHHHhHHHHHHHHhh
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC--NAADERAKILASEVIGLEEKALRLRS 399 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~--~aA~ERak~LAaEVV~LEEk~l~LRS 399 (643)
.+.++..++.+|++++......+..+.+|.......- .++...-..|-.|+-.|++|+..||+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555555544433 44555566677777777777777766
No 238
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=79.01 E-value=0.62 Score=54.65 Aligned_cols=104 Identities=23% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHH
Q 006482 300 TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER 379 (643)
Q Consensus 300 T~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ER 379 (643)
..|.-.+...++.+...-..+-.|...+.+++|.-....+.|-....+|+.+ +..+.+|.+-++.+|..|++|
T Consensus 615 ~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~-------i~~l~~eleE~~~~~~~~~ek 687 (859)
T PF01576_consen 615 QAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAE-------IQQLEEELEEEQSEAEAAEEK 687 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444333333444455556666666555555555555555554 355666777777777888888
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhhhHHHHhh
Q 006482 380 AKILASEVIGLEEKALRLRSNELKLERQLEN 410 (643)
Q Consensus 380 ak~LAaEVV~LEEk~l~LRS~eLKlerele~ 410 (643)
++...++|..|=+.+.+.|+..-++++.-.+
T Consensus 688 ~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~ 718 (859)
T PF01576_consen 688 AKKAQAQAAQLAEELRQEQDHNQHLEKEKKA 718 (859)
T ss_dssp -------------------------------
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887777777776666555554333
No 239
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=78.81 E-value=1.6e+02 Score=35.48 Aligned_cols=128 Identities=20% Similarity=0.297 Sum_probs=70.6
Q ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhH----HHHH
Q 006482 319 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL----EEKA 394 (643)
Q Consensus 319 sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~L----EEk~ 394 (643)
.|--||..|...++.-+..+..++.+|.--...-.-.+-.++.+..+-...|-+.+.+.+-.+.--.||-.. |+.+
T Consensus 496 kLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~ 575 (786)
T PF05483_consen 496 KLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENA 575 (786)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 344556666666666666666666666554444334444455555555555555555555555555555431 1112
Q ss_pred HHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482 395 LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 395 l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
+-.-...++.++++.-+.-.+.-++++|+. -...|+.||.|-|+|..++-.-
T Consensus 576 r~~e~e~~~k~kq~k~lenk~~~LrKqvEn-------k~K~ieeLqqeNk~LKKk~~aE 627 (786)
T PF05483_consen 576 RSIECEILKKEKQMKILENKCNNLRKQVEN-------KNKNIEELQQENKALKKKITAE 627 (786)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHH
Confidence 222223445555555555555555665553 3457888999988888766544
No 240
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=78.65 E-value=1.9e+02 Score=36.30 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=23.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006482 283 TKHNEDFAALEQHIEDLTQEKFALQRSLEASR 314 (643)
Q Consensus 283 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~ 314 (643)
.+-+++++++.+-|..|++++-.-.|.+....
T Consensus 230 ~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k 261 (1141)
T KOG0018|consen 230 EKANDELSRLNAEIPKLKERMDKKEREIRVRK 261 (1141)
T ss_pred hhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHH
Confidence 44567888888888888887777777666555
No 241
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.58 E-value=67 Score=33.12 Aligned_cols=43 Identities=28% Similarity=0.391 Sum_probs=26.9
Q ss_pred HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 006482 407 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 449 (643)
Q Consensus 407 ele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqsk 449 (643)
+|..++.+|..++.-+..++.||...+..|..+++|.+-|...
T Consensus 54 eLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~ 96 (230)
T PF10146_consen 54 ELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDE 96 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666666666666666666666666555543
No 242
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=78.41 E-value=81 Score=32.02 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHH
Q 006482 288 DFAALEQHIEDLTQ 301 (643)
Q Consensus 288 ~faaLqqhIeDLT~ 301 (643)
++..++..++.+..
T Consensus 81 ~l~~a~a~l~~~~~ 94 (334)
T TIGR00998 81 ALAKAEANLAALVR 94 (334)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 243
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.19 E-value=1.5e+02 Score=34.99 Aligned_cols=119 Identities=27% Similarity=0.371 Sum_probs=74.8
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh--------------hHHHHHHHhhhhhhHHHHHHHH
Q 006482 318 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES--------------FRNEYANVRLECNAADERAKIL 383 (643)
Q Consensus 318 esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~--------------l~aErdaArle~~aA~ERak~L 383 (643)
|+|-.|-.+=-.-||++ |-.|+-++.|+++++.--..+++. +..+|-+.+-+.-+--.|-.+|
T Consensus 92 esLLqESaakE~~yl~k---I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rl 168 (772)
T KOG0999|consen 92 ESLLQESAAKEEYYLQK---ILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARL 168 (772)
T ss_pred HHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666667765 444555566666555544444443 3556777777778888888888
Q ss_pred HHHHHhHHHH-------HHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhH-------H-----HhhhhhHHHHHHHHHHHH
Q 006482 384 ASEVIGLEEK-------ALRLRSNELKLERQLENSQSEISSYKKKISSL-------E-----KERQDFQSTIEALQEEKK 444 (643)
Q Consensus 384 AaEVV~LEEk-------~l~LRS~eLKlerele~l~~E~~s~~~qlssl-------e-----keR~~l~s~i~aLQEEKk 444 (643)
-.|--.|||. |-.||.+.+ |.++++.||.+++..++-+ . .|+ .|.-.+++||-|+.
T Consensus 169 lseYSELEEENIsLQKqVs~LR~sQV----EyEglkheikRleEe~elln~q~ee~~~Lk~IAek-QlEEALeTlq~ERe 243 (772)
T KOG0999|consen 169 LSEYSELEEENISLQKQVSNLRQSQV----EYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEK-QLEEALETLQQERE 243 (772)
T ss_pred HHHHHHHHHhcchHHHHHHHHhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHH
Confidence 8888777775 445555544 5678888888887655432 1 122 25566777776653
No 244
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.18 E-value=1.6e+02 Score=36.12 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006482 310 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 353 (643)
Q Consensus 310 L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 353 (643)
++.-+.....|--||+.|-..|-++-+...+|+++..-|+.++.
T Consensus 673 ~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 673 IENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334455666667777777777776777777777666666554
No 245
>PRK15396 murein lipoprotein; Provisional
Probab=78.08 E-value=7.1 Score=34.39 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=24.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH
Q 006482 330 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 381 (643)
Q Consensus 330 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak 381 (643)
+.++....|..|+.++.++.++ ...++....+|+.|+..|.+|--
T Consensus 26 kvd~LssqV~~L~~kvdql~~d-------v~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSND-------VNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555544 45555555566666666666643
No 246
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=78.01 E-value=1.9e+02 Score=36.12 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=18.1
Q ss_pred HHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 006482 405 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 442 (643)
Q Consensus 405 erele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEE 442 (643)
|.++.+.....+=++.|..-+.++-+.++..+.+||+.
T Consensus 193 ~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~ 230 (1109)
T PRK10929 193 ELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQ 230 (1109)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444445555555555543
No 247
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.97 E-value=1.3e+02 Score=34.15 Aligned_cols=99 Identities=20% Similarity=0.294 Sum_probs=74.6
Q ss_pred hhHHHHHHHhhhhhh-HHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhh----hHHHHHHHHHHhhhHHHhhhhhHHH
Q 006482 361 SFRNEYANVRLECNA-ADERAKILASEVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQST 435 (643)
Q Consensus 361 ~l~aErdaArle~~a-A~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~----l~~E~~s~~~qlsslekeR~~l~s~ 435 (643)
.+.+||+..+..... -..+-.+|.--||.||+-+-.||+.-+-.=..|.+ .++-+-.-+.++-.+++.+-.|+..
T Consensus 198 ~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ek 277 (446)
T KOG4438|consen 198 SLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEK 277 (446)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 457788887776665 67778888888999999998899887754444444 4444555566677778888889999
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCC
Q 006482 436 IEALQEEKKMMQSKLRKASGSGKS 459 (643)
Q Consensus 436 i~aLQEEKklLqskLRka~~~gk~ 459 (643)
|+.||-=++-++.-++++...+-.
T Consensus 278 v~~~qti~~e~~~~lk~i~~~~~e 301 (446)
T KOG4438|consen 278 VTNLQTIEKELKALLKKISSDGVE 301 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999998888888888888776643
No 248
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=77.85 E-value=95 Score=32.47 Aligned_cols=96 Identities=21% Similarity=0.241 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH-------HHHHHhHHHHHHHHhhhhhhhHHHHhhh
Q 006482 339 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLERQLENS 411 (643)
Q Consensus 339 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L-------AaEVV~LEEk~l~LRS~eLKlerele~l 411 (643)
.++...++++|.-.....-.++.-+..|..+-.+...|..|-... ..+|--+.+++. +-...+
T Consensus 115 K~~e~~~~KaQK~~~k~~k~v~~sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~----------k~~~~~ 184 (258)
T cd07680 115 KEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVD----------KCKQDV 184 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHH----------HHHHHH
Confidence 346778888888877888888888888887777777777653322 233322323222 222233
Q ss_pred HHHHHHHHHHhhhHHHhhhh----hHHHHHHHH--HHHH
Q 006482 412 QSEISSYKKKISSLEKERQD----FQSTIEALQ--EEKK 444 (643)
Q Consensus 412 ~~E~~s~~~qlsslekeR~~----l~s~i~aLQ--EEKk 444 (643)
..-...|+..|..|.+.+.+ +-.+++.+| ||++
T Consensus 185 ~~sk~~Y~~~l~~ln~~~~~y~~~m~~vfd~~Q~~Ee~R 223 (258)
T cd07680 185 QKTQEKYEKVLDDVGKTTPQYMENMEQVFEQCQQFEEKR 223 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33336688888888888764 677888998 5554
No 249
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=77.78 E-value=41 Score=28.20 Aligned_cols=76 Identities=21% Similarity=0.299 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 006482 308 RSLEASRALSESLAAENSSLTDSYNQQR-----SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 382 (643)
Q Consensus 308 R~L~~s~~l~esLa~ENsaLt~~yNqQ~-----~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~ 382 (643)
+.++....-.+.|-..-..+...+.... ..+.....-+..|...|..+...++.+..+...++..+.+|.-+.|+
T Consensus 12 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~ 91 (123)
T PF02050_consen 12 QELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKK 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555555 66666777777777777777777777777777777777777766666
Q ss_pred H
Q 006482 383 L 383 (643)
Q Consensus 383 L 383 (643)
+
T Consensus 92 ~ 92 (123)
T PF02050_consen 92 L 92 (123)
T ss_dssp H
T ss_pred H
Confidence 5
No 250
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=77.55 E-value=80 Score=31.48 Aligned_cols=41 Identities=5% Similarity=0.189 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH
Q 006482 341 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 381 (643)
Q Consensus 341 Lk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak 381 (643)
+++++.+.++.+..+.+.-..+..+++.++..+..=..||+
T Consensus 36 m~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~ 76 (219)
T TIGR02977 36 MEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAE 76 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555445555555555555544444443
No 251
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=77.52 E-value=88 Score=36.81 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=17.5
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 006482 381 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 423 (643)
Q Consensus 381 k~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qls 423 (643)
+-|........+++..|+-.-.++++.+..+..++..+.+.+.
T Consensus 230 ~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~ 272 (670)
T KOG0239|consen 230 KPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQ 272 (670)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444433333344444444444444444333
No 252
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=77.45 E-value=1.8e+02 Score=35.60 Aligned_cols=108 Identities=23% Similarity=0.359 Sum_probs=56.8
Q ss_pred HhhhHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhH-------
Q 006482 322 AENSSLTDSYNQQRSVVNQL----KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL------- 390 (643)
Q Consensus 322 ~ENsaLt~~yNqQ~~~v~qL----k~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~L------- 390 (643)
.||+.|.++.-+.-.++.+- ++++.|.|.++..+--++.+++.-||+-. +=-+.|--|+..|
T Consensus 980 ~e~sdLnekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~-------~~l~El~qEl~d~GV~AD~g 1052 (1480)
T COG3096 980 SENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKK-------ELLNELQQELQDIGVRADSG 1052 (1480)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-------HHHHHHHHHHHHhCCCcCcc
Confidence 56776666554433333221 23344444455555556666776666533 2333344444322
Q ss_pred -HHHHH-----------HHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHH
Q 006482 391 -EEKAL-----------RLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTI 436 (643)
Q Consensus 391 -EEk~l-----------~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i 436 (643)
|||+. .-|+-.-.+||++--...|+..+.+++..+++|-+.++..|
T Consensus 1053 AeeRA~~RRDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~V 1110 (1480)
T COG3096 1053 AEERARIRRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQV 1110 (1480)
T ss_pred hHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44443 33333334566666666677777777777766666655543
No 253
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=77.21 E-value=44 Score=36.63 Aligned_cols=112 Identities=14% Similarity=0.230 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--hhhhhhHHHHHHHHHHHH
Q 006482 312 ASRALSESLAAENSSLTDSYNQQR--SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV--RLECNAADERAKILASEV 387 (643)
Q Consensus 312 ~s~~l~esLa~ENsaLt~~yNqQ~--~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaA--rle~~aA~ERak~LAaEV 387 (643)
.++++++-|-.+-+.|..+-|..+ ..|-.-++++...++.++.-...|-.++.-+.-- ...+.-+..=.-.|-.|.
T Consensus 153 eaq~Iaqailkqse~lIN~Ls~rAr~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL 232 (372)
T COG3524 153 EAQKIAQAILKQSEKLINQLSERARRDTVRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDEL 232 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHH
Confidence 467788888888888877777543 2233333333222222222222222211111000 000011222223455566
Q ss_pred HhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 006482 388 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 423 (643)
Q Consensus 388 V~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qls 423 (643)
+.++.++.++||-.=-.-=++-+|+.+++++++++.
T Consensus 233 ~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~ 268 (372)
T COG3524 233 IVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLL 268 (372)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH
Confidence 666666666655432222344456666666655554
No 254
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.17 E-value=16 Score=41.38 Aligned_cols=75 Identities=24% Similarity=0.365 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh-hHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482 378 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS-SLEKERQDFQSTIEALQEEKKMMQSKLRK 452 (643)
Q Consensus 378 ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qls-slekeR~~l~s~i~aLQEEKklLqskLRk 452 (643)
+=-+.|.++|-.|+.++..+.++-=+|.+|-+.|+..-...+.++. +++.+|++++...+.|++|...++..|..
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788899999999888888777777777777776666666665 34567888888888888877666555443
No 255
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=76.98 E-value=57 Score=38.59 Aligned_cols=19 Identities=11% Similarity=0.429 Sum_probs=13.0
Q ss_pred ccccCccccchhhHHHHHh
Q 006482 516 LALEGLAVNIPHDQMRMIH 534 (643)
Q Consensus 516 ~~l~~~~vsIp~DQlRmI~ 534 (643)
+.+|+.-+.||.++|+.+.
T Consensus 653 V~~g~~k~~v~~~~l~~~~ 671 (771)
T TIGR01069 653 VTVGGMRMKVHGSELEKIN 671 (771)
T ss_pred EEECCEEEEEeHHHceecc
Confidence 5567777788887776544
No 256
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=76.93 E-value=25 Score=30.36 Aligned_cols=59 Identities=27% Similarity=0.300 Sum_probs=30.2
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 006482 325 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 383 (643)
Q Consensus 325 saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L 383 (643)
+.|-.+|++--..+..|+.++++|+++-.+-....+.++.|-...+.+.++..+|-+.|
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544444445555555555555555555554443
No 257
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=76.74 E-value=52 Score=38.95 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=10.1
Q ss_pred ccccCccccchhhHHHHH
Q 006482 516 LALEGLAVNIPHDQMRMI 533 (643)
Q Consensus 516 ~~l~~~~vsIp~DQlRmI 533 (643)
+..|+.-+.||.++|+-+
T Consensus 665 V~~g~~k~~v~~~~l~~~ 682 (782)
T PRK00409 665 VQAGIMKMKVPLSDLEKI 682 (782)
T ss_pred EEECCEEEEEeHHHceeC
Confidence 344555566666666544
No 258
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=76.73 E-value=64 Score=38.74 Aligned_cols=74 Identities=22% Similarity=0.306 Sum_probs=59.3
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 006482 367 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 443 (643)
Q Consensus 367 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEK 443 (643)
+-+-.+.-+|-|+.-.|-.|+-.+-.++.+++-.+=|+.+..+.|+.++..+++ +.+ ..++.|...+..-+++.
T Consensus 205 qlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~--~~~-~~~~~mrd~~~~~~e~~ 278 (916)
T KOG0249|consen 205 QLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR--SSL-EKEQELRDHLRTYAERR 278 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHH-hhhhhhcchhhhhHHHH
Confidence 456677788999999999999999999999999999999999999999999995 433 44555556666655554
No 259
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=76.50 E-value=60 Score=29.97 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=65.0
Q ss_pred ccccccccCCchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006482 275 ENQHGFYSTKHNED----FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 350 (643)
Q Consensus 275 e~~~~F~s~~~~~~----faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~ 350 (643)
-+|+.|....+..- -...+.-.+++..+.-.+.=.+.+++-+++.-..|-+.....+-+--..+.+++.+|+.|+.
T Consensus 23 k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~ 102 (139)
T PF05615_consen 23 KRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKE 102 (139)
T ss_pred HHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555443210 13345556777888888888888888888877777766666666666777788999998888
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhh
Q 006482 351 EIKVQLVELESFRNEYANVRLEC 373 (643)
Q Consensus 351 Ei~aQ~~~le~l~aErdaArle~ 373 (643)
++..-...+.. +.|||+.--.+
T Consensus 103 ~L~~ak~~r~~-k~eyd~La~~I 124 (139)
T PF05615_consen 103 ELEEAKRVRQN-KEEYDALAKKI 124 (139)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHH
Confidence 87665555544 34777644333
No 260
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=76.39 E-value=92 Score=35.54 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=14.2
Q ss_pred CccccccCCCCCccccccc
Q 006482 53 HDFVTKISPQNSVSTLFQS 71 (643)
Q Consensus 53 ~~~~~~is~q~s~~~~~q~ 71 (643)
--|.++-.|.-+..|-.|+
T Consensus 11 i~F~Ny~gp~~~~~t~~~i 29 (489)
T PF05262_consen 11 IEFINYSGPHASIETAQQI 29 (489)
T ss_pred eEEEecCCCCcchhHHHHH
Confidence 3677888888888887774
No 261
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=76.31 E-value=81 Score=30.88 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhC
Q 006482 435 TIEALQEEKKMMQSKLRKASG 455 (643)
Q Consensus 435 ~i~aLQEEKklLqskLRka~~ 455 (643)
-|..++.++..|..+.+.+-+
T Consensus 127 kl~e~k~k~~~l~ar~~~a~a 147 (221)
T PF04012_consen 127 KLEELKSKREELKARENAAKA 147 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 262
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=76.31 E-value=64 Score=29.70 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=24.2
Q ss_pred HHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHH
Q 006482 405 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 444 (643)
Q Consensus 405 erele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKk 444 (643)
+..+..+..++..++..+-.+.++|..|..+++.-.++-+
T Consensus 84 ~~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek~~~~~~ 123 (147)
T PRK05689 84 RQQLTQWTQKVDNARKYWQEKKQRLEALETLQERYQTEAR 123 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666666665554443
No 263
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=76.20 E-value=54 Score=36.37 Aligned_cols=96 Identities=24% Similarity=0.339 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhh
Q 006482 325 SSLTDSYNQQRSVVNQLKSEMEKLQEEIK-VQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 403 (643)
Q Consensus 325 saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~-aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLK 403 (643)
.++-+..++-......|..+++.|+.+++ ....-.+++.+||.+ .-.|||++-.+ -+|-
T Consensus 215 ~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R------------------~erLEeqlNd~--~elH 274 (395)
T PF10267_consen 215 QKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYR------------------YERLEEQLNDL--TELH 274 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------------------HHHHHHHHHHH--HHHH
Q ss_pred hHHHHhhhHHHHHHHHHHhhhHHHhh-hhhHHHHHHHHH
Q 006482 404 LERQLENSQSEISSYKKKISSLEKER-QDFQSTIEALQE 441 (643)
Q Consensus 404 lerele~l~~E~~s~~~qlsslekeR-~~l~s~i~aLQE 441 (643)
+.|+.+|+.++...+.|+.=..-|| .+++..|+.||.
T Consensus 275 -q~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qt 312 (395)
T PF10267_consen 275 -QNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQT 312 (395)
T ss_pred -HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHH
No 264
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.17 E-value=17 Score=32.18 Aligned_cols=58 Identities=21% Similarity=0.345 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH
Q 006482 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE 344 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~ 344 (643)
|-++-||=.|++|-+++-.|+...+-++.--|.|..||+.|...-+.-...+-.|-.+
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677777888888777777777777777777777766654443333333333333
No 265
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=75.65 E-value=1.1e+02 Score=31.96 Aligned_cols=157 Identities=19% Similarity=0.280 Sum_probs=88.5
Q ss_pred cccccc-CCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------Hh----hhHHHHHHHHhhHHHH--
Q 006482 277 QHGFYS-TKHNEDFAALEQHIEDLTQEKFA----LQRSLEASRALSESLA------AE----NSSLTDSYNQQRSVVN-- 339 (643)
Q Consensus 277 ~~~F~s-~~~~~~faaLqqhIeDLT~EKfa----LqR~L~~s~~l~esLa------~E----NsaLt~~yNqQ~~~v~-- 339 (643)
|.-|-. +..+++|..+.++|+.|.+-==. .+|-..+..++.+.++ .. ...|.+-++.-++.|.
T Consensus 43 ~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~ 122 (243)
T cd07666 43 ASSVRGVKNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRC 122 (243)
T ss_pred HHhccccCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 444432 77899999999999988653222 3444444445544432 22 4448889999888888
Q ss_pred --HHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHhhhhhhHHH--------HHHHHHHHHHhHHHHHHHHhhhhh
Q 006482 340 --QLKSEMEKLQEEI-------KVQLVELESFRNEYANVRLECNAADE--------RAKILASEVIGLEEKALRLRSNEL 402 (643)
Q Consensus 340 --qLk~~mE~Lq~Ei-------~aQ~~~le~l~aErdaArle~~aA~E--------Rak~LAaEVV~LEEk~l~LRS~eL 402 (643)
.+...+..+...+ ..+..++.++-.+|+.+|++.....| | ..+..||-.||+|+.+. +..
T Consensus 123 ~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr-~~~~~ev~~~e~kve~a-~~~- 199 (243)
T cd07666 123 CKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADR-DLLKEEIEKLEDKVECA-NNA- 199 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHH-HHH-
Confidence 6666555554432 23334445556688877776654432 4 34555666666666655 222
Q ss_pred hhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006482 403 KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 450 (643)
Q Consensus 403 Klerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskL 450 (643)
++.|+.+++++- +.+|...+...=|--..+|.++
T Consensus 200 --------~k~e~~Rf~~~k------~~D~k~~~~~yae~~i~~~~~~ 233 (243)
T cd07666 200 --------LKADWERWKQNM------QTDLRSAFTDMAENNISYYEEC 233 (243)
T ss_pred --------HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 334555554433 2345555554444444444433
No 266
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=75.40 E-value=86 Score=36.43 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006482 306 LQRSLEASRALSESLAAENSSLTDSY 331 (643)
Q Consensus 306 LqR~L~~s~~l~esLa~ENsaLt~~y 331 (643)
|-+.|.++++..+.|.+|-+.+...|
T Consensus 314 l~~~l~k~ke~n~~L~~Eie~V~~sY 339 (570)
T COG4477 314 LPDYLEKAKENNEHLKEEIERVKESY 339 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666666666666666
No 267
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.36 E-value=1.1e+02 Score=34.95 Aligned_cols=28 Identities=32% Similarity=0.259 Sum_probs=15.7
Q ss_pred cCCCCCccCCcccccccccCCCCCCCCc
Q 006482 16 YDSSNSSKSGFQGIEESQSKGNDSFPKV 43 (643)
Q Consensus 16 ~~~~~~s~~~~~~~~~~Qs~~~~sslK~ 43 (643)
|-|.|++..--||+.-+=.+-.-+++|.
T Consensus 43 ~~sgnp~ve~t~GiiHLyk~n~~~s~~~ 70 (493)
T KOG0804|consen 43 YSSGNPSVEETHGIIHLYKKNSHSSLKN 70 (493)
T ss_pred ccCCCCceeeeceeEEEEecCccccccc
Confidence 3445566666666666555555555554
No 268
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=74.87 E-value=61 Score=28.77 Aligned_cols=30 Identities=7% Similarity=0.098 Sum_probs=16.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006482 327 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 356 (643)
Q Consensus 327 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~ 356 (643)
+...||+-...+..|...+.+|+.++.-..
