Citrus Sinensis ID: 006487

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640---
Protein Sequence
MNMSASSSAPFFEIREDQNQMKQQHSSTPTSSSAPPPVPPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQSGDILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPPQSLASTPFFMQESNQNYHEEQQQHQQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSLSNSNSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNLISDHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSFGGSSSSSGSKPNNNNNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAATNSSIFGTGSNDQVNAFSGQDQNHHRRHHHHHPNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSVSGGFQQREKQQQQHGGVIDVSSLDSERNITAPTSQSFGGGGGGGGGGGSFH
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHccccccccccccHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccHHHccccccccccccEEEEEcHHHHHHcccEEEHHccccccHHHHHHHHccccccccEEEcccccccEEEEEEccccccccccHHHHHHcHHHHHHHHcccccccEEEcccccccEEEEccHHHHHcccccccEEcccccEEcccccHHHHHHHHHHHHHHHcccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccHHHHHHHHHHHHHHccccccccccHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHcccccEEEEcccccccccccccccccccccccccHHHHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
mnmsasssapffeiredqnqmkqqhsstptsssapppvpppqkkkrnqpgtpnpdaevialspktlmATNRFICEVCNKgfqreqnlqlhrrghnlpwklkqktTKEVKrkvylcpeptcvhhdpsralgdltgikkhysrkhgekkwkcekcskryavqsdwkahsktcgtreyrcdcgtlfsrrdsfITHRAFCDALAQEsarhqpslsaigSHLYASTNNMALglsqvgpqlssikdhhqtnqsgdilclggsgsrstpfdhllspsmgsssssfrppqslastpffmqesnQNYHEEQQQHqqgllpnkpppfhglmqfadlqnnpnnsnpvtnsaAAANNLFNLSFlsnssstnslsnsnsnnnnnnaSNLMLsaagghhhhfnnneqngtastgtggvdhhqgtnnnlftnnlisdhqissgavpslfstssvhqnetmvPHMSATALLQKAAQmgstssnnnTASLLRSfggsssssgskpnnnnnnfggagnvfggpgssendnsssihdlmnpfaatnssifgtgsndqvnafsgqdqnhhrrhhhhhpnyeaklhhnmnagmggsdrmtrdFLGVGQIVRSVSGGFQQREKQQqqhggvidvssldsernitaptsqsfgggggggggggsfh
Flexible Loop (DISEMBL)
mnmsasssaPFFEIREDQNQMKQQHsstptsssapppvPPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNlqlhrrghnlpwklkqkttkeVKRKVYLcpeptcvhhdpsralgdlTGIKKHysrkhgekkwkcekcskryavqsdwkahsktcgtreyrcdCGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQSGDILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPPQSLASTPFFMQESNQNYHEEQQQHQQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSLSNSNSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNLISDHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSFGGSSSSSGSKPNNNNNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAATNSSIFGTGSNDQVNAFSGQDQNHHRRHHHHHPNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSVSGGFQQREKQQQQHGGVIDVSSLDSERNItaptsqsfgggggggggggsfh
Low Complexity Region (SEG)
MNMSASSSAPFFEIREDQNQMKQQHsstptsssapppvpppQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQSGDILCLGGSGSRSTPFDHllspsmgsssssfrppqslasTPFFMqesnqnyheeqqqhqqGLLPNKPPPFHGLMQFADLQnnpnnsnpvtnsaaaannlfnlsflsnssstnslsnsnsnnnnnnasnlmlsaagghhhhfnnneqngTASTGTGGVDHHQGTNNNLFTNNLISDHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGstssnnntASLLRsfggsssssgskpnnnnnnfggagnvfggpgssENDNSSSIHDLMNPFAATNSSIFGTGSNDQVNAFSGQDQNhhrrhhhhhPNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSVSggfqqrekqqqqhggVIDVSSLDSERNITAPTSQSFgggggggggggSFH
Disordered region (IsUnstruct)
**********************************************************IALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALA***************HLYA**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FLGVGQIVR*****************************************************
Disordered Region (DISOPRED)
************************************************************LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLP**********VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQE*****************STNNMALG****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************RDFLGVGQ********************************************************
Disordered Region (DISEMBL)
*********PFFEIRED************************************PDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKK************CEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALA*********LSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQSGDILCLGGSGSRSTPFDHLLS**************SLASTPFFMQESNQ************LLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSN************NNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNLISDHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQ**********NNNTASLLRS***********PNNNNNNFGGAGNVFGGP********SSIHDLMNPFAATNSSIFGTGSNDQVNAFS**************PNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSVSG**************VIDVSSLDSERNITAPTSQSFGG************
Disordered Region (DISPRO)
************************************************PGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESAR****************************************************S***PFDHLL*******************************************PNKPPPFHGLMQFADLQNNPNNSNPVTNSA*****LFNLSFLSNSSS*****NSNSNNNNNNASNLMLSA***************************************************************TMVPHMS****LQKAAQMGS**************************************************SSIHDLMNPFAATNSSIFGTGSNDQVNAFSGQDQNHHRRHHHHHPNYEA*********MGGSDRMTRDFLGVGQIVRSVSG*F***********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNMSASSSAPFFEIREDQNQMKQQHSSTPTSSSAPPPVPPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQSGDILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPPQSLASTPFFMQESNQNYHEEQQQHQQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSLSNSNSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNLISDHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSFGGSSSSSGSKPNNNNNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAATNSSIFGTGSNDQVNAFSGQDQNHHRRHHHHHPNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSVSGGFQQREKQQQQHGGVIDVSSLDSERNITAPTSQSFGGGGGGGGGGGSFH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	643	2.2.26 [Sep-21-2011]
Q9ZWA6	506	Zinc finger protein MAGPI	no	no	0.195	0.249	0.844	4e-91
Q700D2	503	Zinc finger protein JACKD	no	no	0.253	0.324	0.859	1e-88
Q9FFH3	466	Zinc finger protein NUTCR	no	no	0.259	0.358	0.838	3e-88
Q9C8N5	499	Protein SENSITIVE TO PROT	no	no	0.216	0.278	0.333	1e-20
Q943I6	522	Zinc finger protein STOP1	no	no	0.214	0.264	0.333	3e-20
Q2QX40	465	Zinc finger protein STAR3	no	no	0.214	0.296	0.326	1e-18
Q8VWG3	303	Protein TRANSPARENT TESTA	no	no	0.216	0.458	0.348	1e-15
O43313	823	ATM interactor OS=Homo sa	yes	no	0.222	0.173	0.331	5e-13
Q6P9S1	818	ATM interactor OS=Mus mus	yes	no	0.185	0.145	0.299	2e-10
Q6ZN06	617	Zinc finger protein 813 O	no	no	0.169	0.176	0.290	2e-06

>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1

 Score =  336 bits (861), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 141/167 (84%), Positives = 159/167 (95%)

Query: 39  PPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPW 98
           PP  KKKRN PG P+P+AEVIALSPKTLMATNRF+CE+C KGFQR+QNLQLHRRGHNLPW
Sbjct: 37  PPLVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPW 96

Query: 99  KLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYA 158
           KLKQ+T+KEV+++VY+CPE +CVHH P+RALGDLTGIKKH+ RKHGEKKWKCEKC+KRYA
Sbjct: 97  KLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYA 156

Query: 159 VQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESAR 205
           VQSDWKAHSKTCGTREYRCDCGT+FSRRDSFITHRAFCDALA+E+AR
Sbjct: 157 VQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAR 203

Probable transcription factor that regulates tissue boundaries and asymmetric cell division. Might be involved in the sequestration of 'SHORT-ROOT' to the nucleus.
Arabidopsis thaliana (taxid: 3702)

>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1

 Score =  328 bits (840), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 141/164 (85%), Positives = 156/164 (95%), Gaps = 1/164 (0%)

Query: 43  KKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQ 102
           KKKRNQPGTP+PDA+VIALSP TLMATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKLKQ
Sbjct: 53  KKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 112

Query: 103 KTTKEV-KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQS 161
           ++ +EV K+KVY+CP  TCVHHD SRALGDLTGIKKHYSRKHGEKKWKCEKCSK+YAVQS
Sbjct: 113 RSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQS 172

Query: 162 DWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESAR 205
           DWKAH+KTCGTREY+CDCGTLFSR+DSFITHRAFCDAL +E AR
Sbjct: 173 DWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGAR 216

Probable transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. Required for radial patterning and stem cell maintenance. Counteracted by 'MAGPIE' (MGP).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1

 Score =  326 bits (836), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 140/167 (83%), Positives = 156/167 (93%)

Query: 39  PPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPW 98
           PP  KKKRN PG P+P+AEVIALSP TLMATNRF+CEVC KGFQR+QNLQLHRRGHNLPW
Sbjct: 33  PPLVKKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPW 92

Query: 99  KLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYA 158
           KLKQ+T+KEV+++VY+CPE TCVHH  SRALGDLTGIKKH+ RKHGEKKW CEKC+KRYA
Sbjct: 93  KLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYA 152

Query: 159 VQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESAR 205
           VQSDWKAHSKTCGTREYRCDCGT+FSRRDSFITHRAFCDALA+E+A+
Sbjct: 153 VQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAK 199

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 14/153 (9%)

Query: 57  EVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKV---- 112
           E++ L  + ++A +   C +C KGF+R+ NL++H RGH   +K      K  K  V    
Sbjct: 229 EILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSE 288

Query: 113 ------YLCPEPTC---VHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC-SKRYAVQSD 162
                 Y CP   C     H   + L  +  +K HY R H +K + C +C +K+++V +D
Sbjct: 289 PMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIAD 348

Query: 163 WKAHSKTCGTREYRCDCGTLFSRRDSFITHRAF 195
            K H K CG  ++ C CGT FSR+D    H A 
Sbjct: 349 LKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIAL 381

Probable transcription factor. Plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1

 Score =  100 bits (250), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 12/150 (8%)

Query: 58  VIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKV----- 112
           V+ L  + ++A +   C +C KGF+R+ NL++H RGH   +K      K  K        
Sbjct: 268 VLQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSLESAP 327

Query: 113 ---YLCPEPTCV---HHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC-SKRYAVQSDWKA 165
              Y CP   C     H   + L  +  +K HY R H +K + C +C +K+++V +D K 
Sbjct: 328 VTRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKT 387

Query: 166 HSKTCGTREYRCDCGTLFSRRDSFITHRAF 195
           H K CG  ++ C CGT FSR+D    H A 
Sbjct: 388 HEKHCGRDKWLCSCGTTFSRKDKLFGHVAL 417

Probable transcription factor that may be involved in aluminum tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QX40|ART1_ORYSJ Zinc finger protein STAR3 OS=Oryza sativa subsp. japonica GN=STAR3 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 15/153 (9%)

Query: 58  VIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWK-----------LKQKTTK 106
           V+ L    ++A +   C +C KGF+R+ NL++H RGH   +K            + +   
Sbjct: 215 VLQLEEDEILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQP 274

Query: 107 EVKRKVYLCPEPTCVH---HDPSRALGDLTGIKKHYSRKHGEKKWKCEKC-SKRYAVQSD 162
               + Y CP   C     H   + L  +  +K HY R H EK+  C +C +KR++V +D
Sbjct: 275 PQPERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMAD 334

Query: 163 WKAHSKTCGTREYRCDCGTLFSRRDSFITHRAF 195
            K H K CG   + C CGT FSR+D    H A 
Sbjct: 335 LKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVAL 367

Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 71/149 (47%), Gaps = 10/149 (6%)

Query: 56  AEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYL- 114
           A  I    + L+    F C VC K F R  NLQ+H  GH   ++   ++ K  + +  L 
Sbjct: 129 AYWIPAPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLG 188

Query: 115 CPEPTCVH-------HDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHS 167
            P   CV        H  S+ L D   ++ HY RKHG K + C  C K  AV+ DW+ H 
Sbjct: 189 IPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHE 248

Query: 168 KTCGTREYRCDCGTLFSRRDSFITH-RAF 195
           K CG R + C CG+ F  + S   H +AF
Sbjct: 249 KNCGKR-WVCVCGSDFKHKRSLKDHVKAF 276

May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat.

