Query 006484
Match_columns 643
No_of_seqs 443 out of 2482
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 02:18:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o20_A Gamma-glutamyl phosphat 100.0 4E-73 1.4E-77 615.7 39.5 354 289-643 12-371 (427)
2 2wme_A BADH, betaine aldehyde 100.0 1.1E-71 3.7E-76 611.8 37.0 351 268-643 27-436 (490)
3 4ghk_A Gamma-glutamyl phosphat 100.0 3.5E-71 1.2E-75 603.4 35.9 353 290-643 25-388 (444)
4 1vlu_A Gamma-glutamyl phosphat 100.0 4.6E-69 1.6E-73 588.9 38.4 352 290-643 13-389 (468)
5 3ek1_A Aldehyde dehydrogenase; 100.0 5.4E-69 1.9E-73 592.9 36.4 351 268-643 53-455 (504)
6 3ifg_A Succinate-semialdehyde 100.0 9.7E-69 3.3E-73 589.3 36.6 350 269-643 34-437 (484)
7 3prl_A NADP-dependent glyceral 100.0 1.7E-68 5.8E-73 589.7 37.8 353 268-643 32-435 (505)
8 3ros_A NAD-dependent aldehyde 100.0 2.8E-68 9.6E-73 585.0 37.0 348 269-643 10-411 (484)
9 3rh9_A Succinate-semialdehyde 100.0 1.5E-68 5.1E-73 589.7 33.8 350 268-643 32-437 (506)
10 4f3x_A Putative aldehyde dehyd 100.0 5.3E-68 1.8E-72 584.8 37.1 352 268-643 45-450 (498)
11 4e4g_A Methylmalonate-semialde 100.0 2E-68 6.8E-73 590.7 33.7 351 268-643 47-455 (521)
12 3ed6_A Betaine aldehyde dehydr 100.0 3E-68 1E-72 589.1 34.5 351 268-643 53-463 (520)
13 1a4s_A ALDH, betaine aldehyde 100.0 1E-67 3.5E-72 583.8 38.1 349 268-643 41-449 (503)
14 3pqa_A Lactaldehyde dehydrogen 100.0 4.1E-68 1.4E-72 584.0 34.8 352 268-643 17-416 (486)
15 3r31_A BADH, betaine aldehyde 100.0 5.9E-68 2E-72 586.4 35.8 347 268-643 35-441 (517)
16 1wnd_A Putative betaine aldehy 100.0 1.4E-67 4.9E-72 581.0 38.2 352 268-643 43-448 (495)
17 1o04_A Aldehyde dehydrogenase, 100.0 6.9E-68 2.4E-72 584.2 35.7 349 270-643 42-448 (500)
18 3k2w_A Betaine-aldehyde dehydr 100.0 1.2E-67 4.2E-72 582.9 37.0 350 269-643 34-441 (497)
19 3b4w_A Aldehyde dehydrogenase; 100.0 1.2E-67 4.2E-72 582.0 36.8 351 268-643 29-436 (495)
20 1bxs_A Aldehyde dehydrogenase; 100.0 1.1E-67 3.9E-72 582.6 36.0 350 269-643 42-449 (501)
21 3iwj_A Putative aminoaldehyde 100.0 1.3E-67 4.3E-72 583.6 36.4 352 269-643 29-442 (503)
22 3u4j_A NAD-dependent aldehyde 100.0 1.5E-67 5.1E-72 584.6 36.1 350 269-643 44-451 (528)
23 2o2p_A Formyltetrahydrofolate 100.0 8.3E-68 2.8E-72 585.2 34.0 353 269-643 58-470 (517)
24 2h5g_A Delta 1-pyrroline-5-car 100.0 2.5E-67 8.5E-72 574.5 37.0 368 267-643 11-384 (463)
25 3lns_A Benzaldehyde dehydrogen 100.0 3.3E-67 1.1E-71 574.6 37.7 357 266-643 9-408 (457)
26 1uzb_A 1-pyrroline-5-carboxyla 100.0 4.9E-67 1.7E-71 580.6 38.3 352 268-643 56-466 (516)
27 3qan_A 1-pyrroline-5-carboxyla 100.0 2.3E-67 8E-72 584.3 35.7 350 268-643 56-466 (538)
28 2d4e_A 5-carboxymethyl-2-hydro 100.0 2.8E-67 9.7E-72 581.9 36.2 351 268-643 47-458 (515)
29 2imp_A Lactaldehyde dehydrogen 100.0 1.2E-66 4.1E-71 573.4 40.6 351 268-643 27-432 (479)
30 2j6l_A Aldehyde dehydrogenase 100.0 5.8E-67 2E-71 577.9 37.6 355 268-643 42-451 (500)
31 3i44_A Aldehyde dehydrogenase; 100.0 3.2E-67 1.1E-71 578.4 34.6 350 268-643 46-452 (497)
32 3jz4_A Succinate-semialdehyde 100.0 7.9E-67 2.7E-71 575.1 37.6 351 268-643 30-434 (481)
33 1uxt_A Glyceraldehyde-3-phosph 100.0 5.7E-67 1.9E-71 577.6 36.4 351 269-643 38-444 (501)
34 2w8n_A Succinate-semialdehyde 100.0 7.4E-67 2.5E-71 575.3 37.1 351 268-643 31-439 (487)
35 4dng_A Uncharacterized aldehyd 100.0 8.9E-67 3E-71 575.7 37.6 351 268-643 27-430 (485)
36 4h7n_A Aldehyde dehydrogenase; 100.0 2.8E-67 9.6E-72 577.7 32.9 349 268-643 11-413 (474)
37 2ve5_A BADH, betaine aldehyde 100.0 2E-66 6.8E-71 573.7 37.0 351 268-643 27-436 (490)
38 1euh_A NADP dependent non phos 100.0 2.2E-66 7.4E-71 570.8 36.9 350 268-643 23-426 (475)
39 3r64_A NAD dependent benzaldeh 100.0 2.1E-66 7.2E-71 574.5 36.8 350 269-643 34-437 (508)
40 3sza_A Aldehyde dehydrogenase, 100.0 2.5E-66 8.7E-71 567.9 36.8 338 290-643 17-399 (469)
41 3etf_A Putative succinate-semi 100.0 3.7E-66 1.3E-70 567.8 35.3 349 269-643 13-414 (462)
42 3ju8_A Succinylglutamic semial 100.0 2.3E-65 7.8E-70 564.3 39.2 349 269-643 26-429 (490)
43 1t90_A MMSDH, probable methylm 100.0 6.5E-66 2.2E-70 568.1 33.8 350 268-643 26-430 (486)
44 1ez0_A ALDH, aldehyde dehydrog 100.0 3.2E-66 1.1E-70 573.8 31.0 351 269-641 13-426 (510)
45 3v4c_A Aldehyde dehydrogenase 100.0 2.5E-66 8.6E-71 577.0 29.5 356 267-642 44-462 (528)
46 3ty7_A Putative aldehyde dehyd 100.0 1.5E-65 5E-70 565.0 32.6 347 268-643 28-431 (478)
47 4e3x_A Delta-1-pyrroline-5-car 100.0 2.3E-63 7.9E-68 553.3 35.5 350 268-642 82-498 (563)
48 4f9i_A Proline dehydrogenase/d 100.0 2.6E-63 9E-68 581.4 36.3 352 268-643 550-960 (1026)
49 2y53_A Aldehyde dehydrogenase 100.0 3.3E-62 1.1E-66 544.6 32.6 348 268-641 27-458 (534)
50 3haz_A Proline dehydrogenase; 100.0 4.6E-62 1.6E-66 569.6 33.8 335 290-643 549-937 (1001)
51 3k9d_A LMO1179 protein, aldehy 100.0 1.2E-60 4.2E-65 523.5 33.2 333 290-643 11-394 (464)
52 3my7_A Alcohol dehydrogenase/a 100.0 2.9E-60 9.9E-65 518.9 33.0 335 290-643 6-392 (452)
53 2j5v_A Glutamate 5-kinase; pro 100.0 5.7E-42 2E-46 361.6 21.7 254 12-283 2-258 (367)
54 2ako_A Glutamate 5-kinase; str 100.0 1.3E-39 4.6E-44 328.9 19.7 245 15-281 2-251 (251)
55 3d40_A FOMA protein; fosfomyci 100.0 9.4E-36 3.2E-40 305.3 17.7 254 8-283 16-283 (286)
56 2e9y_A Carbamate kinase; trans 100.0 8.4E-35 2.9E-39 302.4 23.3 255 11-282 1-315 (316)
57 3ll9_A Isopentenyl phosphate k 100.0 4.1E-35 1.4E-39 297.8 18.9 254 14-281 2-266 (269)
58 2rd5_A Acetylglutamate kinase- 100.0 8E-35 2.7E-39 300.7 21.2 245 14-282 36-298 (298)
59 2ap9_A NAG kinase, acetylgluta 100.0 1.6E-34 5.5E-39 298.8 23.4 244 14-283 25-291 (299)
60 2v5h_A Acetylglutamate kinase; 100.0 2.8E-34 9.5E-39 298.7 21.6 246 14-283 49-311 (321)
61 4axs_A Carbamate kinase; oxido 100.0 2.9E-34 1E-38 296.4 21.4 263 5-282 15-332 (332)
62 3l86_A Acetylglutamate kinase; 100.0 8.7E-34 3E-38 287.3 23.8 218 13-263 35-271 (279)
63 3ll5_A Gamma-glutamyl kinase r 100.0 3E-34 1E-38 288.4 17.8 238 14-281 3-249 (249)
64 3nwy_A Uridylate kinase; allos 100.0 8.4E-34 2.9E-38 287.3 20.5 236 7-281 43-280 (281)
65 2buf_A Acetylglutamate kinase; 100.0 9.4E-33 3.2E-37 285.3 24.7 244 13-283 25-297 (300)
66 2we5_A Carbamate kinase 1; arg 100.0 4.9E-33 1.7E-37 288.8 22.0 252 13-281 1-309 (310)
67 2bty_A Acetylglutamate kinase; 100.0 5.3E-33 1.8E-37 285.3 21.6 242 14-283 21-280 (282)
68 2va1_A Uridylate kinase; UMPK, 100.0 8.9E-33 3.1E-37 279.1 21.6 232 10-281 20-255 (256)
69 1e19_A Carbamate kinase-like c 100.0 9.6E-33 3.3E-37 286.4 21.9 253 13-282 1-314 (314)
70 3k4o_A Isopentenyl phosphate k 100.0 1E-32 3.4E-37 279.4 20.2 244 15-283 7-265 (266)
71 2j4j_A Uridylate kinase; trans 100.0 7.7E-33 2.6E-37 275.0 18.8 220 15-282 1-225 (226)
72 3kzf_A Carbamate kinase; argin 100.0 2.6E-32 8.9E-37 276.4 22.7 258 11-282 2-316 (317)
73 2egx_A Putative acetylglutamat 100.0 1.7E-32 5.8E-37 279.3 20.9 236 16-281 1-269 (269)
74 4a7w_A Uridylate kinase; trans 100.0 5.3E-32 1.8E-36 270.3 22.8 232 13-281 6-240 (240)
75 2ogx_B Molybdenum storage prot 100.0 2E-32 6.9E-37 278.6 19.2 231 15-282 37-269 (270)
76 1ybd_A Uridylate kinase; alpha 100.0 1.6E-31 5.6E-36 267.8 24.2 231 13-282 6-239 (239)
77 1z9d_A Uridylate kinase, UK, U 100.0 1.8E-31 6.1E-36 269.2 22.9 232 13-283 6-241 (252)
78 3ek6_A Uridylate kinase; UMPK 100.0 1.1E-31 3.9E-36 268.2 21.3 231 13-282 8-241 (243)
79 2a1f_A Uridylate kinase; PYRH, 100.0 1.5E-31 5E-36 269.2 22.1 233 13-284 7-242 (247)
80 2brx_A Uridylate kinase; UMP k 100.0 2.6E-32 8.8E-37 273.8 14.9 228 10-282 15-244 (244)
81 1gs5_A Acetylglutamate kinase; 100.0 1.8E-31 6E-36 270.5 17.7 240 14-281 2-257 (258)
82 3d2m_A Putative acetylglutamat 100.0 1.5E-30 5E-35 285.6 23.3 238 14-283 43-304 (456)
83 2ogx_A Molybdenum storage prot 100.0 7.9E-31 2.7E-35 267.3 19.7 225 16-283 41-272 (276)
84 2jjx_A Uridylate kinase, UMP k 100.0 2.1E-30 7.2E-35 261.8 22.3 236 10-283 8-247 (255)
85 3zzh_A Acetylglutamate kinase; 100.0 3.5E-31 1.2E-35 271.1 15.8 236 14-283 48-302 (307)
86 2ij9_A Uridylate kinase; struc 100.0 1.6E-30 5.4E-35 257.1 17.8 215 15-281 1-219 (219)
87 3s6g_A N-acetylglutamate kinas 100.0 5.1E-30 1.8E-34 276.2 15.6 241 14-283 58-311 (460)
88 4ab7_A Protein Arg5,6, mitocho 100.0 8.4E-30 2.9E-34 273.7 15.8 236 14-283 48-302 (464)
89 3ab4_A Aspartokinase; aspartat 100.0 2.2E-29 7.4E-34 272.3 19.0 232 14-283 1-244 (421)
90 3s6k_A Acetylglutamate kinase; 100.0 2.1E-29 7.3E-34 271.5 7.9 241 14-283 61-314 (467)
91 3l76_A Aspartokinase; alloster 100.0 2E-28 6.9E-33 274.3 16.0 238 14-283 1-245 (600)
92 3c1m_A Probable aspartokinase; 99.9 9.9E-25 3.4E-29 238.7 19.9 237 16-283 2-301 (473)
93 2j0w_A Lysine-sensitive aspart 99.9 1.3E-24 4.6E-29 235.3 16.9 236 14-283 2-292 (449)
94 2cdq_A Aspartokinase; aspartat 99.9 7.1E-24 2.4E-28 232.1 22.6 239 14-283 26-324 (510)
95 3tvi_A Aspartokinase; structur 99.9 4.6E-24 1.6E-28 229.9 14.2 234 15-283 3-279 (446)
96 4gic_A HDH, histidinol dehydro 95.5 2 7E-05 44.7 21.8 232 363-633 93-344 (423)
97 1kae_A HDH, histidinol dehydro 91.7 14 0.00049 38.5 19.7 234 363-632 87-336 (434)
98 3pdw_A Uncharacterized hydrola 36.3 33 0.0011 32.8 4.7 43 13-61 5-47 (266)
99 3qgm_A P-nitrophenyl phosphata 34.0 33 0.0011 32.8 4.3 44 12-61 6-49 (268)
100 2fiu_A Conserved hypothetical 33.2 95 0.0033 25.1 6.4 69 541-620 2-76 (99)
101 1k1e_A Deoxy-D-mannose-octulos 33.0 35 0.0012 30.7 4.0 59 9-67 3-66 (180)
102 3r4c_A Hydrolase, haloacid deh 32.1 52 0.0018 31.4 5.4 46 12-61 10-55 (268)
103 3fgh_A Transcription factor A, 32.0 83 0.0028 23.1 5.4 35 299-333 29-63 (67)
104 3fzq_A Putative hydrolase; YP_ 32.0 50 0.0017 31.4 5.3 46 11-61 2-47 (274)
105 2obb_A Hypothetical protein; s 31.0 29 0.00098 30.5 2.9 47 14-61 3-49 (142)
106 2b30_A Pvivax hypothetical pro 30.6 57 0.002 32.1 5.6 45 14-62 27-71 (301)
107 3ewi_A N-acylneuraminate cytid 30.1 61 0.0021 29.0 5.1 49 193-262 11-61 (168)
108 1rkq_A Hypothetical protein YI 29.6 64 0.0022 31.2 5.7 45 13-62 4-48 (282)
109 2p9j_A Hypothetical protein AQ 27.2 38 0.0013 29.5 3.2 59 8-66 3-66 (162)
110 3v42_A Folliculin; tumor suppr 25.6 83 0.0028 29.9 5.2 70 418-497 21-90 (226)
111 3f9r_A Phosphomannomutase; try 25.5 74 0.0025 30.3 5.1 46 13-63 3-48 (246)
112 2eqz_A High mobility group pro 25.0 1.2E+02 0.004 23.7 5.3 36 298-333 47-82 (86)
113 1xpj_A Hypothetical protein; s 24.5 1.2E+02 0.004 25.4 5.7 43 15-61 2-49 (126)
114 1l6r_A Hypothetical protein TA 23.7 67 0.0023 30.1 4.4 46 13-63 4-49 (227)
115 1wr8_A Phosphoglycolate phosph 23.4 1.1E+02 0.0038 28.4 5.9 46 13-63 2-47 (231)
116 1k1e_A Deoxy-D-mannose-octulos 22.6 82 0.0028 28.1 4.6 27 245-271 43-69 (180)
117 3pgv_A Haloacid dehalogenase-l 22.6 1.1E+02 0.0038 29.4 5.9 46 11-61 18-63 (285)
118 2pr7_A Haloacid dehalogenase/e 22.3 1.6E+02 0.0056 23.9 6.3 44 15-64 3-46 (137)
119 3dao_A Putative phosphatse; st 22.2 1E+02 0.0035 29.7 5.6 47 11-61 18-64 (283)
120 1v63_A Nucleolar transcription 21.0 1.5E+02 0.0051 24.0 5.4 37 299-335 37-73 (101)
121 2p9j_A Hypothetical protein AQ 20.8 1.2E+02 0.0042 26.0 5.3 27 246-272 45-71 (162)
122 1hry_A Human SRY; DNA, DNA-bin 20.6 1.4E+02 0.0048 22.4 4.9 30 300-329 36-65 (76)
123 4dw8_A Haloacid dehalogenase-l 20.5 1.2E+02 0.004 28.9 5.5 45 13-62 4-48 (279)
No 1
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=100.00 E-value=4e-73 Score=615.66 Aligned_cols=354 Identities=31% Similarity=0.559 Sum_probs=320.4
Q ss_pred cHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhchhhHHHHHhhcChhHHHHHH
Q 006484 289 KQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLA 368 (643)
Q Consensus 289 ~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~ 368 (643)
+.+++++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|+++++++|+.++..+++.....++..++
T Consensus 12 ~~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~g~~ea~~~~~~~~~~ev~~~~ 91 (427)
T 1o20_A 12 HMDELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMI 91 (427)
T ss_dssp --CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccccccccHHHHHHHhcCHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999988877777777677777778999999
Q ss_pred HHHHHHhcccccccccccccccCCCeeEEEEeeeeeeEEEEcCCCchhHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHH
Q 006484 369 KSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHK 448 (643)
Q Consensus 369 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~~P~~~~~~~~~AlaaGN~vi~Kps~~tp~t~~~~~~ 448 (643)
+.+++++++.++.|...+....+.+...+++|+|+|||++|+||||++++++++|||++||+||+||||.||+|+.++++
T Consensus 92 ~~l~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~p~~~~~~~~~~ALaaGNtVVlKps~~tp~t~~~l~~ 171 (427)
T 1o20_A 92 KACETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYESRPNVTVETTILALKSGNTILLRGGSDALNSNKAIVS 171 (427)
T ss_dssp HHHHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECCCEEEECCSCTHHHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHH
T ss_pred HHHHHHHhcccccCccccccccCCCceeEEEeecceeEEEEecCChHHHHHHHHHHHHcCCEEEEECCHhHHHHHHHHHH
Confidence 99999987766555443321112345567899999999999999888888999999999999999999999999999999
Q ss_pred HHHHhcccc-cCcCceEeecC-c-chHhHhhhCCCCccEEEeecCHHHHHHHHHhcCCCEEEecCccceEEEcCCCCHHH
Q 006484 449 VITSAIPDT-VGEKLIGLVTS-R-EEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDV 525 (643)
Q Consensus 449 l~~~a~~~a-lP~g~v~~v~~-~-~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a~~p~~lelGG~~p~iV~~dAdl~~ 525 (643)
++.+++.++ +|+|++|+|++ + ++++++|..||+||+|+||||+.+|+.|++.+.||+++|||||||+||++|||+|.
T Consensus 172 l~~~al~eaGlP~gvv~vv~g~~~~~~~~~L~~~~~v~~I~fTGS~~~G~~i~~~a~~~v~lELGGk~p~iV~~dADl~~ 251 (427)
T 1o20_A 172 AIREALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVIPRGGYGLISFVRDNATVPVLETGVGNCHIFVDESADLKK 251 (427)
T ss_dssp HHHHHHTTSSSCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCSSCBCCCCCCCEEEEECTTSCHHH
T ss_pred HHHHHHHHcCCCcccEEEecCCChHHHHHHHhCCCCccEEEeCCChHHHHHHHHhcCCCEEEecCCCceEEEeCCCCHHH
Confidence 999988888 99999999996 3 45789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCccccceeEEEcCccCCchhHHHHHHHHHHcCCEEecCcccccccc-C--CCCccccccccCceEEE
Q 006484 526 AKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ-I--PETRLFHHEYNSMVCTV 602 (643)
Q Consensus 526 A~~~iv~~~~~n~g~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~~~~~g~~~~~~~~p-v--~~~~~~~eE~FgPvl~v 602 (643)
|++.+++++|.|+|+|+|++|+|||+++| |+|+++|+++++++++.+.|+++..+++| | +++++++||+||||++|
T Consensus 252 Aa~~i~~~~f~n~G~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~~~~gg~~~~~~~Ptl~~~~~~i~~eEiFGPVl~v 330 (427)
T 1o20_A 252 AVPVIINAKTQRPGTCNAAEKLLVHEKIA-KEFLPVIVEELRKHGVEVRGCEKTREIVPDVVPATEDDWPTEYLDLIIAI 330 (427)
T ss_dssp HHHHHHHHHHSCTTSTTSEEEEEEEHHHH-HHHHHHHHHHHHHTTCEEEECHHHHHHSTTSEECCGGGTTCCCCSSEEEE
T ss_pred HHHHHHHHhccCCCCCCCccEEEEehhhH-HHHHHHHHHHHHHcCCeeecChhhhhhCCcccCCCcchhhcccccceEEE
Confidence 99999999999999999999999999999 89999999999999988888765445668 5 46789999999999999
Q ss_pred EEeCCHHHHHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 603 EIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 603 ~~~~~~deAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
++|+|+||||+++|+++|||++||||+|.+++++|++++++
T Consensus 331 ~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~ 371 (427)
T 1o20_A 331 KVVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDA 371 (427)
T ss_dssp EEESSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCS
T ss_pred EEECCHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999875
No 2
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=100.00 E-value=1.1e-71 Score=611.80 Aligned_cols=351 Identities=17% Similarity=0.212 Sum_probs=302.2
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++|+++|++||+.|+++|..+|.++|++++++|++|.++|+++++.|++++.
T Consensus 27 ~nP~tg~~i~~v~~a~------~~dv~~Av~aA~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 98 (490)
T 2wme_A 27 INPANGEVLAKVQRAS------REDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPL-- 98 (490)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred eCCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 3467888999998888 89999999999999999999999999999999999999999999999887765432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~A 424 (643)
.++. ..++..+++.+++++++.+.. +...+. ..+...+++|+|+|||++|+|| ||. +++++++||
T Consensus 99 --~ea~-------~~~v~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~~~a~A 166 (490)
T 2wme_A 99 --AETR-------SVDIVTGADVLEYYAGLVPAIEGEQIPL---RETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPA 166 (490)
T ss_dssp --HHHT-------TTHHHHHHHHHHHHHHHGGGCCEEEEEE---ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHHH-------HHHHHHHHHHHHHHHhccccccCccccc---cCCcceeEEecceeEEEEeccccCcchhhhhhHHHH
Confidence 2221 125677788888887665433 333321 2456678899999999999999 584 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhc-
Q 006484 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a- 501 (643)
|++||+||+||||.||+|+.++++++++ + +|+|++|+|+| +.++++.|..||+||+|+||||+.+|+++++.+
T Consensus 167 LaaGNtVVlKPse~tp~ta~~l~~l~~e----aGlP~gv~~vv~g~g~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~~~a 242 (490)
T 2wme_A 167 LAAGNAMIFKPSEVTPLTALKLAEIYTE----AGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASAS 242 (490)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCeEEEECCcCCHHHHHHHHHHHHH----hCCCCCcEEEEeCChHHHHHHHHhCCCCCEEEEECChHHHHHHHHhhh
Confidence 9999999999999999999999999998 6 99999999995 667888888899999999999999999886533
Q ss_pred ---CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcCC------
Q 006484 502 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 571 (643)
Q Consensus 502 ---~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~~------ 571 (643)
.||++||||||||+||++|||+|+|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 243 ~~~lk~v~lELGGk~p~iV~~dAdl~~A~~~~~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~l~vGdp~~~ 321 (490)
T 2wme_A 243 SSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQ-ARFEAKVLERVQRIRLGDPQDE 321 (490)
T ss_dssp HHHCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred ccCCceEEEEcCCcCeEEEccCccHHHHHHHHHHHHhccCCCcCCCceeeccchhHH-HHHHHHHHHHHHhCcCCCCccc
Confidence 49999999999999999999999999999999999998 999999999999999 8999999999887532
Q ss_pred ----------------------------EE-ecCccc------cccc--c-C-----CCCccccccccCceEEEEEeCCH
Q 006484 572 ----------------------------GL-FGGPRA------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 608 (643)
Q Consensus 572 ----------------------------~~-~g~~~~------~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~ 608 (643)
++ +|+... .++| | | ++|++++||+||||++|++|+|+
T Consensus 322 ~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~G~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 401 (490)
T 2wme_A 322 NTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDE 401 (490)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCTTTGGGTTCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESCH
T ss_pred cCccCCcCCHHHHHHHHHHHHHHHhcCCEEEECCcccCcccccCCCccCCEEEEcCCCCChhhhccccCCEEEEEEeCCH
Confidence 22 244321 2233 5 2 46899999999999999999999
Q ss_pred HHHHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 609 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 609 deAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
||||+++|+++|||++||||+|.+++++|++++++
T Consensus 402 deAi~~aN~~~yGL~a~v~t~d~~~a~~~~~~l~a 436 (490)
T 2wme_A 402 DEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEA 436 (490)
T ss_dssp HHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCCCCCeEEEEcCCHHHHHHHHHHCCe
Confidence 99999999999999999999999999999999975
No 3
>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}
Probab=100.00 E-value=3.5e-71 Score=603.44 Aligned_cols=353 Identities=32% Similarity=0.559 Sum_probs=300.2
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhchhhHHHHHhhcChhHHHHHHH
Q 006484 290 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 369 (643)
Q Consensus 290 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 369 (643)
.+++++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++++.|+.++..+++..+..++..+++
T Consensus 25 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~gk~~~~g~~ea~~~~~~~~~~~v~~~~~ 104 (444)
T 4ghk_A 25 DQYMTDVGRRARRASRSIARASTAAKNAALEAVARAIERDAGALKAANARDVARAKDKGLDAAFVDRLTLSDKALKTMVE 104 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCC------CCSHHHHHCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhccchHHHHHHhhccHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999988776655666666677777778999999
Q ss_pred HHHHHhcccccccccccccccCCCeeEEEEeeeeeeEEEEcCCCchhHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHHH
Q 006484 370 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKV 449 (643)
Q Consensus 370 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~~P~~~~~~~~~AlaaGN~vi~Kps~~tp~t~~~~~~l 449 (643)
.+++++++.++.|...+.+..+.+...+++++|+|||++|+||||++++++++|||++||+||+||||.||.|+.+++++
T Consensus 105 ~l~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~nP~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l 184 (444)
T 4ghk_A 105 GLRQVATLPDPIGEMSNLKYRPSGIQVGQMRVPLGVIGIIYESRPNVTIDAAALCLKSGNATILRGGSEALESNTALAKL 184 (444)
T ss_dssp HHHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECSEEEEECCSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHH
T ss_pred HHHHHHhhccccCccCCcccCCCCccceEEEeccEEEEEEeCCCcHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHH
Confidence 99999877766665443222234566788999999999999999977789999999999999999999999999999999
Q ss_pred HHHhcccc-cCcCceEeecC-cc-hHhHhhhCCCCccEEEeecCHHHHHHHHHhcCCCEEEecCccceEEEcCCCCHHHH
Q 006484 450 ITSAIPDT-VGEKLIGLVTS-RE-EIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVA 526 (643)
Q Consensus 450 ~~~a~~~a-lP~g~v~~v~~-~~-~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a~~p~~lelGG~~p~iV~~dAdl~~A 526 (643)
+.+++.++ ||+|++|+|++ +. .++++|..||+||+|+||||+.+|+.|++.+.||+++|||||||+||++|||+|.|
T Consensus 185 ~~~~l~~aGlP~gvv~vv~g~~~~~~~~~L~~~p~vd~V~fTGs~~vg~~v~~~a~~pv~lELGGk~p~IV~~dADl~~A 264 (444)
T 4ghk_A 185 IGEGLAEAGLPQDTVQVVETADRAAVGRLITMTEYVDVIVPRGGKSLIERLINEARVPMIKHLDGICHVYVDDRASVTKA 264 (444)
T ss_dssp HHHHHHHTTCCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCCSCBCCCCCCCCEEEECTTCCHHHH
T ss_pred HHHHHHHcCCCcccEEEEeCCCHHHHHHHHhcCCCccEEEEECcHHHHHHHHHhCCCCEEEEcCCcCeEEECCCCCHHHH
Confidence 98877778 99999999995 44 58899988999999999999999999998889999999999999999999999999
Q ss_pred HHHHHhhcCCCCCccccceeEEEcCccCCchhHHHHHHHHHHcCCEEecCcccccccc-------C-CCCccccccccCc
Q 006484 527 KNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ-------I-PETRLFHHEYNSM 598 (643)
Q Consensus 527 ~~~iv~~~~~n~g~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~~~~~g~~~~~~~~p-------v-~~~~~~~eE~FgP 598 (643)
++.+++|+|.|+|+|+|++|+|||+++| |+|+++|+++++++++.+.|++....++. + +++++++||+|||
T Consensus 265 a~~i~~~~~~n~G~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~~~~g~p~~~~~i~~a~~G~~~~~~~~~~~eEiFGP 343 (444)
T 4ghk_A 265 LTVCDNAKTHRYGTCNTMETLLVARGIA-PAVLSPLGRLYREKGVELRVDADARAVLEAAGVGPLVDATDEDWRTEYLAP 343 (444)
T ss_dssp HHHCC---------CCCCCEEEEEGGGH-HHHHHHHHHHHHHTTCEEEECHHHHHHHHHTTCCCCEECCSGGGTCC---C
T ss_pred HHHHHHHhcCCCcccCcCceEEEeHHHH-HHHHHHHHHHHHHcCCeecCCHHHHHHHHhcccCcccCCCchhhhccccCc
Confidence 9999999999999999999999999999 89999999999998876556654333321 1 4689999999999
Q ss_pred eEEEEEeCCHHHHHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 599 VCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 599 vl~v~~~~~~deAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
|++|++|+|+||||+++|+++|||++||||+|.++++++++++++
T Consensus 344 Vl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~a~~l~a 388 (444)
T 4ghk_A 344 VLAIKIVDGIDAAIEHINEYGSHHTDAIVTEDHDRAMRFLREVDS 388 (444)
T ss_dssp EEEEEEESSHHHHHHHHHHHSCSSEEEEECSBHHHHHHHHHHCCS
T ss_pred eEEEEEeCCHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999875
No 4
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=100.00 E-value=4.6e-69 Score=588.94 Aligned_cols=352 Identities=40% Similarity=0.660 Sum_probs=296.9
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhchhhHHHHHhhc-ChhHHHHHH
Q 006484 290 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLAL-KPGKISSLA 368 (643)
Q Consensus 290 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~i~~~~ 368 (643)
...+++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++.++|+.++...++.. +..++++++
T Consensus 13 ~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~g~~ea~~~ev~~~~~~~~~~~a 92 (468)
T 1vlu_A 13 MSSSQQIAKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLFKGDKFEVML 92 (468)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCCHHHHHHHCTTSTTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccchHHHHHHhhhhHHHHHHHH
Confidence 3478999999999999999999999999999999999999999999999999888766666765567777 778899999
Q ss_pred HHHHHHhcccccccccccccccCCCeeEEEEeeeeeeEEEEcCCCchhHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHH
Q 006484 369 KSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHK 448 (643)
Q Consensus 369 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~~P~~~~~~~~~AlaaGN~vi~Kps~~tp~t~~~~~~ 448 (643)
+.++.+...+++.|+..+....+.+...+++++|+|||++|+||||.+++++++|||++||+||+||||.||+|+.++++
T Consensus 93 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~pwNP~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~ 172 (468)
T 1vlu_A 93 QGIKDVAELEDPVGKVKMARELDDGLTLYQVTAPVGVLLVIFESRPEVIANITALSIKSGNAAILKGGKESVNTFREMAK 172 (468)
T ss_dssp HHHHHHHHSCCSSSCEEEEEEEETTEEEEEEEEECCEEEEEESSCTHHHHHHHHHHHHHTCEEEEECCGGGHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCeecccccCCCCceeEEEecCcceEEEEeccChHHHHHHHHHHHHcCCEEEEEcCCccHHHHHHHHH
Confidence 99998876555555543311112345678899999999999999996678999999999999999999999999999999
Q ss_pred HHHHhccc----c-cCcCceEeecCcchHhHhhhCCCCccEEEeecCHHHHHHHHHhcCCCEEEecCccceEEEcCCCCH
Q 006484 449 VITSAIPD----T-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANL 523 (643)
Q Consensus 449 l~~~a~~~----a-lP~g~v~~v~~~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a~~p~~lelGG~~p~iV~~dAdl 523 (643)
++++++.+ + ||+|++|+|++++++++.|..||+||+|+||||+.+|+.|++.+.||+++|||||||+||++|||+
T Consensus 173 l~~~aL~e~~~~aGlP~gvv~vv~~~~~~g~~L~~~p~vd~I~fTGS~~~g~~i~~~a~kpv~lElGGk~p~iV~~dADl 252 (468)
T 1vlu_A 173 IVNDTIAQFQSETGVPVGSVQLIETRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTTKIPVLGHADGICSIYLDEDADL 252 (468)
T ss_dssp HHHHHHHHHHHHHCCCTTSEEECCCC--CGGGGGCTTTCCEEEEESCHHHHHHHHHTCCSCBTTBCSCCEEEEECTTCCH
T ss_pred HHHHHHHhhchhcCCCCCcEEEECCHHHHHHHHhhCCCcCEEEEECCHHHHHHHHHhcCCCEEeecCCccceEECCCCCH
Confidence 99988888 8 999999999933367888889999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCccccceeEEEcCccCCchhHHHHHHHHHHcCCEEecCcccccc--------------c-c--C-
Q 006484 524 DVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKL--------------L-Q--I- 585 (643)
Q Consensus 524 ~~A~~~iv~~~~~n~g~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~~~~~g~~~~~~~--------------~-p--v- 585 (643)
|.|++.+++|+|.|+|+|+|++|+|||+++ | +|+++|+++++++++.+.|++....+ + | +
T Consensus 253 ~~Aa~~i~~~~~~n~G~C~a~~rvlV~~~i-d-~f~~~l~~~~~~~~v~~~Gdp~~~~~~i~~a~~~~~gG~g~~Ptvlv 330 (468)
T 1vlu_A 253 IKAKRISLDAKTNYPAGCNAMETLLINPKF-S-KWWEVLENLTLEGGVTIHATKDLKTAYFDKLNELGKLTEAIQCKTVD 330 (468)
T ss_dssp HHHHHHHHHTTCC----CCCCEEEEECTTS-T-THHHHHHHHHHHHCCCBEECHHHHHHHHHHHHHHTCCCHHHHTTBC-
T ss_pred HHHHHHHHHHhcCCCCcCCcCcEEEEECCH-H-HHHHHHHHHHHhcCCeecCCHHHhcccccccceeeccCCCCCCceee
Confidence 999999999999999999999999999999 7 99999999999988655565432112 2 4 2
Q ss_pred -CCCccccccccCceEEEEEeCCHHHHHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 586 -PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 586 -~~~~~~~eE~FgPvl~v~~~~~~deAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.+++++|++++++
T Consensus 331 ~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~a 389 (468)
T 1vlu_A 331 ADEEQDFDKEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAIVTENKANAEKFMKGVDS 389 (468)
T ss_dssp ------------CCCCEEEECCSHHHHHHHHTTSCSSCEEEEECSCHHHHHHHHHHCCC
T ss_pred CCCchhhhcCccCceEEEEEeCCHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHhCCe
Confidence 3588999999999999999999999999999999999999999999999999999875
No 5
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=100.00 E-value=5.4e-69 Score=592.94 Aligned_cols=351 Identities=17% Similarity=0.172 Sum_probs=303.1
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 53 ~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 124 (504)
T 3ek1_A 53 TNPADGSVIGTVPSLS------VATIKEAIDASAKALSGWAAKTAKERAGILRKWFDLIIANADDIALIMTSEQGKPL-- 124 (504)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4567888899988887 89999999999999999999999999999999999999999999999887765432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~A 424 (643)
.++ ..++..+++.+++++.+.+.. +...+. ...+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 125 --~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~--~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~A 192 (504)
T 3ek1_A 125 --AEA--------RGEVLYAASFIEWFAEEAKRVYGDTIPA--PQNGQRLTVIRQPVGVTAAITPWNFPAAMITRKAAPA 192 (504)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHHTTCCEEEECC--SSTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccc--ccccccceeeccCceEEEEECCCcchHHHHHHHHHHH
Confidence 222 236777888888887665443 333221 12356678899999999999998 484 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhcC
Q 006484 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 502 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a~ 502 (643)
|++||+||+||||.||+|+.++++++.+ + ||+|++|+|++ +.++++.|..||+||+|+||||+.+||.|++.+.
T Consensus 193 LaaGN~VVlKPs~~tp~t~~~l~~l~~e----aGlP~gv~~vv~g~~~~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa 268 (504)
T 3ek1_A 193 LAAGCTMIVRPADLTPLTALALGVLAEK----AGIPAGVLQIVTGKAREIGAELTSNDTVRKLSFTGSTEVGRLLMAQCA 268 (504)
T ss_dssp HHHTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTTEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHHG
T ss_pred HHcCCEEEEECCCcChHHHHHHHHHHHH----hCCCcccEEEEeCCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHhhh
Confidence 9999999999999999999999999987 7 99999999995 5667887888999999999999999999998773
Q ss_pred ---CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcCC-------
Q 006484 503 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------- 571 (643)
Q Consensus 503 ---~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~~------- 571 (643)
||+++|||||||+||++|||+|+|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 269 ~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 347 (504)
T 3ek1_A 269 PTIKRISLELGGNAPFIVFDDADLDAAVDGAMVSKYRNAGQTCVCANRIYVQRGVY-DKFAEKLAAKVKELKVGNGTEPG 347 (504)
T ss_dssp GGTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred hhcCCeEecCCCCCeeEEcCCCCHHHHHHHHHHHHHhcCCCCCCCCCEEEEehhHH-HHHHHHHHHHHhhcccCCCcccc
Confidence 9999999999999999999999999999999999998 999999999999999 8999999999887521
Q ss_pred ---------------------------EE-ecCccccccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHHHH
Q 006484 572 ---------------------------GL-FGGPRASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHI 615 (643)
Q Consensus 572 ---------------------------~~-~g~~~~~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~deAi~~a 615 (643)
++ +|+....++| | | ++|++++||+||||++|++|+|+||||+++
T Consensus 348 ~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~a 427 (504)
T 3ek1_A 348 VVIGPMIEEKAITKVKAHIEDAVSKGAKLITGGKELGGLFFEPGILTGVTSDMLVAKEETFGPLAPLFAFDTEEEVIAQA 427 (504)
T ss_dssp CCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCEEETTEECCEEEEEECTTSGGGTSCCCSSEEEEEEECCHHHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCceECCeEEecCCCcChhhcccccCcEEEEEEeCCHHHHHHHH
Confidence 22 2333222333 5 2 468999999999999999999999999999
Q ss_pred HccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 616 HQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 616 N~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
|+++|||++||||+|.++++++++++++
T Consensus 428 N~~~~GL~a~v~t~d~~~a~~~a~~l~a 455 (504)
T 3ek1_A 428 NDTIFGLAAYFYTENFSRAIRVSEALEY 455 (504)
T ss_dssp HCSSCCSEEEEECCBHHHHHHHHHHSCC
T ss_pred hCCCCCeEEEEEcCCHHHHHHHHHhCCc
Confidence 9999999999999999999999999875
No 6
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=100.00 E-value=9.7e-69 Score=589.25 Aligned_cols=350 Identities=15% Similarity=0.150 Sum_probs=303.3
Q ss_pred HHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Q 006484 269 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAG 348 (643)
Q Consensus 269 ~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~g 348 (643)
+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 34 ~P~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~--- 104 (484)
T 3ifg_A 34 DPATGESLGTVPKMG------AAETARAIEAAQAAWAGWRMKTAKERAAILRRWFDLVIANSDDLALILTTEQGKPL--- 104 (484)
T ss_dssp CTTTCCEEEEEECBC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH---
T ss_pred CCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH---
Confidence 456788899988887 88999999999999999999999999999999999999999999999887765432
Q ss_pred hhhHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHHH
Q 006484 349 YAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAI 425 (643)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~Al 425 (643)
.++ ..++..+++.+++++...+. .+...+. ...+...+++|+|+|||++|+|| ||. +.+++++|||
T Consensus 105 -~~a--------~~ev~~~~~~l~~~a~~~~~~~g~~~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~AL 173 (484)
T 3ifg_A 105 -AEA--------KGEIAYAASFIEWFAEEGKRVAGDTLPT--PDANKRIVVVKEPIGVCAAITPWNFPAAMIARKVGPAL 173 (484)
T ss_dssp -HHH--------HHHHHHHHHHHHHHHHHHTTCCEEEECC--SSTTEEEEEEEEECSSEEEECCSSSTTHHHHHHHHHHH
T ss_pred -HHH--------HHHHHHHHHHHHHHHHHHHhhcCccccc--cCCCceeEEEecCCcEEEEECCCcChHHHHHHHHHHHH
Confidence 222 24778888889988865543 2333321 11356778899999999999998 484 6789999999
Q ss_pred HhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhc--
Q 006484 426 RSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (643)
Q Consensus 426 aaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a-- 501 (643)
++||+||+||||.||+|+.++++++.+ + ||+|++|+|++ +.++++.|..||+||+|+||||+.+||.|++.+
T Consensus 174 aaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gv~~vv~g~~~~~g~~L~~~p~v~~v~FTGS~~~G~~i~~~aa~ 249 (484)
T 3ifg_A 174 AAGCPIVVKPAESTPFSALAMAFLAER----AGVPKGVLSVVIGDPKAIGTEITSNPIVRKLSFTGSTAVGRLLMAQSAP 249 (484)
T ss_dssp HHTCCEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCBCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHTGG
T ss_pred HcCCEEEEECCCCCcHHHHHHHHHHHH----hCCCcccEEEEeCCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHHhhc
Confidence 999999999999999999999999987 6 99999999996 556788888899999999999999999999887
Q ss_pred -CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcCC--------
Q 006484 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV-------- 571 (643)
Q Consensus 502 -~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~~-------- 571 (643)
.||+++|||||||+||++|||+|+|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 250 ~~k~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~~ 328 (484)
T 3ifg_A 250 TVKKLTLELGGNAPFIVFDDADLDAAVEGAIASKYRNNGQTCVCTNRFFVHERVY-DAFADKLAAAVSKLKVGRGTESGA 328 (484)
T ss_dssp GTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTTC
T ss_pred cCCceEEecCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCcccCCCeEEEcHHHH-HHHHHHHHHHHHhccCCCCCCCCC
Confidence 39999999999999999999999999999999999998 999999999999999 8999999999887531
Q ss_pred --------------------------EE-ecCccc--cccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHHH
Q 006484 572 --------------------------GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 614 (643)
Q Consensus 572 --------------------------~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~deAi~~ 614 (643)
++ +|+... .++| | | ++|++++||+||||++|++|+|+||||++
T Consensus 329 ~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 408 (484)
T 3ifg_A 329 TLGPLINEAAVKKVESHIADALAKGASLMTGGKRHALGHGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRFASEEELVRL 408 (484)
T ss_dssp CBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEEEECTTSGGGTSCCCSSEEEEEEECCHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCccCCCCceEcCEEEecCCCCChhhCCeeeCcEEEEEEeCCHHHHHHH
Confidence 22 344321 2333 5 2 46899999999999999999999999999
Q ss_pred HHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 615 IHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 615 aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
+|+++|||++||||+|.++++++++++++
T Consensus 409 aN~~~~GL~a~v~t~d~~~a~~~~~~l~a 437 (484)
T 3ifg_A 409 ANDTEFGLAAYLYSRDIGRVWRVAEALEY 437 (484)
T ss_dssp HHCSSEESEEEEECCBHHHHHHHHHHCCC
T ss_pred HhCCCCCceEEEECCCHHHHHHHHHhCCc
Confidence 99999999999999999999999999875
No 7
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Probab=100.00 E-value=1.7e-68 Score=589.71 Aligned_cols=353 Identities=22% Similarity=0.262 Sum_probs=300.8
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 32 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 103 (505)
T 3prl_A 32 SAPASGVALGSIPALS------QEEVNDAIQGAKDAQKIWKIRPIHERVDLLYAWADLLEERKEIIGELIMHEVAKPK-- 103 (505)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4467888899988887 88999999999999999999999999999999999999999999999988876542
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCC---CeeEEEEeeeeeeEEEEcCC-Cc-hhHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELAD---GLILEKTSCPLGVLLIVFES-RP-DALVQIA 421 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~---~~~~~~~~~PlGvv~~I~p~-~P-~~~~~~~ 421 (643)
.++ ..++..+++.++++++..+. .+...+....+. +...+++|+|+|||++|+|| || .+.++++
T Consensus 104 --~ea--------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 173 (505)
T 3prl_A 104 --KSA--------IGEVSRTADIIRHTADEALRLNGETLKGDQFKGGSSKKIALVEREPLGVVLAISPFNYPVNLAAAKI 173 (505)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHHHTCCEEEEEGGGSTTTCSSEEEEEEEEECSEEEEEECSSSTTHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccccccccccCCceeEEEEcCCcEEEEECCCccHHHHHHHHH
Confidence 222 23566667777776654332 233322111111 45678899999999999998 48 4678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHH
Q 006484 422 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (643)
Q Consensus 422 ~~AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~ 499 (643)
+|||++||+||+||||.||+|+.++++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+.+||.|++
T Consensus 174 a~ALaaGN~VVlKpse~tp~ta~~l~~ll~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~ 249 (505)
T 3prl_A 174 APALVTGNTVVFKPATQGSLSGIKMVEALAD----AGAPEGIIQVVTGRGSVIGDHLVEHPGIDMITFTGGTTTGERISE 249 (505)
T ss_dssp HHHHHTTCEEEEEECSTTHHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHHTCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCCChHHHHHHHHHHHH----hCcCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999987 6 99999999996 5677888888999999999999999999999
Q ss_pred hcC-CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC-------
Q 006484 500 STK-IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 570 (643)
Q Consensus 500 ~a~-~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~------- 570 (643)
.++ ||+++|||||||+||++|||+|+|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 250 ~aal~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~ 328 (505)
T 3prl_A 250 KAKMIPVVLELGGKDPAIVLDDADLKLTASQIVSGAFSYSGQRCTAIKRVFVQDSVA-DQLVANIKELVEQLTVGSPEDD 328 (505)
T ss_dssp HCCSSCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCSSSEEEEEEEHHHH-HHHHHHHHHHHHHCCBSCTTTT
T ss_pred HccCCcEEEECCCCCCCccCCCCCHHHHHHHHHHHHHhcCCCccccCceEEEeHHHH-HHHHHHHHHHHHhcccCCCCCc
Confidence 886 9999999999999999999999999999999999998 999999999999999 899999999888753
Q ss_pred --------------------------CEE-ecCccccccc-c-C-----CCCccccccccCceEEEEEeCCHHHHHHHHH
Q 006484 571 --------------------------VGL-FGGPRASKLL-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIH 616 (643)
Q Consensus 571 --------------------------~~~-~g~~~~~~~~-p-v-----~~~~~~~eE~FgPvl~v~~~~~~deAi~~aN 616 (643)
+++ +|+.....++ | | ++|++++||+||||++|++|+|+||||+++|
T Consensus 329 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~V~~~~~~deAi~~aN 408 (505)
T 3prl_A 329 ADITPVIDEKSAAFIQGLIDDALENGATLLSGNKRQGNLLSPTLLDDVTPAMRVAWEEPFGPVLPIIRVKDANEAISLSN 408 (505)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCEETTEECCEEEESCCTTSGGGTSCCCSSEEEEEEESSHHHHHHHHH
T ss_pred CcCCcccCHHHHHHHHHHHHHHHHCCCEEEecCCCCCceeCCeEeecCCCCChhhcCCccCcEEEEEEeCCHHHHHHHHh
Confidence 122 2332211223 5 2 4689999999999999999999999999999
Q ss_pred ccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 617 QHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 617 ~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
+++|||++||||+|.++++++++++++
T Consensus 409 ~~~~gL~a~v~t~d~~~a~~~~~~l~a 435 (505)
T 3prl_A 409 QSDYGLQASIFTKDTDRAINIGKHLEV 435 (505)
T ss_dssp TSSEESEEEEECSCHHHHHHHHHTSCS
T ss_pred CCCCCeEEEEEcCCHHHHHHHHHHCCe
Confidence 999999999999999999999999875
No 8
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=100.00 E-value=2.8e-68 Score=585.04 Aligned_cols=348 Identities=18% Similarity=0.174 Sum_probs=293.7
Q ss_pred HHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Q 006484 269 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAG 348 (643)
Q Consensus 269 ~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~g 348 (643)
+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 10 nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~--- 80 (484)
T 3ros_A 10 NPYTNEAFASYDNPT------SKQIDEAINLAHALYKKWRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKLL--- 80 (484)
T ss_dssp ETTTTEEEEECCCCC------HHHHHHHHHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH---
T ss_pred CCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH---
Confidence 356788888877777 88999999999999999999999999999999999999999999999988876532
Q ss_pred hhhHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEEeeeeeeEEEEcCC-Cc-hhHHHHHHHHH
Q 006484 349 YAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RP-DALVQIASLAI 425 (643)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P-~~~~~~~~~Al 425 (643)
.++. .++..+++.++++++..+. .+...+. ..+...+++++|+|||++|+|| || .+++++++|||
T Consensus 81 -~ea~--------~ev~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~AL 148 (484)
T 3ros_A 81 -SESK--------EEVELCVSICNYYADHGPEMLKPTKLN---SDLGNAYYLKQSTGVIMACEPWNFPLYQVIRVFAPNF 148 (484)
T ss_dssp -HHHH--------HHHHHHHHHHHHHHHHHHHHTSCEEEC---CTTSEEEEEEECCCEEEEECCSSSTTHHHHHHHHHHH
T ss_pred -HHHH--------HHHHHHHHHHHHHHHHHHHhcCCeecc---CCCceeEEEecCCceEEEECCCchHHHHHHHHHHHHH
Confidence 2222 2344455555554433221 1222111 1345678899999999999999 48 46789999999
Q ss_pred HhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhcC-
Q 006484 426 RSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK- 502 (643)
Q Consensus 426 aaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a~- 502 (643)
++||+||+||||.||+|+.++++++.+ + ||+|++|+|+| ++++++ |..||+||+|+||||+.+|+.|++.+.