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~ 33 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENK 33 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665555555555544443333
No 269
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=74.59 E-value=20 Score=37.79 Aligned_cols=66 Identities=27% Similarity=0.368 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhh
Q 006482 339 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS 411 (643)
Q Consensus 339 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l 411 (643)
.++|.+++.++.|-. .+..|....+.++++-.||-|.|--|--.|||+..++--..-+|++..++|
T Consensus 138 ee~kekl~E~~~Eke-------eL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 138 EELKEKLEELQKEKE-------ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 444444444444433 333344444445567889999999999999998876533333444443333
No 270
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.42 E-value=55 Score=32.42 Aligned_cols=79 Identities=18% Similarity=0.318 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhhHHHHH--------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhH
Q 006482 311 EASRALSESLAAENSSLTDS--------------YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA 376 (643)
Q Consensus 311 ~~s~~l~esLa~ENsaLt~~--------------yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA 376 (643)
..-.++.++|.+|+=--+++ .++....+..|+.+++.++.+|..-...++..+.+| .+-
T Consensus 30 ~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r-------~~~ 102 (188)
T PF03962_consen 30 MSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR-------EES 102 (188)
T ss_pred hhHHHHHHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------ccc
Confidence 44578899999987554443 455555666666666666665555555555444444 334
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 006482 377 DERAKILASEVIGLEEKALRL 397 (643)
Q Consensus 377 ~ERak~LAaEVV~LEEk~l~L 397 (643)
.||...| .+.-.|++++.+|
T Consensus 103 ~eR~~~l-~~l~~l~~~~~~l 122 (188)
T PF03962_consen 103 EEREELL-EELEELKKELKEL 122 (188)
T ss_pred HHHHHHH-HHHHHHHHHHHHH
Confidence 6776643 3444444444433
No 271
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=74.35 E-value=22 Score=31.81 Aligned_cols=60 Identities=23% Similarity=0.372 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Q 006482 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 346 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE 346 (643)
|.++-||--|++|-+++..|....+.++.--+.|..||..|...-|.=-..+..|=..|+
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456677777888888888887777777777777777777777666666666665555553
No 272
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=74.20 E-value=99 Score=30.92 Aligned_cols=148 Identities=11% Similarity=0.160 Sum_probs=90.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006482 283 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 362 (643)
Q Consensus 283 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 362 (643)
+..+.+|..+...|+.|..-=-.+.|..+|-.+=...|+.+...+-..||..+..=..|.+-+++.=+-+......++.+
T Consensus 10 ~~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~ 89 (201)
T cd07622 10 RNPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNG 89 (201)
T ss_pred CCCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888765444555554444444556667777888888776666666666555444444433333332
Q ss_pred ----------HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhh
Q 006482 363 ----------RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF 432 (643)
Q Consensus 363 ----------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l 432 (643)
--||...-.....+.-+-...-.+...+++.+-+.+.+ ++.+++.++.+.+.+..++.
T Consensus 90 ~~~~~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~~~L~~k~~~---l~~~ve~a~~~~e~f~~~~~--------- 157 (201)
T cd07622 90 LEDEELIADQLKEYLFFADSLRAVCKKHELLQYDLEKAEDALANKKQQ---GEEAVKEAKDELNEFVKKAL--------- 157 (201)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---------
Confidence 33555555555555556566666677777766666544 57777777766666665554
Q ss_pred HHHHHHHHHHH
Q 006482 433 QSTIEALQEEK 443 (643)
Q Consensus 433 ~s~i~aLQEEK 443 (643)
..++.-|++|
T Consensus 158 -~E~~rF~~~K 167 (201)
T cd07622 158 -EDVERFKKQK 167 (201)
T ss_pred -HHHHHHHHHH
Confidence 3555555555
No 273
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=74.20 E-value=99 Score=30.91 Aligned_cols=57 Identities=18% Similarity=0.382 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006482 295 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 351 (643)
Q Consensus 295 hIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 351 (643)
.|.-|-+|--.+.+-.++....+..+..||-.|+.---.....+.+|+.++..++.+
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd 84 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD 84 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556666777778888999999988887766666666666666655543
No 274
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=74.07 E-value=1.6e+02 Score=34.27 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=11.3
Q ss_pred cccCCCCCcccccccCCC
Q 006482 57 TKISPQNSVSTLFQSKPS 74 (643)
Q Consensus 57 ~~is~q~s~~~~~q~~~s 74 (643)
-..+|.=.+++..|+++.
T Consensus 50 ~~~tP~Y~a~a~l~I~~~ 67 (726)
T PRK09841 50 LLSTPIYQADTLVQVEQK 67 (726)
T ss_pred HhCCceeeeeEEEEEecC
Confidence 445566667777776554
No 275
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=73.68 E-value=1.9e+02 Score=34.67 Aligned_cols=49 Identities=22% Similarity=0.347 Sum_probs=34.3
Q ss_pred HHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482 405 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 405 erele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
+.++..+...+..+++.+.+++-.|...-+.+-+.|-|...|+..|+++
T Consensus 161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~ 209 (739)
T PF07111_consen 161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKT 209 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666677777777777777777777777777777777766665
No 276
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=73.54 E-value=1e+02 Score=31.46 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHH
Q 006482 411 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 448 (643)
Q Consensus 411 l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqs 448 (643)
....-...+.++.+|+.+|..++.-++.||..-+.|+.
T Consensus 145 va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 145 VAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566666666666666666666666666665
No 277
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=73.51 E-value=17 Score=32.16 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh--h--hhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR--L--ECNAADERAKILASEVIGLEEKALRLR 398 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaAr--l--e~~aA~ERak~LAaEVV~LEEk~l~LR 398 (643)
.-.+|+.++.+||..++-+.....++..=..... + ........++.|=.||..||+.|..|-
T Consensus 9 ~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE 74 (88)
T PF14389_consen 9 RRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLE 74 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4467888898888888877776666632222211 1 123556789999999999999998763
No 278
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=73.37 E-value=35 Score=36.23 Aligned_cols=64 Identities=31% Similarity=0.467 Sum_probs=47.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006482 283 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 353 (643)
Q Consensus 283 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 353 (643)
..|....+-+++.|.|||+|---|+-.-+.-|++++.|-.+|-.|. ..++.|..++-.+.+.-+
T Consensus 86 DrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~-------~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 86 DRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELD-------SELELLRQELAELKQQQQ 149 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHhhHHHHH
Confidence 3456778889999999999999998888888888888877776654 445555555555554433
No 279
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=73.27 E-value=1.1e+02 Score=31.16 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=32.2
Q ss_pred HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhH
Q 006482 358 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 425 (643)
Q Consensus 358 ~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssl 425 (643)
.+..+..|||.|....+.....---|-.-.--+-+-+.-+|.+|=+|.+.++.....+...+.+..+|
T Consensus 70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQAL 137 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666655555333222222222223333344556666666666655555554444444433
No 280
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=72.94 E-value=1.1e+02 Score=30.78 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006482 290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 369 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaA 369 (643)
..++.+++-+...+-.+...|.++++.=+....|.+.+...|..+..-+ -+.++|+++.-+.--.......+.+|..+
T Consensus 102 K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~--~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~ 179 (239)
T cd07647 102 KKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGA--QPKEAEKLKKKAAQCKTSAEEADSAYKSS 179 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666667777777777777777777777777776665432 24566777666555555556667777776
Q ss_pred hhhhhhHH
Q 006482 370 RLECNAAD 377 (643)
Q Consensus 370 rle~~aA~ 377 (643)
....+.+.
T Consensus 180 v~~l~~~~ 187 (239)
T cd07647 180 IGCLEDAR 187 (239)
T ss_pred HHHHHHHH
Confidence 66655554
No 281
>PRK02119 hypothetical protein; Provisional
Probab=72.90 E-value=30 Score=29.78 Aligned_cols=57 Identities=23% Similarity=0.204 Sum_probs=33.3
Q ss_pred HHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCC
Q 006482 386 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGS 456 (643)
Q Consensus 386 EVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~~ 456 (643)
|...||+|+..|=+.--=.+..++.|+..+-. -+..|+.|+.+-++|..||+.+..+
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~--------------Qq~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIE--------------QQFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34456666655533223335555555544333 3345677888888999999887544
No 282
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=72.56 E-value=51 Score=38.08 Aligned_cols=138 Identities=24% Similarity=0.275 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHH-------hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh------------HHHHHH
Q 006482 308 RSLEASRALSESLAA-------ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF------------RNEYAN 368 (643)
Q Consensus 308 R~L~~s~~l~esLa~-------ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l------------~aErda 368 (643)
|+|+-+-++-+.|-. .|+.|-++.|+--..|.+|+-++-|--.-+.++-.+.+-= -.+|.+
T Consensus 76 ~dlElaAkiGqsllk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~ 155 (596)
T KOG4360|consen 76 RDLELAAKIGQSLLKANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSA 155 (596)
T ss_pred chhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeeccccccccccccCCCccCcchhh
Confidence 556666666555544 4444555556666666666655544333333332222111 122333
Q ss_pred Hhhhh-hhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhh----hHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 006482 369 VRLEC-NAADERAKILASEVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIEALQEEK 443 (643)
Q Consensus 369 Arle~-~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~----l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEK 443 (643)
.+-+. .+-.|+-|.+-.|.+.|--||..+|-+++.-+-.-.. ...+.+-++.|+.++.++=+..-.-+..+|||-
T Consensus 156 ~~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~ 235 (596)
T KOG4360|consen 156 FQRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEEN 235 (596)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 2345677777777777777777776665543222111 334555566666666666666555666666665
Q ss_pred HH
Q 006482 444 KM 445 (643)
Q Consensus 444 kl 445 (643)
-.
T Consensus 236 sk 237 (596)
T KOG4360|consen 236 SK 237 (596)
T ss_pred HH
Confidence 33
No 283
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=72.50 E-value=32 Score=38.01 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEY 366 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 366 (643)
.+.+|+.++++|+.+++.....++.+.+.+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677666666655555555554444
No 284
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=72.45 E-value=1.2e+02 Score=34.78 Aligned_cols=212 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred ccccccccccccCCchhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhHHHHHHHHhh
Q 006482 271 ESSIENQHGFYSTKHNEDFAALE-------QHIEDLTQEKFALQRSLEASRAL--------SESLAAENSSLTDSYNQQR 335 (643)
Q Consensus 271 E~~~e~~~~F~s~~~~~~faaLq-------qhIeDLT~EKfaLqR~L~~s~~l--------~esLa~ENsaLt~~yNqQ~ 335 (643)
|.-+++-++|+-.+.-.-+..|| --++.|-+|+..|.-.|++-++- ++.|.+|-.-|..+| .|-
T Consensus 149 Eq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~Kl-Dqp 227 (552)
T KOG2129|consen 149 EQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKL-DQP 227 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCc
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhh
Q 006482 336 SVVNQLKSEME----KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS 411 (643)
Q Consensus 336 ~~v~qLk~~mE----~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l 411 (643)
..---+-+|+- .-=.+-.+-.+-..-+++|..+.|..|-.|.-... ||.+|+|-+|.-.+.+.+.+
T Consensus 228 vs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~----------ek~~qy~~Ee~~~reen~rl 297 (552)
T KOG2129|consen 228 VSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQ----------EKLMQYRAEEVDHREENERL 297 (552)
T ss_pred ccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCcccccccccccccccccCccccCCCC
Q 006482 412 QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQ 491 (643)
Q Consensus 412 ~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~~gk~~~~~k~~~~~kDASTSTdDLai~d~~~~sSn~ 491 (643)
+ +.+...++ -+..+-.+-+|+..++.++-.+-.||-+ +..-...-.--||++.- .++..|..
T Consensus 298 Q---rkL~~e~e--------rRealcr~lsEsesslemdeery~Ne~~-~~g~s~~Va~~asas~~------~~~sas~~ 359 (552)
T KOG2129|consen 298 Q---RKLINELE--------RREALCRMLSESESSLEMDEERYLNEFV-DFGDSVEVALHASASQK------YNGSASPN 359 (552)
T ss_pred H---HHHHHHHH--------HHHHHHHHhhhhhHHHHHHHHHHHhhhh-ccCCceeeecccchhhh------CCCCCCCc
Q ss_pred CcccCCCCCCCCCCCCCCCC
Q 006482 492 DTHDDASLPRIDASGSTLLP 511 (643)
Q Consensus 492 e~~~s~s~~~~~~~~~P~~P 511 (643)
-.+++-...++.-...|.-|
T Consensus 360 vs~~sPvs~t~s~~s~~~SP 379 (552)
T KOG2129|consen 360 VSANSPVSNTNSPASSTSSP 379 (552)
T ss_pred cccCCCcccCCCcccccCCC
No 285
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=72.30 E-value=41 Score=41.56 Aligned_cols=60 Identities=23% Similarity=0.365 Sum_probs=39.3
Q ss_pred HHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHH
Q 006482 386 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 446 (643)
Q Consensus 386 EVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklL 446 (643)
++-..|+++-. |-.-++..-+..+.+..++..++.+..++++-..+...|+.|+.+.+.+
T Consensus 277 ~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av 336 (1141)
T KOG0018|consen 277 KISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAV 336 (1141)
T ss_pred HHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33344444444 4445555666666667777777777888888888888888887766443
No 286
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=72.09 E-value=88 Score=32.19 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=7.5
Q ss_pred HHHHHHHhhhhhhHHH
Q 006482 363 RNEYANVRLECNAADE 378 (643)
Q Consensus 363 ~aErdaArle~~aA~E 378 (643)
+.||+.++.+...|..
T Consensus 144 ~~~~~~~~~~~~~a~~ 159 (331)
T PRK03598 144 ANDLENARSSRDQAQA 159 (331)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555544444433
No 287
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=71.26 E-value=61 Score=38.10 Aligned_cols=40 Identities=20% Similarity=0.421 Sum_probs=19.1
Q ss_pred HHHHhHHHHHHHHhh---hhhhhHHHHhhhHHHHHHHHHHhhh
Q 006482 385 SEVIGLEEKALRLRS---NELKLERQLENSQSEISSYKKKISS 424 (643)
Q Consensus 385 aEVV~LEEk~l~LRS---~eLKlerele~l~~E~~s~~~qlss 424 (643)
.|+-.||.+|-++|- .+++-.++++.+..+|.++++++..
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 445555555544432 2233344555555555555555554
No 288
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=71.20 E-value=1.3e+02 Score=31.03 Aligned_cols=151 Identities=14% Similarity=0.201 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 006482 304 FALQRSLEASRALSESLAAENSSLTDSYNQQRSV------------VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 371 (643)
Q Consensus 304 faLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~------------v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArl 371 (643)
+.+.++-.-.-.=++.+|+.++.+.+..+-+-.. -..+-.+.+.++.++......|+..+..|+.|-.
T Consensus 63 ~t~~~aw~~~l~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~ack 142 (253)
T cd07676 63 YTSCRAFLMTLNEMNDYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCK 142 (253)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444556677777766666443211 1112234567888889999999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhh-----hhhHHHHHHHH--HHHH
Q 006482 372 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER-----QDFQSTIEALQ--EEKK 444 (643)
Q Consensus 372 e~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR-----~~l~s~i~aLQ--EEKk 444 (643)
+...|..+-...-+....=.+++.++|..--+-..+++.. ...|..+|..+-+.- .+|-.+++.|| ||+|
T Consensus 143 e~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~e~a---Kn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~R 219 (253)
T cd07676 143 EADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDS---KAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERR 219 (253)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888887654432221111112222222222222222322 245666666664443 56888899999 5554
Q ss_pred H--HHHHHHhhhCCC
Q 006482 445 M--MQSKLRKASGSG 457 (643)
Q Consensus 445 l--LqskLRka~~~g 457 (643)
. |..=|.+++.-+
T Consensus 220 i~~l~e~l~~~~~~e 234 (253)
T cd07676 220 IGRVGESMKTYAEVD 234 (253)
T ss_pred HHHHHHHHHHHHHHH
Confidence 3 334444444433
No 289
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=71.04 E-value=8 Score=37.59 Aligned_cols=85 Identities=22% Similarity=0.343 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006482 290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 369 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaA 369 (643)
-+|++|+..|+.+|-.|...+ ..|..||..|-+.+-.....+-+=+..+.+|.++++--.--+...+.|-+..
T Consensus 11 ~~l~~~L~~l~~erqkl~~qv-------~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~~~ 83 (181)
T PF09311_consen 11 RALQQHLQSLEAERQKLRAQV-------RRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLIES 83 (181)
T ss_dssp HHHHHHHHHHHHCCHHHHT-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhcccccccc
Confidence 367889999998887665544 4577788888887765444442223333444443332222233345555555
Q ss_pred hhhhhhHHHHHH
Q 006482 370 RLECNAADERAK 381 (643)
Q Consensus 370 rle~~aA~ERak 381 (643)
+..+.++.++.+
T Consensus 84 ~~~~e~~e~~~~ 95 (181)
T PF09311_consen 84 RTAAEHEEEKLR 95 (181)
T ss_dssp ------------
T ss_pred chhhhhhhhccc
Confidence 665666666554
No 290
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=70.95 E-value=1.3e+02 Score=30.89 Aligned_cols=126 Identities=19% Similarity=0.283 Sum_probs=74.7
Q ss_pred HHHHHHHhhhHHHHHHHHh-h-----------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 006482 316 LSESLAAENSSLTDSYNQQ-R-----------SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 383 (643)
Q Consensus 316 l~esLa~ENsaLt~~yNqQ-~-----------~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L 383 (643)
=++.+|.....+.+.|+-+ . .+.....+...++++|+....-+|...+-.|..+..++..|.+-.+..
T Consensus 78 qt~~~a~~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~a 157 (241)
T cd07656 78 QTKQESRDHSTLSDIYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEA 157 (241)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777653 1 222334455667788888888888888999988888887776666554
Q ss_pred HHHHHhHHH---HHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHH
Q 006482 384 ASEVIGLEE---KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 444 (643)
Q Consensus 384 AaEVV~LEE---k~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKk 444 (643)
.+..--.+. .-.+.+..--|++++++..+ .+|..+...+.+-|-+-...|.+....+.
T Consensus 158 e~~~~k~~~~~~~~~~~~~~~~~~~~~~eK~k---~k~~~~~~k~~~akNeYll~l~~aN~~~~ 218 (241)
T cd07656 158 EKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQ---AKYSEAKLKCTKARNEYLLNLAAANATIH 218 (241)
T ss_pred HHHHhhcccccccchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433211100 11122233334566666555 34444555555667777777777766553
No 291
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=70.68 E-value=1.3e+02 Score=34.02 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 006482 338 VNQLKSEMEKLQEEI 352 (643)
Q Consensus 338 v~qLk~~mE~Lq~Ei 352 (643)
...|..+.+.|.+||
T Consensus 48 ~~~L~~~~~~l~~eI 62 (593)
T PF06248_consen 48 AKDLIERSKSLAREI 62 (593)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444455555
No 292
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=70.53 E-value=48 Score=35.09 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006482 290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 369 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaA 369 (643)
.=+++.++++..+--..+..|+..++....|-+.-..|...|........+|+.+++..+.-+..-.--+..|..|+.+=
T Consensus 217 ~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW 296 (344)
T PF12777_consen 217 EPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERW 296 (344)
T ss_dssp CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhH
Confidence 34667788888887788888888888888888888888888888888888888888777777666666667777777665
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 006482 370 RLECNAADERAKILASEVI 388 (643)
Q Consensus 370 rle~~aA~ERak~LAaEVV 388 (643)
......-.++.+.|--.++
T Consensus 297 ~~~~~~l~~~~~~l~GD~l 315 (344)
T PF12777_consen 297 SEQIEELEEQLKNLVGDSL 315 (344)
T ss_dssp HCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHH
Confidence 5555555555554444443
No 293
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=70.30 E-value=1.3e+02 Score=30.52 Aligned_cols=50 Identities=28% Similarity=0.354 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHhh
Q 006482 286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA--------ENSSLTDSYNQQR 335 (643)
Q Consensus 286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~--------ENsaLt~~yNqQ~ 335 (643)
.+.+..||+|..+|-..=-+|-|..++-+.-.+.||. ||..|.+-+-.-+
T Consensus 10 ~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~la 67 (211)
T cd07598 10 QERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFA 67 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4678899999999999888898888888877777765 4555554444444
No 294
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=70.19 E-value=92 Score=28.83 Aligned_cols=73 Identities=23% Similarity=0.272 Sum_probs=30.2
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHH
Q 006482 317 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 396 (643)
Q Consensus 317 ~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~ 396 (643)
++.||..|-++-.++..++..+.++..++..|+.+ ......+++.+...+.-..=++ .|-..|...|+.+-.
T Consensus 43 n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~-------~~~k~~~~~~l~~~~s~~~l~~-~L~~~~~e~eeeSe~ 114 (150)
T PF07200_consen 43 NEELAEQNLSLEPELEELRSQLQELYEELKELESE-------YQEKEQQQDELSSNYSPDALLA-RLQAAASEAEEESEE 114 (150)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHccCCHHHHHH-HHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333 3333334444433333222222 255556666666655
Q ss_pred H
Q 006482 397 L 397 (643)
Q Consensus 397 L 397 (643)
+
T Consensus 115 l 115 (150)
T PF07200_consen 115 L 115 (150)
T ss_dssp H
T ss_pred H
Confidence 5
No 295
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.02 E-value=1.6e+02 Score=36.10 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=32.4
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh
Q 006482 361 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 399 (643)
Q Consensus 361 ~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS 399 (643)
-..+|++-.+++..+-.+--..|+-|--.|++++.+--+
T Consensus 483 ~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~ 521 (1118)
T KOG1029|consen 483 LMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS 521 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 347788888888888888889999999999999887544
No 296
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=69.80 E-value=23 Score=29.84 Aligned_cols=46 Identities=30% Similarity=0.422 Sum_probs=30.3
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 006482 315 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 372 (643)
Q Consensus 315 ~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle 372 (643)
+=++.|..+.+.|..+.++....|+.|+.++...++| ++|+|.|+.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E------------AaRAN~RlD 48 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEE------------AARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
Confidence 3456777777777777777777777777666544443 566666654
No 297
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.42 E-value=1.4e+02 Score=30.76 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006482 335 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 368 (643)
Q Consensus 335 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErda 368 (643)
...+.+++.+|+.|.+|..++.-+|-.+..++..
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~ 64 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQINQDINT 64 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777666665544
No 298
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=68.97 E-value=1.5e+02 Score=30.87 Aligned_cols=138 Identities=10% Similarity=0.118 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH--------------HHHHHHHHHHHHHHHH----HHH
Q 006482 296 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVV--------------NQLKSEMEKLQEEIKV----QLV 357 (643)
Q Consensus 296 IeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v--------------~qLk~~mE~Lq~Ei~a----Q~~ 357 (643)
-.+|.+-=..|.-.|..-.++++-|+.+...+.+.+=+=|-++ +.+-.-|+++-..++. ..-
T Consensus 56 F~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~ 135 (243)
T cd07666 56 FTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSE 135 (243)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666678888999999999999988877766665444433 3344455533333322 222
Q ss_pred HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHH
Q 006482 358 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 437 (643)
Q Consensus 358 ~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~ 437 (643)
.+...-.||-.+....-+.--+=-.+-.++-.++|-.-+. +.+-+.+..|++.++.+++.+.++ +...++
T Consensus 136 ~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~-------~~dr~~~~~ev~~~e~kve~a~~~---~k~e~~ 205 (243)
T cd07666 136 QLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANK-------KADRDLLKEEIEKLEDKVECANNA---LKADWE 205 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 3333344555554444333222223344444444444333 232346777778888888777555 566777
Q ss_pred HHHHHH
Q 006482 438 ALQEEK 443 (643)
Q Consensus 438 aLQEEK 443 (643)
+-|++|
T Consensus 206 Rf~~~k 211 (243)
T cd07666 206 RWKQNM 211 (243)
T ss_pred HHHHHH
Confidence 777777
No 299
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=68.58 E-value=1.4e+02 Score=33.80 Aligned_cols=40 Identities=33% Similarity=0.415 Sum_probs=21.8
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006482 288 DFAALEQHIED----LTQEKFALQRSLEASRALSESLAAENSSLTDS 330 (643)
Q Consensus 288 ~faaLqqhIeD----LT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~ 330 (643)
|++.+..--+. ||..=-.|-|.| +.=.+.+|.||+.|-++
T Consensus 264 el~siRr~Cd~lP~~m~tKveelar~L---r~~I~~VarENs~LqrQ 307 (442)
T PF06637_consen 264 ELESIRRTCDHLPKIMTTKVEELARSL---RAGIERVARENSDLQRQ 307 (442)
T ss_pred hHHHHHHHHhhchHHHHHHHHHHHHHH---hhhHHHHHHhhhHHHHH
Confidence 46666654443 333333344444 44567778888776543
No 300
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=68.53 E-value=1e+02 Score=32.68 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHh
Q 006482 286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQ------RSVVNQLKSEMEKLQEEIKVQLVEL 359 (643)
Q Consensus 286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ------~~~v~qLk~~mE~Lq~Ei~aQ~~~l 359 (643)
......|++-++||.+-|-.-..-|+...++-+.=+.|.+.+-.+|-.+ ...-..|..++.+++.-++.-...-
T Consensus 71 ~gG~~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~rWtr~pS~~~~~~l~~~i~~~r~~L~~A~~sD 150 (339)
T cd09238 71 SGGLAALEGELPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGTAWTRPPSATLTKNLWERLNRFRVNLEQAGDSD 150 (339)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4557899999999999999999999999999999899999999888552 2233478888877777655544444
Q ss_pred hhhHHHHH
Q 006482 360 ESFRNEYA 367 (643)
Q Consensus 360 e~l~aErd 367 (643)
..++.-+.
T Consensus 151 ~~v~~k~~ 158 (339)
T cd09238 151 ESLRRRIE 158 (339)
T ss_pred HHHHHHHH
Confidence 44443333
No 301
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=67.95 E-value=1.7e+02 Score=31.48 Aligned_cols=8 Identities=13% Similarity=0.052 Sum_probs=4.2
Q ss_pred hhCCCCCc
Q 006482 453 ASGSGKSI 460 (643)
Q Consensus 453 a~~~gk~~ 460 (643)
++..|.+.