Arabidopsis thaliana (taxid: 3702)

>sp|O43313|ATMIN_HUMAN ATM interactor OS=Homo sapiens GN=ATMIN PE=1 SV=2

 Score = 77.0 bits (188), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 48  QPGTPNPDA-EVIALSPKTLMATNR--FICEV--CNKGFQREQNLQLHR-RGHNLPWKLK 101
           QP  P P A E+I  S   L    R   +C V  C K       L +H  + H L   + 
Sbjct: 57  QPAVPAPPAGELIQPSVSELSRAVRTNILCTVRGCGKILPNSPALNMHLVKSHRLQDGIV 116

Query: 102 QKTT-KEVKR--KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYA 158
             T  K++K   K Y CP   C    P R     + +K+H+ + H EKK KC KCS  Y 
Sbjct: 117 NPTIRKDLKTGPKFYCCPIEGC-PRGPERPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYG 175

Query: 159 VQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITH 192
            + D K H++ CG + +RC CG  ++ R +  +H
Sbjct: 176 TEWDLKRHAEDCG-KTFRCTCGCPYASRTALQSH 208

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Homo sapiens (taxid: 9606)

>sp|Q6P9S1|ATMIN_MOUSE ATM interactor OS=Mus musculus GN=Atmin PE=2 SV=2

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 72  FICEV--CNKGFQREQNLQLHR-RGHNLPWKLKQKTTKE---VKRKVYLCPEPTCVHHDP 125
            +C V  C K       L +H  + H L   +   T ++      K Y CP   C    P
Sbjct: 80  ILCTVRGCGKILPNSPALNMHLVKSHRLQDGIVNPTIRKDLTTAPKFYCCPIKGC-PRGP 138

Query: 126 SRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSR 185
            R     + +K+H+ + H EKK KC KCS  Y  + D K H + CG + ++C CG  ++ 
Sbjct: 139 DRPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHEEDCG-KTFQCTCGCPYAS 197

Query: 186 RDSFITH 192
           R +  +H
Sbjct: 198 RTALQSH 204

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Mus musculus (taxid: 10090)

>sp|Q6ZN06|ZN813_HUMAN Zinc finger protein 813 OS=Homo sapiens GN=ZNF813 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 22/131 (16%)

Query: 67  MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS 126
           +   ++ C+VC K F R++NL  HRR H                K Y C E         
Sbjct: 238 LGEKQYKCDVCGKVFNRKRNLVCHRRCH-------------TGEKPYRCNE-------CG 277

Query: 127 RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC-DCGTLFS 184
           +       +  H     GEK +KCE+C K ++ +S+ K H +   G + Y+C +CG  FS
Sbjct: 278 KTFSQTYSLTCHRRLHTGEKPYKCEECDKAFSFKSNLKRHRRIHAGEKPYKCNECGKTFS 337

Query: 185 RRDSFITHRAF 195
           +  S   HR  
Sbjct: 338 QTSSLTCHRRL 348

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	643
225425944	603	PREDICTED: uncharacterized protein LOC10	0.891	0.950	0.617	0.0
255561737	589	nucleic acid binding protein, putative [	0.881	0.962	0.644	0.0
225425946	587	PREDICTED: uncharacterized protein LOC10	0.880	0.964	0.586	1e-163
302398697	601	C2H2L domain class transcription factor	0.895	0.958	0.581	1e-163
449445278	618	PREDICTED: uncharacterized protein LOC10	0.900	0.936	0.556	1e-155
356575478	567	PREDICTED: zinc finger protein MAGPIE-li	0.813	0.922	0.561	1e-153
356523372	533	PREDICTED: zinc finger protein NUTCRACKE	0.786	0.949	0.523	1e-148
255561735	571	zinc finger protein, putative [Ricinus c	0.833	0.938	0.542	1e-148
224108165	530	predicted protein [Populus trichocarpa]	0.794	0.964	0.531	1e-147
356574629	560	PREDICTED: zinc finger protein NUTCRACKE	0.838	0.962	0.503	1e-144

>gi|225425944|ref|XP_002268279.1| PREDICTED: uncharacterized protein LOC100251079 [Vitis vinifera]

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/657 (61%), Positives = 473/657 (71%), Gaps = 84/657 (12%)

Query: 3   MSASSS-APFFEIRED-QNQMKQQHSSTPTSSSAPPPVPPPQKKKRNQPGTPNPDAEVIA 60
           M+ASS+ A  F IRE+ QNQ+KQQHS+ P+SS+AP   P   KKKRNQPGTPNPDAEVIA
Sbjct: 1   MAASSTPAQLFGIREEEQNQVKQQHSAVPSSSNAPAAAP--PKKKRNQPGTPNPDAEVIA 58

Query: 61  LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTC 120
           LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEV+RKVYLCPEP C
Sbjct: 59  LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVRRKVYLCPEPGC 118

Query: 121 VHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCG 180
           VHHDP+RALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCG
Sbjct: 119 VHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCG 178

Query: 181 TLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKD 240
           TLFSRRDSFITHRAFCDALAQESARH   +S IGSHLY S+ NM LGLSQVGPQ+SS+ D
Sbjct: 179 TLFSRRDSFITHRAFCDALAQESARHPTPMSTIGSHLYGSS-NMGLGLSQVGPQISSMPD 237

Query: 241 HHQTNQSGDILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPPQSLASTPFFMQESNQNYHE 300
             Q++Q GD+L LG  G+R+  FDHL+ P++G  SSSFR PQ + S  F++ E NQ +HE
Sbjct: 238 --QSHQPGDMLRLG--GARAGQFDHLIPPAIG--SSSFRTPQPMPSQAFYIPEPNQEFHE 291

Query: 301 EQQQHQQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNS 360
           +QQ    GLL NK  PFHGL+   DLQNN       TN+ ++A NLFNLSF SNSS+TNS
Sbjct: 292 DQQSQHGGLLTNK--PFHGLVHLPDLQNN-------TNNPSSAANLFNLSFFSNSSNTNS 342

Query: 361 LSNSNSNNNNNN---ASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTN 417
           + ++ +N NN+    +S L++S            +Q  T + G+G         NNLF +
Sbjct: 343 MLSNTNNANNSTNMPSSGLLIS------------DQFNTVNGGSG------SERNNLFPS 384

Query: 418 NLISDHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSF 477
           N+I D QISSG VPSLFSTS   QNE  V HMSATALLQKAAQMGSTSS NN+ASLLR F
Sbjct: 385 NIIGD-QISSG-VPSLFSTSL--QNENAVSHMSATALLQKAAQMGSTSS-NNSASLLRGF 439

Query: 478 GGSSSSSG-SKPNNNNNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAATNSSIFGTGSN 536
            GSSS++  S       NFGG   VFG       +N S + DLMN      SS    G +
Sbjct: 440 AGSSSANAKSDRPLVGPNFGG---VFG-------ENESHLQDLMN-SLGGGSSSIFGGGS 488

Query: 537 DQVNAFSGQDQ-------NHHR----------RHHHHHPNY----EAKLHHNMNAGMGGS 575
             VNA+SG +        N +R          + H H PN+    E KLH N+ A MGGS
Sbjct: 489 GGVNAYSGHENENTYGGFNANRSTLEQQQQQQQQHRHGPNFCNIDEIKLHQNLTANMGGS 548

Query: 576 DRMTRDFLGVGQIVRSVSGGFQQREKQQQQHGGVIDVSSLDSERNITAPTSQSFGGG 632
           DR+TRDFLGVGQ+VR++SGGF QR+         I++S+LDSER+ +A TSQ+FGGG
Sbjct: 549 DRLTRDFLGVGQMVRTISGGFSQRDLPPPG----INISTLDSERS-SAQTSQAFGGG 600

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561737|ref|XP_002521878.1| nucleic acid binding protein, putative [Ricinus communis] gi|223538916|gb|EEF40514.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/647 (64%), Positives = 471/647 (72%), Gaps = 80/647 (12%)

Query: 4   SASSSAPFFEIRED-QNQMKQQHSSTPTSSSAPPPVPPPQKKKRNQPGTPNPDAEVIALS 62
           ++SSS PFF IR+D QNQMKQQHSSTPTSSSA    P  QKKKRNQPG PNPDAEVIALS
Sbjct: 3   TSSSSVPFFGIRDDEQNQMKQQHSSTPTSSSAQAQAPAAQKKKRNQPGMPNPDAEVIALS 62

Query: 63  PKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVH 122
           PKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVH
Sbjct: 63  PKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVH 122

Query: 123 HDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTL 182
           HDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTL
Sbjct: 123 HDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTL 182

Query: 183 FSRRDSFITHRAFCDALAQESARHQPS-LSAIGSHLYASTNNMALGLSQVGPQLSSIKDH 241
           FSRRDSFITHRAFCDALAQESAR+ P+ L+ IGSHLY  + NM+LGLSQV  Q+SS++D 
Sbjct: 183 FSRRDSFITHRAFCDALAQESARNPPTNLNTIGSHLYGGS-NMSLGLSQVNTQISSMQD- 240

Query: 242 HQTNQSGDILCLGGSGSRSTPFDHLLSPSMGSSSSSFR--PPQSLASTPFFMQESNQNYH 299
               QS DIL LGG GSR+  FDHLL  SMG  S SFR  PPQ + S  FFMQE NQNYH
Sbjct: 241 ----QSSDILRLGG-GSRTGQFDHLLPSSMG-GSVSFRPSPPQPMPSPAFFMQEPNQNYH 294

Query: 300 EEQQQHQQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTN 359
           +E Q  QQGLL NK P  HGLMQFA+L N  N + P       A+N+FNLSFLSNSS+T+
Sbjct: 295 DEHQA-QQGLLQNK-PFHHGLMQFAELHNTTNTNPP-------ASNIFNLSFLSNSSTTS 345