T Consensus 149 aaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~-L~~~p~vd~I~fTGS~~~G~~i~~~aa~ 223 (484)
T 3ros_A 149 IVGNPILLKHAHNVPGSAALTAKIIKR----AGAPEGSLINLYPSYDQLAD-IIADPRIQGVALTGSERGGSAVAEAAGK 223 (484)
T ss_dssp HHTCCEEEECCTTCHHHHHHHHHHHHH----HTCCTTSEEEECCCHHHHHH-HHTSTTEEEEEEESCHHHHHHHHHHHHH
T ss_pred HcCCEEEEECCCCChHHHHHHHHHHHH----hCcCcCeEEEEeCChHHHHH-HHhCCCcCEEEEECCHHHHHHHHHHHhc
Confidence 999999999999999999999999988 6 99999999995 556778 778999999999999999999998773
Q ss_pred --CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC---------
Q 006484 503 --IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG--------- 570 (643)
Q Consensus 503 --~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~--------- 570 (643)
||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 224 ~lk~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~~ 302 (484)
T 3ros_A 224 NLKKSTMELGGNDAFIVLDDADPQVLRNVLNDARTYNDGQVCTSSKRIIVEKSRY-DEVLHELKNVFSNLKAGDPLEADT 302 (484)
T ss_dssp TTCEEEEECCCCCEEEECTTCCHHHHHHHHTTTTTGGGGCCTTSCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTTC
T ss_pred cCCceEeecCCCCcceeCCCCCHHHHHHHHHHHHhcCCCCCccCCceEEEcHHHH-HHHHHHHHHHHHhccCCCCCCCCC
Confidence 9999999999999999999999999999999999998 999999999999999 899999999988652
Q ss_pred -------------------------CEE-ecCcc--ccccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHHH
Q 006484 571 -------------------------VGL-FGGPR--ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 614 (643)
Q Consensus 571 -------------------------~~~-~g~~~--~~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~deAi~~ 614 (643)
+++ +|+.. ..++| | | ++|++++||+||||++|++|+|+||||++
T Consensus 303 ~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 382 (484)
T 3ros_A 303 TLPPMNSEKAKEKLEAQVKEAIDAGAKVFYQYPEIDSKGAFFRPTILTDIAKDNPVFDKEVFGPIAEVFVVEDDNAAIQL 382 (484)
T ss_dssp CBCCCSCHHHHHHHHHHHHHHHHTTCEEEEECCCCCCSSCCCCCEEEECCCTTSTTTTSCCCSSEEEEEEESSHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCcCCCCCceeCCeEeecCCCCCcccccccccceEEEEEcCCHHHHHHH
Confidence 222 24432 12333 5 2 36899999999999999999999999999
Q ss_pred HHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 615 IHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 615 aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
+|+++|||++||||+|.+++++|++++++
T Consensus 383 aN~~~~GL~a~v~t~d~~~a~~~~~~l~a 411 (484)
T 3ros_A 383 ANDSSYGLGSSVIGSDIDRAKKVSAQIET 411 (484)
T ss_dssp HHSSSCCSCEEEECSCHHHHHHHHHHSCS
T ss_pred HhCCCCCcEEEEECCCHHHHHHHHHhCcc
Confidence 99999999999999999999999999875
No 9
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=100.00 E-value=1.5e-68 Score=589.71 Aligned_cols=350 Identities=15% Similarity=0.155 Sum_probs=301.2
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 32 ~~P~tg~~i~~v~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 103 (506)
T 3rh9_A 32 YNPATGSVIAKVPSMP------EEDVVAAVEAGQSALRLTNPWPIETRRKWLEDIRDGLKENREEIGRILCMEHGKPW-- 103 (506)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 3466788899988888 89999999999999999999999999999999999999999999999988775432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeeEEEEe-eeeeeEEEEcCC-Cc-hhHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTS-CPLGVLLIVFES-RP-DALVQIASL 423 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~-~PlGvv~~I~p~-~P-~~~~~~~~~ 423 (643)
.++ ..++..+++.++++++..+.. +...+. ..+...++++ +|+|||++|+|| || .+++++++|
T Consensus 104 --~ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ 170 (506)
T 3rh9_A 104 --KEA--------QGEVDYAAGFFDYCAKHISALDSHTIPE---KPKDCTWTVHYRPVGVTGLIVPWNFPIGMIAKKLSA 170 (506)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHGGGGCCEECSC---CGGGCEEEEEEEECCSEEEECCSSSTTHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccc---CCCceeeEeecccceEEEEECCCchHHHHHHHHHHH
Confidence 222 236777777888777655433 332221 1345567888 999999999998 48 467899999
Q ss_pred HHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhc
Q 006484 424 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 501 (643)
Q Consensus 424 AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a 501 (643)
||++||+||+||||.||+|+.++++++.+ + ||+|++|+|++ +.++++.|..||+||+|+||||+.+||.|++.+
T Consensus 171 ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~vG~~i~~~a 246 (506)
T 3rh9_A 171 ALAAGCPSVIKPASETPLTMIAFFSVMDK----LDLPDGMVNLVMGKASVIGKVLCEHKDVPMLSFTGSTEVGRKLIVDT 246 (506)
T ss_dssp HHHHTCCEEEECCTTSCHHHHHHHHHHTT----TTCCTTSEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHT
T ss_pred HHHcCCEEEEEcCCccHHHHHHHHHHHHH----hCcChhhEEEEeCCChHHHHHHHhCCCCCEEEEECCHHHHHHHHHHh
Confidence 99999999999999999999999999987 7 99999999996 556777777799999999999999999999887
Q ss_pred ---CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC-------
Q 006484 502 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 570 (643)
Q Consensus 502 ---~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~------- 570 (643)
.||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 247 a~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~ 325 (506)
T 3rh9_A 247 AEQVKKLALELGGNAPFIVFDDADLEAAADNLIANKFRGGGQTCVCANRIFVHEKVA-DAFGQKLAERVNKMTVGDGMND 325 (506)
T ss_dssp TTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSSSSCCEEEEETTTH-HHHHHHHHHHHHHCCBSCTTST
T ss_pred hhcCCceEEecCCCCceEECCCCCHHHHHHHHHHHHHHhCCCCcccCcEEEEcHHHH-HHHHHHHHHHHHhccCCCCccc
Confidence 39999999999999999999999999999999999998 999999999999999 899999999988752
Q ss_pred ---------------------------CEE-ecCccc---cccc--c-C-----CCCccccccccCceEEEEEeCCHHHH
Q 006484 571 ---------------------------VGL-FGGPRA---SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAA 611 (643)
Q Consensus 571 ---------------------------~~~-~g~~~~---~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~deA 611 (643)
+++ +|+... .++| | | ++|++++||+||||++|++|+|+|||
T Consensus 326 ~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deA 405 (506)
T 3rh9_A 326 GIDIGPLINKQGFDKVKRHLQDALDKGASLVAGKQPAELGDGLFFPPTVVQGVDREMCCYQEETFGPLVPMALFRTEEEV 405 (506)
T ss_dssp TCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEESCCGGGCCSSSCCCCEEEECCCTTSHHHHSCCCSSEEEEEEECCHHHH
T ss_pred CCcccccCCHHHHHHHHHHHHHHHHCCCEEEecCCcCCCCCCcEECCeEEccCCCCChhhcccccCcEEEEEEeCCHHHH
Confidence 222 344321 2333 5 2 45899999999999999999999999
Q ss_pred HHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 612 IDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 612 i~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
|+++|+++|||++||||+|.+++++|++++++
T Consensus 406 i~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~a 437 (506)
T 3rh9_A 406 IDAGNDTEFGLASYVFTADAERAQRVAAGLRF 437 (506)
T ss_dssp HHHHTCSSCCSEEEEECSCHHHHHHHHHHCCC
T ss_pred HHHHhCCCCCceEEEEcCCHHHHHHHHHhCCc
Confidence 99999999999999999999999999999875
No 10
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=100.00 E-value=5.3e-68 Score=584.80 Aligned_cols=352 Identities=14% Similarity=0.139 Sum_probs=302.1
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 45 ~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 116 (498)
T 4f3x_A 45 LNPRTGAGIIDLAEAS------HAQIDAAVDAAERAFVGWSQTTPAERSNALLKIADAIEKEADEFAALEALNCGKPI-- 116 (498)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 4467888899988887 89999999999999999999999999999999999999999999999887765432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~A 424 (643)
.++. ..++..+++.++++++..+.. +...+.. ..+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 117 --~ea~-------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~A 185 (498)
T 4f3x_A 117 --NAVK-------NDELPAIIDCWRFFAGAVRNLHAPAAGEY--LPGHTSMIRRDPIGIVGSIAPWNYPLMMMAWKLAPA 185 (498)
T ss_dssp --HHHH-------HTHHHHHHHHHHHHHHHTTCCEEECBEEE--ETTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHHh-------HHHHHHHHHHHHHHHHHHHHhcCccccCC--cccccceEEEcCcceEEEECCCchHHHHHHHHHHHH
Confidence 2221 236777888888887655432 3332211 2356678899999999999998 585 677999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhc--
Q 006484 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~alP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a-- 501 (643)
|++||+||+||||.||+|+.++++++.+ +||+|++|+|++ +.++++.|..||+||+|+||||+.+|+.|++.+
T Consensus 186 LaaGNtVVlKPs~~tp~t~~~l~~l~~e----alP~gv~nvv~g~~~~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa~ 261 (498)
T 4f3x_A 186 IGGGNTVVFKPSEQTPLTALKLARLIAD----ILPEGVVNVITGRGETVGNALINHPKVGMVSITGDIATGKKVLAAAAK 261 (498)
T ss_dssp HHTTCEEEEECCTTCCHHHHHHHHHHHT----TSCTTSEEECCCCTTTHHHHHHTCTTCCEEEEESCHHHHHHHHHHHHT
T ss_pred HHcCCeEEEECCcccHHHHHHHHHHHHH----hCCcCeEEEEeCCchHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHHh
Confidence 9999999999999999999999999987 499999999995 566787788899999999999999999999877
Q ss_pred -CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHc----------
Q 006484 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE---------- 569 (643)
Q Consensus 502 -~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~---------- 569 (643)
.||+++|||||||+||++|||+|+|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++
T Consensus 262 ~~k~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~vG~p~d~~~ 340 (498)
T 4f3x_A 262 TVKRTHLELGGKAPVIVYGDADLEAVVNGIRTFGYYNAGQDCTAACRIYAEAGIY-EKLVADLTSAVSTIRYNLDDDTEN 340 (498)
T ss_dssp TTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHTTGGGGCSTTCEEEEEEETTTH-HHHHHHHHHHHTTCCCSCSSGGGC
T ss_pred hCCceeecCCCCCcEEECCCCCHHHHHHHHHHHHHhcCCCCccCCceEEecHHHH-HHHHHHHHHHHHhcccCCCccccC
Confidence 39999999999999999999999999999999999998 999999999999999 89999999988754
Q ss_pred ------------------------CC-EE-ecCccc--cccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHH
Q 006484 570 ------------------------GV-GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 613 (643)
Q Consensus 570 ------------------------~~-~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~deAi~ 613 (643)
|+ ++ +|+... .++| | | ++|++++||+||||++|++|+|+||||+
T Consensus 341 ~~Gpli~~~~~~~v~~~i~~a~~~Ga~~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 420 (498)
T 4f3x_A 341 EIGPLISRRQRDRVASFVERAADQKHIEITTGGRTGSDEGFFFQPTVVAGATQEDEIVRREVFGPVVSVTRFTGKDDAVA 420 (498)
T ss_dssp SSCCCSCHHHHHHHHHHHHHHHHSTTCEEEECCSBCCSSSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECTTSCHHH
T ss_pred ccccCcCHHHHHHHHHHHHHHHHCCCCEEEECCccCCCCCcEECCEEeecCCCCChhhCCceeCcEEEEEEeCCHHHHHH
Confidence 22 33 244321 2333 5 2 3589999999999999999999999999
Q ss_pred HHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 614 HIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 614 ~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
++|+++|||++||||+|.++++++++++++
T Consensus 421 ~aN~~~~GL~a~v~t~d~~~a~~~a~~l~a 450 (498)
T 4f3x_A 421 WANDSDYGLASSVWTKDISKAMRAASRLQY 450 (498)
T ss_dssp HHHSSSCCSEEEEECSBHHHHHHHHHHCCS
T ss_pred HHhcCCCCceEEEECCCHHHHHHHHHhCCc
Confidence 999999999999999999999999999875
No 11
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=100.00 E-value=2e-68 Score=590.74 Aligned_cols=351 Identities=15% Similarity=0.188 Sum_probs=300.7
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 47 ~nP~tg~~i~~~~~~~------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 118 (521)
T 4e4g_A 47 FNPATGEVQGTVALAS------DADLAAAVESAKAAQPKWAATNPQRRARVFMKFVQLLNDNMNELAEMLSREHGKTI-- 118 (521)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 3466788889988877 88999999999999999999999999999999999999999999999988775432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~A 424 (643)
.++ ..++..+++.+++++++.+.. +...+. ...+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 119 --~ea--------~~Ev~~~~~~l~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~A 186 (521)
T 4e4g_A 119 --DDA--------KGDIVRGLEVCEFVIGIPHLQKSEFTEG--AGPGIDMYSIRQPVGIGAGITPFNFPGMIPMWMFAPA 186 (521)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHTHHHHTCEEEEEE--EETTEEEEEEEEECCEEEEECCSSCTTHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccc--CCCCcceeEEEcCCcEEEEECCCcchHHHHHHHHHHH
Confidence 222 236777888888887654432 222211 12356678899999999999998 584 677999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecCcchHhHhhhCCCCccEEEeecCHHHHHHHHHhc--
Q 006484 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a-- 501 (643)
|++||+||+||||.||+|+.++++++.+ + ||+|++|+|+++.+.++.|..||+||+|+||||+.+||.|++.|
T Consensus 187 LaaGN~VVlKpse~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~~~L~~~p~vd~I~FTGS~~vG~~i~~~aa~ 262 (521)
T 4e4g_A 187 IACGNAFILKPSERDPSVPIRLAELMIE----AGLPAGILNVVNGDKGAVDAILTHPDIAAVSFVGSTPIARYVYGTAAM 262 (521)
T ss_dssp HHTTCEEEEECCTTSTHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHTCTTCCEEEEESCHHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCcchHHHHHHHHHHHH----hCCCcCeEEEEeCChHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHhh
Confidence 9999999999999999999999999987 6 99999999996444556677899999999999999999999876
Q ss_pred -CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCc-cCCchhHHHHHHHHHHcCC-------
Q 006484 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKD-LACNGALNELVVELQHEGV------- 571 (643)
Q Consensus 502 -~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~-i~~~~f~~~l~~~~~~~~~------- 571 (643)
.||+++|||||||+||++|||+|+|++.+++|+|.|+| +|+|++|+|||++ +| |+|+++|+++++++.+
T Consensus 263 ~lkpv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l~~~~~~~~vG~~~~~~ 341 (521)
T 4e4g_A 263 NGKRAQCFGGAKNHMIIMPDADLDQAANALIGAGYGSAGERCMAISVAVPVGEETA-NRLIDKLVPMVESLRIGPYTDEK 341 (521)
T ss_dssp TTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTSEEEEEEBSHHHH-HHHHHHHHHHHHTCCBCCTTCTT
T ss_pred cCCCeeecCCCCCeEEEcCCCCHHHHHHHHHHHHHhCCCCCcccCeEEEEeCchHH-HHHHHHHHHHHHhccCCCCCCcc
Confidence 49999999999999999999999999999999999988 9999999999999 99 8999999999887531
Q ss_pred ---------------------------EE-ecCcc------ccccc--c-C-----CCCccccccccCceEEEEEeCCHH
Q 006484 572 ---------------------------GL-FGGPR------ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 609 (643)
Q Consensus 572 ---------------------------~~-~g~~~------~~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~d 609 (643)
++ +|+.. ..++| | | ++|++++||+||||++|++|+|+|
T Consensus 342 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 421 (521)
T 4e4g_A 342 ADMGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKLQGYENGHFIGGCLFDDVTPDMDIYKTEIFGPVLSVVRARNYE 421 (521)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSSCCCTTCTTSCCCCCEEEESCCTTSHHHHSCCCSSEEEECCBSSHH
T ss_pred CccCCCCCHHHHHHHHHHHHHHHHCCCEEEecCcccCCCcCCCCcEECCEEEEcCCCCCHhhcCcccCcEEEEEEeCCHH
Confidence 22 34432 12333 5 2 358999999999999999999999
Q ss_pred HHHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 610 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 610 eAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
|||+++|+++|||++||||+|.+++++|++++++
T Consensus 422 eAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~a 455 (521)
T 4e4g_A 422 EALSLPMKHEYGNGVAIYTRDGDAARDFASRINI 455 (521)
T ss_dssp HHHHHHHHSSEESEEEEECSBHHHHHHHHHHCCC
T ss_pred HHHHHHhcCCCCeEEEEECCCHHHHHHHHHhCCe
Confidence 9999999999999999999999999999999875
No 12
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=100.00 E-value=3e-68 Score=589.14 Aligned_cols=351 Identities=15% Similarity=0.182 Sum_probs=303.8
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESS--RRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~--~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~ 345 (643)
.+|.+|+.++++...+ .+++++|+++|++|| +.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 53 ~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 126 (520)
T 3ed6_A 53 INPYNQEVIFTVSEGT------KEDAERAILAARRAFESGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKTL 126 (520)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH
Confidence 5577888889887777 899999999999999 89999999999999999999999999999999887765432
Q ss_pred HhchhhHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHH
Q 006484 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 422 (643)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~ 422 (643)
.++ ..++..+++.++++++..+.. +...+. . ..+...+++|+|+|||++|+|| ||. +.+++++
T Consensus 127 ----~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~-~-~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a 192 (520)
T 3ed6_A 127 ----EES--------YADMDDIHNVFMYFAGLADKDGGEMIDS-P-IPDTESKIVKEPVGVVTQITPWNYPLLQASWKIA 192 (520)
T ss_dssp ----HHH--------HHHHHHHHHHHHHHHHHTTSCCEEEECC-S-STTEEEEEEEEECCEEEEECCSSSHHHHHHHHHH
T ss_pred ----HHH--------HHHHHHHHHHHHHHHHHHHHhcCeeccc-C-CCCCcccccccCccEEEEECCCccHHHHHHHHHH
Confidence 222 236788888889888766543 333321 1 1356678899999999999999 585 5679999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHh
Q 006484 423 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 500 (643)
Q Consensus 423 ~AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~ 500 (643)
|||++||+||+||||.||+|+.++++++.+ + ||+|++|+|++ +.++++.|..||+||+|+||||+.+||.|++.
T Consensus 193 pALaaGNtVVlKPs~~tp~t~~~l~~l~~e----aGlP~gvvnvv~g~~~~~g~~L~~~p~vd~V~FTGS~~vG~~i~~~ 268 (520)
T 3ed6_A 193 PALATGCSLVMKPSEITPLTTIRVFELMEE----VGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKHIMKN 268 (520)
T ss_dssp HHHHHTCEEEEECCTTCCHHHHHHHHHHHH----HCCCTTSEEECCSCCTTHHHHHHHCTTCSEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCEEEEEcCCcchHHHHHHHHHHHH----hCCCCCeEEEEeCCChHHHHHHHhCCCcCEEEEECCHHHHHHHHHH
Confidence 999999999999999999999999999987 6 99999999995 56778888889999999999999999999987
Q ss_pred c---CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC------
Q 006484 501 T---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------ 570 (643)
Q Consensus 501 a---~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~------ 570 (643)
+ .||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 269 aa~~l~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~l~vG~p~d 347 (520)
T 3ed6_A 269 AANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNSIK-DKFEQALIDRVKKIKLGNGFD 347 (520)
T ss_dssp HHTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGTSTTCCCEEEEEHHHH-HHHHHHHHHHHTTCCBCCTTS
T ss_pred hhhcCCCEEEEcCCCCeeEECCCCCHHHHHHHHHHHHHhcCCCCcccCceEEEcHHHH-HHHHHHHHHHHHhccCCCCcc
Confidence 7 39999999999999999999999999999999999998 999999999999999 899999999887652
Q ss_pred ----------------------------CEE-ecCccc------cccc--c-C-----CCCccccccccCceEEEEEeCC
Q 006484 571 ----------------------------VGL-FGGPRA------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD 607 (643)
Q Consensus 571 ----------------------------~~~-~g~~~~------~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~ 607 (643)
+++ +|+... .++| | | ++|++++||+||||++|++|+|
T Consensus 348 ~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~f~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 427 (520)
T 3ed6_A 348 ADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFET 427 (520)
T ss_dssp TTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCCCGGGTTTTCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESS
T ss_pred CCCcccccCCHHHHHHHHHHHHHHHhCCCEEEeCCCcCccccCCCCceECCeEEecCCCCCccccCceeCcEEEEEEeCC
Confidence 122 344331 2333 5 2 4689999999999999999999
Q ss_pred HHHHHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 608 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 608 ~deAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
+||||+++|+++|||++||||+|.++++++++++++
T Consensus 428 ~deAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~a 463 (520)
T 3ed6_A 428 EQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLKL 463 (520)
T ss_dssp HHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHSCC
T ss_pred HHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHHCCc
Confidence 999999999999999999999999999999999875
No 13
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=100.00 E-value=1e-67 Score=583.81 Aligned_cols=349 Identities=15% Similarity=0.163 Sum_probs=301.7
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 41 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 112 (503)
T 1a4s_A 41 FEPATGRVLCQMVPCG------AEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTI-- 112 (503)
T ss_dssp ECTTTCCEEEEECCCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 3466788889888777 88999999999999999999999999999999999999999999999887765432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~A 424 (643)
.++ ..++..+++.++++++..+.. ++..+.. .+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 113 --~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~---~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~A 179 (503)
T 1a4s_A 113 --TEA--------EYDIDAAWQCIEYYAGLAPTLSGQHIQLP---GGAFAYTRREPLGVCAGILAWNYPFMIAAWKCAPA 179 (503)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHGGGCCEEEEECG---GGCEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCCcccCC---CCceeEEEEecCceEEEECCCcchHHHHHHHHHHH
Confidence 222 236777888888887655433 4333221 234567899999999999999 484 677999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhc-
Q 006484 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a- 501 (643)
|++||+||+||||.||+|+.++++++++ + ||+|++|+|+| + ++++.|..||+||+|+||||+.+||.|++.+
T Consensus 180 LaaGN~VVlKps~~tp~ta~~l~~l~~~----aGlP~gvv~vv~g~~-~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa 254 (503)
T 1a4s_A 180 LACGNAVVFKPSPMTPVTGVILAEIFHE----AGVPVGLVNVVQGGA-ETGSLLCHHPNVAKVSFTGSVPTGKKVMEMSA 254 (503)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCSH-HHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCCChHHHHHHHHHHHH----hCCCcCeEEEEecCc-hHHHHHHhCCCcCEEEEeCCHHHHHHHHHHhh
Confidence 9999999999999999999999999987 7 99999999996 5 7788788899999999999999999999877
Q ss_pred --CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC--------
Q 006484 502 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 570 (643)
Q Consensus 502 --~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~-------- 570 (643)
.||+++|||||||+||++|||+|+|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 255 ~~~~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 333 (503)
T 1a4s_A 255 KTVKHVTLELGGKSPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIM-PQFLEEVVKRTKAIVVGDPLLTE 333 (503)
T ss_dssp TTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHTTCGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred hcCCceEEecCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEehHHH-HHHHHHHHHHHHhcCCCCCcccC
Confidence 59999999999999999999999999999999999998 999999999999999 899999999988652
Q ss_pred --------------------------CEE-ecCccc--------cccc--c-C-----CCCccccccccCceEEEEEeCC
Q 006484 571 --------------------------VGL-FGGPRA--------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD 607 (643)
Q Consensus 571 --------------------------~~~-~g~~~~--------~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~ 607 (643)
+++ +|+... .++| | | ++|++++||+||||++|++|+|
T Consensus 334 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 413 (503)
T 1a4s_A 334 TRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFDT 413 (503)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSBCCCSSGGGTTSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECC
T ss_pred CccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccccccCCceeCCEEEecCCCCCHHHhccccCceEEEEecCC
Confidence 233 354332 2433 5 2 3588999999999999999999
Q ss_pred HHHHHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 608 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 608 ~deAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
+||||+++|+++|||++||||+|.++++++++++++
T Consensus 414 ~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~a 449 (503)
T 1a4s_A 414 EEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEA 449 (503)
T ss_dssp HHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCS
T ss_pred HHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHCce
Confidence 999999999999999999999999999999999875
No 14
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A*
Probab=100.00 E-value=4.1e-68 Score=583.99 Aligned_cols=352 Identities=18% Similarity=0.209 Sum_probs=300.9
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 17 ~nP~tg~~i~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 88 (486)
T 3pqa_A 17 INPYSLEVIKKIPALS------REEAKEAIDTAEKYKEVMKNLPITKRYNILMNIAKQIKEKKEELAKILAIDAGKPI-- 88 (486)
T ss_dssp ECTTTCCEEEEECCCC------HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 3466788889887777 88999999999999999999999999999999999999999999999887775432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~A 424 (643)
.++ ..++..+++.++++++..+. .+...+. .+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 89 --~ea--------~~Ev~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 154 (486)
T 3pqa_A 89 --KQA--------RVEVERSIGTFKLAAFYVKEHRDEVIPS----DDRLIFTRREPVGIVGAITPFNFPLNLSAHKIAPA 154 (486)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHHHHCCEEEECC----TTEEEEEEEEECSEEEEEECSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCceecC----CCceeEEEEccccEEEEECCCchHHHHHHHHHHHH
Confidence 222 13556666666666543322 2332221 245678899999999999999 585 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhc-
Q 006484 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a- 501 (643)
|++||+||+||||.||+|+.++++++.++++++ ||+|++|+|++ +.++++.|..||+||+|+||||+.+||.|++.+
T Consensus 155 LaaGN~VVlKps~~tp~t~~~l~~l~~~al~~~GlP~gvv~vv~g~~~~~g~~L~~~p~vd~V~fTGS~~~g~~i~~~aa 234 (486)
T 3pqa_A 155 IATGNVIVHHPSSKAPLVCIELAKIIENALKKYNVPLGVYNLLTGAGEVVGDEIVVNEKVNMISFTGSSKVGELITKKAG 234 (486)
T ss_dssp HHTTCEEEEEECTTSCHHHHHHHHHHHHHHHHTTCCGGGEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHCC
T ss_pred HHcCCEEEEECCCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCchHHHHHHHhCCCccEEEEECChHHHHHHHHHcC
Confidence 999999999999999999999999999998888 99999999995 566677777899999999999999999999887
Q ss_pred CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcCC---------
Q 006484 502 KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV--------- 571 (643)
Q Consensus 502 ~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~~--------- 571 (643)
.||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 235 ~~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~~~ 313 (486)
T 3pqa_A 235 FKKIALELGGVNPNIVLKDADLNKAVNALIKGSFIYAGQVCISVGMILVDESIA-DKFIEMFVNKAKVLNVGNPLDEKTD 313 (486)
T ss_dssp SSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTTCS
T ss_pred CCceeeccCCcCcEEEcCCCCHHHHHHHHHHHHHhcCCCCccCCcEEEEeHHHH-HHHHHHHHHHHHhcccCCCCcCCCC
Confidence 69999999999999999999999999999999999998 999999999999999 8999999998886532
Q ss_pred -------------------------EE-ecCccccccc-c-C----CCCccccccccCceEEEEEeCCHHHHHHHHHccC
Q 006484 572 -------------------------GL-FGGPRASKLL-Q-I----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHG 619 (643)
Q Consensus 572 -------------------------~~-~g~~~~~~~~-p-v----~~~~~~~eE~FgPvl~v~~~~~~deAi~~aN~~~ 619 (643)
++ +|+.....++ | | ++|++++||+||||++|++|+| ||||+++|+++
T Consensus 314 ~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~g~~~~Ptvl~v~~~~~i~~eEiFGPVl~v~~~~~-deAi~~aN~~~ 392 (486)
T 3pqa_A 314 VGPLISVEHAEWVEKVVEKAIDEGGKLLLGGKRDKALFYPTILEVDRDNILCKTETFAPVIPIIRTNE-EEMIDIANSTE 392 (486)
T ss_dssp BCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCEETTEECCEEEECCTTSGGGTCCCCSSEEEEEEECH-HHHHHHHTCSS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCEEEecCCCCCcEeccEEEeCCCCChhhcccccccEEEEEEEcH-HHHHHHHhcCC
Confidence 11 2332211122 5 2 4689999999999999999999 99999999999
Q ss_pred CCceeEEEecCHHHHHHHHHhcCC
Q 006484 620 SAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 620 ~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
|||++||||+|.++++++++++++
T Consensus 393 ~gL~a~v~t~d~~~a~~~~~~l~a 416 (486)
T 3pqa_A 393 YGLHSAIFTNDINKSLKFAENLEF 416 (486)
T ss_dssp CCSEEEEECSBHHHHHHHHHHSCS
T ss_pred CCcEEEEECCCHHHHHHHHHhCCc
Confidence 999999999999999999999875
No 15
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=100.00 E-value=5.9e-68 Score=586.40 Aligned_cols=347 Identities=14% Similarity=0.144 Sum_probs=297.2
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 35 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 106 (517)
T 3r31_A 35 IFPATGEMIAKLHAAT------PAIVERAIASAKRAQKEWAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKPI-- 106 (517)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 3467788899988888 89999999999999999999999999999999999999999999999887765432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhccccc----c-cccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP----I-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQI 420 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~-g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~ 420 (643)
.++ ++..+++.+++++++.++ . ++..+. ..+. .+++|+|+|||++|+|| ||. +++++
T Consensus 107 --~ea----------ev~~~~~~~~~~a~~~~~~~~~~~g~~~~~---~~~~-~~~~~~P~GVV~~I~PwN~P~~~~~~~ 170 (517)
T 3r31_A 107 --QET----------IVADPTSGADAFEFFGGIAPSALNGDYIPL---GGDF-AYTKRVPLGVCVGIGAWNYPQQIACWK 170 (517)
T ss_dssp --HHH----------HHHSHHHHHHHHHHHHHHHHHHTCCCEEEC---SSSE-EEEEEEECSEEEEECCSSSHHHHHHHH
T ss_pred --HHH----------HHHHHHHHHHHHHHHhhhccccccCccccc---CCCc-ceEEEcCccEEEEECCCcchHHHHHHH
Confidence 121 445555556655544332 2 332221 2345 78899999999999998 584 67899
Q ss_pred HHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecCcchHhHhhhCCCCccEEEeecCHHHHHHHHH
Q 006484 421 ASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (643)
Q Consensus 421 ~~~AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~ 499 (643)
++|||++||+||+||||.||+|+.++++++.+ + ||+|++|+|+|+.++++.|..||+||+|+||||+.+|+.|++
T Consensus 171 ~a~ALaaGN~VVlKps~~tp~t~~~l~~ll~e----aGlP~gvv~vv~g~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~ 246 (517)
T 3r31_A 171 AAPALVAGNAMVFKPSENTPLGALKIAEILIE----AGLPKGLFNVIQGDRDTGPLLVNHPDVAKVSLTGSVPTGRKVAA 246 (517)
T ss_dssp HHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH----TTCCTTSEEECCCCTTHHHHHHTCTTEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEcCcccHHHHHHHHHHHHH----hCcCcccEEEEECCHHHHHHHHhCCCcCEEeccCCHHHHHHHHH
Confidence 99999999999999999999999999999988 7 999999999976567777778999999999999999999998
Q ss_pred hc---CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC-----
Q 006484 500 ST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG----- 570 (643)
Q Consensus 500 ~a---~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~----- 570 (643)
.+ .||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 247 ~aa~~lk~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~ 325 (517)
T 3r31_A 247 AAAGHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSSGQVCSNGTRVFVQKKAK-ARFLENLKRRTEAMILGDPL 325 (517)
T ss_dssp HHHHTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHTSCCHHHHTTCEEEEEEGGGH-HHHHHHHHHHHHHCCBCCTT
T ss_pred HhhcCCCcEEEEcCCcCeEEEecCCCHHHHHHHHHHHHhcCCCceeccCceEEEeHHHH-HHHHHHHHHHHHhccCCCCC
Confidence 77 49999999999999999999999999999999999998 999999999999999 899999999988752
Q ss_pred -----------------------------CEE-ecCc-c----ccccc--c-C-----CCCccccccccCceEEEEEeCC
Q 006484 571 -----------------------------VGL-FGGP-R----ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD 607 (643)
Q Consensus 571 -----------------------------~~~-~g~~-~----~~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~ 607 (643)
.++ +|+. . ..++| | | ++|++++||+||||++|++|+|
T Consensus 326 ~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 405 (517)
T 3r31_A 326 DYATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCVLDFDD 405 (517)
T ss_dssp STTCSBCCBSCHHHHHHHHHHHHHHHHHTCEEEECCSCCSSCCSSSBCCCCEEEEEECTTSHHHHSCCSSSEEEEEEECC
T ss_pred CcCCcccCCcCHHHHHHHHHHHHHHHhCCCEEEECCccCcccCCCCceECCEEEecCCCCCccccceeeccEEEEEEeCC
Confidence 222 3542 1 12333 5 2 4689999999999999999999
Q ss_pred HHHHHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 608 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 608 ~deAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
+||||+++|+++|||++||||+|.+++++|++++++
T Consensus 406 ~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~a 441 (517)
T 3r31_A 406 EDEVLARANATEFGLAGGVFTADLARAHRVVDGLEA 441 (517)
T ss_dssp HHHHHHHHHCSSEESEEEEECSCHHHHHHHHHHSCC
T ss_pred HHHHHHHHhCCCCCeeEEEEeCCHHHHHHHHHHCCc
Confidence 999999999999999999999999999999999875
No 16
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=100.00 E-value=1.4e-67 Score=580.97 Aligned_cols=352 Identities=15% Similarity=0.155 Sum_probs=300.9
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|+++|+++++.|++++.
T Consensus 43 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 114 (495)
T 1wnd_A 43 YNPATGDVLLEIAEAS------AEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPL-- 114 (495)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4567788889888887 88999999999999999999999999999999999999999999999887765432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEEeeeeeeEEEEcCCC-c-hhHHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFESR-P-DALVQIASLA 424 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~~-P-~~~~~~~~~A 424 (643)
.++.. .++..+++.++++++..+. .|+..+.. . .+...+++|+|+|||++|+||| | .+++++++||
T Consensus 115 --~ea~~-------~Ev~~~~~~~~~~a~~~~~~~g~~~~~~-~-~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~A 183 (495)
T 1wnd_A 115 --HSAFN-------DEIPAIVDVFRFFAGAARCLNGLAAGEY-L-EGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPA 183 (495)
T ss_dssp --HHHHH-------THHHHHHHHHHHHHHHTTCCEEECBEEE-E-TTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHHHH-------HHHHHHHHHHHHHHHHHHHhcCccccCC-C-CCceeEEeeecCCeEEEECCCcchHHHHHHHHHHH
Confidence 22211 1566777778877754432 24333211 1 2456688999999999999995 8 4678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhc--
Q 006484 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~alP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a-- 501 (643)
|++||+||+|||+.||+|+.++++++.+ +||+|++|+|+| +.++++.|..||+||+|+||||+.+|+.|++.+
T Consensus 184 LaaGN~VVlKps~~tp~t~~~l~~l~~e----alP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~~aa~ 259 (495)
T 1wnd_A 184 LAAGNCVVLKPSEITPLTALKLAELAKD----IFPAGVVNILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTAS 259 (495)
T ss_dssp HHTTCEEEEECCTTCCHHHHHHHHHHTT----TSCTTSEEECCCCTTTTHHHHHTCTTEEEEEEESCHHHHHHHHHHHGG
T ss_pred HHcCCeeEeeCCCCChHHHHHHHHHHHH----hCCcCeEEEEeCCCHHHHHHHHhCCCcCEEEEECcHHHHHHHHHHHHh
Confidence 9999999999999999999999999987 499999999996 556677777899999999999999999999877
Q ss_pred -CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHc----------
Q 006484 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE---------- 569 (643)
Q Consensus 502 -~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~---------- 569 (643)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++
T Consensus 260 ~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~~ 338 (495)
T 1wnd_A 260 SIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIY-DTLVEKLGAAVATLKSGAPDDEST 338 (495)
T ss_dssp GTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHTTGGGGCSTTCCCEEEEETTTH-HHHHHHHHHHHHTCCBCCTTSTTC
T ss_pred cCCccccccCCCCeEEECCcCCHHHHHHHHHHHHHhcCCCCCCCCcEEEecchhH-HHHHHHHHHHHHhccCCCCccCCC
Confidence 49999999999999999999999999999999999998 999999999999999 89999999988764
Q ss_pred ------------------------C-CEEe-cCc-cc-cccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHH
Q 006484 570 ------------------------G-VGLF-GGP-RA-SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 613 (643)
Q Consensus 570 ------------------------~-~~~~-g~~-~~-~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~deAi~ 613 (643)
| +++. |+. .. .+++ | | ++|++++||+||||++|++|+|+||||+
T Consensus 339 ~~Gpli~~~~~~rv~~~i~~a~~~G~a~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 418 (495)
T 1wnd_A 339 ELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVVN 418 (495)
T ss_dssp CBCCCSCHHHHHHHHHHHHHHHHTSSCEEEECCSBCSSSSCCBCCEEEECCCTTSHHHHSCCCSSEEEEEEECCHHHHHH
T ss_pred CccCCCCHHHHHHHHHHHHHHHhCCCeEEEECCcccCCCCCeeCCEEEeCCCCCChhhhccccCceEEEEEeCCHHHHHH
Confidence 3 4443 554 21 2333 5 2 3589999999999999999999999999
Q ss_pred HHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 614 HIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 614 ~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
++|+++|||++||||+|.+++++|++++++
T Consensus 419 ~aN~~~~gL~a~v~t~d~~~a~~~~~~l~a 448 (495)
T 1wnd_A 419 WANDSQYGLASSVWTKDVGRAHRVSARLQY 448 (495)
T ss_dssp HHHSSSCCSEEEEECSBHHHHHHHHHHCCS
T ss_pred HHhcCCCCeeEEEECCCHHHHHHHHHhCCc
Confidence 999999999999999999999999999875
No 17
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=100.00 E-value=6.9e-68 Score=584.18 Aligned_cols=349 Identities=14% Similarity=0.139 Sum_probs=299.5
Q ss_pred HHcCCceeeEEecCccccccHHhHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 006484 270 VLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR---RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 346 (643)
Q Consensus 270 ~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~ 346 (643)
|.+|+.++++...+ .+++++++++|++||+ .|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 42 P~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 114 (500)
T 1o04_A 42 PSTGEVICQVAEGD------KEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPY- 114 (500)
T ss_dssp TTTTEEEEEEECBC------HHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred CCCCCEEEEEeCCC------HHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-
Confidence 56788889888887 8899999999999999 9999999999999999999999999999999887765432
Q ss_pred hchhhHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEEeeeeeeEEEEcCCC-ch-hHHHHHHH
Q 006484 347 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFESR-PD-ALVQIASL 423 (643)
Q Consensus 347 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~~-P~-~~~~~~~~ 423 (643)
.++. ..++..+++.++++++..+. .|...+. ..+...+++|+|+|||++|+||| |. +.+++++|
T Consensus 115 ---~ea~-------~~ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ 181 (500)
T 1o04_A 115 ---VISY-------LVDLDMVLKCLRYYAGWADKYHGKTIPI---DGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGP 181 (500)
T ss_dssp ---HHHH-------HTHHHHHHHHHHHHHHHTTTCCEEEECC---SSSEEEEEEEEECCEEEEECCSSSHHHHHHHHHHH
T ss_pred ---HHHH-------HHHHHHHHHHHHHHHHHHHHhhCcceec---CCCceEEEEEecCCcEEEECCCCchHHHHHHHHHH
Confidence 1221 13566777777777654432 3433221 23456688999999999999995 84 67799999
Q ss_pred HHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhc
Q 006484 424 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 501 (643)
Q Consensus 424 AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a 501 (643)
||++||+||+||||.||+|+.++++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+.+|+.|++.+
T Consensus 182 ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~~a 257 (500)
T 1o04_A 182 ALATGNVVVMKVAEQTPLTALYVANLIKE----AGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVAA 257 (500)
T ss_dssp HHHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCBCTTTHHHHHHTCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCEEEEECCccChHHHHHHHHHHHH----hCCCcCeEEEEecCcHHHHHHHHhCCCcCEEEEECCHHHHHHHHHhh
Confidence 99999999999999999999999999987 6 99999999996 666788788899999999999999999998765
Q ss_pred C----CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC------
Q 006484 502 K----IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------ 570 (643)
Q Consensus 502 ~----~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~------ 570 (643)
. ||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 258 a~~~l~pv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~ 336 (500)
T 1o04_A 258 GSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQEDIY-DEFVERSVARAKSRVVGNPFD 336 (500)
T ss_dssp HHTTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHH-HHHHHHHHHHHHHCCBCCTTS
T ss_pred hhhcCceEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhccCCCCCCCCCEEEEehhHH-HHHHHHHHHHHHhCcCCCccc
Confidence 4 9999999999999999999999999999999999998 999999999999999 899999999987752
Q ss_pred ----------------------------CEE-ecCccc--cccc--c-C-----CCCccccccccCceEEEEEeCCHHHH
Q 006484 571 ----------------------------VGL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAA 611 (643)
Q Consensus 571 ----------------------------~~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~deA 611 (643)
+++ +|+... .++| | | ++|++++||+||||++|++|+|+|||
T Consensus 337 ~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deA 416 (500)
T 1o04_A 337 SKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEV 416 (500)
T ss_dssp TTCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCCSSSSCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECCHHHH
T ss_pred ccCccCcccCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCeeCCEEEeCCCCCChhhhCcccceEEEEEeeCCHHHH
Confidence 222 244332 2333 5 2 35789999999999999999999999
Q ss_pred HHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 612 IDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 612 i~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
|+++|+++|||++||||+|.+++++|++++++
T Consensus 417 i~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~a 448 (500)
T 1o04_A 417 VGRANNSTYGLAAAVFTKDLDKANYLSQALQA 448 (500)
T ss_dssp HHHHHCSSCCSEEEEECSBHHHHHHHHHHCCS
T ss_pred HHHHhcCCCCceEEEECCCHHHHHHHHHhCCe
Confidence 99999999999999999999999999999875
No 18
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=100.00 E-value=1.2e-67 Score=582.88 Aligned_cols=350 Identities=16% Similarity=0.192 Sum_probs=301.6
Q ss_pred HHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Q 006484 269 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAG 348 (643)
Q Consensus 269 ~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~g 348 (643)
+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 34 nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~--- 104 (497)
T 3k2w_A 34 SPSTGKVIGEIPAGC------KADAENALEVAQAAQKAWAKLTARTRQNMLRTFANKIRENKHILAPMLVAEQGKLL--- 104 (497)
T ss_dssp CSSSCSEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCH---
T ss_pred CCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---
Confidence 356788889988887 89999999999999999999999999999999999999999999999887765432
Q ss_pred hhhHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHHH
Q 006484 349 YAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAI 425 (643)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~Al 425 (643)
.++ ..++..+++.++++++..+.. +...+.. ..+...+++++|+|||++|+|| ||. +.+++++|||
T Consensus 105 -~~a--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~AL 173 (497)
T 3k2w_A 105 -SVA--------EMEVDVTATFIDYGCDNALTIEGDILPSD--NQDEKIYIHKVPRGVVVGITAWNFPLALAGRKIGPAL 173 (497)
T ss_dssp -HHH--------HHHHHHHHHHHHHHHHTTTTCCEEEEECS--STTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHHH
T ss_pred -HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCcceeEEEcCCceEEEECCCccHHHHHHHHHHHHH
Confidence 222 136777788888887655433 3332211 2456778899999999999998 585 6679999999
Q ss_pred HhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhcC-
Q 006484 426 RSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK- 502 (643)
Q Consensus 426 aaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a~- 502 (643)
++||+||+||||.||+|+.++++++.+ + ||+|++|+|++ +.++++.|..||+||+|+||||+.+||.|++.+.
T Consensus 174 aaGN~VVlKps~~tp~t~~~l~~ll~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~fTGS~~~G~~i~~~aa~ 249 (497)
T 3k2w_A 174 ITGNTMVLKPTQETPLATTELGRIAKE----AGLPDGVLNVINGTGSVVGQTLCESPITKMITMTGSTVAGKQIYKTSAE 249 (497)
T ss_dssp HTTCEEEEECCSSSCHHHHHHHHHHHH----TTCCTTSEEECCSCTTTHHHHHHHCSSEEEEEEESCHHHHHHHHHHHTT
T ss_pred HcCCEEEEECCCCChHHHHHHHHHHHH----hCcCcCeEEEEeCCchHHHHHHHhCCCcCEEEEECcHHHHHHHHHHhhh
Confidence 999999999999999999999999987 7 99999999995 5567777778999999999999999999998873
Q ss_pred --CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcCC--------
Q 006484 503 --IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV-------- 571 (643)
Q Consensus 503 --~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~~-------- 571 (643)
||+++|||||||+||++|||+|+|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 250 ~l~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~vg~p~~~~~ 328 (497)
T 3k2w_A 250 YMTPVMLELGGKAPMVVMDDADLDKAAEDALWGRFANCGQVCTCVERLYVHASVY-DEFMAKFLPLVKGLKVGDPMDADS 328 (497)
T ss_dssp TTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTSEEEEEEETTTH-HHHHHHHHHHHHTCCBSCTTSTTC
T ss_pred cCCCeEEEcCCCCceEEcCCCCHHHHHHHHHHHHHhCCCCCCcCCcEEEEeHHHH-HHHHHHHHHHHHhccCCCCCCCCC
Confidence 9999999999999999999999999999999999998 999999999999999 8999999999887632
Q ss_pred --------------------------EE-ecCcc--c----cccc--c-C-----CCCccccccccCceEEEEEeCCHHH
Q 006484 572 --------------------------GL-FGGPR--A----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 610 (643)
Q Consensus 572 --------------------------~~-~g~~~--~----~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~de 610 (643)
++ +|+.. . .++| | | ++|++++||+||||++|++|+|+||
T Consensus 329 ~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 408 (497)
T 3k2w_A 329 QMGPKCNQREIDNIDHIVHEAIKQGATVATGGKTATVEGFEGGCWYEPTVLVDVKQDNIVVHEETFGPILPIVKVSSMEQ 408 (497)
T ss_dssp SBCCCSCHHHHHHHHHHHHHHHHHHCEEEECCC---------CCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESCHHH
T ss_pred ccccCcCHHHHHHHHHHHHHHHHCCCEEEecCccCCccccCCCceeCCEEEecCCCCcHhhcCCccCcEEEEEEeCCHHH
Confidence 22 34431 1 2333 5 2 4689999999999999999999999
Q ss_pred HHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 611 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 611 Ai~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
||+++|+++|||++||||+|.+++++|++++++
T Consensus 409 Ai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~a 441 (497)
T 3k2w_A 409 AIEFCNDSIYGLSAYVHTQSFANINQAISDLEV 441 (497)
T ss_dssp HHHHHTCSSEESEEEEECSBHHHHHHHHHHCCS
T ss_pred HHHHHhcCCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 999999999999999999999999999999875
No 19
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.2e-67 Score=582.05 Aligned_cols=351 Identities=14% Similarity=0.113 Sum_probs=301.3
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR--RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~ 345 (643)
.+|.+|+.++++...+ .+++++++++|++||+ .|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 29 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 102 (495)
T 3b4w_A 29 RCPATGEYVGKVPMAA------AADVDAAVAAARAAFDNGPWPSTPPHERAAVIAAAVKMLAERKDLFTKLLAAETGQPP 102 (495)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHSSTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3456788889988887 8899999999999999 8999999999999999999999999999999887765432
Q ss_pred HhchhhHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHH
Q 006484 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 422 (643)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~ 422 (643)
.++. ..++..+++.++++++..+. .+...+. +.+...+++|+|+|||++|+|| ||. +++++++
T Consensus 103 ----~ea~-------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~ 168 (495)
T 3b4w_A 103 ----TIIE-------TMHWMGSMGAMNYFAGAADKVTWTETRT---GSYGQSIVSREPVGVVGAIVAWNVPLFLAVNKIA 168 (495)
T ss_dssp ----HHHH-------HTTTHHHHHHHHHHHTCGGGSCSEEEEE---ETTEEEEEEEEECCEEEEECCSSSHHHHHHHHHH
T ss_pred ----HHHH-------HHHHHHHHHHHHHHHHHHHHhcCCcccC---CCCceEEEEEccCceEEEECCCcchHHHHHHHHH
Confidence 2221 12566777888888765443 2433221 2344668899999999999999 484 6779999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecCcchHhHhhhCCCCccEEEeecCHHHHHHHHHhc
Q 006484 423 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 501 (643)
Q Consensus 423 ~AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a 501 (643)
|||++||+||+||||.||+|+.++++++.+ + ||+|++|+|+++.++++.|..||+||+|+||||+.+|+.|++.+
T Consensus 169 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~g~~L~~~~~v~~I~FTGS~~~G~~i~~~a 244 (495)
T 3b4w_A 169 PALLAGCTIVLKPAAETPLTANALAEVFAE----VGLPEGVLSVVPGGIETGQALTSNPDIDMFTFTGSSAVGREVGRRA 244 (495)
T ss_dssp HHHHTTCEEEEECBTTSCHHHHHHHHHHHH----TTCCTTSEEECCBSHHHHHHHTTCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHcCCEEEEecCCccHHHHHHHHHHHHH----hCCCcCeEEEEeCCHHHHHHHHhCCCcCEEEEeCCHHHHHHHHHHh
Confidence 999999999999999999999999999998 7 99999999997555677777899999999999999999999877
Q ss_pred ---CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC-------
Q 006484 502 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 570 (643)
Q Consensus 502 ---~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~------- 570 (643)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 245 a~~l~pv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~ 323 (495)
T 3b4w_A 245 AEMLKPCTLELGGKSAAIILEDVDLAAAIPMMVFSGVMNAGQGCVNQTRILAPRSRY-DEIVAAVTNFVTALPVGPPSDP 323 (495)
T ss_dssp HHTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEGGGH-HHHHHHHHHHHHHSCBCCTTCT
T ss_pred hhcCCceeecCCCcceEEECCCCCHHHHHHHHHHHHhhcCCCCCCCCeEEEEcccHH-HHHHHHHHHHHHhcCCCCCccC
Confidence 59999999999999999999999999999999999998 999999999999999 899999999887652
Q ss_pred ---------------------------CEE-ecCccc----cccc--c-C-----CCCccccccccCceEEEEEeCCHHH
Q 006484 571 ---------------------------VGL-FGGPRA----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 610 (643)
Q Consensus 571 ---------------------------~~~-~g~~~~----~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~de 610 (643)
+++ +|+... .++| | | ++|++++||+||||++|++|+|+||
T Consensus 324 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 403 (495)
T 3b4w_A 324 AAQIGPLISEKQRTRVEGYIAKGIEEGARLVCGGGRPEGLDNGFFIQPTVFADVDNKMTIAQEEIFGPVLAIIPYDTEED 403 (495)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCTTCTTSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHH
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHhCCCEEEecCcccccccCCceeCCEEecCCCCCChhhhcccccceEEEEecCCHHH
Confidence 233 355432 2333 5 2 3588999999999999999999999
Q ss_pred HHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 611 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 611 Ai~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
||+++|+++|||++||||+|.+++++|++++++
T Consensus 404 Ai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~a 436 (495)
T 3b4w_A 404 AIAIANDSVYGLAGSVWTTDVPKGIKISQQIRT 436 (495)
T ss_dssp HHHHHHCSSCCSCCEEECSCHHHHHHHHHHSCC
T ss_pred HHHHHhcCCCCeEEEEECCCHHHHHHHHHhCCE
Confidence 999999999999999999999999999999875
No 20
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=100.00 E-value=1.1e-67 Score=582.57 Aligned_cols=350 Identities=16% Similarity=0.162 Sum_probs=299.5
Q ss_pred HHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 006484 269 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR---RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (643)
Q Consensus 269 ~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~ 345 (643)
+|.+|+.++++...+ .+++++++++|++||+ .|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 42 nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 115 (501)
T 1bxs_A 42 NPATEEKLCEVEEGD------KEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLF 115 (501)
T ss_dssp CTTTCCEEEEEECCC------HHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCH
T ss_pred CCCCCCEEEEEeCCC------HHHHHHHHHHHHHHhhcccchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 356788889988887 8899999999999999 9999999999999999999999999999999988775432
Q ss_pred HhchhhHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEEeeeeeeEEEEcCCC-ch-hHHHHHH
Q 006484 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFESR-PD-ALVQIAS 422 (643)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~~-P~-~~~~~~~ 422 (643)
.++. ..++..+++.++++++..+. .+...+. ..+...+++|+|+|||++|+||| |. +++++++
T Consensus 116 ----~e~~-------~~ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a 181 (501)
T 1bxs_A 116 ----SNAY-------LMDLGGCIKTLRYCAGWADKIQGRTIPM---DGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIG 181 (501)
T ss_dssp ----HHHH-------HTHHHHHHHHHHHHHHHGGGCCEEEECC---SSSEEEEEEEEECCEEEEECCSSSHHHHHHHHHH
T ss_pred ----HHHH-------HHHHHHHHHHHHHHHHHHHHhhCCeeec---cCCcceeEEecCCceEEEECCCcchHHHHHHHHH
Confidence 1221 13566677777777654432 2433221 23456688999999999999995 84 6779999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHh
Q 006484 423 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 500 (643)
Q Consensus 423 ~AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~ 500 (643)
|||++||+||+||||.||+|+.++++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+.+|+.|++.
T Consensus 182 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gv~~vv~g~~~~~g~~L~~~~~v~~I~FTGS~~~G~~i~~~ 257 (501)
T 1bxs_A 182 PALSCGNTVVVKPAEQTPLTALHMGSLIKE----AGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEA 257 (501)
T ss_dssp HHHHTTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHTCTTCSEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCeeeccCCCccHHHHHHHHHHHHH----hCCCcceEEEEecCchHHHHHHHhCCCcCEEEEECCHHHHHHHHHH
Confidence 999999999999999999999999999987 6 99999999996 66678778889999999999999999999876
Q ss_pred cC----CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC-----
Q 006484 501 TK----IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG----- 570 (643)
Q Consensus 501 a~----~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~----- 570 (643)
+. ||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 258 aa~~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~ 336 (501)
T 1bxs_A 258 AGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIY-DEFVRRSVERAKKYVLGNPL 336 (501)
T ss_dssp HHHTTCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTTTTCCTTCCCEEEEEHHHH-HHHHHHHHHHHTCCCBSCTT
T ss_pred hhhccCCcEEEecCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCCCCCEEEEchhHH-HHHHHHHHHHHHhcCCCCCc
Confidence 53 9999999999999999999999999999999999998 999999999999999 899999999887642
Q ss_pred -----------------------------CEEe-cCccc--cccc--c-C-----CCCccccccccCceEEEEEeCCHHH
Q 006484 571 -----------------------------VGLF-GGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 610 (643)
Q Consensus 571 -----------------------------~~~~-g~~~~--~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~de 610 (643)
+++. |+... .++| | | ++|++++||+||||++|++|+|+||
T Consensus 337 ~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 416 (501)
T 1bxs_A 337 TPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDD 416 (501)
T ss_dssp STTCCBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCSEECSSSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEECCHHH
T ss_pred ccCCccCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCeeCCEEEecCCCCCHHHhcccccceEEEEEeCCHHH
Confidence 2232 44321 2333 5 2 3588999999999999999999999
Q ss_pred HHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 611 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 611 Ai~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
||+++|+++|||++||||+|.+++++|++++++
T Consensus 417 Ai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~a 449 (501)
T 1bxs_A 417 VIKRANNTFYGLSAGIFTNDIDKAITVSSALQS 449 (501)
T ss_dssp HHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCC
T ss_pred HHHHHhcCCCCeeEEEEcCCHHHHHHHHHhcCe
Confidence 999999999999999999999999999999875
No 21
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=100.00 E-value=1.3e-67 Score=583.57 Aligned_cols=352 Identities=17% Similarity=0.170 Sum_probs=297.7
Q ss_pred HHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 006484 269 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR-----RLQALQSQDRRKILLDVADALEANESLIKVENEADVAA 343 (643)
Q Consensus 269 ~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~-----~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~ 343 (643)
++.+|+.++++...+ .+++++++++|++||+ .|+++|.++|.++|++++++|++|.++|+++++.|+++
T Consensus 29 nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk 102 (503)
T 3iwj_A 29 NPATQNIIGDIPAAT------KEDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCGK 102 (503)
T ss_dssp CTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHGGGGTTTTSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCC
T ss_pred CCCCCCEEEEEcCCC------HHHHHHHHHHHHHHhhhcCCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 466788889988887 8999999999999999 99999999999999999999999999999998887754
Q ss_pred HHHhchhhHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccc-cccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHH
Q 006484 344 AQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQIL-KRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQ 419 (643)
Q Consensus 344 ~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~-~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~ 419 (643)
+. .++. .++..+++.+++++++.+.. +... +......+...+++|+|+|||++|+|| ||. +.++
T Consensus 103 ~~----~ea~--------~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~ 170 (503)
T 3iwj_A 103 PL----DEAA--------WDIDDVAGCFEYYADLAEKLDARQKAPVSLPMDTFKSHVLREPIGVVGLITPWNYPMLMATW 170 (503)
T ss_dssp CH----HHHH--------HHHHHHHHHHHHHHHHHHHHHHHTTEEECCSCTTEEEEEEEEECCEEEEECCSSSHHHHHHH
T ss_pred CH----HHHH--------HHHHHHHHHHHHHHHHHHHhcCCccccccccCCCccceEEEcCCceEEEECCCchHHHHHHH
Confidence 32 2221 24556666666665443221 2111 100011345678899999999999999 585 5679
Q ss_pred HHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHH
Q 006484 420 IASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQI 497 (643)
Q Consensus 420 ~~~~AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i 497 (643)
+++|||++||+||+||||.||+|+.++++++.+ + ||+|++|+|++ +.++++.|..||+||+|+||||+.+|+.|
T Consensus 171 ~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~g~~L~~~~~v~~I~FTGS~~~G~~i 246 (503)
T 3iwj_A 171 KVAPALAAGCAAILKPSELASLTCLELGEICKE----VGLPPGVLNILTGLGPEAGAPLATHPDVDKVAFTGSSATGSKI 246 (503)
T ss_dssp HHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCHHHHTHHHHTCTTCCEEEEESCHHHHHHH
T ss_pred HHHHHHhcCCeEEEECCCcchHHHHHHHHHHHH----hCcCcCeEEEEeCCcHHHHHHHhhCCCccEEEEECcHHHHHHH
Confidence 999999999999999999999999999999987 6 99999999996 55678888889999999999999999999
Q ss_pred HHhc---CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC---
Q 006484 498 KEST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG--- 570 (643)
Q Consensus 498 ~~~a---~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~--- 570 (643)
++.+ .||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 247 ~~~aa~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~ 325 (503)
T 3iwj_A 247 MTAAAQLVKPVSLELGGKSPLVVFEDVDLDKAAEWAIFGCFWTNGQICSATSRLILHESIA-TEFLNRIVKWIKNIKISD 325 (503)
T ss_dssp HHHHGGGTCCEEEECCCCEEEEECSSSCHHHHHHHHHHHHTGGGGCCTTCEEEEEEETTTH-HHHHHHHHHHHHTCCBSC
T ss_pred HHHHhcCCCCEEEECCCCCceEEcCCCCHHHHHHHHHHHHHhcCCCCcccCCeeEEcHHHH-HHHHHHHHHHHHhccCCC
Confidence 9877 38999999999999999999999999999999999998 999999999999999 899999999887652
Q ss_pred -------------------------------CEE-ecCccc----cccc--c-C-----CCCccccccccCceEEEEEeC
Q 006484 571 -------------------------------VGL-FGGPRA----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVD 606 (643)
Q Consensus 571 -------------------------------~~~-~g~~~~----~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~ 606 (643)
+++ +|+... .++| | | ++|++++||+||||++|++|+
T Consensus 326 p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~ 405 (503)
T 3iwj_A 326 PLEEGCRLGPVVSEGQYEKILKFVSNAKSEGATILTGGSRPEHLKKGFFIEPTIITDVTTNMQIWREEVFGPVLCVKTFS 405 (503)
T ss_dssp TTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCTTCCSSSCCCCEEEESCCTTSHHHHSCCCSSEEEEEEES
T ss_pred CCCCCCcccCccCHHHHHHHHHHHHHHHHCCCEEEecCCCCccCCCCceeCCeeeecCCCCchhhCceeeCceEEEEEeC
Confidence 222 344321 2333 5 2 358999999999999999999
Q ss_pred CHHHHHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 607 DVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 607 ~~deAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
|+||||+++|+++|||++||||+|.++++++++++++
T Consensus 406 ~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~a 442 (503)
T 3iwj_A 406 TEEEAIDLANDTVYGLGAAVISNDLERCERVTKAFKA 442 (503)
T ss_dssp SHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHCCS
T ss_pred CHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999875
No 22
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=100.00 E-value=1.5e-67 Score=584.63 Aligned_cols=350 Identities=19% Similarity=0.206 Sum_probs=300.0
Q ss_pred HHHc-CCceeeEEecCccccccHHhHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 006484 269 KVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESS--RRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (643)
Q Consensus 269 ~~~~-g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~--~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~ 345 (643)
+|.+ |+.++++...+ .+++++++++|++|| +.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 44 nP~t~g~~i~~~~~~~------~~dv~~av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 117 (528)
T 3u4j_A 44 SPGHAGEVVGTWPEAS------ADDVRKAVAAARKAFDAGPWPRMSGAERSRLMFKVADLILARQEELALIESLEVGKPI 117 (528)
T ss_dssp CTTSTTCEEEEEECCC------HHHHHHHHHHHHHHHHTSSGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred CCCCCCcEEEEEeCCC------HHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 3567 88899988888 899999999999999 78999999999999999999999999999999887765432
Q ss_pred HhchhhHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHH
Q 006484 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 422 (643)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~ 422 (643)
.++ ..++..+++.++++++..+.. ++..+.. ..+...+++|+|+|||++|+|| ||. +.+++++
T Consensus 118 ----~ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a 183 (528)
T 3u4j_A 118 ----AQA--------RGEIGFCADLWSYAAGQARALEGQTHNNI--GDDRLGLVLREPVGVVGIITPWNFPFIIASERVP 183 (528)
T ss_dssp ----HHH--------HHHHHHHHHHHHHHHHHHTTCCEEEECCS--CTTEEEEEEEEECCEEEEECCSSSHHHHHHHHHH
T ss_pred ----HHH--------HHHHHHHHHHHHHHHHHHHHhcCeeeccC--CCCceeEEEeccceEEEEECCCccHHHHHHHHHH
Confidence 222 235666777777776544332 3332211 1356678899999999999999 584 6779999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHh
Q 006484 423 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 500 (643)
Q Consensus 423 ~AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~ 500 (643)
|||++||+||+||||.||+|+.++++++.+ + ||+|++|+|++ +.++++.|..||+||+|+||||+.+|+.|++.
T Consensus 184 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~~ 259 (528)
T 3u4j_A 184 WAIGSGCTVVLKPSEFTSGTSIRLAELARE----AGIPDGVFNVVTGYGDPAGQVLAEDPNVDMVAFTGSVRVGTKLGEI 259 (528)
T ss_dssp HHHHTTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCCSSTTHHHHHHHCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCeEEEEcCCccHHHHHHHHHHHHH----hCCCCCeEEEEeCCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHHH
Confidence 999999999999999999999999999987 6 99999999996 66677777789999999999999999999887
Q ss_pred c---CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC------
Q 006484 501 T---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------ 570 (643)
Q Consensus 501 a---~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~------ 570 (643)
+ .||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 260 aa~~lk~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~ 338 (528)
T 3u4j_A 260 AARTVKRVGLELGGKGPQIVFADADLDAAADGIAYGVYHNAGQCCISGSRLLVQEGIR-DALMERLLDISRKVAFGDPLN 338 (528)
T ss_dssp HHTTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEGGGH-HHHHHHHHHHHHHCCEECTTS
T ss_pred HHhcCCceEEecCCCCeeEECCCCCHHHHHHHHHHHHhhcCCCCCcCCCEEEEechHH-HHHHHHHHHHHHhhcCCCCCC
Confidence 7 39999999999999999999999999999999999998 999999999999999 899999999887652
Q ss_pred ----------------------------CEE-ecCccc---cccc--c-C-----CCCccccccccCceEEEEEeCCHHH
Q 006484 571 ----------------------------VGL-FGGPRA---SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 610 (643)
Q Consensus 571 ----------------------------~~~-~g~~~~---~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~de 610 (643)
+++ +|+... .++| | | ++|++++||+||||++|++|+|+||
T Consensus 339 ~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 418 (528)
T 3u4j_A 339 ERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTPDMSIAREEIFGPVLSTLTFKTADE 418 (528)
T ss_dssp TTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSEECTTTSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHH
T ss_pred cCCccCCccCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCcEecceEEecCCCCCccccceeeccEEEEEEeCCHHH
Confidence 222 344321 2333 5 2 4689999999999999999999999
Q ss_pred HHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 611 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 611 Ai~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
||+++|+++|||++||||+|.+++++|++++++
T Consensus 419 Ai~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~a 451 (528)
T 3u4j_A 419 AVALANATEFGLSASVWSTNLETALQTIRRIRA 451 (528)
T ss_dssp HHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCC
T ss_pred HHHHHhcCCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 999999999999999999999999999999875
No 23
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=100.00 E-value=8.3e-68 Score=585.23 Aligned_cols=353 Identities=14% Similarity=0.172 Sum_probs=300.3
Q ss_pred HHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 006484 269 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR--RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 346 (643)
Q Consensus 269 ~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~ 346 (643)
+|.+|+.++++...+ .+++++++++|++||+ .|+++|..+|.++|++++++|++|.++|+++++.|++++.
T Consensus 58 nP~tg~~i~~v~~a~------~~dv~~av~aA~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 130 (517)
T 2o2p_A 58 NPTDGSVICQVSLAQ------VSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVY- 130 (517)
T ss_dssp CTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHTSGGGTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred CCCCCCEEEEEeCCC------HHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCH-
Confidence 456788899988888 8899999999999999 9999999999999999999999999999999887765432
Q ss_pred hchhhHHHHHhhcChhHHHHHHHHHHHHhccccc-cccccccc-ccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHH
Q 006484 347 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRT-ELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 422 (643)
Q Consensus 347 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~ 422 (643)
.++. ..++..+++.+++++++.+. .|...+.. ....+...+++|+|+|||++|+|| ||. +.+++++
T Consensus 131 ---~ea~-------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a 200 (517)
T 2o2p_A 131 ---TLAL-------KTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTA 200 (517)
T ss_dssp ---HHHH-------HTTTHHHHHHHHHHHHHGGGCCEEEECCCCCTTSCEEEEEEEEECCEEEEECCSSSHHHHHHHHHH
T ss_pred ---HHHH-------HHHHHHHHHHHHHHHHHHHHhcCccccccccCCCCceEEEEecCCccEEEECCCcchHHHHHHHHH
Confidence 2221 13567777888887765543 34333211 002334568899999999999999 485 6679999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHh
Q 006484 423 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 500 (643)
Q Consensus 423 ~AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~ 500 (643)
|||++||+||+||||.||+|+.++++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+.+|+.|++.