T Consensus 220 AP~dG~V~ 227 (390)
T PRK15136 220 SPMTGYVS 227 (390)
T ss_pred CCCCeEEE
Confidence 35556543
No 302
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=67.84 E-value=3.8 Score=36.46 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=9.3
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006482 322 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 352 (643)
Q Consensus 322 ~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 352 (643)
.+|..|..+-+.....+.+++...+.|++.+
T Consensus 39 ~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 39 RENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 5555555555555566666666666666543
No 303
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.56 E-value=2.6e+02 Score=32.93 Aligned_cols=89 Identities=24% Similarity=0.254 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 006482 294 QHIEDLTQEKFALQRSLEASR---ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 370 (643)
Q Consensus 294 qhIeDLT~EKfaLqR~L~~s~---~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaAr 370 (643)
.-|+-|-.+-..|.--++.|. +=++..-.|+.+|.+..|.-+.....|..++=.+..+++.+--+++..-.+++-++
T Consensus 308 eE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~ 387 (581)
T KOG0995|consen 308 EEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLI 387 (581)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444442 33455667777788888887777777777777777777777777777777776655
Q ss_pred hhhhhH-HHHHHH
Q 006482 371 LECNAA-DERAKI 382 (643)
Q Consensus 371 le~~aA-~ERak~ 382 (643)
....-- -++++-
T Consensus 388 ~~i~l~~~~~~~n 400 (581)
T KOG0995|consen 388 RRIKLGIAENSKN 400 (581)
T ss_pred HHHHHHHHHHhcc
Confidence 554433 444443
No 304
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=67.54 E-value=2.2e+02 Score=32.16 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006482 290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAE 323 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~E 323 (643)
..+++-++++..++-.+++-++..+.-.+.|-.-
T Consensus 171 ~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~ 204 (563)
T TIGR00634 171 LKARQQLKDRQQKEQELAQRLDFLQFQLEELEEA 204 (563)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC
Confidence 3334444444445555555555555544444433
No 305
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=67.21 E-value=1.4e+02 Score=30.56 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=35.2
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHhHHH-HHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 006482 366 YANVRLECNAADERAKILASEVIGLEE-KALRLRSNELKLERQLENSQSEISSYKKKIS 423 (643)
Q Consensus 366 rdaArle~~aA~ERak~LAaEVV~LEE-k~l~LRS~eLKlerele~l~~E~~s~~~qls 423 (643)
+.+|..+....-+|+..+|..||++=- ++-++-+.. |...+.++++....-++.++.
T Consensus 83 ~~~a~~ea~~il~~a~~~a~~v~~~a~~~a~~~~~~a-~~~~e~e~~~~q~~~~~~rl~ 140 (212)
T COG3599 83 KQAAEAEADDILKRASAQAQRVFGKAQYKADRYLEDA-KIAQELEDLKRQAQVERQRLR 140 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 556888888899999999999998632 222222222 555666665555444444443
No 306
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=67.00 E-value=42 Score=28.49 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHH
Q 006482 414 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 448 (643)
Q Consensus 414 E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqs 448 (643)
.--.+++++..+++-..+|...|++|.+|..-+++
T Consensus 26 ~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 26 ANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33446666777777788888888888888877665
No 307
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=66.90 E-value=1.3e+02 Score=32.95 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHhhhhhhHHHHHHHHH-HHHHhHHHHHHHHhhhhhhhHHHHhhhHHHH
Q 006482 338 VNQLKSEMEKLQEEIKVQLVELESFRNE-YANVRLECNAADERAKILA-SEVIGLEEKALRLRSNELKLERQLENSQSEI 415 (643)
Q Consensus 338 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE-rdaArle~~aA~ERak~LA-aEVV~LEEk~l~LRS~eLKlerele~l~~E~ 415 (643)
|.+.+..++.++.++..+.+.+++.++. ++.|+.++ +|-..|+ .-+|.-| ++.+.+-.--+.+-.+....
T Consensus 100 la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~----~R~~~L~~~g~vs~~-~~~~a~~a~~~A~A~~~~a~--- 171 (352)
T COG1566 100 LAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNEL----ERRAELAQRGVVSRE-ELDRARAALQAAEAALAAAQ--- 171 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcCcccHH-HHHHHHHHHHHHHHHHHHhH---
Confidence 3344445555555555555555555553 55544333 3455555 3333333 33334444444444443333
Q ss_pred HHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh----hhCCCCC
Q 006482 416 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK----ASGSGKS 459 (643)
Q Consensus 416 ~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRk----a~~~gk~ 459 (643)
...+..+..++.++...+..|..++...+...--|-+ ++..|.+
T Consensus 172 ~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~T~IrAP~dG~V 219 (352)
T COG1566 172 AAQKQNLALLESEVSGAQAQVASAEAALDQAKLDLERTVIRAPVDGYV 219 (352)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhCCEEECCCCceE
Confidence 4455666666667777777777666666555444443 3555554
No 308
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=66.42 E-value=1.5e+02 Score=29.98 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006482 304 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 357 (643)
Q Consensus 304 faLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~ 357 (643)
..|..+...-....+.+|..+..+....|+-...+..+..+|++.+..+..+..
T Consensus 61 gs~~~a~~~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e~~RK~~ke~~~ 114 (234)
T cd07652 61 GSFSNAYHSSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVEKSRKSIKETGK 114 (234)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 456777777777788888888888888877666777777777777666555543
No 309
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.25 E-value=1.9e+02 Score=30.90 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006482 289 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 368 (643)
Q Consensus 289 faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErda 368 (643)
...=+.-|.+++.++-.+|-.|+.=..=++.+-..-..+..++++-...+.+|+.+++.+.+.|..+.-.| .+|.+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l----~~raR 108 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL----KKRAR 108 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 55566788899999999998888888777877777777888888888888888888888877776554433 34555
Q ss_pred Hhh
Q 006482 369 VRL 371 (643)
Q Consensus 369 Arl 371 (643)
|-+
T Consensus 109 Amq 111 (265)
T COG3883 109 AMQ 111 (265)
T ss_pred HHH
Confidence 443
No 310
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=66.10 E-value=1.4e+02 Score=30.66 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006482 341 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 397 (643)
Q Consensus 341 Lk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L 397 (643)
|.-.-+.+++.|..+...+..|.++.+.+|..-.....|=+..-.|+..|+.+-...
T Consensus 110 LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aa 166 (192)
T PF11180_consen 110 LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAA 166 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666666666666666666666666666666666666666555443
No 311
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=65.92 E-value=3.8e+02 Score=34.34 Aligned_cols=85 Identities=20% Similarity=0.202 Sum_probs=53.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006482 283 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 362 (643)
Q Consensus 283 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 362 (643)
.+...+++.+..+...+..|+...+-.++.+-+=.++|-.+-..|...-+...+.+..++..+-.+..+...-+.+.+.+
T Consensus 846 ~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~ 925 (1294)
T KOG0962|consen 846 QKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEEL 925 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHH
Confidence 34455666666777777776666666666666666666666666666666666666666666655555555555556666
Q ss_pred HHHHH
Q 006482 363 RNEYA 367 (643)
Q Consensus 363 ~aErd 367 (643)
++++.
T Consensus 926 k~~~~ 930 (1294)
T KOG0962|consen 926 KNERN 930 (1294)
T ss_pred HHHhh
Confidence 66643
No 312
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=65.81 E-value=3.5e+02 Score=33.89 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=17.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006482 328 TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 366 (643)
Q Consensus 328 t~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 366 (643)
++.||+-...++-+|.+++.|..+++-=.-..+.|..|+
T Consensus 247 ~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~ 285 (1072)
T KOG0979|consen 247 DREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEK 285 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHH
Confidence 344455444444444444444444443333333333333
No 313
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=65.60 E-value=1.7e+02 Score=30.14 Aligned_cols=88 Identities=17% Similarity=0.305 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH------------HHHHHHHhHHHHHHHHhhhhhhh
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK------------ILASEVIGLEEKALRLRSNELKL 404 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak------------~LAaEVV~LEEk~l~LRS~eLKl 404 (643)
.|...++++-++++.+..+...-..+..+|+.++.....=.++|+ .++.++-.||+.+..++...-.+
T Consensus 32 ~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~ 111 (225)
T COG1842 32 AIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQA 111 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666665555555555666555555554444443 23333445666666554444444
Q ss_pred HHHHhhhHHHHHHHHHHhhh
Q 006482 405 ERQLENSQSEISSYKKKISS 424 (643)
Q Consensus 405 erele~l~~E~~s~~~qlss 424 (643)
...++.++..+..++.|+..
T Consensus 112 ~~~~~~l~~~~~~Le~Ki~e 131 (225)
T COG1842 112 EEQVEKLKKQLAALEQKIAE 131 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 314
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=65.58 E-value=1e+02 Score=27.55 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=9.5
Q ss_pred HHHHhhhHHHHHHHHHHhhhH
Q 006482 405 ERQLENSQSEISSYKKKISSL 425 (643)
Q Consensus 405 erele~l~~E~~s~~~qlssl 425 (643)
..++..++.++..+..+|...
T Consensus 87 ~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 87 KAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 315
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=65.49 E-value=1.1e+02 Score=28.07 Aligned_cols=46 Identities=13% Similarity=0.259 Sum_probs=35.0
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006482 324 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 369 (643)
Q Consensus 324 NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaA 369 (643)
.+.+...|+.-......|+...+.++.+++....++..+..++...
T Consensus 24 ~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~ 69 (158)
T PF03938_consen 24 VDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQ 69 (158)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777788888888888888888888887777777766664
No 316
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=65.38 E-value=33 Score=36.33 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=15.8
Q ss_pred HHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 006482 386 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 423 (643)
Q Consensus 386 EVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qls 423 (643)
++..|++++..|+.+-=+..++.+.+..++..|++++.
T Consensus 243 ~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 243 ELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33334444444433333333344444444444444444
No 317
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=65.24 E-value=1.1e+02 Score=32.75 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006482 288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 361 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~ 361 (643)
|=++|...||=|+.+=+.|+-.|...++-.+....|-+.+-+.+-.....+..|+..+.++.+-|+-+++++-.
T Consensus 106 ek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~ 179 (302)
T PF09738_consen 106 EKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVP 179 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCC
Confidence 44555556666666666666666555555555666667777777777777888888888888888777777654
No 318
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=65.18 E-value=34 Score=35.47 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=23.0
Q ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006482 319 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 351 (643)
Q Consensus 319 sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 351 (643)
+|-.+-..+...+.+|...+..|..|++.++..
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455566666677777777777777777777765
No 319
>PF14992 TMCO5: TMCO5 family
Probab=64.91 E-value=1.1e+02 Score=32.77 Aligned_cols=105 Identities=15% Similarity=0.198 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHH-HHh--------
Q 006482 291 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE--EIKVQL-VEL-------- 359 (643)
Q Consensus 291 aLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~--Ei~aQ~-~~l-------- 359 (643)
.|=|-|++--.....|.|.+.+...+++.--++|.-. .|.|.+. .+|.-+-.+|+. ++-++- .++
T Consensus 22 ~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~---~~~e~~l-~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~ 97 (280)
T PF14992_consen 22 SLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIIS---EERETDL-QELELETAKLEKENEHLSKSVQELQRKQDEQE 97 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhh---hchHHHH-HHHHhhhHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 3445666666677788888888888777776666655 4556553 333333333333 222110 000
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh
Q 006482 360 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 399 (643)
Q Consensus 360 e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS 399 (643)
-.+.-|...+.+..+....+-+.+-.+|+.+|.++.+.-+
T Consensus 98 ~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~ 137 (280)
T PF14992_consen 98 TNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVED 137 (280)
T ss_pred CCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0123345555555556666666777777777777666543
No 320
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=64.81 E-value=68 Score=27.89 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 006482 289 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 349 (643)
Q Consensus 289 faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq 349 (643)
+.||++.=++-++-=-+.+.+.+.=+.+-+.-..+|.+|..++|...-.|+.|-+.+++|-
T Consensus 9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677777777777777888888888888889999999999999999999999999999874
No 321
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=64.77 E-value=1e+02 Score=27.45 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=10.8
Q ss_pred HHHHHHhhhHHHhhhhhHHHHHHHH
Q 006482 416 SSYKKKISSLEKERQDFQSTIEALQ 440 (643)
Q Consensus 416 ~s~~~qlsslekeR~~l~s~i~aLQ 440 (643)
..+..++..+..++..+...|..++
T Consensus 84 ~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 84 KKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 322
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=64.64 E-value=71 Score=32.67 Aligned_cols=82 Identities=9% Similarity=0.099 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHhhhh
Q 006482 288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSV-----VNQLKSEMEKLQEEIKVQLVELESF 362 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~-----v~qLk~~mE~Lq~Ei~aQ~~~le~l 362 (643)
....++.||+.+..-|......|.++++-=+....|-..+...+|.+... +.-++..+++.+++ ++.-
T Consensus 101 ~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~K~~~Kl~K~~~~-------~~k~ 173 (240)
T cd07672 101 ARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQEKLFAKLAQSKQN-------AEDA 173 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH-------HHHH
Confidence 45667888999988888888999999999999998888888888765433 33344444444443 3444
Q ss_pred HHHHHHHhhhhhhH
Q 006482 363 RNEYANVRLECNAA 376 (643)
Q Consensus 363 ~aErdaArle~~aA 376 (643)
..+|..+....+..
T Consensus 174 ~~~Y~~~v~~l~~~ 187 (240)
T cd07672 174 DRLYMQNISVLDKI 187 (240)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555554444444
No 323
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=64.38 E-value=1.3e+02 Score=36.93 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=29.8
Q ss_pred HHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 006482 385 SEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 442 (643)
Q Consensus 385 aEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEE 442 (643)
.||+.|+++...+ ..+...-.+.+.+.-.+.--+++++-.++.+++.+++.
T Consensus 363 ~e~~~l~~~~d~~-------~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~ 413 (913)
T KOG0244|consen 363 FENVTLEETLDAL-------LQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNL 413 (913)
T ss_pred hhhhhhhhhHHHH-------hcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHH
Confidence 5566666555433 33333444445555556666777777777777766643
No 324
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=64.31 E-value=40 Score=38.31 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006482 411 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 450 (643)
Q Consensus 411 l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskL 450 (643)
+..++..+++.+.-+.+.+++++..|+.|++|.+.|+.++
T Consensus 81 LEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 81 MQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555777888999999999999999988
No 325
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=64.01 E-value=2e+02 Score=34.54 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=17.5
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHH
Q 006482 318 ESLAAENSSLTDSYNQQRSVVNQLKS 343 (643)
Q Consensus 318 esLa~ENsaLt~~yNqQ~~~v~qLk~ 343 (643)
|+|+=..+-||++.-+|+..|..|.-
T Consensus 121 esL~LQvsvLteqVeaQgEKIrDLE~ 146 (861)
T KOG1899|consen 121 ESLQLQVSVLTEQVEAQGEKIRDLET 146 (861)
T ss_pred hhheehHHHHHHHHHHhhhhHHHHHH
Confidence 45555566778888888877766543
No 326
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=63.53 E-value=2.6e+02 Score=31.58 Aligned_cols=45 Identities=31% Similarity=0.398 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHH---HHHHhhh
Q 006482 536 INALISELALEKEELVQALSSELAQSSKLKDLNNELSR---KLEHQTQ 580 (643)
Q Consensus 536 InaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsr---KLE~qTQ 580 (643)
+..||.|+..||+-|+.-|-.+..+-.-||+++--|.. -||+--|
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQ 290 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQ 290 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 46789999999999999999999999999999876653 3444443
No 327
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=62.95 E-value=3.7e+02 Score=33.21 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=14.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006482 330 SYNQQRSVVNQLKSEMEKLQEEIKVQL 356 (643)
Q Consensus 330 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~ 356 (643)
++-+-.-.|.+||+.+.-+|+-+.+|.
T Consensus 384 r~e~~E~EvD~lksQLADYQQALD~QQ 410 (1480)
T COG3096 384 RAEAAELEVDELKSQLADYQQALDVQQ 410 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344444455555555555555555543
No 328
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=62.89 E-value=38 Score=33.54 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=12.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 006482 428 ERQDFQSTIEALQEEKKMMQSKLR 451 (643)
Q Consensus 428 eR~~l~s~i~aLQEEKklLqskLR 451 (643)
+|..+...++.|++|.+.|+..|-
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555554
No 329
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=62.74 E-value=1.6e+02 Score=29.01 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006482 433 QSTIEALQEEKKMMQSK 449 (643)
Q Consensus 433 ~s~i~aLQEEKklLqsk 449 (643)
+.-|+.+.|.-..|.-+
T Consensus 120 ~a~id~~~er~~~l~r~ 136 (158)
T PF09486_consen 120 DARIDVCRERIDRLRRA 136 (158)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 34444444444444333
No 330
>PF15294 Leu_zip: Leucine zipper
Probab=62.60 E-value=2.2e+02 Score=30.53 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHH
Q 006482 289 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM--EKLQEEIKVQLVELESFRNEY 366 (643)
Q Consensus 289 faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~m--E~Lq~Ei~aQ~~~le~l~aEr 366 (643)
-+.|..-|++|..|=-.|.--|..-...+-..++|+..|...-|......+..+... ---.+++..=...++.++.|+
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ 206 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSEL 206 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHH
Confidence 477889999999999999999999999999999999999998888777544444310 000011111111233444444
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHH
Q 006482 367 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 446 (643)
Q Consensus 367 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklL 446 (643)
..+. .-+.+.--.|++.+.--+.+-|+.+.+|.....|. +++++.- +-=..|...+..-.++-|.|
T Consensus 207 ek~~----------~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeL---ekKfqqT-~ay~NMk~~ltkKn~QiKeL 272 (278)
T PF15294_consen 207 EKAL----------QDKESQQKALEETLQSCKHELLRVQEQLSLAEKEL---EKKFQQT-AAYRNMKEILTKKNEQIKEL 272 (278)
T ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhH---HHHhCcc-HHHHHhHHHHHhccHHHHHH
Confidence 4432 22222334566666667888888888876666553 3444431 11233555555555777777
Q ss_pred HHHHHh
Q 006482 447 QSKLRK 452 (643)
Q Consensus 447 qskLRk 452 (643)
..||++
T Consensus 273 Rkrl~k 278 (278)
T PF15294_consen 273 RKRLAK 278 (278)
T ss_pred HHHhcC
Confidence 777653
No 331
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=62.57 E-value=1.2e+02 Score=27.31 Aligned_cols=50 Identities=10% Similarity=0.154 Sum_probs=32.4
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHhhhhh
Q 006482 325 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF---RNEYANVRLECN 374 (643)
Q Consensus 325 saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l---~aErdaArle~~ 374 (643)
..+...|++....+..+...+.+|+.++.-...+++.| ..++.-+++=+.
T Consensus 6 q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~ 58 (110)
T TIGR02338 6 QNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGN 58 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhch
Confidence 34667788888888888888877777766666665555 334444444444
No 332
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.17 E-value=3.8e+02 Score=33.06 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=13.0
Q ss_pred HhHHHHHhhHHHHHHHHHhhhHHH
Q 006482 560 QSSKLKDLNNELSRKLEHQTQRLE 583 (643)
Q Consensus 560 ~~s~Lk~lN~ELsrKLE~qTQRLE 583 (643)
+...++.++.||.=-|+.|.+..+
T Consensus 905 ki~s~kqeqee~~v~~~~~~~~i~ 928 (970)
T KOG0946|consen 905 KIVSNKQEQEELLVLLADQKEKIQ 928 (970)
T ss_pred cccchhhhHHHHHHHHhhHHHHHH
Confidence 344555555665555555555443
No 333
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=62.07 E-value=2.7e+02 Score=31.33 Aligned_cols=22 Identities=23% Similarity=0.361 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006482 538 ALISELALEKEELVQALSSELA 559 (643)
Q Consensus 538 aLisEla~Ere~l~~aL~~es~ 559 (643)
.-+++--.+|...+..|..|..
T Consensus 395 ~~lt~~Li~KQ~~lE~l~~ek~ 416 (511)
T PF09787_consen 395 TQLTESLIQKQTQLESLGSEKN 416 (511)
T ss_pred hhccHHHHHHHHHHHHHHhhhh
Confidence 3345555577777776666544
No 334
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=62.03 E-value=2.4e+02 Score=30.62 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006482 339 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 397 (643)
Q Consensus 339 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L 397 (643)
.+++.....+.++|+...-....++.+.--+-.++..-..+|..+-.++|.+=.++-.+
T Consensus 168 ~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~ 226 (294)
T COG1340 168 DELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDEL 226 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344444444444433333344444444444555556666777777777766666555
No 335
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=61.98 E-value=2e+02 Score=29.68 Aligned_cols=91 Identities=19% Similarity=0.267 Sum_probs=54.3
Q ss_pred chhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006482 285 HNEDFAALEQHIEDLTQ-------EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 357 (643)
Q Consensus 285 ~~~~faaLqqhIeDLT~-------EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~ 357 (643)
+.-+++-|.|-+.|.-. |=++|--.|-..+.-.+..-.....|.+.++.....+...+.++.+...|+.-.+-
T Consensus 8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLre 87 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLRE 87 (202)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhh
Confidence 45678888887777543 33455555555555566666666666677777776766666666666666555544
Q ss_pred HhhhhHHHHHHHhhhhhh
Q 006482 358 ELESFRNEYANVRLECNA 375 (643)
Q Consensus 358 ~le~l~aErdaArle~~a 375 (643)
.+..+..|....+.....
T Consensus 88 kl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 88 KLGQLEAELAELREELAC 105 (202)
T ss_pred hhhhhHHHHHHHHHHHHh
Confidence 555555454444443333
No 336
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=61.69 E-value=1.2e+02 Score=27.10 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006482 307 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 351 (643)
Q Consensus 307 qR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 351 (643)
+-.|+.+..-..-|..-|.+..-+|..-+..++.|...+++|.+.
T Consensus 13 ~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k 57 (99)
T PF10046_consen 13 ESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQK 57 (99)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777778888999999999999999999999998888764
No 337
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=61.67 E-value=1.5e+02 Score=28.33 Aligned_cols=128 Identities=17% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006482 318 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 397 (643)
Q Consensus 318 esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L 397 (643)
++|--||..+..+.-+....+..|+...-.-=+.+.-..-.+..+..|....+.+.....+.-..+-.++..+..+...+
T Consensus 45 eqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~ 124 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKL 124 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhHHHHhh-----hHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482 398 RSNELKLERQLEN-----SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 452 (643)
Q Consensus 398 RS~eLKlerele~-----l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRk 452 (643)
|-.--+++.+... +-.+...+...+.. ++..|..|+..-+.|..+|.+
T Consensus 125 ~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~-------l~~~i~~l~rk~~~l~~~i~~ 177 (177)
T PF13870_consen 125 RKQNKKLRQQGGLLGVPALLRDYDKTKEEVEE-------LRKEIKELERKVEILEMRIKQ 177 (177)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhcC
No 338
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=61.65 E-value=43 Score=31.36 Aligned_cols=64 Identities=23% Similarity=0.413 Sum_probs=43.8
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482 383 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 383 LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
..+|++.|..+++++-+..|-++-.-+.....+......+..++++|+. |++|-..|+.+.+..
T Consensus 26 ~EaE~FELk~~vL~lE~rvleLel~~~~~~~~~~~~~~~~~~~~~~~~~-------l~~e~~~l~~~~~a~ 89 (108)
T PF14739_consen 26 HEAEKFELKNEVLRLENRVLELELHGDKAAPQIADLRHRLAEAQEDRQE-------LQEEYVSLKKNYQAL 89 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4678999999999887766665555555556666666666666666666 556666666665554
No 339
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=61.63 E-value=1.8e+02 Score=33.03 Aligned_cols=75 Identities=23% Similarity=0.187 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhh-hhhHHHHHHHHHHHHHHHHH
Q 006482 375 AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER-QDFQSTIEALQEEKKMMQSK 449 (643)
Q Consensus 375 aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR-~~l~s~i~aLQEEKklLqsk 449 (643)
.-++++..=-.||-+|||++-+|--+.+|+-++-..+..+--++++.-.+.--++ ..+-..|-.|+|...-|+++
T Consensus 163 ~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~Lktq 238 (446)
T KOG4438|consen 163 RFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQ 238 (446)
T ss_pred hhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455788899999999988899988888888777776666555532223 33445566777766655553
No 340
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=61.62 E-value=2e+02 Score=29.63 Aligned_cols=99 Identities=24% Similarity=0.354 Sum_probs=57.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH--------
Q 006482 326 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL-------- 397 (643)
Q Consensus 326 aLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L-------- 397 (643)
+|--..+...+.+......+..|+.-+...-++++....|..+...++.--.+..-.|-.|+..|-+.+-..
T Consensus 35 ~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~ 114 (202)
T PF06818_consen 35 SLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQ 114 (202)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhc
Confidence 344445555555555555566666666666667777777777766666555566666666666665555554
Q ss_pred ---hhhhhhhHHH-----HhhhHHHHHHHHHHhhh
Q 006482 398 ---RSNELKLERQ-----LENSQSEISSYKKKISS 424 (643)
Q Consensus 398 ---RS~eLKlere-----le~l~~E~~s~~~qlss 424 (643)
-+++.|+++. +.+++.+++++++.|..