Query: 360 SLSNSNSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNL 419
             S +NSNN NN+ ++L++S      + F+N  QNG +  G G         + +F+N++
Sbjct: 346 --SITNSNNANNSNNSLLMS------NQFSN--QNGASGGGDG---------STMFSNHI 386

Query: 420 ISDHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSFGG 479
           + DH   +  VPSLF TSSV ++ T VPHMSATALLQKAAQMGSTSS   T S       
Sbjct: 387 MGDHHQMNSGVPSLF-TSSVQKDNT-VPHMSATALLQKAAQMGSTSS---TYSASLLRSF 441

Query: 480 SSSSSGSKPNNNNNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAAT-NSSIFGTGSNDQ 538
            SSSS +   +   NF   G +F     SEND  +++HDLMN FAAT NSSIFG G  + 
Sbjct: 442 GSSSSSTGMKSAAANF---GEIF-----SENDQ-NNLHDLMNSFAATGNSSIFGHGQENP 492

Query: 539 VNAFSGQDQNHHRRHHHHHPNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSVSGGFQQ 598
                G  +             EAK+H  +NA +GGSDR+TRDFLGVGQ+VRS+SGGF Q
Sbjct: 493 YGTSGGNLE-------------EAKMHQGLNASIGGSDRLTRDFLGVGQVVRSMSGGFSQ 539

Query: 599 REKQQQQHGGV-----IDV--SSLDSERNI-----TAPTSQSFGGGG 633
           REKQ+Q          ID+  SSLDSERNI      APTSQSFGG G
Sbjct: 540 REKQRQPPQQQQQQQGIDMGGSSLDSERNIAAAAAAAPTSQSFGGSG 586

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425946|ref|XP_002273614.1| PREDICTED: uncharacterized protein LOC100257993 [Vitis vinifera]

 Score =  582 bits (1501), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 375/639 (58%), Positives = 449/639 (70%), Gaps = 73/639 (11%)

Query: 6   SSSAPFFEIRED-QNQMKQQHSSTPTSSSAPPPVPPPQKKKRNQPGTPNPDAEVIALSPK 64
           SSSAPFF  RE+ Q QM QQ SSTPTSS+AP    P QK+KRN PGTPNPDAEVIALSPK
Sbjct: 5   SSSAPFFGTREEEQTQMIQQQSSTPTSSTAPTAAAP-QKRKRNLPGTPNPDAEVIALSPK 63

Query: 65  TLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHD 124
           TLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKL+QKTTKEV+RKVYLCPEPTCVHHD
Sbjct: 64  TLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLRQKTTKEVRRKVYLCPEPTCVHHD 123

Query: 125 PSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFS 184
           PSRALGDLTGIKKHYSRKHGEKKWKC+KCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFS
Sbjct: 124 PSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFS 183

Query: 185 RRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQT 244
           RRDSFITHRAFCDALAQESAR+ PSL+ +G HLY  T+ M LGLSQVG Q++S+  H Q 
Sbjct: 184 RRDSFITHRAFCDALAQESARNPPSLTNMGGHLYG-TSQMTLGLSQVGSQIASL--HDQN 240

Query: 245 NQSGDILCLGGSGSRSTPFDHLLSPSMGSSSSSF-RPPQSLASTPFFMQESNQNYHEEQQ 303
           + S +IL L  +G+    ++HLL PS    + SF +PPQ + S+ F+M +SNQ Y E Q 
Sbjct: 241 HPSSNILRLDSAGA--AKYEHLLPPS----NPSFGKPPQPMPSSAFYMPDSNQGYQEHQS 294

Query: 304 QHQQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSLSN 363
            H   LL NKP  FHGLMQF D Q N NNS       +AA NLFNL F  N+S+++S+SN
Sbjct: 295 HHT--LLGNKP--FHGLMQFPDHQGNANNS------PSAAANLFNLGFFPNNSTSSSISN 344

Query: 364 SNSNNNNNNASNLMLSAAGGHHHHFNNNEQ--NGTASTGTGGVDHHQGTNNNLFTNNLIS 421
           SN+ NN+       L  +G     F + +Q  NG AS          G    LF++++ S
Sbjct: 345 SNNANNSTT-----LPPSG-----FLSPDQFNNGNAS----------GQGTTLFSSSM-S 383

Query: 422 DHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSFGGSS 481
           DH + SG + SL+STS   Q E++ PHMSATALLQKAAQMG T+S+N ++SLLR  GGSS
Sbjct: 384 DH-VGSG-LSSLYSTS--MQQESLAPHMSATALLQKAAQMGPTTSSN-SSSLLRGLGGSS 438

Query: 482 SSSGSKPNNN--NNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAATNSSIFGTGSNDQV 539
           S+ G+K +    ++NF            S+ +N + +  LMN  A  NSSIFG   + Q 
Sbjct: 439 ST-GAKSDRQLLSSNFSSL--------RSQMENENHLQGLMNSLANGNSSIFGGSGHAQE 489

Query: 540 NAFSGQD-QNHHRRHHHHHPNY----EAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSVSG 594
           N F G + +       H + N+    +AKLH ++   MGG DR+T DFLGVG +VR+V G
Sbjct: 490 NNFGGFNGRGITLEQQHKNTNFSKVDDAKLHQSLGVSMGGPDRLTLDFLGVGGVVRNVGG 549

Query: 595 GFQQREKQQQQHGGVIDVSSLDSERNITAPT--SQSFGG 631
           GF QRE   Q+H  V+++SSLDSE    A    S+ FGG
Sbjct: 550 GFSQRE---QRH--VVEMSSLDSEIKTAAAAQGSRPFGG 583

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398697|gb|ADL36643.1| C2H2L domain class transcription factor [Malus x domestica]

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 381/655 (58%), Positives = 445/655 (67%), Gaps = 79/655 (12%)

Query: 1   MNMSASSSAPFFEIRE-DQNQ-MKQQHSSTPTSSSAPPPVPPPQKKKRNQPGTPNPDAEV 58
           M  S+SS AP F IRE DQNQ M+QQHSST  +SS   P  PPQKK+RNQPGTPNP+AEV
Sbjct: 1   MAASSSSGAPLFGIREEDQNQKMRQQHSSTTPTSSTAAPAAPPQKKRRNQPGTPNPEAEV 60

Query: 59  IALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP 118
           +ALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKE KRKVYLCPEP
Sbjct: 61  VALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEP 120

Query: 119 TCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD 178
           TCVHHDPSRALGDLTGIKKHY RKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD
Sbjct: 121 TCVHHDPSRALGDLTGIKKHYFRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD 180

Query: 179 CGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYA--STNNMALGLSQ--VGP- 233
           CGTLFSRRDSFITHRAFCDALAQESARH PSL+ IGS LY   S +N  LGLS   VGP 
Sbjct: 181 CGTLFSRRDSFITHRAFCDALAQESARHPPSLTTIGSSLYGGGSLSNTGLGLSHQVVGPP 240

Query: 234 -QLSSIKDHHQTNQSGDILCLGGS-----GSRSTPFDHLLS-PSMGSSSSSFRPPQSLAS 286
            QLSS+ DH  +NQ  DIL LGGS       R+  FDHLLS PSMGSS   FR  QS A+
Sbjct: 241 HQLSSL-DH--SNQPSDILRLGGSSGAAAADRAGQFDHLLSSPSMGSS---FRLAQSSAA 294

Query: 287 TPFFMQESNQNYHEEQQQHQQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNL 346
           + F    S+ +   +QQ H Q         FHGLMQF        + +P  + + A  NL
Sbjct: 295 SFFMTGASDHDQSNQQQYHDQ------DKSFHGLMQF-------THHSPHQHHSGAGTNL 341

Query: 347 FNLSFLSNSSSTNSLSNSNSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDH 406
           FN+ F+SNS+++NS SNS+S  + N               HFN N  NG+AS G   V  
Sbjct: 342 FNVPFVSNSTNSNSASNSHSLISPN---------------HFNTNA-NGSASGGGNEV-- 383

Query: 407 HQGTNNNLFTNNLISDHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSS 466
               +NNLF  +++      S  VPSL+S +   Q + +  HMSATALLQKAAQMGS +S
Sbjct: 384 ----SNNLFAGHIMGGGDHMSSGVPSLYSNNGNSQQQAISSHMSATALLQKAAQMGSNTS 439

Query: 467 NNNTAS-LLRSFGGSSSSSGSKPNNNNNNF-GGAGNVFGGPGSSENDNSSSIHDLMNPFA 524
           NNN  + LLRSFG SSS++ +KP+          G +FG    S+  + S + DLMN FA
Sbjct: 440 NNNNTTSLLRSFGSSSSTT-TKPDRPGTLVPSSLGRMFG----SDQTDQSHLQDLMNSFA 494

Query: 525 ATNSS--IFGTGSNDQVNAFSGQDQNHHRRHHHHHPNYEAKL--HHNMNAGMGGSDRMTR 580
           +      IFG  +  + +A + +  N            +AKL  H  +N   GGSDR+TR
Sbjct: 495 SGGGGSSIFGNAAFGRYDASANRAINME----------DAKLQQHIGLNNIGGGSDRLTR 544

Query: 581 DFLGVGQIVRSVSGGFQQREKQQQQHGGVIDVSSLDSERN--ITAPTSQSFGGGG 633
           DFLGVGQ+VRS+SGGF   ++ +QQHGG+  +SSLDSE N    AP++QSFGGGG
Sbjct: 545 DFLGVGQVVRSMSGGFSH-QRSEQQHGGMEMLSSLDSESNGAAAAPSTQSFGGGG 598

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445278|ref|XP_004140400.1| PREDICTED: uncharacterized protein LOC101219959 [Cucumis sativus] gi|449487889|ref|XP_004157851.1| PREDICTED: uncharacterized protein LOC101227194 [Cucumis sativus]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 370/665 (55%), Positives = 447/665 (67%), Gaps = 86/665 (12%)

Query: 4   SASSSAPFFEIREDQNQMK--------QQHSSTPTSSSAPPPVPPPQKKKRNQPGTPNPD 55
           ++SSS P F +RE+  QM+            S P++SS   P PPPQKKKRNQPGTPNPD
Sbjct: 3   ASSSSVPLFGVREE-GQMRGQQPPQPQPPPPSAPSNSSTALPTPPPQKKKRNQPGTPNPD 61

Query: 56  AEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLC 115
           AEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQK+TKE KRKVYLC
Sbjct: 62  AEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLC 121

Query: 116 PEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREY 175
           PEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKC+KCSKRYAVQSDWKAHSKTCGTREY
Sbjct: 122 PEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREY 181

Query: 176 RCDCGTLFSRRDSFITHRAFCDALAQESARHQPSL-SAIGSHLYASTNNMALGLSQVGPQ 234
           RCDCGTLFSRRDSFITHRAFCDALAQESARH P+L +AIGSHLY   +N+ L LSQV PQ
Sbjct: 182 RCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGTAIGSHLYGGNSNVGLTLSQV-PQ 240