T Consensus 201 ~ALaaGNtVVlKps~~tp~ta~~l~~l~~e----aGlP~gvv~vv~g~g~~~g~~L~~~~~v~~V~FTGS~~~G~~I~~~ 276 (517)
T 2o2p_A 201 ACLAAGNTVVIKPAQVTPLTALKFAELTLK----AGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKS 276 (517)
T ss_dssp HHHHTTCEEEEECCTTCCHHHHHHHHHHHH----TTCCTTSEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCEEEEECCCccHHHHHHHHHHHHH----hCCCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEECCHHHHHHHHHH
Confidence 999999999999999999999999999988 7 99999999996 55677777789999999999999999999876
Q ss_pred cC----CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC-----
Q 006484 501 TK----IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG----- 570 (643)
Q Consensus 501 a~----~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~----- 570 (643)
+. ||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 277 aa~~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~vGdp~ 355 (517)
T 2o2p_A 277 CALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIH-NQFVQKVVEEVEKMKIGNPL 355 (517)
T ss_dssp HHHHTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHH-HHHHHHHHHHHTTCCBSCTT
T ss_pred hHHhcCCeEEEECCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCeEEEEeHHHH-HHHHHHHHHHHHhcCCCCCC
Confidence 64 9999999999999999999999999999999999997 999999999999999 899999999887642
Q ss_pred -----------------------------CEE-ecCccc--cccc--c-C-----CCCccccccccCceEEEEEeCC--H
Q 006484 571 -----------------------------VGL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD--V 608 (643)
Q Consensus 571 -----------------------------~~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~--~ 608 (643)
+++ +|+... .++| | | ++|++++||+||||++|++|+| +
T Consensus 356 ~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~~~ 435 (517)
T 2o2p_A 356 ERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDV 435 (517)
T ss_dssp STTCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSCCBCCEEEESCCTTSGGGTSCCCSSEEEEEEECTTCS
T ss_pred CCCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeccccCCCCCCeECCEEEeCCCCCChhhhccccccEEEEEEcCCCCH
Confidence 222 344322 2333 5 2 4589999999999999999999 9
Q ss_pred HHHHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 609 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 609 deAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
||||+++|+++|||++||||+|.++++++++++++
T Consensus 436 deAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~a 470 (517)
T 2o2p_A 436 DAVLSRANATEFGLASGVFTRDINKALYVSDKLQA 470 (517)
T ss_dssp HHHHHHHTCSSCCSCCEEECSBHHHHHHHHHHCCS
T ss_pred HHHHHHHhcCCCCceEEEeCCCHHHHHHHHHhcCE
Confidence 99999999999999999999999999999999875
No 24
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens}
Probab=100.00 E-value=2.5e-67 Score=574.45 Aligned_cols=368 Identities=42% Similarity=0.684 Sum_probs=287.8
Q ss_pred HHHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 006484 267 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 346 (643)
Q Consensus 267 l~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~ 346 (643)
..+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++.++
T Consensus 11 ~~~P~tg~~~~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~g~~~- 83 (463)
T 2h5g_A 11 VDLGTENLYFQSMVKPA------GPTVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAE- 83 (463)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT-
T ss_pred CcCCCCCCEEEEecCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccc-
Confidence 35677888888887777 77999999999999999999999999999999999999999999999998885432
Q ss_pred hchhhHHHHHhhcChhHHHHHHHHHHHHhccc-ccccccccccccCCCeeEEEEeeeeeeEEEEcCCCchhHHHHHHHHH
Q 006484 347 AGYAKSLVSRLALKPGKISSLAKSIRILADME-EPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAI 425 (643)
Q Consensus 347 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~~P~~~~~~~~~Al 425 (643)
.|+.....+++..+..++..+++.++++++.. +..|...+......+...+++++|+|||++|+||||+...++++|||
T Consensus 84 ~~~Gk~~~~rl~~a~~ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~nP~n~p~~~a~AL 163 (463)
T 2h5g_A 84 GRLAAPLLKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQVAALAI 163 (463)
T ss_dssp TTSCHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTSTTCEEEEEEEETTEEEEEEEEECCEEEEEESSCTTHHHHHHHHHH
T ss_pred ccCCCchhhhhhhhHHHHHHHHHHHHHHHHhhHhhcCcccccccCCCCceeEEEEEcCceEEEEecCCcHHHHHHHHHHH
Confidence 21111122233344568889999999988543 44454432211123556788999999999999999865458999999
Q ss_pred HhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEeecCcchHhHhhhCCCCccEEEeecCHHHHHHHHHhcC-CC
Q 006484 426 RSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK-IP 504 (643)
Q Consensus 426 aaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~alP~g~v~~v~~~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a~-~p 504 (643)
++||+||+||||.||+|+.++++++++++.++-|+|++|+|+++.++++.|..||+||+|+||||+.+||.|++.++ ||
T Consensus 164 aaGN~VVlKps~~tp~t~~~l~~l~~~al~~~GP~gvv~vv~g~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~~aal~p 243 (463)
T 2h5g_A 164 ASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVNTREEVEDLCRLDKMIDLIIPRGSSQLVRDIQKAAKGIP 243 (463)
T ss_dssp HHTCEEEEECCGGGHHHHHHHHHHHHHHHHTTTCGGGEEECCTTCCC-------CCCSEEEEESCHHHHHHHHHHCSSSC
T ss_pred HcCCEEEEECCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999864321179999999975567777888999999999999999999999886 99
Q ss_pred EEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCCccccceeEEEcCccCCc-hhHHHHHHHHHHcCCEEecCcccc--c
Q 006484 505 VLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACN-GALNELVVELQHEGVGLFGGPRAS--K 581 (643)
Q Consensus 505 ~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g~C~a~~rv~V~~~i~~~-~f~~~l~~~~~~~~~~~~g~~~~~--~ 581 (643)
+++|||||||+||++|||+|.|++.+++|+|.|+|+|+|++|+|||+++| | .+++++++.+.+.|++++|+.... +
T Consensus 244 v~lElGGk~p~iV~~dADl~~Aa~~i~~~~f~nGQ~C~a~~rvlV~~~i~-d~p~~~~~i~~~~~~Ga~v~~G~~~~~~g 322 (463)
T 2h5g_A 244 VMGHSEGICHMYVDSEASVDKVTRLVRDSKCEYPAACNALETLLIHRDLL-RTPLFDQIIDMLRVEQVKIHAGPKFASYL 322 (463)
T ss_dssp BCSCSCCCEEEEECTTCCTTTHHHHHHHHHHSCTTSTTSEEEEEEEGGGT-TSHHHHHHHHHHHHTTCEEEECHHHHC--
T ss_pred EEEecCCcceEEEcCCCCHHHHHHHHHHHhccCCCccccCcEEEEecccc-chHHHHHHHHHHHhCCCEEEeCCcccccC
Confidence 99999999999999999999999999999999944999999999999999 6 588888888888888887664321 2
Q ss_pred cccC-CCCccccccccCceEEEEEeCCHHHHHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 582 LLQI-PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 582 ~~pv-~~~~~~~eE~FgPvl~v~~~~~~deAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
++ + ++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.+++++|++++++
T Consensus 323 ~~-~~~~~~i~~eE~FgPvl~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~a 384 (463)
T 2h5g_A 323 TF-SPSEVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDS 384 (463)
T ss_dssp --------CCSSCCCCSSEEEEEEESSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCS
T ss_pred cc-CCCCchHHhccccCceEEEEEeCCHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHhCCe
Confidence 11 2 4689999999999999999999999999999999999999999999999999999875
No 25
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=100.00 E-value=3.3e-67 Score=574.58 Aligned_cols=357 Identities=17% Similarity=0.161 Sum_probs=287.2
Q ss_pred hHHHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 006484 266 SIIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (643)
Q Consensus 266 ~l~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~ 345 (643)
.+.++.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 9 ~~~~~~~~~~i~~v~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 82 (457)
T 3lns_A 9 HHSSGHIDDDDKHMNYLS------PAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKPK 82 (457)
T ss_dssp --------------CCCC------HHHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCH
T ss_pred cccCCCCCCeeeecCCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH
Confidence 345667788888887777 88999999999999999999999999999999999999999999999988876542
Q ss_pred HhchhhHHHHHhhcChhHHHHHHHHHHHHhcccccccccccccccCCCeeEEEEeeeeeeEEEEcCC-Cc-hhHHHHHHH
Q 006484 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RP-DALVQIASL 423 (643)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P-~~~~~~~~~ 423 (643)
.++...++..+...++++++.++.+.+. .+..... ...+...+++++|+|||++|+|| +| .+++++++|
T Consensus 83 ----~ea~~~ev~~~~~~~~~~a~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 153 (457)
T 3lns_A 83 ----DVVDLAEIGAVLHEIDFALAHLDEWVAP-VSVPSPD----IIAPSECYVVQEPYGVTYIIGPFNYPVNLTLTPLIG 153 (457)
T ss_dssp ----HHHHHHTHHHHHHHHHHHHHHHHHHTSC-EEECCCG----GGCSCEEEEEEEECCEEEEECCSSSTTHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccccc----cCCCcceEEEeecceEEEEECCCcchHHHHHHHHHH
Confidence 2333223333344555566555555421 1111111 01234678899999999999998 47 467899999
Q ss_pred HHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEeecCcchHhHhhhCCCCccEEEeecCHHHHHHHHHhc--
Q 006484 424 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (643)
Q Consensus 424 AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~alP~g~v~~v~~~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a-- 501 (643)
||++||+||+|||+.||+|+.++++++.+ +||+|++|+|+++.+.++.|.. ++||+|+||||+.+||.|++.+
T Consensus 154 ALaaGN~VVlKps~~tp~t~~~l~~l~~~----alP~gvv~vv~g~~~~~~~L~~-~~vd~V~fTGS~~~G~~i~~~aa~ 228 (457)
T 3lns_A 154 AIIGGNTCIIKPSETTPETSAVIEKIIAE----AFAPEYVAVIQGGRDENSHLLS-LPFDFIFFTGSPNVGKVVMQAAAK 228 (457)
T ss_dssp HHHTTCEEEEECCTTCHHHHHHHHHHHHH----HCCTTTEEECCCCHHHHHHHTT-SCCSEEEEESCHHHHHHHHHHHHT
T ss_pred HHHcCCEEEEECCCCChHHHHHHHHHHHH----hCCHhhEEEecCCHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHhh
Confidence 99999999999999999999999999987 4999999999975556666655 5899999999999999999877
Q ss_pred -CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHc----------
Q 006484 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE---------- 569 (643)
Q Consensus 502 -~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~---------- 569 (643)
.||+++|||||||+||++|||+|+|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++
T Consensus 229 ~l~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~p~~~~~gpl 307 (457)
T 3lns_A 229 HLTPVVLELGGKCPLIVLPDADLDQTVNQLMFGKFINSGQTXIAPDYLYVHYSVK-DALLERLVERVKTELPEINSTGKL 307 (457)
T ss_dssp TTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCTTSEEEEEEEGGGH-HHHHHHHHHHHHHHCCSTTTTCCC
T ss_pred ccCceEEECCCCCCCeECCCCCHHHHHHHHHHHHHHhCCCCccCCceEEEcHHHH-HHHHHHHHHHHHhcCCCcccccCC
Confidence 39999999999999999999999999999999999998 999999999999999 89999999988775
Q ss_pred -----------------CCEEecCccc-cccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHHHHHc-cCCCc
Q 006484 570 -----------------GVGLFGGPRA-SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQ-HGSAH 622 (643)
Q Consensus 570 -----------------~~~~~g~~~~-~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~deAi~~aN~-~~~GL 622 (643)
+.-++|+... .+++ | | ++|++++||+||||++|++|+|+||||+++|+ ++|||
T Consensus 308 i~~~~~~rv~~~i~~a~~~~~~gg~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~~gL 387 (457)
T 3lns_A 308 VTERQVQRLVSLLEATQGQVLVGSQADVSKRALSATVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPKPL 387 (457)
T ss_dssp SSHHHHHHHHHHHHHCCSEEEECCCEEGGGTEECCEEEESCCTTSGGGSSCCCSSEEEEEEESCHHHHHHHHHHHSCSCS
T ss_pred CCHHHHHHHHHHHHhcCCeEEeCCccCCCCceeCCEEEecCCCCChhhcCcccCcEEEEEEeCCHHHHHHHHHcCCCCCe
Confidence 2223455432 2333 5 2 36899999999999999999999999999999 99999
Q ss_pred eeEEEecCHHHHHHHHHhcCC
Q 006484 623 TDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 623 ~a~v~t~d~~~~~~~~~~l~~ 643 (643)
++||||+|.+++++|++++++
T Consensus 388 ~a~v~t~d~~~a~~~~~~l~a 408 (457)
T 3lns_A 388 AVYVFGKDMDVAKGIINQIQS 408 (457)
T ss_dssp EEEEECSCHHHHHHHHHTSCC
T ss_pred EEEEECCCHHHHHHHHHhCCc
Confidence 999999999999999999875
No 26
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=100.00 E-value=4.9e-67 Score=580.58 Aligned_cols=352 Identities=17% Similarity=0.202 Sum_probs=297.9
Q ss_pred HHHH-cCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 006484 268 IKVL-EGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 346 (643)
Q Consensus 268 ~~~~-~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~ 346 (643)
.+|. +|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 56 ~nP~~t~~~i~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 128 (516)
T 1uzb_A 56 LNPSAPSEVVGTTAKAG------KAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNW- 128 (516)
T ss_dssp EETTEEEEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred ECCCCCCcEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 5567 477888887777 88999999999999999999999999999999999999999999999887765432
Q ss_pred hchhhHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEEeeeeeeEEEEcCCC-c-hhHHHHHHH
Q 006484 347 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFESR-P-DALVQIASL 423 (643)
Q Consensus 347 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~~-P-~~~~~~~~~ 423 (643)
.++. .++..+++.++++++..+. .+...+... ..+...+++|+|+|||++|+||| | .+++++++|
T Consensus 129 ---~ea~--------~ev~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ 196 (516)
T 1uzb_A 129 ---VEAS--------ADVAEAIDFIEYYARAALRYRYPAVEVVP-YPGEDNESFYVPLGAGVVIAPWNFPVAIFTGMIVG 196 (516)
T ss_dssp ---HHHH--------HHHHHHHHHHHHHHHHHGGGCSSCCCCCC-CTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHH
T ss_pred ---HHHH--------HHHHHHHHHHHHHHHHHHHhcCCcccccC-CCCceEEEEEeccceEEEECCCccHHHHHHHHHHH
Confidence 2221 3566667777766643322 222211011 13456788999999999999995 9 567899999
Q ss_pred HHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhc
Q 006484 424 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 501 (643)
Q Consensus 424 AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a 501 (643)
||++||+||+|||+.||+|+.++++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+.+|+.|++.+
T Consensus 197 ALaaGN~VVlKps~~tp~ta~~l~~l~~e----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~I~FTGS~~~G~~i~~~a 272 (516)
T 1uzb_A 197 PVAVGNTVIAKPAEDAVVVGAKVFEIFHE----AGFPPGVVNFLPGVGEEVGAYLVEHPRIRFINFTGSLEVGLKIYEAA 272 (516)
T ss_dssp HHHTTCEEEEECCGGGHHHHHHHHHHHHH----HTCCTTSEEECCCSSSHHHHHHHTCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCeEEEeCCCCCHHHHHHHHHHHHH----hCCCcCeEEEEeCCCchhhhhhhcCCCcCEEEecCCHHHHHHHHHHh
Confidence 99999999999999999999999999987 6 99999999996 666777777899999999999999999998765
Q ss_pred ---------CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcCC
Q 006484 502 ---------KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV 571 (643)
Q Consensus 502 ---------~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~~ 571 (643)
.||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 273 a~~~~~~~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~ 351 (516)
T 1uzb_A 273 GRLAPGQTWFKRAYVETGGKNAIIVDETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQGAY-EPVLERVLKRAERLSV 351 (516)
T ss_dssp TSCCTTCCSCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHH-HHHHHHHHHHHTTCCB
T ss_pred hhccccccccceeEEecCCccceeECCCCCHHHHHHHHHHHHHhCCCCccccCcEEEEchHHH-HHHHHHHHHHHHhccC
Confidence 48999999999999999999999999999999999997 999999999999999 8999999998876431
Q ss_pred --------------------------------EE-ecCcc--ccccc--c-C-----CCCccccccccCceEEEEEeCCH
Q 006484 572 --------------------------------GL-FGGPR--ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 608 (643)
Q Consensus 572 --------------------------------~~-~g~~~--~~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~ 608 (643)
++ +|+.. ..++| | | ++|++++||+||||++|++|+|+
T Consensus 352 G~p~~~~~~Gpli~~~~~~~v~~~i~~a~~~G~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 431 (516)
T 1uzb_A 352 GPAEENPDLGPVVSAEQERKVLSYIEIGKNEGQLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKDF 431 (516)
T ss_dssp SCGGGCCSBCCCSCHHHHHHHHHHHHHHTTTSEEEECCSBCSSSSCCBCCEEEESCCTTSGGGTSCCCSSEEEEEEESSH
T ss_pred CCCccccccCCCCCHHHHHHHHHHHHHHHHCCCEEECCccCCCCCcEECCEEEECCCCCCHhhhccccCceEEEEEeCCH
Confidence 22 45543 12333 5 2 35899999999999999999999
Q ss_pred HHHHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 609 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 609 deAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
||||+++|+++|||++||||+|.++++++++++++
T Consensus 432 ~eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~a 466 (516)
T 1uzb_A 432 AEALEVANDTPYGLTGGVYSRKREHLEWARREFHV 466 (516)
T ss_dssp HHHHHHHHCSSCCSEEEEECSCHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCE
Confidence 99999999999999999999999999999999875
No 27
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=100.00 E-value=2.3e-67 Score=584.32 Aligned_cols=350 Identities=18% Similarity=0.217 Sum_probs=299.3
Q ss_pred HHHHc-CCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 006484 268 IKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 346 (643)
Q Consensus 268 ~~~~~-g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~ 346 (643)
.+|.+ |+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 56 ~nP~t~~~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 128 (538)
T 3qan_A 56 WNPARKDQLVGSVSKAN------QDLAEKAIQSADEAFQTWRNVNPEERANILVKAAAIIRRRKHEFSAWLVHEAGKPW- 128 (538)
T ss_dssp ECSSSTTCEEEEEECBC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCH-
T ss_pred ECCCCCCcEEEEEcCCC------HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 56778 88889988888 89999999999999999999999999999999999999999999999887765432
Q ss_pred hchhhHHHHHhhcChhHHHHHHHHHHHHhcc-cc-cccccccccccCCCeeEEEEeeeeeeEEEEcCCC-ch-hHHHHHH
Q 006484 347 AGYAKSLVSRLALKPGKISSLAKSIRILADM-EE-PIGQILKRTELADGLILEKTSCPLGVLLIVFESR-PD-ALVQIAS 422 (643)
Q Consensus 347 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~-~~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~~-P~-~~~~~~~ 422 (643)
.++. .++..+++.++++++. .+ ..++..+. ..+...+++++|+|||++|+||| |. +.+++++
T Consensus 129 ---~ea~--------~Ev~~~~~~l~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a 194 (538)
T 3qan_A 129 ---KEAD--------ADTAEAIDFLEYYARQMIELNRGKEILS---RPGEQNRYFYTPMGVTVTISPWNFALAIMVGTAV 194 (538)
T ss_dssp ---HHHH--------HHHHHHHHHHHHHHHHHHHHHTCBCCCC---CTTEEEEEEEEECCEEEEECCSTTTTHHHHHHHH
T ss_pred ---HHHH--------HHHHHHHHHHHHHHHHHHHhcCCeeecc---cCCcceeeecCCCcEEEEECCCchHHHHHHHHHH
Confidence 2221 2566667777776654 22 22333321 23566788999999999999994 84 6789999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHh
Q 006484 423 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 500 (643)
Q Consensus 423 ~AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~ 500 (643)
|||++||+||+||||.||+|+.++++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+.+|+.|++.
T Consensus 195 ~ALaaGN~VVlKps~~tp~ta~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~~ 270 (538)
T 3qan_A 195 APIVTGNTVVLKPASTTPVVAAKFVEVLED----AGLPKGVINYVPGSGAEVGDYLVDHPKTSLITFTGSKDVGVRLYER 270 (538)
T ss_dssp HHHHTTCEEEEECCTTSHHHHHHHHHHHHH----TTCCTTSEEECCBCTTTTHHHHHHCTTEEEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCEEEEECCCccHHHHHHHHHHHHH----hCCCCCeEEEEecCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHH
Confidence 999999999999999999999999999987 6 99999999995 66677777789999999999999999999887
Q ss_pred c---------CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC
Q 006484 501 T---------KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG 570 (643)
Q Consensus 501 a---------~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~ 570 (643)
+ .||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 271 aa~~~~~~~~lkpv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~ 349 (538)
T 3qan_A 271 AAVVRPGQNHLKRVIVEMGGKDTVVVDRDADLDLAAESILVSAFGFSGQKCSAGSRAVIHKDVY-DEVLEKTVALAKNLT 349 (538)
T ss_dssp HTSCCTTCCSCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEETTTH-HHHHHHHHHHHTTCC
T ss_pred hhhccccccccccEEEecCCCCceEECCCCCHHHHHHHHHHHHHhcCCCCCccCceeEEehHHH-HHHHHHHHHHHHhcc
Confidence 6 58999999999999999999999999999999999998 999999999999999 899999999887653
Q ss_pred C---------------------------------EE-ecCccc--cccc--c-C-----CCCccccccccCceEEEEEeC
Q 006484 571 V---------------------------------GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVD 606 (643)
Q Consensus 571 ~---------------------------------~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~ 606 (643)
+ ++ +|+... .++| | | ++|++++||+||||++|++|+
T Consensus 350 vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~G~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~V~~~~ 429 (538)
T 3qan_A 350 VGDPTNRDNYMGPVIDEKAFEKIMSYIEIGKKEGRLMTGGEGDSSTGFFIQPTIIADLDPEAVIMQEEIFGPVVAFSKAN 429 (538)
T ss_dssp BSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHHSEEEECCCEECSSSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEES
T ss_pred CCCCCCCCCCCcCccCHHHHHHHHHHHHHHHHCCeEEeCCCcCCCCCceeCCeeeecCCCCChhhCCCcCCcEEEEEEeC
Confidence 1 11 233221 2333 5 2 468999999999999999999
Q ss_pred CHHHHHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 607 DVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 607 ~~deAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
|+||||+++|+++|||++||||+|.++++++++++++
T Consensus 430 ~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~a 466 (538)
T 3qan_A 430 DFDHALEIANNTEYGLTGAVITRNRAHIEQAKREFHV 466 (538)
T ss_dssp SHHHHHHHHHCSSEESEEEEECSCHHHHHHHHHHCCC
T ss_pred CHHHHHHHHhcCCCCcEEEEECCCHHHHHHHHHhCCe
Confidence 9999999999999999999999999999999999875
No 28
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=2.8e-67 Score=581.86 Aligned_cols=351 Identities=16% Similarity=0.184 Sum_probs=303.7
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 47 ~nP~tg~~i~~~~~~~------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 118 (515)
T 2d4e_A 47 LDPATNEVLGVAARGG------EREVDRAAKAAHEAFQRWSRTKAKERKRYLLRIAELIEKHADELAVMECLDAGQVL-- 118 (515)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4567888889988887 88999999999999999999999999999999999999999999999887765432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeeEEEEeeeeeeEEEEcCC-Cc-hhHHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RP-DALVQIASLA 424 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P-~~~~~~~~~A 424 (643)
.++ ..++..+++.+++++++.+.. |...+.. ..+...+++|+|+|||++|+|| || .+.+++++||
T Consensus 119 --~ea--------~~ev~~~~~~l~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 186 (515)
T 2d4e_A 119 --RIV--------RAQVARAAENFAFYAEYAEHAMEDRTFPV--DRDWLYYTVRVPAGPVGIITPWNAPLMLSTWRIAPA 186 (515)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHTTGGGTTCEEECCB--TTTEEEEEEEEECCCEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEEecCCceEEECCCCchhhhhhhhhhHH
Confidence 222 136777888899888765543 4433211 2345678899999999999999 58 4678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhcC
Q 006484 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 502 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a~ 502 (643)
|++||+||+||||.||+|+.++++++++ + ||+|++|+|+| +.++++.|..||+||+|+||||+.+|+.|++.+.
T Consensus 187 LaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~I~~~aa 262 (515)
T 2d4e_A 187 LAFGNTVVLKPAEWSPFTATKLAEILKE----ADLPPGVFNLVQGFGEEAGAALVAHPLVPLLTLTGETETGKIVMRNAA 262 (515)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHHG
T ss_pred HHcCCeeeecCCCCcHHHHHHHHHHHHH----hCCCcCeEEEEeCCchHHHHHHHhCCCcCEEEEeCcHHHHHHHHHHHh
Confidence 9999999999999999999999999987 7 99999999995 4567777888999999999999999999998774
Q ss_pred ---CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC--------
Q 006484 503 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 570 (643)
Q Consensus 503 ---~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~-------- 570 (643)
||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 263 ~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~ 341 (515)
T 2d4e_A 263 DHLKRLSPELGGKSPALVFADADLERALDAVVFQIFSFNGERCTASSRLLVEEKIF-EDFVGKVVERARAIRVGHPLDPE 341 (515)
T ss_dssp GGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEEHHHH-HHHHHHHHHHHHHCCBCCTTSTT
T ss_pred hcCCceEecCCCcCeEEEcCCCCHHHHHHHHHHHHHhcCCCCCCCCeEEEEehhHH-HHHHHHHHHHHhhcccCCccccc
Confidence 9999999999999999999999999999999999998 999999999999999 899999999887753
Q ss_pred --------------------------CEE-ecCccc----------cccc--c-C----CCCccccccccCceEEEEEeC
Q 006484 571 --------------------------VGL-FGGPRA----------SKLL--Q-I----PETRLFHHEYNSMVCTVEIVD 606 (643)
Q Consensus 571 --------------------------~~~-~g~~~~----------~~~~--p-v----~~~~~~~eE~FgPvl~v~~~~ 606 (643)
+++ +|+... .++| | | ++|++++||+||||++|++|+
T Consensus 342 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~~~~~~~g~~~~PTvl~~~~~~~i~~eEiFGPVl~v~~~~ 421 (515)
T 2d4e_A 342 TEVGPLIHPEHLQRVLGYVEAGKREGARLLVGGERAKTSFRGEDLSRGNYLLPTVFVGENHMKIAQEEIFGPVLVAIPFK 421 (515)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCBCTTSCBCTTTTCBCCEEEECCTTSHHHHSCCCSSEEEEEEES
T ss_pred CccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCccccccccccccCCCceeCCEEEeCCCCChhhhccccCCceEEEeeC
Confidence 222 344321 2333 5 3 357899999999999999999
Q ss_pred CHHHHHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 607 DVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 607 ~~deAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
|+||||+++|+++|||++||||+|.++++++++++++
T Consensus 422 ~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~a 458 (515)
T 2d4e_A 422 DEEEALRKANDTKYGLAAYVFTRDLERAHRLALELEA 458 (515)
T ss_dssp SHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCS
T ss_pred CHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCe
Confidence 9999999999999999999999999999999999875
No 29
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=100.00 E-value=1.2e-66 Score=573.35 Aligned_cols=351 Identities=18% Similarity=0.206 Sum_probs=302.6
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 27 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 98 (479)
T 2imp_A 27 VNPATEAVISRIPDGQ------AEDARKAIDAAERAQPEWEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQ-- 98 (479)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4467788899988887 88999999999999999999999999999999999999999999999887765432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~A 424 (643)
.++ ..++..+++.++++++..+. .+...+.. ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 99 --~ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 166 (479)
T 2imp_A 99 --QLA--------EVEVAFTADYIDYMAEWARRYEGEIIQSD--RPGENILLFKRALGVTTGILPWNFPFFLIARKMAPA 166 (479)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHTTTTTCCCEEECCS--STTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhhCCccccC--CCCceeEEEEeccceEEEECCCchHHHHHHHHHHHH
Confidence 222 24678888899988876543 34432211 1345678899999999999999 485 667999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhc-
Q 006484 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a- 501 (643)
|++||+||+|||+.||+|+.++++++++ + ||+|++|+|++ +.++++.|..||+||+|+||||+.+|+.|++.+
T Consensus 167 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~~aa 242 (479)
T 2imp_A 167 LLTGNTIVIKPSEFTPNNAIAFAKIVDE----IGLPRGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKIMATAA 242 (479)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTEEEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCccchHHHHHHHHHHHH----hCCCcCeEEEEECCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHHHHh
Confidence 9999999999999999999999999987 6 99999999995 556777777899999999999999999998877
Q ss_pred --CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC--------
Q 006484 502 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 570 (643)
Q Consensus 502 --~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~-------- 570 (643)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 243 ~~~~~v~lElGGk~p~iV~~dADl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~g~p~~~~ 321 (479)
T 2imp_A 243 KNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVYVQKGIY-DQFVNRLGEAMQAVQFGNPAERN 321 (479)
T ss_dssp TTTCEEEEECCCCCEEEECTTSCHHHHHHHHHTTSSTTTTCCSSSCSEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTTCS
T ss_pred ccCCcEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhhcCCCcCcCCcEEEEehhhH-HHHHHHHHHHHHhcccCCccccC
Confidence 39999999999999999999999999999999999998 999999999999999 899999999887542
Q ss_pred ---------------------------CEE-ecCccc--ccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHH
Q 006484 571 ---------------------------VGL-FGGPRA--SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 612 (643)
Q Consensus 571 ---------------------------~~~-~g~~~~--~~~-~-p-v-----~~~~~~~eE~FgPvl~v~~~~~~deAi 612 (643)
+++ +|+... .++ + | | ++|++++||+||||++|++|+|+||||
T Consensus 322 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~Ptvl~~v~~~~~~~~eEiFGPVl~v~~~~~~~eAi 401 (479)
T 2imp_A 322 DIAMGPLINAAALERVEQKVARAVEEGARVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAI 401 (479)
T ss_dssp SCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCCCSSSCCCCCEEEESCCTTSGGGGSCCCSSEEEEEEESSHHHHH
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHHCCCEEEECCcccCCCCceECCEEEeCCCCCCHHHhCccCCceEEEEeeCCHHHHH
Confidence 233 355331 233 3 5 2 358899999999999999999999999
Q ss_pred HHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 613 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 613 ~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
+++|+++|||++||||+|.++++++++++++
T Consensus 402 ~~aN~~~~gL~a~v~t~d~~~~~~~~~~l~~ 432 (479)
T 2imp_A 402 SMANDSDYGLTSSIYTQNLNVAMKAIKGLKF 432 (479)
T ss_dssp HHHHCSSEESEEEEECCCHHHHHHHHHHCCS
T ss_pred HHHhcCCCCeeEEEECCCHHHHHHHHHhCCE
Confidence 9999999999999999999999999999875
No 30
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=100.00 E-value=5.8e-67 Score=577.88 Aligned_cols=355 Identities=16% Similarity=0.181 Sum_probs=301.3
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|++++..|++++.
T Consensus 42 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 113 (500)
T 2j6l_A 42 YCPANNEPIARVRQAS------VADYEETVKKAREAWKIWADIPAPKRGEIVRQIGDALREKIQVLGSLVSLEMGKIL-- 113 (500)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH--
Confidence 3466788889888887 88999999999999999999999999999999999999999999998876654321
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEEeeeeeeEEEEcCCC-ch-hHHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFESR-PD-ALVQIASLA 424 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~~-P~-~~~~~~~~A 424 (643)
.++ ..++..+++.++++++..+. .|...+. . ..+...+++++|+|||++|+||| |. +++++++||
T Consensus 114 --~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~-~-~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 181 (500)
T 2j6l_A 114 --VEG--------VGEVQEYVDICDYAVGLSRMIGGPILPS-E-RSGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAIA 181 (500)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHTTTCCCBEECC-S-STTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccc-c-CCCceeEEEEecccEEEEECCCcchhhHHHHHHHHH
Confidence 122 23566677777777654432 2332221 1 12344577899999999999995 84 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecCcchHhHhhhCCCCccEEEeecCHHHHHHHHHhc--
Q 006484 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a-- 501 (643)
|++||+||+|||+.||+|+.++++++.+++.++ ||+|++|+|+|+.++++.|..||+||+|+||||+.+||.|++.+
T Consensus 182 LaaGN~VVlKps~~tp~t~~~l~~l~~~al~~aGlP~gvv~vv~g~~~~g~~L~~~~~vd~I~FTGS~~~g~~i~~~aa~ 261 (500)
T 2j6l_A 182 MICGNVCLWKGAPTTSLISVAVTKIIAKVLEDNKLPGAICSLTCGGADIGTAMAKDERVNLLSFTGSTQVGKQVGLMVQE 261 (500)
T ss_dssp HHTTCEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCGGGEEEECCSHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHH
T ss_pred HHhCCEEEEECCCccHHHHHHHHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHhcCCCcCEEEEECCHHHHHHHHHHhcc
Confidence 999999999999999999999999999988889 99999999997656777777899999999999999999999876
Q ss_pred -CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC---------
Q 006484 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG--------- 570 (643)
Q Consensus 502 -~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~--------- 570 (643)
.+|+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 262 ~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~~ 340 (500)
T 2j6l_A 262 RFGRSLLELGGNNAIIAFEDADLSLVVPSALFAAVGTAGQRCTTARRLFIHESIH-DEVVNRLKKAYAQIRVGNPWDPNV 340 (500)
T ss_dssp TTCEEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTCEEEEEEETTTH-HHHHHHHHHHHHTCCBSCTTSTTC
T ss_pred CCCceEEEcCCCCceEECCCCCHHHHHHHHHHHHHhcCCCCcCCCcEEEEcHHHH-HHHHHHHHHHhhhcccCCcccCCC
Confidence 49999999999999999999999999999999999998 999999999999999 899999999988753
Q ss_pred -------------------------CEE-ecCccc--ccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHHHH
Q 006484 571 -------------------------VGL-FGGPRA--SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 614 (643)
Q Consensus 571 -------------------------~~~-~g~~~~--~~~-~-p-v-----~~~~~~~eE~FgPvl~v~~~~~~deAi~~ 614 (643)
.++ +|+... .++ + | | ++|++++||+||||++|++|+|+||||++
T Consensus 341 ~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 420 (500)
T 2j6l_A 341 LYGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGKVMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFKFQNEEEVFAW 420 (500)
T ss_dssp CBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSSCBCCEEEESCCTTCHHHHSCCSSSEEEEEEECCHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHHCCCEEEECCcccCCCCCEEcCEEEECCCCcChhhcCcccCceEEEEeeCCHHHHHHH
Confidence 222 344331 233 3 5 2 35899999999999999999999999999
Q ss_pred HHccCCCceeEEEecCHHHHHHHH--HhcCC
Q 006484 615 IHQHGSAHTDCIVAEDQKVAETFL--CQVDR 643 (643)
Q Consensus 615 aN~~~~GL~a~v~t~d~~~~~~~~--~~l~~ 643 (643)
+|+++|||++||||+|.+++++|+ +++++
T Consensus 421 aN~~~~gL~a~v~t~d~~~a~~~~~~~~~~~ 451 (500)
T 2j6l_A 421 NNEVKQGLSSSIFTKDLGRIFRWLGPKGSDC 451 (500)
T ss_dssp HHTSSCCSEEEEECCCHHHHHHHHSTTSCCS
T ss_pred HhCCCCCcEEEEECCCHHHHHHHHhhccCCe
Confidence 999999999999999999999999 55764
No 31
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=100.00 E-value=3.2e-67 Score=578.45 Aligned_cols=350 Identities=15% Similarity=0.150 Sum_probs=293.9
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 46 ~nP~tg~~i~~v~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 117 (497)
T 3i44_A 46 IDPSTEEACAVISLGS------TRDADKAINAAKKAFQTWKTTSPHERLGFVEKILEIYEKRSSDMAKTISMEMGAPI-- 117 (497)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4577888889888887 89999999999999999999999999999999999999999999999887765432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhcccccccccccccccCCCeeEEEE-eeeeeeEEEEcCC-Cch-hHHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKT-SCPLGVLLIVFES-RPD-ALVQIASLA 424 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~PlGvv~~I~p~-~P~-~~~~~~~~A 424 (643)
.++.. .++..+++.++++++..+.. ..+. ....+...+++ ++|+|||++|+|| ||. +.+++++||
T Consensus 118 --~~a~~-------~ev~~~~~~~~~~a~~~~~~--~~~~-~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~A 185 (497)
T 3i44_A 118 --DMALN-------AQTATGSSHIRNFIKAYKEF--SFQE-ALIEGNEQAILHYDAIGVVGLITPWNWPMNQVTLKVIPA 185 (497)
T ss_dssp --HHHHH-------THHHHHHHHHHHHHHHHHHC--CSEE-ESSTTCSSCEEEEEECCEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHHHH-------HHHHHHHHHHHHHHHHhhcc--cccc-cccCCceeEEEeecCceEEEEECCCcchHHHHHHHHHHH
Confidence 22211 24555566666555322111 0000 00113334567 9999999999998 484 677999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhc-
Q 006484 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a- 501 (643)
|++||+||+|||+.||+|+.++++++.+ + ||+|++|+|++ +.++++.|..||+||+|+||||+.+|+.|++.+
T Consensus 186 LaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvvnvv~g~~~~~g~~L~~hp~v~~I~FTGS~~~G~~i~~~aa 261 (497)
T 3i44_A 186 LLAGCTMVLKPSEIAPLSAMLFAEILDE----AALPSGVFNLINGDGANVGSYLSAHPDLEMISFTGSTRAGKDISKNAS 261 (497)
T ss_dssp HHHTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCcccHHHHHHHHHHHHH----hCcCCCeEEEEeCCChHHHHHHHhCCCcCEEEEeCcHHHHHHHHHHHh
Confidence 9999999999999999999999999987 7 99999999995 666787787899999999999999999999877
Q ss_pred --CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC--------
Q 006484 502 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 570 (643)
Q Consensus 502 --~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~-------- 570 (643)
.||+++|||||||+||++||| |.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 262 ~~~k~v~lElGGk~p~IV~~dAD-~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~vG~p~~~~ 339 (497)
T 3i44_A 262 NTLKRVCLELGGKGANIIFADAD-IDALQRGVRHCFYNSGQSCNAPTRMLVEQAIY-DKAIKTAKDIAEKTQVGPGHQTG 339 (497)
T ss_dssp TTTCEEEEECCCCCEEEECTTSC-TTHHHHHHHHHHGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHHCCBCCTTSCS
T ss_pred hcCCceeeccCCCCceEECCChh-HHHHHHHHHHHHhcCCCCcccCCEEEEcHHHH-HHHHHHHHHHHHhccCCCCCCCC
Confidence 399999999999999999999 9999999999999998 999999999999999 899999999988653
Q ss_pred --------------------------CEE-ecCc-cc----cccc--c-C-----CCCccccccccCceEEEEEeCCHHH
Q 006484 571 --------------------------VGL-FGGP-RA----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 610 (643)
Q Consensus 571 --------------------------~~~-~g~~-~~----~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~de 610 (643)
+++ +|+. .. .++| | | ++|++++||+||||++|++|+|+||
T Consensus 340 ~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 419 (497)
T 3i44_A 340 NHIGPVVSKEQYDKIQDLIQSGIDEGATLVTGGTGLPMGMERGYYVRPTVFADVKPHMRIFREEIFGPVLSLLPFNTEDE 419 (497)
T ss_dssp SCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSSCCTTCCSSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHH
T ss_pred CccCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCcCCCcCCCCcEECCEEEEeCCCCCHHHcCcccCceEEEEecCCHHH
Confidence 222 3442 11 2333 5 2 4689999999999999999999999
Q ss_pred HHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 611 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 611 Ai~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
||+++|+++|||++||||+|.++++++++++++
T Consensus 420 Ai~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~a 452 (497)
T 3i44_A 420 AVTLANDTEYGLTNYIQSQDRSKCRRIAAQVRS 452 (497)
T ss_dssp HHHHHHCSSCCSEEEEECSCHHHHHHHHHHSCC
T ss_pred HHHHHhCCCCCcEEEEECCCHHHHHHHHHhCCc
Confidence 999999999999999999999999999999875
No 32
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=100.00 E-value=7.9e-67 Score=575.12 Aligned_cols=351 Identities=17% Similarity=0.156 Sum_probs=302.3
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 30 ~~P~t~~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~-- 101 (481)
T 3jz4_A 30 TNPANGDKLGSVPKMG------ADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPL-- 101 (481)
T ss_dssp ECTTTCCEEEEEECBC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH--
Confidence 3467788899988877 88999999999999999999999999999999999999999999999887765432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~A 424 (643)
.++ ..++..+++.+++++.... ..+...+. ...+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 102 --~~a--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 169 (481)
T 3jz4_A 102 --AEA--------KGEISYAASFIEWFAEEGKRIYGDTIPG--HQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPA 169 (481)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHGGGCCEEEECC--SSTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccc--cCCCceEEEEEcCccEEEEECCCcchHHHHHHHHHHH
Confidence 122 2467778888888876543 33433321 12356778899999999999998 484 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhcC
Q 006484 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 502 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a~ 502 (643)
|++||+||+||||.||+|+.++++++.+ + ||+|++|+|++ +.++++.|..||+||+|+||||+.+|+.|++.+.
T Consensus 170 LaaGN~VVlKps~~tp~~~~~l~~l~~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~fTGS~~~g~~i~~~aa 245 (481)
T 3jz4_A 170 LAAGCTMVLKPASQTPFSALALAELAIR----AGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQCA 245 (481)
T ss_dssp HHHTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTTEEECCBCTHHHHHHHHHCTTEEEEEEESCHHHHHHHHHHHT
T ss_pred HHcCCEEEEECCCCCcHHHHHHHHHHHH----hCcCCCeEEEEeCCChHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHh
Confidence 9999999999999999999999999987 6 99999999995 5667777888999999999999999999998774
Q ss_pred ---CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC--------
Q 006484 503 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 570 (643)
Q Consensus 503 ---~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~-------- 570 (643)
+|+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 246 ~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 324 (481)
T 3jz4_A 246 KDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVY-DRFAEKLQQAMSKLHIGDGLDNG 324 (481)
T ss_dssp TTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEGGGH-HHHHHHHHHHHTTCCBSCTTSTT
T ss_pred hcCCceEEecCCCCeEEEcCCCCHHHHHHHHHHHHHHhCCCcccCCcEEEEeHHHH-HHHHHHHHHHHHhccCCCCccCc
Confidence 9999999999999999999999999999999999998 999999999999999 899999999887652
Q ss_pred --------------------------CEE-ecCcc--cccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHHH
Q 006484 571 --------------------------VGL-FGGPR--ASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 613 (643)
Q Consensus 571 --------------------------~~~-~g~~~--~~~~-~-p-v-----~~~~~~~eE~FgPvl~v~~~~~~deAi~ 613 (643)
+++ +|+.. ..++ + | | ++|++++||+||||++|++|+|+||||+
T Consensus 325 ~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 404 (481)
T 3jz4_A 325 VTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIA 404 (481)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEESCCTTSGGGTSCCCSSEEEEEEECCHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHHHHCCCEEEeCCcccCCCCceeccEEEecCCCCcccccccccCceEEEEEECCHHHHHH
Confidence 222 24432 1223 3 5 2 4689999999999999999999999999
Q ss_pred HHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 614 HIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 614 ~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
++|+++|||++||||+|.++++++++++++
T Consensus 405 ~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~ 434 (481)
T 3jz4_A 405 QANDTEFGLAAYFYARDLSRVFRVGEALEY 434 (481)
T ss_dssp HHHCSSCCSEEEEECCBHHHHHHHHHHCCC
T ss_pred HHhcCCCCceEEEECCCHHHHHHHHHhCCe
Confidence 999999999999999999999999999875
No 33
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=100.00 E-value=5.7e-67 Score=577.56 Aligned_cols=351 Identities=15% Similarity=0.161 Sum_probs=301.8
Q ss_pred HHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 269 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR-RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 269 ~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~-~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
+|.+|+.++++...+ .+++++++++|++||+ .|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 38 nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 109 (501)
T 1uxt_A 38 SPIDLATIAKVISPS------REEVERTLDVLFKRGRWSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPK-- 109 (501)
T ss_dssp CTTTCCEEEEEECCC------HHHHHHHHHHHHHTHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred CCCCCCEEEEEeCCC------HHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 356788889988887 8899999999999999 9999999999999999999999999999999887765432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCC--CeeEEEEeeeeeeEEEEcCC-Cc-hhHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELAD--GLILEKTSCPLGVLLIVFES-RP-DALVQIAS 422 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~--~~~~~~~~~PlGvv~~I~p~-~P-~~~~~~~~ 422 (643)
.++ ..++..+++.++++++..+.. ++..+....+. +...+++|+|+|||++|+|| || .+.+++++
T Consensus 110 --~ea--------~~Ev~~~~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~ 179 (501)
T 1uxt_A 110 --SAA--------VGEVKAAVDRLRLAELDLKKIGGDYIPGDWTYDTLETEGLVRREPLGVVAAITPFNYPLFDAVNKIT 179 (501)
T ss_dssp --HHH--------HHHHHHHHHHHHTGGGGGGGTCCEEEESTTSSTTTTEEEEEEEEECSEEEEECCTTSTTHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccccccCCCcCceEEEEEeeccEEEEECCCccHHHHHHHHHH
Confidence 222 236778888899888765543 43332110122 44678899999999999998 48 46779999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecCcchHhHhhhCCCCccEEEeecCHHHHHHHHHhc
Q 006484 423 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 501 (643)
Q Consensus 423 ~AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a 501 (643)
|||++||+||+||||.||+|+.++++++++ + ||+|++|+|+|..++++.|..||+||+|+||||+.+|+.|++.+
T Consensus 180 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~g~~L~~~~~vd~I~FTGS~~~G~~i~~~a 255 (501)
T 1uxt_A 180 YSFIYGNAVVVKPSISDPLPAAMAVKALLD----AGFPPDAIALLNLPGKEAEKIVADDRVAAVSFTGSTEVGERVVKVG 255 (501)
T ss_dssp HHHHTTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHTCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHcCCEEEEeCCCCchHHHHHHHHHHHH----hCCCcCeEEEEeCCcHHHHHHHhCCCcCEEEEeCcHHHHHHHHHhc
Confidence 999999999999999999999999999987 7 99999999996337788888899999999999999999999887
Q ss_pred C-CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC---------
Q 006484 502 K-IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG--------- 570 (643)
Q Consensus 502 ~-~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~--------- 570 (643)
. ||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 256 al~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~~ 334 (501)
T 1uxt_A 256 GVKQYVMELGGGDPAIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVY-GKLVEEVAKRLSSLRVGDPRDPTV 334 (501)
T ss_dssp CSSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTSTTC
T ss_pred CCCeEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhcCCCCCCcCCcEEEeccchH-HHHHHHHHHHHHhccCCCccccCC
Confidence 5 9999999999999999999999999999999999998 999999999999999 899999999988653
Q ss_pred -------------------------CEE-ecCccccc-c-c-c-C----C----CCccccccccCceEEEEEeCCHHHHH
Q 006484 571 -------------------------VGL-FGGPRASK-L-L-Q-I----P----ETRLFHHEYNSMVCTVEIVDDVRAAI 612 (643)
Q Consensus 571 -------------------------~~~-~g~~~~~~-~-~-p-v----~----~~~~~~eE~FgPvl~v~~~~~~deAi 612 (643)
+++ +|+.. .+ + + | | + +|++++||+||||++|++|+|+||||
T Consensus 335 ~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~-~g~~~~~Ptvl~~v~~~~~~~~i~~eEiFGPVl~v~~~~~~deAi 413 (501)
T 1uxt_A 335 DVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRR-LGPTYVQPTFVEAPADRVKDMVLYKREVFAPVALAVEVKDLDQAI 413 (501)
T ss_dssp SBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCB-CSSSCBCCEEEECCHHHHTTSHHHHSCCCSSEEEEEEESSHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcc-CCCceECCEEEeCCCCCCCcCHHHhCcccCceEEEEeeCCHHHHH
Confidence 222 34433 23 3 3 5 2 3 36899999999999999999999999
Q ss_pred HHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 613 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 613 ~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
+++|+++|||++||||+|.++++++++++++
T Consensus 414 ~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~ 444 (501)
T 1uxt_A 414 ELANGRPYGLDAAVFGRDVVKIRRAVRLLEV 444 (501)
T ss_dssp HHHHTSSEESEEEEECCCHHHHHHHHHHCCS
T ss_pred HHHhcCCCCcEEEEeCCCHHHHHHHHHhCCE
Confidence 9999999999999999999999999999875
No 34
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=100.00 E-value=7.4e-67 Score=575.26 Aligned_cols=351 Identities=15% Similarity=0.170 Sum_probs=301.7
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 31 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 102 (487)
T 2w8n_A 31 QDPASGAALGMVADCG------VREARAAVRAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPL-- 102 (487)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 3466788899988887 88999999999999999999999999999999999999999999999887765432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~A 424 (643)
.++. .++..+++.++++++..+. .|...+.. ..+...+++++|+|||++|+|| ||. +++++++||
T Consensus 103 --~ea~--------~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 170 (487)
T 2w8n_A 103 --KEAH--------GEILYSAFFLEWFSEEARRVYGDIIHTP--AKDRRALVLKQPIGVAAVITPWNFPSAMITRKVGAA 170 (487)
T ss_dssp --HHHH--------HHHHHHHHHHHHHHHHGGGCCCEEECCS--CTTCEEEEEEEECCEEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHHH--------HHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEEecceEEEEECCCcchHHHHHHHHHHH
Confidence 2221 2567777888877755433 34333211 1345678899999999999999 484 677999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeec---C-cchHhHhhhCCCCccEEEeecCHHHHHHHHH
Q 006484 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVT---S-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 499 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~---~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~ 499 (643)
|++||+||+|||+.||+|+.++++++.+ + ||+|++|+|+ | +.++++.|..||+||+|+||||+.+|+.|++
T Consensus 171 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~~~~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~ 246 (487)
T 2w8n_A 171 LAAGCTVVVKPAEDTPFSALALAELASQ----AGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLH 246 (487)
T ss_dssp HHHTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCCCHHHHHHHHHHHTTCTTEEEEEEEECHHHHHHHHH
T ss_pred HHcCCEEEEECCCcchHHHHHHHHHHHH----hCCCCCeEEEEecCCCCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999987 6 9999999999 6 4567777778999999999999999999988
Q ss_pred hc---CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHH-cC----
Q 006484 500 ST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQH-EG---- 570 (643)
Q Consensus 500 ~a---~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~-~~---- 570 (643)
.+ .||+++|||||||+||++|||+|+|++.+++++|.|+| +|+|++|+|||+++| |+|+++|++++++ +.
T Consensus 247 ~aa~~~~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~~G~p 325 (487)
T 2w8n_A 247 HAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIH-DAFVKAFAEAMKKNLRVGNG 325 (487)
T ss_dssp HHHTTTCEEEEEECEEEEEEECTTSCHHHHHHHHHHHHTCCCSCCCSEEEEEEEEHHHH-HHHHHHHHHHHHHHCCBSCT
T ss_pred HHhccCCcEEEecCCCCeEEECCCCCHHHHHHHHHHHHHhCCCCccccCCEEEEcccHH-HHHHHHHHHHHHhhcccCCc
Confidence 77 59999999999999999999999999999999999998 999999999999999 8999999999888 52
Q ss_pred ------------------------------CEE-ecCccc-cc--cc-c-C-----CCCccccccccCceEEEEEeCCHH
Q 006484 571 ------------------------------VGL-FGGPRA-SK--LL-Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 609 (643)
Q Consensus 571 ------------------------------~~~-~g~~~~-~~--~~-p-v-----~~~~~~~eE~FgPvl~v~~~~~~d 609 (643)
+++ +|+... .+ ++ | | ++|++++||+||||++|++|+|+|
T Consensus 326 ~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gg~~~~~g~~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~~ 405 (487)
T 2w8n_A 326 FEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEE 405 (487)
T ss_dssp TSTTCCBCCCSSHHHHHHHHHHHHHHHTTTCEEEECCSBCTTCTTCBCCEEEEEECGGGGTTCTTCCSSEEEEEEESCHH
T ss_pred ccccCcccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCCCceECCEEEecCCCcchhhhcccccceEEEEEeCCHH
Confidence 222 244332 23 34 5 3 358999999999999999999999
Q ss_pred HHHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 610 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 610 eAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
|||+++|+++|||++||||+|.+++++|++++++
T Consensus 406 eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~a 439 (487)
T 2w8n_A 406 EAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEV 439 (487)
T ss_dssp HHHHHHTCTTCCSEEEEECCCHHHHHHHHHHSCS
T ss_pred HHHHHHhCCCCCceEEEeCCCHHHHHHHHHhCCe
Confidence 9999999999999999999999999999999875
No 35
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=8.9e-67 Score=575.73 Aligned_cols=351 Identities=17% Similarity=0.175 Sum_probs=298.2
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 27 ~~P~t~~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 98 (485)
T 4dng_A 27 LNPYDQSVITTASLAT------GKQLEDAFDIAQKAQKEWAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTI-- 98 (485)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 3467788899988888 88999999999999999999999999999999999999999999998887765421
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeeEEEEeeeeeeEEEEcCC-Cc-hhHHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RP-DALVQIASLA 424 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P-~~~~~~~~~A 424 (643)
.++ ..++..+++.++++++..+.. +...+. ....+...+++++|+|||++|+|| +| .++++++++|
T Consensus 99 --~~a--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 167 (485)
T 4dng_A 99 --IKS--------TIELEQTIAILDEAMTYTGELGGVKEVP-SDIEGKTNKIYRLPLGVISSISPFNFPMNLSMRSIAPA 167 (485)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHGGGCSCEECCC-CSSTTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhCCeeccc-cCCCCceEEEEEecceEEEEECCCccHHHHHHHHHHHH
Confidence 222 236777888888887655443 332221 112456778899999999999999 48 4678999999
Q ss_pred HHhCCEEEEeCCcchHHHH-HHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhc
Q 006484 425 IRSGNGLLLKGGKEAMRSN-AILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 501 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~-~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a 501 (643)
|++||+||+|||+.||+++ .++++++.+ + +|+|++|+|++ +.++++.|..||+||+|+||||+.+|+.|++.+
T Consensus 168 LaaGN~VVlKps~~tp~~~~~~l~~~l~~----aGlP~gvv~vv~g~~~~~~~~L~~~p~v~~v~fTGS~~~g~~i~~~a 243 (485)
T 4dng_A 168 IALGNSVVHKPDIQTAISGGTIIAKAFEH----AGLPAGVLNVMLTDVKEIGDGMLTNPIPRLISFTGSTAVGRHIGEIA 243 (485)
T ss_dssp HHTTCEEEEECCGGGHHHHTHHHHHHHHH----TTCCTTSEEECCCCHHHHTTHHHHCSSCSEEEEEECHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCcChHHHHHHHHHHHHH----hCcCCCeEEEEeCCChhHHHHHHhCCCCCEEEEECCcHHHHHHHHHH
Confidence 9999999999999999999 999999987 7 99999999995 455777777899999999999999999999877
Q ss_pred ---CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcCC------
Q 006484 502 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 571 (643)
Q Consensus 502 ---~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~~------ 571 (643)
.||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 244 a~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~~~~~ 322 (485)
T 4dng_A 244 GRAFKRMALELGGNNPFAVLSDADVDRAVDAAIFGKFIHQGQICMIINRIIVHQDVY-DEFVEKFTARVKQLPYGDQTDP 322 (485)
T ss_dssp HHHTCEEEEEECCCEEEEECTTSCHHHHHHHHHHHHTTCC----CCEEEEEEEHHHH-HHHHHHHHHHHHHCCBSCTTST
T ss_pred hhhccchhhhcCCCCceEEcCCCCHHHHHHHHHHHHHhcCCCccccCCEEEEeHHHH-HHHHHHHHHHHHhccCCCCCcC
Confidence 49999999999999999999999999999999999998 999999999999999 8999999999887532
Q ss_pred ----------------------------EE-ecCcccccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHHHH
Q 006484 572 ----------------------------GL-FGGPRASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 614 (643)
Q Consensus 572 ----------------------------~~-~g~~~~~~~-~-p-v-----~~~~~~~eE~FgPvl~v~~~~~~deAi~~ 614 (643)
++ +|+.. .++ + | | ++|++++||+||||++|++|+|+||||++
T Consensus 323 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~-~g~~~~Ptvl~~v~~~~~i~~eE~FGPvl~v~~~~~~~eAi~~ 401 (485)
T 4dng_A 323 KTVVGPLINERQIEKALEIIEQAKTDGIELAVEGKR-VGNVLTPYVFVGADNNSKIAQTELFAPIATIIKAGSDQEAIDM 401 (485)
T ss_dssp TCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCE-ETTEECCEEEESCCTTSHHHHCCCCSSEEEEEEESSHHHHHHH
T ss_pred CCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCC-CCcEECCEEEecCCCCChhhcCccccceEEEEEeCCHHHHHHH
Confidence 11 23322 222 2 5 2 35889999999999999999999999999
Q ss_pred HHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 615 IHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 615 aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
+|+++|||++||||+|.+++++|++++++
T Consensus 402 an~~~~gL~a~v~t~d~~~a~~~~~~l~~ 430 (485)
T 4dng_A 402 ANDTEYGLSSAVFTSDLEKGEKFALQIDS 430 (485)
T ss_dssp HHCSSCCSEEEEECSCHHHHHHHHTTSCS
T ss_pred HhCCCCCceEEEECCCHHHHHHHHHhcCc
Confidence 99999999999999999999999999875
No 36
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=100.00 E-value=2.8e-67 Score=577.68 Aligned_cols=349 Identities=16% Similarity=0.116 Sum_probs=290.7
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|+++|+++++.|+++..
T Consensus 11 ~nP~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 82 (474)
T 4h7n_A 11 RNPRTGKFDYVIIPPP------PRLLAQQCNRARRAQSRWQELGVEGRITTLQQWKQAILSRREQLTEALVNDTGRLS-- 82 (474)
T ss_dssp ECTTTCSEEEEECCCC------HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHSCSH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH--
Confidence 3467888899988887 89999999999999999999999999999999999999999999999887765421
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~A 424 (643)
.+ ..+++.++..+++++..... .+.... ....++...+..++|+|||++|+|| ||. +++++++||
T Consensus 83 ---~~--------~~ev~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~~~~~A 150 (474)
T 4h7n_A 83 ---IT--------VLEIDSFLASIDRWCGLAPELLQTSAK-NTSIPFIALQQSLVPYPLVGVISPWNFPLTLSMIDTIPA 150 (474)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHHHHHHCCEEE-ECSSTTEEEEEEEEECSEEEEEECSSSHHHHHHTTHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHhhhhhccccccc-CCCCCCccceEEEEeccEEEEECCCCcHHHHHhcccCcc
Confidence 11 12455666666665543221 111111 1112345566789999999999999 585 667999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecCcchHhHhhhCCCCccEEEeecCHHHHHHHHHhc--
Q 006484 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a-- 501 (643)
|++||+||+||||.||+++..+++++.+ + +|+|++|+|+++.+.+..|..| +|+|+||||+.+||.|++.+
T Consensus 151 LaaGN~VVlKps~~tp~~~~~l~~~~~~----ag~p~gv~~~v~g~~~~~~~l~~~--v~~v~FTGS~~~G~~i~~~aa~ 224 (474)
T 4h7n_A 151 LLAGCAVVVKPSEIAPRFVAPLLMALNT----VPELRDVLIFVEGGGETGANLINY--VDFVCFTGSVATGREVAETAAR 224 (474)
T ss_dssp HHHTCEEEEEECTTSCTTHHHHHHHHTT----CTTTTTTEEECCCCHHHHHHHHTT--CSEEEEESCHHHHHHHHHHHHH
T ss_pred hhcCCceeecccccCchHHHHHHhhhhh----hcccccceeeccccchhhhhhhhc--cceEEeccccchhhhhhhhhhc
Confidence 9999999999999999999999998876 6 9999999999655566666655 99999999999999998877
Q ss_pred -CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcCC--------
Q 006484 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV-------- 571 (643)
Q Consensus 502 -~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~~-------- 571 (643)
.||+++|||||||+||++|||++.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 225 ~~~~v~lElGGk~p~iV~~dAdl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~g~p~~~~~ 303 (474)
T 4h7n_A 225 RFIPAYLELGGKDPAIVLESANLELATSAILWGAVVNTGQSCLSIERIYVAESKF-EEFYHQLIAKAHRLQLAYPLVEDG 303 (474)
T ss_dssp HTCCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGH-HHHHHHHHHHHHHCCBCCSSGGGC
T ss_pred ccccccccCCCcCccccCchhhHHHHHHHHHhhhccCCCCceeecccccchHHHH-HHHHHHHHHHhhccccCCCccccc
Confidence 49999999999999999999999999999999999998 999999999999999 8999999998887532
Q ss_pred --------------------------EE-ecCccc---ccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHHH
Q 006484 572 --------------------------GL-FGGPRA---SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 613 (643)
Q Consensus 572 --------------------------~~-~g~~~~---~~~-~-p-v-----~~~~~~~eE~FgPvl~v~~~~~~deAi~ 613 (643)
.+ .|+... .++ + | | ++|++++||+||||++|++|+|+||||+
T Consensus 304 ~~gpli~~~~~~~v~~~i~~a~~~ga~v~~Gg~~~~~~~g~~~~Ptv~~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 383 (474)
T 4h7n_A 304 AIGPIIAEKQAGIINDHILDAVEKGAVIHCGGKVEELGGGWWCRPTVMTNVNHSMKVMTEETFGPIMPVMPFPDVEEAVY 383 (474)
T ss_dssp SBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCEEETTEEECCCEEEESCCTTSGGGTSCCCSSEEEEEEESSHHHHHH
T ss_pred ccCccccHHHHHHHHHHHHHHHhhCceeccCCcccccCCCcccCceeEEeeccccccccccccCcEEEEEEECCHHHHHH
Confidence 11 232211 122 2 5 2 4689999999999999999999999999
Q ss_pred HHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 614 HIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 614 ~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
++|+++|||++||||+|.++++++++++++
T Consensus 384 ~aN~~~~GL~a~v~t~d~~~a~~~a~~l~a 413 (474)
T 4h7n_A 384 LANDTIYGLSAAVFAGSEDEALKVARQLNA 413 (474)
T ss_dssp HHHCSSCCSEEEEECSSHHHHHHHHTTSCC
T ss_pred HHHcCCCCCeEEEEeCCHHHHHHHHHhCCe
Confidence 999999999999999999999999999875
No 37
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=100.00 E-value=2e-66 Score=573.65 Aligned_cols=351 Identities=17% Similarity=0.211 Sum_probs=301.1
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|++++..|++++.