T Consensus 115 ~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~ 149 (202)
T PF06818_consen 115 LLSESDEAKAQRQAGEDELGSLRREVERLRAELQR 149 (202)
T ss_pred cccccchhHHhhccccccchhHHHHHHHHHHHHHH
Confidence 3444444443 34456666666665553
No 341
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=61.58 E-value=1.5e+02 Score=28.04 Aligned_cols=94 Identities=24% Similarity=0.319 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006482 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 366 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 366 (643)
.-+..|+..|.-+.-|.-+|+..+++-.+-=+.|++|--.||..-.+. .....++..|+.+ ++.+...|
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~e-------l~~l~~ry 84 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQE-------LEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-------HHHHHHHH
Confidence 346777888888888888888888887777777877777777655333 2222233333332 34555567
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHH
Q 006482 367 ANVRLECNAADERAKILASEVIGLE 391 (643)
Q Consensus 367 daArle~~aA~ERak~LAaEVV~LE 391 (643)
+++-.=+.+=.|+..-|=+.|..|-
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHH
Confidence 7777667776666655555555443
No 342
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=61.45 E-value=2.2e+02 Score=30.14 Aligned_cols=92 Identities=20% Similarity=0.300 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH-------HHHHHhHHHHHHHHhhhhhhhHHHHhhh
Q 006482 339 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLERQLENS 411 (643)
Q Consensus 339 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L-------AaEVV~LEEk~l~LRS~eLKlerele~l 411 (643)
....+-+++.|.--..++-.++..+..|..|-.+...|..|.+.. ..++--|.+|+.+.+.+.-|.++
T Consensus 115 k~~e~~f~KaQKpw~k~~kkv~~aKk~Y~~aCk~e~~A~~~~~~~~~d~~~~~~q~~K~~~k~~k~~~~~~k~~~----- 189 (258)
T cd07679 115 KEAEDGFRKAQKPWAKKLKEVEAAKKAYHTACKEEKLATSREANSKADPALNPEQLKKLQDKVEKCKQDVLKTKE----- 189 (258)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 456677888888888888899999999999888888888877532 24555666666655555554444
Q ss_pred HHHHHHHHHHhhhHHHhhh----hhHHHHHHHH
Q 006482 412 QSEISSYKKKISSLEKERQ----DFQSTIEALQ 440 (643)
Q Consensus 412 ~~E~~s~~~qlsslekeR~----~l~s~i~aLQ 440 (643)
.|+..|..|.+-|. ++.++.+.+|
T Consensus 190 -----~Y~~~l~~L~~~~~~y~e~m~~~fe~~Q 217 (258)
T cd07679 190 -----KYEKSLKELDQTTPQYMENMEQVFEQCQ 217 (258)
T ss_pred -----HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45555555555543 5888999999
No 343
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=61.18 E-value=55 Score=35.02 Aligned_cols=86 Identities=23% Similarity=0.407 Sum_probs=56.8
Q ss_pred hhhH-HHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHh--------------hhHHHHHHHHHHhhh
Q 006482 360 ESFR-NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE--------------NSQSEISSYKKKISS 424 (643)
Q Consensus 360 e~l~-aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele--------------~l~~E~~s~~~qlss 424 (643)
.+++ .|-++| .|-+||...-.=|+.+|.+|..|--++.-|-+-|+ .++.|+..|+.++.-
T Consensus 196 ~sfK~sEeeNa-----r~V~kAnsVldRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~k 270 (311)
T PF04642_consen 196 ESFKRSEEENA-----RAVEKANSVLDRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKK 270 (311)
T ss_pred HHHhhhhhhhH-----HHHHHHHHHHHHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 4444 566663 45666666666777777777777666665555542 377888888888888
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482 425 LEKERQDFQSTIEALQEEKKMMQSKLRK 452 (643)
Q Consensus 425 lekeR~~l~s~i~aLQEEKklLqskLRk 452 (643)
++.+-+.| +..|-+||++....++-.
T Consensus 271 meE~Qa~~--l~~aR~~errkvraqf~d 296 (311)
T PF04642_consen 271 MEEEQAEM--LRAARTEERRKVRAQFHD 296 (311)
T ss_pred ccHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 87777664 344667888766555443
No 344
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=60.97 E-value=48 Score=32.06 Aligned_cols=80 Identities=26% Similarity=0.280 Sum_probs=41.2
Q ss_pred hHHHHHHHhhhh----hhHHHHHHHHHHHHHhHHHHHHHHhhhhhhh--------HHHHhhhHHHHHHHHHHhhhHHHhh
Q 006482 362 FRNEYANVRLEC----NAADERAKILASEVIGLEEKALRLRSNELKL--------ERQLENSQSEISSYKKKISSLEKER 429 (643)
Q Consensus 362 l~aErdaArle~----~aA~ERak~LAaEVV~LEEk~l~LRS~eLKl--------erele~l~~E~~s~~~qlsslekeR 429 (643)
+++||..+...+ -=..-|.-.+-.+.+.+|+++...+.+.-.. +.+......|++.+++++...++|.
T Consensus 98 fraQRN~YIsGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~ 177 (192)
T PF05529_consen 98 FRAQRNMYISGFALFLSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEI 177 (192)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344444444332 2355667777777777777776655443211 1222345556666666666554444
Q ss_pred hhhHHHHHHHHH
Q 006482 430 QDFQSTIEALQE 441 (643)
Q Consensus 430 ~~l~s~i~aLQE 441 (643)
..|+.-.+.|++
T Consensus 178 ~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 178 EALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 345
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=60.93 E-value=60 Score=34.54 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHH
Q 006482 347 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 426 (643)
Q Consensus 347 ~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssle 426 (643)
-|-.|-++|+-+|.+ |-|||..-.--.+|.-.+--||+.|+|+-.+|+-..=.|++.-++|.
T Consensus 63 HLS~EEK~~RrKLKN----RVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~-------------- 124 (292)
T KOG4005|consen 63 HLSWEEKVQRRKLKN----RVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLL-------------- 124 (292)
T ss_pred ccCHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 344566777766654 55666666667778888999999999988777655554454444444
Q ss_pred HhhhhhHHHHHHHHHHHHHH
Q 006482 427 KERQDFQSTIEALQEEKKMM 446 (643)
Q Consensus 427 keR~~l~s~i~aLQEEKklL 446 (643)
.+-++|.+.++-+.+|-+-|
T Consensus 125 ~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 125 AKNHELDSELELLRQELAEL 144 (292)
T ss_pred hhhHHHHHHHHHHHHHHHhh
Confidence 44444555555555554444
No 346
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=60.89 E-value=1.4e+02 Score=27.53 Aligned_cols=94 Identities=16% Similarity=0.125 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh----------H---HHHHHHHHHHHHHHHHHHHHH
Q 006482 291 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR----------S---VVNQLKSEMEKLQEEIKVQLV 357 (643)
Q Consensus 291 aLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~----------~---~v~qLk~~mE~Lq~Ei~aQ~~ 357 (643)
+|+.+++=-.++.-.....|++++.-.+.....-..|.+..++-. - .+.....=+.+|...|..|.-
T Consensus 6 rL~~vl~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~ 85 (147)
T PRK05689 6 ALATLLDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQ 85 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666655555555555533332221 1 222334448888888888888
Q ss_pred HhhhhHHHHHHHhhhhhhHHHHHHHHH
Q 006482 358 ELESFRNEYANVRLECNAADERAKILA 384 (643)
Q Consensus 358 ~le~l~aErdaArle~~aA~ERak~LA 384 (643)
.++.+..+.+.++....+|.-+.|+|-
T Consensus 86 ~v~~~~~~ve~~r~~~~~a~~~~k~lE 112 (147)
T PRK05689 86 QLTQWTQKVDNARKYWQEKKQRLEALE 112 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998888888877777654
No 347
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=60.83 E-value=54 Score=31.68 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH
Q 006482 339 NQLKSEMEKLQEEIKVQLVELESFR 363 (643)
Q Consensus 339 ~qLk~~mE~Lq~Ei~aQ~~~le~l~ 363 (643)
..++.++++|+.|++....++++++
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~Lk 181 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALK 181 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333333
No 348
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.80 E-value=3.7e+02 Score=32.42 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=53.8
Q ss_pred HHHHHHhhhHHHHHHHHh---hHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhH
Q 006482 317 SESLAAENSSLTDSYNQQ---RSVVNQLKSEMEKLQE---EIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 390 (643)
Q Consensus 317 ~esLa~ENsaLt~~yNqQ---~~~v~qLk~~mE~Lq~---Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~L 390 (643)
+-+.++-|.++-..|+.- .....++++++|+|.. .+....+++++..+|-.+ ..+--..|.-.+-.+++.|
T Consensus 404 ~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~---~i~~~k~~~e~le~~~kdL 480 (716)
T KOG4593|consen 404 LTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYR---EITGQKKRLEKLEHELKDL 480 (716)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 333444455554444432 3334444444544443 444444555555444433 2333445666777888888
Q ss_pred HHHHHHHhhhhhhhHHHHhh-hHHHHHHHHHHhhh
Q 006482 391 EEKALRLRSNELKLERQLEN-SQSEISSYKKKISS 424 (643)
Q Consensus 391 EEk~l~LRS~eLKlerele~-l~~E~~s~~~qlss 424 (643)
...+.+ +.++|..+++..+ +...+..|.+++..
T Consensus 481 ~s~L~~-~~q~l~~qr~e~~~~~e~i~~~~ke~~~ 514 (716)
T KOG4593|consen 481 QSQLSS-REQSLLFQREESELLREKIEQYLKELEL 514 (716)
T ss_pred HHHHHH-HHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 887774 4555555554433 45555556555553
No 349
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=60.51 E-value=1.9e+02 Score=29.13 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006482 305 ALQRSLEASRALSESLAAENSSLTDSYNQ 333 (643)
Q Consensus 305 aLqR~L~~s~~l~esLa~ENsaLt~~yNq 333 (643)
.|..++..-...++.+|..+..|..+-+.
T Consensus 57 t~~~~w~~i~~~~e~~a~~H~~l~~~L~~ 85 (261)
T cd07648 57 TFAPLWLVLRVSTEKLSELHLQLVQKLQE 85 (261)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666677777777777777666643
No 350
>PRK10698 phage shock protein PspA; Provisional
Probab=60.32 E-value=2e+02 Score=29.20 Aligned_cols=51 Identities=12% Similarity=0.277 Sum_probs=25.3
Q ss_pred HhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 006482 408 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGK 458 (643)
Q Consensus 408 le~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~~gk 458 (643)
+..+..++...+..+..|...-..|+.-|..++..+..|..|.+.+-+.-+
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~ 151 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRD 151 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444555555556666666666655544333
No 351
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.17 E-value=3.9e+02 Score=32.50 Aligned_cols=165 Identities=7% Similarity=0.047 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-
Q 006482 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESL-AAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN- 364 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esL-a~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a- 364 (643)
+.|..+.+.+.+-..+--.=...|+......+-+ ..+..+|....++....+.++...+..++...+.....-+....
T Consensus 176 ~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (1042)
T TIGR00618 176 DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQ 255 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred -----HHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHH
Q 006482 365 -----EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 439 (643)
Q Consensus 365 -----ErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aL 439 (643)
++..++.+..++..+...++..--.++.+..-. .......++..+..++..+..++....+.-......+.++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1042)
T TIGR00618 256 LKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAA--PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAH 333 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhh
Q 006482 440 QEEKKMMQSKLRKA 453 (643)
Q Consensus 440 QEEKklLqskLRka 453 (643)
+.++..++.+|...
T Consensus 334 ~~~~~~~~~~~~~~ 347 (1042)
T TIGR00618 334 VKQQSSIEEQRRLL 347 (1042)
T ss_pred HHHHHHHHHHHHHH
No 352
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=60.12 E-value=2.1e+02 Score=29.33 Aligned_cols=90 Identities=13% Similarity=0.154 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006482 289 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 368 (643)
Q Consensus 289 faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErda 368 (643)
-..++.+++.+-..+..+...|.++++-=+....+-+++...+|.-.+..+--++++++++..+..-...+...+.+|..
T Consensus 114 ~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~ 193 (258)
T cd07655 114 TKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEK 193 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666667788888888888888888888877544322222466777777766666677777888888
Q ss_pred HhhhhhhHHH
Q 006482 369 VRLECNAADE 378 (643)
Q Consensus 369 Arle~~aA~E 378 (643)
+....+.-..
T Consensus 194 ~l~~~n~~~~ 203 (258)
T cd07655 194 ALEDLNKYNP 203 (258)
T ss_pred HHHHHHhhhH
Confidence 7665555443
No 353
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=59.91 E-value=1.5e+02 Score=27.49 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=28.8
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 006482 383 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 440 (643)
Q Consensus 383 LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ 440 (643)
.-.=+..|.+.+.+. +..+..+..+++.++..+-.+.++|..+..+++.-.
T Consensus 69 ~~~fl~~L~~~i~~q-------~~~v~~~~~~ve~~r~~~~ea~~~~k~~ekLker~~ 119 (146)
T PRK07720 69 YQQFVTNLERTIDHY-------QLLVMQAREQMNRKQQDLTEKNIEVKKYEKMKEKKQ 119 (146)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666544 344445555566666666666666666666655444
No 354
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=59.86 E-value=3.4e+02 Score=31.70 Aligned_cols=151 Identities=19% Similarity=0.280 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHHhh------
Q 006482 296 IEDLTQEKFALQRSLEASRA-LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE--------EIKVQLVELE------ 360 (643)
Q Consensus 296 IeDLT~EKfaLqR~L~~s~~-l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~--------Ei~aQ~~~le------ 360 (643)
|.+||+|.+ ++|..+++ ...+...|-..+-++|+---..|.+|+.-+++.+. |++++.+...
T Consensus 234 lq~l~Ee~l---~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~ 310 (531)
T PF15450_consen 234 LQELTEERL---RALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKA 310 (531)
T ss_pred HHHHHHHHH---HHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhH
Confidence 445666655 34444555 45555666677777777766666666666655433 2233222111
Q ss_pred ------------hh-----------HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHH
Q 006482 361 ------------SF-----------RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 417 (643)
Q Consensus 361 ------------~l-----------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s 417 (643)
++ ..+.+..|--.+...+....|+..|--|+++|..|. ..|.++.+ .+...+..
T Consensus 311 eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs-~rld~qEq--tL~~rL~e 387 (531)
T PF15450_consen 311 EELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALS-WRLDLQEQ--TLNLRLSE 387 (531)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHH--HHHHHHHH
Confidence 11 223333332334445555677788888888888774 44655555 45555666
Q ss_pred HHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482 418 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 455 (643)
Q Consensus 418 ~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~ 455 (643)
.+....+.+ |-.| --|.++|+|-..-+..||....
T Consensus 388 ~~~e~~~~~--r~~l-ekl~~~q~e~~~~l~~v~eKVd 422 (531)
T PF15450_consen 388 AKNEWESDE--RKSL-EKLDQWQNEMEKHLKEVQEKVD 422 (531)
T ss_pred HHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 666555443 3333 3567888887665555665443
No 355
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=59.51 E-value=2.3e+02 Score=29.75 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=17.6
Q ss_pred HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhh
Q 006482 358 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 399 (643)
Q Consensus 358 ~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS 399 (643)
.+..+..++..++.+..++..+..-=.-+|+.|++++-.++-
T Consensus 215 ~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~ 256 (362)
T TIGR01010 215 LISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRK 256 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH
Confidence 344444444444444443332222223344445544444433
No 356
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=59.42 E-value=9 Score=35.04 Aligned_cols=81 Identities=22% Similarity=0.481 Sum_probs=18.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhh
Q 006482 332 NQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS 411 (643)
Q Consensus 332 NqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l 411 (643)
|.+..-+..|..++..+.+.+...+..+ +..+|+.- -.|+...+++++++.++|..-..++++++..
T Consensus 22 ~~~~~~Le~L~~dL~~~~~~L~~~Li~l--IN~dY~dF-----------v~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~ 88 (133)
T PF06148_consen 22 NRRYVSLEDLRKDLRSYSKELKNELIEL--INDDYADF-----------VSLSTNLVGMDEKIEELRKPLSQFREEVESV 88 (133)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHH-----------HHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888888888877776654 45556542 3478889999999988877777777777776
Q ss_pred HHHHHHHHHHhhhH
Q 006482 412 QSEISSYKKKISSL 425 (643)
Q Consensus 412 ~~E~~s~~~qlssl 425 (643)
+.++......+...
T Consensus 89 ~~~l~~~~~~i~~~ 102 (133)
T PF06148_consen 89 RDELDNTQEEIEDK 102 (133)
T ss_dssp HHS-STTHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66665555555543
No 357
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=58.85 E-value=1.9e+02 Score=28.52 Aligned_cols=94 Identities=21% Similarity=0.324 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhh-hHHHHHHHHHHhhhHHHhhhhhHHHHHH
Q 006482 360 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN-SQSEISSYKKKISSLEKERQDFQSTIEA 438 (643)
Q Consensus 360 e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~-l~~E~~s~~~qlsslekeR~~l~s~i~a 438 (643)
++.+.|+...+.+...-.........||=.||.+.++.|..-...-+.... -..+|+..=.++..+..+-+-++.--..
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~q 102 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQ 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhh
Q 006482 439 LQEEKKMMQSKLRKA 453 (643)
Q Consensus 439 LQEEKklLqskLRka 453 (643)
|+..+..|.-+|++.
T Consensus 103 Lr~rRD~LErrl~~l 117 (159)
T PF05384_consen 103 LRERRDELERRLRNL 117 (159)
T ss_pred HHHHHHHHHHHHHHH
No 358
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=58.78 E-value=3e+02 Score=33.67 Aligned_cols=137 Identities=22% Similarity=0.252 Sum_probs=82.0
Q ss_pred HHHHHHhhhHHHHHH---HHhhH----------------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHH
Q 006482 317 SESLAAENSSLTDSY---NQQRS----------------VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD 377 (643)
Q Consensus 317 ~esLa~ENsaLt~~y---NqQ~~----------------~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ 377 (643)
++-|-.||.-|.|+. |||-- ++-.|++.--.||.+++..+-.++.+..--+-...-+.--.
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence 477777777777663 55422 24455555556666666665555555422222222222222
Q ss_pred HHHHHHHHHHHhHHHHHHH----HhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHH-------HHHHHHHHHH
Q 006482 378 ERAKILASEVIGLEEKALR----LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTI-------EALQEEKKMM 446 (643)
Q Consensus 378 ERak~LAaEVV~LEEk~l~----LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i-------~aLQEEKklL 446 (643)
+--|.|..+.-.=+..+++ +-.+.-|++-|++++..++..|+=++++++||-+-|--+| ++|+|=-|-|
T Consensus 469 ~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~L 548 (861)
T PF15254_consen 469 EENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTL 548 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 2233344333333333332 3345667778899999999999999999999998887654 5666666777
Q ss_pred HHHHHhh
Q 006482 447 QSKLRKA 453 (643)
Q Consensus 447 qskLRka 453 (643)
|.-.++.
T Consensus 549 Q~Sma~l 555 (861)
T PF15254_consen 549 QNSMAKL 555 (861)
T ss_pred HHHHHHH
Confidence 7666655
No 359
>PRK12704 phosphodiesterase; Provisional
Probab=58.76 E-value=3.3e+02 Score=31.16 Aligned_cols=12 Identities=8% Similarity=0.498 Sum_probs=6.3
Q ss_pred HHHHHHHHHhhh
Q 006482 443 KKMMQSKLRKAS 454 (643)
Q Consensus 443 KklLqskLRka~ 454 (643)
|+.+-..+.+.+
T Consensus 191 ~~i~~~a~qr~a 202 (520)
T PRK12704 191 KEILAQAIQRCA 202 (520)
T ss_pred HHHHHHHHHhhc
Confidence 445555555554
No 360
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=58.68 E-value=2.5e+02 Score=29.91 Aligned_cols=106 Identities=19% Similarity=0.262 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 416 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~ 416 (643)
.|..+...--.|+.++..|.-..+.|..=...+---+.--..=-..++.-+-.||-....+|+-.=+.-+-|..+..|..
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55555555555666666665555444321111111111111111124444455555555566555566666666666666
Q ss_pred HHHHHhhhHHHhhhhhHHHHHHHHHH
Q 006482 417 SYKKKISSLEKERQDFQSTIEALQEE 442 (643)
Q Consensus 417 s~~~qlsslekeR~~l~s~i~aLQEE 442 (643)
...+++..+.+.-..|+.+..+||.|
T Consensus 283 ~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 283 KLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 66666666666666777777777765
No 361
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=58.44 E-value=2.1e+02 Score=29.38 Aligned_cols=9 Identities=22% Similarity=0.435 Sum_probs=3.3
Q ss_pred HHHhhhHHH
Q 006482 406 RQLENSQSE 414 (643)
Q Consensus 406 rele~l~~E 414 (643)
.+++.++.+
T Consensus 196 ~~l~~l~~~ 204 (301)
T PF14362_consen 196 AELDTLQAQ 204 (301)
T ss_pred HHHHHHHHh
Confidence 333333333
No 362
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=58.33 E-value=2.1e+02 Score=28.92 Aligned_cols=71 Identities=23% Similarity=0.286 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH
Q 006482 311 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE---EIKVQLVELESFRNEYANVRLECNAADERAK 381 (643)
Q Consensus 311 ~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~---Ei~aQ~~~le~l~aErdaArle~~aA~ERak 381 (643)
.+-++++..-+...+.|-+.+.+.......|+.++..|.. .-..|...+..+..|.++++.+-.+..-+++
T Consensus 36 ~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~ 109 (206)
T PF14988_consen 36 RERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAE 109 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666666666666666666667766655443 3345677888888888887666665555543
No 363
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=57.85 E-value=39 Score=28.50 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 006482 432 FQSTIEALQEEKKMMQSKLRKAS 454 (643)
Q Consensus 432 l~s~i~aLQEEKklLqskLRka~ 454 (643)
.+..|+.|+.+-++|..||+.+.
T Consensus 30 Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 30 QQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567788999999999999986
No 364
>KOG3096 consensus Spliceosome-associated coiled-coil protein [Function unknown]
Probab=57.76 E-value=2.5e+02 Score=29.47 Aligned_cols=109 Identities=20% Similarity=0.218 Sum_probs=78.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006482 284 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLA--AENSSLTDSYNQ--QRSVVNQLKSEMEKLQEEIKVQLVEL 359 (643)
Q Consensus 284 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa--~ENsaLt~~yNq--Q~~~v~qLk~~mE~Lq~Ei~aQ~~~l 359 (643)
.+.-|.+|-++.|. .+++.-|... -+|=.|+++|-. =..-...|..-++.+|.|++-+.-..
T Consensus 89 gkr~d~~aW~e~l~--------------ns~aqlEhq~~r~~NLeLM~k~g~eaw~~~ne~le~~l~~aqkelq~~kk~i 154 (225)
T KOG3096|consen 89 GKRNDDAAWQESLL--------------NSMAQLEHQLVRNENLELMSKHGEEAWKQYNEVLEVMLTHAQKELQKTKKLI 154 (225)
T ss_pred CccchHHHHHHHHH--------------HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677766553 3333333322 355566666532 23444567778889999999999999
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHh
Q 006482 360 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 409 (643)
Q Consensus 360 e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele 409 (643)
..+..+|-.||+. |-+|-+.|..+-|.|=-+-.+.++.++-+++++.
T Consensus 155 q~vn~~RK~~Q~~---ag~rL~~le~~wvqLv~knyeie~a~~~le~~i~ 201 (225)
T KOG3096|consen 155 QDVNRQRKHAQLT---AGERLRELEQKWVQLVSKNYEIEVACVQLETQID 201 (225)
T ss_pred HHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999976 5689999999999998888888888888777754
No 365
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=57.70 E-value=70 Score=36.45 Aligned_cols=17 Identities=47% Similarity=0.679 Sum_probs=8.2
Q ss_pred HHHhhhhhHHHHHHHHH
Q 006482 425 LEKERQDFQSTIEALQE 441 (643)
Q Consensus 425 lekeR~~l~s~i~aLQE 441 (643)
|..+|+.++..|..||.
T Consensus 121 l~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 121 LKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445555555544
No 366
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=57.60 E-value=1.7e+02 Score=31.82 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=46.8
Q ss_pred HHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHH
Q 006482 384 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 447 (643)
Q Consensus 384 AaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLq 447 (643)
+-+|-.+-.++-...|+|--|...++.-+.|.+++++.++.|..-|--.-...+.+.||-+.|.
T Consensus 118 ~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly 181 (338)
T KOG3647|consen 118 QVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLY 181 (338)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3444555566666777888888888888888899999999888888766677777777764443
No 367
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=57.59 E-value=1.8e+02 Score=27.72 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=22.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482 425 LEKERQDFQSTIEALQEEKKMMQSKLRKASG 455 (643)
Q Consensus 425 lekeR~~l~s~i~aLQEEKklLqskLRka~~ 455 (643)
+.+|--+|.-++--+.+-.+.+..||+....
T Consensus 82 ~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~ 112 (136)
T PF04871_consen 82 AQSELDDLLVLLGDLEEKRKKYKERLKELGE 112 (136)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHcCC
Confidence 4556677777777777777788888877543
No 368
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=57.43 E-value=60 Score=28.90 Aligned_cols=44 Identities=27% Similarity=0.460 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhH
Q 006482 538 ALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQR 581 (643)
Q Consensus 538 aLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQR 581 (643)
.=|..|...|.+|-+.|-....+|.+|+..|+|+++||...-..
T Consensus 39 ~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~ 82 (89)
T PF13747_consen 39 EEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIET 82 (89)
T ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677899999999999999999999999999999865443
No 369
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=57.29 E-value=1e+02 Score=32.29 Aligned_cols=8 Identities=25% Similarity=0.231 Sum_probs=4.0
Q ss_pred hhhCCCCC
Q 006482 452 KASGSGKS 459 (643)
Q Consensus 452 ka~~~gk~ 459 (643)
+|+-.|..
T Consensus 187 ~AP~dG~V 194 (370)
T PRK11578 187 VAPMAGEV 194 (370)
T ss_pred ECCCCcEE
Confidence 34555554
No 370
>PRK14154 heat shock protein GrpE; Provisional
Probab=57.09 E-value=2.1e+02 Score=29.38 Aligned_cols=51 Identities=10% Similarity=0.185 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 006482 338 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVI 388 (643)
Q Consensus 338 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV 388 (643)
+..|+.+++.|+++++...-.+--+.+|++|+|-+...-.+.++..|.+-+
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~ 104 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQL 104 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666655555666778888877776666666666665533
No 371
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=56.99 E-value=3.3e+02 Score=30.76 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=24.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 006482 329 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN 374 (643)
Q Consensus 329 ~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~ 374 (643)
..|..-...+.+....++.+..++..+...++.=..+.+..+.+..
T Consensus 266 ~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~ 311 (563)
T TIGR00634 266 GSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLA 311 (563)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455555555666666666666666666655433444444333333
No 372
>PRK04325 hypothetical protein; Provisional
Probab=56.92 E-value=97 Score=26.76 Aligned_cols=49 Identities=16% Similarity=0.307 Sum_probs=31.4
Q ss_pred HHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482 386 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 455 (643)
Q Consensus 386 EVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~ 455 (643)
-++.||.|+.-. +..++.|+..+-.-.+ .|+.|+.+-++|..||+.+..