Query: 235 LSSIKDHHQTNQSG-DILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPP--QSLAST--PF 289
           +SS++DH    QS  D+L LG  G R+  F HLL PS+G   SSFRPP  Q++ S+   F
Sbjct: 241 MSSLQDHSNITQSPHDVLRLG--GGRTGQFTHLLPPSIG---SSFRPPPQQAMPSSNAAF 295

Query: 290 F--MQESNQN-YHEE--QQQHQQGLLPNKPPPFHGLMQF-ADLQNNPNNSNPVTNSAAAA 343
           F    ++NQN +HE+  Q Q QQGL  NK  PFHGLMQF +D+Q +        N+  +A
Sbjct: 296 FGLSDQTNQNSFHEDHHQSQSQQGLFGNK--PFHGLMQFPSDIQTH------ANNNNNSA 347

Query: 344 NNLFNLSFLSNSSSTNSLSNSNSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGG 403
           +NLFNLSF+SN +  N+ + +N+N+ N N SN   +         NN   +         
Sbjct: 348 SNLFNLSFISNPTGDNTSNMNNNNDTNTNNSNSSSNNN-------NNLPSSLLNQFNGTN 400

Query: 404 VDHHQGTNNNLFTNNLISDHQISSGAVPSLFSTSS------VHQNETMVPHMSATALLQK 457
             ++ G  +N+F  N++ D QI+S AVPSL+S ++             +PHMSATALLQK
Sbjct: 401 NGNNDGPASNIFAVNIMGD-QINSAAVPSLYSNTAPGGCSSGTSGGGAIPHMSATALLQK 459

Query: 458 AAQMG-STSSNNNTASLLRSFGGSSSSSGSKPNNNNNNFGGAGNVFGGPGSSENDNSSSI 516
           AAQ+G +TSS+N TA+LLR+FG SS+SSG   +         G VFG       +N S++
Sbjct: 460 AAQLGSTTSSSNTTATLLRTFGSSSTSSGKASDRTLFPPSYGGVVFG-------ENESNL 512

Query: 517 HDLMNPFAATNSSIFGTGSNDQVNAFSGQDQNHHRRHHHHHPNYEAKLHHNMNAGM--GG 574
            DLMN FA  +S   G+G        S +D                KL  N++     GG
Sbjct: 513 QDLMNSFANASS---GSGMFGSFGVESLED--------------PTKLQQNLSTVSMGGG 555

Query: 575 SDRMTRDFLGVGQIVRSVS-----GGFQQREKQQQQHGGVIDVSSLDSERNITAPTSQSF 629
           +DR+TRDFLGVGQIVRS+S     GG+ QRE +Q   G V++     +E N TAP+S +F
Sbjct: 556 TDRLTRDFLGVGQIVRSMSGGGGGGGYTQREHKQGGQGIVME----GNESN-TAPSSNAF 610

Query: 630 GGGGG 634
           GGG G
Sbjct: 611 GGGNG 615

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575478|ref|XP_003555867.1| PREDICTED: zinc finger protein MAGPIE-like [Glycine max]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 348/620 (56%), Positives = 404/620 (65%), Gaps = 97/620 (15%)

Query: 11  FFEIRE-DQNQMKQQHSSTPTSSSAPPPVPPPQKKKRNQPGTPNPDAEVIALSPKTLMAT 69
            F  RE DQNQMKQQHS TP+SS+ P   PPPQKKKRNQPGTP PDAEVIALSPKTLMAT
Sbjct: 10  LFGFREEDQNQMKQQHSLTPSSSTTPA-APPPQKKKRNQPGTPYPDAEVIALSPKTLMAT 68

Query: 70  NRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRAL 129
           NRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKE KRKVYLCPEPTCVHHDPSRAL
Sbjct: 69  NRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRAL 128

Query: 130 GDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSF 189
           GDLTGIKKHYSRKHGEKKWKC+KCSK+YAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSF
Sbjct: 129 GDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSF 188

Query: 190 ITHRAFCDALAQESARHQPSLSA--IGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQS 247
           ITHRAFCDALAQESAR  PSLS   IGSHLY ST NMAL LSQVG Q+S+++D +   Q 
Sbjct: 189 ITHRAFCDALAQESARQPPSLSGGGIGSHLYGSTTNMALNLSQVGSQISTMQDPNA--QP 246

Query: 248 GDILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPP-QSLASTPFFMQ-ESNQNYHEEQQQH 305
            ++L LG +  R+  FDH+L        S FRP  Q     PFFM  E NQ YH      
Sbjct: 247 TELLRLGAASGRTGQFDHILG-------SPFRPSNQQQQQQPFFMSSEPNQTYHH----- 294

Query: 306 QQGLLPNKPPPFH-GLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSLSNS 364
                P++  PF  GLMQ +D          + N++   N+ F+L FLSN++S  S S  
Sbjct: 295 -----PDQNKPFQQGLMQLSD---------HLNNNSHHNNSPFSLPFLSNNTSNASFS-- 338

Query: 365 NSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNLISDHQ 424
                                 HFNN    G  +                  NN    + 
Sbjct: 339 ---------------------EHFNNANGGGGNNNNN---------------NNNEGTNY 362

Query: 425 ISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSFGGSSSSS 484
            ++ + PSLFS S    N + + HMSATALLQKAAQMG+T+SN  TASLL+SFG +SSSS
Sbjct: 363 FATSSAPSLFSNSV---NASALSHMSATALLQKAAQMGATTSNGGTASLLKSFGSASSSS 419

Query: 485 GSKPNNNNNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAAT-NSSIFGTGSNDQVNAFS 543
           G   +   N       +FGG       ++S++ DLMN FA   NSSIF     D   A+ 
Sbjct: 420 GGGGSKLVNAANYVSGMFGGNNHVNEQSNSNLQDLMNSFAVGGNSSIF----EDGFEAY- 474

Query: 544 GQDQNHHRRHHHHHPNYEAKLH--HNMNAGMGGSDRMTRDFLGVGQIVRSVSG--GFQQR 599
                    H +++ N + K+H     ++ +GGSDR+TRDFLGVGQIVR +SG  G  QR
Sbjct: 475 --------EHSNNNSNRDPKVHAMSGSSSSIGGSDRLTRDFLGVGQIVRGMSGSGGVAQR 526

Query: 600 EKQQQQHGGVIDVSSLDSER 619
           E QQQQHG   ++SSL++ER
Sbjct: 527 E-QQQQHG--FNLSSLEAER 543

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523372|ref|XP_003530314.1| PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max]

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 338/646 (52%), Positives = 397/646 (61%), Gaps = 140/646 (21%)

Query: 7   SSAPFFEIRE-DQNQMKQQHSSTPTSSSAPPPVPPPQKKKRNQPGTPNPDAEVIALSPKT 65
           S+A  F IRE DQNQMKQQ  S+ T SS+  P  PPQKK+RNQPGTP PDAEVIALSPKT
Sbjct: 6   SAASLFAIREEDQNQMKQQQHSS-TPSSSTTPAAPPQKKRRNQPGTPYPDAEVIALSPKT 64

Query: 66  LMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDP 125
           LMATNRF+CEVCNKGFQREQNLQLHRRGHNLPWKLKQKT KE KRKVYLCPEPTCVHHDP
Sbjct: 65  LMATNRFLCEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDP 124

Query: 126 SRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSR 185
           SRALGDLTGIKKHYSRKHGEKKWKC+KCSK+YAVQSDWKAHSKTCGTREYRCDCGTLFSR
Sbjct: 125 SRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSR 184

Query: 186 RDSFITHRAFCDALAQESARHQPS--LSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQ 243
           RDSFITHRAFCDALAQESAR QP    SAI + LY ++NN++LGLSQ+GPQ+ SI  H Q
Sbjct: 185 RDSFITHRAFCDALAQESARDQPPNLSSAISNQLYGNSNNISLGLSQMGPQIPSI--HDQ 242

Query: 244 TNQSGDILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPPQSLASTPFFMQESNQNYHEEQQ 303
            +QS D+L  GG+  R+  FDH+L P++ +SSS FRP  S+ + PFFMQE NQ YH+  +
Sbjct: 243 NHQSSDLLHFGGA-PRTGQFDHILPPNI-ASSSPFRP--SMQTPPFFMQEPNQTYHDSNK 298

Query: 304 QHQQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSLSN 363
                       PF GL+Q +DL N         N+A + +N FNL FLSN +       
Sbjct: 299 ------------PFQGLIQLSDLNN---------NNAPSGSNFFNLPFLSNRA------- 330

Query: 364 SNSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNLISDH 423
               N NNN S             FN  E++   S  T                N+ +DH
Sbjct: 331 ----NKNNNYSE--------EQQQFNTAEESNFFSESTM---------------NIGTDH 363

Query: 424 QI-SSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNN-------------N 469
           Q  S+   PSLFST+S+    T + HMSATALLQKAAQMGSTSS+N             +
Sbjct: 364 QANSTTTAPSLFSTNSLQ--NTNISHMSATALLQKAAQMGSTSSSNHNIINNNTTNNNPS 421

Query: 470 TASLLRSFGGSSSSSGSKPNNNNNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAATNSS 529
            +S+LRS    S                   + GG G+     ++S+ ++M+        
Sbjct: 422 ASSILRSLASKSDQR---------------QLGGGAGNYATIFNNSVQEMMD-------- 458

Query: 530 IFGTGSNDQVNAFSGQDQNHHRRHHHHHPNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIV 589
                    ++ F   D       HH   N E KL      G+GGSDR+TRDFLGV Q  
Sbjct: 459 ---------ISGFEAYD-------HHGGMNKEQKL------GVGGSDRLTRDFLGVAQQQ 496

Query: 590 RSVSGGFQQREKQQQQHGGVIDVSSLDSE--RNITAPTSQSFGGGG 633
           +        RE       G   VSSL+SE   N  AP+ QSFG  G
Sbjct: 497 QQQQ-----RE-------GFNLVSSLESETNNNNAAPSGQSFGSDG 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561735|ref|XP_002521877.1| zinc finger protein, putative [Ricinus communis] gi|223538915|gb|EEF40513.1| zinc finger protein, putative [Ricinus communis]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 346/638 (54%), Positives = 423/638 (66%), Gaps = 102/638 (15%)

Query: 4   SASSSAPFFEIRED-QNQMKQQHSSTPTSSSAPPPVPPPQKKKRNQPGTP---------N 53
           +ASSS+PFF  RE+  NQM QQ+SST T++S+  P   PQKKKRNQPGTP         +
Sbjct: 3   AASSSSPFFRAREENHNQMMQQNSST-TTTSSTAPATAPQKKKRNQPGTPCNFWHFPFAD 61

Query: 54  PDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVY 113
           PDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVY
Sbjct: 62  PDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVY 121

Query: 114 LCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTR 173
           LCPEPTCVHHD SRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTR
Sbjct: 122 LCPEPTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTR 181

Query: 174 EYRCDCGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGP 233
           EYRCDCGTLFSRRDSFITHRAFCDALAQESARH   L+ IGSHLY + N+M+LGLSQVG 
Sbjct: 182 EYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTGLNTIGSHLYGN-NHMSLGLSQVGS 240