T Consensus 27 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~-- 98 (490)
T 2ve5_A 27 INPANGEVLAKVQRAS------REDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPL-- 98 (490)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 3467788899988888 88999999999999999999999999999999999999999999999887765432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~A 424 (643)
.++. ..++..+++.++++++..+.. +...+. ..+...+++++|+|||++|+|| +|. +.+++++||
T Consensus 99 --~ea~-------~~ev~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~pwN~P~~~~~~~~~~A 166 (490)
T 2ve5_A 99 --AETR-------SVDIVTGADVLEYYAGLVPAIEGEQIPL---RETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPA 166 (490)
T ss_dssp --HHHT-------TTHHHHHHHHHHHHHHHGGGCCEEEEEE---ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHHh-------HHHHHHHHHHHHHHHHHHHHhcCccccC---CCCceeeEeeccccEEEEECCCcchHHHHHHHHHHH
Confidence 1211 125677777788776544322 333221 2456678899999999999999 585 567999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhc-
Q 006484 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a- 501 (643)
|++||+||+|||+.||+|+.++++++.+ + ||+|++|+|++ +.++++.|..||+||+|+||||+.+||.|++.+
T Consensus 167 LaaGN~vVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~~L~~~p~vd~v~fTGS~~~g~~i~~~a~ 242 (490)
T 2ve5_A 167 LAAGNAMIFKPSEVTPLTALKLAEIYTE----AGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASAS 242 (490)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCcchHHHHHHHHHHHH----hCcCcCeEEEEeCCChHHHHHHHhCCCcCEEEEeCCcHHHHHHHHhch
Confidence 9999999999999999999999999987 6 99999999996 667788888899999999999999999998877
Q ss_pred ---CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC-------
Q 006484 502 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 570 (643)
Q Consensus 502 ---~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~------- 570 (643)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 243 a~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~d~ 321 (490)
T 2ve5_A 243 SSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQ-ARFEAKVLERVQRIRLGDPQDE 321 (490)
T ss_dssp HHHCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred hccccceEEEcCCCceeEECCCCCHHHHHHHHHHHHHhcCCCCccCCCeEEEcHHHH-HHHHHHHHHHHHhccCCCCCCC
Confidence 49999999999999999999999999999999999998 999999999999999 899999999988652
Q ss_pred ---------------------------CEE-ecCcc------ccccc--c-C-----CCCccccccccCceEEEEEeCCH
Q 006484 571 ---------------------------VGL-FGGPR------ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 608 (643)
Q Consensus 571 ---------------------------~~~-~g~~~------~~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~ 608 (643)
+++ +|+.. ..++| | | ++|++++||+||||++|++|+|+
T Consensus 322 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPvl~v~~~~~~ 401 (490)
T 2ve5_A 322 NTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDE 401 (490)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCTTTGGGTTCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESCH
T ss_pred CCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccCCCCceEccEEEecCCCCCccccceeeCCeEEEEEeCCH
Confidence 122 34432 12333 5 2 46899999999999999999999
Q ss_pred HHHHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 609 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 609 deAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
||||+++|+++|||++||||+|.+++++|++++++
T Consensus 402 deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~a 436 (490)
T 2ve5_A 402 DEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEA 436 (490)
T ss_dssp HHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCC
T ss_pred HHHHHHHhCCCCCceEEEEcCCHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999875
No 38
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=100.00 E-value=2.2e-66 Score=570.75 Aligned_cols=350 Identities=17% Similarity=0.186 Sum_probs=300.8
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 23 ~~P~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 94 (475)
T 1euh_A 23 YEPASGAELGSVPAMS------TEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGY-- 94 (475)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 4467888899988887 88999999999999999999999999999999999999999999999988775432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCC----eeE-EEEeeeeeeEEEEcCC-Cch-hHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADG----LIL-EKTSCPLGVLLIVFES-RPD-ALVQ 419 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~----~~~-~~~~~PlGvv~~I~p~-~P~-~~~~ 419 (643)
.++ ..++..+++.++++++..+. .+...+.. . .+ ... +++++|+|||++|+|| ||. +.++
T Consensus 95 --~ea--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~ 162 (475)
T 1euh_A 95 --KSA--------VSEVVRTAEIINYAAEEGLRMEGEVLEGG-S-FEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGS 162 (475)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHHTTCCEEEEEGG-G-TCGGGTTEEEEEEEEECSEEEEECCTTSTTHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCCcccCC-C-CCccccceeeEEEEeccceEEEECCCCchHHHHHH
Confidence 222 24677788888887765443 34432211 1 23 355 7899999999999998 484 6679
Q ss_pred HHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHH
Q 006484 420 IASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQI 497 (643)
Q Consensus 420 ~~~~AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i 497 (643)
+++|||++||+||+|||+.||+|+.++++++.+ + ||+|++|+|++ +.++++.|..||+||+|+||||+.+|+.|
T Consensus 163 ~~~~ALaaGN~vVlKps~~tp~t~~~l~~ll~~----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i 238 (475)
T 1euh_A 163 KIAPALIAGNVIAFKPPTQGSISGLLLAEAFAE----AGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERI 238 (475)
T ss_dssp HHHHHHHTTCEEEEECCSTTHHHHHHHHHHHHH----HTCCTTTEEECCCCHHHHHHHHHHCTTCCEEEEESCHHHHHHH
T ss_pred HHHHHHHcCCEEEEeCCCcChHHHHHHHHHHHH----hCCCcCeEEEEeCCcHHHHHHHHhCCCcCEEEEECchHHHHHH
Confidence 999999999999999999999999999999987 6 99999999996 45577777789999999999999999999
Q ss_pred HHhc-CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC-----
Q 006484 498 KEST-KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG----- 570 (643)
Q Consensus 498 ~~~a-~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~----- 570 (643)
++.+ .||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 239 ~~~aa~~~v~lElGGk~p~iV~~dADl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~g~p~ 317 (475)
T 1euh_A 239 GKMAGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVA-DELVEKIREKVLALTIGNPE 317 (475)
T ss_dssp HHHTTTSCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCSSSEEEEEEEHHHH-HHHHHHHHHHHHTSCBSCGG
T ss_pred HHhcCCCcEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhhcCCCcCCCCcEEEEehhHH-HHHHHHHHHHHHhccCCCcc
Confidence 9988 59999999999999999999999999999999999998 999999999999999 899999999987653
Q ss_pred ----------------------------CEEe-cCcccccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHHH
Q 006484 571 ----------------------------VGLF-GGPRASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 613 (643)
Q Consensus 571 ----------------------------~~~~-g~~~~~~~-~-p-v-----~~~~~~~eE~FgPvl~v~~~~~~deAi~ 613 (643)
+++. |+.. .++ + | | ++|++++||+||||++|++|+|+||||+
T Consensus 318 ~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~-~g~~~~Ptvl~~v~~~~~~~~eE~FGPvl~v~~~~~~~eai~ 396 (475)
T 1euh_A 318 DDADITPLIDTKSADYVEGLINDANDKGATALTEIKR-EGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIE 396 (475)
T ss_dssp GTCSBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCCE-ETTEECCEEEESCCTTSGGGTSCCCSSEEEEEEESCHHHHHH
T ss_pred ccCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcc-CCceeCCEEEeCCCCcCHHHcCccccceEEEEecCCHHHHHH
Confidence 2222 3322 233 3 5 2 3578999999999999999999999999
Q ss_pred HHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 614 HIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 614 ~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
++|+++|||++||||+|.++++++++++++
T Consensus 397 ~an~~~~gL~a~v~t~d~~~~~~~~~~l~~ 426 (475)
T 1euh_A 397 ISNKSEYGLQASIFTNDFPRAFGIAEQLEV 426 (475)
T ss_dssp HHHHSSEESEEEEECSCHHHHHHHHHHSCS
T ss_pred HHhCCCCCeeEEEEeCCHHHHHHHHHhCCE
Confidence 999999999999999999999999999875
No 39
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Probab=100.00 E-value=2.1e-66 Score=574.51 Aligned_cols=350 Identities=15% Similarity=0.157 Sum_probs=300.4
Q ss_pred HHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Q 006484 269 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAG 348 (643)
Q Consensus 269 ~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~g 348 (643)
+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 34 ~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~--- 104 (508)
T 3r64_A 34 NPYDDSVIAESKQAS------IADVDAAYEAAKKAQAEWAATPAAERSAIIYRAAELLEEHREEIVEWLIKESGSTR--- 104 (508)
T ss_dssp CTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCCH---
T ss_pred CCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCH---
Confidence 356788899988887 88999999999999999999999999999999999999999999998877654321
Q ss_pred hhhHHHHHhhcChhHHHHHHHHHHHHhcccccccccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHHHH
Q 006484 349 YAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIR 426 (643)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~Ala 426 (643)
.++ ..++..+++.++++++..+......+.. ...+...+++++|+|||++|+|| +|. +.++++++||+
T Consensus 105 -~~a--------~~Ev~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALa 174 (508)
T 3r64_A 105 -SKA--------NLEITLAGNITKESASFPGRVHGRISPS-NTPGKENRVYRVAKGVVGVISPWNFPLNLSIRSVAPALA 174 (508)
T ss_dssp -HHH--------HHHHHHHHHHHHHHTTSTTTCCEEEECC-SSTTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHHHH
T ss_pred -HHH--------HHHHHHHHHHHHHHHHHhhhhcCccccc-CCCCceeEEEEecceEEEEECCCcchHHHHHHHHHHHHh
Confidence 222 2368888899999887665432233211 12356778899999999999998 484 67799999999
Q ss_pred hCCEEEEeCCcchHHHH-HHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhc--
Q 006484 427 SGNGLLLKGGKEAMRSN-AILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (643)
Q Consensus 427 aGN~vi~Kps~~tp~t~-~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a-- 501 (643)
+||+||+|||+.||+|+ .++++++.+ + ||+|++|+|++ +.++++.|..||+||+|+||||+.+||.|++.+
T Consensus 175 aGN~VVlKps~~tp~t~~~~l~~ll~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~fTGS~~~g~~i~~~aa~ 250 (508)
T 3r64_A 175 VGNAVVIKPASDTPVTGGVIPARIFEE----AGVPAGVISTVAGAGSEIGDHFVTHAVPKLISFTGSTPVGRRVGELAIN 250 (508)
T ss_dssp TTCEEEEECCTTCHHHHTHHHHHHHHT----TTCCTTTEEECCCCTTTTHHHHHHCSSCSEEEEESCHHHHHHHHHHHHS
T ss_pred cCCEEEEECCCCChHHHHHHHHHHHHH----hCcCcCeEEEEeCCCHHHHHHHhhCCCccEEEEECCHHHHHHHHHHhhc
Confidence 99999999999999999 999999887 7 99999999995 456676677799999999999999999998865
Q ss_pred ---CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcCC------
Q 006484 502 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 571 (643)
Q Consensus 502 ---~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~~------ 571 (643)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 251 ~~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~ 329 (508)
T 3r64_A 251 GGPMKTVALELGGNAPFVVLADADIDAAAQAAAVGAFLHQGQICMSINRVIVDAAVH-DEFLEKFVEAVKNIPTGDPSAE 329 (508)
T ss_dssp SSSCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTSTTCTTTCCSEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTSS
T ss_pred ccCCCceEeecCCcCceEECCCCCHHHHHHHHHHHHHhcCCCCcccCcEEEEehhHH-HHHHHHHHHHHHhccCCCCccC
Confidence 48999999999999999999999999999999999998 999999999999999 8999999999887521
Q ss_pred ----------------------------EE-ecCcccccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHHHH
Q 006484 572 ----------------------------GL-FGGPRASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 614 (643)
Q Consensus 572 ----------------------------~~-~g~~~~~~~-~-p-v-----~~~~~~~eE~FgPvl~v~~~~~~deAi~~ 614 (643)
++ +|+.. .++ + | | ++|++++||+||||++|++|+|+||||++
T Consensus 330 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~-~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 408 (508)
T 3r64_A 330 GTLVGPVINDSQLSGLKEKIELAKKEGATVQVEGPI-EGRLVHPHVFSDVTSDMEIAREEIFGPLISVLKADDEAHAAEL 408 (508)
T ss_dssp SCCBCCCSCHHHHHHHHHHHHHHHTTTCEEEECCCE-ETTEECCEEEEEECTTSGGGTSCCCSSEEEEEEESSHHHHHHH
T ss_pred CCcccCCCCHHHHHHHHHHHHHHHHcCCEEEecCCC-CCcEEecEEEecCCCCChhhcccccCceEEEEEeCCHHHHHHH
Confidence 22 23322 222 2 5 2 36899999999999999999999999999
Q ss_pred HHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 615 IHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 615 aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
+|+++|||++||||+|.+++++|++++++
T Consensus 409 aN~~~~gL~a~v~t~d~~~a~~~~~~l~a 437 (508)
T 3r64_A 409 ANASDFGLSAAVWSKDIDRAAQFALQIDS 437 (508)
T ss_dssp HTSSSCCSCEEEECSCHHHHHHHHTTSCS
T ss_pred HhCCCCCcEEEEEcCCHHHHHHHHHhCCc
Confidence 99999999999999999999999999875
No 40
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=100.00 E-value=2.5e-66 Score=567.89 Aligned_cols=338 Identities=21% Similarity=0.257 Sum_probs=282.7
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhchhhHHHHHhhcChhHHHHHHH
Q 006484 290 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 369 (643)
Q Consensus 290 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 369 (643)
.+++++++++|++||+.|+.+|.++|.++|++++++|++|.++|+++++.|++++. .++...++.....+++++++
T Consensus 17 ~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~----~ea~~~ev~~~~~~~~~~~~ 92 (469)
T 3sza_A 17 MSKISEAVKRARAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNE----WNAYYEEVVYVLEEIEYMIQ 92 (469)
T ss_dssp -CHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH----HHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999988876542 23322233334456777777
Q ss_pred HHHHHhcccccccccccccccCCCeeEEEEeeeeeeEEEEcCC-Cc-hhHHHHHHHHHHhCCEEEEeCCcchHHHHHHHH
Q 006484 370 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RP-DALVQIASLAIRSGNGLLLKGGKEAMRSNAILH 447 (643)
Q Consensus 370 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P-~~~~~~~~~AlaaGN~vi~Kps~~tp~t~~~~~ 447 (643)
.++.|+.. .+.+.... ..+...+++|+|+|||++|+|| || .+.+++++|||++||+||+||||.||.|+.+++
T Consensus 93 ~~~~~~~~-~~~~~~~~----~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~ 167 (469)
T 3sza_A 93 KLPEWAAD-EPVEKTPQ----TQQDELYIHSEPLGVVLVIGTWNYPFNLTIQPMVGAIAAGNAVVLKPSELSENMASLLA 167 (469)
T ss_dssp HHHHHHSC-EECCCCGG----GTTSEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHH
T ss_pred HHHhhhcc-cccCcccc----CCCccceeeccCCCEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHH
Confidence 77666531 11111111 1233567899999999999998 58 467899999999999999999999999999999
Q ss_pred HHHHHhcccccCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhc---CCCEEEecCccceEEEcCCCCH
Q 006484 448 KVITSAIPDTVGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST---KIPVLGHADGICHVYVDKSANL 523 (643)
Q Consensus 448 ~l~~~a~~~alP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a---~~p~~lelGG~~p~iV~~dAdl 523 (643)
+++.+ +||+|++|+|+| ++.+++++. | +||+|+||||+.+||.|++.+ .||+++|||||||+||++|||+
T Consensus 168 ~l~~~----alP~gvv~vv~g~~~~~~~ll~-~-~vd~I~FTGS~~vG~~i~~~aa~~lkpv~lELGGk~p~iV~~dADl 241 (469)
T 3sza_A 168 TIIPQ----YLDKDLYPVINGGVPETTELLK-E-RFDHILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDL 241 (469)
T ss_dssp HHHHH----HSCTTTSCBCCCSHHHHHHHTT-S-CCSEEEEESCHHHHHHHHHHHHTTTCCEEEECCCCCEEEECTTSCH
T ss_pred HHHHH----hCCcceEEEEECCHHHHHHHHh-c-CCCEEEEECCHHHHHHHHHHHhhccCceEEecCCCCceEECCCCCH
Confidence 99987 499999999995 455667664 5 799999999999999999877 3999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHc----------------------------CCEE-
Q 006484 524 DVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE----------------------------GVGL- 573 (643)
Q Consensus 524 ~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~----------------------------~~~~- 573 (643)
|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++ |.++
T Consensus 242 ~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~i~ga~v~ 320 (469)
T 3sza_A 242 DVACRRIAWGKFMNSGQTCVAPDYILCDPSIQ-NQIVEKLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIEGQKVA 320 (469)
T ss_dssp HHHHHHHHHHHHGGGGCCTTSCCEEEECGGGH-HHHHHHHHHHHHHHHCSCGGGCTTCCCCSCHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEehhHH-HHHHHHHHHHHHHhcCCCCcccCcccccCCHHHHHHHHHHHcCCEEE
Confidence 9999999999999998 999999999999999 89999999988763 1222
Q ss_pred ecCccc-cccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 574 FGGPRA-SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 574 ~g~~~~-~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~deAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
+|+... .++| | | ++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.++++++++++++
T Consensus 321 ~GG~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~~ 399 (469)
T 3sza_A 321 YGGTGDAATRYIAPTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETSS 399 (469)
T ss_dssp ECCCEETTTTEECCEEEESCCTTSGGGTSCCCSSEEEEEECSSHHHHHHHHHHSCCCSEEEEECSCHHHHHHHHHHCCC
T ss_pred eCCccCCCCceeCCeeecCCCCcchhhhccccCCeEEEEecCCHHHHHHHHHcCCCCceEEEECCCHHHHHHHHHhCCc
Confidence 244321 2333 5 2 4689999999999999999999999999999999999999999999999999999875
No 41
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=100.00 E-value=3.7e-66 Score=567.83 Aligned_cols=349 Identities=15% Similarity=0.209 Sum_probs=294.2
Q ss_pred HHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Q 006484 269 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAG 348 (643)
Q Consensus 269 ~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~g 348 (643)
+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 13 ~P~t~~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~--- 83 (462)
T 3etf_A 13 NPATGQTLAAMPWAN------AQEIEHALSLAASGFKKWKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPI--- 83 (462)
T ss_dssp CTTTCCEEEECCCCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH---
T ss_pred CCCCCCEEEEecCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---
Confidence 356788889887777 88999999999999999999999999999999999999999999999887765432
Q ss_pred hhhHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHHH
Q 006484 349 YAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAI 425 (643)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~Al 425 (643)
.++ ..++..+++.++++++..+. .+.. +. ...+...+++++|+|||++|+|| ||. +.++++++||
T Consensus 84 -~~a--------~~ev~~~~~~~~~~a~~~~~~~~~~-~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~AL 151 (462)
T 3etf_A 84 -KQA--------RAEVTKSAALCDWYAEHGPAMLNPE-PT--LVENQQAVIEYRPLGVILAIMPWNFPLWQVLRGAVPIL 151 (462)
T ss_dssp -HHH--------HHHHHHHHHHHHHHHHHHHHHTSCE-EC--SSGGGCEEEEEEECSEEEEECCSSSTTHHHHHHHHHHH
T ss_pred -HHH--------HHHHHHHHHHHHHHHHhHHHhcCCc-cc--CCCCceeEEEeecCcEEEEECCCchHHHHHHHHHHHHH
Confidence 122 12556666666666543321 1222 11 11244577899999999999998 484 6789999999
Q ss_pred HhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecCcchHhHhhhCCCCccEEEeecCHHHHHHHHHhc---
Q 006484 426 RSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST--- 501 (643)
Q Consensus 426 aaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a--- 501 (643)
++||+||+||||.||.|+.++++++.+ + ||+|++|+|+++.+.++.|..||+||+|+||||+.+|+.|++.+
T Consensus 152 aaGN~VvlKps~~tp~~~~~l~~~l~~----aglP~gv~~vv~g~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~aa~~ 227 (462)
T 3etf_A 152 LAGNSYLLKHAPNVTGCAQMIARILAE----AGTPAGVYGWVNANNEGVSQMINDPRIAAVTVTGSVRAGAAIGAQAGAA 227 (462)
T ss_dssp HTTCEEEEECCTTCHHHHHHHHHHHHH----TTCCBTTEEECCCCHHHHHHHHTSTTEEEEEEESCHHHHHHHHHHHHHT
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHHHH----hCCCcCeEEEEECCHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHhcc
Confidence 999999999999999999999999987 6 99999999996545556666789999999999999999998877
Q ss_pred CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC----------
Q 006484 502 KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG---------- 570 (643)
Q Consensus 502 ~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~---------- 570 (643)
.+|+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 228 ~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~~~ 306 (462)
T 3etf_A 228 LKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIVEEGIA-QAFTDRFVAAAAALKMGDPLVEEND 306 (462)
T ss_dssp TCCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHH-HHHHHHHHHHHHHCCBSCTTSTTCS
T ss_pred CCceEEEcCCCCccEECCCCCHHHHHHHHHHHHHhcCCCcccCCcEEEEehhHH-HHHHHHHHHHHHhhcCCCCccccCc
Confidence 49999999999999999999999999999999999998 999999999999999 899999999988752
Q ss_pred ------------------------CEE-ecCcc--cccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHHHHH
Q 006484 571 ------------------------VGL-FGGPR--ASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHI 615 (643)
Q Consensus 571 ------------------------~~~-~g~~~--~~~~-~-p-v-----~~~~~~~eE~FgPvl~v~~~~~~deAi~~a 615 (643)
+++ +|+.. ..++ + | | ++|++++||+||||++|++|+|+||||+++
T Consensus 307 ~gpli~~~~~~~v~~~i~~a~~~ga~~~~gg~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPVl~v~~~~~~deAi~~a 386 (462)
T 3etf_A 307 LGPMARFDLRDELHQQVQASVAEGARLLLGGEKIAGEGNYYAATVLADVTPDMTAFRQELFGPVAAITVAKDAAHALALA 386 (462)
T ss_dssp BCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcccCCCCcEEeeEEEECCCCCChhhcCceeCcEEEEEEcCCHHHHHHHH
Confidence 122 24332 1222 3 5 2 358899999999999999999999999999
Q ss_pred HccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 616 HQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 616 N~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
|+++|||++||||+|.+++++|++++++
T Consensus 387 n~~~~gL~a~v~t~d~~~a~~~~~~l~a 414 (462)
T 3etf_A 387 NDSEFGLSATIFTADDTLAAEMAARLEC 414 (462)
T ss_dssp HCSSCCSCEEEECSCHHHHHHHHHHCCS
T ss_pred hCCCCCceEEEECCCHHHHHHHHHhCCc
Confidence 9999999999999999999999999875
No 42
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.3e-65 Score=564.29 Aligned_cols=349 Identities=16% Similarity=0.122 Sum_probs=293.1
Q ss_pred HHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Q 006484 269 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAG 348 (643)
Q Consensus 269 ~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~g 348 (643)
+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 26 ~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~--- 96 (490)
T 3ju8_A 26 DPVGQGVVWSGRGAD------ATQVDAAVCAAREAFPAWARRPLEQRIELLERFAATLKSRADELARVIGEETGKPL--- 96 (490)
T ss_dssp CTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH---
T ss_pred CCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---
Confidence 467888899988887 88999999999999999999999999999999999999999999999888775432
Q ss_pred hhhHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHHH
Q 006484 349 YAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAI 425 (643)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~Al 425 (643)
.++. .++..+++.++++++..+. .+...+. ..+...+++++|+|||++|+|| ||. +.+++++|||
T Consensus 97 -~ea~--------~ev~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~AL 164 (490)
T 3ju8_A 97 -WESA--------TEVTSMVNKVAISVQAFRERTGEKSGP---LADATAVLRHKPHGVVAVFGPYNFPGHLPNGHIVPAL 164 (490)
T ss_dssp -HHHH--------HHHHHHHHHHHHHHHHHHHHSCCEEEE---ETTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHH
T ss_pred -HHHH--------HHHHHHHHHHHHHHHHHHHhcCCcccc---CCCCeeeEEECCCCEEEEECCCcchHHHHHHHHHHHH
Confidence 2221 2455555666655433221 1222211 1123445679999999999998 584 6789999999
Q ss_pred HhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecCcchHhHhhhCCCCccEEEeecCHHHHHHHHHhcC--
Q 006484 426 RSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK-- 502 (643)
Q Consensus 426 aaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a~-- 502 (643)
++||+||+|||+.||+|+.++++++.+ + ||+|++|+|+++.+.++.|..||+||+|+||||+.+|+.|++.+.
T Consensus 165 aaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~~aa~~ 240 (490)
T 3ju8_A 165 LAGNCVVFKPSELTPKVAELTLKAWIQ----AGLPAGVLNLVQGGRETGVALAAHRGLDGLFFTGSSRTGNLLHSQFGGQ 240 (490)
T ss_dssp HHTCEEEEECCTTCHHHHHHHHHHHHH----TTCCTTTEEECCCSHHHHHHHHTCTTCSEEEEESCHHHHHHHHHHTTTC
T ss_pred HcCCeEEEECCCCCcHHHHHHHHHHHH----hCcCcCeEEEEeCCHHHHHHHHhCCCcCEEEEECcHHHHHHHHHHhhcc
Confidence 999999999999999999999999987 6 999999999976567777778999999999999999999998774
Q ss_pred -CCE-EEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCcc-CCchhHHHHHHHHHHcCC-------
Q 006484 503 -IPV-LGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDL-ACNGALNELVVELQHEGV------- 571 (643)
Q Consensus 503 -~p~-~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i-~~~~f~~~l~~~~~~~~~------- 571 (643)
+|+ ++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++ | |+|+++|+++++++.+
T Consensus 241 ~~~v~~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l~~~~~~~~~G~~~~~~ 319 (490)
T 3ju8_A 241 PQKILALEMGGNNPLVVEEVADLDAAVYTIIQSAFISAGQRCTCARRLLVPQGAWG-DALLARLVAVSATLRVGRFDEQP 319 (490)
T ss_dssp TTSEEEEECCCCEEEEECCCSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEESSHHH-HHHHHHHHHHHHHCCBCCTTCSS
T ss_pred CCCcEEeecCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCCEEEEECCccH-HHHHHHHHHHHHhccCCCCCCCC
Confidence 888 7999999999999999999999999999999998 99999999999996 9 7999999999887632
Q ss_pred ----------------------------EE-ecCccc--ccc-c-c-C----CCCccccccccCceEEEEEeCCHHHHHH
Q 006484 572 ----------------------------GL-FGGPRA--SKL-L-Q-I----PETRLFHHEYNSMVCTVEIVDDVRAAID 613 (643)
Q Consensus 572 ----------------------------~~-~g~~~~--~~~-~-p-v----~~~~~~~eE~FgPvl~v~~~~~~deAi~ 613 (643)
++ +|+... .++ + | | ++|++++||+||||++|++|+|+||||+
T Consensus 320 ~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~PTvl~v~~~~~i~~eEiFGPVl~v~~~~~~~eAi~ 399 (490)
T 3ju8_A 320 APFMGAVISLSAAEHLLKAQEHLIGKGAQPLLAMTQPIDGAALLTPGILDVSAVAERPDEEFFGPLLQVIRYSDFAAAIR 399 (490)
T ss_dssp CCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCCCSTTSCCCCCEEEECTTCSSCCCCCCCSSEEEEEEESSHHHHHH
T ss_pred cCccccccCHHHHHHHHHHHHHHHHCCCEEEECCCccCCCCCEEccEEEEeCCCCccccccccccEEEEEEeCCHHHHHH
Confidence 11 222211 122 2 4 2 4589999999999999999999999999
Q ss_pred HHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 614 HIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 614 ~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
++|+++|||++||||+|.++++++++++++
T Consensus 400 ~aN~~~~gL~a~v~t~d~~~a~~~~~~l~a 429 (490)
T 3ju8_A 400 EANATQYGLAAGLLSDSRERFEQFLVESRA 429 (490)
T ss_dssp HHHCSSCCSEEEEECSCHHHHHHHHHHCCS
T ss_pred HHhcCCCCceEEEEcCCHHHHHHHHHhcCc
Confidence 999999999999999999999999999875
No 43
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=6.5e-66 Score=568.08 Aligned_cols=350 Identities=15% Similarity=0.169 Sum_probs=298.2
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 26 ~~P~t~~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 97 (486)
T 1t90_A 26 VNPATKEVLCQVPIST------KEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNT-- 97 (486)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 3467788889988887 88999999999999999999999999999999999999999999999887765432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEEeeeeeeEEEEcCCC-ch-hHHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFESR-PD-ALVQIASLA 424 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~~-P~-~~~~~~~~A 424 (643)
.++ ..++..+++.+++++.+.+. .|+..+.. ..+...+++|+|+|||++|+||| |. +.+++++||
T Consensus 98 --~~a--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~A 165 (486)
T 1t90_A 98 --KEA--------LGEVGRGIENVEFAAGAPSLMMGDSLASI--ATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPMA 165 (486)
T ss_dssp --HHH--------HHHHHHHHHHHHHHTTHHHHHCEEEEEEE--ETTEEEEEEEEECSEEEEECCSSCTTHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEecccCEEEEECCCchhHHHHHHHHHHH
Confidence 122 23677777888877654332 23322211 23456678999999999999995 84 677999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecCcchHhHhhhCCCCccEEEeecCHHHHHHHHHhc--
Q 006484 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 501 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a-- 501 (643)
|++||+||+||||.||+|+.++++++++ + ||+|++|+|+++.++++.|..||+||+|+||||+.+|+.|++.+
T Consensus 166 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~L~~~~~v~~I~fTGS~~~g~~i~~~aa~ 241 (486)
T 1t90_A 166 IALGNTFILKPSERTPLLTEKLVELFEK----AGLPKGVFNVVYGAHDVVNGILEHPEIKAISFVGSKPVGEYVYKKGSE 241 (486)
T ss_dssp HHTTCEEEEECCSSSCHHHHHHHHHHHH----TTCCTTSEEECCCSHHHHHHHHHCTTEEEEEEESCHHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCCChHHHHHHHHHHHH----hCCCCCEEEEEECCHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999987 7 99999999996545666677799999999999999999999877
Q ss_pred -CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccee-EEEcCccCCchhHHHHHHHHHHcCC-------
Q 006484 502 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMET-LLVHKDLACNGALNELVVELQHEGV------- 571 (643)
Q Consensus 502 -~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~r-v~V~~~i~~~~f~~~l~~~~~~~~~------- 571 (643)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++| +|||++ | |+|+++|+++++++.+
T Consensus 242 ~~~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvv~v~~~-~-d~f~~~l~~~~~~~~vG~~~~~~ 319 (486)
T 1t90_A 242 NLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGI-A-DEFMAKLQEKVADIKIGNGLDDG 319 (486)
T ss_dssp TTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHH-H-HHHHHHHHHHHTTCCBSCTTSTT
T ss_pred cCCcEEeccCCCCcEEECCCCCHHHHHHHHHHHHHhCCCCCcccCCeeEEecCC-H-HHHHHHHHHHHHhcccCCCCccC
Confidence 59999999999999999999999999999999999988 9999999 999999 9 8999999998876531
Q ss_pred ---------------------------EE-ecCcc---cccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHH
Q 006484 572 ---------------------------GL-FGGPR---ASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 612 (643)
Q Consensus 572 ---------------------------~~-~g~~~---~~~~-~-p-v-----~~~~~~~eE~FgPvl~v~~~~~~deAi 612 (643)
++ +|+.. ..++ + | | ++|++++||+||||++|++|+|+||||
T Consensus 320 ~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~g~~~~Ptvl~~v~~~~~~~~eEiFGPvl~v~~~~~~~eai 399 (486)
T 1t90_A 320 VFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAI 399 (486)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECSSSSCCSSSSCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCCEECCEEEeCCCCCCHhhcCcccCceEEEEEeCCHHHHH
Confidence 22 24431 1233 3 5 2 357899999999999999999999999
Q ss_pred HHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 613 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 613 ~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
+++|+++|||++||||+|.+++++|++++++
T Consensus 400 ~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~a 430 (486)
T 1t90_A 400 EIANKSEFANGACLFTSNSNAIRYFRENIDA 430 (486)
T ss_dssp HHHHHSSEESEEEEECCBHHHHHHHHHHCCC
T ss_pred HHHhCCCCCeEEEEEcCCHHHHHHHHHhCCc
Confidence 9999999999999999999999999999875
No 44
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A*
Probab=100.00 E-value=3.2e-66 Score=573.77 Aligned_cols=351 Identities=15% Similarity=0.176 Sum_probs=292.0
Q ss_pred HHHcCCce-eeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 269 KVLEGKRV-GTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 269 ~~~~g~~~-GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
+|.+|+.+ +++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|+++|+++++.|++++..
T Consensus 13 nP~tg~~i~~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 85 (510)
T 1ez0_A 13 NAFTGEALPLAFPVHT------EVEVNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPEV- 85 (510)
T ss_dssp CTTTSSEEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred CCCCCCEEEEEECCCC------HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH-
Confidence 35678888 6888887 889999999999999999999999999999999999999999999999888765431
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhccccc---ccccc----cccccCCC-eeEEEEeeeeeeEEEEcCC-Cchh-H
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP---IGQIL----KRTELADG-LILEKTSCPLGVLLIVFES-RPDA-L 417 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~g~~~----~~~~~~~~-~~~~~~~~PlGvv~~I~p~-~P~~-~ 417 (643)
++. .++..+++.++++++..+. .+..+ +.. .+.+ ...+++|+|+|||++|+|| ||.. +
T Consensus 86 ---~a~--------~Ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~ 153 (510)
T 1ez0_A 86 ---RLT--------GEIARTANQLRLFADVVNSGSYHQAILDTPNPTR-APLPKPDIRRQQIALGPVAVFGASNFPLAFS 153 (510)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHHHHHTGGGCEEEECCBTTC-SSSCBCCEEEEEEECSCEEEECCSSCTTTTS
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHhCcccccccccccccc-CCCCCCCceEEEecCcEEEEECCccchhhhh
Confidence 221 2344444444444332211 11111 100 0111 1357889999999999999 5854 3
Q ss_pred --HHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHH
Q 006484 418 --VQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKL 493 (643)
Q Consensus 418 --~~~~~~AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~ 493 (643)
.++++|||++||+||+|||+.||+|+.++++++.+++.++ +|+|++|+|+| +.++++.|..||+||+|+||||+.+
T Consensus 154 ~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~al~~aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~ 233 (510)
T 1ez0_A 154 AAGGDTASALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQLPQAIFTLLQGNQRALGQALVSHPEIKAVGFTGSVGG 233 (510)
T ss_dssp TTSHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEECCSCTHHHHHHHHCTTCCEEEEESCHHH
T ss_pred hhHHHHHHHHHcCCEEEEECCCCchHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHcCCCCCEEEEeCcHHH
Confidence 3999999999999999999999999999999999888888 99999999996 5667777777999999999999999
Q ss_pred HHHHHHhcC-----CCEEEecCccceEEEcCCCCHH--HHHHHHHhhcCCCCC-ccccceeEEEcCc-cCCchhHHHHHH
Q 006484 494 VSQIKESTK-----IPVLGHADGICHVYVDKSANLD--VAKNIVIDAKIDYPA-ACNAMETLLVHKD-LACNGALNELVV 564 (643)
Q Consensus 494 g~~i~~~a~-----~p~~lelGG~~p~iV~~dAdl~--~A~~~iv~~~~~n~g-~C~a~~rv~V~~~-i~~~~f~~~l~~ 564 (643)
||.|++.+. ||+++|||||||+||++|||+| .|++.+++++|.|+| +|+|++|+|||++ +| |+|+++|++
T Consensus 234 G~~i~~~aa~~l~~~pv~lELGGk~p~iV~~dADl~~~~aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l~~ 312 (510)
T 1ez0_A 234 GRALFNLAHERPEPIPFYGELGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFCTKPGVVFALNTPET-QAFIETAQS 312 (510)
T ss_dssp HHHHHHHHHHSSSCCCEEEECCCCCEEEECHHHHHHCTTHHHHHHHHHTGGGGCCTTCCCEEEEESSHHH-HHHHHHHHH
T ss_pred HHHHHHHhhccCCCccEEEECCCCCeEEEeCCCCccHHHHHHHHHHHHHcCCCCCcCCCCEEEEeCCccH-HHHHHHHHH
Confidence 999988763 9999999999999999999999 999999999999998 9999999999999 99 899999998
Q ss_pred HHHHc-------------------------CCEEe-cCccccccc--c-C-----CC---CccccccccCceEEEEEeCC
Q 006484 565 ELQHE-------------------------GVGLF-GGPRASKLL--Q-I-----PE---TRLFHHEYNSMVCTVEIVDD 607 (643)
Q Consensus 565 ~~~~~-------------------------~~~~~-g~~~~~~~~--p-v-----~~---~~~~~eE~FgPvl~v~~~~~ 607 (643)
+++++ |+++. |+. . ++| | | ++ |++++||+||||++|++|+|
T Consensus 313 ~~~~~~~gp~~~~~~~~~~~~~v~~~~~~~Ga~~~~gg~-~-g~~~~Ptvl~~~~~~~~~~~i~~eEiFGPVl~v~~~~~ 390 (510)
T 1ez0_A 313 LIRQQSPSTLLTPGIRDSYQSQVVSRGSDDGIDVTFSQA-E-SPCVASALFVTSSENWRKHPAWEEEIFGPQSLIVVCEN 390 (510)
T ss_dssp HHHHCCCBCCSSHHHHHHHHHHHHHHHTSTTEEEEECCC-C-TTSBCCEEEEEEHHHHHHCGGGGSCCCSSEEEEEEESS
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEecCC-C-CCEecCEEEEecCCccccCHHHcCCccCCeEEEEEeCC
Confidence 88764 23333 443 2 433 5 3 23 89999999999999999999
Q ss_pred HHHHHHHHHccCCCceeEEEecCH--HHHHHHHHhc
Q 006484 608 VRAAIDHIHQHGSAHTDCIVAEDQ--KVAETFLCQV 641 (643)
Q Consensus 608 ~deAi~~aN~~~~GL~a~v~t~d~--~~~~~~~~~l 641 (643)
+||||+++|+++|||++||||+|. ++++++++++
T Consensus 391 ~deai~~aN~~~~gLaa~v~t~d~~~~~a~~~~~~l 426 (510)
T 1ez0_A 391 VADMLSLSEMLAGSLTATIHATEEDYPQVSQLIPRL 426 (510)
T ss_dssp HHHHHHHHHTCCCEEEEEEECCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEEccCcCHHHHHHHHHHH
Confidence 999999999999999999999987 7999999987
No 45
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}
Probab=100.00 E-value=2.5e-66 Score=576.97 Aligned_cols=356 Identities=15% Similarity=0.114 Sum_probs=295.0
Q ss_pred HHHHHcCCcee-eEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 006484 267 IIKVLEGKRVG-TLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 345 (643)
Q Consensus 267 l~~~~~g~~~G-T~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~ 345 (643)
+.+|.+|+.++ ++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++.
T Consensus 44 v~nP~tg~~i~~~~~~~~------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 117 (528)
T 3v4c_A 44 TFASAPAHGPAHDFAVGT------VELVNRACEAAEEAFWTYGYSSRKERAAFLRAIADEIEARAEAITEIGSQETGLPE 117 (528)
T ss_dssp EEECCCSSSCCCEEECCC------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ccCCCCCCEeeeEeCCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH
Confidence 44567888887 887777 88999999999999999999999999999999999999999999999988775532
Q ss_pred HhchhhHHHHHhhcChhHHHHHHHHHHHHhccccc---ccccc----cccccCCCeeEEEEeeeeeeEEEEcCC-CchhH
Q 006484 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP---IGQIL----KRTELADGLILEKTSCPLGVLLIVFES-RPDAL 417 (643)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~g~~~----~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~~~ 417 (643)
.++. .++..+++.++++++..+. .+... +......+...+++|+|+|||++|+|| ||...
T Consensus 118 ----~~a~--------~ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~ 185 (528)
T 3v4c_A 118 ----ARLN--------GERGRTTGQLRLFADHIEKGDYLDRRVDAAMPERQPAPRQEIRLVQRPVGPVAVFGASNFPLAF 185 (528)
T ss_dssp ----HHHH--------HHHHHHHHHHHHHHHHHHHCGGGCCEEECCBTTCSSSCBCCEEEEEEECSCEEEECCSSSTTTT
T ss_pred ----HHHH--------HHHHHHHHHHHHHHHHHhhccccccccccccccccCCCCCcceeEeeCCcEEEEECCCcchHHH
Confidence 1221 2344455555554432211 11111 111011233467899999999999999 58542
Q ss_pred ---HHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHH
Q 006484 418 ---VQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNK 492 (643)
Q Consensus 418 ---~~~~~~AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~ 492 (643)
.++++|||++||+||+|||+.||+|+.++++++.+++.++ ||+|++|+|++ +.++++.|..||+||+|+||||+.
T Consensus 186 ~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~~l~~aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~V~fTGS~~ 265 (528)
T 3v4c_A 186 STAGGDTAAALAAGCPVVVKGHSAHPGTGEIVAEAVDAAIRKTGVHPGVFSLIQGGSRDVGHALVQHPHIKAVGFTGSLA 265 (528)
T ss_dssp STTSHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCHHHHHHHHHCTTCCEEEEESCHH
T ss_pred hhhhhhhHHHHhcCCEEEEECCCCCcHHHHHHHHHHHHHHHhcCCCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEECChH
Confidence 3899999999999999999999999999999999988889 99999999996 556777777899999999999999
Q ss_pred HHHHHHHhc---C--CCEEEecCccceEEEcCCC---CHHHHHHHHHhhcCCCCC-ccccceeEEEcCc-cCCchhHHHH
Q 006484 493 LVSQIKEST---K--IPVLGHADGICHVYVDKSA---NLDVAKNIVIDAKIDYPA-ACNAMETLLVHKD-LACNGALNEL 562 (643)
Q Consensus 493 ~g~~i~~~a---~--~p~~lelGG~~p~iV~~dA---dl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~-i~~~~f~~~l 562 (643)
+|+.|++.+ . ||+++|||||||+||++|| |+|.|++.+++|+|.|+| +|+|++|+|||++ +| |+|+++|
T Consensus 266 ~G~~i~~~aa~~~~~~pv~lElGGk~p~iV~~dAd~~dl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l 344 (528)
T 3v4c_A 266 GGRALFDLCAARPEPIPFFGELGSVNPMFLLPEALKARAETLGQGWAGSLTMGAGQFCTNPGIAVVIEGADA-DRFTTAA 344 (528)
T ss_dssp HHHHHHHHHHHSSSCCCEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHGGGGCCTTCCCEEEEESSHHH-HHHHHHH
T ss_pred HHHHHHHHHhhccCCCceEEecCCCCeEEECCCCChhhHHHHHHHHHHHHHhcCCCccccCcEEEEecccHH-HHHHHHH
Confidence 999999877 3 8999999999999999999 889999999999999998 9999999999997 99 8999999
Q ss_pred HHHHHHc-------------------------CCEEe-cCccccccc--c-C-----CC---CccccccccCceEEEEEe
Q 006484 563 VVELQHE-------------------------GVGLF-GGPRASKLL--Q-I-----PE---TRLFHHEYNSMVCTVEIV 605 (643)
Q Consensus 563 ~~~~~~~-------------------------~~~~~-g~~~~~~~~--p-v-----~~---~~~~~eE~FgPvl~v~~~ 605 (643)
+++++++ |+++. |+.. .++| | | ++ |++++||+||||++|++|
T Consensus 345 ~~~~~~~~~~~~~gp~~~~~~~~~v~~~~~~~Ga~v~~gG~~-~g~~~~PTvl~~~~~~~~~~~i~~eEiFGPVl~V~~~ 423 (528)
T 3v4c_A 345 VEALAKVAPQTMLTDGIAKAYRDGQARFATRNAVKPLLATES-SGRDASPNLFETTGAQFLADHALGEEVFGPLGLVVRV 423 (528)
T ss_dssp HHHHHTCCCEECSCHHHHHHHHHHHHHHHTCTTCEEEECCCC-CTTEECCEEEEEEHHHHHHCGGGGCCCSSSEEEEEEE
T ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHhCCCEEEeCCCc-CCceeccEEEEecCcccccChhhcccccCCeEEEEec
Confidence 9988764 33333 4433 3333 5 3 23 799999999999999999
Q ss_pred CCHHHHHHHHHccCCCceeEEEec--CHHHHHHHHHhcC
Q 006484 606 DDVRAAIDHIHQHGSAHTDCIVAE--DQKVAETFLCQVD 642 (643)
Q Consensus 606 ~~~deAi~~aN~~~~GL~a~v~t~--d~~~~~~~~~~l~ 642 (643)
+|+||||+++|+++|||++||||+ |.+++++|+++++
T Consensus 424 ~~~deAi~~aN~~~~GL~a~v~t~d~d~~~a~~~a~~l~ 462 (528)
T 3v4c_A 424 GSPAEMEELARGFQGQLTATIHMDAGDLETARRLRPVLE 462 (528)
T ss_dssp SSHHHHHHHHHHCCCEEEEEEECCGGGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCceEEEEcCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999 8999999999875
No 46
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}
Probab=100.00 E-value=1.5e-65 Score=565.00 Aligned_cols=347 Identities=15% Similarity=0.154 Sum_probs=293.4
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 347 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~ 347 (643)
.+|.+|+.++++...+ .+++++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 28 ~~P~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~-- 99 (478)
T 3ty7_A 28 INPATEEVIGKVAKGN------KADVDKAVEAADDVYLEFRHTSVKERQALLDKIVKEYENRKDDIVQAITDELGAPL-- 99 (478)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 3467788899988887 88999999999999999999999999999999999999999999999887765432
Q ss_pred chhhHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHH
Q 006484 348 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (643)
Q Consensus 348 g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~A 424 (643)
.++. ..++..+++.++++++..+.. +... +...+++++|+|||++|+|| +|. ++++++++|
T Consensus 100 --~ea~-------~~ev~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 163 (478)
T 3ty7_A 100 --SLSE-------RVHYQMGLNHFVAARDALDNYEFEER-------RGDDLVVKEAIGVSGLITPWNFPTNQTSLKLAAA 163 (478)
T ss_dssp --HHHH-------HTHHHHHHHHHHHHHHHHHHCCSEEE-------ETTEEEEEEECCCEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHHh-------HHHHHHHHHHHHHHHHHHHHhhcccC-------CccceEEecCceEEEEECCCcchHHHHHHHHHHH
Confidence 2221 124556666666665433221 2110 12356789999999999998 474 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhc-
Q 006484 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 501 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a- 501 (643)
|++||+||+|||+.||.|+.++++++.+ + ||+|++|+|++ +.++++.|..||+||+|+||||+.+|+.|++.+
T Consensus 164 LaaGN~VVlKps~~tp~t~~~l~~~~~~----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~v~fTGS~~~G~~i~~~aa 239 (478)
T 3ty7_A 164 FAAGSPVVLKPSEETPFAAVILAEIFDK----VGVPKGVFNLVNGDGAGVGNPLSEHPKVRMMSFTGSGPTGSKIMEKAA 239 (478)
T ss_dssp HHHTCCEEEECCTTSCHHHHHHHHHHHH----HTCCTTTEEECCCCTTTTHHHHHHCTTCCEEEECSCHHHHCC--CSTT
T ss_pred HHcCCeEEEECCCcchHHHHHHHHHHHH----hCcCcCeEEEEECCChHHHHHHHhCCCcCEEEEECcHHHHHHHHHHHH
Confidence 9999999999999999999999999987 6 99999999995 556777787899999999999999999999877
Q ss_pred --CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC--------
Q 006484 502 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 570 (643)
Q Consensus 502 --~~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~-------- 570 (643)
.+|+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 240 ~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~ 318 (478)
T 3ty7_A 240 KDFKKVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAGTRVLVPNKIK-DAFLAELKEQFSQVRVGNPREDG 318 (478)
T ss_dssp TTTCEEECCCCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEETTTH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred hcCCceEEecCCCCCcccCCCCCHHHHHHHHHHHHHHhCCCCccCCCeEEEcHHHH-HHHHHHHHHHHHhccCCCCCCCC
Confidence 39999999999999999999999999999999999998 999999999999999 899999999988642
Q ss_pred --------------------------CEE-ecCc-c----ccccc--c-C-----CCCccccccccCceEEEEEeCCHHH
Q 006484 571 --------------------------VGL-FGGP-R----ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 610 (643)
Q Consensus 571 --------------------------~~~-~g~~-~----~~~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~de 610 (643)
+++ +|+. . ..+++ | | ++|++++||+||||++|++|+|+||
T Consensus 319 ~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPvl~v~~~~~~~e 398 (478)
T 3ty7_A 319 TQVGPIISKKQFDQVQNYINKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDNQMTIAQEEIFGPVMSVITYNDLDE 398 (478)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSSCCTTCCSSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHH
T ss_pred CccCCCcCHHHHHHHHHHHHHHHHCCCEEEecCccCccccCCCceeCCEEEecCCCCCcccCceeECceeEEEecCCHHH
Confidence 233 3441 1 12333 5 2 3588999999999999999999999
Q ss_pred HHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 611 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 611 Ai~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
||+++|+++|||++||||+|.+++++|++++++
T Consensus 399 Ai~~an~~~~gL~a~v~t~d~~~a~~~~~~l~~ 431 (478)
T 3ty7_A 399 AIQIANDTKYGLAGYVIGKDKETLHKVARSIEA 431 (478)
T ss_dssp HHHHHTCSSCCSEEEEECSCHHHHHHHHHHSCS
T ss_pred HHHHHhCCCCCceEEEECCCHHHHHHHHHhCCc
Confidence 999999999999999999999999999999875
No 47
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Probab=100.00 E-value=2.3e-63 Score=553.25 Aligned_cols=350 Identities=16% Similarity=0.178 Sum_probs=285.6
Q ss_pred HHHHc-CCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH
Q 006484 268 IKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEAN-ESLIKVENEADVAAAQ 345 (643)
Q Consensus 268 ~~~~~-g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~-~~~i~~~~~~~~~~~~ 345 (643)
.++.+ ++.++++...+ .+++++|+++|++||+.|+++|.++|.++|++++++|+++ +++|++++..|++++
T Consensus 82 ~~P~~~~~~i~~~~~a~------~~dv~~Av~aA~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~~el~~~~~~e~Gk~- 154 (563)
T 4e3x_A 82 LSPFNHAHKVAKFCYAD------KALLNRAIDAALAARKEWDLKPMADRAQVFLKAADMLSGPRRAEVLAKTMVGQGKT- 154 (563)
T ss_dssp EETTEEEEEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHCCC-
T ss_pred eCCCCCCcEEEEEeCCC------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHcCCC-
Confidence 34555 56678877777 8999999999999999999999999999999999999999 999999887765443
Q ss_pred HhchhhHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHH
Q 006484 346 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 422 (643)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~ 422 (643)
..++..+ ++..+++.++++++..+.. +.... ..+.+...+.++.|+|||++|+|| ||. +..++++
T Consensus 155 ---~~ea~~e-------~v~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~r~p~GVV~~I~PwNfP~~~~~~~~a 222 (563)
T 4e3x_A 155 ---VIQAEID-------AAAELIDFFRFNAKFAVELEGEQPI--SVPPSTNHTVYRGLEGFVAAISPFNFTAIGGNLAGA 222 (563)
T ss_dssp ---HHHHHHH-------TTHHHHHHHHHHHHHHHHHTTCCCC--CCTTEEEEEECCBCSSEEEEECCSSCHHHHHHHHHH
T ss_pred ---HHHHhHH-------HHHHHHHHHHHHHHHHHHhhCCCcc--CCCCCcceEEEecCceEEEEECCchHHHHHHHHHHH
Confidence 2233221 2444555555554332211 11111 012234456678889999999998 585 4568999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHh
Q 006484 423 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 500 (643)
Q Consensus 423 ~AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~ 500 (643)
||| +||+||+|||+.||+|+.++++++.+ + ||+|++|+|++ +.++++.|..||+|++|+||||+.+|+.|++.
T Consensus 223 pAL-aGNtVVlKPs~~tp~sa~~l~~ll~e----AGlP~Gvvnvv~g~g~~~g~~L~~hp~v~~I~FTGSt~vG~~i~~~ 297 (563)
T 4e3x_A 223 PAL-MGNVVLWKPSDTAMLASYAVYRILRE----AGLPPNIIQFVPADGPTFGDTVTSSEHLCGINFTGSVPTFKHLWRQ 297 (563)
T ss_dssp HHH-TTCCEEEECCGGGHHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHTTCTTEEEEEEESCHHHHHHHHHH
T ss_pred Hhh-cCCEEEEECCCCChHHHHHHHHHHHH----hCCCCCeEEEEeCCcHHHHHHHHhCCCcCEEEEECCHHHHHHHHHH
Confidence 999 69999999999999999999999988 6 99999999995 56678888889999999999999999999887
Q ss_pred c---CC------CEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcC
Q 006484 501 T---KI------PVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG 570 (643)
Q Consensus 501 a---~~------p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~ 570 (643)
+ .+ |+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 298 aa~~lk~~~~~prv~lElGGk~p~IV~~dADld~Aa~~iv~~~f~~~GQ~C~A~~rv~V~~si~-d~f~~~l~~~~~~l~ 376 (563)
T 4e3x_A 298 VAQNLDRFRTFPRLAGECGGKNFHFVHSSADVDSVVSGTLRSAFEYGGQKCSACSRLYVPKSLW-PQIKGRLLEEHSRIK 376 (563)
T ss_dssp HHHTTTTCSSCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGH-HHHHHHHHHHHHTCC
T ss_pred HHhhCCccccCCceeccCCCCCceeeCCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEecchH-HHHHHHHHHHHHhcc
Confidence 6 25 499999999999999999999999999999999998 999999999999999 899999999998753
Q ss_pred C------------------------------------EE-ecCccc--cccc--c-C-----CCCccccccccCceEEEE
Q 006484 571 V------------------------------------GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVE 603 (643)
Q Consensus 571 ~------------------------------------~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FgPvl~v~ 603 (643)
+ ++ .|+... .++| | | ++|++++||+||||++|+
T Consensus 377 vGdp~~d~~~~~Gpli~~~~~~rv~~~i~~a~~~~ga~v~~GG~~~~~~G~fv~PTvl~~v~~~~~i~~eEiFGPVl~V~ 456 (563)
T 4e3x_A 377 VGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVY 456 (563)
T ss_dssp BSCTTTCTTCSBCCCSCHHHHHHHHHHHHHHHHCTTEEEEECCCEECSSSCEECCEEEEESCTTCGGGTSCCCSSEEEEE
T ss_pred CCCcccCcCCccCCCcCHHHHHHHHHHHHHHhhcCCCEEEeCCccCCCCCcEecCEEEecCCCCChhhcCCCcCeEEEEE
Confidence 2 11 122211 2333 5 2 468999999999999999
Q ss_pred EeCC--HHHHHHHH-HccCCCceeEEEecCHHHHHHHHHhcC
Q 006484 604 IVDD--VRAAIDHI-HQHGSAHTDCIVAEDQKVAETFLCQVD 642 (643)
Q Consensus 604 ~~~~--~deAi~~a-N~~~~GL~a~v~t~d~~~~~~~~~~l~ 642 (643)
+|+| +||||+++ |+++|||+++|||+|.+++++++++++
T Consensus 457 ~~~d~~~deAi~~ann~s~yGLta~V~t~d~~~~~~~~~~l~ 498 (563)
T 4e3x_A 457 VYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRMLR 498 (563)
T ss_dssp EECGGGHHHHHHHHHHSSSEESEEEEECSCHHHHHHHHHHTT
T ss_pred EECCCCHHHHHHHHHcCCCCCCEEEEEeCCHHHHHHHHHhhh
Confidence 9997 79999999 799999999999999999999999864
No 48
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}
Probab=100.00 E-value=2.6e-63 Score=581.35 Aligned_cols=352 Identities=18% Similarity=0.177 Sum_probs=298.6
Q ss_pred HHHHc-CCceeeEEecCccccccHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 006484 268 IKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 346 (643)
Q Consensus 268 ~~~~~-g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~ 346 (643)
.+|.+ ++.+|++..++ .+++++++++|++||+.|+++|.++|.++|++++++|++|+++|+++++.|.+++.