T Consensus 10 Ri~~LE~klAfQ-------E~tIe~LN~vv~~Qq~--------------~I~~L~~ql~~L~~rl~~~~~ 58 (74)
T PRK04325 10 RITELEIQLAFQ-------EDLIDGLNATVARQQQ--------------TLDLLQAQLRLLYQQMRDANP 58 (74)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcc
Confidence 366677666532 5566666655444433 456677788888888888753
No 373
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=56.74 E-value=1.2e+02 Score=27.55 Aligned_cols=63 Identities=16% Similarity=0.318 Sum_probs=32.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 006482 333 QQRSVVNQLKSEMEKLQEEIKVQLVELESF--RNEYANVRLECNAADERAKILASEVIGLEEKAL 395 (643)
Q Consensus 333 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l--~aErdaArle~~aA~ERak~LAaEVV~LEEk~l 395 (643)
..+..+.+|.+.+....+-+..-...++.+ +.+...-+.+.+.-..+-+.|++.+-.++..+-
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334555555555555555444444455555 444455555555555555556666655544443
No 374
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=56.65 E-value=2.8e+02 Score=33.65 Aligned_cols=61 Identities=28% Similarity=0.446 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 006482 323 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 395 (643)
Q Consensus 323 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l 395 (643)
++--+.+.-|.....+.+++++.++|.. +++..|+.-+.++.+ |-.+-+++--..||++-.
T Consensus 535 ~~~~~~~~l~~kke~i~q~re~~~~~~k---------~~l~~e~~~~i~E~~---~~~~~i~~l~~el~eq~~ 595 (809)
T KOG0247|consen 535 ESQMLSSQLNDKKEQIEQLRDEIERLKK---------ENLTTEYSIEILEST---EYEEEIEALDQELEEQKM 595 (809)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhh---------hhhhhhhhhhhhhcc---hhhhhhHHHHHHHHhhhH
Confidence 3344555555666666666666666555 677888888887777 555666666666666544
No 375
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=56.46 E-value=67 Score=33.34 Aligned_cols=42 Identities=26% Similarity=0.368 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhHHHhhhhhHHHHHHHHHHH-------HHHHHHHHhhh
Q 006482 413 SEISSYKKKISSLEKERQDFQSTIEALQEEK-------KMMQSKLRKAS 454 (643)
Q Consensus 413 ~E~~s~~~qlsslekeR~~l~s~i~aLQEEK-------klLqskLRka~ 454 (643)
..+++++.+...||+|-..+..++..||-|- -.|..|+|=..
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777776666666665555554 45566777653
No 376
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=56.43 E-value=2.4e+02 Score=32.59 Aligned_cols=21 Identities=38% Similarity=0.411 Sum_probs=15.7
Q ss_pred hHHHHhhhHHHHHHHHHHhhh
Q 006482 404 LERQLENSQSEISSYKKKISS 424 (643)
Q Consensus 404 lerele~l~~E~~s~~~qlss 424 (643)
.+|||..++...++++||-++
T Consensus 359 aekql~~Ake~~eklkKKrss 379 (575)
T KOG4403|consen 359 AEKQLKEAKEMAEKLKKKRSS 379 (575)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 477888888888888777654
No 377
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=55.94 E-value=2.2e+02 Score=29.83 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=46.4
Q ss_pred HHHHHHhhhHHHHHHHHhhH-HHH-----------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHH
Q 006482 317 SESLAAENSSLTDSYNQQRS-VVN-----------QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 382 (643)
Q Consensus 317 ~esLa~ENsaLt~~yNqQ~~-~v~-----------qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~ 382 (643)
++.+|.+...+.+.|+.|-. .+. .-.+...++++|+.....+|+..+--|+.+-..+..|.++++.
T Consensus 79 t~~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~~Kk~~e~~~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~ar~K~~~ 156 (264)
T cd07654 79 LDAVAQSRQNRCEAYRRYISEPAKTGRSAKEQQLKKCTEQLQRAQAEVQQTVRELSKSRKTYFEREQVAHLAREKAAD 156 (264)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 56677777777777765422 222 2334557788899999999999999998887777777666654
No 378
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=55.93 E-value=74 Score=27.47 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=15.4
Q ss_pred HHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482 418 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 452 (643)
Q Consensus 418 ~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRk 452 (643)
++.++.++..||..|..-++.-..--..+-+||+.
T Consensus 26 Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 26 LRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444444444444444444333444444443
No 379
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=55.42 E-value=1.6e+02 Score=26.42 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHH
Q 006482 343 SEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 378 (643)
Q Consensus 343 ~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~E 378 (643)
.=+.+|...|..|...++.+..+.+.+|....+|.-
T Consensus 68 ~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~ 103 (141)
T TIGR02473 68 RFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARR 103 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433
No 380
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.53 E-value=1.9e+02 Score=33.04 Aligned_cols=124 Identities=17% Similarity=0.304 Sum_probs=67.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHhhhhhhHHHHH----------------HHHHHHH
Q 006482 327 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA---NVRLECNAADERA----------------KILASEV 387 (643)
Q Consensus 327 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErd---aArle~~aA~ERa----------------k~LAaEV 387 (643)
+-+..-+|+.+..+-++|+-+|+-++..-+++.+++++=-. ....++.+|--|. ..+-.++
T Consensus 22 ~ee~~~rq~a~~qa~q~dl~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~ 101 (542)
T KOG0993|consen 22 KEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQM 101 (542)
T ss_pred hhhHHHhccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHHHH
Confidence 34556677888888888999998888888888887753110 1112222222221 1122333
Q ss_pred Hh-HHHHHHHHhhhhhhhHHHHhhhHHHHHH------HHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006482 388 IG-LEEKALRLRSNELKLERQLENSQSEISS------YKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 450 (643)
Q Consensus 388 V~-LEEk~l~LRS~eLKlerele~l~~E~~s------~~~qlsslekeR~~l~s~i~aLQEEKklLqskL 450 (643)
-. ||-...++--++=|+++|+..+..-.++ ++.++.-+..+-..|..++--|-.|-..|..||
T Consensus 102 ~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl 171 (542)
T KOG0993|consen 102 CQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKL 171 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHH
Confidence 33 6666666666777777777776655544 233333333333344444444444444444433
No 381
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=54.43 E-value=1.5e+02 Score=29.83 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhh
Q 006482 378 ERAKILASEVIGLEEKALRLRSNELK 403 (643)
Q Consensus 378 ERak~LAaEVV~LEEk~l~LRS~eLK 403 (643)
.+--.+-.+++.||.+|.++|-...+
T Consensus 189 ~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 189 SKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555444443
No 382
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=54.35 E-value=2.5e+02 Score=28.42 Aligned_cols=88 Identities=14% Similarity=0.180 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHH
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 416 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~ 416 (643)
++.--+--|++|++|+..-..++.........++..++.|..-++..-.+|-.|-.-+-..|.+.-..+.-+.+...++.
T Consensus 61 aL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~ 140 (188)
T PF05335_consen 61 ALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELA 140 (188)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444566888999988888888888999999999999999988888888999998888888888888888888777766
Q ss_pred HHHHHhhh
Q 006482 417 SYKKKISS 424 (643)
Q Consensus 417 s~~~qlss 424 (643)
.-..=|..
T Consensus 141 eK~qLLea 148 (188)
T PF05335_consen 141 EKTQLLEA 148 (188)
T ss_pred HHHHHHHH
Confidence 54333333
No 383
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=54.31 E-value=54 Score=34.83 Aligned_cols=62 Identities=19% Similarity=0.324 Sum_probs=36.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Q 006482 285 HNEDFAALEQHIEDLTQEKFALQRSLEA-SRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 346 (643)
Q Consensus 285 ~~~~faaLqqhIeDLT~EKfaLqR~L~~-s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE 346 (643)
+++.|+.|++.|+.+.+.--.+.-.++. -.+....+++...++..+..++...+.+|+..|+
T Consensus 190 ~~~~~~~~~~ave~ia~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~~~~~~~~~f~~L~~~L~ 252 (276)
T PF05929_consen 190 DDEQFADLQQAVEAIAEQQQELEEAFEEQLSEQETQVAELKQELKEQHEALTEDFAALKEKLS 252 (276)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Confidence 4788999999999887765554443332 2244444555555555555555555555555443
No 384
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.12 E-value=4e+02 Score=30.72 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=30.4
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh
Q 006482 368 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS 424 (643)
Q Consensus 368 aArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlss 424 (643)
-++.+.++++-=...|-+|++.|-+++...|-.+-.++-++.--+.+-+-|.+-+.+
T Consensus 424 ~~~~~l~a~ehv~e~l~~ei~~L~eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~s 480 (542)
T KOG0993|consen 424 SLQQELDASEHVQEDLVKEIQSLQEQLEKERQSEQELEWQLDDDVEQCSNCDASFAS 480 (542)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666777777777777766655544444433333333333333333
No 385
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=54.07 E-value=4.8e+02 Score=31.64 Aligned_cols=165 Identities=18% Similarity=0.191 Sum_probs=99.6
Q ss_pred ccccccccccCCchhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Q 006482 273 SIENQHGFYSTKHNEDFAALEQH------IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 346 (643)
Q Consensus 273 ~~e~~~~F~s~~~~~~faaLqqh------IeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE 346 (643)
++..++-++..+.+.--+..+.- .-....-+.-..|-.+..+...+-|.++|+.+.+-=|.-...+.++...++
T Consensus 400 ~~p~~~~~i~~d~k~~~aki~~~~vg~~~~~~i~~ll~~~~r~~qg~r~~~~~L~~~~s~~~k~~~t~~~~~~~~~a~~d 479 (732)
T KOG4250|consen 400 SLPKVVPYIDQDKKASLAKIQLRKVGLEALREIDTLLEDQERLFQGLRAVMELLVRTNSELLKVKTTSRSALQQLLAKLD 479 (732)
T ss_pred CCCCCccchhccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 55667777777777666655532 122222233344555666888999999999999988888888877777666
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhh---HHHHHHHHHHHHHhHHHHHHHHhhhhhhh-HHHHhhhHHHHHHHHHHh
Q 006482 347 KLQEEIKVQLVELESFRNEYANVRLECNA---ADERAKILASEVIGLEEKALRLRSNELKL-ERQLENSQSEISSYKKKI 422 (643)
Q Consensus 347 ~Lq~Ei~aQ~~~le~l~aErdaArle~~a---A~ERak~LAaEVV~LEEk~l~LRS~eLKl-erele~l~~E~~s~~~ql 422 (643)
..-.- +.+-.+.+-.+++... +.+++.+.|...+.+|..+-.+-.....+ .-..+.++.+++.|.++-
T Consensus 480 ~~~~~--------~~~~~~~~~e~~~i~~a~d~~~~l~r~aev~~~~~~~~~~i~~~~~~~~~l~~~~i~~~~s~~~~r~ 551 (732)
T KOG4250|consen 480 FMHSS--------IQIDLKKDSEQQEIGIASDKRTKLLREAEVKSDIEACIKVIQWELEDLMSLDTEIIHSEKSPYKRRQ 551 (732)
T ss_pred HHHHH--------hhcchhccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhchHHHhcccCCccccc
Confidence 55443 4444444555554443 45666677777777777665553322221 112334555666654433
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482 423 SSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 455 (643)
Q Consensus 423 sslekeR~~l~s~i~aLQEEKklLqskLRka~~ 455 (643)
. ..++.|+++-+-|...+++..+
T Consensus 552 ~----------~~l~~l~~~~~elyk~~~k~r~ 574 (732)
T KOG4250|consen 552 G----------AQLESLLERARELYKQLKKRRA 574 (732)
T ss_pred H----------HHHHHHHHHHHHHHHHHHhchh
Confidence 3 3566677777777777776655
No 386
>PRK02793 phi X174 lysis protein; Provisional
Probab=54.02 E-value=1e+02 Score=26.45 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCC
Q 006482 433 QSTIEALQEEKKMMQSKLRKASGS 456 (643)
Q Consensus 433 ~s~i~aLQEEKklLqskLRka~~~ 456 (643)
+..|+.|+.+-++|..||+.+..+
T Consensus 35 q~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 35 EMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 445678888889999999887554
No 387
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=53.60 E-value=2.5e+02 Score=28.23 Aligned_cols=43 Identities=37% Similarity=0.418 Sum_probs=21.2
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 006482 381 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 423 (643)
Q Consensus 381 k~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qls 423 (643)
+.+-.++..||.++++|+-..-++..+.+....||.+.+..++
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~ 169 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAE 169 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666554444444444444444444443333
No 388
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=53.49 E-value=4e+02 Score=30.56 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 006482 291 ALEQHIEDLTQ 301 (643)
Q Consensus 291 aLqqhIeDLT~ 301 (643)
.+.|-+.||..
T Consensus 10 ~~dqr~~~~~~ 20 (459)
T KOG0288|consen 10 ENDQRLIDLNT 20 (459)
T ss_pred hhhhHHHHHHH
Confidence 34444444443
No 389
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=53.10 E-value=58 Score=29.18 Aligned_cols=49 Identities=18% Similarity=0.330 Sum_probs=34.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 006482 328 TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 383 (643)
Q Consensus 328 t~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L 383 (643)
+-+.|+-...|..|-..+.||+++ +++++.+..+|+.++..|.+|.-.-
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~d-------v~a~~~~~qAAk~eaarAn~rldn~ 72 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLEND-------VNAMRSDVQAAKDEAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 445667777777777777777765 4566777777777777777776543
No 390
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=52.58 E-value=3.6e+02 Score=32.73 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=42.5
Q ss_pred HHHHHHHH-HHHHHHHHH----HHHHHhhhHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHH
Q 006482 301 QEKFALQR-SLEASRALS----ESLAAENSSLTDSYNQQRSVV---NQLKSEMEKLQEEIKVQLVE 358 (643)
Q Consensus 301 ~EKfaLqR-~L~~s~~l~----esLa~ENsaLt~~yNqQ~~~v---~qLk~~mE~Lq~Ei~aQ~~~ 358 (643)
++||.++| .+.++.... --|-+.-+.|.+-||+.-..+ -.||.+|+.|+.+++|+.+.
T Consensus 485 k~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s 550 (762)
T PLN03229 485 QERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALS 550 (762)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhc
Confidence 36888888 888875411 125556888999999987663 37999999999998866553
No 391
>PRK14143 heat shock protein GrpE; Provisional
Probab=52.21 E-value=2.9e+02 Score=28.81 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 006482 340 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 386 (643)
Q Consensus 340 qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE 386 (643)
+|+.+++.|+++++...-.+--+.+|.+|+|-+...-.++++..|.+
T Consensus 71 ~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~ 117 (238)
T PRK14143 71 QLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKC 117 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444455666777666655555555555544
No 392
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=52.01 E-value=5.6e+02 Score=31.89 Aligned_cols=169 Identities=25% Similarity=0.268 Sum_probs=89.4
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHhhHHHH-------------H
Q 006482 278 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENS----SLTDSYNQQRSVVN-------------Q 340 (643)
Q Consensus 278 ~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENs----aLt~~yNqQ~~~v~-------------q 340 (643)
.|-+|..+ +...+.||+-|||.+--.|.+..+.=.+=++-|...++ .+...|-.|+..+. .
T Consensus 613 ~d~ls~mk--d~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~ 690 (984)
T COG4717 613 LDILSTMK--DLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEG 690 (984)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 34445444 57889999999999987777776665666666665553 34444444444332 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHH--HHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHH
Q 006482 341 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA--KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 418 (643)
Q Consensus 341 Lk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa--k~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~ 418 (643)
.+.-+++|.-++++++... +.|... =.+|..|+.+. +.-|+++-.|-+.|-++++-+--++.= .+-.-|+...
T Consensus 691 ~~~~t~El~~~L~ae~~~~---~kei~d-Lfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v-~~~~~eL~~~ 765 (984)
T COG4717 691 NIERTKELNDELRAELELH---RKEILD-LFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGV-AAEAYELSAS 765 (984)
T ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHH-HHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHhhhh
Confidence 2222223333333333222 333322 34555555443 455677777777777775544433320 0111122222
Q ss_pred HHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482 419 KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 419 ~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
..+-+--++|=.-+..+++++-||---++.+++..
T Consensus 766 ~~~~~~~e~E~~~lEe~~d~~~ee~~el~a~v~~~ 800 (984)
T COG4717 766 LDQRELKEEELALLEEAIDALDEEVEELHAQVAAL 800 (984)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222225666666777788877776666665544
No 393
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=51.76 E-value=72 Score=31.25 Aligned_cols=8 Identities=13% Similarity=0.534 Sum_probs=4.2
Q ss_pred cccccccc
Q 006482 275 ENQHGFYS 282 (643)
Q Consensus 275 e~~~~F~s 282 (643)
.+|..||.
T Consensus 87 ~~f~syY~ 94 (184)
T PF05791_consen 87 TTFQSYYD 94 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34555654
No 394
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=51.40 E-value=50 Score=30.04 Aligned_cols=34 Identities=6% Similarity=0.009 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 006482 338 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 371 (643)
Q Consensus 338 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArl 371 (643)
..+++.+++.++++++.....++.++.|.+..+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4445555555555555555555666666655544
No 395
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=51.39 E-value=3.9e+02 Score=29.86 Aligned_cols=82 Identities=11% Similarity=0.118 Sum_probs=47.5
Q ss_pred HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------HHHH-HhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 006482 316 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK--------VQLV-ELESFRNEYANVRLECNAADERAKILASE 386 (643)
Q Consensus 316 l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~--------aQ~~-~le~l~aErdaArle~~aA~ERak~LAaE 386 (643)
..-++-.|-...+.+|-+++.++..-|+.+--+++-+- .+-. +|..-..=.--|..+|+.|.-=-...|+-
T Consensus 77 ~er~~r~e~QkAa~~FeRat~vl~~AkeqVsl~~~sL~~~~~~~~~~~~~evlnh~~qrV~EaE~e~t~aE~~Has~a~~ 156 (426)
T KOG2008|consen 77 VERQARLEAQKAAQDFERATEVLRAAKEQVSLAEQSLLEDDKRQFDSAWQEVLNHATQRVMEAEQEKTRAELVHASTAAR 156 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677788999999999988888755554322 1111 11111111233555666665555555666
Q ss_pred HHhHHHHHHHH
Q 006482 387 VIGLEEKALRL 397 (643)
Q Consensus 387 VV~LEEk~l~L 397 (643)
...|+.+++++
T Consensus 157 ~l~l~~~~R~~ 167 (426)
T KOG2008|consen 157 YLALMGRMRQL 167 (426)
T ss_pred HHHHHHHHHHH
Confidence 66777777654
No 396
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=50.55 E-value=1.6e+02 Score=25.58 Aligned_cols=60 Identities=22% Similarity=0.328 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 006482 306 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 365 (643)
Q Consensus 306 LqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE 365 (643)
|++-|.-=+.|-|+|-.-|.++-++|+.-..-=...+.+.+-+...++..+..++.++.|
T Consensus 8 l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~E 67 (68)
T PF11577_consen 8 LQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLKEE 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 556666677788889999999999999887777777777777777777777777666654
No 397
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=50.39 E-value=3e+02 Score=28.23 Aligned_cols=115 Identities=20% Similarity=0.330 Sum_probs=63.7
Q ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 006482 319 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 398 (643)
Q Consensus 319 sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR 398 (643)
++-.-=+.|-.+|..+..++.-++.-=|-|...++.+...+.....-|.+.+ .+|.+.-..--.|+-.+.. ...
T Consensus 87 s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK---~hAeekL~~ANeei~~v~~---~~~ 160 (207)
T PF05010_consen 87 SLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALK---AHAEEKLEKANEEIAQVRS---KHQ 160 (207)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---HhH
Confidence 3444445677888888888888888777777777777766665544444433 2333222221122221111 122
Q ss_pred hhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHH
Q 006482 399 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 439 (643)
Q Consensus 399 S~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aL 439 (643)
.+.++|+-.|.-..-.+.++++.|..-.||-.+|-.+.|-|
T Consensus 161 ~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 161 AELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444444445556677777777777777776665544
No 398
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=49.85 E-value=95 Score=32.55 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=32.5
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 006482 325 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 363 (643)
Q Consensus 325 saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~ 363 (643)
..+.++|++....-.+|...++.|+.+|+.|...|+.+.
T Consensus 176 ~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n 214 (259)
T PF08657_consen 176 PGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMN 214 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367778888888888888889999999999988888873
No 399
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=49.68 E-value=3.1e+02 Score=28.23 Aligned_cols=15 Identities=20% Similarity=0.570 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 006482 336 SVVNQLKSEMEKLQE 350 (643)
Q Consensus 336 ~~v~qLk~~mE~Lq~ 350 (643)
..+..|+.++..++.
T Consensus 142 ~~i~~l~~~~~~~~~ 156 (301)
T PF14362_consen 142 AEIAALQAEIDQLEK 156 (301)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 400
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=49.42 E-value=1.3e+02 Score=24.37 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHhHHHHHhhHHHHHHHHHhhhHHHHHHHH
Q 006482 538 ALISELALEKEELVQALSS------------ELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ 588 (643)
Q Consensus 538 aLisEla~Ere~l~~aL~~------------es~~~s~Lk~lN~ELsrKLE~qTQRLELltsq 588 (643)
+-+.+|..+|+.++..|.. ......++.+++.++...++....+|.-...+
T Consensus 11 e~l~~l~~~R~~ll~~l~~~~~~~~~~~~~~~~~~l~~Il~~d~~i~~ll~~~~~~l~~~l~~ 73 (84)
T PF05400_consen 11 EELEELLDERQELLERLFEEQAALSPPEQEELRELLRRILELDQEIRALLQARRDELKQELRQ 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccCChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888899999977765 33556678888999999998888887765543
No 401
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=49.24 E-value=3.6e+02 Score=30.05 Aligned_cols=15 Identities=13% Similarity=0.333 Sum_probs=8.9
Q ss_pred chHHHHHHHHHHHhc
Q 006482 616 DEVVERVLGWIMKLF 630 (643)
Q Consensus 616 devvervlgwimklf 630 (643)
|+..+|+..++.+.|
T Consensus 387 ~~q~~~L~~~L~k~~ 401 (445)
T PRK13428 387 DAQRTRLTEVLSRIY 401 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666666655
No 402
>PRK15396 murein lipoprotein; Provisional
Probab=48.88 E-value=71 Score=28.33 Aligned_cols=48 Identities=13% Similarity=0.369 Sum_probs=37.6
Q ss_pred HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 006482 407 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 454 (643)
Q Consensus 407 ele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~ 454 (643)
+++.|..++..+..++..+..|-++++.-+.+-+||-.+.-.||=+.+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777788888888888888888888888888888876654
No 403
>PRK10869 recombination and repair protein; Provisional
Probab=48.64 E-value=4.7e+02 Score=29.94 Aligned_cols=37 Identities=14% Similarity=0.004 Sum_probs=17.4
Q ss_pred HhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh
Q 006482 388 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS 424 (643)
Q Consensus 388 V~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlss 424 (643)
-.+|+|+..++.=.-|--..++.+..-...+++++..
T Consensus 299 ~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~ 335 (553)
T PRK10869 299 AELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQ 335 (553)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4455666555433333333444444444444444444
No 404
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=48.63 E-value=1.8e+02 Score=25.12 Aligned_cols=65 Identities=18% Similarity=0.334 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 006482 306 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 370 (643)
Q Consensus 306 LqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaAr 370 (643)
|.+-|.---+...+|-.|-+.|...=-.....|..|+..+..++.++......++....+.+..+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555666777777777777777777777777777777766666655555555554443
No 405
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=48.49 E-value=4.6e+02 Score=29.86 Aligned_cols=126 Identities=22% Similarity=0.317 Sum_probs=67.8
Q ss_pred cCCcccccccCCCCCCCcCCCCccccCCCccccccCCCcccc-----ccccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 006482 233 TGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSI-----ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQ 307 (643)
Q Consensus 233 ~~~~s~~~~sn~~s~~d~s~~p~v~~~n~v~~~~~~~dE~~~-----e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLq 307 (643)
.+.|..--.+.+|+-|.-. +|-+-++.-| ..+-+|. +-.-|...-..|.---.
T Consensus 44 DGsFlVRdAstm~GdYTLt-------------l~k~g~~KLikI~h~DgKyGF~---d~ltf~SVVelIn~yr~------ 101 (464)
T KOG4637|consen 44 DGSFLVRDASTMQGDYTLT-------------LRKGGNNKLIKIVHRDGKYGFS---DPLTFNSVVELINHYRN------ 101 (464)
T ss_pred CCcEEeeccccCCCceEEE-------------EecCCccceeeeEEecCccCCC---CchhhHHHHHHHHHHhh------
Confidence 4555555555588887654 2223333333 3466675 44556655555554333
Q ss_pred HHHHHHHHHHHHHHHhhhHHH--------HHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 006482 308 RSLEASRALSESLAAENSSLT--------DSYNQQRS----VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA 375 (643)
Q Consensus 308 R~L~~s~~l~esLa~ENsaLt--------~~yNqQ~~----~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~a 375 (643)
++|+.=|.+|- +.-|.|-. .++.+..++...-+.+++--.+++.+..||+++.+|...
T Consensus 102 ----------~SL~~yN~~LDvrLlyPVs~~r~dq~~kp~~~~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~ 171 (464)
T KOG4637|consen 102 ----------ESLAQYNPKLDVRLLYPVSRYRQDQNVKPDFNINAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQM 171 (464)
T ss_pred ----------hHHHhhCcccceeeechHHHhhhccccCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555541 12222211 233333333333334444567788999999999988765
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 006482 376 ADERAKILASEVIGLEEKAL 395 (643)
Q Consensus 376 A~ERak~LAaEVV~LEEk~l 395 (643)
|.+|.|+++=..|+.