Query: 234 QLSSIKDHHQTNQSGDILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPPQSLASTPFFMQE 293
            +SS++D  Q + S ++L LG +G  +  F+H++ PS  +S        ++ ++ FFM +
Sbjct: 241 PISSLQD--QNHSSSNLLRLGSAG--AAKFEHIIPPSNSTSLP------TMPASAFFMSD 290

Query: 294 SNQNYHEEQQQHQQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLS 353
           +N           QG   NK  P HGLMQ  DLQ+        TN+++ A NLFNLSF S
Sbjct: 291 AN-----------QGSFSNK--PLHGLMQLPDLQS-------ATNNSSVATNLFNLSFFS 330

Query: 354 NSSSTNSLSNSNSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNN 413
           N+S  N +SNS++ N++  A+NL+ S         + N  NG    G GG    QG+   
Sbjct: 331 NNSPGNRISNSDNGNSSTAATNLVNSG------FLSPNPFNG----GNGG----QGS--T 374

Query: 414 LFTNNLISDHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASL 473
           +F NN+     + SG +PSL+S S   Q E + PHMSATALLQKAAQMGST+S+NN ++L
Sbjct: 375 IFANNM--GDPVGSG-IPSLYSNS--MQQENITPHMSATALLQKAAQMGSTTSSNNNSTL 429

Query: 474 LRSFGGSSSSSGSKPNNN---NNNFGGA-GNV---------FGGPGSSENDNSSSIHDLM 520
           LR   GSSSS+G+K + +   + NFG + GN           G    SEN     +  LM
Sbjct: 430 LRGL-GSSSSTGNKSDRSPLVSANFGSSFGNAKIGDHHHQGLGTQIESENQ----LQGLM 484

Query: 521 NPFAATNSSIFGTGSNDQVNAFSGQDQNHHRRHHHHHPNYEAKLHHNMNAGMGGSDRMTR 580
           N  A   SSIFG G + Q N F G   +       H+    + +          ++++T 
Sbjct: 485 NSLANGGSSIFG-GGHGQDNGFGGFTSSGISLEQPHNSTSFSNVDE--------ANKLTL 535

Query: 581 DFLGVGQIVRSVSGGFQQREKQQQQHGGVIDVSSLDSE 618
           DFLGVG +VR++ G          QHG  I++S+LD+E
Sbjct: 536 DFLGVGGMVRNIGG----------QHG--INLSALDTE 561

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108165|ref|XP_002314745.1| predicted protein [Populus trichocarpa] gi|222863785|gb|EEF00916.1| predicted protein [Populus trichocarpa]

 Score =  530 bits (1365), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 324/610 (53%), Positives = 400/610 (65%), Gaps = 99/610 (16%)

Query: 4   SASSSAPFF-EIRED-QNQMKQQHSSTPTSSSAPPPVPPPQKKKRNQPGTPNPDAEVIAL 61
           +ASSSAPFF   RE+ QNQ+ QQHSST TSS+ P     PQKK+RNQPGTP+        
Sbjct: 3   AASSSAPFFGRAREEHQNQIIQQHSSTATSSTVP--TTGPQKKRRNQPGTPS-------- 52

Query: 62  SPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCV 121
                    +FICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCV
Sbjct: 53  ---------KFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCV 103

Query: 122 HHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGT 181
           HHDPSRALGDLTGIKKHY RKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGT
Sbjct: 104 HHDPSRALGDLTGIKKHYFRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGT 163

Query: 182 LFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDH 241
           LFSRRDSFITHRAFCDALAQESARH  SL+ IGSHLY + N+M+LG SQVG Q+S ++DH
Sbjct: 164 LFSRRDSFITHRAFCDALAQESARHPTSLNTIGSHLYGN-NHMSLGFSQVGSQISHLQDH 222

Query: 242 HQTNQSGDILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPPQSLASTPFFMQESNQNYHEE 301
           H +    ++L LG +G+ +  F+HL+ P    S         +  + FFM ++N      
Sbjct: 223 HPSGN--NMLRLGSAGAAN--FEHLIPPPNPPSMP------MMPPSGFFMGDAN------ 266

Query: 302 QQQHQQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSL 361
                QG  PNK    HGLMQ  DLQ+N       TN+ ++A+NLFN  F SN+S+T   
Sbjct: 267 -----QGPFPNK--SLHGLMQLPDLQSN-------TNNPSSASNLFNFGFFSNNSNTGRT 312

Query: 362 SNSNSNNNNNNASNL----MLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTN 417
           SN+++ N  +  +NL    +L+A       FNN   NG             G   ++F  
Sbjct: 313 SNNDNANTGSTTTNLASPGLLNAT-----QFNN--VNGA------------GQRTSVFPT 353

Query: 418 NLISDHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSF 477
           N+  DH  S  A+ S F+TS   Q E + PH+SATALLQKAAQMGST+S+N+ + LLRS 
Sbjct: 354 NMSGDHVGS--AMSSFFNTS--MQQENITPHVSATALLQKAAQMGSTTSSNSPSGLLRSL 409

Query: 478 GGSSSSSGSKPNN--NNNNFGGA---GNVFGGPGSSENDNSSSIHDLMNPFAATNSSIFG 532
            GSSS++G+K      + NFG +    NV G    +  ++ S +  LMN  A  +SSIFG
Sbjct: 410 -GSSSTTGAKSIRPLVSTNFGSSFSNANV-GESLETHMESESQLQGLMNSLANGSSSIFG 467

Query: 533 TGSNDQVNAFSGQDQNHHRRHHHHHPNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSV 592
              N+Q N+++G D +          ++      NM+ G+ GSD++T DFLGVG  VR++
Sbjct: 468 ---NEQDNSYTGFDSS----------SFSKADEGNMHQGLAGSDKLTLDFLGVGGRVRNI 514

Query: 593 SGGFQQREKQ 602
            GGF QR++Q
Sbjct: 515 GGGFPQRQQQ 524

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574629|ref|XP_003555448.1| PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max]

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 317/630 (50%), Positives = 391/630 (62%), Gaps = 91/630 (14%)

Query: 4   SASSSAPFFEIREDQNQMKQQHSSTPTSSSAPPPVPPPQKKKRNQPGTPNPDAEVIALSP 63
           +ASSS PF  IRE+  Q+   H  +  S     P   PQKK+RNQPGTP PDAEVI LSP
Sbjct: 3   AASSSTPFLGIREESPQITTHHQPSTVS-----PTTAPQKKRRNQPGTPYPDAEVIKLSP 57

Query: 64  KTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQK-TTKEVKRKVYLCPEPTCVH 122
           KTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQK TTKE KRKVYLCPEPTCVH
Sbjct: 58  KTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTTKEPKRKVYLCPEPTCVH 117

Query: 123 HDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTL 182
           HDPSRALGDLTGIKKHY RKHGEKKWKCEKCSK+YAVQSDWKAHSKTCGTREYRCDCGTL
Sbjct: 118 HDPSRALGDLTGIKKHYYRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTL 177

Query: 183 FSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHH 242
           FSRRDSFITHRAFCDALAQESAR    L+++G+HL+ + +  +L LSQVG QLS ++  +
Sbjct: 178 FSRRDSFITHRAFCDALAQESARFPSGLNSLGTHLFGTNHTTSLSLSQVGNQLSQVQKQN 237

Query: 243 QTNQSGDILCLGGS-GSRSTPFDHLLSPSMGSSSSSF-RPPQSLASTPFFM-QESNQNYH 299
           QT  +  I  LG + G+ +T F+HL+ P    + SSF   PQS+ S+ FFM   +NQ+  
Sbjct: 238 QTATTNSIFLLGNNVGAAATKFEHLIPP---LNQSSFGHSPQSMPSSAFFMNNNTNQSLF 294

Query: 300 EEQQQHQQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTN 359
           EE       L   K     GLMQ  DLQ N NNS+  + +A   +NLFNLSF  +S+   
Sbjct: 295 EEHHSQHGPLFSTK--QLQGLMQLQDLQGNTNNSDSSSVAAPNNSNLFNLSFFPSSN--- 349

Query: 360 SLSNSNSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNL 419
                             +S        FNN            G D    T   L+ N++
Sbjct: 350 ------------------ISTGTIIPDQFNN----------ISGGDQGTTTTTTLYGNSI 381

Query: 420 ISDHQISSGAVPSLFSTSSVHQNETM-VPHMSATALLQKAAQMGS-TSSNNNTASLLRSF 477
                +SS  V S FS+   +  E +  PHMSATALLQ+AAQMGS T++  N +SLLR  
Sbjct: 382 ---ENVSSPHVGSSFSSIFGNSMENVSSPHMSATALLQQAAQMGSTTTTTTNCSSLLR-- 436

Query: 478 GGSSSSSGSKPNNNNNNFGGAGNVFGGPGSSENDNSSSIHDLMNPFAATNSSIFGT--GS 535
            G  +++G K                    +END+  ++  LMN  A  N+S+FG+  G+
Sbjct: 437 -GMCTNNGCK--------------------AENDHHHNLQGLMNSIANGNTSLFGSMQGN 475

Query: 536 NDQVNAFSGQDQNHHRRHHHHHPNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSV-SG 594
            + +  F   D++++            KL  N++   GGSD++T DFLGVG ++R++ SG
Sbjct: 476 ENNLCGFHNVDESNN------------KLPQNLSVNFGGSDKLTLDFLGVGGMMRNMSSG 523

Query: 595 GFQQREKQQQQHGGVIDVSSLDSERNITAP 624
           GF QRE+QQ   G    +SSLD +     P
Sbjct: 524 GFSQREQQQHDIG---TMSSLDHDLKSAQP 550

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	643
TAIR|locus:2051698	602	IDD5 "AT2G02070" [Arabidopsis	0.388	0.415	0.693	2.2e-115
TAIR|locus:2051688	516	IDD4 "indeterminate(ID)-domain	0.304	0.379	0.792	5.3e-98
TAIR|locus:2173624	500	IDD1 "AT5G66730" [Arabidopsis	0.255	0.328	0.853	7.1e-94
TAIR|locus:2024193	506	MGP "AT1G03840" [Arabidopsis t	0.270	0.343	0.806	2.1e-93
TAIR|locus:2204503	467	AT1G14580 "AT1G14580" [Arabido	0.261	0.359	0.887	1.3e-92
TAIR|locus:2143543	503	JKD "AT5G03150" [Arabidopsis t	0.283	0.361	0.795	4.8e-92
TAIR|locus:2205672	455	IDD7 "AT1G55110" [Arabidopsis	0.311	0.439	0.721	1.1e-90
TAIR|locus:2078262	446	AT3G45260 "AT3G45260" [Arabido	0.317	0.457	0.704	1.1e-90
TAIR|locus:2167608	466	NUC "AT5G44160" [Arabidopsis t	0.314	0.433	0.716	1.1e-90
TAIR|locus:2101739	452	IDD2 "AT3G50700" [Arabidopsis	0.262	0.373	0.828	7.7e-90

TAIR|locus:2051698 IDD5 "AT2G02070" [Arabidopsis thaliana (taxid:3702)]