T Consensus 550 ~nPa~~~~~i~~v~~a~------~~dv~~Av~aA~~A~~~W~~~~~~eRa~iL~~~Adll~~~~~eLa~~~~~E~GK~~- 622 (1026)
T 4f9i_A 550 VNPNKPSEVLGQICQAG------TTEVGDAIAAAKAAFPAWRDTDPRTRAEYLLKAAQAARKRLFELSAWQVLEIGKQW- 622 (1026)
T ss_dssp EETTEEEEEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCH-
T ss_pred eCCCCCCceEEEEeCCC------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh-
Confidence 45565 66778877777 88999999999999999999999999999999999999999999998877665432
Q ss_pred hchhhHHHHHhhcChhHHHHHHHHHHHHhcccccccccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHH
Q 006484 347 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 424 (643)
Q Consensus 347 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~A 424 (643)
.++ ..++..+++.+++++...+......... ...+...+..++|+|||++|+|| ||. +.++++++|
T Consensus 623 ---~ea--------~~Ev~~aid~lr~~a~~~~~~~~~~~~~-~~~g~~~~~~~~PlGVV~~I~PwNfPl~i~~~~~a~A 690 (1026)
T 4f9i_A 623 ---DQA--------YADVTEAIDFLEYYAREMIRLGQPQRVG-HAPGELNHYFYEPKGVAAVIAPWNFPLAISMGMASAA 690 (1026)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHHHHHHHTSCEEEC-CCTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHH
T ss_pred ---hhH--------HHHHHHHHHHHHHHHHHHHHhcCCcccc-CCCCccceeEeecCceEEEeCCCccHHHHHHHHHHHH
Confidence 222 2367777888888776543322111111 12355677889999999999999 484 677999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhcC
Q 006484 425 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 502 (643)
Q Consensus 425 laaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a~ 502 (643)
|++||+||+|||+.||+|+..+++++.+ + +|+|++|+|+| +.++++.|..||+|++|+||||+.+|+.|++.++
T Consensus 691 LaaGNtVVlKPse~tplsa~~l~ell~e----AGlP~gvvnvV~G~g~~vg~~L~~hp~v~~V~FTGSt~vg~~I~~~aa 766 (1026)
T 4f9i_A 691 IVTGNCVVFKPSGITSIIGWHLVELFRE----AGLPEGVFNFTPGRGSVMGDYLVDHPDISLIAFTGSMETGLRIIERAA 766 (1026)
T ss_dssp HHTTCEEEEECCGGGHHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHHHCTTEEEEEEESCHHHHHHHHHHHT
T ss_pred HHcCCEEEEEcCccchHHHHHHHHHHHH----hCcCCCeEEEEecCcHHHHHHHHhCCCCCEEEeCCCHHHHHHHHHHhh
Confidence 9999999999999999999999999998 6 99999999996 5667777778999999999999999999988764
Q ss_pred ---------CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcCC-
Q 006484 503 ---------IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV- 571 (643)
Q Consensus 503 ---------~p~~lelGG~~p~iV~~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~~- 571 (643)
+|+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 767 ~~~~~~~~lkpv~lElGGknp~IV~~dADld~Aa~~iv~saf~~aGQ~C~A~~rl~V~~~i~-d~f~~~L~~~~~~l~vG 845 (1026)
T 4f9i_A 767 KVHPGQANVKKIISEMGGKNAIIIDDDADLDEAVPHVLYSAFGFQGQKCSACSRVIVLDAVY-DKFIERLVSMAKATKVG 845 (1026)
T ss_dssp SCCTTCCSCCEEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGH-HHHHHHHHHHHHHCCBC
T ss_pred cccccccCccceEEecCCCCeEEECCCCCHHHHHHHHHHHHHhCCCCCCCCCceEEecHHHH-HHHHHHHHHHHHhcccC
Confidence 7999999999999999999999999999999999998 999999999999999 8999999999987632
Q ss_pred --------------------------------E-EecCccc-c-ccc--c-C-----CCCccccccccCceEEEEEeCCH
Q 006484 572 --------------------------------G-LFGGPRA-S-KLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 608 (643)
Q Consensus 572 --------------------------------~-~~g~~~~-~-~~~--p-v-----~~~~~~~eE~FgPvl~v~~~~~~ 608 (643)
+ ++|++.. . ++| | | +++.+++||+||||++|++|+|+
T Consensus 846 ~p~d~~t~~Gpvi~~~~~~~v~~~i~~a~~~G~~v~gG~~~~~~G~fv~PTvl~~v~~~~~i~~eEiFGPVl~V~~~~d~ 925 (1026)
T 4f9i_A 846 PSEDPANYMGAVADDKAMKSIKEYAEIGKREGHVLYESPVPAGEGYFVPMTIIGGIKPEHRIAQEEIFGPVLAVMRAKDF 925 (1026)
T ss_dssp CTTSTTCSBCCCSSHHHHHHHHHHHHHHHHHSEEEEECCCCSSSSCCCCCEEEESCCTTSGGGTSCCCSSEEEEEEESSH
T ss_pred CcccccCccccccCHHHHHHHHHHHHHHHhCCeEEecCCcCCCCCceecceeeecCCCCccccCceecCcEEEEEEeCCH
Confidence 1 2343321 1 333 5 2 45889999999999999999999
Q ss_pred HHHHHHHHccCCCceeEEEecCHHHHHHHHHhcCC
Q 006484 609 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDR 643 (643)
Q Consensus 609 deAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l~~ 643 (643)
||||+++|+++|||+++|||+|.+++.++++++++
T Consensus 926 deAI~~aN~t~yGLt~~V~t~d~~~a~~~~~~l~a 960 (1026)
T 4f9i_A 926 DQAIEWANSTQFALTGGIFSRSPEHLAKARREFRV 960 (1026)
T ss_dssp HHHHHHHTCSSCCSEEEEECCCHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCCCeEEEECCCHHHHHHHHHhCCE
Confidence 99999999999999999999999999999999875
No 49
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Probab=100.00 E-value=3.3e-62 Score=544.59 Aligned_cols=348 Identities=16% Similarity=0.158 Sum_probs=281.0
Q ss_pred HHHHcCCceeeEEecCccccccHHhHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 006484 268 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARES-SRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 346 (643)
Q Consensus 268 ~~~~~g~~~GT~i~~~~~~~~~~~~v~~av~~A~~a-~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~ 346 (643)
.+|.+|+.++++... .+++++++++|++| |+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 27 ~nP~tg~~i~~~~~~-------~~dv~~Av~aA~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 98 (534)
T 2y53_A 27 TDPVTGVALVRVSSE-------GLDLARAFSFAREDGGAALRALTYAQRAARLADIVKLLQAKRGDYYAIATANSGTTR- 98 (534)
T ss_dssp ECTTTCCEEEEECCT-------TCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred ECCCCCCEEEEEeCC-------HHHHHHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH-
Confidence 346678878876543 35899999999999 599999999999999999999999999999999887775432
Q ss_pred hchhhHHHHHhhcChhHHHHHHHHHHHHhcccccc--------cccccccccCCCeeEEEEeeee-eeEEEEcCC-Cch-
Q 006484 347 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI--------GQILKRTELADGLILEKTSCPL-GVLLIVFES-RPD- 415 (643)
Q Consensus 347 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~Pl-Gvv~~I~p~-~P~- 415 (643)
.++. .++...++.+++++...+.. |+..+. ..+.....+..++|+ |||++|+|| ||.
T Consensus 99 ---~ea~--------~ev~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~P~~GVv~~I~PwN~P~~ 166 (534)
T 2y53_A 99 ---NDSA--------VDIDGGIFTLSYYAKLGASLGEVHALRDGSAESL-SKDRSFSAQHVLSPTRGVALFINAFNFPSW 166 (534)
T ss_dssp ---HHHH--------HHHHHHHHHHHHHHHHHHTTCSCSEEEEEEEEEC-STTSSEEEEEEEEECSSCEEEECCTTCTTH
T ss_pred ---HHHH--------HHHHHHHHHHHHHHHHHHhccccccccCCccccC-CCCCcccceEEEecCCCEEEEECCCchHHH
Confidence 2222 24555555666555432111 221111 111223457789997 999999999 485
Q ss_pred hHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEeecCcchHhHhhhCCCCccEEEeecCHHHH
Q 006484 416 ALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLV 494 (643)
Q Consensus 416 ~~~~~~~~AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~a-lP~g~v~~v~~~~~~~~~l~~~~~v~~i~fTGs~~~g 494 (643)
+++++++|||++||+||+||||.||+|+..+++++.++ . ||+|++|+|+|+.. +++.+.+++|+|+||||+.+|
T Consensus 167 ~~~~~~a~ALaaGN~VVlKPs~~tp~~~~~l~~l~~~a---G~lP~gvv~vv~g~~~--~l~~~l~~vd~V~FTGS~~~G 241 (534)
T 2y53_A 167 GLWEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDA---GILPPGALSIICGSSA--GLLDQIRSFDVVSFTGSADTA 241 (534)
T ss_dssp HHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHHHHHHH---TCSCTTSEEECCSCCT--TSGGGCCTTCEEEEESCHHHH
T ss_pred HHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHh---CCCCCCeEEEEeCChH--HHHhcccccCEEEEECCHHHH
Confidence 66799999999999999999999999999999999873 3 69999999995321 233332579999999999999
Q ss_pred HHHHHhc-----CCCEEEecCccceEEEcCCC-----CHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHH
Q 006484 495 SQIKEST-----KIPVLGHADGICHVYVDKSA-----NLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELV 563 (643)
Q Consensus 495 ~~i~~~a-----~~p~~lelGG~~p~iV~~dA-----dl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~ 563 (643)
|.|++.+ .||+++|||||||+||++|| |+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+
T Consensus 242 ~~i~~~aa~a~~~k~v~lELGGk~p~iV~~dA~~~~~Dl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~ 320 (534)
T 2y53_A 242 ATLRAHPAFVQRGARLNVQADSLNSAILCADATPDTPAFDLFIKEVVREMTVKSGQKCTAIRRAFVPEAAL-EPVLEALK 320 (534)
T ss_dssp HHHHTSHHHHTTCCEEEEECCCCEEEEECTTCCTTSHHHHHHHHHHHHHHHGGGGCCTTSEEEEEEEGGGH-HHHHHHHH
T ss_pred HHHHHhhhhhcCCCcEEEEcCCCCeEEECCCccccccCHHHHHHHHHHHHHhCCCCcccCCCEEEEeccHH-HHHHHHHH
Confidence 9998754 59999999999999999999 999999999999999998 999999999999999 89999999
Q ss_pred HHHHHcCC---------------------------------EE-ecCcc--------ccccc--c-C----C-C--Cccc
Q 006484 564 VELQHEGV---------------------------------GL-FGGPR--------ASKLL--Q-I----P-E--TRLF 591 (643)
Q Consensus 564 ~~~~~~~~---------------------------------~~-~g~~~--------~~~~~--p-v----~-~--~~~~ 591 (643)
++++++.+ ++ +|+.. ..++| | | + + +.++
T Consensus 321 ~~~~~~~vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~ga~~~~GG~~~~~~~~~~~~g~~~~PTvl~~v~~~~~~~i~ 400 (534)
T 2y53_A 321 AKLAKITVGNPRNDAVRMGSLVSREQYENVLAGIAALREEAVLAYDSSAVPLIDADANIAACVAPHLFVVNDPDNATLLH 400 (534)
T ss_dssp HHHTTCCBBCTTSTTCSBCCCSCHHHHHHHHHHHHHHHTSSEEEEECTTSCCBSCCTTTSCCCCCEEEECSCGGGCSSTT
T ss_pred HHHHhccCCCCCcCCCCccCCCCHHHHHHHHHHHHHHHcCCEEEECCcccccccccCCCCceecCEEEEecCccccCHHH
Confidence 99876532 33 35532 12333 5 3 2 3 4799
Q ss_pred cccccCceEEEEEeC---CH-----HHHHHHHHccCCCceeEEEecCHHHHHHHHHhc
Q 006484 592 HHEYNSMVCTVEIVD---DV-----RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQV 641 (643)
Q Consensus 592 ~eE~FgPvl~v~~~~---~~-----deAi~~aN~~~~GL~a~v~t~d~~~~~~~~~~l 641 (643)
+||+||||++|++|+ |+ ||||+++|+++|||++||||+|.+++++|++++
T Consensus 401 ~eEiFGPVl~v~~~~~~~~~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l 458 (534)
T 2y53_A 401 DVEVFGPVASVAPYRVTTDTNALPEAHAVALARRGQGSLVASIYSNDDAHLGRLALEL 458 (534)
T ss_dssp TCCCSSSEEEEEEECCCCC---CTTHHHHHHHHTTSSEEEEEEECSCHHHHHHHHHHH
T ss_pred hCCCcCCEEEEEEECCCCCcccCCHHHHHHHHhCCCCCceEEEECCCHHHHHHHHHHH
Confidence 999999999999999 99 999999999999999999999999999999998
No 50
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Probab=100.00 E-value=4.6e-62 Score=569.64 Aligned_cols=335 Identities=17% Similarity=0.154 Sum_probs=286.1
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhchhhHHHHHhhcChhHHHHHHH
Q 006484 290 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 369 (643)
Q Consensus 290 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 369 (643)
.+++++++++|++||+.|+++|.++|.++|++++++|++|.++|+++++.|++++. .++ ..++..+++
T Consensus 549 ~~dv~~Av~aA~~A~~~W~~~~~~eR~~iL~~~ad~l~~~~~eLa~~~~~E~GK~~----~ea--------~~Ev~~ai~ 616 (1001)
T 3haz_A 549 PDQAHAAVAAARAGFAGWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTL----DDA--------LSELREAAD 616 (1001)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCH----HHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh----hHH--------HHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999877665432 222 347888888
Q ss_pred HHHHHhcccccc-cccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHHHHhCCEEEEeCCcchHHHHHHH
Q 006484 370 SIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAIL 446 (643)
Q Consensus 370 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~AlaaGN~vi~Kps~~tp~t~~~~ 446 (643)
.+++++...+.. +.... ...+.+...+++++|+|||++|+|| ||. ++++++++||++||+||+||||.||+|+..+
T Consensus 617 ~lr~~a~~a~~~~g~~~~-~~~~~g~~~~~~~~P~GVV~~I~PwNfPl~i~~~~va~ALAAGNtVVlKPse~tp~ta~~l 695 (1001)
T 3haz_A 617 FCRYYAAQGRKLFGSETA-MPGPTGESNALTMRGRGVFVAISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRIAREA 695 (1001)
T ss_dssp HHHHHHHHHHHHHSSCEE-CCCCTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTCHHHHHHH
T ss_pred HHHHHHHHHHhhcCcccc-ccCCCCCceEEEEeCCcEEEEEcCCCChHHHHHHHHHHHHHcCCEEEEecchhhHHHHHHH
Confidence 888888655432 22211 1123456778899999999999999 584 6789999999999999999999999999999
Q ss_pred HHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhc------CCCEEEecCccceEEEc
Q 006484 447 HKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST------KIPVLGHADGICHVYVD 518 (643)
Q Consensus 447 ~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a------~~p~~lelGG~~p~iV~ 518 (643)
++++.+ + +|+|++|+|+| +.+ ++.|..||+||+|+||||+.+|+.|++.+ .+|+++|||||||+||+
T Consensus 696 ~ell~e----AGlP~gvv~vV~G~g~~-g~~L~~~p~Vd~V~FTGSt~vGr~I~~~aA~~~~~l~pv~lElGGknp~IV~ 770 (1001)
T 3haz_A 696 VALLHE----AGIPKSALYLVTGDGRI-GAALTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIAD 770 (1001)
T ss_dssp HHHHHH----HTCCTTTEEECCCCHHH-HHHHHHCTTCCEEEEESCHHHHHHHHHHHHHSSSCCCCEEEECCCCEEEEEC
T ss_pred HHHHHH----hCcCcCcEEEEecCchH-HHHHHhCCCcCEEEecCCHHHHHHHHHHHhcccCCCceEEeecCCcceEEEc
Confidence 999988 6 99999999996 445 77777899999999999999999998764 38999999999999999
Q ss_pred CCCCHHHHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHHHcCCE-------------------------
Q 006484 519 KSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGVG------------------------- 572 (643)
Q Consensus 519 ~dAdl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~~~------------------------- 572 (643)
+|||+|+|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+.
T Consensus 771 ~dADld~Aa~~iv~s~f~naGQ~C~A~~rllV~e~i~-d~f~~~L~~~~~~l~vGdp~d~~t~~Gpli~~~~~~rv~~~i 849 (1001)
T 3haz_A 771 ATALPEQVADDVVTSAFRSAGQRCSALRLLFVQEDVA-DRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAHI 849 (1001)
T ss_dssp TTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTSTTCSBCCCSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCCCceeeccHHHH-HHHHHHHHHHHHhcCCCCcccccCccCCCCCHHHHHHHHHHH
Confidence 999999999999999999998 999999999999999 89999999999876421
Q ss_pred --------EecCccc-ccc-c-c-C---CCCccccccccCceEEEEEeCC--HHHHHHHHHccCCCceeEEEecCHHHHH
Q 006484 573 --------LFGGPRA-SKL-L-Q-I---PETRLFHHEYNSMVCTVEIVDD--VRAAIDHIHQHGSAHTDCIVAEDQKVAE 635 (643)
Q Consensus 573 --------~~g~~~~-~~~-~-p-v---~~~~~~~eE~FgPvl~v~~~~~--~deAi~~aN~~~~GL~a~v~t~d~~~~~ 635 (643)
++|++.. .++ + | | +++.+++||+||||++|++|++ +||||+++|+++|||++||||+|.++++
T Consensus 850 ~~a~~~g~v~gg~~~~~G~fv~PTvl~~~~~~~~~eEiFGPVL~V~~~~~~~ldeAI~~aN~t~yGLta~V~T~d~~~a~ 929 (1001)
T 3haz_A 850 ARMKTEARLHFAGPAPEGCFVAPHIFELTEAGQLTEEVFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHSRIDDSIE 929 (1001)
T ss_dssp HHHHHHSEEEEECCCCSSSCCCCEEEECSSGGGCCSCCCSSEEEEEEECGGGHHHHHHHHHHTCCCSEEEEECSCHHHHH
T ss_pred HHHHhcCeEeccccCCCCcEEeeEEecCCCHHHHhccccCcEEEEEEeCCCCHHHHHHHHHcCCCCceEEEEcCCHHHHH
Confidence 1111111 122 2 5 2 4578999999999999999996 7999999999999999999999999999
Q ss_pred HHHHhcCC
Q 006484 636 TFLCQVDR 643 (643)
Q Consensus 636 ~~~~~l~~ 643 (643)
+|++++++
T Consensus 930 ~~a~~l~a 937 (1001)
T 3haz_A 930 AIIDRVQV 937 (1001)
T ss_dssp HHHHHCCC
T ss_pred HHHHhCCe
Confidence 99999875
No 51
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}
Probab=100.00 E-value=1.2e-60 Score=523.55 Aligned_cols=333 Identities=17% Similarity=0.204 Sum_probs=270.1
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhchhhHHHHHhhcChhHHHHHHH
Q 006484 290 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 369 (643)
Q Consensus 290 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 369 (643)
.+++++++++|++||+.|+++|.++|.++|++++++|++|.++|++++.+|++++ ..++.. .+....++
T Consensus 11 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~e~~~-------~~~~~~~~ 79 (464)
T 3k9d_A 11 IQEVRNLIESANKAQKELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFG----IWQDKV-------IKNVFASK 79 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCS----CHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcC----HHHHHH-------HHHHHHHH
Confidence 5789999999999999999999999999999999999999999999988776543 222221 12334455
Q ss_pred HHHHHhcccccccccccccccCCCeeEEEEeeeeeeEEEEcCC-Cchh-HHHHHHHHHHhCCEEEEeCCcchHHHHHHHH
Q 006484 370 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPDA-LVQIASLAIRSGNGLLLKGGKEAMRSNAILH 447 (643)
Q Consensus 370 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~~-~~~~~~~AlaaGN~vi~Kps~~tp~t~~~~~ 447 (643)
.+.++.+..+..|... .+.+...+++++|+|||++|+|| ||.. .++++++||++||+||+||||.||.|+..++
T Consensus 80 ~~~~~~~~~~~~g~~~----~~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VVlKps~~ap~t~~~l~ 155 (464)
T 3k9d_A 80 HVYNYIKDMKTIGMLK----EDNEKKVMEVAVPLGVVAGLIPSTNPTSTVIYKTLISIKAGNSIVFSPHPNALKAILETV 155 (464)
T ss_dssp HHHHHHTTCCCSEEEE----EETTTTEEEEEEECCEEEEEECSSSHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHH
T ss_pred HHHHhhhcccccceec----cCCCceeEEEEecceEEEEECCCcChHHHHHHHHHHHHHhCCeEEEECCcchHHHHHHHH
Confidence 5555544333333221 12345678889999999999999 6964 5799999999999999999999999999999
Q ss_pred HHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhcCCCEEEecC-ccceEEEcCCCCHH
Q 006484 448 KVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHAD-GICHVYVDKSANLD 524 (643)
Q Consensus 448 ~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a~~p~~lelG-G~~p~iV~~dAdl~ 524 (643)
+++.+++.++ +|+|++|+|++ +.+.++.|..||+||+|+||||+.+.+.++ ...||+ +|+| ||+|+||++|||++
T Consensus 156 ~ll~~~~~~aG~P~gvv~vv~g~~~~~~~~L~~~~~vd~I~fTGs~~v~~~a~-~~~kpv-lelG~G~~p~iV~~dADl~ 233 (464)
T 3k9d_A 156 RIISEAAEKAGCPKGAISCMTVPTIQGTDQLMKHKDTAVILATGGSAMVKAAY-SSGTPA-IGVGPGNGPAFIERSANIP 233 (464)
T ss_dssp HHHHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTTEEEEEECSCHHHHHHHT-TSSSCE-EEBCCCCCEEEECTTSCHH
T ss_pred HHHHHHHHHhCCCCCeEEEEeCCCHHHHHHHHhCCCCCEEEEeCChHHHHHHH-hcCCcE-EeeCCCCCeEEECCCCCHH
Confidence 9999888889 99999999996 455666666789999999999999877664 347999 5666 99999999999999
Q ss_pred HHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHHHH-------HcCCEEecCc----------cc-------
Q 006484 525 VAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQ-------HEGVGLFGGP----------RA------- 579 (643)
Q Consensus 525 ~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~~~-------~~~~~~~g~~----------~~------- 579 (643)
+|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++.. +..+ |++ ..
T Consensus 234 ~Aa~~i~~~~~~n~Gq~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~~~~~~~~---g~~~~~~~~~~gp~i~~~~~~~ 309 (464)
T 3k9d_A 234 RAVKHILDSKTFDNGTICASEQSVVVERVNK-EAVIAEFRKQGAHFLSDAEAVQL---GKFILRPNGSMNPAIVGKSVQH 309 (464)
T ss_dssp HHHHHHHHHHTGGGGCSTTSCCEEEEEHHHH-HHHHHHHHHTTEEECCHHHHHHH---HHHHBCTTSCBCGGGTTCCHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeHHHH-HHHHHHHHHhhhhhcChhhhhhh---cccccCCCCccCcccCHHHHHH
Confidence 999999999999998 999999999999999 799999987631 1100 110 00
Q ss_pred -cccc----c------------CCCCccccccccCceEEEEEeCCHHHHH----HHHHccCCCceeEEEecCHHHHHHHH
Q 006484 580 -SKLL----Q------------IPETRLFHHEYNSMVCTVEIVDDVRAAI----DHIHQHGSAHTDCIVAEDQKVAETFL 638 (643)
Q Consensus 580 -~~~~----p------------v~~~~~~~eE~FgPvl~v~~~~~~deAi----~~aN~~~~GL~a~v~t~d~~~~~~~~ 638 (643)
..++ + ++++..+.||+||||++|++|+|+|||| +++|+++|||++||||+|.+++++|+
T Consensus 310 i~~~~~~a~~~ga~vl~gg~~~v~~~~~~~~E~fgPVl~v~~~~~~~eAi~~ai~~~n~~~~gl~a~i~t~d~~~a~~~~ 389 (464)
T 3k9d_A 310 IANLAGLTVPADARVLIAEETKVGAKIPYSREKLAPILAFYTAETWQEACELSMDILYHEGAGHTLIIHSEDKEIIREFA 389 (464)
T ss_dssp HHHHTTCCCCTTCCEEEEECCCCSTTCGGGSCCCSSEEEEEEESSHHHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHH
T ss_pred HHHHhhhhhcCCCEEEEcCCCCCCCCCcccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHH
Confidence 0000 1 2222345699999999999999999997 79999999999999999999999999
Q ss_pred HhcCC
Q 006484 639 CQVDR 643 (643)
Q Consensus 639 ~~l~~ 643 (643)
+++++
T Consensus 390 ~~l~~ 394 (464)
T 3k9d_A 390 LKKPV 394 (464)
T ss_dssp HHSSE
T ss_pred HhCCE
Confidence 99874
No 52
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=100.00 E-value=2.9e-60 Score=518.92 Aligned_cols=335 Identities=16% Similarity=0.221 Sum_probs=267.7
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhchhhHHHHHhhcChhHHHHHHH
Q 006484 290 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 369 (643)
Q Consensus 290 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 369 (643)
.+++++++++|++||+.|+++|.++|.++|++++++|++|.++|++++..|++++ ..++.. .++..+++
T Consensus 6 ~~~v~~av~~A~~A~~~w~~~~~~~R~~il~~~a~~l~~~~~~la~~~~~e~Gk~----~~e~~~-------~~~~~a~~ 74 (452)
T 3my7_A 6 MAELDAMIARVKKAQEEFATYSQEQVDKIFRAASLAANQARIPLAQQAVEESGMG----IVEDKV-------IKNHFASE 74 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCS----CHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC----HHHHHH-------HHHHHHHH
Confidence 6799999999999999999999999999999999999999999999888776543 223221 13445555
Q ss_pred HHH-HHhcccccccccccccccCCCeeEEEEeeeeeeEEEEcCC-Cch-hHHHHHHHHHHhCCEEEEeCCcchHHHHHHH
Q 006484 370 SIR-ILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAIL 446 (643)
Q Consensus 370 ~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~-~P~-~~~~~~~~AlaaGN~vi~Kps~~tp~t~~~~ 446 (643)
.+. ++.. .+..|.. + .+.+...+.+++|+|||++|+|| ||. +.++++++||++||+||+||||.||.|+..+
T Consensus 75 ~~~~~~~~-~~~~g~~-~---~~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~k~~~ALaaGN~VVlKps~~tp~~~~~~ 149 (452)
T 3my7_A 75 FIYNKYKD-EQTCGIL-E---EDDNLGTMTIAEPVGIICGIVPTTNPTSTAIFKSLISLKTRNGIIFSPHPRAKNSTNDA 149 (452)
T ss_dssp HHHHHHTT-CCCSEEC-----------CEEEEEECCEEEEEECTTSTTHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH
T ss_pred HHHHHhhh-ccccccc-c---CCCCCceEEEecCceEEEEEcCCCChHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHH
Confidence 553 3332 2222321 1 12234457889999999999998 586 4569999999999999999999999999999
Q ss_pred HHHHHHhcccc-cCcCceEeecC-cchHhHhhhCCCCccEEEeecCHHHHHHHHHhcCCCEEEecCccceEEEcCCCCHH
Q 006484 447 HKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLD 524 (643)
Q Consensus 447 ~~l~~~a~~~a-lP~g~v~~v~~-~~~~~~~l~~~~~v~~i~fTGs~~~g~~i~~~a~~p~~lelGG~~p~iV~~dAdl~ 524 (643)
++++++++.++ +|+|++|+|++ +.+.++.|..||+|++|+||||+.+++..+ ...||+++|||||||+||++|||+|
T Consensus 150 ~~~~~~a~~~aG~P~gvv~~v~g~~~~~~~~L~~~p~v~~V~fTGs~~~~~~a~-~~~kp~~~e~gG~~p~iV~~dADl~ 228 (452)
T 3my7_A 150 AKLVLDAAVAAGAPKDIIGWIDQPSVELSNALMKHDDIALILATGGPGMVKAAY-SSGKPAIGVGAGNVPVVIDETADIK 228 (452)
T ss_dssp HHHHHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTTCCEEEECSCHHHHHHHH-TSSSCEEECC--CEEEEECTTSCHH
T ss_pred HHHHHHHHHHcCCCcCcEEEEcCCCHHHHHHHHhCCCccEEEEECcHHHHHHHH-hcCCCEEecCCCCCeEEEeCCCCHH
Confidence 99999988889 99999999996 556677677799999999999999988754 3579999999999999999999999
Q ss_pred HHHHHHHhhcCCCCC-ccccceeEEEcCccCCchhHHHHHHH------------HHHc-------CCEEecCccc-----
Q 006484 525 VAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVE------------LQHE-------GVGLFGGPRA----- 579 (643)
Q Consensus 525 ~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~~~~f~~~l~~~------------~~~~-------~~~~~g~~~~----- 579 (643)
+|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++ ++++ +..++|+...
T Consensus 229 ~Aa~~iv~s~~~~~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~gpli~~~~~~~v~~~i~~~~~~~a~v~G~~~~~~~~~ 307 (452)
T 3my7_A 229 RAVASVLMSKTFDNGVVCASEQAVIVVDEVY-DEVKERFASHKAHVLSKTDADKVRKVLLIDGALNAKIVGQPATAIAEM 307 (452)
T ss_dssp HHHHHHHHGGGGGGGCCTTCEEEEEEEGGGH-HHHHHHHHTTTEEECCHHHHHHHHHHHEETTEECGGGTTCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCccCCCcEEEEcHHHH-HHHHHHHHHhCCCcCCHHHHHHHHHHHHhhcccCCeEecCccchhHHh
Confidence 999999999999998 999999999999999 7999998753 2111 2223344321
Q ss_pred ccc-c-c-C-----------C-CCccccccccCceEEEEEeCCHHHHHHHHHccC----CCceeEEEecCHHHHHH---H
Q 006484 580 SKL-L-Q-I-----------P-ETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHG----SAHTDCIVAEDQKVAET---F 637 (643)
Q Consensus 580 ~~~-~-p-v-----------~-~~~~~~eE~FgPvl~v~~~~~~deAi~~aN~~~----~GL~a~v~t~d~~~~~~---~ 637 (643)
.++ + | + + ++.++ +|+||||++|++|+|+||||+++|++. |||+++|||+|.+++++ |
T Consensus 308 ~G~~v~pt~~vl~~~~~~~v~~~~~~~-~E~FgPVl~v~~~~~~~eAi~~an~~~~~~g~Glta~i~t~d~~~a~~i~~~ 386 (452)
T 3my7_A 308 AGVKVPADTKVLIGEGLGKVSYDDAFA-HEKLSPTLGMFRADNFEDAVAQAVTMVEIGGIGHTSGLYTNQDVNADRIRYF 386 (452)
T ss_dssp HTCCCCTTCCEEEEECSSSCCTTCGGG-SCCSSSEEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEESCTTTCHHHHHHH
T ss_pred CCceeCCCeeEEeeccccCCCCcchhh-cCccCcEEEEEEeCCHHHHHHHHHhcccccCCCCEEEEEcCCHHHHHHHHHH
Confidence 122 2 2 2 1 24444 599999999999999999999999985 99999999999887777 9
Q ss_pred HHhcCC
Q 006484 638 LCQVDR 643 (643)
Q Consensus 638 ~~~l~~ 643 (643)
++++++
T Consensus 387 a~~l~~ 392 (452)
T 3my7_A 387 GDKMKT 392 (452)
T ss_dssp HHHCCC
T ss_pred HHhCCE
Confidence 998875
No 53
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=100.00 E-value=5.7e-42 Score=361.60 Aligned_cols=254 Identities=39% Similarity=0.568 Sum_probs=188.0
Q ss_pred cccceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCcccchh
Q 006484 12 KDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELD 91 (643)
Q Consensus 12 ~~~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~~~~l~ 91 (643)
++++++|||+|||+++++++.++.+++..++++|+.|++.|+++|||||||++.|+..++. +.++..++.
T Consensus 2 ~~~k~iVIKiGGs~l~~~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGgi~~g~~~lg~----~~~~~~l~~------ 71 (367)
T 2j5v_A 2 SDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGY----PELPATIAS------ 71 (367)
T ss_dssp -CCCEEEEEECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTS----CCCCSSHHH------
T ss_pred CCCCEEEEEECcHHhcCCCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHcCC----CCCCCCHHH------
Confidence 4568999999999999876678899999999999999999999999999999988765543 222223332
Q ss_pred HHHHHHhchHHHHHHHHHHhccCCCCcceeEecccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccCCCCCCCCc
Q 006484 92 GKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSG 171 (643)
Q Consensus 92 ~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~ 171 (643)
.++++++||..++.+|...|..+|+++.|++++.+||.++.++.+..+.|+.||+.|+|||+++||.+.. ++.
T Consensus 72 ~qa~aavGq~~l~~~~~~~l~~~G~~~~qvllt~~d~~~~~r~~n~~~~i~~LL~~g~IPIv~end~v~~-------~el 144 (367)
T 2j5v_A 72 KQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVAT-------AEI 144 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECGGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECTTSCC-------GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEecccccCceEEEhHHHHHHHHHHCCCEEEECCCCceec-------ccc
Confidence 3477899999999999999999999999999998888876556565589999999999999999998865 334
Q ss_pred eeecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CCCccceeeeec--ccchhHHhcCCCCCccCCCchHHHHHHHH
Q 006484 172 IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIR--AKHQAEITFGDKSRVGRGGMTAKVNAAYC 248 (643)
Q Consensus 172 ~~~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~-~p~a~~i~~i~~--~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~ 248 (643)
.++|+|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++|++ +|+.++.. ++++.+++|||.||++++..
T Consensus 145 ~~gd~D~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~-~~~s~~gtGgM~~Kl~Aa~~ 223 (367)
T 2j5v_A 145 KVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAG-DSVSGLGTGGMSTKLQAADV 223 (367)
T ss_dssp CCCSHHHHHHHHHHHHTCSEEEEEECC-------------------------------------------CHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhh-ccCCCcCcCccHHHHHHHHH
Confidence 469999999999999999999999999999999995 999999999999 88876543 33446899999999999999
Q ss_pred HHHcCCcEEEEeCCCcchHHHHHcCCceeeEEecC
Q 006484 249 AACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (643)
Q Consensus 249 a~~~gv~v~I~~g~~~~~l~~~~~g~~~GT~i~~~ 283 (643)
|.++|++++|+||+.|+.|.++++|+..||+|.+.
T Consensus 224 a~~~Gv~v~I~~g~~~~~L~~~l~g~~~GT~i~~~ 258 (367)
T 2j5v_A 224 ACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQ 258 (367)
T ss_dssp HHHTTCEEEEEETTSTTHHHHHHHTCCCSEEECCC
T ss_pred HHHcCCCEEEEcCCCchHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999999999998899999876
No 54
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=100.00 E-value=1.3e-39 Score=328.95 Aligned_cols=245 Identities=31% Similarity=0.529 Sum_probs=202.3
Q ss_pred ceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCcccchhHHH
Q 006484 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKA 94 (643)
Q Consensus 15 ~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 94 (643)
|++|||+||++++ +++.++.++++.++++|+.+++. +++|||||||++.+...++. +. ..+ ...++
T Consensus 2 k~iViKlGGs~l~-~~~~~~~~~~~~~~~~i~~l~~~-~~vVlVhgGg~~~~~~~~g~----~~--~~~------~~~~~ 67 (251)
T 2ako_A 2 KRIVVKVGSHVIS-EENTLSFERLKNLVAFLAKLMEK-YEVILVTSAAISAGHTKLDI----DR--KNL------INKQV 67 (251)
T ss_dssp CEEEEEECHHHHB-CSSSBCHHHHHHHHHHHHHHHHH-SEEEEEECCHHHHHHHHCCC----CS--SSH------HHHHH
T ss_pred CEEEEEeCcceeC-CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHhCC----cc--CCc------hHHHH
Confidence 6899999999999 55567788999999999999888 99999999998766544332 21 111 13468
Q ss_pred HHHhchHHHHHHHHHHhccCCCCcceeEecccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccCCCCCCCCceee
Q 006484 95 CAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFW 174 (643)
Q Consensus 95 ~~a~G~~~~~~~~~~~l~~~g~~~~~~~~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~~~~ 174 (643)
+.+++|..++..|...|..+|+++.|+.++.++|.+..++.+..+.|+.||++|+|||++|||.+.. .+..++
T Consensus 68 l~~~~q~~l~~~~~~~l~~~G~~~~~i~~~~~~~~~~~~~~~~~~~i~~ll~~g~ipVi~~~d~v~~-------~~~~~~ 140 (251)
T 2ako_A 68 LAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNAIDMMINLGILPIINENDATAI-------EEIVFG 140 (251)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCCEEEEEECTGGGGCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCC-------HHHHBT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEEeccchhcCcceEehHHHHHHHHHHCCCEEEEeCCCceee-------cceeec
Confidence 9999999999899999999999999988888888665444444589999999999999998886653 222359
Q ss_pred cchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CCCccceeeeecc--cchhHHhcCCCCCccCCCchHHHHHHHHHHH
Q 006484 175 DNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRA--KHQAEITFGDKSRVGRGGMTAKVNAAYCAAC 251 (643)
Q Consensus 175 ~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~-~p~a~~i~~i~~~--e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~ 251 (643)
|+|++|+++|.+|+||+|+|+|||||||++||+ +|++++|++|+++ |+.+++. ++.+.+++|||.+|++++..|++
T Consensus 141 ~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~-~~~~~~~~ggm~~k~~aa~~a~~ 219 (251)
T 2ako_A 141 DNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATI-KTGSEHGTGGIVTKLKAAKFLLE 219 (251)
T ss_dssp TTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC----------CBSCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhc-ccCCCCccCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999995 8999999999998 8876543 22345899999999999999999
Q ss_pred cCCcEEEEeCCCcchHHH--HHcCCceeeEEe
Q 006484 252 AGIPVVITSGFAMDSIIK--VLEGKRVGTLFH 281 (643)
Q Consensus 252 ~gv~v~I~~g~~~~~l~~--~~~g~~~GT~i~ 281 (643)
+|++++|+||+.|+.|.+ +++|+..||+|.
T Consensus 220 ~gv~v~I~~g~~~~~l~~~~~~~g~~~GT~i~ 251 (251)
T 2ako_A 220 HNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE 251 (251)
T ss_dssp TTCEEEEEESSSCHHHHHHHHSCCCCSSEEEC
T ss_pred CCCeEEEEeCCChhhhhhhHHhcCCCCceEeC
Confidence 999999999999999988 899988999873
No 55
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=100.00 E-value=9.4e-36 Score=305.26 Aligned_cols=254 Identities=15% Similarity=0.159 Sum_probs=190.3
Q ss_pred Hhhhcc-cceEEEEeCCcccccCC--CccCHHHHHHHHHHHHHHHHCCC-eEEEEeCChhHhhHHHhhhhhhcCCCcccc
Q 006484 8 RAFVKD-VKRLVVKVGTAVVTRSD--GRLALGRLGALLEQLKELNSQGF-EIILVSSGAVGVGRQRLRYRKLVNSSLADL 83 (643)
Q Consensus 8 ~~~~~~-~~~iVIKlGGs~l~~~~--~~~~~~~l~~~a~~I~~l~~~g~-~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l 83 (643)
|+-+.+ .+++|||+||+++++++ +.++.++++.++++|+.+++.|+ ++|||||||+++...+ ... +.++. +
T Consensus 16 ~~~~~~~~~~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l-~~~-~~~~~---~ 90 (286)
T 3d40_A 16 PRGSHMTPDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAI-RDH-DSTHA---F 90 (286)
T ss_dssp CCSTTSCCSEEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC--------------C---C
T ss_pred hhhhccCCCEEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHc-CCCcc---c
Confidence 444444 35899999999999864 35788899999999999999998 6999999999876654 221 22211 1
Q ss_pred cCcccchhHHHHHHhchHHHHHHHHHHhccCCCCcceeEecccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccC
Q 006484 84 QKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRK 163 (643)
Q Consensus 84 ~~~~~~l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~ 163 (643)
. +...++|+..++..|...|...|+++.++...+.+|...+.+.++.+.|+.+|++|+|||++| |.+...
T Consensus 91 ~--------~~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~t~dg~~~~~~~~i~~lL~~g~IpVi~g-d~~~~~- 160 (286)
T 3d40_A 91 S--------LAGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCTLRNGIPQLRSEVLRDVLDHGALPVLAG-DALFDE- 160 (286)
T ss_dssp T--------THHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEEEETTEEEECCSHHHHHHHTTCEEEEEC-EEEEBT-
T ss_pred c--------hhcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCcccCCeEEehHHHHHHHHHCcCEEEEcC-CeEEcC-
Confidence 1 146677888888899999999999988876654443111133344678999999999999996 555441
Q ss_pred CCCCCCCc-eeecchhHHHHHHhh-cCCCEEEEeccCCccccCCCCCCCccceeeeecccchhHHh--cCCCCCccCCCc
Q 006484 164 APYEDSSG-IFWDNDSLAGLLALE-LKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEIT--FGDKSRVGRGGM 239 (643)
Q Consensus 164 ~~~~~~~~-~~~~~D~~A~~lA~~-L~Ad~li~lTdVdGVy~~~P~~p~a~~i~~i~~~e~~~~~~--~g~~~~~~~ggM 239 (643)
++. .++|+|++|+++|.+ |+||+|+|+|||||||++||+ ++++|++|+++|+++++. .++++.+++|||
T Consensus 161 -----~g~~~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~--~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM 233 (286)
T 3d40_A 161 -----HGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAG--GDTILPEVDARSPEQAYAALWGSSEWDATGAM 233 (286)
T ss_dssp -----TSCEEEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC-----CEECCEEETTSCHHHHHHHHHSCC----CHH
T ss_pred -----CCCEEeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCC--CCcCCcccCHHHHHHHHHhhccccCCcccCcH
Confidence 333 249999999999999 999999999999999999997 789999999998876543 122345889999
Q ss_pred hHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHcC-----Cce-eeEEecC
Q 006484 240 TAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEG-----KRV-GTLFHRD 283 (643)
Q Consensus 240 ~~Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~~g-----~~~-GT~i~~~ 283 (643)
.||++++..++++|++++|+||+.|+.|.+++++ +.. ||+|..+
T Consensus 234 ~~Kl~Aa~~a~~~gv~v~I~~g~~p~~l~~l~t~~~~~~~~~~~t~i~~~ 283 (286)
T 3d40_A 234 HTKLDALVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRITTT 283 (286)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTTCCCGGGGSCGGGSCTTCCCEEEEC-
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCCCCcHHHHhcCcccCcccccceeeeec
Confidence 9999999999999999999999999999989998 665 9999765
No 56
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=100.00 E-value=8.4e-35 Score=302.40 Aligned_cols=255 Identities=17% Similarity=0.136 Sum_probs=190.3
Q ss_pred hcccceEEEEeCCcccccCCC--c--cCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCc
Q 006484 11 VKDVKRLVVKVGTAVVTRSDG--R--LALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKP 86 (643)
Q Consensus 11 ~~~~~~iVIKlGGs~l~~~~~--~--~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~ 86 (643)
|.+++++|||+||+++++++. . ++.++++.++++|+.|++.|+++|||||||+++++.+.. .+..++|.+ ..
T Consensus 1 ~~~~~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~--~~~~~~~t~--~~ 76 (316)
T 2e9y_A 1 MDSGRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEA--FEALPPERP--RQ 76 (316)
T ss_dssp ---CCEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHH--HHTSCTTSC--CC
T ss_pred CCCCCEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHH--cCCCCCCCC--HH
Confidence 456789999999999995442 2 234789999999999999999999999999999975433 233333311 11
Q ss_pred ccchhHHHHHHhchH--HHHHHHHHHhccCCCC------cceeEecccc------------cCc----------chh---
Q 006484 87 QNELDGKACAAVGQS--SLMALYDTLFSQLDVT------SSQLLVTDSD------------FRD----------EDF--- 133 (643)
Q Consensus 87 ~~~l~~~~~~a~G~~--~~~~~~~~~l~~~g~~------~~~~~~t~~~------------~~~----------~~~--- 133 (643)
.+....+.+.|+. .+...|...|...|++ .+|+.++..| +.+ .++
T Consensus 77 --~l~~~~~~~~G~i~~~l~~~l~~~l~~~g~~a~~~~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~ 154 (316)
T 2e9y_A 77 --PLYIATAMTQAWIGLLLKHSLEEELRRRGLNVLVPVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFK 154 (316)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEE
T ss_pred --HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCccccceeeEEEeccccccccccccccccccchhhhhhhhhhcceeee
Confidence 1222233445665 3556788999999987 4566555433 100 001
Q ss_pred -----------------hchHHHHHHHHHhCCCeeEecCCCceeccCCCCCCCC----cee-ecchhHHHHHHhhcCCCE
Q 006484 134 -----------------RKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS----GIF-WDNDSLAGLLALELKADL 191 (643)
Q Consensus 134 -----------------~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~----~~~-~~~D~~A~~lA~~L~Ad~ 191 (643)
..++.+.|+.||++|+|||++|||++... .+.++ ..+ +|+|++|+++|.+|+||+
T Consensus 155 ~~~g~g~r~vv~sp~~i~~v~~~~i~~lL~~g~IpI~~g~~g~pv~---~~~~g~~~g~~~~id~D~~Aa~lA~~l~Ad~ 231 (316)
T 2e9y_A 155 RDPRGGFRRVVPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVV---ERPGGVLEPVEAVVDKDLASSLLATQLNADL 231 (316)
T ss_dssp ECTTSSEEEEECCCCEEEETTHHHHHHHHHHCSEEEECGGGCEEEE---ECTTSCEEECSCCCCHHHHHHHHHHHTTCSE
T ss_pred ccccccceecccCCCcceeehHHHHHHHHHCCCEEEEECCCCCCee---ECCCCCeecceeeeCHHHHHHHHHHHcCCCE
Confidence 11468899999999999999998866531 11133 222 699999999999999999
Q ss_pred EEEeccCCccccCCCCCCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHHHHHHHcCC-cEEEEeCCCcchHHHH
Q 006484 192 LVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGI-PVVITSGFAMDSIIKV 270 (643)
Q Consensus 192 li~lTdVdGVy~~~P~~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv-~v~I~~g~~~~~l~~~ 270 (643)
|+|+|||||||+ ||++|++++|++|+++|+.+++..+ .+.+|||.||+++|..++++|+ +++|+| ++.+.++
T Consensus 232 LiilTdVdGVy~-dp~~p~a~~i~~i~~~e~~~~~~~g---~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~---~~~l~~~ 304 (316)
T 2e9y_A 232 LVILTDVPGVAV-NYGREGERWLRRAAASELKKYLREG---HFPPGSMGPKVEAAISFVERTGKPAVIGS---LEEARQV 304 (316)
T ss_dssp EEEEESSSSCEE-TTTSTTCEECSEEEHHHHHHHHHTT---CSCTTTHHHHHHHHHHHHHHHCSCEEEEE---STTHHHH
T ss_pred EEEEeCchHhhC-CCCCCCCcCCcEEcHHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHcCCCeEEECc---HHHHHHH
Confidence 999999999999 6778999999999999998876543 4778999999999999999999 599998 5668888
Q ss_pred HcCCceeeEEec
Q 006484 271 LEGKRVGTLFHR 282 (643)
Q Consensus 271 ~~g~~~GT~i~~ 282 (643)
++| ..||+|.+
T Consensus 305 l~g-~~GT~i~~ 315 (316)
T 2e9y_A 305 LSL-QAGTVVML 315 (316)
T ss_dssp HTT-SSSEEEEC
T ss_pred HcC-CCCeEEec
Confidence 888 78999865
No 57
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=4.1e-35 Score=297.82 Aligned_cols=254 Identities=17% Similarity=0.222 Sum_probs=174.2
Q ss_pred cceEEEEeCCcccccCCC--c-cCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCcccch
Q 006484 14 VKRLVVKVGTAVVTRSDG--R-LALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNEL 90 (643)
Q Consensus 14 ~~~iVIKlGGs~l~~~~~--~-~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~~~~l 90 (643)
+|++|||+||+++++++. . ++.+.+++++++|+.++ +.++|||||||+++...+ +. .+++++|..-+... -
T Consensus 2 ~k~iVIKlGG~~l~~~~~~~~~~~~~~l~~l~~~i~~l~--~~~~vlVhGGG~~~~~~~-~~-~gi~~~~~~~~g~~--~ 75 (269)
T 3ll9_A 2 SHMIILKLGGSVITRKDSEEPAIDRDNLERIASEIGNAS--PSSLMIVHGAGSFGHPFA-GE-YRIGSEIENEEDLR--R 75 (269)
T ss_dssp -CCEEEEECHHHHEECCSSSCEECHHHHHHHHHHHHHHC--CSSEEEEECCGGGTHHHH-HH-HTTTSCCCSHHHHH--H
T ss_pred CCEEEEEEChhheecCccccccccHHHHHHHHHHHHHhc--CCCEEEEECCcHHHHHHH-HH-cCCCcccccCcccc--c
Confidence 589999999999998753 3 77888999999999886 589999999999866544 32 34554443110000 0
Q ss_pred hHHHHHHhch--HHHHHHHHHHhccCCCCcceeEecccccCcch-hhchHHHHHHHHHhCCCeeEecCCCceeccCCCCC
Q 006484 91 DGKACAAVGQ--SSLMALYDTLFSQLDVTSSQLLVTDSDFRDED-FRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYE 167 (643)
Q Consensus 91 ~~~~~~a~G~--~~~~~~~~~~l~~~g~~~~~~~~t~~~~~~~~-~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~ 167 (643)
...++....+ ..+...+...|...|+++.++...+..+...+ ....+.+.|+.+|++|+|||+++ |.+..
T Consensus 76 ~~~G~rvT~~~~~~ln~~l~~~L~~~G~~a~~l~g~~~~~~~~g~v~~v~~~~i~~lL~~g~ipVi~~-~~~~~------ 148 (269)
T 3ll9_A 76 RRFGFALTQNWVKKLNSHVCDALLAEGIPAVSMQPSAFIRAHAGRISHADISLIRSYLEEGMVPVVYG-DVVLD------ 148 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEEEETTEEEEECCHHHHHHHHTTCEEEEEC-EEEEB------
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHCCCcEEEEcchHcCeEecCeeeeecHHHHHHHHHCCCEEEECC-CEEec------
Confidence 0011111110 12333567888889988776532222111111 12234688999999999999985 44443
Q ss_pred CC--Cce-eecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCchHHH
Q 006484 168 DS--SGI-FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKV 243 (643)
Q Consensus 168 ~~--~~~-~~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl 243 (643)
.+ +.. ++|+|++|+++|.+|+||+|+|+|||||||++||+ +|++++|++++++|+.+++. ++.+.+++|||.||+
T Consensus 149 ~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~-~~~~~~~tgGM~~Kl 227 (269)
T 3ll9_A 149 SDRRLKFSVISGDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLD-GTLNTDVTGGMVGKI 227 (269)
T ss_dssp SCTTTSEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC--------------------SHHH
T ss_pred ccccCcceecchHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhc-ccCCCcCcCCcHHHH
Confidence 13 344 49999999999999999999999999999999996 89999999999999976554 323458999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCcchHHHHHcCCce-eeEEe
Q 006484 244 NAAYCAACAGIPVVITSGFAMDSIIKVLEGKRV-GTLFH 281 (643)
Q Consensus 244 ~aa~~a~~~gv~v~I~~g~~~~~l~~~~~g~~~-GT~i~ 281 (643)
++|..++++|++++|+||+.|+.|.++++|+.. ||+|.
T Consensus 228 ~aa~~a~~~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 228 RELLLLAEKGVESEIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp HHHHHHHHTTCCEEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred HHHHHHHhCCCeEEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 999999999999999999999999999999988 99986
No 58
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=100.00 E-value=8e-35 Score=300.69 Aligned_cols=245 Identities=24% Similarity=0.329 Sum_probs=186.8
Q ss_pred cceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCccc-ccCcc-cchh
Q 006484 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ-NELD 91 (643)
Q Consensus 14 ~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~-l~~~~-~~l~ 91 (643)
++++|||+||++++++ +.+..++++|+.|++.|+++|||||||++++..+.. .+..++|.+ ++.+. ..+.
T Consensus 36 ~k~iVIKlGGs~l~~~------~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~--~~~~~~~~~g~R~t~~~~l~ 107 (298)
T 2rd5_A 36 GKTIVVKYGGAAMTSP------ELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQ--LNIPAEFRDGLRVTDATTME 107 (298)
T ss_dssp TCEEEEEECTHHHHCH------HHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHH--TTCCCCEETTEECBCHHHHH
T ss_pred CCEEEEEECchhhCCh------hHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHH--cCCCccccCCcccCCHHHHH
Confidence 6899999999999874 357899999999999999999999999999876533 233333322 22221 1122
Q ss_pred HHHHHHhchHHHHHHHHHHhccCCCCcc-------eeEeccc-----ccCcchhh-chHHHHHHHHHhCCCeeEecCCCc
Q 006484 92 GKACAAVGQSSLMALYDTLFSQLDVTSS-------QLLVTDS-----DFRDEDFR-KQLYDTVQSLLDLRVIPIFNENDA 158 (643)
Q Consensus 92 ~~~~~a~G~~~~~~~~~~~l~~~g~~~~-------~~~~t~~-----~~~~~~~~-~~~~~~i~~ll~~g~iPVv~g~d~ 158 (643)
...+.+.|+... .+...|.+.|+++. +++.+.. |+...+.+ ..+.+.|+.+|++|+|||+++
T Consensus 108 ~~~~~~~G~~n~--~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~--- 182 (298)
T 2rd5_A 108 IVSMVLVGKVNK--NLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIAS--- 182 (298)
T ss_dssp HHHHHHHHTHHH--HHHHHHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEEEECGGGHHHHHHTTCEEEEES---
T ss_pred HHHHHHhchHHH--HHHHHHHhCCCCccccChHHCCEEEEEeCCccccCCcceEEEEECHHHHHHHHhCCCEEEEcC---
Confidence 222333576643 46688888887642 3344322 33322221 234788999999999999974
Q ss_pred eeccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCCCccceeeeecccchhHHhcCCCCCccCC
Q 006484 159 VSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRG 237 (643)
Q Consensus 159 v~~~~~~~~~~~~~~-~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~~p~a~~i~~i~~~e~~~~~~~g~~~~~~~g 237 (643)
+.. +..|..+ +|+|++|+.+|.+|+||+|+|+|||||||++||+ | +++|++|+++|+.+++..+ .++|
T Consensus 183 v~~-----~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~-~-a~~i~~is~~e~~~~~~~g----~~~g 251 (298)
T 2rd5_A 183 VAA-----DDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKED-P-SSLIKEIDIKGVKKMIEDG----KVAG 251 (298)
T ss_dssp EEE-----CTTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSEESSSSC-T-TSEECEEEHHHHHHHHHTT----SSCT
T ss_pred eeE-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCC-C-CCCcccCCHHHHHHHHHCC----CCCC
Confidence 211 1245556 7999999999999999999999999999999996 5 8999999999998877654 7799
Q ss_pred CchHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHHcCCceeeEEec
Q 006484 238 GMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHR 282 (643)
Q Consensus 238 gM~~Kl~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~~g~~~GT~i~~ 282 (643)
||.||+++|..++++|++ ++|+||+.|+.| .++++++..||+|.+
T Consensus 252 GM~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~ 298 (298)
T 2rd5_A 252 GMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG 298 (298)
T ss_dssp THHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred chHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence 999999999999999998 999999999998 899999889999863
No 59
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=100.00 E-value=1.6e-34 Score=298.75 Aligned_cols=244 Identities=20% Similarity=0.244 Sum_probs=184.5
Q ss_pred cceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCccc-ccCccc-chh
Q 006484 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQN-ELD 91 (643)
Q Consensus 14 ~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~-l~~~~~-~l~ 91 (643)
++++||||||+++++++ .+..++++|+.|++.|+++|||||||++++..+.. .+..+.|.+ ++.+.. .+.
T Consensus 25 ~k~iViKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~--~~~~~~~~~g~R~t~~~~l~ 96 (299)
T 2ap9_A 25 GKVVVVKYGGNAMTDDT------LRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRR--LGIEGDFKGGFRVTTPEVLD 96 (299)
T ss_dssp TCEEEEEECTHHHHSHH------HHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHH--HTCCCCCSSSSCCBCHHHHH
T ss_pred CCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHH--cCCcccccCCcccCCHHHHH
Confidence 57999999999998743 57899999999999999999999999999876533 233333322 222211 111
Q ss_pred HHHHHHhchHHHHHHHHHHhccCCCCcceeE------eccccc--------Ccchhh----chHHHHHHHHHhCCCeeEe
Q 006484 92 GKACAAVGQSSLMALYDTLFSQLDVTSSQLL------VTDSDF--------RDEDFR----KQLYDTVQSLLDLRVIPIF 153 (643)
Q Consensus 92 ~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~------~t~~~~--------~~~~~~----~~~~~~i~~ll~~g~iPVv 153 (643)
...+.+.|+ +...+...|.+.|+++..+. ++...+ .+.+++ .++.+.|+.+|++|+|||+
T Consensus 97 ~~~~~~~G~--l~~~l~~~L~~~g~~av~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVv 174 (299)
T 2ap9_A 97 VARMVLFGQ--VGRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVV 174 (299)
T ss_dssp HHHHHHHHT--HHHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhhH--HHHHHHHHHHhCCCCceEechhHCCEEEEEecccccccccCCCCcceeEEEecHHHHHHHHhCCCeEEE
Confidence 112333455 34457899999998764321 111100 011111 1457899999999999999
Q ss_pred cCCCceeccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCCCccceeeeecccchhHHhcCCCC
Q 006484 154 NENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKS 232 (643)
Q Consensus 154 ~g~d~v~~~~~~~~~~~~~~-~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~~p~a~~i~~i~~~e~~~~~~~g~~~ 232 (643)
++ +.. +..|..+ +|+|++|+.+|.+|+||+|+|+|||||||++||+ ++++|++|+++|+.+++.
T Consensus 175 ~~---v~~-----~~~G~~~~l~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~--~~~~i~~is~~e~~~l~~----- 239 (299)
T 2ap9_A 175 ST---LAP-----DADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPD--RDSLVSEIDTGTLAQLLP----- 239 (299)
T ss_dssp ES---EEE-----CTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTC--TTCEESEEEHHHHHHHGG-----
T ss_pred CC---eeE-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCC--CCcChhhcCHHHHHHHHH-----
Confidence 85 111 1244556 7999999999999999999999999999999986 368999999999987654
Q ss_pred CccCCCchHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHHcCCceeeEEecC
Q 006484 233 RVGRGGMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (643)
Q Consensus 233 ~~~~ggM~~Kl~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~~g~~~GT~i~~~ 283 (643)
+++|||.||+++|..++++|++ ++|+||+.|+.+ .++++++..||+|.++
T Consensus 240 -~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~ 291 (299)
T 2ap9_A 240 -TLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRG 291 (299)
T ss_dssp -GSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECC
T ss_pred -hhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecC
Confidence 6799999999999999999999 999999999987 8899999999999876
No 60
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=100.00 E-value=2.8e-34 Score=298.66 Aligned_cols=246 Identities=19% Similarity=0.300 Sum_probs=187.8
Q ss_pred cceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCccc-ccCcc-cchh
Q 006484 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ-NELD 91 (643)
Q Consensus 14 ~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~-l~~~~-~~l~ 91 (643)
++++|||+||++++++ +.+..++++|+.|++.|+++|||||||++++..+.. .++.++|.+ ++.+. ..+.