T Consensus 172 -----k~t~~~afn~tikif 186 (464)
T KOG4637|consen 172 -----KRTAIEAFNETIKIF 186 (464)
T ss_pred -----HHHHHHHhhhHHHHH
Confidence 356677766555554
No 406
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=48.48 E-value=3e+02 Score=27.72 Aligned_cols=78 Identities=18% Similarity=0.315 Sum_probs=56.0
Q ss_pred cccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----h--hHHHHHHHHHH
Q 006482 272 SSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ----Q--RSVVNQLKSEM 345 (643)
Q Consensus 272 ~~~e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNq----Q--~~~v~qLk~~m 345 (643)
..|+....+-+. .....|++.+.+|.+-+-...--|....++-+.-+.+.+.+-.+|-. . ..+...++.++
T Consensus 10 ~l~~~~~~v~~~---~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l 86 (296)
T PF13949_consen 10 SLLEKSEEVRSE---GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKEL 86 (296)
T ss_dssp HHHHHHHHHHHT---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHH
T ss_pred HHHHHHHHHHhC---CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHH
Confidence 334444444433 45888999999999999989999999999999999999999999832 1 22334677777
Q ss_pred HHHHHHH
Q 006482 346 EKLQEEI 352 (643)
Q Consensus 346 E~Lq~Ei 352 (643)
++++.-+
T Consensus 87 ~~~~~~L 93 (296)
T PF13949_consen 87 QKYREYL 93 (296)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 407
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=48.45 E-value=74 Score=32.81 Aligned_cols=61 Identities=25% Similarity=0.273 Sum_probs=42.3
Q ss_pred HHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 006482 387 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 454 (643)
Q Consensus 387 VV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~ 454 (643)
|..||..+-.-....+-|..+|+.++.||.++|-+++. ++--|+.|++.-|-|+..|=++.
T Consensus 42 ~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~-------~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 42 VTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQE-------NQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555433334578899999999999999999996 34456666766666665555443
No 408
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.28 E-value=1.1e+02 Score=36.17 Aligned_cols=119 Identities=20% Similarity=0.268 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhh
Q 006482 344 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 423 (643)
Q Consensus 344 ~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qls 423 (643)
++|.|++++.-++..|.+-+.|.-|- .-|| =--|++-.|+|..-+- |++-.|..++.||.+++--|.
T Consensus 47 ~letLrddLrlylksl~~aMieLIN~----DYAD--FVnLStnLVgld~aln-------~i~qpL~qlreei~s~rgsV~ 113 (705)
T KOG2307|consen 47 DLETLRDDLRLYLKSLQNAMIELIND----DYAD--FVNLSTNLVGLDDALN-------KIEQPLNQLREEIKSTRGSVG 113 (705)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhh----hHHH--HHhhhhhhccHHHHHH-------HHHhHHHHHHHHHHHHHhhHH
Confidence 45556666666666666655554440 0011 1134555566655444 556667777777777776666
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCcC--CCCCcccccccccc
Q 006482 424 SLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSID--FGKTAASTVNASTS 475 (643)
Q Consensus 424 slekeR~~l~s~i~aLQEEKklLqskLRka~~~gk~~~--~~k~~~~~kDASTS 475 (643)
.++..=+.-.+...+.+|-|+.|+..+.=..+-+|... +.+++..+.|.-|+
T Consensus 114 ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieKL~k~L~s~psk~q~~~a~s 167 (705)
T KOG2307|consen 114 EAERALRQQCSELCSNREKKIELLDLIYVLVAIEKLSKMLLSPPSKEQQDGATS 167 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccch
Confidence 55443332334555666777777766555555555422 35555554454444
No 409
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.23 E-value=5.5e+02 Score=30.66 Aligned_cols=162 Identities=19% Similarity=0.164 Sum_probs=76.1
Q ss_pred ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006482 275 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 354 (643)
Q Consensus 275 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a 354 (643)
+-||+=|=-.++-=-+++|.||.-|-..|-.-...|+-.++=-+.+-.--+.|.+||-+-.-.-+-|-..|.+|.+-.
T Consensus 569 ~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~-- 646 (741)
T KOG4460|consen 569 QVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSF-- 646 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc--
Confidence 445555555555555666777776665554433334444444444444445556666543333333333333333311
Q ss_pred HHHHhhh-hHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhH
Q 006482 355 QLVELES-FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQ 433 (643)
Q Consensus 355 Q~~~le~-l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~ 433 (643)
...+-. ..+|||= .+|..-+.--.+.|++-+-.+-.+.-+ +|.-.+-..+.. -+++-+--++.|.-+|
T Consensus 647 -~~~lp~l~~AErdF-k~Elq~~~~~~~~L~~~iET~~~~~~K--------Q~~H~~~v~~al-~K~~Y~l~~~Q~~~iq 715 (741)
T KOG4460|consen 647 -HSELPVLSDAERDF-KKELQLIPDQLRHLGNAIETVTMKKDK--------QQQHMEKVLSAL-PKPTYILSAYQRKCIQ 715 (741)
T ss_pred -cccCCcchhHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhc-cCCcccccHHHHHHHH
Confidence 111111 2667765 233345555555565544444433332 222111111100 0112222267778889
Q ss_pred HHHHHHHHHHHHHHHH
Q 006482 434 STIEALQEEKKMMQSK 449 (643)
Q Consensus 434 s~i~aLQEEKklLqsk 449 (643)
+++..|-++-...-.+
T Consensus 716 siL~~L~~~i~~~~k~ 731 (741)
T KOG4460|consen 716 SILKELGEHIREMVKQ 731 (741)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998888776544333
No 410
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=47.75 E-value=3.3e+02 Score=27.89 Aligned_cols=29 Identities=21% Similarity=0.223 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006482 340 QLKSEMEKLQEEIKVQLVELESFRNEYAN 368 (643)
Q Consensus 340 qLk~~mE~Lq~Ei~aQ~~~le~l~aErda 368 (643)
+++.+++.++.++......+...+.++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~R 122 (327)
T TIGR02971 94 KLFKDVAAQQATLNRLEAELETAQREVDR 122 (327)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 411
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=47.73 E-value=5.1e+02 Score=30.15 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhhC
Q 006482 441 EEKKMMQSKLRKASG 455 (643)
Q Consensus 441 EEKklLqskLRka~~ 455 (643)
+|+.-|.+||-|..+
T Consensus 510 ~ERqkLKs~leKLva 524 (527)
T PF15066_consen 510 EERQKLKSRLEKLVA 524 (527)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456677777776654
No 412
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=47.72 E-value=4.3e+02 Score=31.62 Aligned_cols=52 Identities=21% Similarity=0.267 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006482 310 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 361 (643)
Q Consensus 310 L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~ 361 (643)
+++|+++......+-+.|..+-+++...+.+.+.+++++++|++.....++.
T Consensus 499 i~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~ 550 (771)
T TIGR01069 499 IEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQ 550 (771)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665666666666666666666666666665555544444433
No 413
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=47.67 E-value=93 Score=34.05 Aligned_cols=75 Identities=21% Similarity=0.365 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482 378 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 378 ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
++-+.|-.++-.|.+++.+++..--++++.-. ....-.....++..+.+.+..+...++.|+++.+.|+..|++.
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344555555555555555444222222111 1111123345556666677778888999999999999999887
No 414
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=47.52 E-value=4e+02 Score=28.87 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006482 293 EQHIEDLTQEKFALQRSLEASRALS-----ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 354 (643)
Q Consensus 293 qqhIeDLT~EKfaLqR~L~~s~~l~-----esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a 354 (643)
=||.|..-++=+.|=..|+.-.+=. .+|.+.-..+-+.--+|...|.+|+++++.|+.+|+.
T Consensus 40 yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 40 YQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566655555555555555443322 2344444444455555666666666666666665543
No 415
>PRK09793 methyl-accepting protein IV; Provisional
Probab=47.29 E-value=4.4e+02 Score=29.25 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=46.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006482 285 HNEDFAALEQHIEDLTQEKFALQRS----LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 353 (643)
Q Consensus 285 ~~~~faaLqqhIeDLT~EKfaLqR~----L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 353 (643)
..|||..|-..+..|...=-.+... -..-...+++++.-+..+..+.++|...+.+....|+++-..+.
T Consensus 241 ~~dE~g~l~~sln~m~~~L~~~i~~i~~~~~~~~~~~~eia~~~~~ls~~~e~qa~~~~~~~~s~~~~~~~~~ 313 (533)
T PRK09793 241 GRNEITAIFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASMEQLTATVG 313 (533)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777666666655432222222 22233456778888888999999999999999999988877544
No 416
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=46.96 E-value=2e+02 Score=26.06 Aligned_cols=29 Identities=14% Similarity=0.324 Sum_probs=24.9
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 006482 367 ANVRLECNAADERAKILASEVIGLEEKAL 395 (643)
Q Consensus 367 daArle~~aA~ERak~LAaEVV~LEEk~l 395 (643)
++.+.-|...+.-=+.++.||+.+|+++.
T Consensus 36 ~~y~~~~~~iT~~f~~~S~ei~~ie~~L~ 64 (97)
T PF14966_consen 36 EAYRQLCHEITQEFSAISKEILAIEAELR 64 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77888888899989999999999988764
No 417
>PRK14140 heat shock protein GrpE; Provisional
Probab=46.82 E-value=1e+02 Score=31.17 Aligned_cols=50 Identities=8% Similarity=0.230 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 386 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE 386 (643)
.+++|+.+++.|+.+++...-.+--+.+|.+|+|-+...-.+.++..|.+
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~ 87 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQ 87 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555656666555555555566777777777666666666655544
No 418
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=46.63 E-value=1.1e+02 Score=28.65 Aligned_cols=22 Identities=9% Similarity=0.259 Sum_probs=4.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH
Q 006482 328 TDSYNQQRSVVNQLKSEMEKLQ 349 (643)
Q Consensus 328 t~~yNqQ~~~v~qLk~~mE~Lq 349 (643)
..|...|...+.+....|..+.
T Consensus 36 ~~R~~~Q~~~~~~~~~~l~~i~ 57 (141)
T PF13874_consen 36 KKRVEAQEEEIAQHRERLKEIN 57 (141)
T ss_dssp ----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 419
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=46.54 E-value=1.2e+02 Score=34.89 Aligned_cols=42 Identities=10% Similarity=0.266 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHH
Q 006482 336 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 378 (643)
Q Consensus 336 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~E 378 (643)
..++.++.++++.++...+-...|.. +.+...+++...+..+
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKK 205 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHh
Confidence 34455555555555555544444443 4555555555555444
No 420
>PRK14148 heat shock protein GrpE; Provisional
Probab=46.24 E-value=1.4e+02 Score=30.25 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 006482 338 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 386 (643)
Q Consensus 338 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE 386 (643)
+.+|+.+++.|+.+++...-.+--+.+|.+|+|-+...-.+.++..|.+
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~ 90 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIE 90 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554444444555667777665555555555555443
No 421
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=46.13 E-value=1.4e+02 Score=33.26 Aligned_cols=85 Identities=26% Similarity=0.370 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHhhh
Q 006482 289 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVN-------QLKSEMEKLQEEIKVQLVELES 361 (643)
Q Consensus 289 faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~-------qLk~~mE~Lq~Ei~aQ~~~le~ 361 (643)
..+|.|.+.|+++|--.|-|.|+-+.+.-+.|.+|-++ .|++|.+.+. +|.+++.-|-.||+. ++-|+.
T Consensus 150 L~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQa---tf~eq~~ml~kRQ~yI~~LEsKVqDLm~Eirn-LLQle~ 225 (401)
T PF06785_consen 150 LDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQA---TFVEQHSMLDKRQAYIGKLESKVQDLMYEIRN-LLQLES 225 (401)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccccchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Confidence 34556777777777788888888888888888777654 5788877654 445555444444433 233444
Q ss_pred hHHHHHHHhhhhhhHHH
Q 006482 362 FRNEYANVRLECNAADE 378 (643)
Q Consensus 362 l~aErdaArle~~aA~E 378 (643)
=+.| +.-++.+..+.+
T Consensus 226 ~~~e-~~p~~~~~~s~~ 241 (401)
T PF06785_consen 226 DMKE-SMPSTPSPSSQD 241 (401)
T ss_pred hhhh-cCCCCCcchhhh
Confidence 3444 445555533333
No 422
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=46.09 E-value=3.3e+02 Score=27.42 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006482 288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 351 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 351 (643)
++..|+--|..|-.-|...-..++..+.+-+.+... ......--..+.+|+..|.+||++
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~----~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK----EAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHHHHHHHH
Confidence 567777888888888887777777777776666665 112233345666777777766664
No 423
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=45.87 E-value=1.1e+02 Score=26.95 Aligned_cols=29 Identities=41% Similarity=0.479 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006482 295 HIEDLTQEKFALQRSLEASRALSESLAAE 323 (643)
Q Consensus 295 hIeDLT~EKfaLqR~L~~s~~l~esLa~E 323 (643)
.|-+|.+++-.++..++..++---.++.+
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~ 58 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKE 58 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44456666666666665555444444333
No 424
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=45.84 E-value=2.4e+02 Score=29.34 Aligned_cols=48 Identities=19% Similarity=0.352 Sum_probs=22.3
Q ss_pred HHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006482 321 AAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 368 (643)
Q Consensus 321 a~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErda 368 (643)
.+||..+..+-+--...+...+.++|.++.+..+=..-.+.+.-|||+
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eydr 197 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDR 197 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 334444444444444444444444444444444444444444445544
No 425
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=45.62 E-value=6e+02 Score=30.35 Aligned_cols=168 Identities=17% Similarity=0.206 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006482 285 HNEDFAALEQHIEDLTQEKFALQR--SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 362 (643)
Q Consensus 285 ~~~~faaLqqhIeDLT~EKfaLqR--~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 362 (643)
++..+..|.+-+.++.+.-.-.-+ ++.....+.++.+.--.-|-+.==....++.++...|--||.-+.+-...+..+
T Consensus 143 qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~ 222 (629)
T KOG0963|consen 143 QQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDL 222 (629)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q ss_pred -----------HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhh---------------HHHHhhhHHHHH
Q 006482 363 -----------RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKL---------------ERQLENSQSEIS 416 (643)
Q Consensus 363 -----------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKl---------------erele~l~~E~~ 416 (643)
.+|+-.+-.+...|.-|+..|-.||-.|.+++..--+.-=.. ++++..|..+|.
T Consensus 223 ~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~ 302 (629)
T KOG0963|consen 223 KSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIE 302 (629)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482 417 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 452 (643)
Q Consensus 417 s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRk 452 (643)
+.++-+..+...--.-++.+++.=..|+--...|++
T Consensus 303 ~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~ 338 (629)
T KOG0963|consen 303 RLEASLVEEREKHKAQISALEKELKAKISELEELKE 338 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 426
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=45.24 E-value=4.3e+02 Score=28.52 Aligned_cols=7 Identities=14% Similarity=0.553 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 006482 308 RSLEASR 314 (643)
Q Consensus 308 R~L~~s~ 314 (643)
-.+++++
T Consensus 99 ~~l~~A~ 105 (390)
T PRK15136 99 QAFEKAK 105 (390)
T ss_pred HHHHHHH
Confidence 3344443
No 427
>PRK00736 hypothetical protein; Provisional
Probab=44.97 E-value=1.9e+02 Score=24.59 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=30.6
Q ss_pred HHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482 387 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 455 (643)
Q Consensus 387 VV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~ 455 (643)
+..||.|+.-. +.-++.|+..+-+-.+ .|+.|+.+-++|..||+.+..
T Consensus 7 i~~LE~klafq-------e~tie~Ln~~v~~Qq~--------------~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 7 LTELEIRVAEQ-------EKTIEELSDQLAEQWK--------------TVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcc
Confidence 56666666532 5566666655544433 456677788888888887654
No 428
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=44.86 E-value=4.5e+02 Score=28.73 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=15.0
Q ss_pred HHhHHHHHhhHHHHHHHHHhhhHH
Q 006482 559 AQSSKLKDLNNELSRKLEHQTQRL 582 (643)
Q Consensus 559 ~~~s~Lk~lN~ELsrKLE~qTQRL 582 (643)
..+.+||..|-||+.|.-.-..||
T Consensus 278 ~l~dQLK~qNQEL~ski~ELE~rL 301 (307)
T PF10481_consen 278 QLLDQLKAQNQELRSKINELELRL 301 (307)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345677788888777765443333
No 429
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=44.69 E-value=3.8e+02 Score=29.01 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=10.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH
Q 006482 332 NQQRSVVNQLKSEMEKLQEEIK 353 (643)
Q Consensus 332 NqQ~~~v~qLk~~mE~Lq~Ei~ 353 (643)
....-++..|.=+...|+.||.
T Consensus 29 D~~~LqLqNl~YE~~hL~kEI~ 50 (355)
T PF09766_consen 29 DALHLQLQNLLYEKSHLQKEIK 50 (355)
T ss_pred hHHHHHHhHHHHHHHHHHHHHH
Confidence 3333344444445555555554
No 430
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=44.65 E-value=2.4e+02 Score=25.57 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=35.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhh
Q 006482 363 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS 424 (643)
Q Consensus 363 ~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlss 424 (643)
..+...++...-....+-+.|+.|+-.|.++.-.-+. ..+...+++.+..++...+++..-
T Consensus 16 ~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v 76 (106)
T PF05837_consen 16 QEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRV 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455666777888888888777665544 334455555555555555555443
No 431
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=44.57 E-value=52 Score=35.58 Aligned_cols=44 Identities=25% Similarity=0.423 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482 410 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 410 ~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
++...+..++.+++.++..-.++...+..++.+.+.|..+|+..
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDL 184 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555556666666666666666654
No 432
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=44.54 E-value=4.3e+02 Score=28.37 Aligned_cols=161 Identities=20% Similarity=0.280 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006482 287 EDFAALEQHIEDLTQEKF---ALQRSLEASRALSESLAA----ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 359 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKf---aLqR~L~~s~~l~esLa~----ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l 359 (643)
++-..|++.|. .||- ++...=.-..+++.+|.. |.++|.|=-..-+-.+.++.+...++=.-+..++..|
T Consensus 54 e~sr~L~~LIk---~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~L 130 (271)
T PF13805_consen 54 ELSRKLQRLIK---AEKSVIRSLESAARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHL 130 (271)
T ss_dssp TTCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44477888774 4553 222222334556666653 4555666555556555555555555555566666666
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhh-hhhhHHHHhhhHHHHHHHHHHhhhHH--HhhhhhHHHH
Q 006482 360 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSN-ELKLERQLENSQSEISSYKKKISSLE--KERQDFQSTI 436 (643)
Q Consensus 360 e~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~-eLKlerele~l~~E~~s~~~qlssle--keR~~l~s~i 436 (643)
..++. ..........|=+.|..|+.-|+.|-- .+. -..||.||-.+..+.--.++++.-+. |=|..+..-+
T Consensus 131 K~IR~----~E~sl~p~R~~r~~l~d~I~kLk~k~P--~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f 204 (271)
T PF13805_consen 131 KSIRN----REESLQPSRDRRRKLQDEIAKLKYKDP--QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKF 204 (271)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-T--TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHhHHHHHhHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHH
Confidence 66632 111223344555566777766654211 000 01223333333333333333333332 2255577788
Q ss_pred HHHHH--HHHHHHHHHHhhhCC
Q 006482 437 EALQE--EKKMMQSKLRKASGS 456 (643)
Q Consensus 437 ~aLQE--EKklLqskLRka~~~ 456 (643)
+||+| ||..+-.+.=++...
T Consensus 205 ~Al~E~aEK~~Ila~~gk~Ll~ 226 (271)
T PF13805_consen 205 DALIERAEKQAILAEYGKRLLE 226 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 898888877666553
No 433
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=44.43 E-value=1.2e+02 Score=27.98 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006482 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 333 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNq 333 (643)
+.|+.|+++|..|..+=-+|...+..--+=+..|--||..|-++..+
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888776666666665555556666666666665544
No 434
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=44.33 E-value=3.8e+02 Score=27.74 Aligned_cols=89 Identities=20% Similarity=0.243 Sum_probs=53.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 006482 363 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 442 (643)
Q Consensus 363 ~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEE 442 (643)
..+.-.-...|.+|..+-..|=.++..-=..|..+ ++.|..+...+...--++-...+.|+.+..+++.|..=
T Consensus 52 ~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~-------R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i 124 (291)
T PF10475_consen 52 SREISEKSDSFFQAMSSVQELQDELEEALVICKNL-------RRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQI 124 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555567777776666666555555555544 44444555555555555666667777777777777744
Q ss_pred H--HHHHHHHHhhhCCCC
Q 006482 443 K--KMMQSKLRKASGSGK 458 (643)
Q Consensus 443 K--klLqskLRka~~~gk 458 (643)
| ...+.+|+.....|.
T Consensus 125 ~~v~~~~~~l~~ll~~~d 142 (291)
T PF10475_consen 125 KTVQQTQSRLQELLEEGD 142 (291)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 3 445666666665554
No 435
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.13 E-value=5.7e+02 Score=29.71 Aligned_cols=120 Identities=22% Similarity=0.234 Sum_probs=64.5
Q ss_pred hhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 006482 286 NEDFAALEQ---HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES- 361 (643)
Q Consensus 286 ~~~faaLqq---hIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~- 361 (643)
.-.|++||+ |.++.+.|.--+++..++ +.+-|++ -++ ..-..-+++..+...|+.|-++++-.+..|.+
T Consensus 254 ~v~~~ales~~sq~~e~~selE~llklker---l~e~l~d-gea---yLaKL~~~l~~~~~~~~~ltqqwed~R~pll~k 326 (521)
T KOG1937|consen 254 LVEYKALESKRSQFEEQNSELEKLLKLKER---LIEALDD-GEA---YLAKLMGKLAELNKQMEELTQQWEDTRQPLLQK 326 (521)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhHHH---HHHhcCC-hHh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 456777774 555555554444443333 2333322 122 22233456777778888888887777766554
Q ss_pred ---hHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHH
Q 006482 362 ---FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQS 413 (643)
Q Consensus 362 ---l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~ 413 (643)
++.+.++--.+... --|-+.|-.++-.+-+++.+--.---+|.++++.+-.
T Consensus 327 kl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~ 380 (521)
T KOG1937|consen 327 KLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPD 380 (521)
T ss_pred HHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCc
Confidence 46666664444444 3456667777766666665321222245555555433
No 436
>PRK00295 hypothetical protein; Provisional
Probab=44.02 E-value=1.9e+02 Score=24.62 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 006482 433 QSTIEALQEEKKMMQSKLRKAS 454 (643)
Q Consensus 433 ~s~i~aLQEEKklLqskLRka~ 454 (643)
+..|+.|+.+-++|..||+.+.
T Consensus 32 q~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 32 QRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777888888888888875
No 437
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=43.90 E-value=3.9e+02 Score=27.75 Aligned_cols=14 Identities=29% Similarity=0.416 Sum_probs=8.5
Q ss_pred HHhhhHHHHHHHHh
Q 006482 321 AAENSSLTDSYNQQ 334 (643)
Q Consensus 321 a~ENsaLt~~yNqQ 334 (643)
-.+-..+...|+++
T Consensus 154 ~~~~~~~~~~Y~~~ 167 (297)
T PF02841_consen 154 LKELDELEKEYEQE 167 (297)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhc
Confidence 33445666777776
No 438
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=43.69 E-value=4.3e+02 Score=30.77 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=14.0
Q ss_pred HHHHHHhhhHHHhhhhhHHHHHHHHHHH
Q 006482 416 SSYKKKISSLEKERQDFQSTIEALQEEK 443 (643)
Q Consensus 416 ~s~~~qlsslekeR~~l~s~i~aLQEEK 443 (643)
+.|+.|++.+..-=-.|...+..-+||-
T Consensus 483 ~NYE~QLs~MSEHLasmNeqL~~Q~eeI 510 (518)
T PF10212_consen 483 RNYEEQLSMMSEHLASMNEQLAKQREEI 510 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777776443333333333333443
No 439
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=43.57 E-value=3.9e+02 Score=27.58 Aligned_cols=104 Identities=14% Similarity=0.287 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHhhhhhhHH-HHHHHHHHHHHhHHHHHHHHhhh
Q 006482 323 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-LVELESFRNEYANVRLECNAAD-ERAKILASEVIGLEEKALRLRSN 400 (643)
Q Consensus 323 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-~~~le~l~aErdaArle~~aA~-ERak~LAaEVV~LEEk~l~LRS~ 400 (643)
++..|.+-+.+-+ ++...+..+.++...| .+.+...-.||-+....+.++- .|.+.+ .....++.-+.+.|..
T Consensus 74 ~~~~ls~~l~~la----ev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~-~~~~~a~~~L~kkr~~ 148 (234)
T cd07664 74 DHTALSRALSQLA----EVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCW-QKWQDAQVTLQKKREA 148 (234)
T ss_pred ccchHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4445555555444 4444444444443333 3456667789999888887765 455554 4556777777777777
Q ss_pred hhhhHH-----HHhhhHHHHHHHHHHhhhHHHhhhh
Q 006482 401 ELKLER-----QLENSQSEISSYKKKISSLEKERQD 431 (643)
Q Consensus 401 eLKler-----ele~l~~E~~s~~~qlsslekeR~~ 431 (643)
.-|+.. -++.+..|+..+++++..+.++-.+
T Consensus 149 ~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~ 184 (234)
T cd07664 149 EAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQ 184 (234)
T ss_pred HHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666632 4667888888899988888776554
No 440
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=43.50 E-value=3.8e+02 Score=27.48 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHH
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS 385 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAa 385 (643)
......++-.++++++.....+|+..+..|+.+-.++..|.+.......
T Consensus 106 ~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~ 154 (237)
T cd07657 106 AKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVV 154 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555667778888888899999999999999999998887755533
No 441
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=43.43 E-value=3.7e+02 Score=27.33 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhHHHHHhhHHHHHHHHHh
Q 006482 550 LVQALSSELAQSSKLKDLNNELSRKLEHQ 578 (643)
Q Consensus 550 l~~aL~~es~~~s~Lk~lN~ELsrKLE~q 578 (643)
.-..|..-..++.+|++.+.+...-|...