 Score = 941 (336.3 bits), Expect = 2.2e-115, Sum P(3) = 2.2e-115
 Identities = 192/277 (69%), Positives = 212/277 (76%)

Query:     1 MNMSASSSAPFFEIRED-QNQMKQQHXXXXX--------XXXXXXXXXXXQKKKRNQPGT 51
             M  S+SS+A FF +R+D Q+ +   +                        QKKKRNQP T
Sbjct:     1 MAASSSSAASFFGVRQDDQSHLLPPNSSAAAPPPPPPHHQAPLPPLEAPPQKKKRNQPRT 60

Query:    52 PNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRK 111
             PN DAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQK+TKEVKRK
Sbjct:    61 PNSDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRK 120

Query:   112 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCG 171
             VYLCPEP+CVHHDPSRALGDLTGIKKHY RKHGEKKWKC+KCSKRYAVQSDWKAHSKTCG
Sbjct:   121 VYLCPEPSCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCG 180

Query:   172 TREYRCDCGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYA---STNN----- 223
             T+EYRCDCGTLFSRRDSFITHRAFCDALAQESARH  SL+++ SH +    +TNN     
Sbjct:   181 TKEYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTSLTSLPSHHFPYGQNTNNSNNNA 240

Query:   224 --MALGLSQVG-PQLSSIKDHHQTNQSGDILCLGGSG 257
               M LGLS +G PQ  ++ DH    Q GD+L LG  G
Sbjct:   241 SSMILGLSHMGAPQ--NL-DH----QPGDVLRLGSGG 270

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2051688 IDD4 "indeterminate(ID)-domain 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 878 (314.1 bits), Expect = 5.3e-98, Sum P(2) = 5.3e-98
 Identities = 160/202 (79%), Positives = 181/202 (89%)

Query:    43 KKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQ 102
             KK+RNQPG PNPDAEV+ALSPKTLMATNRFIC+VCNKGFQREQNLQLHRRGHNLPWKLKQ
Sbjct:    54 KKRRNQPGNPNPDAEVVALSPKTLMATNRFICDVCNKGFQREQNLQLHRRGHNLPWKLKQ 113

Query:   103 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSD 162
             K+TKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHY RKHGEKKWKCEKCSKRYAVQSD
Sbjct:   114 KSTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKCSKRYAVQSD 173

Query:   163 WKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTN 222
             WKAHSKTCGT+EYRCDCGT+FSRRDS+ITHRAFCDAL QE+AR+ P++S   + + A+++
Sbjct:   174 WKAHSKTCGTKEYRCDCGTIFSRRDSYITHRAFCDALIQETARN-PTVSF--TSMTAASS 230

Query:   223 NMALG--LSQVGPQLSSIKDHH 242
              +  G    ++G   S++  HH
Sbjct:   231 GVGSGGIYGRLGGG-SALSHHH 251

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2173624 IDD1 "AT5G66730" [Arabidopsis thaliana (taxid:3702)]

 Score = 814 (291.6 bits), Expect = 7.1e-94, Sum P(4) = 7.1e-94
 Identities = 140/164 (85%), Positives = 157/164 (95%)

Query:    43 KKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQ 102
             KKKRN PG P+PDAEVIALSPKTLMATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKL+Q
Sbjct:    32 KKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQ 91

Query:   103 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSD 162
             ++TKEV++KVY+CP   CVHHDPSRALGDLTGIKKH+ RKHGEKKWKCEKCSK+YAVQSD
Sbjct:    92 RSTKEVRKKVYVCPVSGCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSD 151

Query:   163 WKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARH 206
             WKAHSK CGT+EY+CDCGTLFSRRDSFITHRAFCDALA+ESA++
Sbjct:   152 WKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEESAKN 195

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009937 "regulation of gibberellic acid mediated signaling pathway" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010431 "seed maturation" evidence=IMP

TAIR|locus:2024193 MGP "AT1G03840" [Arabidopsis thaliana (taxid:3702)]

 Score = 816 (292.3 bits), Expect = 2.1e-93, Sum P(3) = 2.1e-93
 Identities = 146/181 (80%), Positives = 167/181 (92%)

Query:    43 KKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQ 102
             KKKRN PG P+P+AEVIALSPKTLMATNRF+CE+C KGFQR+QNLQLHRRGHNLPWKLKQ
Sbjct:    41 KKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQ 100

Query:   103 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSD 162
             +T+KEV+++VY+CPE +CVHH P+RALGDLTGIKKH+ RKHGEKKWKCEKC+KRYAVQSD
Sbjct:   101 RTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSD 160

Query:   163 WKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHL--YAS 220
             WKAHSKTCGTREYRCDCGT+FSRRDSFITHRAFCDALA+E+AR    L+A  SHL  +A+
Sbjct:   161 WKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAR----LNA-ASHLKSFAA 215

Query:   221 T 221
             T
Sbjct:   216 T 216

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2204503 AT1G14580 "AT1G14580" [Arabidopsis thaliana (taxid:3702)]

 Score = 859 (307.4 bits), Expect = 1.3e-92, Sum P(2) = 1.3e-92
 Identities = 150/169 (88%), Positives = 164/169 (97%)

Query:    43 KKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQ 102
             KK+RNQPG PNPDAEVIALSPKT+MATNRF+CEVCNKGFQREQNLQLHRRGHNLPWKLKQ
Sbjct:    53 KKRRNQPGNPNPDAEVIALSPKTIMATNRFLCEVCNKGFQREQNLQLHRRGHNLPWKLKQ 112

Query:   103 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSD 162
             K+ KEV+RKVYLCPEP+CVHHDP+RALGDLTGIKKHY RKHGEKKWKC+KCSKRYAVQSD
Sbjct:   113 KSNKEVRRKVYLCPEPSCVHHDPARALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSD 172

Query:   163 WKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHQPSLS 211
             WKAHSKTCGT+EYRCDCGT+FSRRDS+ITHRAFCDAL QESAR+ P++S
Sbjct:   173 WKAHSKTCGTKEYRCDCGTIFSRRDSYITHRAFCDALIQESARN-PTVS 220

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2143543 JKD "AT5G03150" [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 4.8e-92, Sum P(3) = 4.8e-92
 Identities = 148/186 (79%), Positives = 166/186 (89%)

Query:    43 KKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQ 102
             KKKRNQPGTP+PDA+VIALSP TLMATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKLKQ
Sbjct:    53 KKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 112

Query:   103 KTTKEV-KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQS 161
             ++ +EV K+KVY+CP  TCVHHD SRALGDLTGIKKHYSRKHGEKKWKCEKCSK+YAVQS
Sbjct:   113 RSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQS 172

Query:   162 DWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYAST 221
             DWKAH+KTCGTREY+CDCGTLFSR+DSFITHRAFCDAL +E AR   SLS   ++   ST
Sbjct:   173 DWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGAR-MSSLS--NNNPVIST 229

Query:   222 NNMALG 227
              N+  G
Sbjct:   230 TNLNFG 235

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010075 "regulation of meristem growth" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0048364 "root development" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IMP

GO:0045604 "regulation of epidermal cell differentiation" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2205672 IDD7 "AT1G55110" [Arabidopsis thaliana (taxid:3702)]

 Score = 818 (293.0 bits), Expect = 1.1e-90, Sum P(3) = 1.1e-90
 Identities = 148/205 (72%), Positives = 172/205 (83%)

Query:    43 KKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQ 102
             K+KRNQPG P+P+AEV+ALSPKTLMATNRFICEVCNKGFQR+QNLQLH+RGHNLPWKLKQ
Sbjct:    63 KRKRNQPGNPDPEAEVMALSPKTLMATNRFICEVCNKGFQRDQNLQLHKRGHNLPWKLKQ 122

Query:   103 KTTKEV-KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQS 161
             ++ K+V ++KVY+CPEP CVHH PSRALGDLTGIKKH+ RKHGEKKWKCEKCSK+YAVQS
Sbjct:   123 RSNKDVVRKKVYVCPEPGCVHHHPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKKYAVQS 182

Query:   162 DWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHQPS---LSAIGS-HL 217
             DWKAH+KTCGT+EY+CDCGTLFSRRDSFITHRAFCDALA+ESAR  P+   + A  S H 
Sbjct:   183 DWKAHAKTCGTKEYKCDCGTLFSRRDSFITHRAFCDALAEESARAMPNPIMIQASNSPHH 242

Query:   218 YASTNNMALGLSQVGPQLSSIKDHH 242
             +       +G S     + S  + H
Sbjct:   243 HHHQTQQNIGFSSSSQNIISNSNLH 267

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2078262 AT3G45260 "AT3G45260" [Arabidopsis thaliana (taxid:3702)]

 Score = 806 (288.8 bits), Expect = 1.1e-90, Sum P(3) = 1.1e-90
 Identities = 148/210 (70%), Positives = 173/210 (82%)

Query:    43 KKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQ 102
             K+KRN PG P+PDAEVIALSP +LM TNRFICEVCNKGF+R+QNLQLHRRGHNLPWKLKQ
Sbjct:    39 KRKRNLPGNPDPDAEVIALSPNSLMTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQ 98

Query:   103 KTTKE-VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQS 161
             +T KE VK+KVY+CPE TCVHHDP+RALGDLTGIKKH+SRKHGEKKWKC+KCSK+YAV S
Sbjct:    99 RTNKEQVKKKVYICPEKTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVMS 158

Query:   162 DWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARH---QPSLSAIGSHLY 218
             DWKAHSK CGT+EYRCDCGTLFSR+DSFITHRAFCDALA+ESAR     P+ + + + L 
Sbjct:   159 DWKAHSKICGTKEYRCDCGTLFSRKDSFITHRAFCDALAEESARFVSVPPAPAYLNNALD 218

Query:   219 ASTNNMALGLSQVGPQLSSIKDHHQTNQSG 248
                N+  +  +    QL++     Q +Q G
Sbjct:   219 VEVNHGNINQNHQQRQLNTTSS--QLDQPG 246

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2167608 NUC "AT5G44160" [Arabidopsis thaliana (taxid:3702)]

 Score = 805 (288.4 bits), Expect = 1.1e-90, Sum P(3) = 1.1e-90
 Identities = 149/208 (71%), Positives = 169/208 (81%)

Query:    43 KKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQ 102
             KKKRN PG P+P+AEVIALSP TLMATNRF+CEVC KGFQR+QNLQLHRRGHNLPWKLKQ
Sbjct:    37 KKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQ 96

Query:   103 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSD 162
             +T+KEV+++VY+CPE TCVHH  SRALGDLTGIKKH+ RKHGEKKW CEKC+KRYAVQSD
Sbjct:    97 RTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSD 156

Query:   163 WKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESAR-----HQPSLSAIGSHL 217
             WKAHSKTCGTREYRCDCGT+FSRRDSFITHRAFCDALA+E+A+     H   L+A G+  
Sbjct:   157 WKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAKINAVSHLNGLAAAGAPG 216

Query:   218 YASTNNMALGLSQVGPQLSSIKDHHQTN 245
               + N   L +    P L       QTN
Sbjct:   217 SVNLNYQYL-MGTFIPPLQPFVPQPQTN 243

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0010260 "organ senescence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2101739 IDD2 "AT3G50700" [Arabidopsis thaliana (taxid:3702)]

 Score = 813 (291.2 bits), Expect = 7.7e-90, Sum P(3) = 7.7e-90
 Identities = 140/169 (82%), Positives = 159/169 (94%)

Query:    43 KKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQ 102
             KKKRN PG P+P++EVIALSPKTL+ATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKL+Q
Sbjct:    34 KKKRNLPGMPDPESEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQ 93

Query:   103 KTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSD 162
             K+ KEVK+KVY+CPE +CVHHDPSRALGDLTGIKKH+ RKHGEKKWKC+KCSK+YAVQSD
Sbjct:    94 KSNKEVKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSD 153

Query:   163 WKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHQPSLS 211
             WKAHSK CGT+EY+CDCGTLFSRRDSFITHRAFCDALA+E+AR   S S
Sbjct:   154 WKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEENARSHHSQS 202

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	643
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.9
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.89
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.79
KOG3608	467	consensus Zn finger proteins [General function pre	99.69
KOG3608	467	consensus Zn finger proteins [General function pre	99.65
KOG3576	267	consensus Ovo and related transcription factors [T	99.65
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.56
KOG3576	267	consensus Ovo and related transcription factors [T	99.5
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.41
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.4
PLN03086	567	PRLI-interacting factor K; Provisional	99.06
PLN03086	567	PRLI-interacting factor K; Provisional	98.93
PHA00733	128	hypothetical protein	98.79
PHA00733	128	hypothetical protein	98.75
KOG3993	500	consensus Transcription factor (contains Zn finger	98.64
KOG3993	500	consensus Transcription factor (contains Zn finger	98.36
PHA02768	55	hypothetical protein; Provisional	98.33
PHA02768	55	hypothetical protein; Provisional	98.21
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.07
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.87
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.68
PHA00732	79	hypothetical protein	97.46
PHA00616	44	hypothetical protein	97.41
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.28
PHA00732	79	hypothetical protein	97.17
PHA00616	44	hypothetical protein	97.13
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	97.02
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.86
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.77
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.75
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.73
COG5048	467	FOG: Zn-finger [General function prediction only]	96.47
COG5048	467	FOG: Zn-finger [General function prediction only]	96.45
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.35
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.23
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.11
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	95.91
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	95.9
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	95.88
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.59
KOG1146	1406	consensus Homeobox protein [General function predi	95.13
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	94.67
smart00355	26	ZnF_C2H2 zinc finger.	94.55
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	94.43
smart00355	26	ZnF_C2H2 zinc finger.	94.42
PRK04860	160	hypothetical protein; Provisional	94.24
PRK04860	160	hypothetical protein; Provisional	93.17
KOG1146	1406	consensus Homeobox protein [General function predi	93.16
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	93.09
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	92.74
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	92.49
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	92.32
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	91.81
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	91.59
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	91.27
KOG4124	442	consensus Putative transcriptional repressor regul	91.17
COG5236	493	Uncharacterized conserved protein, contains RING Z	90.41
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	90.3
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	88.32
KOG2893	341	consensus Zn finger protein [General function pred	88.26
KOG1280	381	consensus Uncharacterized conserved protein contai	86.06
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	84.97
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	84.13
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	83.92
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	83.21
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	81.74
KOG2893	341	consensus Zn finger protein [General function pred	80.26
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	80.25

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.90  E-value=1.4e-24  Score=218.79  Aligned_cols=135  Identities=22%  Similarity=0.411  Sum_probs=126.3

Q ss_pred             CCCCCCCCCCCCCCCChhhhhcCccccCC---CCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCC
Q 006487           40 PPQKKKRNQPGTPNPDAEVIALSPKTLMA---TNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCP  116 (643)
Q Consensus        40 ~p~~~~c~~cg~~~~~~~~l~~h~k~h~~---~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  116 (643)
                      ...+++|.+|++.+.....|.+|+.+|..   .+.+.|++|+|.|.+...|+.|+|+|+               -+++|.
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~---------------l~c~C~  191 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT---------------LPCECG  191 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC---------------CCcccc
Confidence            55678999999999999999999999865   678999999999999999999999994               578898


Q ss_pred             CCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCChHHHHHHHH
Q 006487          117 EPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRA  194 (643)
Q Consensus       117 ~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L~~H~~  194 (643)
                      +|       +|.|.....|+-|+|+|+|||||.|..|+|.|..+++|+.||++ .+.|+|.|. |+|.|.+++.|.+|..
T Consensus       192 iC-------GKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  192 IC-------GKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             cc-------cccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence            88       99999999999999999999999999999999999999999999 688999999 9999999999999987


Q ss_pred             Hh
Q 006487          195 FC  196 (643)
Q Consensus       195 ~H  196 (643)
                      ..
T Consensus       265 S~  266 (279)
T KOG2462|consen  265 SA  266 (279)
T ss_pred             hc
Confidence            54

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.89  E-value=1.1e-23  Score=212.38  Aligned_cols=137  Identities=18%  Similarity=0.360  Sum_probs=127.2

Q ss_pred             CCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcc
Q 006487           68 ATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKK  147 (643)
Q Consensus        68 ~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKp  147 (643)
                      ...+|+|++|+|.|.+..+|.+|+..|.          .-...+.+.|++|       +|+|.....|+.|+|+|+  -+
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~----------~~~s~ka~~C~~C-------~K~YvSmpALkMHirTH~--l~  187 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHR----------SLDSKKAFSCKYC-------GKVYVSMPALKMHIRTHT--LP  187 (279)
T ss_pred             cCCceeccccccccccccccchhhcccc----------cccccccccCCCC-------CceeeehHHHhhHhhccC--CC
Confidence            4567999999999999999999999994          1224788999999       999999999999999997  68


Q ss_pred             cccccccccccchhhhhhcccc-cCCceeecC-CCCCcCChHHHHHHHHHhhhhhhhhhhcCCCccccCCCCccCCcccc
Q 006487          148 WKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMA  225 (643)
Q Consensus       148 fkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L~~H~~~Hh~~~~~~~~~~~~~~~~~~k~y~C~~~C~  225 (643)
                      ++|.+|||.|.+.+-|+.|+|+ +|||||.|. |+|.|..+++|+.|+++|                .+.|.|.|.. |.
T Consensus       188 c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTH----------------S~~K~~qC~~-C~  250 (279)
T KOG2462|consen  188 CECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTH----------------SDVKKHQCPR-CG  250 (279)
T ss_pred             cccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhh----------------cCCccccCcc-hh
Confidence            9999999999999999999999 999999999 999999999999999999                7889999999 99


Q ss_pred             ccccccchhhhhhhh
Q 006487          226 LGLSQVGPQLSSIKD  240 (643)
Q Consensus       226 ~~fs~~s~L~~H~k~  240 (643)
                      |.|+..+-|.+|...
T Consensus       251 KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  251 KSFALKSYLNKHSES  265 (279)
T ss_pred             hHHHHHHHHHHhhhh
Confidence            999999999999754

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.79  E-value=6.7e-20  Score=205.52  Aligned_cols=73  Identities=22%  Similarity=0.503  Sum_probs=63.3

Q ss_pred             CCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccccCCce-----eecC----CCCCcCChHHHHHHHH
Q 006487          124 DPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTRE-----YRCD----CGTLFSRRDSFITHRA  194 (643)
Q Consensus       124 ~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rthgeKp-----y~C~----CgK~F~~ks~L~~H~~  194 (643)
                      .|.|+....+.|+.|+|+|++||||||.+|++.|.++-+|+.||.+|+.||     |.|.    |-+.|.....|..|++
T Consensus       610 iC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~lpQhIr  689 (958)
T KOG1074|consen  610 ICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTLPQHIR  689 (958)
T ss_pred             eeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccccccccceEE
Confidence            349999999999999999999999999999999999999999999876654     6664    7778877777777776


Q ss_pred             Hh
Q 006487          195 FC  196 (643)
Q Consensus       195 ~H  196 (643)
                      +|
T Consensus       690 iH  691 (958)
T KOG1074|consen  690 IH  691 (958)
T ss_pred             ee
Confidence            65

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.69  E-value=6.1e-18  Score=174.51  Aligned_cols=183  Identities=16%  Similarity=0.227  Sum_probs=107.2

Q ss_pred             CCCCCCCCCCCCCCCChhhhhcCccccCCCCccccCcccccccCchhHHhHhhhcC----CCccccccccc---------
Q 006487           40 PPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHN----LPWKLKQKTTK---------  106 (643)
Q Consensus        40 ~p~~~~c~~cg~~~~~~~~l~~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~----~~~~~~~~~~~---------  106 (643)
                      +........|-+.+.++..|..|.+.|+++|...|+.|+.-|.++..|..|+|..+    .++.|..+.+.         
T Consensus       176 pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~  255 (467)
T KOG3608|consen  176 PVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKS  255 (467)
T ss_pred             ceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHH
Confidence            34445567788999999999999999999999999999999999999999988764    11222211111         


Q ss_pred             cc--cCceeeCCCCCccCCCCCCcccChhhHHhHhhh-ccCCcccccccccccccchhhhhhcccccCCceeecC---CC
Q 006487          107 EV--KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSR-KHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD---CG  180 (643)
Q Consensus       107 ~~--~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~-H~geKpfkC~~CgKsF~~ks~L~~H~rthgeKpy~C~---Cg  180 (643)
                      |.  ....|+|+.|       .......+.|.+|++. |..+|||||+.|++.|.+.++|.+|..+|.+-.|.|+   |.
T Consensus       256 Hv~rHvn~ykCplC-------dmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~  328 (467)
T KOG3608|consen  256 HVVRHVNCYKCPLC-------DMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCH  328 (467)
T ss_pred             HHHHhhhccccccc-------ccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCCCCCc
Confidence            00  1123445444       4444444555555442 4444555555555555555555555544444445553   55


Q ss_pred             CCcCChHHHHHHHHHhhhhhhhhhhcCCCccccCCCCccCCccccccccccchhhhhhhhccC
Q 006487          181 TLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQ  243 (643)
Q Consensus       181 K~F~~ks~L~~H~~~Hh~~~~~~~~~~~~~~~~~~k~y~C~~~C~~~fs~~s~L~~H~k~hh~  243 (643)
                      ..|+.+..+++|++-+|.-             ....+|+|-. |++.|..--+|-.|+++.|.
T Consensus       329 ~s~r~~~q~~~H~~evhEg-------------~np~~Y~CH~-Cdr~ft~G~~L~~HL~kkH~  377 (467)
T KOG3608|consen  329 YSVRTYTQMRRHFLEVHEG-------------NNPILYACHC-CDRFFTSGKSLSAHLMKKHG  377 (467)
T ss_pred             HHHHHHHHHHHHHHHhccC-------------CCCCceeeec-chhhhccchhHHHHHHHhhc
Confidence            5555555555554444310             2233556655 66666655556566555544