T Consensus 49 ~k~iVIKlGGs~l~~~------~~~~~l~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~--~g~~~~~~~g~Rvt~~~~l~ 120 (321)
T 2v5h_A 49 GRTVVVKYGGAAMKQE------ELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGR--VGIEPQFHNGLRVTDADTME 120 (321)
T ss_dssp TCEEEEEECTHHHHSH------HHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHH--TTCCCCBSSSSBCBCHHHHH
T ss_pred CCeEEEEECchhhCCc------hHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH--cCCCccccCCcccCCHHHHH
Confidence 5799999999999874 357899999999999999999999999999875532 234433322 22111 1222
Q ss_pred HHHHHHhchHHHHHHHHHHhccCCCCc-------ceeEeccc----ccCcchhhc-hHHHHHHHHHhCCCeeEecCCCce
Q 006484 92 GKACAAVGQSSLMALYDTLFSQLDVTS-------SQLLVTDS----DFRDEDFRK-QLYDTVQSLLDLRVIPIFNENDAV 159 (643)
Q Consensus 92 ~~~~~a~G~~~~~~~~~~~l~~~g~~~-------~~~~~t~~----~~~~~~~~~-~~~~~i~~ll~~g~iPVv~g~d~v 159 (643)
...+.+.|+... .+...|..+|+++ ++++.+.. |+...+.+. .+.+.|+.+|++|+|||+++ +
T Consensus 121 ~~~~~~~G~in~--~l~~~L~~~g~~a~gl~~~~a~~l~a~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~---v 195 (321)
T 2v5h_A 121 VVEMVLVGRVNK--DIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISS---V 195 (321)
T ss_dssp HHHHHHHHTHHH--HHHHHHHHHTCCEEEECTTGGGSEEEEECSSCSSBSBEEEEEECGGGTHHHHHTTCEEEEES---E
T ss_pred HHHHHHhChHHH--HHHHHHHhCCCCeeeeChhhccEEEeecCCCccccccceeEEecHHHHHHHHHCCCeEEEeC---c
Confidence 222334677653 3556777777553 24444432 444333322 34788999999999999973 2
Q ss_pred eccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCCCccceeeeecccchhHHhcCCCCCccCCC
Q 006484 160 STRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGG 238 (643)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~~p~a~~i~~i~~~e~~~~~~~g~~~~~~~gg 238 (643)
.. +..|..+ +|+|++|+.+|.+|+||+|+|+|||||||++||+ ++++|++|+++|+.+++..+ .++||
T Consensus 196 ~~-----~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~--~a~~i~~is~~e~~~l~~~g----~~~gG 264 (321)
T 2v5h_A 196 AA-----DENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKR--PESLIPRLNIPQSRELIAQG----IVGGG 264 (321)
T ss_dssp EE-----CTTSCEEECCHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTC--TTCBCCEEEHHHHHHHHHTT----SSCTT
T ss_pred eE-----CCCCCEEEeCHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCC--CCeeeeEEcHHHHHHHHhCC----CCcCc
Confidence 21 1244567 5999999999999999999999999999999986 48999999999998876643 77999
Q ss_pred chHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHHcCCceeeEEecC
Q 006484 239 MTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (643)
Q Consensus 239 M~~Kl~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~~g~~~GT~i~~~ 283 (643)
|.||+++|..|+++|++ ++|+||+.|+.| .++++++..||+|.+.
T Consensus 265 M~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~ 311 (321)
T 2v5h_A 265 MIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS 311 (321)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECC
Confidence 99999999999999999 999999999998 8899988899999876
No 61
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=100.00 E-value=2.9e-34 Score=296.37 Aligned_cols=263 Identities=17% Similarity=0.201 Sum_probs=177.6
Q ss_pred hhhHhhhcccceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhh-hcCCCcccc
Q 006484 5 DSSRAFVKDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRK-LVNSSLADL 83 (643)
Q Consensus 5 ~~~~~~~~~~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~-~~~~~~~~l 83 (643)
-++++..+.||+||||+||++|.++. ..+.++++.++++|+.|++.|+++|||||||||+|..+.++.. .....+ .
T Consensus 15 ~~~~~d~K~MkRIVIklGGnAL~~~~-~~q~~~~~~~a~~Ia~L~~~G~~vVvVHGgGPQVG~i~~~l~~~~~~~~~--~ 91 (332)
T 4axs_A 15 GHIDDDDKHMSRIVIALGGNALGDNP-SQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEK--T 91 (332)
T ss_dssp -----------CEEEEECGGGGCSSH-HHHHHHTHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTTTTSC--C
T ss_pred ccccccccCcceEEEEEChhhcCCCh-HHHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHHhccccCC--C
Confidence 34667777889999999999998642 2345677899999999999999999999999999986543321 111111 1
Q ss_pred cCcccchhHHHHHHhchH----HHHHHHHHHhccCCCCc------ceeEecccc--cCc---------------------
Q 006484 84 QKPQNELDGKACAAVGQS----SLMALYDTLFSQLDVTS------SQLLVTDSD--FRD--------------------- 130 (643)
Q Consensus 84 ~~~~~~l~~~~~~a~G~~----~~~~~~~~~l~~~g~~~------~~~~~t~~~--~~~--------------------- 130 (643)
... ++ +.+.+.+|. .+...+.+.|...++.. .|++++..| |.+
T Consensus 92 ~~~--~l--~~~~a~tqg~ig~~l~~~l~~~l~~~gi~~~v~~~vtqv~V~~~D~af~~p~K~iG~~~~~~ea~~l~~~~ 167 (332)
T 4axs_A 92 ALV--PF--AEAGGMSQGYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSSKEIAEANNPN 167 (332)
T ss_dssp CCC--CH--HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCEEEECTTCHHHHSCCEECSCCCC--------CTT
T ss_pred CCc--hh--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeeeecccchhhhCcCceeccccCHHHHHHHHhcC
Confidence 111 11 122222222 13334556666666542 244443322 100
Q ss_pred --------chhh----------chHHHHHHHHHhCCCeeEecCCCceeccCCCCCCCCce-eecchhHHHHHHhhcCCCE
Q 006484 131 --------EDFR----------KQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI-FWDNDSLAGLLALELKADL 191 (643)
Q Consensus 131 --------~~~~----------~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~~-~~~~D~~A~~lA~~L~Ad~ 191 (643)
.+++ .++.+.|..|+++|+|||..|++++......+...|.. ++|+|++|+.+|.+|+||+
T Consensus 168 ~~~~~~~~~g~rrvV~sp~p~~ive~~~I~~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~vid~D~~Aa~lA~~l~Ad~ 247 (332)
T 4axs_A 168 SVIVEDAGRGFRKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADI 247 (332)
T ss_dssp SCCC--------CEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEESSSCEEECSSCCCHHHHHHHHHHHTTCSE
T ss_pred CEEEEccCCCceEECCCCCCceeecHHHHHHhhcCCeEEEecccCCCCccccCCcccCceeeechHHHHHHHHHHhCCce
Confidence 1111 14578999999999999988766554432222112333 4999999999999999999
Q ss_pred EEEeccCCccccCCCCCCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHHHHHHHcCCc--EEEEeCCCcchHHH
Q 006484 192 LVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIP--VVITSGFAMDSIIK 269 (643)
Q Consensus 192 li~lTdVdGVy~~~P~~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv~--v~I~~g~~~~~l~~ 269 (643)
|+|||||||||+++| +|++++|++++.+|+.+++..| .+++|||.||++||..+++.|+. ++|.+ ++.+.+
T Consensus 248 LiiLTdV~gv~~~~~-~~~~~~i~~it~~e~~~~~~~g---~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~---~~~~~~ 320 (332)
T 4axs_A 248 FVVLTAVDYVYVDFN-KPTQKALKTVDVKALNNFINQD---QFAKGSMLPKIKAAMGFVNGHPNRSAIIAD---LSKVED 320 (332)
T ss_dssp EEEECSCSSCEESTT-STTCEECSSCBHHHHHHHHHTT---CSCTTTTHHHHHHHHHHHTTCTTCEEEEEC---STTHHH
T ss_pred EEEEecCCceEcCCC-CcchhhcccCCHHHHHHHHHCC---CcCcCCcHHHHHHHHHHHHhCCCcEEEECC---HHHHHH
Confidence 999999999999887 6888999999999999888764 47899999999999999998764 66654 667888
Q ss_pred HHcCCceeeEEec
Q 006484 270 VLEGKRVGTLFHR 282 (643)
Q Consensus 270 ~~~g~~~GT~i~~ 282 (643)
++.|+ .||+|.+
T Consensus 321 ~l~g~-~GT~IvA 332 (332)
T 4axs_A 321 ALKGL-SGTKIIA 332 (332)
T ss_dssp HTTTS-SSEEEBC
T ss_pred HHCCC-CCcEEeC
Confidence 88886 6999864
No 62
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=100.00 E-value=8.7e-34 Score=287.26 Aligned_cols=218 Identities=21% Similarity=0.309 Sum_probs=170.5
Q ss_pred ccceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCccc-ccCcccchh
Q 006484 13 DVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQNELD 91 (643)
Q Consensus 13 ~~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~-l~~~~~~l~ 91 (643)
|+|++|||+||+++++. ++.++++|+.|++.|+++|||||||++++..+.. .+++++|.+ ++.+.
T Consensus 35 m~k~iVIKiGGs~l~~~--------~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~--lg~~~~~~~G~Rvtd---- 100 (279)
T 3l86_A 35 MKDIIVIKIGGVASQQL--------SGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEE--NQVPVKKINGLRVTS---- 100 (279)
T ss_dssp CCCEEEEEECTTGGGSC--------CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHH--TTCCCCEETTEECBC----
T ss_pred CCceEEEEEChHHHHhH--------HHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHH--cCCCCccCCCcccCc----
Confidence 34799999999999864 3789999999999999999999999999986643 345555544 22322
Q ss_pred HHHHHHhchHHHH----HHHHHHhccCCCCccee------Eeccccc-----Ccchh-hchHHHHHHHHHhCCCeeEecC
Q 006484 92 GKACAAVGQSSLM----ALYDTLFSQLDVTSSQL------LVTDSDF-----RDEDF-RKQLYDTVQSLLDLRVIPIFNE 155 (643)
Q Consensus 92 ~~~~~a~G~~~~~----~~~~~~l~~~g~~~~~~------~~t~~~~-----~~~~~-~~~~~~~i~~ll~~g~iPVv~g 155 (643)
++++..+ +..++ ..|...|..+|+++.++ +++..++ ...+. ..++.+.|+.||++|+|||+++
T Consensus 101 ~~~l~~v-~~~l~G~ln~~i~~~L~~~G~~a~~l~g~dg~llta~~~~~~d~g~vG~i~~v~~~~i~~lL~~g~IPVi~~ 179 (279)
T 3l86_A 101 KDDMVLV-SHALLDLVGKNLQEKLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHINKRVIEEFLENRQIPILAS 179 (279)
T ss_dssp HHHHHHH-HHHHHHTTHHHHHHHHHHTTCCEEECSGGGGGTEEEEESCHHHHBSBEEEEEECHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhCCCCEEEEecCcCCEEEeeccCccccCcccccchhhHHHHHHHHhCCcEEEECC
Confidence 2344444 43333 46789999999998887 5554433 11111 1245899999999999999986
Q ss_pred CCceeccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCCCccceeeeecccchhHHhcCCCCCc
Q 006484 156 NDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRV 234 (643)
Q Consensus 156 ~d~v~~~~~~~~~~~~~~-~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~~p~a~~i~~i~~~e~~~~~~~g~~~~~ 234 (643)
.++ +..|..+ +|+|++|+++|.+|+||+|+|+|||||||++ +++|++|+++|+.+++..+ +
T Consensus 180 -v~~-------~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~d------~~~I~~i~~~e~~~l~~~~----~ 241 (279)
T 3l86_A 180 -LGY-------SKEGDMLNINADYLATAVAVALAADKLILMTNVKGVLEN------GAVLEKITSHQVQEKIDTA----V 241 (279)
T ss_dssp -EEE-------CTTSCEEECCHHHHHHHHHHHTTCSEEEEECSSSSCEET------TEECCEEEGGGSHHHHHTT----S
T ss_pred -cEE-------CCCCCEeecCHHHHHHHHHHHcCCCEEEEEeCCCccccC------CEehhhccHHHHHHHHhCC----C
Confidence 222 1245566 7999999999999999999999999999953 7899999999999877643 7
Q ss_pred cCCCchHHHHHHHHHHHcCCc-EEEEeCCC
Q 006484 235 GRGGMTAKVNAAYCAACAGIP-VVITSGFA 263 (643)
Q Consensus 235 ~~ggM~~Kl~aa~~a~~~gv~-v~I~~g~~ 263 (643)
++|||.||+++|..|++.|++ ++|+|++.
T Consensus 242 ~tGGM~~Kl~aa~~a~~~Gv~~v~I~~~~~ 271 (279)
T 3l86_A 242 ITAGMIPKIESAAKTVAAGVGQVLIGDNLL 271 (279)
T ss_dssp SCTTHHHHHHHHHHHHHTTCSEEEEESSSS
T ss_pred CcCcHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 899999999999999999999 99999865
No 63
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=100.00 E-value=3e-34 Score=288.39 Aligned_cols=238 Identities=16% Similarity=0.199 Sum_probs=169.9
Q ss_pred cceEEEEeCCcccccCC--CccCHHHHHHHHHHHHHHHHCCCeEE-EEeCChhHhhHHHhhhhhhcCCCcccccCcccch
Q 006484 14 VKRLVVKVGTAVVTRSD--GRLALGRLGALLEQLKELNSQGFEII-LVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNEL 90 (643)
Q Consensus 14 ~~~iVIKlGGs~l~~~~--~~~~~~~l~~~a~~I~~l~~~g~~vv-lVhGGg~~i~~~~~~~~~~~~~~~~~l~~~~~~l 90 (643)
+|++|||+||+++++++ ..++.+.+++++++|+. |+++| ||||||+++.. +++ ..++++.|.+.+.
T Consensus 3 ~k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~----G~~vv~lVhGGG~~~~~-~~~-~~gi~~~~~~~d~----- 71 (249)
T 3ll5_A 3 FTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG----IEDLVCVVHGGGSFGHI-KAM-EFGLPGPKNPRSS----- 71 (249)
T ss_dssp -CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT----CTTEEEEEECCGGGTHH-HHH-HHTCSEECCHHHH-----
T ss_pred ceEEEEEECccEEecCcccccchHHHHHHHHHHHhc----CCceEEEEECccHHHHH-HHH-HhCCCcCCCcccc-----
Confidence 68999999999999864 25777889999999875 99999 99999887544 333 2345545532110
Q ss_pred hHHHHHHhc--hHHHHHHHHHHhccCCCCcceeEecccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccCCCCCC
Q 006484 91 DGKACAAVG--QSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYED 168 (643)
Q Consensus 91 ~~~~~~a~G--~~~~~~~~~~~l~~~g~~~~~~~~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~ 168 (643)
..+.... +..+...+...|...|+++.++. ..++...+.+ +.+.|+.+|++|+|||++| |.+...
T Consensus 72 --~gl~~t~~~~~~ln~~~v~~l~~~G~~a~~l~--~~~~~~~g~v--~~~~i~~ll~~g~ipVi~~-~~~~~~------ 138 (249)
T 3ll5_A 72 --IGYSIVHRDMENLDLMVIDAMIEMGMRPISVP--ISALRYDGRF--DYTPLIRYIDAGFVPVSYG-DVYIKD------ 138 (249)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHTTCCEEECC--GGGSCBSSSB--CCHHHHHHHHTTCEEEEEC-EEEEEE------
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHCCCcEEEEc--HHHcccccEE--cHHHHHHHHHCCCEEEECC-CEEEcC------
Confidence 1111110 12344455578888999877653 2233223334 5788999999999999985 555441
Q ss_pred CCce-eecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHH
Q 006484 169 SSGI-FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAA 246 (643)
Q Consensus 169 ~~~~-~~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa 246 (643)
++.. ++|+|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++++ +++.. +..+.+++|||.||+++|
T Consensus 139 ~~~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~-~~~~~----~~~~~~~tGgM~~Kl~aA 213 (249)
T 3ll5_A 139 EHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID-TNITF----DRVQNDVTGGIGKKFESM 213 (249)
T ss_dssp TTEEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEEC-CCC-----------------HHHHHHH
T ss_pred CCceeeecHHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHH-HHHhc----ccCCCeeECCHHHHHHHH
Confidence 2222 49999999999999999999999999999999995 99999999994 33322 222358899999999999
Q ss_pred HHH-HHcCCcEEEEeCCCcchHHHHHcCCce-eeEEe
Q 006484 247 YCA-ACAGIPVVITSGFAMDSIIKVLEGKRV-GTLFH 281 (643)
Q Consensus 247 ~~a-~~~gv~v~I~~g~~~~~l~~~~~g~~~-GT~i~ 281 (643)
..+ +++|++++|+||+.++.+.. +.|+.. ||+|.
T Consensus 214 ~~a~~~~Gv~v~I~~g~~~~~l~~-l~g~~~~GT~i~ 249 (249)
T 3ll5_A 214 VKMKSSVKNGVYLINGNHPERIGD-IGKESFIGTVIR 249 (249)
T ss_dssp HHHHTTCTTCEEEEETTSGGGGGG-TTSTTCCSEEEC
T ss_pred HHHHHhcCCEEEEEeCCChhHHHH-hCCCCCCCEEeC
Confidence 999 89999999999999999977 888888 99873
No 64
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=100.00 E-value=8.4e-34 Score=287.32 Aligned_cols=236 Identities=18% Similarity=0.268 Sum_probs=176.4
Q ss_pred hHhhhcccceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCc
Q 006484 7 SRAFVKDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKP 86 (643)
Q Consensus 7 ~~~~~~~~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~ 86 (643)
++....++|+||||+||++|++++..++.+.+..++++|++++++|+++|||||||. +.+.+.....+ ++..
T Consensus 43 ~~~~~~~~krIViKlGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG~-i~~g~~~~~~g-------l~~~ 114 (281)
T 3nwy_A 43 SAAQLSGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGN-FFRGAQLQQLG-------MERT 114 (281)
T ss_dssp ----CCCCSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTT-C---CCTTTTT-------CCHH
T ss_pred ccccCCcCcEEEEEEchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECChh-HhhhHHHHhcC-------CCcc
Confidence 444566789999999999999876678899999999999999999999999998765 44332111111 1111
Q ss_pred ccchhHHHHHHhchHHHHHHHHHHhccCCCCc-ceeEecccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccCCC
Q 006484 87 QNELDGKACAAVGQSSLMALYDTLFSQLDVTS-SQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAP 165 (643)
Q Consensus 87 ~~~l~~~~~~a~G~~~~~~~~~~~l~~~g~~~-~~~~~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~ 165 (643)
+... ..++.++++.. +|...|..+|+++ .|..++.+++.+ .+ .+.+.+ .+|++|+|||++| .
T Consensus 115 ~~d~-~g~lat~~n~~---~l~~~L~~~Gi~a~~~~~~~~~~~~~--~~-~~~~~l-~lL~~g~IpVv~g-----~---- 177 (281)
T 3nwy_A 115 RSDY-MGMLGTVMNSL---ALQDFLEKEGIVTRVQTAITMGQVAE--PY-LPLRAV-RHLEKGRVVIFGA-----G---- 177 (281)
T ss_dssp HHHH-HHHHHHHHHHH---HHHHHHHHTTCCEEEEESSCCGGGSE--EC-CHHHHH-HHHHTTCEEEEES-----T----
T ss_pred chhH-HHHHHHHHHHH---HHHHHHHHcCCCEEEEeccccccccc--cc-chHHHH-HHHHcCCeEEEEC-----C----
Confidence 1000 11333444322 6779999999987 455555555532 23 235556 7999999999986 1
Q ss_pred CCCCCceeecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCchHHHH
Q 006484 166 YEDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVN 244 (643)
Q Consensus 166 ~~~~~~~~~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~ 244 (643)
.|..|+|+|++|+++|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.+ .|+|.+|++
T Consensus 178 ---~g~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~A~~i~~is~~e~~~-----------~g~~v~k~~ 243 (281)
T 3nwy_A 178 ---MGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLD-----------RGLRVADAT 243 (281)
T ss_dssp ---TSSTTCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-----CCCCBCSEECHHHHHT-----------TTCCSSCHH
T ss_pred ---CCCCCCCHHHHHHHHHHHcCCCEEEEeeccCccccCCCCcCCCCeEcccccHHHHHH-----------cCCCcHHHH
Confidence 344569999999999999999999999999999999995 99999999999987642 257888999
Q ss_pred HHHHHHHcCCcEEEEeCCCcchHHHHHcCCceeeEEe
Q 006484 245 AAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFH 281 (643)
Q Consensus 245 aa~~a~~~gv~v~I~~g~~~~~l~~~~~g~~~GT~i~ 281 (643)
++..|.+.|++++|+||+.|+.|.++++|+..||+|.
T Consensus 244 Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 244 AFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp HHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred HHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 9999999999999999999999999999998999985
No 65
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=100.00 E-value=9.4e-33 Score=285.29 Aligned_cols=244 Identities=20% Similarity=0.280 Sum_probs=185.5
Q ss_pred ccceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCccc-ccCcc-cch
Q 006484 13 DVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ-NEL 90 (643)
Q Consensus 13 ~~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~-l~~~~-~~l 90 (643)
+++++|||+||+++++++ .+..++++|+.|++.|+++|||||||++++..+.. .++++.|.+ ++.+. ..+
T Consensus 25 ~~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~--~g~~~~~~~g~rvt~~~~l 96 (300)
T 2buf_A 25 VGKTLVIKYGGNAMESEE------LKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKR--LSIESHFIDGMRVTDAATM 96 (300)
T ss_dssp TTCEEEEEECCTTTTSSH------HHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHH--TTCCCCBSSSSBCBCHHHH
T ss_pred cCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHH--cCCCccccCCeecCCHHHH
Confidence 358999999999999753 57899999999999999999999999999876533 234433332 22221 122
Q ss_pred hHHHHHHhchHHHHHHHHHHhccCCCCcc-------eeEeccc----------------ccCcchh-hchHHHHHHHHHh
Q 006484 91 DGKACAAVGQSSLMALYDTLFSQLDVTSS-------QLLVTDS----------------DFRDEDF-RKQLYDTVQSLLD 146 (643)
Q Consensus 91 ~~~~~~a~G~~~~~~~~~~~l~~~g~~~~-------~~~~t~~----------------~~~~~~~-~~~~~~~i~~ll~ 146 (643)
....+.+.|+.. ..+...|..+|+++. +++.+.. |+...+. ...+.+.|+.+|+
T Consensus 97 ~~~~~~~~G~~~--~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~ 174 (300)
T 2buf_A 97 DVVEMVLGGQVN--KDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVK 174 (300)
T ss_dssp HHHHHHHHHTHH--HHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHhCCCCEEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEEECHHHHHHHHH
Confidence 222233467763 356788888887643 2322220 3332332 1245889999999
Q ss_pred CCCeeEecCCCceeccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCCCccceeeeecccchhH
Q 006484 147 LRVIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAE 225 (643)
Q Consensus 147 ~g~iPVv~g~d~v~~~~~~~~~~~~~~-~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~~p~a~~i~~i~~~e~~~~ 225 (643)
+|+|||+++ +.. +..|..+ +|+|++|+.+|.+|+||+|+|+|||||||+++ +++|++|+++|+.++
T Consensus 175 ~g~IpVi~~---v~~-----~~~G~~~~i~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~~-----a~~i~~i~~~e~~~~ 241 (300)
T 2buf_A 175 GDFIPVIAP---IGV-----GSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQ-----GQVLTGLSTEQVNEL 241 (300)
T ss_dssp TTCEEEEEE---EEE-----CTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCTT-----SCBCCEECHHHHHHH
T ss_pred CCCEEEEcC---cee-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeECCC-----CcChhhCCHHHHHHH
Confidence 999999972 221 1245566 69999999999999999999999999999872 799999999999887
Q ss_pred HhcCCCCCccCCCchHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHHcCCceeeEEecC
Q 006484 226 ITFGDKSRVGRGGMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (643)
Q Consensus 226 ~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~~g~~~GT~i~~~ 283 (643)
+..+ .++|||.||+++|..++++|++ ++|+||+.|+.+ .++++++..||+|.+.
T Consensus 242 ~~~~----~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 297 (300)
T 2buf_A 242 IADG----TIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR 297 (300)
T ss_dssp HHTT----CSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred HHcC----CCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeC
Confidence 6643 6799999999999999999999 999999999987 8889888899999875
No 66
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=100.00 E-value=4.9e-33 Score=288.76 Aligned_cols=252 Identities=19% Similarity=0.202 Sum_probs=179.9
Q ss_pred ccceEEEEeCCcccccCCCccC----HHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCccc
Q 006484 13 DVKRLVVKVGTAVVTRSDGRLA----LGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQN 88 (643)
Q Consensus 13 ~~~~iVIKlGGs~l~~~~~~~~----~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~~~ 88 (643)
|++++|||+||+++++ + ..+ .++++.++++|+.|++.|+++|||||||++++..+... +..++|. .+...
T Consensus 1 ~~k~iVIKlGGs~l~~-~-~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~l~~~--~~~~~~~-~~~~~- 74 (310)
T 2we5_A 1 MGKKMVVALGGNAILS-N-DASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQ--QAADSEK-NPAMP- 74 (310)
T ss_dssp -CCEEEEECCGGGGCC-S-SCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHH--HHTCSSS-SCCCC-
T ss_pred CCcEEEEEEChHHhcC-C-CCChHHHHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhHHHHHc--CCCCCCC-CCHHH-
Confidence 3579999999999987 2 233 27889999999999999999999999999999755332 2332331 11111
Q ss_pred chhHHHHHHhchHHH--HHHHHHHhccCCCC-------------------------cceeEecccc--------c---Cc
Q 006484 89 ELDGKACAAVGQSSL--MALYDTLFSQLDVT-------------------------SSQLLVTDSD--------F---RD 130 (643)
Q Consensus 89 ~l~~~~~~a~G~~~~--~~~~~~~l~~~g~~-------------------------~~~~~~t~~~--------~---~~ 130 (643)
+....+.+.|+.+. ...+...|...|++ .+++ ++..+ + .+
T Consensus 75 -l~~~~a~~~G~l~~~i~~al~~~l~~~g~~~~v~~~l~~~~v~~~d~~f~~~~~~vg~~-~t~~da~~l~~~~~~~~~~ 152 (310)
T 2we5_A 75 -LDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPADEAFKNPTKPIGPF-LTEAEAKEAMQAGAIFKED 152 (310)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCHHHHSCCEEEEEE-ECHHHHHHHHTTTCCEEEC
T ss_pred -HHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhHhhhhhhcccccchhhcccCceeEEe-ccHHHHHHHHhcccccccc
Confidence 11112233444322 12334556555543 1211 22111 2 01
Q ss_pred --chh----------hchHHHHHHHHHhCCCeeEecCCCceeccCCCCCCCCce-eecchhHHHHHHhhcCCCEEEEecc
Q 006484 131 --EDF----------RKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI-FWDNDSLAGLLALELKADLLVLLSD 197 (643)
Q Consensus 131 --~~~----------~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~~-~~~~D~~A~~lA~~L~Ad~li~lTd 197 (643)
+++ ..++.+.|+.||++|+|||++|++++...+ .+..|.. ++|+|++|+.+|.+|+||+|+|+||
T Consensus 153 ~~~~~~~vv~sp~~i~~v~~~~i~~lL~~g~IpIi~Gg~Gipv~~--~~~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTd 230 (310)
T 2we5_A 153 AGRGWRKVVPSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVG--QELKGVEAVIDKDFASEKLAELVDADALVILTG 230 (310)
T ss_dssp TTSCEEEEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEET--TTTEECCCCCCHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCcceeeccCCcccceeehHHHHHHHHHCCCEEEEECCCCCCCcC--CCCCCcEeecCHHHHHHHHHHHcCCCEEEEEeC
Confidence 111 115689999999999999999877765421 1112323 4999999999999999999999999
Q ss_pred CCccccCCCCCCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHHHHHHHcCC--cEEEEeCCCcchHHHHHcCCc
Q 006484 198 VEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGI--PVVITSGFAMDSIIKVLEGKR 275 (643)
Q Consensus 198 VdGVy~~~P~~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv--~v~I~~g~~~~~l~~~~~g~~ 275 (643)
|||||+ ||.+|++++|++|+++|+.+++..+ .+.+|||.||+++|..+++.|+ +++|++ ++.|.++++|+.
T Consensus 231 VdGVy~-dp~~~~a~~i~~i~~~e~~~~~~~g---~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~---~~~l~~~l~g~~ 303 (310)
T 2we5_A 231 VDYVCI-NYGKPDEKQLTNVTVAELEEYKQAG---HFAPGSMLPKIEAAIQFVESQPNKQAIITS---LENLGSMSGDEI 303 (310)
T ss_dssp CSSCEE-STTSTTCEECCEEEHHHHHHHHHTT---CSCTTTTHHHHHHHHHHHHHSTTCEEEEEC---SGGGGGCBTTBC
T ss_pred chHhhC-CCCCCCCeECCEEcHHHHHHHhhCC---CCCCCChHHHHHHHHHHHHcCCCceEEECc---HHHHHHHHcCCC
Confidence 999999 5778999999999999998876653 3667999999999999999999 699997 566888889988
Q ss_pred eeeEEe
Q 006484 276 VGTLFH 281 (643)
Q Consensus 276 ~GT~i~ 281 (643)
.||+|.
T Consensus 304 ~GT~i~ 309 (310)
T 2we5_A 304 VGTVVT 309 (310)
T ss_dssp CSEEEE
T ss_pred CCeEEe
Confidence 999985
No 67
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=100.00 E-value=5.3e-33 Score=285.27 Aligned_cols=242 Identities=21% Similarity=0.295 Sum_probs=184.0
Q ss_pred cceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCccc-ccCcc-cchh
Q 006484 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ-NELD 91 (643)
Q Consensus 14 ~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~-l~~~~-~~l~ 91 (643)
++++|||+||++++++ +.+..++++|+.|++.|+++|||||||++++..+.. .+..++|.+ ++.+. ..+.
T Consensus 21 ~~~iViKlGGs~l~~~------~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~--~~~~~~~~~g~r~t~~~~l~ 92 (282)
T 2bty_A 21 GKTFVIKFGGSAMKQE------NAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKD--LGIEPVFKNGHRVTDEKTME 92 (282)
T ss_dssp TCEEEEEECSHHHHSH------HHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHH--HTCCCCBSSSSBCBCHHHHH
T ss_pred CCeEEEEECchhhCCh------hHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHH--cCCCccccCCcccCCHHHHH
Confidence 6899999999999864 357899999999999999999999999999876533 233333322 22221 1122
Q ss_pred HHHHHHhchHHHHHHHHHHhccCCCCcc-------eeEeccc-----ccCcchhh-chHHHHHHHHHhCCCeeEecCCCc
Q 006484 92 GKACAAVGQSSLMALYDTLFSQLDVTSS-------QLLVTDS-----DFRDEDFR-KQLYDTVQSLLDLRVIPIFNENDA 158 (643)
Q Consensus 92 ~~~~~a~G~~~~~~~~~~~l~~~g~~~~-------~~~~t~~-----~~~~~~~~-~~~~~~i~~ll~~g~iPVv~g~d~ 158 (643)
...+.+.|+... .+...|..+|+++. +++.+.. |+...+.+ ..+.+.|+.+|++|.|||+++
T Consensus 93 ~~~~~~~G~~~~--~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~~~~i~~ll~~g~IpVi~~--- 167 (282)
T 2bty_A 93 IVEMVLVGKINK--EIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAP--- 167 (282)
T ss_dssp HHHHHHHHTHHH--HHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECTHHHHHHHHTTCEEEEES---
T ss_pred HHHHHHhhHHHH--HHHHHHHhCCCCceecChhhCCEEEEecCCcccCCCcceEEEEecHHHHHHHHHCCCEEEECC---
Confidence 112233676543 46788888887643 3333322 33332331 234789999999999999985
Q ss_pred eeccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCCCccceeeeecccchhHHhcCCCCCccCC
Q 006484 159 VSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRG 237 (643)
Q Consensus 159 v~~~~~~~~~~~~~~-~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~~p~a~~i~~i~~~e~~~~~~~g~~~~~~~g 237 (643)
+.. +..|..+ +|+|++|+.+|.+|+||+|+|+|||||||++ | ++|++|+++|+.++...| .++|
T Consensus 168 v~~-----~~~G~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~----~--~~i~~i~~~e~~~~~~~g----~~~g 232 (282)
T 2bty_A 168 VGI-----GEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD----G--KLISTLTPDEAEELIRDG----TVTG 232 (282)
T ss_dssp EEE-----CSSSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET----T--EECCEECHHHHHHHHTTT----CSCT
T ss_pred Ccc-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeecC----c--hhhhhCCHHHHHHHHHcC----CCCC
Confidence 111 1234456 7999999999999999999999999999997 3 899999999998876543 6799
Q ss_pred CchHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHHcCCceeeEEecC
Q 006484 238 GMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (643)
Q Consensus 238 gM~~Kl~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~~g~~~GT~i~~~ 283 (643)
||.||+++|..++++|++ ++|+||+.|+.| .++++++..||+|.++
T Consensus 233 GM~~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 280 (282)
T 2bty_A 233 GMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL 280 (282)
T ss_dssp THHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred cHHHHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeC
Confidence 999999999999999998 999999999998 8889998899999765
No 68
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=100.00 E-value=8.9e-33 Score=279.13 Aligned_cols=232 Identities=17% Similarity=0.257 Sum_probs=172.0
Q ss_pred hhcccceEEEEeCCcccccCCC-ccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCccc
Q 006484 10 FVKDVKRLVVKVGTAVVTRSDG-RLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQN 88 (643)
Q Consensus 10 ~~~~~~~iVIKlGGs~l~~~~~-~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~~~ 88 (643)
.|+++|++|||+||++++++++ .++.+++..++++|+.|+ .|+++|||||||+.+....+. ..++++.+.+
T Consensus 20 ~~~~~k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~-~g~~vVlVhGgG~~~~~~~~~-~~g~~~~~~~------ 91 (256)
T 2va1_A 20 HMMRKQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKIS-KKYIVSIVLGGGNIWRGSIAK-ELDMDRNLAD------ 91 (256)
T ss_dssp ---CCSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHT-TTSEEEEEECCTTTCCHHHHH-HTTCCHHHHH------
T ss_pred hhhhcCEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEECCcHHhccchHH-HcCCCCCchh------
Confidence 4667789999999999997642 577889999999999999 999999999998865543221 1222211111
Q ss_pred chhHHHHHHhchHHHHHHHHHHhccCCCCccee-EecccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccCCCCC
Q 006484 89 ELDGKACAAVGQSSLMALYDTLFSQLDVTSSQL-LVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYE 167 (643)
Q Consensus 89 ~l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~-~~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~ 167 (643)
..+++.+.++..++ ...|...|+++..+ .++..++.+. + .+.+. ..+|++|+|||++| .
T Consensus 92 --~~~~l~~~~n~~l~---~~~l~~~Gi~a~~~~~~t~~~~~~~--~-~~~~~-~~lL~~g~IpVi~~-----~------ 151 (256)
T 2va1_A 92 --NMGMMATIINGLAL---ENALNHLNVNTIVLSAIKCDKLVHE--S-SANNI-KKAIEKEQVMIFVA-----G------ 151 (256)
T ss_dssp --HHHHHHHHHHHHHH---HHHHHTTTCCEEEEESSCCTTTCEE--C-CHHHH-HHHHHTTCEEEEES-----T------
T ss_pred --HHHHHHHHHHHHHH---HHHHHHcCCCeEEEeeeecccccch--h-hHHHH-HHHHhCCcEEEEEC-----C------
Confidence 11344455554432 58888999887433 3444444332 2 23444 78999999999976 1
Q ss_pred CCCceeecchhHHHHHHhhcCCCEEEEecc-CCccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCchHHHHH
Q 006484 168 DSSGIFWDNDSLAGLLALELKADLLVLLSD-VEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNA 245 (643)
Q Consensus 168 ~~~~~~~~~D~~A~~lA~~L~Ad~li~lTd-VdGVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~a 245 (643)
.|..++++|++|+++|.+|+||+|+|+|| |||||++||+ +|++++|++|+++|+.++ + .|+| |+++
T Consensus 152 -~g~~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdGVy~~dP~~~p~a~~i~~is~~e~~~~---~------~~~m--k~~a 219 (256)
T 2va1_A 152 -TGFPYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQ---N------LKVM--DATA 219 (256)
T ss_dssp -TSSSSCCHHHHHHHHHHHHTCSEEEEEESSCCSBCSCC--------CBSEEEHHHHHHH---T------CCSS--CHHH
T ss_pred -CCCCCCChhHHHHHHHHhCCCCEEEEeecccCeEEcCCCCCCCCCEEccEEcHHHHHHh---c------cCCc--cHHH
Confidence 34457899999999999999999999999 9999999995 899999999999998764 1 3788 9999
Q ss_pred HHHHHHcCCcEEEEeCCCcchHHHHHcCCceeeEEe
Q 006484 246 AYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFH 281 (643)
Q Consensus 246 a~~a~~~gv~v~I~~g~~~~~l~~~~~g~~~GT~i~ 281 (643)
+..|.+.|++++|+|++.|+.+.++++|+..||+|.
T Consensus 220 a~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 220 LALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp HHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred HHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 999999999999999999999999999988999985
No 69
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=100.00 E-value=9.6e-33 Score=286.44 Aligned_cols=253 Identities=20% Similarity=0.254 Sum_probs=184.2
Q ss_pred ccceEEEEeCCcccccCCC----ccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCccc
Q 006484 13 DVKRLVVKVGTAVVTRSDG----RLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQN 88 (643)
Q Consensus 13 ~~~~iVIKlGGs~l~~~~~----~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~~~ 88 (643)
|++++|||+||++++++++ .++.+++++++++|+.|++.|+++|||||||++++..+.+... .+.+..++...
T Consensus 1 m~k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~--~~~~~~~~~~~- 77 (314)
T 1e19_A 1 MGKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDA--GQATYGIPAQP- 77 (314)
T ss_dssp -CCEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHH--HHHHHCCCCCC-
T ss_pred CCCEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccC--ccccCCCChhH-
Confidence 4589999999999996543 2455789999999999999999999999999999987755322 11120011111
Q ss_pred chhHHHHHHh--chH--HHHHHHHHHhccCCCCc------ceeEecccc--cCc--------------------c-----
Q 006484 89 ELDGKACAAV--GQS--SLMALYDTLFSQLDVTS------SQLLVTDSD--FRD--------------------E----- 131 (643)
Q Consensus 89 ~l~~~~~~a~--G~~--~~~~~~~~~l~~~g~~~------~~~~~t~~~--~~~--------------------~----- 131 (643)
+ ..+.++ |+. .+..+|...|.+.|+++ +|+.++..| |.. .
T Consensus 78 -l--~~~~a~~~G~i~~~l~~~l~~~l~~~gi~a~~~~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~ 154 (314)
T 1e19_A 78 -M--DVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVK 154 (314)
T ss_dssp -H--HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEE
T ss_pred -H--HHHHHHHhhHHHHHHHHHHHHHHHHcCCchhhhhhheeeeecccchhhccccccccceecHHHhhhhhhhcCcccc
Confidence 1 123333 332 34567788899999863 455444222 110 0
Q ss_pred -----h----------hhchHHHHHHHHHhCCCeeEecCCCceeccCCCCCCC---Cce-eecchhHHHHHHhhcCCCEE
Q 006484 132 -----D----------FRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDS---SGI-FWDNDSLAGLLALELKADLL 192 (643)
Q Consensus 132 -----~----------~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~---~~~-~~~~D~~A~~lA~~L~Ad~l 192 (643)
+ ...++.+.|+.||++|+|||++|+.++... .+++ +.. ++|+|++|+.+|.+|+||+|
T Consensus 155 g~~~~~~~~~v~s~~~i~~v~~~~i~~lL~~g~IpV~~Gg~giPi~---~~~d~~~g~~~~~d~D~~Aa~lA~~l~Ad~l 231 (314)
T 1e19_A 155 EDSGRGWRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVI---LEDGEIKGVEAVIDKDLAGEKLAEEVNADIF 231 (314)
T ss_dssp ECTTSCEEEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEE---EETTEEEECCCCCCHHHHHHHHHHHTTCSEE
T ss_pred ccccccccccccCcccceeehHHHHHHHHHCCCEEEEeCCCccCeE---ECCCCcceeEEeccHHHHHHHHHHHcCCCEE
Confidence 0 011368899999999999999875554321 1112 222 49999999999999999999
Q ss_pred EEeccCCccccCCCCCCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHHHHHHHc-CCcEEEEeCCCcchHHHHH
Q 006484 193 VLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACA-GIPVVITSGFAMDSIIKVL 271 (643)
Q Consensus 193 i~lTdVdGVy~~~P~~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~-gv~v~I~~g~~~~~l~~~~ 271 (643)
+|+|||||||++|| +|++++|++|+++|+.+++..+ .+.+|||.||+++|..+++. +++++|+|+ +.|.+++
T Consensus 232 i~lTdVdGvy~~~p-~~~a~~i~~i~~~e~~~~~~~g---~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~---~~l~~~~ 304 (314)
T 1e19_A 232 MILTDVNGAALYYG-TEKEQWLREVKVEELRKYYEEG---HFKAGSMGPKVLAAIRFIEWGGERAIIAHL---EKAVEAL 304 (314)
T ss_dssp EEEESSSSCEETTT-STTCEECCEEEHHHHHHHHHTT---CSCTTTHHHHHHHHHHHHHHTCSEEEEEEG---GGHHHHH
T ss_pred EEeccCCEEECCCC-CCCCeECCEECHHHHHHHHhCC---CcCCCChHHHHHHHHHHHHhCCCeEEEecH---HHHHHHH
Confidence 99999999999998 7999999999999998876543 47789999999999987765 567999984 5688888
Q ss_pred cCCceeeEEec
Q 006484 272 EGKRVGTLFHR 282 (643)
Q Consensus 272 ~g~~~GT~i~~ 282 (643)
+|. .||+|.+
T Consensus 305 ~g~-~GT~i~~ 314 (314)
T 1e19_A 305 EGK-TGTQVLP 314 (314)
T ss_dssp TTS-SSEEEEC
T ss_pred cCC-CCeEEcC
Confidence 874 7999863
No 70
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=100.00 E-value=1e-32 Score=279.41 Aligned_cols=244 Identities=18% Similarity=0.221 Sum_probs=183.2
Q ss_pred ceEEEEeCCcccccCC--CccCHHHHHHHHHHHHHHHHCC------CeEEEEeCChhHhhHHHhhhhhhcCCC----ccc
Q 006484 15 KRLVVKVGTAVVTRSD--GRLALGRLGALLEQLKELNSQG------FEIILVSSGAVGVGRQRLRYRKLVNSS----LAD 82 (643)
Q Consensus 15 ~~iVIKlGGs~l~~~~--~~~~~~~l~~~a~~I~~l~~~g------~~vvlVhGGg~~i~~~~~~~~~~~~~~----~~~ 82 (643)
+++|||+||+++++++ ..++.+.+++++++|+.+++.| .++|||||||+++.. +++. .++++. |..
T Consensus 7 m~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~i~~l~~~G~~~~~~~~vVlVhGGG~~~~~-~~~~-lgi~~~~~~~~~~ 84 (266)
T 3k4o_A 7 MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHP-VAKK-YLKIEDGKKIFIN 84 (266)
T ss_dssp CEEEEEECTTSSCCTTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHH-HHGG-GEEECSSSEEECC
T ss_pred eEEEEEEchHHeeCCCccCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEeCchHHHHH-HHHH-cCCCcccCccccc
Confidence 4799999999999864 3688899999999999999888 999999999997444 3332 344433 221
Q ss_pred ccCcccchhHHHHHHhchHHHHHHHHHHhccCCCCcceeEecccccCcchhhchHHHHHHHHHhCCCeeEecCCCceecc
Q 006484 83 LQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTR 162 (643)
Q Consensus 83 l~~~~~~l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~ 162 (643)
.+ +.+ ....++++ .+...+...|..+|+++.++...+..+...+ ...+.+.|+.+|++|+|||+++ |.+...
T Consensus 85 ~~---~G~-r~T~~a~~--~ln~~l~~~l~~~G~~a~~l~~~d~~~~~~g-~~v~~~~i~~lL~~g~ipVi~~-~~~~~~ 156 (266)
T 3k4o_A 85 ME---KGF-WEIQRAMR--RFNNIIIDTLQSYDIPAVSIQPSSFVVFGDK-LIFDTSAIKEMLKRNLVPVIHG-DIVIDD 156 (266)
T ss_dssp HH---HHH-HHHHHHHH--HHHHHHHHHHHTTTCCEEEECGGGTCEESSS-CBCCCHHHHHHHHTTCEEEEEC-EEEEES
T ss_pred cc---Cce-eHHHHHHH--HHHHHHHHHHHHCCCcEEEeeHHHcCcccCc-eEecHHHHHHHHHCCCEEEEeC-CEEEcC
Confidence 00 000 00112222 3455677899999999887643221111111 2234789999999999999985 555441
Q ss_pred CCCCCCCCce-eecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCCCccceeeeecccchhHHh--cCCCCCccCCCc
Q 006484 163 KAPYEDSSGI-FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEIT--FGDKSRVGRGGM 239 (643)
Q Consensus 163 ~~~~~~~~~~-~~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~~p~a~~i~~i~~~e~~~~~~--~g~~~~~~~ggM 239 (643)
++.. ++|+|++|+++|.+|+||+|+|+||||||| .|| +++++++.+|+.+++. .++.+.+++|||
T Consensus 157 ------~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~-----~~i~~~~~~e~~~l~~~~~~~~~~~~tGGM 224 (266)
T 3k4o_A 157 ------KNGYRIISGDDIVPYLANELKADLILYATDVDGVL-IDN-----KPIKRIDKNNIYKILNYLSGSNSIDVTGGM 224 (266)
T ss_dssp ------SSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSSB-SSS-----SBCSEECTTTHHHHHHHHHSTTCSCCSSHH
T ss_pred ------CCCeeeeCHHHHHHHHHHHcCCCEEEEEecCCeEE-eCC-----eecCcCCHHHHHHHHHHhccccCCcccCCH
Confidence 3333 499999999999999999999999999999 665 6999999888776543 345567899999
Q ss_pred hHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHcCCceeeEEecC
Q 006484 240 TAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (643)
Q Consensus 240 ~~Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~~g~~~GT~i~~~ 283 (643)
.+|+++|..+++ +++|+||+.|+.|.++++|+..||+|.+.
T Consensus 225 ~~Kv~aa~~a~~---~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 225 KYKIEMIRKNKC---RGFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp HHHHHHHHHTTC---EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred HHHHHHHHHHhc---CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 999999999988 99999999999999999999899999875
No 71
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=100.00 E-value=7.7e-33 Score=274.97 Aligned_cols=220 Identities=18% Similarity=0.177 Sum_probs=164.9
Q ss_pred ceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHH--hhhhhhcCCCcccccCcccchhH
Q 006484 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQR--LRYRKLVNSSLADLQKPQNELDG 92 (643)
Q Consensus 15 ~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~--~~~~~~~~~~~~~l~~~~~~l~~ 92 (643)
+++||||||++++++ +.+++++++++|+.+++.|+++|||||||+...... .+ ..+++. ..++. .
T Consensus 1 ~~iViK~GGs~l~~~----~~~~~~~~~~~i~~l~~~g~~vvlV~ggG~~~~~~~~~~~-~~g~~~--~~~~~------~ 67 (226)
T 2j4j_A 1 MNIILKISGKFFDED----NVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAR-EIGIGE--AYLDL------L 67 (226)
T ss_dssp CEEEEEECTHHHHTC----CHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHH-HTTCCH--HHHHH------H
T ss_pred CeEEEEeccccccCC----CHHHHHHHHHHHHHHHhCCCeEEEEECcchHhchhHHHHH-HhCCCc--ccHHH------H
Confidence 379999999999954 355789999999999999999999999988554421 11 111211 00111 1
Q ss_pred HHHHHhchHHHHHHHHHHhccCCCCcceeEecccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccCCCCCCCCce
Q 006484 93 KACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI 172 (643)
Q Consensus 93 ~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~~ 172 (643)
+++...++.. ++...|...|+.. +. .+.+.++.+|+.|.|||++| + ..
T Consensus 68 ~~~~~~~~~~---l~~~~l~~~g~~~--------~~-------~~~~~i~~ll~~g~ipVi~g-------g-------~~ 115 (226)
T 2j4j_A 68 GIWASRLNAY---LVMFSLQDLAYMH--------VP-------QSLEEFIQDWSHGKVVVTGG-------F-------QP 115 (226)
T ss_dssp HHHHHHHHHH---HHHHHHTTSBCSC--------CC-------SSHHHHHHHHTTSSBEEECC-------C-------ST
T ss_pred HHHHHHHHHH---HHHHHHHHhCCCC--------Cc-------CCHHHHHHHHHCCCEEEEcC-------C-------CC
Confidence 2333333333 3346788777632 11 12466899999999999975 1 12
Q ss_pred eecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCc--hHHHHHHHHH
Q 006484 173 FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGM--TAKVNAAYCA 249 (643)
Q Consensus 173 ~~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM--~~Kl~aa~~a 249 (643)
++|+|++|+++|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.+++..+ ...+||| .+|++++..+
T Consensus 116 ~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~---~~~~ggm~~~~k~~a~~~a 192 (226)
T 2j4j_A 116 GQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGS---QSVQAGTYELLDPLAIKIV 192 (226)
T ss_dssp TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC-------------CCSCHHHHHHH
T ss_pred CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHHHHhhcC---CCCcCCccccchHHHHHHH
Confidence 48999999999999999999999999999999995 8999999999999998765531 3678999 9999999999
Q ss_pred HHcCCcEEEEeCCCcchHHHHHcCCceeeEEec
Q 006484 250 ACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHR 282 (643)
Q Consensus 250 ~~~gv~v~I~~g~~~~~l~~~~~g~~~GT~i~~ 282 (643)
.++|++++|+|++.|+.+.++++|+..||+|.+
T Consensus 193 ~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~ 225 (226)
T 2j4j_A 193 ERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP 225 (226)
T ss_dssp HHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred HHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence 999999999999999999999999889999865
No 72
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=2.6e-32 Score=276.37 Aligned_cols=258 Identities=21% Similarity=0.276 Sum_probs=181.8
Q ss_pred hcccceEEEEeCCcccccCCC----ccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCc
Q 006484 11 VKDVKRLVVKVGTAVVTRSDG----RLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKP 86 (643)
Q Consensus 11 ~~~~~~iVIKlGGs~l~~~~~----~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~ 86 (643)
|.++|++||+|||++|..+.. ..+.++++..+++|+.+.+.|+++||+||+|||+|..+++..... .. ..
T Consensus 2 ~~~~~~ivvalgGnal~~~g~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGPQVG~i~~~~~~~~----~~--~~ 75 (317)
T 3kzf_A 2 MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAA----GV--SP 75 (317)
T ss_dssp -CCCCEEEEECCSTTTC--CCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHSTT----SS--SC
T ss_pred CCCCCEEEEEcChhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhcc----cc--CC
Confidence 556789999999999965322 235678899999999999999999999999999998765432111 01 23
Q ss_pred ccchhHHHHHHhchHHHH--HHHHHHhccCCCCc------ceeEecccc--cC---------------------------
Q 006484 87 QNELDGKACAAVGQSSLM--ALYDTLFSQLDVTS------SQLLVTDSD--FR--------------------------- 129 (643)
Q Consensus 87 ~~~l~~~~~~a~G~~~~~--~~~~~~l~~~g~~~------~~~~~t~~~--~~--------------------------- 129 (643)
.++|......+.|..+.+ ..+.+.|...|+.. .|+.+...| |.
T Consensus 76 ~~pld~~~A~sqG~igy~l~~al~~~l~~~g~~~~v~t~itq~~Vd~~Dpaf~~PtKpiG~~y~~~ea~~~~~~~~~~~~ 155 (317)
T 3kzf_A 76 EMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKIL 155 (317)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEECC--------------------
T ss_pred CCCccccCchhhHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEEECCCCccccCCCCCcCCCCCHHHHHHHHHhccCCeE
Confidence 345555556666666543 35667777776532 122221110 11
Q ss_pred ----cchhhc----------hHHHHHHHHHhCCCeeEecCCCceeccCCCCCCCCce-eecchhHHHHHHhhcCCCEEEE
Q 006484 130 ----DEDFRK----------QLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI-FWDNDSLAGLLALELKADLLVL 194 (643)
Q Consensus 130 ----~~~~~~----------~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~~-~~~~D~~A~~lA~~L~Ad~li~ 194 (643)
.+++++ ++.+.|+.||++|+|||+.|+.++....-.+...|.. ++|+|++|+.+|.+|+||+|+|
T Consensus 156 ~ed~grg~RrvV~sP~P~~iVe~~~I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIi 235 (317)
T 3kzf_A 156 REDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMI 235 (317)
T ss_dssp ------CCCCEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEE
T ss_pred eecCCCCeeeecCCCCCcceECHHHHHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEE
Confidence 012221 4579999999999997776544443211000001122 4999999999999999999999
Q ss_pred eccCCccccCCCCCCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHHHHHHHcCC-cEEEEeCCCcchHHHHHcC
Q 006484 195 LSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGI-PVVITSGFAMDSIIKVLEG 273 (643)
Q Consensus 195 lTdVdGVy~~~P~~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv-~v~I~~g~~~~~l~~~~~g 273 (643)
+|||||||+ ||++|++++|++|+.+|+.+++.. +.+.+|||.||+++|..++++|+ +++|+|+ +.+.++++|
T Consensus 236 LTDVdGVy~-dp~~p~a~~I~~it~~e~~~li~~---g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~---~~l~~~l~G 308 (317)
T 3kzf_A 236 LTDVLNACI-NYKKPDERKLEEIKLSEILALEKD---GHFAAGSMGPKVRAAIEFTQATGKMSIITSL---STAVDALNG 308 (317)
T ss_dssp CCSSSSCEE-SSSCSSCEECCEEEHHHHHHHHTT---TSCC--CCHHHHHHHHHHHHHHCCCEEECCG---GGHHHHHTT
T ss_pred ecCCCeeeC-CCCCCCCeECcCcCHHHHHHHHhc---CCCCCCCHHHHHHHHHHHHHcCCCeEEEcch---HHHHHHHCC
Confidence 999999999 787899999999999999987753 34778999999999999988655 5999994 567788888
Q ss_pred CceeeEEec
Q 006484 274 KRVGTLFHR 282 (643)
Q Consensus 274 ~~~GT~i~~ 282 (643)
+ .||+|.+
T Consensus 309 ~-~GT~I~~ 316 (317)
T 3kzf_A 309 K-CGTRIIK 316 (317)
T ss_dssp S-SSEEEEC
T ss_pred C-CCeEEec
Confidence 7 7999875
No 73
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=100.00 E-value=1.7e-32 Score=279.28 Aligned_cols=236 Identities=22% Similarity=0.211 Sum_probs=170.1
Q ss_pred eEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcC---CCcc-cc--cCcccc
Q 006484 16 RLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVN---SSLA-DL--QKPQNE 89 (643)
Q Consensus 16 ~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~---~~~~-~l--~~~~~~ 89 (643)
++|||+||++++ . ++.++++|+.|++.|+++|||||||++++..+.. .++. +.+. .+ +.+...
T Consensus 1 ~iViKlGGs~l~--~-------~~~~~~~i~~l~~~G~~vViVhGgg~~~~~~~~~--~~~~~~~~~~~~g~~~rvt~~~ 69 (269)
T 2egx_A 1 MIVVKVGGAEGI--N-------YEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEA--LGHPPRFLTHPGGQVSRLTDRK 69 (269)
T ss_dssp CEEEEECCSTTC--C-------HHHHHHHHHHHHHHTCCEEEECCCHHHHHHHHHH--TTCCCCC-------CCCCCCHH
T ss_pred CEEEEECHHHHH--H-------HHHHHHHHHHHHHCCCeEEEEECChHHHHHHHHH--cCCccccccccCCccCcCCCHH
Confidence 589999999997 2 7899999999999999999999999999765432 2233 1111 12 222111
Q ss_pred hhHHHHHHhchHHHHHHHHHHhccCCCCcceeEecccc----------------------cCcchh-hchHHHHHHHHHh
Q 006484 90 LDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSD----------------------FRDEDF-RKQLYDTVQSLLD 146 (643)
Q Consensus 90 l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~t~~~----------------------~~~~~~-~~~~~~~i~~ll~ 146 (643)
..+.+.++++..+...+...|..+|+++..+...+.. +...+. ...+.+.|+.+|+
T Consensus 70 -~l~~~~~~~~G~i~~~l~~~l~~~G~~a~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~D~g~~g~i~~v~~~~i~~ll~ 148 (269)
T 2egx_A 70 -TLEIFEMVYCGLVNKRLVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQ 148 (269)
T ss_dssp -HHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEETTGGGCEEECBC----------------CCEECCCEECHHHHHHHHH
T ss_pred -HHHHHHHHHHhHHHHHHHHHHHHCCCCeEEeCCCCccceeeeecccccccccccccCCcCCCCCCceEECHHHHHHHHH
Confidence 1234445544344567889999999876533211111 111111 1245889999999
Q ss_pred CCCeeEecCCCceeccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCCCccceeeeecccch--
Q 006484 147 LRVIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQ-- 223 (643)
Q Consensus 147 ~g~iPVv~g~d~v~~~~~~~~~~~~~~-~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~~p~a~~i~~i~~~e~~-- 223 (643)
+|.|||+++ .++. .+|..+ +|+|++|+++|.+|+||+|+|+|||||||+ || .|++++|++|+++|+.
T Consensus 149 ~g~ipVi~~-v~~~-------~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~-dp-~~~a~~i~~i~~~e~~~~ 218 (269)
T 2egx_A 149 AGYLPVLTP-PALS-------YENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLA-RY-PDEASLVREIPVERIEDP 218 (269)
T ss_dssp TTCEEEEEC-CEEE-------TTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSCBC--------CBCCEECHHHHHCH
T ss_pred CCCEEEEcC-cEEC-------CCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCchhhhc-CC-CCCccccccCCHHHhhHH
Confidence 999999973 1111 134444 999999999999999999999999999999 88 6889999999999988
Q ss_pred hHHhcCCCCCccCCCchHHHHHHHHHHHcCC-cEEEEeCCCcchHHHHHcCCceeeEEe
Q 006484 224 AEITFGDKSRVGRGGMTAKVNAAYCAACAGI-PVVITSGFAMDSIIKVLEGKRVGTLFH 281 (643)
Q Consensus 224 ~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv-~v~I~~g~~~~~l~~~~~g~~~GT~i~ 281 (643)
++ . .+++|||.||++++..++++|+ +++|+||+.|+.+...+.| .||+|.
T Consensus 219 ~l-~-----~~~~ggm~~Kl~aa~~a~~~gv~~v~I~~g~~~~~l~~~l~g--~GT~i~ 269 (269)
T 2egx_A 219 EY-L-----ALAQGRMKRKVMGAVEAVKGGVKRVVFADGRVENPIRRALSG--EGTVVR 269 (269)
T ss_dssp HH-H-----TTSCHHHHHHHHHHHHHHHTTCSCEEEEESSSSSHHHHHHTT--CSEEEC
T ss_pred Hh-c-----CCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCchHHHHHhCC--CCeEEC
Confidence 65 2 3789999999999999999999 7999999999999887777 799873
No 74
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=100.00 E-value=5.3e-32 Score=270.31 Aligned_cols=232 Identities=16% Similarity=0.246 Sum_probs=172.1
Q ss_pred ccceEEEEeCCcccccCC-CccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCcccchh
Q 006484 13 DVKRLVVKVGTAVVTRSD-GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELD 91 (643)
Q Consensus 13 ~~~~iVIKlGGs~l~~~~-~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~~~~l~ 91 (643)
++|++|||+|||+++++. +.++.+.+++++++|+.+++.|+++|||||||+.+.. +.....+. ++..+....
T Consensus 6 ~~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG~~~~g-~~~~~~G~------~~~~~~~~~ 78 (240)
T 4a7w_A 6 KNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRG-VSAAQGGI------IRRTSGDYM 78 (240)
T ss_dssp CCCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTC----------C------CCHHHHHHH
T ss_pred CCCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCcHHHhH-hHHHhcCC------CCCCCHHHH
Confidence 368999999999999743 3578889999999999999999999999999775432 21111110 111111000
Q ss_pred HHHHHHhchHHHHHHHHHHhccCCCCcceeEecccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccCCCCCCCCc
Q 006484 92 GKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSG 171 (643)
Q Consensus 92 ~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~ 171 (643)
.++++.++. .+++..|..+|+++ +.++..++.....+ .+.+.+..+|++|+|||++|+ .|.