T Consensus 218 n~~~l~~~~~k~~~l~~~~~~~~~~L~~a 246 (264)
T PF06008_consen 218 NQKNLEDLEKKKQELSEQQNEVSETLKEA 246 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666666665544
No 442
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]
Probab=43.37 E-value=3.8e+02 Score=30.94 Aligned_cols=141 Identities=22% Similarity=0.328 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006482 289 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 368 (643)
Q Consensus 289 faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErda 368 (643)
|+-++..++|.-.++|.-.+-.+.+.++-+-|..+-..|......|...+.++...-|++++.-..=.+-+-.+...-.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~~i~~~~~~~~~~~~~~~~~r~~g~ll~an~~~i~~~~~~ 339 (564)
T COG1293 260 YADLEKLFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGLKS 339 (564)
T ss_pred cchhhHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34444466666666776666666666666666666666766666666666666666656655422222222111111111
Q ss_pred Hh-------hhhhhHHHHHHHHHHHHHh-HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh
Q 006482 369 VR-------LECNAADERAKILASEVIG-LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ 430 (643)
Q Consensus 369 Ar-------le~~aA~ERak~LAaEVV~-LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~ 430 (643)
++ .++...-+=.+... ++.. .-.+-.+++.....+.++++....++.-|++....+++--.
T Consensus 340 v~~~~~~~~~~i~i~l~~~~~~~-~~~~~~~~~~~klk~~~~~~~~~~~~~~~~~~y~e~~~~~lek~~~ 408 (564)
T COG1293 340 VRLADFYGNEEIKIELDKSKTPS-ENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEG 408 (564)
T ss_pred hehhhhccccceeeccCcCcccc-hhhHHHhhhhhhccCceeehhhhhhhhHHHHHHHHHHHHHHHhccc
Confidence 11 11111111111111 1111 11223344445555666777777777777777777766665
No 443
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=43.28 E-value=5.8e+02 Score=31.91 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHhhHH---HHHHHHHhhhHHHHHHHHHHhhh
Q 006482 536 INALISELALEKEELVQALSSELAQSSK--LKDLNNE---LSRKLEHQTQRLELLTAQNMANE 593 (643)
Q Consensus 536 InaLisEla~Ere~l~~aL~~es~~~s~--Lk~lN~E---LsrKLE~qTQRLELltsq~m~~e 593 (643)
|.-+.+|++.-|+.|..-|-.+.+..-. |+....+ -..-|--...-||-.++|.||..
T Consensus 1213 ~dh~~de~ekdreqLi~kLNcekdeaiq~alkafe~e~ei~E~al~eKsk~Lenqiakg~a~d 1275 (1424)
T KOG4572|consen 1213 IDHDRDEIEKDREQLIIKLNCEKDEAIQGALKAFEDEPEIRECALKEKSKALENQIAKGMAED 1275 (1424)
T ss_pred HHhhHHHHHHHHHHHHHHHhccHHHHHhhhHHHhccCHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 5556777777788887777766655432 2222111 11223334556777778888544
No 444
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=43.26 E-value=1.9e+02 Score=25.02 Aligned_cols=45 Identities=18% Similarity=0.300 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Q 006482 339 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 383 (643)
Q Consensus 339 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~L 383 (643)
++|=.-.++|+.|=..=+..++++..||+..+..-..|..|..+|
T Consensus 10 e~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 10 EHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344556666666666666666655444
No 445
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=42.60 E-value=2.9e+02 Score=25.79 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=8.7
Q ss_pred chhhHHHHHHHHHHHHH
Q 006482 285 HNEDFAALEQHIEDLTQ 301 (643)
Q Consensus 285 ~~~~faaLqqhIeDLT~ 301 (643)
....|+-+=.-|..|..
T Consensus 73 ~G~gF~vvA~eir~LA~ 89 (213)
T PF00015_consen 73 AGRGFAVVADEIRKLAE 89 (213)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhhh
Confidence 34456555555555443
No 446
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=42.59 E-value=4.4e+02 Score=27.98 Aligned_cols=226 Identities=15% Similarity=0.216 Sum_probs=134.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006482 286 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEMEKLQEEIKVQLVELESF 362 (643)
Q Consensus 286 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~---~v~qLk~~mE~Lq~Ei~aQ~~~le~l 362 (643)
.+.+..|++-|++|..-+-.-..-|....++-+.=+.|.+.+-.+|-++.. ....|+.++.+++.-+..-...-..+
T Consensus 71 ~~gi~~l~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l 150 (337)
T cd09234 71 PDTIKNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKRGSSIAHVTELKRELKKYKEAHEKASQSNTEL 150 (337)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 477889999999999999999999999999888888889999999987621 24556666666666544444444444
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHH
Q 006482 363 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 442 (643)
Q Consensus 363 ~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEE 442 (643)
..-++. ...--+.|+...-.|+..+=..+ .+-.. ..+....+++. +..-|+.|..|
T Consensus 151 ~~~~~~-------~~~~l~lL~~~~~~l~~~iPs~~--~~~~~-~~~~~v~~Lr~--------------ll~kl~~lk~e 206 (337)
T cd09234 151 HKAMNL-------HIANLKLLAGPLDELQKKLPSPS--LLDRP-EDEAIEKELKR--------------ILNKVNEMRKQ 206 (337)
T ss_pred HHHHHH-------HHHHHHHHcCcHHHHHhhCCCcc--ccCCc-ccHHHHHHHHH--------------HHHHHHHHHHH
Confidence 333332 11222344444333444432211 01000 11111222222 23345666677
Q ss_pred HHHHHHHHHhhhCCCCCcCCCCCcccccccccccccccccCccccCCCCCcccCCCCCCCCCCCCCCCCccccccccCcc
Q 006482 443 KKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLA 522 (643)
Q Consensus 443 KklLqskLRka~~~gk~~~~~k~~~~~kDASTSTdDLai~d~~~~sSn~e~~~s~s~~~~~~~~~P~~P~~G~~~l~~~~ 522 (643)
++.+...||.... . ||+ .+..|+.. |. .|
T Consensus 207 R~~l~~~Lk~k~~---~-----------------DDI----------~~~ll~~~----------------~~-~~---- 235 (337)
T cd09234 207 RRSLEQQLRDAIH---E-----------------DDI----------TSKLVTTT----------------GG-DM---- 235 (337)
T ss_pred HHHHHHHHHHHhh---c-----------------CCc----------hHHHHHhc----------------ch-hH----
Confidence 7777777777543 1 222 01111111 00 01
Q ss_pred ccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHH
Q 006482 523 VNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLT 586 (643)
Q Consensus 523 vsIp~DQlRmI~nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELlt 586 (643)
-.|=+.+|+..+..-..|.+--..++.|+.+|...-......+....+..++-|..-|+|+.+-
T Consensus 236 e~lf~~eL~k~~~~~~~l~~~~~~Q~~ll~~i~~an~~f~~~r~~~~~~~~~Re~~l~~L~~ay 299 (337)
T cd09234 236 EDLFKEELKKHDQLVNLIEQNLAAQENILKALTEANAKYAPVRKALSETKQKRESTISSLIASY 299 (337)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 1245678888888888888888889999998887777776555554556777777777777654
No 447
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=42.56 E-value=3e+02 Score=26.05 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 006482 432 FQSTIEALQEEKKMMQSK 449 (643)
Q Consensus 432 l~s~i~aLQEEKklLqsk 449 (643)
|+.-+-..|--|..|.-|
T Consensus 84 l~~r~~k~~~dka~lel~ 101 (107)
T PF09304_consen 84 LESRLLKAQKDKAILELK 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHH
Confidence 333333333333333333
No 448
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=42.48 E-value=5.8e+02 Score=29.29 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 006482 288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN 332 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yN 332 (643)
|=.+.++..+.+.++|..-|-.|.+-.+-++.|-.+--.|...|-
T Consensus 117 e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ 161 (499)
T COG4372 117 EREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRR 161 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777788877777777666666666555555554443
No 449
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=41.95 E-value=83 Score=28.49 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=32.6
Q ss_pred HHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482 407 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 452 (643)
Q Consensus 407 ele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRk 452 (643)
+++.+..++..+..|+..++.|-+.++..+++-++|-...-.||=+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5556667777777777777777777777777777777766666543
No 450
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=41.93 E-value=4.2e+02 Score=27.51 Aligned_cols=155 Identities=19% Similarity=0.284 Sum_probs=89.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH------------hhhHHHHHHHHhhHHHHHHHHHHHH
Q 006482 284 KHNEDFAALEQHIEDLTQEKFALQRSLE----ASRALSESLAA------------ENSSLTDSYNQQRSVVNQLKSEMEK 347 (643)
Q Consensus 284 ~~~~~faaLqqhIeDLT~EKfaLqR~L~----~s~~l~esLa~------------ENsaLt~~yNqQ~~~v~qLk~~mE~ 347 (643)
..|+-|.-..+.|++|-.-=-.|.+++. +-++|+..+++ ++.+|.+-+.+-+.+ ...+..
T Consensus 19 E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev----~~~i~~ 94 (234)
T cd07665 19 ESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEV----EEKIEQ 94 (234)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH----HHHHHH
Confidence 3455666666666666544333333332 33455554433 455666666555444 444444
Q ss_pred HHHHHHHH-HHHhhhhHHHHHHHhhhhhhH-HHHHHHHHHHHHhHHHHHHHHhhhhhhhHH-----HHhhhHHHHHHHHH
Q 006482 348 LQEEIKVQ-LVELESFRNEYANVRLECNAA-DERAKILASEVIGLEEKALRLRSNELKLER-----QLENSQSEISSYKK 420 (643)
Q Consensus 348 Lq~Ei~aQ-~~~le~l~aErdaArle~~aA-~ERak~LAaEVV~LEEk~l~LRS~eLKler-----ele~l~~E~~s~~~ 420 (643)
+.+....| .+.+...-.||-+....+..| .+|+++.- -...++..+.+.|...-|+.. .+..+..|+..+++
T Consensus 95 ~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~-~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~ 173 (234)
T cd07665 95 LHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQ-RWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWES 173 (234)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 44443333 344566677888888888655 45666543 344556666666666666643 35567888888899
Q ss_pred HhhhHHHhhhhhH----HHHHHHHHHH
Q 006482 421 KISSLEKERQDFQ----STIEALQEEK 443 (643)
Q Consensus 421 qlsslekeR~~l~----s~i~aLQEEK 443 (643)
++..++++-.++- ..++..++||
T Consensus 174 k~~~a~~~fe~is~~ik~El~rFe~er 200 (234)
T cd07665 174 RVTQYERDFERISATVRKEVIRFEKEK 200 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888877655432 3344455555
No 451
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=41.80 E-value=2.8e+02 Score=25.41 Aligned_cols=66 Identities=24% Similarity=0.282 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHH
Q 006482 340 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ 407 (643)
Q Consensus 340 qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlere 407 (643)
.|+..+.+|++++..-....+.+..+--.+....+ .++|+.++.+.+.+|..+.++-..-.+++.-
T Consensus 5 ~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~--~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~ 70 (171)
T PF03357_consen 5 KLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGN--KERAKIYLKRKKRLEKQLEKLLNQLSNLESV 70 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555444444444444444444444444 7899999999999998888775555554443
No 452
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=41.60 E-value=4.9e+02 Score=28.22 Aligned_cols=130 Identities=18% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006482 287 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 366 (643)
Q Consensus 287 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 366 (643)
.+++.|++-|.+++ |..-+..++++-....++-.++.. +..+.++..+..-+..+++.....-....
T Consensus 1 ~~~~~~~~q~a~~~-----lk~~~~~~qk~l~~~~~l~~~~~k--------~~~~~e~~~~k~~~~~~~~~~~~~~~~~~ 67 (332)
T TIGR01541 1 NQLLLLTQQIADRK-----LKKLNTADEKSLQSRSDEIIALIK--------LEKLLEEAERKALEALKKLAEATASIRAQ 67 (332)
T ss_pred ChHHHHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHh------------hhhhHH
Q 006482 367 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE------------RQDFQS 434 (643)
Q Consensus 367 daArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlssleke------------R~~l~s 434 (643)
..+.+.. --+.-+.+..+..+..--.+|.+++..+.+. ++.++.
T Consensus 68 ~~~~la~------------------------~G~g~~~~~r~~~~~~i~~~~~~q~~~l~~~~~~~~~~s~~~y~~~~~~ 123 (332)
T TIGR01541 68 NKRQLDR------------------------FGLGDKQRERLDARLQIDRTFRKQQRDLNKAMTAKGLAGSDLYKEQLAA 123 (332)
T ss_pred HHHHHHh------------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 006482 435 TIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 435 ~i~aLQEEKklLqskLRka 453 (643)
.-++++++...++....+.
T Consensus 124 l~~~l~~~l~~~~~~y~~~ 142 (332)
T TIGR01541 124 IKAALNEALAELHAYYAAE 142 (332)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 453
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=41.56 E-value=2.3e+02 Score=24.76 Aligned_cols=17 Identities=35% Similarity=0.673 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006482 291 ALEQHIEDLTQEKFALQ 307 (643)
Q Consensus 291 aLqqhIeDLT~EKfaLq 307 (643)
-.+++|++|..|=|.|-
T Consensus 4 Eqe~~i~~L~KENF~LK 20 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLK 20 (75)
T ss_pred HHHHHHHHHHHhhhhHH
Confidence 46889999999998874
No 454
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=41.39 E-value=7e+02 Score=29.95 Aligned_cols=25 Identities=24% Similarity=0.237 Sum_probs=9.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Q 006482 326 SLTDSYNQQRSVVNQLKSEMEKLQE 350 (643)
Q Consensus 326 aLt~~yNqQ~~~v~qLk~~mE~Lq~ 350 (643)
.|..+-+++...+.+.+.+++++++
T Consensus 520 ~li~~l~~~~~~~e~~~~~~~~~~~ 544 (782)
T PRK00409 520 ELIASLEELERELEQKAEEAEALLK 544 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 455
>PRK10780 periplasmic chaperone; Provisional
Probab=41.32 E-value=3.3e+02 Score=26.05 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=29.9
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 006482 325 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 367 (643)
Q Consensus 325 saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErd 367 (643)
..+...|.+-......|+.+...++.+++....++.....++.
T Consensus 32 q~il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q 74 (165)
T PRK10780 32 GSIFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQ 74 (165)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777766666665555553
No 456
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=41.31 E-value=1.3e+02 Score=34.62 Aligned_cols=16 Identities=38% Similarity=0.372 Sum_probs=8.1
Q ss_pred HHHhhhhhhhHHHHhh
Q 006482 395 LRLRSNELKLERQLEN 410 (643)
Q Consensus 395 l~LRS~eLKlerele~ 410 (643)
-++|..--|.|+|++.
T Consensus 312 E~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 312 EQLRVALEKAEKELEA 327 (575)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3455555555555543
No 457
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=41.15 E-value=1.1e+02 Score=24.96 Aligned_cols=33 Identities=30% Similarity=0.354 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 369 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaA 369 (643)
.+.+++.++.+|+.+++......+.++.|.+..
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444445555555443
No 458
>PRK04406 hypothetical protein; Provisional
Probab=40.79 E-value=2.2e+02 Score=24.80 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCC
Q 006482 433 QSTIEALQEEKKMMQSKLRKASGS 456 (643)
Q Consensus 433 ~s~i~aLQEEKklLqskLRka~~~ 456 (643)
+..|+.|+.+-++|..||+.+..+
T Consensus 38 q~~I~~L~~ql~~L~~rl~~~~~~ 61 (75)
T PRK04406 38 QLLITKMQDQMKYVVGKVKNMDSS 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 345677888888899999887643
No 459
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=40.63 E-value=8.2e+02 Score=30.51 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006482 290 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 350 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~ 350 (643)
..|..+++.+.-.++-.+|+-.+..++.--+ .-.+.--.+.=++...+..-|+++|+++-
T Consensus 526 ~~L~~~~e~~dp~~~r~~~~~~~~~~v~~~~-~~v~~E~krilaRk~liE~rKe~~E~~~~ 585 (988)
T KOG2072|consen 526 ESLSKVVEELDPVIIRNSRAKKKEGAVTNYL-KNVDKEHKRILARKSLIEKRKEDLEKQNV 585 (988)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3567777778888888887776665554322 22233334444556666666666665543
No 460
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=40.49 E-value=3e+02 Score=25.44 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHH
Q 006482 292 LEQHIEDLTQEKFALQRSLEASRAL-------SESLAAENSSLTDSYNQQR------SVVNQLKSEMEKLQEEIKVQLVE 358 (643)
Q Consensus 292 LqqhIeDLT~EKfaLqR~L~~s~~l-------~esLa~ENsaLt~~yNqQ~------~~v~qLk~~mE~Lq~Ei~aQ~~~ 358 (643)
|+.+++=-.++.-.....|.+++.- .+.|...-.....++++.+ ..+.....=+++|.+.|..|...
T Consensus 7 L~~vL~l~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~~ 86 (146)
T PRK07720 7 LQKVLELKENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQLL 86 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544444444444444444444433 3344444444444444422 22344556677788888888888
Q ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHH
Q 006482 359 LESFRNEYANVRLECNAADERAKILA 384 (643)
Q Consensus 359 le~l~aErdaArle~~aA~ERak~LA 384 (643)
++.+..+.+.++....+|.-+.|++-
T Consensus 87 v~~~~~~ve~~r~~~~ea~~~~k~~e 112 (146)
T PRK07720 87 VMQAREQMNRKQQDLTEKNIEVKKYE 112 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877777777666653
No 461
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=40.40 E-value=3.3e+02 Score=31.10 Aligned_cols=88 Identities=20% Similarity=0.291 Sum_probs=59.4
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 006482 318 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN--VRLECNAADERAKILASEVIGLEEKAL 395 (643)
Q Consensus 318 esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErda--Arle~~aA~ERak~LAaEVV~LEEk~l 395 (643)
|++..=-+|=.+=|. ...++-+++.|.||+.+.|- -+.+.+||+. +.+..++|.|+=|.+=-|+-.||.--.
T Consensus 356 ESIVRiKqAEA~MFQ---~kAdEARrEAE~LqrI~~aK---~~k~EEEYas~~~kl~l~eaee~r~~~~eelk~~e~s~~ 429 (446)
T PF07227_consen 356 ESIVRIKQAEAKMFQ---LKADEARREAEGLQRIALAK---SEKIEEEYASRYLKLRLNEAEEERKKKFEELKVLENSHR 429 (446)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 444444444455565 45677889999999987654 4555688875 677888888888888777777776666
Q ss_pred HHhhhhhhhHHHHhhh
Q 006482 396 RLRSNELKLERQLENS 411 (643)
Q Consensus 396 ~LRS~eLKlerele~l 411 (643)
....+-.+++.++.+|
T Consensus 430 ~~~~mk~rM~~~I~~L 445 (446)
T PF07227_consen 430 DYDNMKMRMQSEIQDL 445 (446)
T ss_pred ccchHHHHHHHHHHhh
Confidence 5655555555555443
No 462
>PRK00846 hypothetical protein; Provisional
Probab=40.10 E-value=2.7e+02 Score=24.77 Aligned_cols=26 Identities=15% Similarity=-0.037 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhCCC
Q 006482 432 FQSTIEALQEEKKMMQSKLRKASGSG 457 (643)
Q Consensus 432 l~s~i~aLQEEKklLqskLRka~~~g 457 (643)
.+..|+.|++.-++|..||+.+-.+.
T Consensus 39 qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 39 ARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45678889999999999999985443
No 463
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=39.75 E-value=5e+02 Score=27.77 Aligned_cols=69 Identities=26% Similarity=0.295 Sum_probs=56.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006482 285 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 357 (643)
Q Consensus 285 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~ 357 (643)
..+.+++|.+-..|+-.+...++|.+...+.-++.|..|...+....|. ....++.+|.|=+|++.|--
T Consensus 20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k----~~~~k~KLE~LCRELQk~Nk 88 (309)
T PF09728_consen 20 PEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSK----AILAKSKLESLCRELQKQNK 88 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999888774 44566777777666666553
No 464
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=39.54 E-value=6e+02 Score=28.61 Aligned_cols=98 Identities=22% Similarity=0.352 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 006482 291 ALEQHIEDLTQEKFALQ---RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 367 (643)
Q Consensus 291 aLqqhIeDLT~EKfaLq---R~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErd 367 (643)
-||..|..+|+.--.|- -.++.-|.=+++|-.-|+.|...-=+-+++...-|.++-+|+.=|.-..-+...+..-.+
T Consensus 72 llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 72 LLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLD 151 (401)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 47777888876544332 234444555677888888887766666667666677766666666555556666777788
Q ss_pred HHhhhhhhHHHHHHHHHHHHH
Q 006482 368 NVRLECNAADERAKILASEVI 388 (643)
Q Consensus 368 aArle~~aA~ERak~LAaEVV 388 (643)
++.++|.+-.|+++.|--|..
T Consensus 152 ~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 152 ALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHHHhHhHHHHHHHHHHHH
Confidence 889999999999999876654
No 465
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=39.54 E-value=3e+02 Score=25.16 Aligned_cols=49 Identities=22% Similarity=0.393 Sum_probs=23.8
Q ss_pred HHHHHHHh-hhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHH
Q 006482 391 EEKALRLR-SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 446 (643)
Q Consensus 391 EEk~l~LR-S~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklL 446 (643)
|.||-.|| |=|-|-++.+.+|..++..+.+.+.. |+.-+++..+||+-|
T Consensus 33 E~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~-------L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 33 ETKVKALKKSYEARWEKKVDELENENKALKRENEQ-------LKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 44444443 33444555555555555444444443 344455555555544
No 466
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=39.15 E-value=4.3e+02 Score=28.99 Aligned_cols=64 Identities=20% Similarity=0.217 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhHHHHHHHHHHHHHHHHH
Q 006482 289 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEI 352 (643)
Q Consensus 289 faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt-~~yNqQ~~~v~qLk~~mE~Lq~Ei 352 (643)
.+.|+.++..|++|--.|++...+.++--|.+..+-.++- +-|-.=..++|+=|.+|..|++.+
T Consensus 139 ~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L 203 (342)
T PF06632_consen 139 NSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLL 203 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445555555555555555555555555555554444332 233344555555566665555543
No 467
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=39.14 E-value=4.7e+02 Score=27.27 Aligned_cols=81 Identities=27% Similarity=0.353 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHH--------------HHhhhH-------HHHHHHHHHhhhHHHhhhh
Q 006482 373 CNAADERAKILASEVIGLEEKALRLRSNELKLER--------------QLENSQ-------SEISSYKKKISSLEKERQD 431 (643)
Q Consensus 373 ~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKler--------------ele~l~-------~E~~s~~~qlsslekeR~~ 431 (643)
...|.|||..=.+.++.||+....+.++---++. ++..+. ...+...|.|..|+|+|-+
T Consensus 97 LE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~Dd 176 (205)
T KOG1003|consen 97 LERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDD 176 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHH
Confidence 3557788888888899999888766554322222 222222 2233456777788888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 006482 432 FQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 432 l~s~i~aLQEEKklLqskLRka 453 (643)
|+..+..+.++-+-++.-|=.+
T Consensus 177 lE~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 177 LEEKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 8888888887766666655444
No 468
>PRK11546 zraP zinc resistance protein; Provisional
Probab=39.05 E-value=1.6e+02 Score=28.75 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 398 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LR 398 (643)
+-.+++.-...++.+...-+-.+-+-+.|+.+-...-+.-.++.+.|+.||..|-.++.++|
T Consensus 48 QQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 48 QQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
No 469
>PRK14160 heat shock protein GrpE; Provisional
Probab=38.70 E-value=1.6e+02 Score=30.19 Aligned_cols=49 Identities=31% Similarity=0.253 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 006482 338 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 386 (643)
Q Consensus 338 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE 386 (643)
+.+|+.+++.|+.+++...-.+--+.+|++|+|-+...-.+.++..|.+
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e 111 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACE 111 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444445566666665555555555544443
No 470
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.60 E-value=4.9e+02 Score=27.37 Aligned_cols=47 Identities=28% Similarity=0.345 Sum_probs=32.9
Q ss_pred hhhhhHHHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHH-----HHHHHHHH
Q 006482 400 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ-----EEKKMMQS 448 (643)
Q Consensus 400 ~eLKlerele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQ-----EEKklLqs 448 (643)
.+| .++++.+.++-.++.+++.-..|.=+-+-.+++.+| ||+-++-.
T Consensus 153 ~el--~keleel~~~~~s~~~klelrRkqf~~lm~~~~elQ~amedeedt~v~e 204 (222)
T KOG3215|consen 153 NEL--KKELEELDDLNNSTETKLELRRKQFKYLMVSTEELQCAMEDEEDTVVEE 204 (222)
T ss_pred HHH--HHHHHHHHHHhhhhHHHHHHHhhcchHHHhhHHHHHhhhhhhhhhHHHh
Confidence 455 477788888888888888866555555666777777 56655544
No 471
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=38.55 E-value=1.7e+02 Score=27.00 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHHHHHH
Q 006482 535 NINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 587 (643)
Q Consensus 535 nInaLisEla~Ere~l~~aL~~es~~~s~Lk~lN~ELsrKLE~qTQRLELlts 587 (643)
+|-+.|.+|+..-..+..-|..-...+.+|-++|++|+-..+.-..||.-...