T Consensus 79 -~~la~~~n~---~l~~~~l~~~G~~a--v~lt~~d~~~~~~~-~~~~~i~~lL~~g~ipVi~~~------------~g~ 139 (240)
T 4a7w_A 79 -GMLATVINA---VAMQEALEHIGLDT--RVQSAIEIKEICES-YIYRKAIRHLEKGRVVIFGAG------------TGN 139 (240)
T ss_dssp -HHHHHHHHH---HHHHHHHHHTTCCE--EEEESSCCTTTSEE-CCHHHHHHHHHTTCEEEEEST------------TSC
T ss_pred -HHHHHHHHH---HHHHHHHHHCCCCE--EEecHHHcCcccCc-CcHHHHHHHHHCCCEEEEeCC------------CCC
Confidence 123333332 24668899999987 34554444332222 236678899999999999751 233
Q ss_pred eeecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHHHHHH
Q 006484 172 IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAA 250 (643)
Q Consensus 172 ~~~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~ 250 (643)
.++|+|++|+++|.+|+||+|+|+|||||||++||+ +|++++|++++++|+.+. +.++| |++++..|.
T Consensus 140 ~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---------g~~~m--~~~a~~~a~ 208 (240)
T 4a7w_A 140 PFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIG---------DIEVM--DDTAISLAK 208 (240)
T ss_dssp TTSCHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEECHHHHHHS---------SCCSS--CHHHHHHHH
T ss_pred CCCChHHHHHHHHHHcCCCEEEEccCCCceECCCCCCCCCCeEcceecHHHHHhc---------Ccccc--HHHHHHHHH
Confidence 469999999999999999999999999999999996 999999999999887641 36788 678999999
Q ss_pred HcCCcEEEEeCCCcchHHHHHcC-CceeeEEe
Q 006484 251 CAGIPVVITSGFAMDSIIKVLEG-KRVGTLFH 281 (643)
Q Consensus 251 ~~gv~v~I~~g~~~~~l~~~~~g-~~~GT~i~ 281 (643)
++|++++|+||+.|+.|...+.| +..||.+.
T Consensus 209 ~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i~ 240 (240)
T 4a7w_A 209 DNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK 240 (240)
T ss_dssp HTTCCEEEEESSSTTHHHHHHHHSCSSCEEEC
T ss_pred HCCCeEEEECCCCccHHHHHHCCCCCCceeeC
Confidence 99999999999999999776654 46899873
No 75
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=100.00 E-value=2e-32 Score=278.58 Aligned_cols=231 Identities=16% Similarity=0.224 Sum_probs=178.2
Q ss_pred ceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCcccchhHHH
Q 006484 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKA 94 (643)
Q Consensus 15 ~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 94 (643)
+++|||+||+++++++ .+++..++++|+.+++. +++|||||||+ +++.+.... ...+ + ....+..++
T Consensus 37 ~~iVIKlGGs~l~~~~----~~~~~~la~~I~~l~~~-~~vVlVhGGg~-~~~~~~~~~--~~~g---~--~~~~~~~~~ 103 (270)
T 2ogx_B 37 DATVIKIGGQSVIDRG----RAAVYPLVDEIVAARKN-HKLLIGTGAGT-RARHLYSIA--AGLG---L--PAGVLAQLG 103 (270)
T ss_dssp TEEEEEECTTTTGGGC----HHHHHHHHHHHHHHTTT-CEEEEEECCCH-HHHHHHHHH--HHTT---C--CHHHHHHHH
T ss_pred CeEEEEechHHhCCCC----HHHHHHHHHHHHHHhcC-CcEEEEECChH-HHHHHHHHH--HhcC---C--ChHHHHHHH
Confidence 4999999999999753 46789999999999876 99999999999 565543211 1111 1 112345668
Q ss_pred HHHhchHHHHHHHHHHhccCCCCcceeEecccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccCCCCCCCCc-ee
Q 006484 95 CAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSG-IF 173 (643)
Q Consensus 95 ~~a~G~~~~~~~~~~~l~~~g~~~~~~~~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~-~~ 173 (643)
++++|+..++ ++..|..+|++ .++..++ +.++.+|++|.|||++|++++...+.. ...+. .+
T Consensus 104 ~~a~G~~~l~--~~~~l~~~G~~----~vt~~d~----------~~i~~lL~~g~ipVi~g~~g~~~~~~~-~~~g~~~~ 166 (270)
T 2ogx_B 104 SSVADQNAAM--LGQLLAKHGIP----VVGGAGL----------SAVPLSLAEVNAVVFSGMPPYKLWMRP-AAEGVIPP 166 (270)
T ss_dssp HHHHHHHHHH--HHHHHGGGTCC----BCCSSTT----------CHHHHHCTTCCEEEEECSCTTGGGCCC-CSSSSSCS
T ss_pred HHHHHHHHHH--HHHHHHhcCCc----eecHhhH----------HHHHHHHhCCCEEEEeCCccccccccc-cccccCCC
Confidence 8999998875 36778778875 3443343 248999999999999997665532100 00122 34
Q ss_pred ecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHHHHHHHc
Q 006484 174 WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACA 252 (643)
Q Consensus 174 ~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~ 252 (643)
+|+|++|+++|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.++...+ ....|||.+|+++|. .
T Consensus 167 ~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~g---~~~~ggm~~kl~aa~----~ 239 (270)
T 2ogx_B 167 YRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHD---SILEFPVLDLLQSAQ----H 239 (270)
T ss_dssp SCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHHTTCCC---TTSCHHHHHHHHHCS----S
T ss_pred CCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHHHhcCC---CcccHHHHHHHHHhh----c
Confidence 9999999999999999999999999999999995 9999999999999988765433 134489999999874 4
Q ss_pred CCcEEEEeCCCcchHHHHHcCCceeeEEec
Q 006484 253 GIPVVITSGFAMDSIIKVLEGKRVGTLFHR 282 (643)
Q Consensus 253 gv~v~I~~g~~~~~l~~~~~g~~~GT~i~~ 282 (643)
+++++|+||+.|+.|.++++|+..||+|.+
T Consensus 240 ~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 240 VREVQVVNGLVPGNLTRALAGEHVGTIITA 269 (270)
T ss_dssp CCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred CCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence 579999999999999999999889999875
No 76
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=100.00 E-value=1.6e-31 Score=267.83 Aligned_cols=231 Identities=16% Similarity=0.222 Sum_probs=171.5
Q ss_pred ccceEEEEeCCcccccCCC-ccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCcccchh
Q 006484 13 DVKRLVVKVGTAVVTRSDG-RLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELD 91 (643)
Q Consensus 13 ~~~~iVIKlGGs~l~~~~~-~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~~~~l~ 91 (643)
+++++|||+|||+++++++ .++.+++..++++|+.+++.|+++|||||||+......+.. .++..... +
T Consensus 6 ~~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~GgG~~~~g~~~~~-~~~~~~~~--~------- 75 (239)
T 1ybd_A 6 KYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQA-GSMDRATA--D------- 75 (239)
T ss_dssp SCSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHH-TTSCHHHH--H-------
T ss_pred CCCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhchhHHH-cCCCCccH--H-------
Confidence 4689999999999997632 56788899999999999999999999999977543321111 11211100 0
Q ss_pred HHHHHHhchHHHHHHHHHHhccCCCCcceeE-ecccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccCCCCCCCC
Q 006484 92 GKACAAVGQSSLMALYDTLFSQLDVTSSQLL-VTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS 170 (643)
Q Consensus 92 ~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~-~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~ 170 (643)
.+.++|......++...|...|+++..+. .+..++.+ .+ .+.+.+ .+|+.|.|||++|+ .|
T Consensus 76 --~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~~~~--~~-~~~~~~-~ll~~g~ipVv~g~------------~g 137 (239)
T 1ybd_A 76 --YMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAE--TY-ARPKAI-QYLEEGKVVIFAAG------------TG 137 (239)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSCE--EC-CHHHHH-HHHHTTCEEEEEST------------TS
T ss_pred --HHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeccccccc--ch-hHHHHH-HHHhCCcEEEEECC------------cc
Confidence 11222222222234588888898764332 22222221 12 234556 88999999999752 23
Q ss_pred ceeecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHHHHH
Q 006484 171 GIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCA 249 (643)
Q Consensus 171 ~~~~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a 249 (643)
..++|+|++|+++|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.++ + .++| |++++..|
T Consensus 138 ~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g------~~~m--~~~a~~~a 206 (239)
T 1ybd_A 138 NPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---N------LKVM--DATAFALC 206 (239)
T ss_dssp STTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHT---T------CCSS--CHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHHh---c------cccc--CHHHHHHH
Confidence 3469999999999999999999999999999999995 999999999999988752 2 4678 67799999
Q ss_pred HHcCCcEEEEeCCCcchHHHHHcCCceeeEEec
Q 006484 250 ACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHR 282 (643)
Q Consensus 250 ~~~gv~v~I~~g~~~~~l~~~~~g~~~GT~i~~ 282 (643)
.++|++++|+|++.|+.+.++++|+..||+|.+
T Consensus 207 ~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~~ 239 (239)
T 1ybd_A 207 RERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC 239 (239)
T ss_dssp HHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred HHcCCcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence 999999999999999999999999889999863
No 77
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=99.98 E-value=1.8e-31 Score=269.24 Aligned_cols=232 Identities=16% Similarity=0.211 Sum_probs=175.1
Q ss_pred ccceEEEEeCCcccccCC-CccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCcccchh
Q 006484 13 DVKRLVVKVGTAVVTRSD-GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELD 91 (643)
Q Consensus 13 ~~~~iVIKlGGs~l~~~~-~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~~~~l~ 91 (643)
+++++|||||||++++++ ..++.+++..++++|+.+++.|+++|||||||+.+....+.. .++...+.+ .
T Consensus 6 ~~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~~~~-lg~~~~~~~----~---- 76 (252)
T 1z9d_A 6 KYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAAD-AGMDRVQAD----Y---- 76 (252)
T ss_dssp SCSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHH-HTCCHHHHH----H----
T ss_pred CCCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccchHHH-cCCCCCchH----H----
Confidence 358999999999999743 257788999999999999999999999999977443321111 122211111 0
Q ss_pred HHHHHHhchHHHHHHHHHHhccCCCCcceeEe-cccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccCCCCCCCC
Q 006484 92 GKACAAVGQSSLMALYDTLFSQLDVTSSQLLV-TDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS 170 (643)
Q Consensus 92 ~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~-t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~ 170 (643)
..++...++.. ++...|...|+++..+.. +..++.+ .+. +.+. ..+|+.|+|||++|. .|
T Consensus 77 ~~~~~~~~~~~---ll~~al~~~G~~~~~~~~~~~~~~~~--~~~-~~~~-~~lL~~g~IpVi~~~------------~g 137 (252)
T 1z9d_A 77 TGMLGTVMNAL---VMADSLQHYGVDTRVQTAIPMQNVAE--PYI-RGRA-LRHLEKNRIVVFGAG------------IG 137 (252)
T ss_dssp HHHHHHHHHHH---HHHHHHHTTTCCEEEEESSCBTTTBE--ECC-HHHH-HHHHHTTCEEEEEST------------TS
T ss_pred HHHHHHHHHHH---HHHHHHHHcCCCeEEEeccccccccC--cch-HHHH-HHHHhCCCEEEEeCC------------cC
Confidence 02333333333 345888888987644322 2222322 122 3444 899999999999861 23
Q ss_pred ceeecchhHHHHHHhhcCCCEEEEec-cCCccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHHHH
Q 006484 171 GIFWDNDSLAGLLALELKADLLVLLS-DVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYC 248 (643)
Q Consensus 171 ~~~~~~D~~A~~lA~~L~Ad~li~lT-dVdGVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~ 248 (643)
..++|+|++|+.+|.+|+||+|+|+| ||||||++||+ +|++++|++|+++|+.+ .+.++| |++++..
T Consensus 138 ~~~~~~D~~Aa~lA~~l~Ad~LiilT~DVdGvy~~dP~~~~~a~~i~~i~~~e~~~---------~~~~~m--k~~aa~~ 206 (252)
T 1z9d_A 138 SPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIK---------RGLKIM--DATASTL 206 (252)
T ss_dssp CTTCCHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHHT---------TTCCCS--CHHHHHH
T ss_pred CCCCChHHHHHHHHHhcCCCEEEEecCCCCeeeCCCCCCCCCCeEeeEecHHHHHh---------cccccc--CHHHHHH
Confidence 34699999999999999999999999 99999999995 99999999999988764 125788 8899999
Q ss_pred HHHcCCcEEEEeCCCcchHHHHHcCCceeeEEecC
Q 006484 249 AACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (643)
Q Consensus 249 a~~~gv~v~I~~g~~~~~l~~~~~g~~~GT~i~~~ 283 (643)
|.+.|++++|+|++.|+.|.++++|+..||+|.+.
T Consensus 207 a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 241 (252)
T 1z9d_A 207 SMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNK 241 (252)
T ss_dssp HHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred HHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecC
Confidence 99999999999999999999999998899999876
No 78
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=99.98 E-value=1.1e-31 Score=268.21 Aligned_cols=231 Identities=19% Similarity=0.231 Sum_probs=170.3
Q ss_pred ccceEEEEeCCcccccCCC-ccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHh-hHHHhhhhhhcCCCcccccCcccch
Q 006484 13 DVKRLVVKVGTAVVTRSDG-RLALGRLGALLEQLKELNSQGFEIILVSSGAVGV-GRQRLRYRKLVNSSLADLQKPQNEL 90 (643)
Q Consensus 13 ~~~~iVIKlGGs~l~~~~~-~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i-~~~~~~~~~~~~~~~~~l~~~~~~l 90 (643)
+++++|||+|||+++++++ .++.+.+++++++|+.+++.|+++|||||||... +..+ ...+++..+.
T Consensus 8 ~~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~~~--~~~g~~~~~~--------- 76 (243)
T 3ek6_A 8 SYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGL--AASGMDRVTG--------- 76 (243)
T ss_dssp SCSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCSTTT--SCSSSCHHHH---------
T ss_pred cCcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH--HHcCCCCCCH---------
Confidence 4689999999999998653 6888999999999999999999999999986621 2211 1111110000
Q ss_pred hHHHHHHhchHHHHHHHHHHhccCCCCcceeEecccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccCCCCCCCC
Q 006484 91 DGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS 170 (643)
Q Consensus 91 ~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~ 170 (643)
....+.+. ... ..++..+|...|+++..+. ..+..... ...+.+.+..+|++|+|||++| . .|
T Consensus 77 d~~g~l~t-~~N-~~~l~~al~~~G~~a~~~~--~~~~~~v~-~~~~~~~~~~lL~~g~IpVv~~-----~-------~g 139 (243)
T 3ek6_A 77 DHMGMLAT-VIN-ALAMQDALEKLGAKVRVMS--AIKINDVC-EDFIRRRAIRHLEKGRIAIFAA-----G-------TG 139 (243)
T ss_dssp HHHHHHHH-HHH-HHHHHHHHHHTTCCEEEEE--SSCBTTTB-EECCHHHHHHHHHTTCEEEEES-----T-------TS
T ss_pred HHHHHHHH-HHH-HHHHHHHHHHcCCCeEEec--hhhcCccc-CcCCHHHHHHHHHCCcEEEEEC-----C-------CC
Confidence 00111111 111 1135678888887654221 11110000 0012467889999999999976 1 33
Q ss_pred ceeecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHHHHH
Q 006484 171 GIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCA 249 (643)
Q Consensus 171 ~~~~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a 249 (643)
..++|+|++|+++|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.+ .+ .++| |++++..|
T Consensus 140 ~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~---~g------~~~~--~~~a~~~a 208 (243)
T 3ek6_A 140 NPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIM---QG------LEVM--DTAAFALA 208 (243)
T ss_dssp STTCCHHHHHHHHHHHHTCSEEEEECSSSSCBSSCGGGCTTCCBCSEECHHHHHH---HT------CCSS--CHHHHHHH
T ss_pred CCcCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceecccccHHHHHh---CC------chhH--HHHHHHHH
Confidence 4569999999999999999999999999999999996 99999999999988764 12 3445 78999999
Q ss_pred HHcCCcEEEEeCCCcchHHHHHcCCceeeEEec
Q 006484 250 ACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHR 282 (643)
Q Consensus 250 ~~~gv~v~I~~g~~~~~l~~~~~g~~~GT~i~~ 282 (643)
.++|++++|+|++.|+.|.++++|+..||+|.+
T Consensus 209 ~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 209 RDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp HHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred HHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 999999999999999999999999989999875
No 79
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=99.98 E-value=1.5e-31 Score=269.18 Aligned_cols=233 Identities=19% Similarity=0.239 Sum_probs=168.5
Q ss_pred ccceEEEEeCCcccccCC-CccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCcccchh
Q 006484 13 DVKRLVVKVGTAVVTRSD-GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELD 91 (643)
Q Consensus 13 ~~~~iVIKlGGs~l~~~~-~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~~~~l~ 91 (643)
+++++|||||||++++++ ..++.+++..++++|+.+++.|+++|||||||+......+.. .+++..+. +
T Consensus 7 ~~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~~~~-~g~~~~~~--d------- 76 (247)
T 2a1f_A 7 IYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAK-AGMNRVVG--D------- 76 (247)
T ss_dssp SCSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHH-TTCCHHHH--H-------
T ss_pred cccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchhHHH-cCCCCCcH--H-------
Confidence 368999999999999743 257788999999999999999999999999977543321111 11211110 0
Q ss_pred HHHHHHhchHHHHHHHHHHhccCCCCcceeEe-cccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccCCCCCCCC
Q 006484 92 GKACAAVGQSSLMALYDTLFSQLDVTSSQLLV-TDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS 170 (643)
Q Consensus 92 ~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~-t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~ 170 (643)
.+.+++......++...|...|+++..+.. +..++.+ .+. +.+ +..+|+.|.|||++|+ .|
T Consensus 77 --~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~~~~~--~~~-~~~-~~~ll~~g~ipVi~~~------------~g 138 (247)
T 2a1f_A 77 --HMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICD--TYN-WSE-AIKMLREKRVVIFSAG------------TG 138 (247)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTTTSE--ECC-HHH-HHHHHHTTCEEEEEST------------TS
T ss_pred --HHHHHHHHHHHHHHHHHHHHcCCCeEEecccccccccc--hhh-HHH-HHHHHhCCCEEEEeCC------------cC
Confidence 112232222222356888889987644322 2222221 122 234 4799999999999761 23
Q ss_pred ceeecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHHHHH
Q 006484 171 GIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCA 249 (643)
Q Consensus 171 ~~~~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a 249 (643)
..++|+|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.++ +.++| |++++..|
T Consensus 139 ~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~dP~~~p~a~~i~~i~~~e~~~~---------g~~~m--~~~aa~~a 207 (247)
T 2a1f_A 139 NPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDK---------ELKVM--DLSAFTLA 207 (247)
T ss_dssp CSSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEECHHHHHHT---------TCCSS--CHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhCCCCEEEEEeCCCcccCCCCCCCCCCeEcccCCHHHHHHc---------Ccccc--CHHHHHHH
Confidence 3469999999999999999999999999999999995 899999999999988752 24778 67799999
Q ss_pred HHcCCcEEEEeCCCcchHHHHHcCCceeeEEecCc
Q 006484 250 ACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRDA 284 (643)
Q Consensus 250 ~~~gv~v~I~~g~~~~~l~~~~~g~~~GT~i~~~~ 284 (643)
.+.|++++|+|++.|+.+.++++|+..||+|....
T Consensus 208 ~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~~~ 242 (247)
T 2a1f_A 208 RDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEGH 242 (247)
T ss_dssp HHHTCCEEEEETTSTTHHHHHHTCSCSSEEECCC-
T ss_pred HHcCCcEEEEeCCCchHHHHHHcCCCCceEEeecc
Confidence 99999999999999999999999999999998863
No 80
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=99.98 E-value=2.6e-32 Score=273.79 Aligned_cols=228 Identities=18% Similarity=0.236 Sum_probs=163.6
Q ss_pred hhcccceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCcccc
Q 006484 10 FVKDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNE 89 (643)
Q Consensus 10 ~~~~~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~~~~ 89 (643)
.+++.|++||||||+++++++ ++.+++..++++|+.+++ |+++|||||||+.+... ....... .++...+.
T Consensus 15 ~~~~~k~iViKlGGs~l~~~~--~~~~~i~~~~~~i~~l~~-g~~vViV~GgG~~~~~~-~~~~~~~-----gl~~~~~~ 85 (244)
T 2brx_A 15 PRGSHMRIVFDIGGSVLVPEN--PDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKY-IEVAEKF-----NSSETFKD 85 (244)
T ss_dssp ----CCEEEEEECHHHHCSSS--CCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHH-HHHHHTT-----TCCHHHHH
T ss_pred hhhcccEEEEEechhhcCCCC--CCHHHHHHHHHHHHHHhC-CCeEEEEECccHHHhch-HHHHHHc-----CCCcccHH
Confidence 455678999999999999764 677889999999999999 99999999998865542 1111111 11111111
Q ss_pred hhHHHHHHhchHHHHHHHHHHhccCCCCcceeEecccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccCCCCCCC
Q 006484 90 LDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDS 169 (643)
Q Consensus 90 l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~ 169 (643)
. .+++...++..+ +...|...|++. ++ .+.+.+..+|+.|+|||++|
T Consensus 86 ~-~~~~~~~~~~~l---~~~~l~~~g~~~--------~~-------~~~~~i~~lL~~g~IpVi~g-------------- 132 (244)
T 2brx_A 86 F-IGIQITRANAML---LIAALREKAYPV--------VV-------EDFWEAWKAVQLKKIPVMGG-------------- 132 (244)
T ss_dssp H-HHHHHHHHHHHH---HHHHHGGGBCSS--------CB-------CSHHHHHHHHHTTCBCEECC--------------
T ss_pred H-HHHHHHHHHHHH---HHHHHHHcCCCC--------Cc-------CCHHHHHHHHhCCCEEEEcC--------------
Confidence 0 123333333333 346787777532 11 12456889999999999975
Q ss_pred CceeecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHHHH
Q 006484 170 SGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYC 248 (643)
Q Consensus 170 ~~~~~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~ 248 (643)
|..++|+|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.+++..+ ...+|||.+|..+|..
T Consensus 133 g~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~---g~~~g~m~~~~~~A~~ 209 (244)
T 2brx_A 133 THPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKG---IEKAGSSSVIDPLAAK 209 (244)
T ss_dssp CSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC-----------CCSCHHHHH
T ss_pred CCCCCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhcc---CCCCCCCcchHHHHHH
Confidence 12347899999999999999999999999999999995 8999999999999998776541 2558898887777766
Q ss_pred HH-HcCCcEEEEeCCCcchHHHHHcCCceeeEEec
Q 006484 249 AA-CAGIPVVITSGFAMDSIIKVLEGKRVGTLFHR 282 (643)
Q Consensus 249 a~-~~gv~v~I~~g~~~~~l~~~~~g~~~GT~i~~ 282 (643)
++ +.|++++|+||+.|+.|.++++|+..||+|.+
T Consensus 210 ~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 244 (244)
T 2brx_A 210 IIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP 244 (244)
T ss_dssp HHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred HHHHCCCeEEEEeCCChhHHHHHHcCCCCceEecC
Confidence 55 46788999999999999999999889999863
No 81
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=99.97 E-value=1.8e-31 Score=270.49 Aligned_cols=240 Identities=25% Similarity=0.294 Sum_probs=173.9
Q ss_pred cceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCC-eEEEEeCChhHhhHHHhhhhhhcCCCcc-cccCcccc-h
Q 006484 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGF-EIILVSSGAVGVGRQRLRYRKLVNSSLA-DLQKPQNE-L 90 (643)
Q Consensus 14 ~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~-~vvlVhGGg~~i~~~~~~~~~~~~~~~~-~l~~~~~~-l 90 (643)
|+++||||||++++++ +.+++++++|+.+++.|. ++|||||||+++++.+. . .+..+.+. .++.+..+ +
T Consensus 2 m~~~ViK~GGs~l~~~------~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~-~-~g~~~~~~~glr~t~~~~l 73 (258)
T 1gs5_A 2 MNPLIIKLGGVLLDSE------EALERLFSALVNYRESHQRPLVIVHGGGCVVDELMK-G-LNLPVKKKNGLRVTPADQI 73 (258)
T ss_dssp CCCEEEEECGGGGGCH------HHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHH-H-HTCCCCEETTEECBCHHHH
T ss_pred CccEEEEEChhHhCCh------HHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHH-H-cCCCcceeCCEeeCCHHHH
Confidence 4689999999999874 358999999999987765 58999999998877543 2 22332222 23222211 1
Q ss_pred hHHHHHHhchHHHHHHHHHHhccCCCCcceeEeccccc----------Ccchh-hchHHHHHHHHHhCCCeeEecCCCce
Q 006484 91 DGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDF----------RDEDF-RKQLYDTVQSLLDLRVIPIFNENDAV 159 (643)
Q Consensus 91 ~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~t~~~~----------~~~~~-~~~~~~~i~~ll~~g~iPVv~g~d~v 159 (643)
........|... ..+...|...|+++.++...+.++ ...+. +.++.+.|+.+|++|.|||++|++ +
T Consensus 74 ~~~~~~l~~~~n--~~l~~~l~~~G~~a~~l~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~i~~ll~~g~ipVi~~~g-~ 150 (258)
T 1gs5_A 74 DIITGALAGTAN--KTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIG-V 150 (258)
T ss_dssp HHHHHHHHTHHH--HHHHHHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEE-E
T ss_pred HHHHHHHhccch--HHHHHHHHHCCCCeEEEeecCCCEEEEEEcCCCCCCcCceeEECHHHHHHHHHCCCEEEEeCCc-C
Confidence 000011223222 122345678888776654333221 11111 234568899999999999999852 2
Q ss_pred eccCCCCCCCCce-eecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCCCccceeeeecccchhHHhcCCCCCccCCC
Q 006484 160 STRKAPYEDSSGI-FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGG 238 (643)
Q Consensus 160 ~~~~~~~~~~~~~-~~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~~p~a~~i~~i~~~e~~~~~~~g~~~~~~~gg 238 (643)
. ..|.. ++|+|++|+.+|.+|+|| |+|+|||||||++| +++|++|+++|+.+++..+ .++||
T Consensus 151 ~-------~~g~~~~~~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d-----~~~i~~i~~~e~~~l~~~~----~~~gG 213 (258)
T 1gs5_A 151 T-------DEGQLMNVNADQAATALAATLGAD-LILLSDVSGILDGK-----GQRIAEMTAAKAEQLIEQG----IITDG 213 (258)
T ss_dssp C-------TTSCEEECCHHHHHHHHHHHHTCE-EEEEESSSSCBCTT-----SCBCCEECHHHHHHHHHTT----CSCTH
T ss_pred C-------CCCcEEEecHHHHHHHHHHHhCCc-EEEEeCCCceECCC-----CCCCcccCHHHHHHHHhcC----CCCCc
Confidence 2 14444 499999999999999999 99999999999975 6899999999999876643 77999
Q ss_pred chHHHHHHHHHHH-cCCcEEEEeCCCcchHHHHHcCCceeeEEe
Q 006484 239 MTAKVNAAYCAAC-AGIPVVITSGFAMDSIIKVLEGKRVGTLFH 281 (643)
Q Consensus 239 M~~Kl~aa~~a~~-~gv~v~I~~g~~~~~l~~~~~g~~~GT~i~ 281 (643)
|.+|+++|..+++ .|++++|+|++.|+.|.++++|+..||+|.
T Consensus 214 m~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 214 MIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence 9999999999876 588899999999999999999988999985
No 82
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=99.97 E-value=1.5e-30 Score=285.58 Aligned_cols=238 Identities=18% Similarity=0.207 Sum_probs=175.6
Q ss_pred cceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCccc-ccCcc-cchh
Q 006484 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ-NELD 91 (643)
Q Consensus 14 ~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~-l~~~~-~~l~ 91 (643)
++++|||+||+++++++ +..++++|+.|++.|+++|||||||++++..+.. .+..+++.+ ++.+. ..+.
T Consensus 43 ~~~iViK~GG~~l~~~~-------~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~--~~~~~~~~~g~r~t~~~~l~ 113 (456)
T 3d2m_A 43 GTTLVAGIDGRLLEGGT-------LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAA--QGRTPHYCRGLRVTDETSLG 113 (456)
T ss_dssp TCEEEEEECGGGGTSTH-------HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTT--TTCCCCCGGGCCCBCHHHHH
T ss_pred CCEEEEEEChHHhcCch-------HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHH--CCCCCEeeCCeecCCHHHHH
Confidence 57999999999998753 7899999999999999999999999998875432 334433322 22221 1121
Q ss_pred HHHHHHhchHHHHHHHHHHhccCCCCc-----------ceeEeccc-------ccCcchh-hchHHHHHHHHHhCCCeeE
Q 006484 92 GKACAAVGQSSLMALYDTLFSQLDVTS-----------SQLLVTDS-------DFRDEDF-RKQLYDTVQSLLDLRVIPI 152 (643)
Q Consensus 92 ~~~~~a~G~~~~~~~~~~~l~~~g~~~-----------~~~~~t~~-------~~~~~~~-~~~~~~~i~~ll~~g~iPV 152 (643)
....++|+...+ +...|. .|+++ .+++.... |+...+. ...+.+.|+.+|++|+|||
T Consensus 114 -~~~~~~G~~~~~--l~~~l~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~ipI 189 (456)
T 3d2m_A 114 -QAQQFAGTVRSR--FEAALC-GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGNIVW 189 (456)
T ss_dssp -HHHHHHHHHHHH--HHHHHH-TC--------CCCEECCSCEEEEECCEETTEECBTBEEEEEECHHHHHHHHHTTCEEE
T ss_pred -HHHHHHhHHHHH--HHHHHh-cccccCCCccceeeccCcEEEEEEcccccCcccCceeeEEEECHHHHHHHHHCCCeEE
Confidence 122233776653 456666 66554 22222110 2222222 1245799999999999999
Q ss_pred ecCCCceeccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCCCccceeeeecccchhHHhcCCC
Q 006484 153 FNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDK 231 (643)
Q Consensus 153 v~g~d~v~~~~~~~~~~~~~~-~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~~p~a~~i~~i~~~e~~~~~~~g~~ 231 (643)
+++++. . ..+..+ +|+|++|+.+|.+|+||+|+|+|||||||++ ++++|++|+++|+.+++..|
T Consensus 190 i~~~~~--~------~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~-----~~~~i~~i~~~e~~~~~~~g-- 254 (456)
T 3d2m_A 190 MPPLGH--S------YGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRP-----DGTLAETLSAQEAQSLAEHA-- 254 (456)
T ss_dssp ECSEEE--C------TTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCBCT-----TSCBCSEEEHHHHHHHHTTC--
T ss_pred ECCccc--C------CCCCEEEECHHHHHHHHHHHcCCCEEEEEECCccccCC-----CCCccccCCHHHHHHHHhcc--
Confidence 986321 1 134444 9999999999999999999999999999987 37999999999998776543
Q ss_pred CCccCCCchHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHHcCCceeeEEecC
Q 006484 232 SRVGRGGMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (643)
Q Consensus 232 ~~~~~ggM~~Kl~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~~g~~~GT~i~~~ 283 (643)
+|||.||+++|..+++.|++ ++|+||+.|+.+ .++++++..||++.+.
T Consensus 255 ----~ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~ 304 (456)
T 3d2m_A 255 ----ASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKE 304 (456)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECC
T ss_pred ----CCChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeecc
Confidence 49999999999999999997 999999999998 7788888899999875
No 83
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.97 E-value=7.9e-31 Score=267.32 Aligned_cols=225 Identities=17% Similarity=0.193 Sum_probs=168.7
Q ss_pred eEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCcccchhHHHH
Q 006484 16 RLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKAC 95 (643)
Q Consensus 16 ~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 95 (643)
++|||+||| +++++ .+.+..++++|+.++ .|+++|||||||++. +.+++.. .+. .++. .++
T Consensus 41 ~iVIKiGGs-l~~~~----~~~l~~l~~~I~~l~-~G~~vVlV~GGg~~~-~~~~~~~--~~~---gl~~-------~~l 101 (276)
T 2ogx_A 41 LQVVKIGGR-VMDRG----ADAILPLVEELRKLL-PEHRLLILTGAGVRA-RHVFSVG--LDL---GLPV-------GSL 101 (276)
T ss_dssp EEEEEECHH-HHTTT----HHHHHHHHHHHHHHT-TTCEEEEEECCTHHH-HHHHHHH--HHT---TCCH-------HHH
T ss_pred eEEEEEChh-hcCCC----HHHHHHHHHHHHHHh-CCCeEEEEECcHHHH-HHHHhcc--CcC---CCCH-------HHH
Confidence 999999999 88643 457899999999998 899999999998754 4444321 111 1211 122
Q ss_pred HHhchHH---HHHHHHHHhccCCCCcceeEecccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccCCCCCCCCc-
Q 006484 96 AAVGQSS---LMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSG- 171 (643)
Q Consensus 96 ~a~G~~~---~~~~~~~~l~~~g~~~~~~~~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~- 171 (643)
..+++.. -..+++.++...|++.. .+.++.+.|+.+|++|+|||++||+++...+. +.+.
T Consensus 102 ~~v~~~~~~~n~~l~~~ll~~~g~~~v-------------~~~~~~~~i~~lL~~g~IpVi~~~~~~~~~e~---~G~~~ 165 (276)
T 2ogx_A 102 APLAASEAGQNGHILAAMLASEGVSYV-------------EHPTVADQLAIHLSATRAVVGSAFPPYHHHEF---PGSRI 165 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCBC-------------CHHHHHHHHHHHHHHSSEEEEESSCTTGGGCC---SSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcc-------------cccChHHHHHHHHhCCCEEEEcCCcccccccc---cCCcC
Confidence 2332221 11133445545555321 12235788999999999999999876653110 0122
Q ss_pred eeecchhHHHHHHhhcCCCEEEEeccCCccccCCCC---CCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHHHH
Q 006484 172 IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS---EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYC 248 (643)
Q Consensus 172 ~~~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~---~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~ 248 (643)
.++|+|++|+++|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.++. ++|||.||+.++..
T Consensus 166 ~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~~~--------g~ggM~~K~~~~~~ 237 (276)
T 2ogx_A 166 PPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSE--------GPLPVDRALLDVMA 237 (276)
T ss_dssp CSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHTSC--------SCCSSCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHHHh--------CcCChHHHHHHHHH
Confidence 359999999999999999999999999999999994 7899999999999877543 48999999988887
Q ss_pred HHHcCCcEEEEeCCCcchHHHHHcCCceeeEEecC
Q 006484 249 AACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (643)
Q Consensus 249 a~~~gv~v~I~~g~~~~~l~~~~~g~~~GT~i~~~ 283 (643)
+.+.|++++|+||+.|+.|.+.++|+..||+|.+.
T Consensus 238 ~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 272 (276)
T 2ogx_A 238 TARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG 272 (276)
T ss_dssp TCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred HhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence 77778899999999999998889998899999765
No 84
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=99.97 E-value=2.1e-30 Score=261.75 Aligned_cols=236 Identities=16% Similarity=0.187 Sum_probs=172.9
Q ss_pred hhcccceEEEEeCCcccccCC-CccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCccc
Q 006484 10 FVKDVKRLVVKVGTAVVTRSD-GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQN 88 (643)
Q Consensus 10 ~~~~~~~iVIKlGGs~l~~~~-~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~~~ 88 (643)
-|+.++++||||||++++++. +.++.+++++++++|+.+++.|+++|||||||+.+....+.. .+++.. ..+
T Consensus 8 ~~~~~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~GgG~~~~~~~~~~-~g~~~~--~~~---- 80 (255)
T 2jjx_A 8 HMRPYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEE-WGIDRV--EAD---- 80 (255)
T ss_dssp --CBCSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHH-TTCCHH--HHH----
T ss_pred ccccCCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECchHHHhhhHHHH-cCCCCC--ChH----
Confidence 477889999999999999752 357888999999999999999999999999988653322211 122110 000
Q ss_pred chhHHHHHHhchHHHHHHHHHHhcc-CCCCcceeEecccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccCCCCC
Q 006484 89 ELDGKACAAVGQSSLMALYDTLFSQ-LDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYE 167 (643)
Q Consensus 89 ~l~~~~~~a~G~~~~~~~~~~~l~~-~g~~~~~~~~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~ 167 (643)
..+++.+.++.. ++...|.. .|+++.. ++..++.......+....+ .+|+.|.|||++| .
T Consensus 81 --~~~~~~~~~~~~---ll~~~l~~~~Gi~a~~--l~~~~~~~v~~~~~~~~~~-~lL~~g~IpVi~g-----g------ 141 (255)
T 2jjx_A 81 --NIGTLGTIINSL---MLRGVLTSKTNKEVRV--MTSIPFNAVAEPYIRLRAV-HHLDNGYIVIFGG-----G------ 141 (255)
T ss_dssp --HHHHHHHHHHHH---HHHHHHHHHCSSCEEE--EESSCCCSSSEECCHHHHH-HHHHTTCEEEEES-----T------
T ss_pred --HHhHHHHHHHHH---HHHHHHHhhcCCceEE--ecHHHcCcccCcccHHHHH-HHHhCCcEEEEeC-----C------
Confidence 012344444433 24578888 9988653 2222221110012334444 8999999999975 1
Q ss_pred CCCceeecchhHHHHHHhhcCCCEEEEec-cCCccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCchHHHHH
Q 006484 168 DSSGIFWDNDSLAGLLALELKADLLVLLS-DVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNA 245 (643)
Q Consensus 168 ~~~~~~~~~D~~A~~lA~~L~Ad~li~lT-dVdGVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~a 245 (643)
.|..++++|++|+.+|.+|+||+|+|+| ||||||++||+ +|++++|++|+++|+.++ ++|+|.+ .+
T Consensus 142 -~g~~~vttD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~---------G~~~m~~--~a 209 (255)
T 2jjx_A 142 -NGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---------NIQVMDQ--AA 209 (255)
T ss_dssp -TSCSSCCSHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT---------TCCSSCH--HH
T ss_pred -CCCCccchHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHHHHc---------CCccCHH--HH
Confidence 1223488899999999999999999999 99999999995 899999999999877642 3688975 45
Q ss_pred HHHHHHcCCcEEEEeCCCcchHHHHHcCCceeeEEecC
Q 006484 246 AYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (643)
Q Consensus 246 a~~a~~~gv~v~I~~g~~~~~l~~~~~g~~~GT~i~~~ 283 (643)
+..+.+.|++++|+|++.|+.+.+.++|+..||+|.++
T Consensus 210 ~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~ 247 (255)
T 2jjx_A 210 LLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 247 (255)
T ss_dssp HHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred HHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecC
Confidence 56666799999999999999999899998899999874
No 85
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=99.97 E-value=3.5e-31 Score=271.12 Aligned_cols=236 Identities=17% Similarity=0.194 Sum_probs=173.8
Q ss_pred cceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCccc-ccCcc---cc
Q 006484 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ---NE 89 (643)
Q Consensus 14 ~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~-l~~~~---~~ 89 (643)
.+++|||+||++++++ +++++++|+.|+..|.++|||||||+++++.+.. .++++.|.+ ++.+. +.
T Consensus 48 ~~~iViK~GGsv~~~~--------~~~~~~dI~~l~~~G~~~VvVHGgG~~i~~~l~~--~gi~~~~~~G~RvTd~~~l~ 117 (307)
T 3zzh_A 48 QQFAVIKVGGAIISDN--------LHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEA--QGIEPDYIDGIRITDEHTMA 117 (307)
T ss_dssp SCCEEEEECHHHHHHS--------HHHHHHHHHHHHHBTCCEEEEECCHHHHHHHHHH--TTCCCCEETTEECBCHHHHH
T ss_pred CCEEEEEEChHHhhch--------HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH--cCCCccccCCeecCCHHHHH
Confidence 3789999999988763 6899999999999999999999999999886533 455666644 33332 22
Q ss_pred hhHHHHHHhchHHHHHHHHHHhccCCCCcceeE---eccc-----ccCcchh-hchHHHHHHHHHhCCCeeEecCCCcee
Q 006484 90 LDGKACAAVGQSSLMALYDTLFSQLDVTSSQLL---VTDS-----DFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVS 160 (643)
Q Consensus 90 l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~---~t~~-----~~~~~~~-~~~~~~~i~~ll~~g~iPVv~g~d~v~ 160 (643)
+.++ ++|+.. ..+...|...|+++..+. ++.. |+...+. ..++.+.|+.+|++|+|||+++ +++.
T Consensus 118 vv~m---~~~~vn--~~lv~~L~~~G~~Av~l~gg~~~a~~~~~~d~g~~G~i~~v~~~~i~~lL~~g~IpVi~~-~g~~ 191 (307)
T 3zzh_A 118 VVRK---CFLEQN--LKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTS-LAET 191 (307)
T ss_dssp HHHH---HHHHHH--HHHHHHHHHTTCCEEEECSSSEEEEESCHHHHBSBEEEEEECCHHHHHHHHHTCEEEECC-CEEC
T ss_pred HHHH---HHHHHH--HHHHHHHHhCCCCeeEEcCCcEEEEecCccccCccccccccCHHHHHHHHHCCCEEEEeC-CeEC
Confidence 2222 234322 233466777787765431 1211 2222222 2256789999999999999986 3332
Q ss_pred ccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCCCccceeeeeccc-chhHHhcCCCCCccCCC
Q 006484 161 TRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAK-HQAEITFGDKSRVGRGG 238 (643)
Q Consensus 161 ~~~~~~~~~~~~~-~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~~p~a~~i~~i~~~e-~~~~~~~g~~~~~~~gg 238 (643)
. .|..+ +|+|++|+++|.+|+||+|+|+|||||||++ |++++|++++++| +.+++.. ..++||
T Consensus 192 ~-------~G~~~~i~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~----~~~~~i~~i~~~e~~~~l~~~----~~~tGG 256 (307)
T 3zzh_A 192 A-------SGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING----STGEKISMINLDEEYDDLMKQ----SWVKYG 256 (307)
T ss_dssp T-------TCBEEBCCHHHHHHHHHHHHCCSEEEEECSSCSCEET----TTTEECCEEEHHHHHHHHHTS----TTSCHH
T ss_pred C-------CCcEEecCHHHHHHHHHHhCCCCEEEEEeCCcceecC----CCCcCCcccCHHHHHHHHHhC----CCCCCc
Confidence 2 34455 9999999999999999999999999999986 3589999999976 5556553 377999
Q ss_pred chHHHHHHHHHHH---cCCcEEEEeCCCcchH-HHHHcCCceeeEEecC
Q 006484 239 MTAKVNAAYCAAC---AGIPVVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (643)
Q Consensus 239 M~~Kl~aa~~a~~---~gv~v~I~~g~~~~~l-~~~~~g~~~GT~i~~~ 283 (643)
|.||++++..|.+ .|.+++|++ ++.+ .++++++..||.|.+.
T Consensus 257 M~~Kl~aa~~a~~~v~~g~~v~I~~---~~~ll~elft~~g~GT~I~~~ 302 (307)
T 3zzh_A 257 TKLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (307)
T ss_dssp HHHHHHHHHHHHHHSCTTCCEEEEC---GGGHHHHHHSCCCCSEEEECC
T ss_pred HHHHHHHHHHHHHHhccCeEEEEeC---ccHHHHHHhcCCCCcEEEecC
Confidence 9999997555544 487899998 7776 7889999999999876
No 86
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=99.97 E-value=1.6e-30 Score=257.09 Aligned_cols=215 Identities=15% Similarity=0.160 Sum_probs=156.5
Q ss_pred ceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHH--HhhhhhhcCCCcccccCcccchhH
Q 006484 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQ--RLRYRKLVNSSLADLQKPQNELDG 92 (643)
Q Consensus 15 ~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~--~~~~~~~~~~~~~~l~~~~~~l~~ 92 (643)
+++|||||||+++++ .+++++++++|+.+++ |+++|||||||+++... +.+. .+... ..++. .
T Consensus 1 ~~iViK~GGs~l~~~-----~~~~~~~~~~i~~l~~-g~~vvlV~ggG~~~~~~~~~~~~-~g~~~--~~l~~------~ 65 (219)
T 2ij9_A 1 MKVVLSLGGSVLSNE-----SEKIREFAKTIESVAQ-QNQVFVVVGGGKLAREYIKSARE-LGASE--TFCDY------I 65 (219)
T ss_dssp CEEEEEECSSTTTTC-----HHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHH-TTCCH--HHHHH------H
T ss_pred CeEEEEeChhhhCCh-----HHHHHHHHHHHHHHcC-CCEEEEEECcchHhcchHHHHHH-cCCCc--cchHH------H
Confidence 479999999999873 3468999999999999 99999999998877663 2221 12110 01111 1
Q ss_pred HHHHHhchHHHHHHHHHHhccCCCCcceeEecccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccCCCCCCCCce
Q 006484 93 KACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI 172 (643)
Q Consensus 93 ~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~~ 172 (643)
+++...++..+ +..+|... + .| + ..+.+.++.+|++|.|||++| |..
T Consensus 66 ~~~~~~~~~~l---~~~~~~~~-~--~~------~-------~~~~~~i~~ll~~g~ipVi~~--------------g~~ 112 (219)
T 2ij9_A 66 GIAATRLNAML---LISAIPSA-A--KK------V-------PVDFMEAEELSKLYRVVVMGG--------------TFP 112 (219)
T ss_dssp HHHHHHHHHHH---HHHHCTTB-C--SS------C-------CSSHHHHHHHHTTCSEEEECC--------------CSS
T ss_pred HHHHHHHHHHH---HHHHHHHh-c--CC------C-------cCCHHHHHHHHHCCCEEEEeC--------------CCC
Confidence 23333333333 33555332 1 11 1 123567999999999999975 123
Q ss_pred eecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHHHH-HH
Q 006484 173 FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYC-AA 250 (643)
Q Consensus 173 ~~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~-a~ 250 (643)
++|+|++|+++|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.+++..+ ...+|||.+|..+|.. +.
T Consensus 113 ~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~---g~~~g~~~~~~~~a~~~~~ 189 (219)
T 2ij9_A 113 GHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRS---SAKAGTNVVIDLLAAKIIE 189 (219)
T ss_dssp SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC--------CCCCCSCHHHHHHHH
T ss_pred CCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHHHHHhcC---CCCCCCccchHHHHHHHHH
Confidence 57999999999999999999999999999999996 9999999999999988765431 1457887666666655 55
Q ss_pred HcCCcEEEEeCCCcchHHHHHcCCceeeEEe
Q 006484 251 CAGIPVVITSGFAMDSIIKVLEGKRVGTLFH 281 (643)
Q Consensus 251 ~~gv~v~I~~g~~~~~l~~~~~g~~~GT~i~ 281 (643)
+.|++++|+|| .|+.|.++++|+..||+|.
T Consensus 190 ~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~ 219 (219)
T 2ij9_A 190 RSKIKTYVILG-TPENIMKAVKGEAVGTVIA 219 (219)
T ss_dssp HHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred HCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence 57889999999 9999998999988999873
No 87
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=99.96 E-value=5.1e-30 Score=276.21 Aligned_cols=241 Identities=17% Similarity=0.118 Sum_probs=177.5
Q ss_pred cceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCccc-ccCcccchhH
Q 006484 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQNELDG 92 (643)
Q Consensus 14 ~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~-l~~~~~~l~~ 92 (643)
++++|||+||++++++ +++++++|+.|++.|.++|||||||+++++.+.+ .++++.|.+ ++.+...-..
T Consensus 58 ~~~iViK~GGsv~~~~--------l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~~--~gi~~~f~~G~RvTd~~~l~ 127 (460)
T 3s6g_A 58 ERFAVIKVGGAVIQDD--------LPGLASALAFLQTVGLTPVVVHGGGPQLDAALEA--ADIPTERVDGLRVTRDEAMP 127 (460)
T ss_dssp GGSEEEEECHHHHHHC--------HHHHHHHHHHHHHHTCCCEEEECCHHHHHHHHHH--HSCCCCCCSSSCCBCTTTHH
T ss_pred CCEEEEEEChHHhhhH--------HHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHH--cCCCccccCCccCCCHHHHH
Confidence 3799999999987753 6899999999999999999999999999886533 355655543 3333211111
Q ss_pred HHHHHhchHHHHHHHHHHhccCCCCcceeE---e-----cccccCcchh-hchHHHHHHHHHhCCCeeEecCCCceeccC
Q 006484 93 KACAAVGQSSLMALYDTLFSQLDVTSSQLL---V-----TDSDFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVSTRK 163 (643)
Q Consensus 93 ~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~---~-----t~~~~~~~~~-~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~ 163 (643)
....++|+... .+..+|...|+++..+. + +..++...+. ..++.+.|+.+|++|.|||+++++
T Consensus 128 vv~~~lg~vn~--~lv~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~p~g------ 199 (460)
T 3s6g_A 128 IIRDTLTQANL--ALVDAIRDAGGRAAAVPRGVFEADIVDADKLGRVGEPRHIHLDLVGSAARAGQAAILACLG------ 199 (460)
T ss_dssp HHHHHHHHHHH--HHHHHHHHTTCCEEEECSSSEEEEESCTTTTBSEEEEEEECCHHHHHHHHTTCEEEEECEE------
T ss_pred HHHHHHHHHHH--HHHHHHHhCCCCceEEecCeEEEEEecCcccCccCcceEEcHHHHHHHHHCCcEEEEECce------
Confidence 12233454332 23346777777654431 1 1123322222 225678999999999999997521
Q ss_pred CCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCCCccceeeeecc-cchhHHhcCCCCCccCCCchH
Q 006484 164 APYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRA-KHQAEITFGDKSRVGRGGMTA 241 (643)
Q Consensus 164 ~~~~~~~~~~-~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~~p~a~~i~~i~~~-e~~~~~~~g~~~~~~~ggM~~ 241 (643)
.+..|..+ +|+|++|+++|.+|+||+|+|+|||||||+++ +++|++|+.+ |+.+++.. ..++|||.|
T Consensus 200 --~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~~-----~~lI~~i~~~~e~~~l~~~----~~~tGGM~~ 268 (460)
T 3s6g_A 200 --ETPDGTLVNINADVAVRALVHALQPYKVVFLTGTGGLLDED-----GDILSSINLATDFGDLMQA----DWVNGGMRL 268 (460)
T ss_dssp --ECTTCCEEEECHHHHHHHHHHHHCCSEEEEECSSCSCBCTT-----SSBCCEEEHHHHHHHHHHC----SSSCHHHHH
T ss_pred --ECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCCccccCCC-----CeecceeCcHHHHHHHHhc----CCCCCcHHH
Confidence 11244444 99999999999999999999999999999863 7899999986 77766654 378999999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCcchH-HHHHcCCceeeEEecC
Q 006484 242 KVNAAYCAACAGIPVVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (643)
Q Consensus 242 Kl~aa~~a~~~gv~v~I~~g~~~~~l-~~~~~g~~~GT~i~~~ 283 (643)
|+++|..+++.+.+++|++++.|+.| .++++++..||+|.+.
T Consensus 269 Kl~aa~~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 311 (460)
T 3s6g_A 269 KLEEIKRLLDDLPLSSSVSITRPSELARELFTHAGSGTLIRRG 311 (460)
T ss_dssp HHHHHHHHHHTSCTTCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred HHHHHHHHHhCCCcEEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence 99999999884335999999999998 6789999999999886
No 88
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=99.96 E-value=8.4e-30 Score=273.70 Aligned_cols=236 Identities=17% Similarity=0.193 Sum_probs=173.3
Q ss_pred cceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCccc-ccCcc---cc
Q 006484 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ---NE 89 (643)
Q Consensus 14 ~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~-l~~~~---~~ 89 (643)
++++|||+||++++++ +++++++|+.|+..|.++|||||||+++++.+.. .++++.|.+ ++.+. +.
T Consensus 48 ~~~iVIK~GGsv~~~~--------l~~la~dI~~l~~~G~~~VvVHGgG~~i~~~l~~--~gi~~~f~~G~RvTd~~tl~ 117 (464)
T 4ab7_A 48 QQFAVIKVGGAIISDN--------LHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEA--QGIEPDYIDGIRITDEHTMA 117 (464)
T ss_dssp -CCEEEEECHHHHHHC--------HHHHHHHHHHHHHTTCCCEEEECCCHHHHHHHHH--TTCCCCEETTEECBCHHHHH
T ss_pred CceEEEEECHHHhhch--------HHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHH--cCCCccccCCeecCCHHHHH
Confidence 3789999999998753 6899999999999999999999999999886533 456666654 43332 22
Q ss_pred hhHHHHHHhchHHHHHHHHHHhccCCCCcceeE---eccc-----ccCcchh-hchHHHHHHHHHhCCCeeEecCCCcee
Q 006484 90 LDGKACAAVGQSSLMALYDTLFSQLDVTSSQLL---VTDS-----DFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVS 160 (643)
Q Consensus 90 l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~---~t~~-----~~~~~~~-~~~~~~~i~~ll~~g~iPVv~g~d~v~ 160 (643)
+.+++ +|+.. ..+...|...|+++..+. ++.. |+...|. ..++.+.|+.+|++|+|||+++ +++.
T Consensus 118 vv~mv---~~~vn--~~lv~~L~~~G~~Avglsgg~~~a~~~~~~d~g~vG~I~~v~~~~I~~lL~~G~IPVi~~-~g~~ 191 (464)
T 4ab7_A 118 VVRKC---FLEQN--LKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTS-LAET 191 (464)
T ss_dssp HHHHH---HHHHH--HHHHHHHHHTTCCEEEECSSSEEEEESCTTTTBSBEEEEEECCHHHHHHHHTTCEEEEES-EEEC
T ss_pred HHHHH---HHHHH--HHHHHHHHhCCCCeEEECCCcEEEEecCccccCCcCcccccCHHHHHHHHHCCcEEEEcC-CcCC
Confidence 22222 34322 234467777887765431 1211 2222222 2256789999999999999986 2222
Q ss_pred ccCCCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCCCccceeeeeccc-chhHHhcCCCCCccCCC
Q 006484 161 TRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAK-HQAEITFGDKSRVGRGG 238 (643)
Q Consensus 161 ~~~~~~~~~~~~~-~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~~p~a~~i~~i~~~e-~~~~~~~g~~~~~~~gg 238 (643)
..|..+ +|+|++|+++|.+|+||+|+|+|||||||++ |++++|++|+.+| +.+++.. ..++||
T Consensus 192 -------~~G~~~ni~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~----~~~~lI~~it~~e~~~~li~~----~~~tgG 256 (464)
T 4ab7_A 192 -------ASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING----STGEKISMINLDEEYDDLMKQ----SWVKYG 256 (464)
T ss_dssp -------TTCBEEECCHHHHHHHHHHHHCCSEEEEEESSCSEECT----TTCCEECEEEHHHHHHHHHTC----SSCCHH
T ss_pred -------CCCCEEEecHHHHHHHHHHHcCCCEEEEEecccccccC----CCCcCCcccCHHHHHHHHHhc----CCCCCc
Confidence 244455 9999999999999999999999999999987 3589999999976 5555553 378999
Q ss_pred chHHHHHHHHHHH---cCCcEEEEeCCCcchH-HHHHcCCceeeEEecC
Q 006484 239 MTAKVNAAYCAAC---AGIPVVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (643)
Q Consensus 239 M~~Kl~aa~~a~~---~gv~v~I~~g~~~~~l-~~~~~g~~~GT~i~~~ 283 (643)
|.||++++..|.+ .|.+++|++ ++.+ .++++++..||.|.+.
T Consensus 257 M~pKl~aa~aa~~~v~~g~~v~I~~---~~~ll~eLft~~g~GT~I~~~ 302 (464)
T 4ab7_A 257 TKLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (464)
T ss_dssp HHHHHHHHHHHHTTSCTTCEEEEEE---STTHHHHTTSSSTTSEEEECC
T ss_pred HHHHHHHHHHHHHhcccCcEEEEec---ChHHHHHHhcCCCCceEEecC
Confidence 9999997666655 377799998 5665 7788899999999886
No 89
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=99.96 E-value=2.2e-29 Score=272.29 Aligned_cols=232 Identities=20% Similarity=0.235 Sum_probs=166.8
Q ss_pred cceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCcccchhHH
Q 006484 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGK 93 (643)
Q Consensus 14 ~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 93 (643)
|+++|+||||+++.+. +++++++++|+.+++.|+++||||||++..++.+++.......++ . .-..+
T Consensus 1 m~~iViK~GGssl~~~------~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~~~~~-~------~~~~d 67 (421)
T 3ab4_A 1 MALVVQKYGGSSLESA------ERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAVNPVP-P------AREMD 67 (421)
T ss_dssp -CEEEEEECSGGGSSH------HHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHHCSSC-C------HHHHH
T ss_pred CCeEEEEEChhHhCCH------HHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhhccCC-C------HHHHH
Confidence 4789999999999863 468999999999999999999999866656766665443222111 0 01234
Q ss_pred HHHHhchHHHHHHHHHHhccCCCCc-----cee-EecccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccCCCCC
Q 006484 94 ACAAVGQSSLMALYDTLFSQLDVTS-----SQL-LVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYE 167 (643)
Q Consensus 94 ~~~a~G~~~~~~~~~~~l~~~g~~~-----~~~-~~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~ 167 (643)
.+.++|+.....++...|...|+++ .|+ ++++..|........+.+.|+.+|++|.|||+.|+.++..
T Consensus 68 ~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~i~~~l~~g~ipVv~g~~g~~~------ 141 (421)
T 3ab4_A 68 MLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDVTPGRVREALDEGKICIVAGFQGVNK------ 141 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEECCCC-----------------CCHHHHHHHHHTTCEEEC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCCCeeechhhHHHHHHHHhCCCEEEEeCCcCcCC------
Confidence 6678898777777889999999876 444 3444444322222234688999999999999987433332
Q ss_pred CC-Cce----eecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCchH
Q 006484 168 DS-SGI----FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTA 241 (643)
Q Consensus 168 ~~-~~~----~~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~ 241 (643)
+ |.. ++++|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.++...| .|..
T Consensus 142 -~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~G--------a~v~ 212 (421)
T 3ab4_A 142 -ETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVG--------SKIL 212 (421)
T ss_dssp -----------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTT--------CCSS
T ss_pred -CCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhcC--------CcCc
Confidence 2 222 26999999999999999999999999999999996 8999999999999999876643 3556
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCcchHHHHHcCCceeeEEecC
Q 006484 242 KVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (643)
Q Consensus 242 Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~~g~~~GT~i~~~ 283 (643)
|++++..+.+.|+|++|.|++.| ..||+|.+.
T Consensus 213 ~~~a~~~a~~~gi~v~I~n~~~~----------~~GT~I~~~ 244 (421)
T 3ab4_A 213 VLRSVEYARAFNVPLRVRSSYSN----------DPGTLIAGS 244 (421)
T ss_dssp CHHHHHHHHHTTCCEEEEESSSC----------CCCEEECSC
T ss_pred hHHHHHHHHHcCCCEEEecCcCC----------CCCeEEEec
Confidence 78899999999999999999876 469999875
No 90
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.1e-29 Score=271.54 Aligned_cols=241 Identities=18% Similarity=0.154 Sum_probs=173.2
Q ss_pred cceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCccc-ccCcccchhH
Q 006484 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQNELDG 92 (643)
Q Consensus 14 ~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~-l~~~~~~l~~ 92 (643)
++++|||+||++++++ ++.++++|+.|++.|.++|||||||+++++.+.. .++++.|.+ ++.+...-..
T Consensus 61 ~~~iViK~GG~v~~~~--------l~~va~dI~~l~~~G~~~VvVHGgg~~i~~~l~~--~gi~~~f~~G~RvTd~~~l~ 130 (467)
T 3s6k_A 61 KRFAVVKVGGAVLRDD--------LEALTSSLSFLQEVGLTPIVLHGAGPQLDAELSA--AGIEKQTVNGLRVTSPHALA 130 (467)
T ss_dssp TTSCCCCCCHHHHTTC--------CHHHHHHHHHHHTTSCCCCCCCCCCHHHHHHHHT--TSCCCCCCSSSCCBCHHHHH
T ss_pred CcEEEEEEChHHhhhH--------HHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHH--cCCCccccCCccCCCHHHHH
Confidence 3789999999977653 5899999999999999999999999999886533 356655543 3333211111
Q ss_pred HHHHHhchHHHHHHHHHHhccCCCCccee----E----ecccccCcchh-hchHHHHHHHHHhCCCeeEecCCCceeccC
Q 006484 93 KACAAVGQSSLMALYDTLFSQLDVTSSQL----L----VTDSDFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVSTRK 163 (643)
Q Consensus 93 ~~~~a~G~~~~~~~~~~~l~~~g~~~~~~----~----~t~~~~~~~~~-~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~ 163 (643)
....++|+... .+...|...|+++..+ + .+..++...+. ..++.+.|+.+|++|.|||+++++
T Consensus 131 vv~~~~g~vn~--~Lv~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~pvg------ 202 (467)
T 3s6k_A 131 IVRKVFQASNL--KLVEALQQNGARATSITGGVFEAEYLNRDTYGLVGEVKAVNLAPIEASLQAGSIPVITSLG------ 202 (467)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHTCCBCCCCSSSBCCCBSCSSSSBSBBCCCCBCCHHHHTHHHHTCBCCCCSCC------
T ss_pred HHHHHHHHHHH--HHHHHHHhCCCCceEEcCccEEEEeccCcccCccceEEEEcHHHHHHHHHCCCEEEEECce------
Confidence 12223343322 1223444455443322 1 11223332232 235678999999999999997421
Q ss_pred CCCCCCCcee-ecchhHHHHHHhhcCCCEEEEeccCCccccCCCCCCCccceeeeecc-cchhHHhcCCCCCccCCCchH
Q 006484 164 APYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRA-KHQAEITFGDKSRVGRGGMTA 241 (643)
Q Consensus 164 ~~~~~~~~~~-~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~~p~a~~i~~i~~~-e~~~~~~~g~~~~~~~ggM~~ 241 (643)
++..|..+ +|+|++|+++|.+|+||+|+|+|||||||+++ +++|++|+.+ |+.+++.. ..++|||.|
T Consensus 203 --~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~~-----~~lI~~i~~~~e~~~l~~~----~~~tGGM~~ 271 (467)
T 3s6k_A 203 --ETPSGQILNVNADFAANELVQELQPYKIIFLTGTGGLLDAE-----GKLIDSINLSTEYDHLMQQ----PWINGGMRV 271 (467)
T ss_dssp --CCSSSCCCBCCHHHHHHHHHHHHCCSSCCCCCSSCSCCCSS-----CCCCCCCCTTTTTHHHHTS----SSCCSHHHH
T ss_pred --ECCCCcEEecCHHHHHHHHHHhcCCCEEEEEecccceeCCC-----CCCccccChHHHHHHHHhc----CCCCCchHH
Confidence 11234444 99999999999999999999999999999863 7899999986 77766653 377999999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCcchH-HHHHcCCceeeEEecC
Q 006484 242 KVNAAYCAACAGIPVVITSGFAMDSI-IKVLEGKRVGTLFHRD 283 (643)
Q Consensus 242 Kl~aa~~a~~~gv~v~I~~g~~~~~l-~~~~~g~~~GT~i~~~ 283 (643)
|+++|..+++.+.+++|++++.|+.| .++++++..||+|.+.
T Consensus 272 Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 314 (467)
T 3s6k_A 272 KIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRRG 314 (467)
T ss_dssp HHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCCC
T ss_pred HHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEeCC
Confidence 99999998884445999999999998 5788988899999876
No 91
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=99.95 E-value=2e-28 Score=274.32 Aligned_cols=238 Identities=19% Similarity=0.210 Sum_probs=174.5
Q ss_pred cceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCCcccccCcccchhHH
Q 006484 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGK 93 (643)
Q Consensus 14 ~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 93 (643)
|+++|+||||+++.+. +.+++++++|+.+++.|+++||||||++..++.+++.......++ .. -..+
T Consensus 1 m~~iViK~GGssl~~~------~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~~~~~~---~~----~~~d 67 (600)
T 3l76_A 1 MALIVQKFGGTSVGTV------ERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQISPNP---CR----REMD 67 (600)
T ss_dssp -CEEEEEECSGGGSSH------HHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHHHCSSC---CH----HHHH
T ss_pred CceEEEEeCCCCcCCH------HHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHhhccCC---CH----HHHH
Confidence 4689999999999874 468999999999999999999999994445555555433222111 00 1235
Q ss_pred HHHHhchHHHHHHHHHHhccCCCCc-----ceeE-ecccccCcchhhchHHHHHHHHHhCCCeeEecCCCceeccCCCCC
Q 006484 94 ACAAVGQSSLMALYDTLFSQLDVTS-----SQLL-VTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYE 167 (643)
Q Consensus 94 ~~~a~G~~~~~~~~~~~l~~~g~~~-----~~~~-~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~ 167 (643)
++.++|+...+.++..+|..+|+++ .|+. ++++.+........+.+.|+.+|+.|.|||+.|+.++...+.. .
T Consensus 68 ~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~i~~ll~~g~IpVv~Gf~g~~~~g~~-~ 146 (600)
T 3l76_A 68 MLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILEIRPDRLEHHLREGKVVVVAGFQGISSVEHL-E 146 (600)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC-------CCEEEECCHHHHHTTTCEEEEECEEEC----CE-E
T ss_pred HHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCCCceeccccHHHHHHHHhCCCEEEEECCeecCCCCCE-E
Confidence 8889999888889999999999884 4443 3333332221222234678999999999999873222110000 0
Q ss_pred CCCceeecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHH
Q 006484 168 DSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAA 246 (643)
Q Consensus 168 ~~~~~~~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa 246 (643)
.....++++|++|+.+|.+|+||+|+|||||||||++||+ +|++++|++|+++|+.++.. .+.|+|.| +++
T Consensus 147 ~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~------~G~~vm~p--~a~ 218 (600)
T 3l76_A 147 ITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELAS------LGAKVLHP--RAV 218 (600)
T ss_dssp EECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGG------GGTTTCCH--HHH
T ss_pred EecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHh------CCCCccHH--HHH
Confidence 0011136799999999999999999999999999999996 99999999999999987655 45799998 899
Q ss_pred HHHHHcCCcEEEEeCCCcchHHHHHcCCceeeEEecC
Q 006484 247 YCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (643)
Q Consensus 247 ~~a~~~gv~v~I~~g~~~~~l~~~~~g~~~GT~i~~~ 283 (643)
..|.+.|+|++|.|++.+ ..||+|...
T Consensus 219 ~~a~~~gipv~I~n~~~~----------~~GT~I~~~ 245 (600)
T 3l76_A 219 EIARNYGIPLVVRSSWSD----------EPGTKVVAP 245 (600)
T ss_dssp HHHHHHTCCEEEEETTCC----------SCCEEEECC
T ss_pred HHHHHCCCeEEEEECCCC----------CCCeEEecC
Confidence 999999999999998864 369998765
No 92
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=99.92 E-value=9.9e-25 Score=238.71 Aligned_cols=237 Identities=19% Similarity=0.275 Sum_probs=179.5
Q ss_pred eEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCC-eEEEEeCChhHhhHHHhhhhhhcCC--Ccc-------c---
Q 006484 16 RLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGF-EIILVSSGAVGVGRQRLRYRKLVNS--SLA-------D--- 82 (643)
Q Consensus 16 ~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~-~vvlVhGGg~~i~~~~~~~~~~~~~--~~~-------~--- 82 (643)
++|.||||+++.+. ++++++++.|... ..|+ ++|+|.|+++.++..++..+..... ... .
T Consensus 2 ~~V~KFGGtSv~~~------~~i~~va~ii~~~-~~~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~~ 74 (473)
T 3c1m_A 2 TTVMKFGGTSVGSG------ERIRHVAKIVTKR-KKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIRE 74 (473)
T ss_dssp CEEEEECTTTTSSH------HHHHHHHHHHHHH-HTTCSCEEEEECCSTTHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCcccCCH------HHHHHHHHHHHHh-hcCCCCEEEEEcCChhhHHHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 68999999999974 4688888888766 6788 9999999999888877665432211 000 0
Q ss_pred --------ccCc----c--------------------------cchhHHHHHHhchHHHHHHHHHHhccCCCCcc-----
Q 006484 83 --------LQKP----Q--------------------------NELDGKACAAVGQSSLMALYDTLFSQLDVTSS----- 119 (643)
Q Consensus 83 --------l~~~----~--------------------------~~l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~----- 119 (643)
+... + ..-....+.++|+.....++...|...|+++.
T Consensus 75 ~~~~~~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~ge~~s~~l~~~~L~~~G~~a~~l~~~ 154 (473)
T 3c1m_A 75 KHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGG 154 (473)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEch
Confidence 0000 0 00012355667877777777889999998764
Q ss_pred ee-EecccccCcchh-hchHHHHHHHHHhCCCeeEecCCCceeccCCCCCCCCce----eecchhHHHHHHhhcCCCEEE
Q 006484 120 QL-LVTDSDFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI----FWDNDSLAGLLALELKADLLV 193 (643)
Q Consensus 120 ~~-~~t~~~~~~~~~-~~~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~~----~~~~D~~A~~lA~~L~Ad~li 193 (643)
++ ++++.+|..... ...+.+.|+.+++.|+|||++|+.++.. +|.. ++|+|++|+.+|.+|+||+|+
T Consensus 155 ~~~i~t~~~~~~~~~~~~~~~~~i~~ll~~g~ipVv~G~~g~~~-------~g~~~~l~rg~sD~~Aa~lA~~l~Ad~l~ 227 (473)
T 3c1m_A 155 EAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTE-------EGYITTLGRGGSDYSAALIGYGLDADIIE 227 (473)
T ss_dssp HHTEEECSCTTSCCEEEECHHHHHHHHHHTTCEEEEESSEEEET-------TSCEEECCTTTHHHHHHHHHHHTTCSEEE
T ss_pred heeEEEccCCCCccccHhhhHHHHHHHHhCCcEEEEeCCcccCC-------CCCEEEeCCCChHHHHHHHHHHcCCCEEE
Confidence 44 566666554333 3567889999999999999988544432 2222 279999999999999999999
Q ss_pred EeccCCccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHc
Q 006484 194 LLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLE 272 (643)
Q Consensus 194 ~lTdVdGVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~~ 272 (643)
++|||||||++||+ +|++++|++|+++|+.++... +.+||.|| ++..+.+.|++++|.|++.|+
T Consensus 228 i~TDVdGv~~~dP~~~~~a~~i~~is~~e~~~l~~~------g~~~m~~~--a~~~a~~~gi~v~I~~~~~~~------- 292 (473)
T 3c1m_A 228 IWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYF------GAKVLHPR--TIEPAMEKGIPILVKNTFEPE------- 292 (473)
T ss_dssp EEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHHHHT------TCTTSCGG--GHHHHHHHTCCEEEEETTSTT-------
T ss_pred EeeCCCcceeCCCCCCCCCeEecccCHHHHHHHHhc------CCcchHHH--HHHHHHHcCCEEEEEecCCCC-------
Confidence 99999999999996 899999999999999987654 36899997 888899999999999999874
Q ss_pred CCceeeEEecC
Q 006484 273 GKRVGTLFHRD 283 (643)
Q Consensus 273 g~~~GT~i~~~ 283 (643)
..||+|.+.
T Consensus 293 --~~GT~i~~~ 301 (473)
T 3c1m_A 293 --SEGTLITND 301 (473)
T ss_dssp --SCCEEEESC
T ss_pred --CceEEEecc
Confidence 579999875
No 93
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=99.92 E-value=1.3e-24 Score=235.29 Aligned_cols=236 Identities=18% Similarity=0.156 Sum_probs=171.1
Q ss_pred cceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhc---------CC---Ccc
Q 006484 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLV---------NS---SLA 81 (643)
Q Consensus 14 ~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~---------~~---~~~ 81 (643)
|+++|.||||+++.+. ++++++++.|.. ...++|+|+|+++.++..++...... .. .+.
T Consensus 2 m~~~V~KFGGTSv~~~------e~i~~va~ii~~---~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~i~~i~~~~~ 72 (449)
T 2j0w_A 2 SEIVVSKFGGTSVADF------DAMNRSADIVLS---DANVRLVVLSASAGITNLLVALAEGLEPGERFEKLDAIRNIQF 72 (449)
T ss_dssp -CCEEEEECSGGGSSH------HHHHHHHHHHTS---CTTEEEEEECCCTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCccCCCH------HHHHHHHHHHHh---cCCCEEEEeCCCCchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 5789999999999874 356777777643 34589999999999988876644321 00 000
Q ss_pred c----ccC------------------------cccchhHHHHHHhchHHHHHHHHHHhccCCCCc-----ceeEeccccc
Q 006484 82 D----LQK------------------------PQNELDGKACAAVGQSSLMALYDTLFSQLDVTS-----SQLLVTDSDF 128 (643)
Q Consensus 82 ~----l~~------------------------~~~~l~~~~~~a~G~~~~~~~~~~~l~~~g~~~-----~~~~~t~~~~ 128 (643)
+ +.. ....-..+.+.++|+..++.++...|...|+++ .|+++|+++|
T Consensus 73 ~i~~~l~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~l~t~~~~ 152 (449)
T 2j0w_A 73 AILERLRYPNVIREEIERLLENITVLAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRF 152 (449)
T ss_dssp HHHTTSSSTHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSCT
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHhhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHheeecCCC
Confidence 0 000 000122468889999999989999999999877 6776777676
Q ss_pred Ccchhhc-----hHHHHHHHHHhCCCeeEecCCCceeccCCCCCCCCce----eecchhHHHHHHhhcCCCEEEEeccCC
Q 006484 129 RDEDFRK-----QLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI----FWDNDSLAGLLALELKADLLVLLSDVE 199 (643)
Q Consensus 129 ~~~~~~~-----~~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~~----~~~~D~~A~~lA~~L~Ad~li~lTdVd 199 (643)
.+...+. +..+.++.|++.+ |||++|+-+... +|.. ++++|++|+.+|.+|+||+|+|+||||
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~l~~~~-IpVv~Gf~g~~~-------~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVd 224 (449)
T 2j0w_A 153 GRAEPDIAALAELAALQLLPRLNEG-LVITQGFIGSEN-------KGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVP 224 (449)
T ss_dssp TSCCBCHHHHHHHHHHHTHHHHHHS-EEEEESSEEECT-------TSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CCccccHhHhHHHHHHHHHHHhcCC-EEEEeCCeeeCC-------CCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccC
Confidence 5533322 1244666777655 999987433322 2222 266999999999999999999999999
Q ss_pred ccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHcCCceee
Q 006484 200 GLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGT 278 (643)
Q Consensus 200 GVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~~g~~~GT 278 (643)
|||++||+ +|++++|++|+++|+.++...| ..-|.| +++..|.+.|+|++|.|++.|+ ..||
T Consensus 225 Gv~~~DPr~~~~a~~i~~is~~e~~ela~~G------~kvlh~--~a~~~a~~~gi~v~I~~~~~p~---------~~GT 287 (449)
T 2j0w_A 225 GIYTTDPRVVSAAKRIDEIAFAEAAEMATFG------AKVLHP--ATLLPAVRSDIPVFVGSSKDPR---------AGGT 287 (449)
T ss_dssp SEESSCTTTCTTCCEESEEEHHHHHHHHHTT------CTTSCT--TTHHHHHHHTCCEEEEESSCTT---------SCCE
T ss_pred CcCcCCCCCCCCCEEccCccHHHHHHHHhcC------CccchH--HHHHHHHHCCCeEEEEECCCCC---------CCee
Confidence 99999996 8999999999999998865533 122222 6888899999999999999874 5799
Q ss_pred EEecC
Q 006484 279 LFHRD 283 (643)
Q Consensus 279 ~i~~~ 283 (643)
+|.+.
T Consensus 288 ~I~~~ 292 (449)
T 2j0w_A 288 LVCNK 292 (449)
T ss_dssp EEESC
T ss_pred EEecc
Confidence 99875
No 94
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=99.92 E-value=7.1e-24 Score=232.11 Aligned_cols=239 Identities=14% Similarity=0.143 Sum_probs=175.0
Q ss_pred cceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhHHHhhhhhhcCCC------cc----c-
Q 006484 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSS------LA----D- 82 (643)
Q Consensus 14 ~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~~~~~~~~~~~~~------~~----~- 82 (643)
++++|.||||+++.+. ++++++++.|... .++++|+|+|+++.++..+++........ +. .
T Consensus 26 ~~~~V~KFGGTSva~~------e~i~~va~iI~~~--~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~~~~~~~~~~~~~i 97 (510)
T 2cdq_A 26 GITCVMKFGGSSVASA------ERMKEVADLILTF--PEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSII 97 (510)
T ss_dssp CCCEEEEECTGGGSSH------HHHHHHHHHHHHC--TTCCEEEEECCSTTHHHHHHHHHHHHTTTCTTTGGGCHHHHHH
T ss_pred CCeEEEEECCcccCCH------HHHHHHHHHHHhc--cCCCEEEEEcCCCCCchHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4679999999999974 3678888877532 35789999999988888776544321000 00 0
Q ss_pred ----------c--c---------------------CcccchhHHHHHHhchHHHHHHHHHHhccCCCCc-----cee-Ee
Q 006484 83 ----------L--Q---------------------KPQNELDGKACAAVGQSSLMALYDTLFSQLDVTS-----SQL-LV 123 (643)
Q Consensus 83 ----------l--~---------------------~~~~~l~~~~~~a~G~~~~~~~~~~~l~~~g~~~-----~~~-~~ 123 (643)
+ + .....-..+.+.++|+..+..++...|...|+++ .++ ++
T Consensus 98 ~~~h~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~l~ 177 (510)
T 2cdq_A 98 KELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFI 177 (510)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCE
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHeeEE
Confidence 0 0 0000112357889999998888999999999874 455 66
Q ss_pred cccccCcch----hhchHHHHHHH-HHhCCCeeEecCCCceeccCCCCCCCCc-e---eecchhHHHHHHhhcCCCEEEE
Q 006484 124 TDSDFRDED----FRKQLYDTVQS-LLDLRVIPIFNENDAVSTRKAPYEDSSG-I---FWDNDSLAGLLALELKADLLVL 194 (643)
Q Consensus 124 t~~~~~~~~----~~~~~~~~i~~-ll~~g~iPVv~g~d~v~~~~~~~~~~~~-~---~~~~D~~A~~lA~~L~Ad~li~ 194 (643)
|+++|.+.. .+.+..+.+.. |++.|.|||++|+-+.... +|. . ++++|++|+.+|.+|+||.|++
T Consensus 178 t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~~~------~g~ittlgrGgsD~tAa~lA~~l~Ad~l~i 251 (510)
T 2cdq_A 178 TTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWK------TGAVTTLGRGGSDLTATTIGKALGLKEIQV 251 (510)
T ss_dssp ECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEETT------TCCEEECCTTHHHHHHHHHHHHHTCSEEEE
T ss_pred EecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccCCC------CCceEEeCCCChHHHHHHHHHHcCCCEEEE
Confidence 666655432 12233456664 7899999999874433220 111 1 2679999999999999999999
Q ss_pred eccCCccccCCCC-CCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHcC
Q 006484 195 LSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEG 273 (643)
Q Consensus 195 lTdVdGVy~~~P~-~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~~g 273 (643)
+|||||||+.||+ +|++++|++|+++|+.++.. .+.++|.|| ++..+.++|+|++|.|++.|+
T Consensus 252 ~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~------~Ga~vmh~~--a~~~a~~~gIpv~I~n~~~p~-------- 315 (510)
T 2cdq_A 252 WKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAY------FGAQVLHPQ--SMRPAREGEIPVRVKNSYNPK-------- 315 (510)
T ss_dssp EESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHH------HHSSCCCHH--HHHHHHHHTCCEEEEETTSTT--------
T ss_pred EeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHh------cCcchhHHH--HHHHHHHCCCeEEEEccCcCC--------
Confidence 9999999999996 89999999999999987654 346889875 888899999999999999874
Q ss_pred CceeeEEecC
Q 006484 274 KRVGTLFHRD 283 (643)
Q Consensus 274 ~~~GT~i~~~ 283 (643)
..||+|.+.
T Consensus 316 -~~GT~I~~~ 324 (510)
T 2cdq_A 316 -APGTIITKT 324 (510)
T ss_dssp -SCCEEEESC
T ss_pred -CCCeEEecc
Confidence 469999875
No 95
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=99.90 E-value=4.6e-24 Score=229.88 Aligned_cols=234 Identities=15% Similarity=0.144 Sum_probs=170.5
Q ss_pred ceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhH-------hhHHHhhhhhhcCCC--ccc---
Q 006484 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVG-------VGRQRLRYRKLVNSS--LAD--- 82 (643)
Q Consensus 15 ~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~-------i~~~~~~~~~~~~~~--~~~--- 82 (643)
+++|.||||+++.+. ++++++++.|.. .+.++|+|.|+++. ++..++........+ +..
T Consensus 3 ~m~V~KFGGtSva~~------e~i~~Va~iI~~---~~~~~vVVVSA~gk~~~~d~g~Td~Li~~a~~~~~~~~~~~~~~ 73 (446)
T 3tvi_A 3 KIVVTKFGGSSLADS------NQFKKVKGIIDS---DANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNGIPFDDVFK 73 (446)
T ss_dssp -CEEEEECGGGGSSH------HHHHHHHHHHTT---CTTEEEEEECSCCCSSSSSCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred ccEEEEeCccccCCH------HHHHHHHHHHHh---cCCCEEEEECCCCCCCCCCcchHHHHHHHHHHhhcCccHHHHHH
Confidence 468999999999974 357777777753 47799999999873 677666544322111 100
Q ss_pred -ccCcc----------c----c-----------hhHHHHHHhchHHHHHHHHHHhccCCCCcceeEecccccCcchhhch
Q 006484 83 -LQKPQ----------N----E-----------LDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQ 136 (643)
Q Consensus 83 -l~~~~----------~----~-----------l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~t~~~~~~~~~~~~ 136 (643)
+.... . . -....+.+.|+..+..++..+|....+.+.|+.++.+ ........
T Consensus 74 ~i~~~~~~i~~~L~~~~~~~~~l~~~~~~l~~~~~~D~lls~GE~lS~~lla~~l~a~~~~~~~~~~~~~--~~~~~~~~ 151 (446)
T 3tvi_A 74 LISQRYTEIVSELNIDMDIAYYLEKVKKNIENGASSDYAASRGEYLNGVILAKYLNAEFIDAAEVIFFDK--SGCFDEKK 151 (446)
T ss_dssp HHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCEECCGGGTCBBCC----CBCHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCccHHHHHHhHHHHHHHHHHHHhcceeECHHHheeeCC--CCceehHh
Confidence 00000 0 0 0134677999998888888889888888888766544 22222334
Q ss_pred HHHHHHHHHhCCCeeEecCCCceeccCCCCCCCCce----eecchhHHHHHHhhcCCCEEEEeccCCccccCCCC-CCCc
Q 006484 137 LYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI----FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNS 211 (643)
Q Consensus 137 ~~~~i~~ll~~g~iPVv~g~d~v~~~~~~~~~~~~~----~~~~D~~A~~lA~~L~Ad~li~lTdVdGVy~~~P~-~p~a 211 (643)
..+.+..+++.|.|||+.|+.+... +|.. ++++|++|+.+|.+|+||+|+++|||||||+.||+ +|++
T Consensus 152 ~~~~l~~~l~~~~v~Vv~Gf~g~~~-------~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a 224 (446)
T 3tvi_A 152 SYEKIKEKVLSCNKAVIPGFYGSSF-------NGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENP 224 (446)
T ss_dssp HHHHHHHHTTTCSSEECCCSEEECT-------TSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSC
T ss_pred hHHHHHHHHhcCCeEEeeCceecCC-------CCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCC
Confidence 5788999999999999988433322 2221 27899999999999999999999999999999996 9999
Q ss_pred cceeeeecccchhHHhcCCCCCccCCCchHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHcCCceeeEEecC
Q 006484 212 KLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 283 (643)
Q Consensus 212 ~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv~v~I~~g~~~~~l~~~~~g~~~GT~i~~~ 283 (643)
++|++|+++|+.++... +.++| |++++..+.++|+|++|.|++.|+ ..||+|.+.
T Consensus 225 ~~i~~is~~e~~ela~~------Ga~vl--~~~a~~~a~~~~ipi~i~~~~~p~---------~~GT~i~~~ 279 (446)
T 3tvi_A 225 KTISKISYKELRELSYM------GATVL--HEEAIFPVKDSGIPINIKNTNKPS---------DPGTLILSD 279 (446)
T ss_dssp CBCSEEEHHHHHHTTTC----------C--CSTTTHHHHHSSCCEEEEETTBTT---------SCCEEEECT
T ss_pred eEcceeCHHHHHHHHhC------CCCcc--hHHHHHHHHHcCCeEEEecCCCCC---------CCCEEEecC
Confidence 99999999999876543 35667 457999999999999999998874 469999876
No 96
>4gic_A HDH, histidinol dehydrogenase; protein structure initiative, STR genomics, PSI-biology, NEW YORK structural genomics researc consortium; 2.05A {Methylococcus capsulatus}
Probab=95.48 E-value=2 Score=44.74 Aligned_cols=232 Identities=14% Similarity=0.124 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHhcccccccccccccccCCCeeEEEEeeeeeeEEEEcCC----CchhHHHHHHHHHHhCCE--EEEeCC
Q 006484 363 KISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES----RPDALVQIASLAIRSGNG--LLLKGG 436 (643)
Q Consensus 363 ~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~----~P~~~~~~~~~AlaaGN~--vi~Kps 436 (643)
.++.+.++++.|.+...+..... ...+|.....++.|+--|++..|- +|-..++.++||-.||+. |+.-|.
T Consensus 93 ai~~A~~~I~~fh~~Q~~~~~~~---~~~~G~~~g~~~~Pi~~VGlYVPGG~A~ypSsvLM~aiPAkVAGV~~Iv~~tPp 169 (423)
T 4gic_A 93 ALREAAERIRAYAERQKLDSWDY---READGTLLGQKITPLDRVGLYVPGGKAAYPSSVLMNAVPAKVAGVPELIMAVPA 169 (423)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEE---ECTTSCEEEEEEEECSEEEEECCCSTTCCHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHHHHHHHHHHhcccCCccc---ccCCCCEEEEEEEEecceeEEeeCCCCchhhHHHHhhccHHHhCCCeEEEecCC
Confidence 45666677777654222211111 113566777889999999999993 465566788999999986 444454
Q ss_pred cc---hHHHHHHHHHHHHHhcccccCcCceEeec-CcchHhHhhh----CCCCccEEEeecCHHHH--HHHHHhcCCCEE
Q 006484 437 KE---AMRSNAILHKVITSAIPDTVGEKLIGLVT-SREEIPDLLK----LDDVIDLVIPRGSNKLV--SQIKESTKIPVL 506 (643)
Q Consensus 437 ~~---tp~t~~~~~~l~~~a~~~alP~g~v~~v~-~~~~~~~~l~----~~~~v~~i~fTGs~~~g--~~i~~~a~~p~~ 506 (643)
+. .|.+ +..+++ .|+=.+.. |+...-..|. .=|.||+|+=-|..=|. |+.. .+.--+
T Consensus 170 ~~G~i~p~i-L~AA~l----------~Gv~eIy~vGGAQAIAAlAyGTetI~~VDkIvGPGN~yVa~AKr~v--~g~VgI 236 (423)
T 4gic_A 170 PRGELNALV-LAAAYI----------SGVDRVFRIGGAQAVAALAYGTETVPRVDKIVGPGNIYVATAKKLV--FGQVGI 236 (423)
T ss_dssp GGGCCCHHH-HHHHHH----------HTCCEEECCCHHHHHHHHHHCCSSSCCCSEEECCCCHHHHHHHHHH--BTTBEE
T ss_pred CCCCccHHH-HHHHHh----------cCCcEEEEcCChhhhhhhccCCCcccceeEEecCCcHHHHHHHHHh--cCCcCc
Confidence 42 2322 122222 25555555 6543222221 23679999988886543 2221 121111
Q ss_pred EecCccce--EEEcCCCCHHHHHHHHHhhcCCCCCccccceeEEEcCccCCchhHHHHHHHHHHcCCEEecCcccccccc
Q 006484 507 GHADGICH--VYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ 584 (643)
Q Consensus 507 lelGG~~p--~iV~~dAdl~~A~~~iv~~~~~n~g~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~~~~~g~~~~~~~~p 584 (643)
--.-|-+= +|-|++||.+..+.+++.=+=.... .+-++|..| .+|.+++.++++++-. .
T Consensus 237 Dm~AGPSEilViAD~~a~p~~vAaDLlsQAEHd~~----a~~iLvT~s---~~la~~V~~~i~~~l~---~--------- 297 (423)
T 4gic_A 237 DMVAGPSEILVISDGRTDPDWIAMDLFSQAEHDED----AQAILISPD---AAHLEAVQASIERLLP---G--------- 297 (423)
T ss_dssp CCCCCCCEEEEEECSCSCHHHHHHHHHHHHTTCTT----CEEEEEESC---HHHHHHHHHHHHHHGG---G---------
T ss_pred ccccccceEEEEeCCCCCHHHHHHHHHHhhccCCC----CeEEEEeCc---HHHHHHHHHHHHHHHh---h---------
Confidence 11223322 4446679999988887754433222 123566555 4677777777665310 0
Q ss_pred CCCCccccc--cccCceEEEEEeCCHHHHHHHHHccCCCceeEEEecCHHH
Q 006484 585 IPETRLFHH--EYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKV 633 (643)
Q Consensus 585 v~~~~~~~e--E~FgPvl~v~~~~~~deAi~~aN~~~~GL~a~v~t~d~~~ 633 (643)
++...+..+ +-+| .++.++|++||++++|..--= -.-|.++|...
T Consensus 298 l~r~~i~~~sl~~~g---~ii~v~~~~ea~~~~N~~APE-HLel~~~~~~~ 344 (423)
T 4gic_A 298 MERAEVIRTSLERRG---GMILVDDLEQAAAVANRIAPE-HLELSVESPEV 344 (423)
T ss_dssp CTTHHHHHHHHHHHC---EEEECSSHHHHHHHHHHHCCS-EEEEESSCHHH
T ss_pred CccHHHHHHHHhcCc---eEEEEeehHHHHHHHHhhChH-HhhhhhCCHHH
Confidence 011112111 1233 455689999999999996533 45677777653
No 97
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase, homodimer, rossman fold, 4 domai L-histidine biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A {Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A* 1kar_A
Probab=91.71 E-value=14 Score=38.54 Aligned_cols=234 Identities=10% Similarity=0.104 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHhcccccccccccccccCCCeeEEEEeeeeeeEEEEcCC----CchhHHHHHHHHHHhCCEEEE--eCC
Q 006484 363 KISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES----RPDALVQIASLAIRSGNGLLL--KGG 436 (643)
Q Consensus 363 ~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~PlGvv~~I~p~----~P~~~~~~~~~AlaaGN~vi~--Kps 436 (643)
-++.+.++++.|.....+..... ....|.....++.|+--|++..|- +|-..++.++||-.||+.=|+ -|.
T Consensus 87 ai~~A~~nI~~fH~~Q~~~~~~~---~~~~Gv~~gq~~~Pi~rvGlYVPGG~a~ypSsvLM~aiPAkVAGV~~Iv~~tPp 163 (434)
T 1kae_A 87 AMAVAVKNIETFHTAQKLPPVDV---ETQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPP 163 (434)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEE---EEETTEEEEEEEEECSEEEEECCCSSSCCTHHHHHHHHHHHHHTCSEEEEEECS
T ss_pred HHHHHHHHHHHHHHHhcCCCceE---EecCCcEEEEEEeehheEEEEecCCCCCchhHHHHhhccHhhcCCCeEEEECCC
Confidence 45666677777754332211011 112377777889999999999993 565566778999999986444 444
Q ss_pred cchHHHHHHHHHHHHHhcccccCcCceEeec-CcchHhHhh----hCCCCccEEEeecCHHH--HHHHHHh-cCCCEEEe
Q 006484 437 KEAMRSNAILHKVITSAIPDTVGEKLIGLVT-SREEIPDLL----KLDDVIDLVIPRGSNKL--VSQIKES-TKIPVLGH 508 (643)
Q Consensus 437 ~~tp~t~~~~~~l~~~a~~~alP~g~v~~v~-~~~~~~~~l----~~~~~v~~i~fTGs~~~--g~~i~~~-a~~p~~le 508 (643)
.-.|.+ +..+++ .|+=.+.. |+...-..| ..=|.||+|+=-|..=| +|+.... .+.--+=-
T Consensus 164 ~i~p~i-L~AA~l----------~Gv~eIy~vGGAQAIAAlAyGTetIp~VDkI~GPGN~yVa~AKr~Vs~~~G~VgIDm 232 (434)
T 1kae_A 164 PIADEI-LYAAQL----------CGVQDVFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDM 232 (434)
T ss_dssp SCCHHH-HHHHHH----------TTCCEEEECCHHHHHHHHHHCCSSSCCCSEEECCCCHHHHHHHHHHHHCTTSCEESC
T ss_pred CCCHHH-HHHHHH----------cCCCEEeecccHHHHHHHHcCCCCCCCccEEECCCcHHHHHHHHHhHhhcCccccCC
Confidence 334432 111222 34445554 554322222 22378999988887543 4444311 22111111
Q ss_pred cCccce--EEEcCCCCHHHHHHHHHhhcCCCCCccccceeEEEcCccCCchhHHHHHHHHHHcCCEEecCccccccccCC
Q 006484 509 ADGICH--VYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQIP 586 (643)
Q Consensus 509 lGG~~p--~iV~~dAdl~~A~~~iv~~~~~n~g~C~a~~rv~V~~~i~~~~f~~~l~~~~~~~~~~~~g~~~~~~~~pv~ 586 (643)
.-|-+= +|-|++||.+..+.+++.=+=.... .+-++|..| ++|.+++.++++++-. . +|
T Consensus 233 ~AGPSEilViAD~tAnp~~vAaDLLsQAEHd~~----a~aiLvT~s---~~la~~V~~ev~~ql~---~---------lp 293 (434)
T 1kae_A 233 PAGPSEVLVIADSGATPDFVASDLLSQAEHGPD----SQVILLTPA---ADMARRVAEAVERQLA---E---------LP 293 (434)
T ss_dssp CCCCCEEEEEECTTSCHHHHHHHHHHHHTTCTT----CEEEEEESC---HHHHHHHHHHHHHHHT---T---------CT
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHhccCCC----CcEEEEECC---HHHHHHHHHHHHHHHH---h---------CC
Confidence 223322 4446779999988877754433221 123555544 3666666666654200 0 01
Q ss_pred CCccccccccCceEEEEEeCCHHHHHHHHHccCCCceeEEEecCHH
Q 006484 587 ETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQK 632 (643)
Q Consensus 587 ~~~~~~eE~FgPvl~v~~~~~~deAi~~aN~~~~GL~a~v~t~d~~ 632 (643)
...+. ++-+..- .++-++|+|||++++|..-.= -.-|.++|..
T Consensus 294 r~~ia-~~sl~~~-~ii~v~~l~ea~~~~N~~APE-HLel~~~dp~ 336 (434)
T 1kae_A 294 RAETA-RQALNAS-RLIVTKDLAQCVEISNQYGPE-HLIIQTRNAR 336 (434)
T ss_dssp THHHH-HHHHTTC-EEEECSSHHHHHHHHHHHCCS-EEEEESTTHH
T ss_pred hHHHH-HHHHHcC-eEEEECCHHHHHHHHHHhhhH-hhhhhhcCHH
Confidence 11121 2223344 677799999999999996543 4567777765
No 98
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=36.34 E-value=33 Score=32.84 Aligned_cols=43 Identities=12% Similarity=0.333 Sum_probs=35.3
Q ss_pred ccceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 006484 13 DVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (643)
Q Consensus 13 ~~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGG 61 (643)
+.|.|++=+.|.++.+.. .+....+.|.+++++|++++++.|.
T Consensus 5 ~~kli~~DlDGTLl~~~~------~~~~~~~ai~~l~~~Gi~v~laTgr 47 (266)
T 3pdw_A 5 TYKGYLIDLDGTMYNGTE------KIEEACEFVRTLKDRGVPYLFVTNN 47 (266)
T ss_dssp CCSEEEEECSSSTTCHHH------HHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred cCCEEEEeCcCceEeCCE------eCccHHHHHHHHHHCCCeEEEEeCC
Confidence 468999999999987522 3467788899999999999999874
No 99
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=33.97 E-value=33 Score=32.83 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=35.5
Q ss_pred cccceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 006484 12 KDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (643)
Q Consensus 12 ~~~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGG 61 (643)
++.|.+++=+.|.++.+.. + +....+.|++++++|++++++.|.
T Consensus 6 ~~~kli~~DlDGTLl~~~~--~----~~~~~~ai~~l~~~Gi~v~l~Tgr 49 (268)
T 3qgm_A 6 PDKKGYIIDIDGVIGKSVT--P----IPEGVEGVKKLKELGKKIIFVSNN 49 (268)
T ss_dssp CCCSEEEEECBTTTEETTE--E----CHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccCCEEEEcCcCcEECCCE--e----CcCHHHHHHHHHHcCCeEEEEeCc
Confidence 4578999999999987543 2 346778899999999999999984
No 100
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=33.23 E-value=95 Score=25.12 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=40.5
Q ss_pred cccceeEEEcCccCC----chhHHHHHHHHHHcCCEEe--cCccccccccCCCCccccccccCceEEEEEeCCHHHHHHH
Q 006484 541 CNAMETLLVHKDLAC----NGALNELVVELQHEGVGLF--GGPRASKLLQIPETRLFHHEYNSMVCTVEIVDDVRAAIDH 614 (643)
Q Consensus 541 C~a~~rv~V~~~i~~----~~f~~~l~~~~~~~~~~~~--g~~~~~~~~pv~~~~~~~eE~FgPvl~v~~~~~~deAi~~ 614 (643)
|+..-+++++-++.| +++.+.....+++.|.+++ |+.. .+...+. .|-+.|+.|+|.+.|.++
T Consensus 2 ~M~~~Y~I~~~~v~d~e~y~~Y~~~~~~~~~~~gGr~l~~g~~~----------~~~eG~~-~~~~viieFpS~~aa~~~ 70 (99)
T 2fiu_A 2 HMAKGYWIAQVDVRDSERYKDYVSTAKPAFERFGANFLARGGSV----------TELEGTA-RARNVVIEFPSVQHAIDC 70 (99)
T ss_dssp -CCCEEEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEESCCE----------EEEESCC-CSEEEEEEESSHHHHHHH
T ss_pred CCCcEEEEEEEEeCCHHHHHHHHHHHHHHHHHcCcEEEEECCCc----------eEEecCC-cCeEEEEECCCHHHHHHH
Confidence 344445666655552 3445555556666665543 2210 1111122 347889999999999999
Q ss_pred HHccCC
Q 006484 615 IHQHGS 620 (643)
Q Consensus 615 aN~~~~ 620 (643)
.|+-+|
T Consensus 71 ~~s~~Y 76 (99)
T 2fiu_A 71 YNSPEY 76 (99)
T ss_dssp HHSHHH
T ss_pred HcCHHH
Confidence 998766
No 101
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=33.00 E-value=35 Score=30.68 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=37.5
Q ss_pred hhhcccceEEEEeCCcccccCC-----CccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhhH
Q 006484 9 AFVKDVKRLVVKVGTAVVTRSD-----GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGR 67 (643)
Q Consensus 9 ~~~~~~~~iVIKlGGs~l~~~~-----~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~~ 67 (643)
+.+++.|.++.=+.|..+.... +......-....+.|..|++.|++++|+.|.....-+
T Consensus 3 ~~~~~ik~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~G~~~~i~Tg~~~~~~~ 66 (180)
T 1k1e_A 3 QKLENIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPILR 66 (180)
T ss_dssp -CGGGCCEEEEECTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCCCHHHH
T ss_pred chhhCCeEEEEeCCCCcCCCCeeeccCcceeeeeccchHHHHHHHHHCCCeEEEEeCCCcHHHH
Confidence 3455678999999999986421 1000000023446788888999999999987554433
No 102
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=32.10 E-value=52 Score=31.37 Aligned_cols=46 Identities=15% Similarity=0.395 Sum_probs=34.3
Q ss_pred cccceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 006484 12 KDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (643)
Q Consensus 12 ~~~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGG 61 (643)
+|.|.++.=+-|+.+...+..+. ....+.|.++++.|+++++..|=
T Consensus 10 ~miKli~~DlDGTLl~~~~~~i~----~~~~~al~~l~~~G~~~~iaTGR 55 (268)
T 3r4c_A 10 HMIKVLLLDVDGTLLSFETHKVS----QSSIDALKKVHDSGIKIVIATGR 55 (268)
T ss_dssp SCCCEEEECSBTTTBCTTTCSCC----HHHHHHHHHHHHTTCEEEEECSS
T ss_pred CceEEEEEeCCCCCcCCCCCcCC----HHHHHHHHHHHHCCCEEEEEcCC
Confidence 35688999999999973333344 45677788888999998888643
No 103
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=32.02 E-value=83 Score=23.12 Aligned_cols=35 Identities=3% Similarity=0.088 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHH
Q 006484 299 AARESSRRLQALQSQDRRKILLDVADALEANESLI 333 (643)
Q Consensus 299 ~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i 333 (643)
.++.....|+.+|.++|..+.......-+++..++
T Consensus 29 i~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~ 63 (67)
T 3fgh_A 29 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEM 63 (67)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999877766555554444
No 104
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=31.95 E-value=50 Score=31.44 Aligned_cols=46 Identities=7% Similarity=0.140 Sum_probs=34.1
Q ss_pred hcccceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 006484 11 VKDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (643)
Q Consensus 11 ~~~~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGG 61 (643)
|+|.|.++.=+-|+.+.+.. .+. ....+.|.++++.|++++++.|-
T Consensus 2 M~M~kli~fDlDGTLl~~~~-~i~----~~~~~al~~l~~~G~~~~iaTGR 47 (274)
T 3fzq_A 2 MKLYKLLILDIDGTLRDEVY-GIP----ESAKHAIRLCQKNHCSVVICTGR 47 (274)
T ss_dssp --CCCEEEECSBTTTBBTTT-BCC----HHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCcceEEEEECCCCCCCCCC-cCC----HHHHHHHHHHHHCCCEEEEEeCC
Confidence 44568899999999997643 343 45667778888999998888754
No 105
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=30.98 E-value=29 Score=30.50 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=33.4
Q ss_pred cceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 006484 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (643)
Q Consensus 14 ~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGG 61 (643)
+|.+++=+.|+++.+....+.. ......+.|..+++.|++++|+.|=
T Consensus 3 ~k~i~~DlDGTL~~~~~~~i~~-~~~~~~~al~~l~~~G~~iii~TgR 49 (142)
T 2obb_A 3 AMTIAVDFDGTIVEHRYPRIGE-EIPFAVETLKLLQQEKHRLILWSVR 49 (142)
T ss_dssp CCEEEECCBTTTBCSCTTSCCC-BCTTHHHHHHHHHHTTCEEEECCSC
T ss_pred CeEEEEECcCCCCCCCCccccc-cCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999999999853211110 0135678888999999998888864
No 106
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=30.64 E-value=57 Score=32.12 Aligned_cols=45 Identities=13% Similarity=0.340 Sum_probs=33.8
Q ss_pred cceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCCh
Q 006484 14 VKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGA 62 (643)
Q Consensus 14 ~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg 62 (643)
.|.++.=+-|+.+.+.++.++ ....+.|.+|++.|++++++.|-.
T Consensus 27 ikli~~DlDGTLl~~~~~~is----~~~~~al~~l~~~Gi~v~iaTGR~ 71 (301)
T 2b30_A 27 IKLLLIDFDGTLFVDKDIKVP----SENIDAIKEAIEKGYMVSICTGRS 71 (301)
T ss_dssp CCEEEEETBTTTBCCTTTCSC----HHHHHHHHHHHHHTCEEEEECSSC
T ss_pred ccEEEEECCCCCcCCCCCccC----HHHHHHHHHHHHCCCEEEEEcCCC
Confidence 478999999999986133454 346677888888899998887653
No 107
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=30.06 E-value=61 Score=29.04 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=30.2
Q ss_pred EEeccCCccccCCCC--CCCccceeeeecccchhHHhcCCCCCccCCCchHHHHHHHHHHHcCCcEEEEeCC
Q 006484 193 VLLSDVEGLYSGPPS--EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGF 262 (643)
Q Consensus 193 i~lTdVdGVy~~~P~--~p~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~Kl~aa~~a~~~gv~v~I~~g~ 262 (643)
++++|+||++++.-. .++++.+..++..+- .+.....+.|+++.|++++
T Consensus 11 liv~D~DGtL~d~~~~~~~~g~~~~~f~~~D~---------------------~~L~~Lk~~Gi~~~I~Tg~ 61 (168)
T 3ewi_A 11 LLVCNIDGCLTNGHIYVSGDQKEIISYDVKDA---------------------IGISLLKKSGIEVRLISER 61 (168)
T ss_dssp EEEEECCCCCSCSCCBCCSSCCCEEEEEHHHH---------------------HHHHHHHHTTCEEEEECSS
T ss_pred EEEEeCccceECCcEEEcCCCCEEEEEecCcH---------------------HHHHHHHHCCCEEEEEeCc
Confidence 578999999987431 333434433322111 2344566789998888887
No 108
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=29.61 E-value=64 Score=31.25 Aligned_cols=45 Identities=9% Similarity=0.298 Sum_probs=34.4
Q ss_pred ccceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCCh
Q 006484 13 DVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGA 62 (643)
Q Consensus 13 ~~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg 62 (643)
|.|.++.=+-|+.+.+. +.++ +...+.|.++++.|.+++++.|-.
T Consensus 4 m~kli~~DlDGTLl~~~-~~i~----~~~~~aL~~l~~~Gi~vviaTGR~ 48 (282)
T 1rkq_A 4 AIKLIAIDMDGTLLLPD-HTIS----PAVKNAIAAARARGVNVVLTTGRP 48 (282)
T ss_dssp CCCEEEECCCCCCSCTT-SCCC----HHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cceEEEEeCCCCCCCCC-CcCC----HHHHHHHHHHHHCCCEEEEEcCCC
Confidence 35789999999999764 3454 456677888899999988888653
No 109
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=27.16 E-value=38 Score=29.50 Aligned_cols=59 Identities=17% Similarity=0.071 Sum_probs=38.0
Q ss_pred HhhhcccceEEEEeCCcccccCC-----CccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhHhh
Q 006484 8 RAFVKDVKRLVVKVGTAVVTRSD-----GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVG 66 (643)
Q Consensus 8 ~~~~~~~~~iVIKlGGs~l~~~~-----~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~i~ 66 (643)
++.+++.+.++.=+.|..+.... +...........+.|..|++.|++++|+.|+....-
T Consensus 3 ~~~~~~~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~ 66 (162)
T 2p9j_A 3 RDRVKKLKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKMGITLAVISGRDSAPL 66 (162)
T ss_dssp HHHHHHCCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTTTCEEEEEESCCCHHH
T ss_pred cccccceeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHCCCEEEEEeCCCcHHH
Confidence 34556678999999999986321 000000012345778888889999999998754433
No 110
>3v42_A Folliculin; tumor suppressor, protein binding; 2.00A {Homo sapiens}
Probab=25.64 E-value=83 Score=29.86 Aligned_cols=70 Identities=6% Similarity=0.095 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEeecCcchHhHhhhCCCCccEEEeecCHHHHHHH
Q 006484 418 VQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQI 497 (643)
Q Consensus 418 ~~~~~~AlaaGN~vi~Kps~~tp~t~~~~~~l~~~a~~~alP~g~v~~v~~~~~~~~~l~~~~~v~~i~fTGs~~~g~~i 497 (643)
+..++..+..||=||++.+...-.. -+..++.. -+|.|++++++..++- .+.-..+.+.++.+..+-..+
T Consensus 21 F~~l~~~vl~GnQiIVrg~~~~~~~--s~~~~L~~----lLP~~c~~l~~~s~~Y----~~~~~cnilgls~~v~iP~~v 90 (226)
T 3v42_A 21 FRMLAWHVLMGNQVIWKSRDVDLVQ--SAFEVLRT----MLPVGCVRIIPYSSQY----EEAYRCNFLGLSPHVQIPPHV 90 (226)
T ss_dssp HHHHHHHHHHTCEEEEECSCHHHHH--HHHHHHGG----GSCGGGCCEEEEESSC----CCTTTCSEEEECTTCCCCHHH
T ss_pred HHHHHHHHhcCCEEEEEcCCHHHHH--HHHHHHHH----hCCHHHHhccccchhh----cchhheeeecCCCCcccCccc
Confidence 4567889999999999988643332 23444432 2999999999732221 223467888888876665555
No 111
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*
Probab=25.46 E-value=74 Score=30.32 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=34.6
Q ss_pred ccceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChh
Q 006484 13 DVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAV 63 (643)
Q Consensus 13 ~~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~ 63 (643)
+.|.++.=+-|+.+.+.. .++ +...+.|.++++.|++++++.|-..
T Consensus 3 ~~kli~~DlDGTLl~~~~-~i~----~~~~~~l~~l~~~g~~~~iaTGR~~ 48 (246)
T 3f9r_A 3 KRVLLLFDVDGTLTPPRL-CQT----DEMRALIKRARGAGFCVGTVGGSDF 48 (246)
T ss_dssp CSEEEEECSBTTTBSTTS-CCC----HHHHHHHHHHHHTTCEEEEECSSCH
T ss_pred CceEEEEeCcCCcCCCCC-ccC----HHHHHHHHHHHHCCCEEEEECCCCH
Confidence 357788889999997643 454 4567778889999999888886543
No 112
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.99 E-value=1.2e+02 Score=23.66 Aligned_cols=36 Identities=8% Similarity=0.089 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHH
Q 006484 298 VAARESSRRLQALQSQDRRKILLDVADALEANESLI 333 (643)
Q Consensus 298 ~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i 333 (643)
+.++..-..|+.+|.++|..+.......-+++..++
T Consensus 47 eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~ 82 (86)
T 2eqz_A 47 EFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREM 82 (86)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778999999999999877776666555444
No 113
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=24.51 E-value=1.2e+02 Score=25.41 Aligned_cols=43 Identities=26% Similarity=0.464 Sum_probs=31.5
Q ss_pred ceEEEEeCCcccccCCC-----ccCHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 006484 15 KRLVVKVGTAVVTRSDG-----RLALGRLGALLEQLKELNSQGFEIILVSSG 61 (643)
Q Consensus 15 ~~iVIKlGGs~l~~~~~-----~~~~~~l~~~a~~I~~l~~~g~~vvlVhGG 61 (643)
|.++.=+-|..+.+... .+. ....+.|..+++.|++++++.|-
T Consensus 2 k~i~~DlDGTL~~~~~~~~~~~~~~----~~~~~~l~~l~~~Gi~~~iaTGR 49 (126)
T 1xpj_A 2 KKLIVDLDGTLTQANTSDYRNVLPR----LDVIEQLREYHQLGFEIVISTAR 49 (126)
T ss_dssp CEEEECSTTTTBCCCCSCGGGCCBC----HHHHHHHHHHHHTTCEEEEEECT
T ss_pred CEEEEecCCCCCCCCCCccccCCCC----HHHHHHHHHHHhCCCeEEEEeCC
Confidence 56788889999865432 122 45677788899999999999865
No 114
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=23.65 E-value=67 Score=30.08 Aligned_cols=46 Identities=13% Similarity=0.332 Sum_probs=34.8
Q ss_pred ccceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChh
Q 006484 13 DVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAV 63 (643)
Q Consensus 13 ~~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~ 63 (643)
|.|.++.=+-|+.+.+. +.++ ....+.|.+|++.|++++++.|-..
T Consensus 4 m~kli~~DlDGTLl~~~-~~i~----~~~~~~l~~l~~~g~~~~i~TGr~~ 49 (227)
T 1l6r_A 4 MIRLAAIDVDGNLTDRD-RLIS----TKAIESIRSAEKKGLTVSLLSGNVI 49 (227)
T ss_dssp CCCEEEEEHHHHSBCTT-SCBC----HHHHHHHHHHHHTTCEEEEECSSCH
T ss_pred ceEEEEEECCCCCcCCC-CcCC----HHHHHHHHHHHHCCCEEEEECCCCc
Confidence 35789999999999753 3444 3566778888899999988886544
No 115
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=23.40 E-value=1.1e+02 Score=28.35 Aligned_cols=46 Identities=20% Similarity=0.393 Sum_probs=34.2
Q ss_pred ccceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChh
Q 006484 13 DVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAV 63 (643)
Q Consensus 13 ~~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~ 63 (643)
|.|.++.=+-|+.+.+.. .+. ....+.|.++++.|++++++.|-..
T Consensus 2 m~kli~~DlDGTLl~~~~-~i~----~~~~~al~~l~~~G~~v~i~TGR~~ 47 (231)
T 1wr8_A 2 KIKAISIDIDGTITYPNR-MIH----EKALEAIRRAESLGIPIMLVTGNTV 47 (231)
T ss_dssp CCCEEEEESTTTTBCTTS-CBC----HHHHHHHHHHHHTTCCEEEECSSCH
T ss_pred ceeEEEEECCCCCCCCCC-cCC----HHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 357899999999997543 343 4566677888889999988886543
No 116
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=22.59 E-value=82 Score=28.07 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=18.3
Q ss_pred HHHHHHHcCCcEEEEeCCCcchHHHHH
Q 006484 245 AAYCAACAGIPVVITSGFAMDSIIKVL 271 (643)
Q Consensus 245 aa~~a~~~gv~v~I~~g~~~~~l~~~~ 271 (643)
+.....+.|+++.|++|+....+...+
T Consensus 43 ~l~~L~~~G~~~~i~Tg~~~~~~~~~~ 69 (180)
T 1k1e_A 43 GIKMLMDADIQVAVLSGRDSPILRRRI 69 (180)
T ss_dssp HHHHHHHTTCEEEEEESCCCHHHHHHH
T ss_pred HHHHHHHCCCeEEEEeCCCcHHHHHHH
Confidence 344455689999999988766554444
No 117
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=22.59 E-value=1.1e+02 Score=29.42 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=33.8
Q ss_pred hcccceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 006484 11 VKDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (643)
Q Consensus 11 ~~~~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGG 61 (643)
-++.|.++.=+-|+.+.+.. .+. ....+.|.+++++|++++++.|=
T Consensus 18 ~~~~kli~~DlDGTLl~~~~-~i~----~~~~~al~~l~~~G~~v~iaTGR 63 (285)
T 3pgv_A 18 QGMYQVVASDLDGTLLSPDH-FLT----PYAKETLKLLTARGINFVFATGR 63 (285)
T ss_dssp ---CCEEEEECCCCCSCTTS-CCC----HHHHHHHHHHHTTTCEEEEECSS
T ss_pred cCcceEEEEeCcCCCCCCCC-cCC----HHHHHHHHHHHHCCCEEEEEcCC
Confidence 34568899999999997643 444 45677788888999998888754
No 118
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=22.31 E-value=1.6e+02 Score=23.94 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=31.7
Q ss_pred ceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCChhH
Q 006484 15 KRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVG 64 (643)
Q Consensus 15 ~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg~~ 64 (643)
|.++.-+.|..... ..-...+.+-+..|++.|++++|+.++...
T Consensus 3 k~i~~D~DgtL~~~------~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~ 46 (137)
T 2pr7_A 3 RGLIVDYAGVLDGT------DEDQRRWRNLLAAAKKNGVGTVILSNDPGG 46 (137)
T ss_dssp CEEEECSTTTTSSC------HHHHHHHHHHHHHHHHTTCEEEEEECSCCG
T ss_pred cEEEEeccceecCC------CccCccHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 57788888877221 223456777888899999999999977544
No 119
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=22.20 E-value=1e+02 Score=29.65 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=35.2
Q ss_pred hcccceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCC
Q 006484 11 VKDVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 61 (643)
Q Consensus 11 ~~~~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGG 61 (643)
..+.|.++.=+-|+.+.+....+. +...+.|.++++.|++++++.|-
T Consensus 18 ~~~~kli~~DlDGTLl~~~~~~i~----~~~~~al~~l~~~G~~v~iaTGR 64 (283)
T 3dao_A 18 QGMIKLIATDIDGTLVKDGSLLID----PEYMSVIDRLIDKGIIFVVCSGR 64 (283)
T ss_dssp -CCCCEEEECCBTTTBSTTCSCCC----HHHHHHHHHHHHTTCEEEEECSS
T ss_pred ccCceEEEEeCcCCCCCCCCCcCC----HHHHHHHHHHHHCCCEEEEEcCC
Confidence 456688999999999976432344 56777788888999998888754
No 120
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=21.00 E-value=1.5e+02 Score=24.01 Aligned_cols=37 Identities=8% Similarity=0.066 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 006484 299 AARESSRRLQALQSQDRRKILLDVADALEANESLIKV 335 (643)
Q Consensus 299 ~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~i~~ 335 (643)
.++..-..|+.++.+++..+.......-+++..++..
T Consensus 37 isK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~ 73 (101)
T 1v63_A 37 RMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDL 73 (101)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778999999999999998888877777776654
No 121
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=20.84 E-value=1.2e+02 Score=26.04 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=17.4
Q ss_pred HHHHHHcCCcEEEEeCCCcchHHHHHc
Q 006484 246 AYCAACAGIPVVITSGFAMDSIIKVLE 272 (643)
Q Consensus 246 a~~a~~~gv~v~I~~g~~~~~l~~~~~ 272 (643)
.....+.|+++.|++++....+...+.
T Consensus 45 l~~l~~~g~~~~i~T~~~~~~~~~~l~ 71 (162)
T 2p9j_A 45 IKLLQKMGITLAVISGRDSAPLITRLK 71 (162)
T ss_dssp HHHHHTTTCEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHCCCEEEEEeCCCcHHHHHHHH
Confidence 334455799988888876655544443
No 122
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=20.60 E-value=1.4e+02 Score=22.41 Aligned_cols=30 Identities=3% Similarity=0.147 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Q 006484 300 ARESSRRLQALQSQDRRKILLDVADALEAN 329 (643)
Q Consensus 300 A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~ 329 (643)
++..-..|+.+|.++|..+.......-+++
T Consensus 36 sk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y 65 (76)
T 1hry_A 36 SKQLGYQWKMLTEAEKWPFFQEAQKLQAMH 65 (76)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 455667899999999998876665544444
No 123
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=20.48 E-value=1.2e+02 Score=28.93 Aligned_cols=45 Identities=18% Similarity=0.328 Sum_probs=34.5
Q ss_pred ccceEEEEeCCcccccCCCccCHHHHHHHHHHHHHHHHCCCeEEEEeCCh
Q 006484 13 DVKRLVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGA 62 (643)
Q Consensus 13 ~~~~iVIKlGGs~l~~~~~~~~~~~l~~~a~~I~~l~~~g~~vvlVhGGg 62 (643)
+.|.++.=+-|+.+.+.. .+. ....+.|.++++.|++++++.|-.
T Consensus 4 ~~kli~fDlDGTLl~~~~-~i~----~~~~~al~~l~~~G~~~~iaTGR~ 48 (279)
T 4dw8_A 4 KYKLIVLDLDGTLTNSKK-EIS----SRNRETLIRIQEQGIRLVLASGRP 48 (279)
T ss_dssp CCCEEEECCCCCCSCTTS-CCC----HHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cceEEEEeCCCCCCCCCC-ccC----HHHHHHHHHHHHCCCEEEEEcCCC
Confidence 357899999999997643 444 466777888889999988887543
Done!