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666777777777777777777777777778887777777776777766555
No 472
>PRK14151 heat shock protein GrpE; Provisional
Probab=38.45 E-value=4.1e+02 Score=26.44 Aligned_cols=49 Identities=20% Similarity=0.242 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 006482 338 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 386 (643)
Q Consensus 338 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE 386 (643)
+..|+.+++.|+.+++...-.+--+.+|.+|+|-+...-.+.++..|.+
T Consensus 22 ~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~ 70 (176)
T PRK14151 22 GDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALE 70 (176)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555444444444555677777766665555555555544
No 473
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=38.36 E-value=2.5e+02 Score=24.66 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=15.5
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006482 372 ECNAADERAKILASEVIGLEEKALRL 397 (643)
Q Consensus 372 e~~aA~ERak~LAaEVV~LEEk~l~L 397 (643)
++.+..++++.+..++..||+++..+
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666655543
No 474
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=38.30 E-value=3.4e+02 Score=33.45 Aligned_cols=49 Identities=27% Similarity=0.327 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhhhHHHhhhhhHHH-HHHHH-HHHHHHHHHHHhhhCCCCC
Q 006482 411 SQSEISSYKKKISSLEKERQDFQST-IEALQ-EEKKMMQSKLRKASGSGKS 459 (643)
Q Consensus 411 l~~E~~s~~~qlsslekeR~~l~s~-i~aLQ-EEKklLqskLRka~~~gk~ 459 (643)
+..|++.-++.-+-..++|..++-. +-+-| +|..+++.+|+++.+.|.+
T Consensus 257 ~~eEak~kkKekekek~er~KaeGklLTakQK~~~a~aea~l~~ll~sg~~ 307 (1064)
T KOG1144|consen 257 QEEEAKEKKKEKEKEKKERKKAEGKLLTAKQKEEAALAEAFLKQLLASGGG 307 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchHhhHHHHHHHHHHHHHHHhcCCC
Confidence 3444444455555555666655433 33445 7888889999999888865
No 475
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=38.29 E-value=5.4e+02 Score=27.71 Aligned_cols=122 Identities=16% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 006482 289 FAALEQH-IEDLTQEKF----ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 363 (643)
Q Consensus 289 faaLqqh-IeDLT~EKf----aLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~ 363 (643)
+..|++. +.+||..++ +....|++++=-+.-|-.--..+. .+=+-...-.....+.+...+.+.....+++...
T Consensus 135 IqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~-Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~ 213 (269)
T PF05278_consen 135 IQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEIL-EAKEIYDQHETREEEKEEKDRKLELKKEELEELE 213 (269)
T ss_pred HHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHH
Q 006482 364 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 418 (643)
Q Consensus 364 aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~ 418 (643)
+|.+.+..+..++.+|-..++.-+..||.+-.++ .+.+.-+...++.+
T Consensus 214 EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l-------~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 214 EELKQKEKEVKEIKERITEMKGRLGELEMESTRL-------SKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
No 476
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=38.03 E-value=5.4e+02 Score=28.28 Aligned_cols=61 Identities=10% Similarity=0.172 Sum_probs=30.6
Q ss_pred HHHhhhhhhhHHHHhhhHHHHHHHHHHhhhH----HHhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 006482 395 LRLRSNELKLERQLENSQSEISSYKKKISSL----EKERQDFQSTIEALQEEKKMMQSKLRKASG 455 (643)
Q Consensus 395 l~LRS~eLKlerele~l~~E~~s~~~qlssl----ekeR~~l~s~i~aLQEEKklLqskLRka~~ 455 (643)
.+|-....=.+.+++.++..+...++.+... .+.+.-+.......|.+.+.++.++.++-.
T Consensus 140 ~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l 204 (352)
T COG1566 140 AELAQRGVVSREELDRARAALQAAEAALAAAQAAQKQNLALLESEVSGAQAQVASAEAALDQAKL 204 (352)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHH
Confidence 3343333444555556555555555555333 223333444445555555666666666644
No 477
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=37.99 E-value=5.6e+02 Score=27.82 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006482 308 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 368 (643)
Q Consensus 308 R~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErda 368 (643)
--.+++++=+-.+|+..+.|.++++.-.. -+|...+.++++.|.+|.-+++.++.+++.
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms~--~ql~~~~~k~~~si~~q~~~i~~l~~~i~~ 99 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEMSS--TQLRANIAKAEESIAAQKRAIEDLQKKIDS 99 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777778888888887765432 244444444444444444444444444443
No 478
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=37.80 E-value=3.5e+02 Score=29.39 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=18.0
Q ss_pred HHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006482 418 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 452 (643)
Q Consensus 418 ~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRk 452 (643)
++-++.-|+.||..|-.+-+-+ +=+.+++-++|+
T Consensus 121 leeKkrkieeeR~smDlts~~~-e~~~l~~rk~rr 154 (291)
T KOG4466|consen 121 LEEKKRKIEEERLSMDLTSDSM-ESKPLYTRKLRR 154 (291)
T ss_pred HHHHHHHHHHHHhhhhhccccc-ccchHHhhhccc
Confidence 3444445556777666554431 334555555665
No 479
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.79 E-value=5.4e+02 Score=30.80 Aligned_cols=160 Identities=27% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006482 290 AALEQHIEDLTQEKFALQRSLEASRALSE--------------SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 355 (643)
Q Consensus 290 aaLqqhIeDLT~EKfaLqR~L~~s~~l~e--------------sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ 355 (643)
++|.|-|.+..-|=-.|.++|--....-. .|....+-|..+||+...+..++..++++|-.+|..+
T Consensus 64 ~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~ 143 (660)
T KOG4302|consen 64 ARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP 143 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q ss_pred ---------------HHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhh-hhHHHHhhhHHHHHHHH
Q 006482 356 ---------------LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL-KLERQLENSQSEISSYK 419 (643)
Q Consensus 356 ---------------~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eL-Klerele~l~~E~~s~~ 419 (643)
+-.|+.|++...-+|.+...=-+-...+-.+|..|=+-+--..++.+ ..+.-|...-.+..
T Consensus 144 ~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~--- 220 (660)
T KOG4302|consen 144 EDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQS--- 220 (660)
T ss_pred ccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCccc---
Q ss_pred HHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 006482 420 KKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 454 (643)
Q Consensus 420 ~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~ 454 (643)
+-++-=..+|-+ -+|+.|+++|+-.-.+|+...
T Consensus 221 ~~is~etl~~L~--~~v~~l~~~k~qr~~kl~~l~ 253 (660)
T KOG4302|consen 221 RSISDETLDRLD--KMVKKLKEEKKQRLQKLQDLR 253 (660)
T ss_pred ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
No 480
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=37.66 E-value=59 Score=31.64 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH
Q 006482 340 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 381 (643)
Q Consensus 340 qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak 381 (643)
+|..+--+|++||..-..+++.+.-|+||.+..|.++.--+.
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455555566666666667778888888888888877766655
No 481
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=37.50 E-value=1.5e+02 Score=26.96 Aligned_cols=40 Identities=10% Similarity=0.320 Sum_probs=24.1
Q ss_pred HHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006482 414 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 453 (643)
Q Consensus 414 E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka 453 (643)
++...++++..++.+...|...|+.|+.....+..+.|+.
T Consensus 35 q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~ 74 (105)
T PRK00888 35 QVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNE 74 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHH
Confidence 3344444455555555566667777776566777777765
No 482
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.44 E-value=4.2e+02 Score=26.17 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=24.4
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 006482 281 YSTKHNEDFAALEQHIEDLTQEKFA----LQRSLEASRALSESLA 321 (643)
Q Consensus 281 ~s~~~~~~faaLqqhIeDLT~EKfa----LqR~L~~s~~l~esLa 321 (643)
--+..+.+|..+...|+.|..-=-. .+|-+.+.++++..++
T Consensus 8 ~~~~~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~ 52 (200)
T cd07624 8 LLKNRSPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELK 52 (200)
T ss_pred hhcCCCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677899999888887643222 3444445555554443
No 483
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.42 E-value=7.6e+02 Score=29.20 Aligned_cols=95 Identities=14% Similarity=0.089 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHhhhhH
Q 006482 288 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK----SEMEKLQEEIKVQLVELESFR 363 (643)
Q Consensus 288 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk----~~mE~Lq~Ei~aQ~~~le~l~ 363 (643)
+|.+|.-.|..+++-=-.|-+. + | .+-+.+|+--|+..||+...+.+-++ ..++.++- |+.-+
T Consensus 209 ~~erlk~~~~s~~e~l~kl~~E-q--Q--lq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek----~r~~l---- 275 (613)
T KOG0992|consen 209 LKERLKIVEESRLESLGKLNSE-Q--Q--LQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEK----QRSRL---- 275 (613)
T ss_pred HHHHHHHHHHHHHHHHHhhhHH-H--H--HHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH----HHHHH----
Confidence 4455554444444332223333 1 1 55666677777777777666555444 11111111 11111
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 006482 364 NEYANVRLECNAADERAKILASEVIGLEEKALRL 397 (643)
Q Consensus 364 aErdaArle~~aA~ERak~LAaEVV~LEEk~l~L 397 (643)
|-+.+. +..+-.+|.+.+-+=|-.+++..++|
T Consensus 276 -ee~~~~-e~~e~rk~v~k~~~l~q~~~~~~~eL 307 (613)
T KOG0992|consen 276 -EEQVAE-ETTEKRKAVKKRDDLIQSRKQVSFEL 307 (613)
T ss_pred -HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222 55566667777777777777666655
No 484
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=37.40 E-value=4.1e+02 Score=26.13 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=40.2
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 006482 325 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 371 (643)
Q Consensus 325 saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArl 371 (643)
+.+-++|-+-..++.+...+|-++++.+..-..++.+-+.|.|.|--
T Consensus 4 e~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~ 50 (136)
T PF11570_consen 4 EVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANK 50 (136)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45678888889999999999999999998888888888888888643
No 485
>PRK14147 heat shock protein GrpE; Provisional
Probab=37.18 E-value=1.1e+02 Score=30.30 Aligned_cols=49 Identities=29% Similarity=0.336 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 006482 338 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 386 (643)
Q Consensus 338 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE 386 (643)
...|+.+++.|+.+++...-.+--+.+|.+|+|-+...-.++++..|.+
T Consensus 20 ~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~ 68 (172)
T PRK14147 20 TDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANE 68 (172)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666655554555566778888877666666666666654
No 486
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=37.00 E-value=4.9e+02 Score=26.83 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=6.7
Q ss_pred HHHHHHhHHHHHHHH
Q 006482 383 LASEVIGLEEKALRL 397 (643)
Q Consensus 383 LAaEVV~LEEk~l~L 397 (643)
.+.+...|..+|-.+
T Consensus 80 ~~~~~~~l~~~i~~l 94 (196)
T PF15272_consen 80 SSKQSEDLQSRISNL 94 (196)
T ss_pred HhHhhHHHHHHHHHH
Confidence 444444444444443
No 487
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=36.89 E-value=1.5e+02 Score=24.80 Aligned_cols=45 Identities=31% Similarity=0.335 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Q 006482 337 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 386 (643)
Q Consensus 337 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaE 386 (643)
.+.++..++.+++++++.+..+...++.|... -...+|-..+|.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~-----l~~~~rIe~~Ar~ 69 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAE-----LSRHERIEKIAKK 69 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCHHHHHHHHHH
Confidence 34566777777777777777777777777765 2336666666654
No 488
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=36.78 E-value=2.5e+02 Score=27.84 Aligned_cols=11 Identities=9% Similarity=0.247 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 006482 338 VNQLKSEMEKL 348 (643)
Q Consensus 338 v~qLk~~mE~L 348 (643)
+..++.+++++
T Consensus 80 ~~~~~~~~~r~ 90 (322)
T TIGR01730 80 LELAQRSFERA 90 (322)
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 489
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=36.66 E-value=84 Score=28.38 Aligned_cols=20 Identities=40% Similarity=0.434 Sum_probs=15.0
Q ss_pred HHHHHHHhHHHHHHHHhhhh
Q 006482 382 ILASEVIGLEEKALRLRSNE 401 (643)
Q Consensus 382 ~LAaEVV~LEEk~l~LRS~e 401 (643)
..|.|+-+|||++.+.|-+-
T Consensus 2 ~V~~eId~lEekl~~cr~~l 21 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRL 21 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHH
Confidence 35788889999988776543
No 490
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=36.65 E-value=3.7e+02 Score=25.39 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHH
Q 006482 340 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK 419 (643)
Q Consensus 340 qLk~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~ 419 (643)
+--+++..++.-+..-...++.+..+.++.++.+-.+.-+.+..+.+ =|.+. --++..+.+-+.|++||+
T Consensus 31 ~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~---R~~~~-------q~lq~~I~Ek~~eLERl~ 100 (120)
T PF14931_consen 31 EFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQ---REAQQ-------QQLQALIAEKKMELERLR 100 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh---HHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555666666666666666665555544321 11111 112233334445556666
Q ss_pred HHhhhHHHhhhh
Q 006482 420 KKISSLEKERQD 431 (643)
Q Consensus 420 ~qlsslekeR~~ 431 (643)
.+.++|.|--++
T Consensus 101 ~E~~sL~kve~e 112 (120)
T PF14931_consen 101 SEYESLQKVEQE 112 (120)
T ss_pred HHHHHHHHHHHH
Confidence 666665443333
No 491
>PRK10869 recombination and repair protein; Provisional
Probab=36.54 E-value=7e+02 Score=28.55 Aligned_cols=12 Identities=17% Similarity=0.058 Sum_probs=6.7
Q ss_pred CCccccCCCCcc
Q 006482 74 SNAIALGNGHSF 85 (643)
Q Consensus 74 sn~~~~~~g~s~ 85 (643)
-|.|+-.||.|-
T Consensus 24 lnvitGetGaGK 35 (553)
T PRK10869 24 MTVITGETGAGK 35 (553)
T ss_pred cEEEECCCCCCh
Confidence 356665566554
No 492
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=36.51 E-value=3.1e+02 Score=24.38 Aligned_cols=21 Identities=24% Similarity=0.098 Sum_probs=9.5
Q ss_pred HHHHhhhhHHHHHHHhhhhhh
Q 006482 355 QLVELESFRNEYANVRLECNA 375 (643)
Q Consensus 355 Q~~~le~l~aErdaArle~~a 375 (643)
++..++.-..|-..+.-++..
T Consensus 21 ~~~~l~~~~~E~~~v~~EL~~ 41 (105)
T cd00632 21 QRQKVEAQLNENKKALEELEK 41 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 344444444454444444443
No 493
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=36.49 E-value=5.4e+02 Score=27.19 Aligned_cols=126 Identities=17% Similarity=0.284 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh--------------hHHH------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 006482 305 ALQRSLEASRALSESLAAENSSLTDSYNQQ--------------RSVV------NQLKSEMEKLQEEIKVQLVELESFRN 364 (643)
Q Consensus 305 aLqR~L~~s~~l~esLa~ENsaLt~~yNqQ--------------~~~v------~qLk~~mE~Lq~Ei~aQ~~~le~l~a 364 (643)
.|.+++..-+.-+|.+|.-+..|.+.-+.- .+.+ ...++.++++|.--..++-.++.-+.
T Consensus 61 TL~~sw~~~~~e~E~ia~~H~~l~~~L~~E~~e~ir~~QKe~~hk~~~~g~ke~K~~e~~f~kaqK~w~k~~kk~~~sKk 140 (258)
T cd07681 61 TLEKAWHAFLTAAERLSEIHLELRENLVGEDSEKVRAWQKEAFHKQMIGGFRESKEAEEGFRKAQKPWVKKLKEVESSKK 140 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444455555555566666555555443220 1111 23335555666655556666666666
Q ss_pred HHHHHhhhhhhHHH--HH-H----HHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHhhhHHHhhh----hhH
Q 006482 365 EYANVRLECNAADE--RA-K----ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ----DFQ 433 (643)
Q Consensus 365 ErdaArle~~aA~E--Ra-k----~LAaEVV~LEEk~l~LRS~eLKlerele~l~~E~~s~~~qlsslekeR~----~l~ 433 (643)
-|..+......|.. .. + ....|+--|.+|+. +--+.+..--..|+..|..|++-|. ++.
T Consensus 141 ~Y~~~ck~e~~a~~~e~~~k~~~~~~~~q~~K~~~kle----------K~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~ 210 (258)
T cd07681 141 GYHAARKDERTAQTRETHAKADSTVSQEQLRKLQDRVE----------KCTQEAEKAKEQYEKALEELNRYNPRYMEDME 210 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66666433333321 11 1 11123333333333 3333333333567777777776664 577
Q ss_pred HHHHHHH
Q 006482 434 STIEALQ 440 (643)
Q Consensus 434 s~i~aLQ 440 (643)
.+.+.+|
T Consensus 211 ~~~d~~Q 217 (258)
T cd07681 211 QAFEICQ 217 (258)
T ss_pred HHHHHHH
Confidence 8888888
No 494
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=36.36 E-value=4.9e+02 Score=26.82 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=59.6
Q ss_pred ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHH------------H
Q 006482 275 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL------------K 342 (643)
Q Consensus 275 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qL------------k 342 (643)
...|-+....=..++.-|++.++++.+++-.++-++++.+..-.++-.....-.+.|.+.-..+... .
T Consensus 73 a~~H~~ia~~L~~~~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~ 152 (242)
T cd07671 73 GNSHIQLAGMLREELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNP 152 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 3456665555555566678888888888888888888888877777777777777776554443321 1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 006482 343 SEMEKLQEEIKVQLVELESFRNEYANVRLECN 374 (643)
Q Consensus 343 ~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~ 374 (643)
.++|.++.-+..-...++.-+.+|..+.-..+
T Consensus 153 keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~ 184 (242)
T cd07671 153 KQSEKSQNKAKQCRDAATEAERVYKQNIEQLD 184 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333444555555444333
No 495
>PRK09343 prefoldin subunit beta; Provisional
Probab=36.35 E-value=3.5e+02 Score=25.04 Aligned_cols=95 Identities=18% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh------------------HHHHHHHhhhhhhHH
Q 006482 316 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF------------------RNEYANVRLECNAAD 377 (643)
Q Consensus 316 l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l------------------~aErdaArle~~aA~ 377 (643)
+++.|-.+-......|++....+..+...+.+|+.++.--..+++.| +..++.|+ ..-.
T Consensus 1 ~~~~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~---~~l~ 77 (121)
T PRK09343 1 MAENIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVE---KELK 77 (121)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHH---HHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhhHHHHhhhHH
Q 006482 378 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQS 413 (643)
Q Consensus 378 ERak~LAaEVV~LEEk~l~LRS~eLKlerele~l~~ 413 (643)
+|...+..++-.||.+...++..--++++++..+..
T Consensus 78 ~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 78 ERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=36.24 E-value=6.1e+02 Score=27.75 Aligned_cols=190 Identities=17% Similarity=0.128 Sum_probs=0.0
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHhhHHHHHHHHHHHHHHH
Q 006482 277 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT------DSYNQQRSVVNQLKSEMEKLQE 350 (643)
Q Consensus 277 ~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt------~~yNqQ~~~v~qLk~~mE~Lq~ 350 (643)
.|++... +......+|+.-++...=...++....+.+....+...-.... +..|-. .|..|+.+..+++.
T Consensus 224 ~~~l~~~--~~~~~~~~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~--~i~~Lr~~~~~~~~ 299 (458)
T COG3206 224 QHGLTDA--ARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESP--TIQDLRQQYAQVRQ 299 (458)
T ss_pred hcCCccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccH--HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhh-----HHHHHHHhhhhhhHHHHHHHHHHHHHh---HHHHHHHHhhhhhhhHHHHhhhHHHHHHHHHHh
Q 006482 351 EIKVQLVELESF-----RNEYANVRLECNAADERAKILASEVIG---LEEKALRLRSNELKLERQLENSQSEISSYKKKI 422 (643)
Q Consensus 351 Ei~aQ~~~le~l-----~aErdaArle~~aA~ERak~LAaEVV~---LEEk~l~LRS~eLKlerele~l~~E~~s~~~ql 422 (643)
+++.-...+... ..+...+-.+..-+.|=.+.++..... |+.+...|+.+.-.+++++..+-.-.-.+++=-
T Consensus 300 ~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~ 379 (458)
T COG3206 300 QIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELE 379 (458)
T ss_pred HHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHH
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCccccc
Q 006482 423 SSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTV 470 (643)
Q Consensus 423 sslekeR~~l~s~i~aLQEEKklLqskLRka~~~gk~~~~~k~~~~~k 470 (643)
..++.-|.-+.+.+.+.||-+..--...-++-.--.+.++..|..+++
T Consensus 380 Re~~~~r~~ye~lL~r~qe~~~~~~~~~~n~rvIs~A~~P~~p~~Pk~ 427 (458)
T COG3206 380 REAEAARSLYETLLQRYQELSIQEASPIGNARVISPAVPPLSPSKPKK 427 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCceeEeccccCCCCCCCChH
No 497
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=36.07 E-value=6.8e+02 Score=28.20 Aligned_cols=253 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred cccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH-H
Q 006482 274 IENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSL------EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM-E 346 (643)
Q Consensus 274 ~e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L------~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~m-E 346 (643)
++..-..+.++...-.+.|+.-|+++..|=-.+.+|- .++.+-+..+..--..|.-+|=+-.....+|.+++ +
T Consensus 131 l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~~l~aG~~~~ld~~~~~er~~~i~~la~~L~~DFr~V~~~~r~l~r~lr~ 210 (478)
T PF11855_consen 131 LRQLAEGTDPDPERRIAELEREIAEIDAEIDRLEAGDVPVLDDTQARERARQILQLARELPADFRRVEDNFRELDRALRE 210 (478)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhh------------------hhhhHHHHHHHHHH--HHHhHHHHHH-HHhhhhhhhH
Q 006482 347 KLQEEIKVQLVELESFRNEYANVRL------------------ECNAADERAKILAS--EVIGLEEKAL-RLRSNELKLE 405 (643)
Q Consensus 347 ~Lq~Ei~aQ~~~le~l~aErdaArl------------------e~~aA~ERak~LAa--EVV~LEEk~l-~LRS~eLKle 405 (643)
++...-......|+.+-.+||+... ...+-++.-..+.. .+-.|+..-+ .||.-.-.+.
T Consensus 211 ~i~~~~~~~G~vL~~~~~~~d~l~~SdqGrsF~aF~~~L~d~~~~~~l~~~l~~Vl~~~~~~~L~~~~r~~Lr~l~~~l~ 290 (478)
T PF11855_consen 211 RIIDWDGSRGEVLDEYFDGYDALAESDQGRSFRAFWDFLLDPERQAELDELLDQVLARPFARDLDPDQRRFLRRLHRRLL 290 (478)
T ss_pred HHhhccccHHHHHHHHHHhHHHHhcCCCCCcHHHHHHHHcCHHHHHHHHHHHHHHHcCcccccCCHHHHHHHHHHHHHHH
Q ss_pred HHHhhhHHHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCcccccccccccccccccCcc
Q 006482 406 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTT 485 (643)
Q Consensus 406 rele~l~~E~~s~~~qlsslekeR~~l~s~i~aLQEEKklLqskLRka~~~gk~~~~~k~~~~~kDASTSTdDLai~d~~ 485 (643)
.+.+....-+.+|-++|...=+++.- .|-+.+...||.+-..--......++ ....+...++ .+
T Consensus 291 ~~~~~V~~~~~~~s~~Lrrfv~~~~~---------~e~R~v~~lL~~~~~~A~~l~~~~~~---~~~~~~~~~~----~~ 354 (478)
T PF11855_consen 291 EAGEEVQRTRRRLSRSLRRFVRSQAW---------LENRRVRRLLREIEAAALALRDAVPP---TQARLPLDDL----AP 354 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCccccc----cc
Q ss_pred ccCCCCCcccCCCCCCCCCCCCCCCCccccc---cccCccccchhhHHHHHhhHHHHHHH
Q 006482 486 LDNSNQDTHDDASLPRIDASGSTLLPESGRL---ALEGLAVNIPHDQMRMIHNINALISE 542 (643)
Q Consensus 486 ~~sSn~e~~~s~s~~~~~~~~~P~~P~~G~~---~l~~~~vsIp~DQlRmI~nInaLisE 542 (643)
.....-+-..-+.+....+...|..+..+.+ .++.-..-...|--+|.++|+.++.+
T Consensus 355 ~~~~~~~r~~~~~p~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~iD~~~L~~~v~~~l~~ 414 (478)
T PF11855_consen 355 DIELPLERPLLRDPAEPAVPPLPLEAEEADIDLEDLAALFRQSGIDRAELRENVRAALAE 414 (478)
T ss_pred cccCCCcccccCCCccccCCCcccCCCCCccchhhHHHHHhcCCCCHHHHHHHHHHHHhh
No 498
>PRK13874 conjugal transfer protein TrbJ; Provisional
Probab=35.95 E-value=5.2e+02 Score=26.81 Aligned_cols=103 Identities=17% Similarity=0.094 Sum_probs=0.0
Q ss_pred ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHH------------
Q 006482 275 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK------------ 342 (643)
Q Consensus 275 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk------------ 342 (643)
..|.+|.++..+.+..+-.+--=.-|.. .++-+|.-+-.+++.+.++..+|.+-..+-.+..++|+
T Consensus 111 ~~yp~~~~~~s~~~~~a~a~~~w~~s~~--~~~daL~~~~~~~~n~~~d~~~L~~L~~~SqsA~G~lqA~Qa~NQllalq 188 (230)
T PRK13874 111 RLYPEASATVSDAQLVADARERWQNTVG--GLQDALRVQAGVVGNLDTDRSQLSALVGQSQSATGALQAAQAGNQLLALQ 188 (230)
T ss_pred HHCcccccCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHhHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHH
Q 006482 343 -SEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER 379 (643)
Q Consensus 343 -~~mE~Lq~Ei~aQ~~~le~l~aErdaArle~~aA~ER 379 (643)
.+|-+|+.-+.+|.-+-+.-.+++.++.-+..++..|
T Consensus 189 ~~Ql~qL~~llaaq~ra~A~~~A~~a~~~~~~r~~~~~ 226 (230)
T PRK13874 189 AQQLADLQALMAAQGRAQALEAARQAAAEEQGREQRRR 226 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 499
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.87 E-value=1.2e+02 Score=24.60 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006482 285 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAEN 324 (643)
Q Consensus 285 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~esLa~EN 324 (643)
+...+..||..++.|..|--.|...+..-....+.|-.+|
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 500
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=35.84 E-value=3.2e+02 Score=24.79 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006482 296 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 353 (643)
Q Consensus 296 IeDLT~EKfaLqR~L~~s~~l~esLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 353 (643)
|+.|..|.-+..-.++++..+.+.|-+.-..-..-.-++...-.+++.+.++.++.|+
T Consensus 27 i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik 84 (110)
T PF10828_consen 27 IDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIK 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!