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.65  E-value=4e-17  Score=168.54  Aligned_cols=149  Identities=19%  Similarity=0.267  Sum_probs=127.9

Q ss_pred             CCCCCCCCCCCCCChhhhhcCcccc--CCCCccccCcccccccCchhHHhHhhhcCCCcccccc--------------cc
Q 006487           42 QKKKRNQPGTPNPDAEVIALSPKTL--MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQK--------------TT  105 (643)
Q Consensus        42 ~~~~c~~cg~~~~~~~~l~~h~k~h--~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~--------------~~  105 (643)
                      +...|..|+.-|..+..|-.|.+..  ....+|.|..|.|.|.++..|+.|++.|-..++|..+              ..
T Consensus       206 KvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~  285 (467)
T KOG3608|consen  206 KVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRY  285 (467)
T ss_pred             eEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHHHHHh
Confidence            3457999999999999999887654  4567999999999999999999999999755554332              23


Q ss_pred             ccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCccccccc--ccccccchhhhhhcccc-c---CCceeecC-
Q 006487          106 KEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEK--CSKRYAVQSDWKAHSKT-C---GTREYRCD-  178 (643)
Q Consensus       106 ~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~--CgKsF~~ks~L~~H~rt-h---geKpy~C~-  178 (643)
                      +|.+.|+|+|++|       .+.|...+.|.+|..+|. +.-|.|+.  |...|.....+++|++. |   .+-+|.|. 
T Consensus       286 rHs~dkpfKCd~C-------d~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~  357 (467)
T KOG3608|consen  286 RHSKDKPFKCDEC-------DTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHC  357 (467)
T ss_pred             hhccCCCccccch-------hhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeec
Confidence            5678999999999       999999999999999998 77899988  99999999999999998 4   34679999 


Q ss_pred             CCCCcCChHHHHHHHHHhhh
Q 006487          179 CGTLFSRRDSFITHRAFCDA  198 (643)
Q Consensus       179 CgK~F~~ks~L~~H~~~Hh~  198 (643)
                      |.+.|++-.+|.+|++..|.
T Consensus       358 Cdr~ft~G~~L~~HL~kkH~  377 (467)
T KOG3608|consen  358 CDRFFTSGKSLSAHLMKKHG  377 (467)
T ss_pred             chhhhccchhHHHHHHHhhc
Confidence            99999999999999876654

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.65  E-value=9.3e-17  Score=155.25  Aligned_cols=113  Identities=26%  Similarity=0.553  Sum_probs=104.1

Q ss_pred             CCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCc
Q 006487           67 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK  146 (643)
Q Consensus        67 ~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geK  146 (643)
                      .+...|.|.+|+|.|.....|.+|++.|.             ..|.|.|..|       +|.|.+.-.|++|+|+|++.+
T Consensus       113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~-------------~vkr~lct~c-------gkgfndtfdlkrh~rthtgvr  172 (267)
T KOG3576|consen  113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHS-------------DVKRHLCTFC-------GKGFNDTFDLKRHTRTHTGVR  172 (267)
T ss_pred             CCCCeeeeehhhhhhhHHHHHHHHhhhcc-------------HHHHHHHhhc-------cCcccchhhhhhhhccccCcc
Confidence            34567999999999999999999999995             7789999998       999999999999999999999


Q ss_pred             ccccccccccccchhhhhhcccc-cC-----------CceeecC-CCCCcCChHHHHHHHHHhhhh
Q 006487          147 KWKCEKCSKRYAVQSDWKAHSKT-CG-----------TREYRCD-CGTLFSRRDSFITHRAFCDAL  199 (643)
Q Consensus       147 pfkC~~CgKsF~~ks~L~~H~rt-hg-----------eKpy~C~-CgK~F~~ks~L~~H~~~Hh~~  199 (643)
                      ||+|..|+|.|...-.|..|.+. |+           +|.|+|+ ||.+-.+...+..|++.||..
T Consensus       173 pykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~  238 (267)
T KOG3576|consen  173 PYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPF  238 (267)
T ss_pred             ccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCC
Confidence            99999999999999999999887 74           5789999 999999999999999999753

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.56  E-value=1.1e-15  Score=172.04  Aligned_cols=60  Identities=15%  Similarity=0.226  Sum_probs=55.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCChhhhhcCccccCCCCccccCcccccccCchhHHhHhhhcC
Q 006487           36 PPVPPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        36 ~~~~~p~~~~c~~cg~~~~~~~~l~~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      ...+...+-.|-+|-+.......|..|.++|++|+||+|++|++.|.++.+|+.|+-+|.
T Consensus       598 ~~~~~TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHk  657 (958)
T KOG1074|consen  598 SENKRTDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHK  657 (958)
T ss_pred             cccccCCccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccc
Confidence            344556678899999999999999999999999999999999999999999999999985

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.50  E-value=4.7e-15  Score=143.54  Aligned_cols=123  Identities=21%  Similarity=0.387  Sum_probs=110.1

Q ss_pred             cCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCCh
Q 006487          109 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRR  186 (643)
Q Consensus       109 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~k  186 (643)
                      ....|.|.+|       +|.|.....|.+|++.|...|.|-|..|+|.|...-+|++|+|+ +|.+||+|. |+|.|.++
T Consensus       114 d~d~ftCrvC-------gK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqr  186 (267)
T KOG3576|consen  114 DQDSFTCRVC-------GKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQR  186 (267)
T ss_pred             CCCeeeeehh-------hhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhh
Confidence            4678999999       99999999999999999999999999999999999999999999 899999999 99999999


Q ss_pred             HHHHHHHHHhhhhhhhhhhcCCCccccCCCCccCCccccccccccchhhhhhhhccCC
Q 006487          187 DSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQT  244 (643)
Q Consensus       187 s~L~~H~~~Hh~~~~~~~~~~~~~~~~~~k~y~C~~~C~~~fs~~s~L~~H~k~hh~~  244 (643)
                      ..|..|.+.-|.+....+...     ...|+|.|.+ |+.+-.....+..|++.||..
T Consensus       187 csleshl~kvhgv~~~yayke-----rr~kl~vced-cg~t~~~~e~~~~h~~~~hp~  238 (267)
T KOG3576|consen  187 CSLESHLKKVHGVQHQYAYKE-----RRAKLYVCED-CGYTSERPEVYYLHLKLHHPF  238 (267)
T ss_pred             ccHHHHHHHHcCchHHHHHHH-----hhhheeeecc-cCCCCCChhHHHHHHHhcCCC
Confidence            999999987776655444332     3578999999 999999999999999998654

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.41  E-value=4.7e-14  Score=156.52  Aligned_cols=108  Identities=23%  Similarity=0.516  Sum_probs=96.3

Q ss_pred             ccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccC------
Q 006487           71 RFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG------  144 (643)
Q Consensus        71 py~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~g------  144 (643)
                      ...|++|.+.|++...|+.|++..+           ...+..|.|..|       ...|.+.+.|.+|+.+|..      
T Consensus       210 lltcpycdrgykrltslkeHikyrh-----------ekne~nfsC~lC-------sytFAyRtQLErhm~~hkpg~dqa~  271 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYRH-----------EKNEPNFSCMLC-------SYTFAYRTQLERHMQLHKPGGDQAI  271 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHH-----------hhCCCCCcchhh-------hhhhhhHHHHHHHHHhhcCCCcccc
Confidence            4689999999999999999987653           135677889998       8999999999999999862      


Q ss_pred             -------Ccccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCChHHHHHHHHHh
Q 006487          145 -------EKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       145 -------eKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                             .++|||.+|+|.|+.+..|+.|+|+ .|||||.|+ |+|+|.....+..|+...
T Consensus       272 sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSSK  332 (1007)
T KOG3623|consen  272 SLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSSK  332 (1007)
T ss_pred             cccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccccc
Confidence                   4789999999999999999999999 799999999 999999999999998543

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.40  E-value=8.2e-14  Score=154.61  Aligned_cols=106  Identities=24%  Similarity=0.476  Sum_probs=95.4

Q ss_pred             eeeCCCCCccCCCCCCcccChhhHHhHhhhccC--Ccccccccccccccchhhhhhccccc--------------CCcee
Q 006487          112 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG--EKKWKCEKCSKRYAVQSDWKAHSKTC--------------GTREY  175 (643)
Q Consensus       112 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~g--eKpfkC~~CgKsF~~ks~L~~H~rth--------------geKpy  175 (643)
                      ...|++|       .+.|...+.|++|++.-+.  +..|.|..|.++|..+..|.+||.+|              ..|.|
T Consensus       210 lltcpyc-------drgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKF  282 (1007)
T KOG3623|consen  210 LLTCPYC-------DRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKF  282 (1007)
T ss_pred             hhcchhH-------HHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccc
Confidence            4689998       9999999999999986443  56799999999999999999999874              24779


Q ss_pred             ecC-CCCCcCChHHHHHHHHHhhhhhhhhhhcCCCccccCCCCccCCccccccccccchhhhhhhhc
Q 006487          176 RCD-CGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDH  241 (643)
Q Consensus       176 ~C~-CgK~F~~ks~L~~H~~~Hh~~~~~~~~~~~~~~~~~~k~y~C~~~C~~~fs~~s~L~~H~k~h  241 (643)
                      +|. |+|.|+.+.+|+.|+|||                .|+|||.|+. |.|+|+..+++-.||...
T Consensus       283 KCtECgKAFKfKHHLKEHlRIH----------------SGEKPfeCpn-CkKRFSHSGSySSHmSSK  332 (1007)
T KOG3623|consen  283 KCTECGKAFKFKHHLKEHLRIH----------------SGEKPFECPN-CKKRFSHSGSYSSHMSSK  332 (1007)
T ss_pred             cccccchhhhhHHHHHhhheee----------------cCCCCcCCcc-cccccccCCccccccccc
Confidence            998 999999999999999999                8999999999 999999999999998554

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.06  E-value=1.8e-10  Score=129.48  Aligned_cols=131  Identities=19%  Similarity=0.345  Sum_probs=100.6

Q ss_pred             CCCCCCCCCCCCCCChhhhhcCcccc-------------------CCCCccccCcccccccCchhHHhHhhhcCCCcccc
Q 006487           41 PQKKKRNQPGTPNPDAEVIALSPKTL-------------------MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLK  101 (643)
Q Consensus        41 p~~~~c~~cg~~~~~~~~l~~h~k~h-------------------~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~  101 (643)
                      +....|.-|....+..... .|....                   ..++.+.|+.|++.|. ...|..|++.|+      
T Consensus       405 ~~~V~C~NC~~~i~l~~l~-lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~-~s~LekH~~~~H------  476 (567)
T PLN03086        405 VDTVECRNCKHYIPSRSIA-LHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQ-QGEMEKHMKVFH------  476 (567)
T ss_pred             CCeEECCCCCCccchhHHH-HHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccc-hHHHHHHHHhcC------
Confidence            4445677777766554332 443222                   1245678999999995 678999998873      


Q ss_pred             ccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCccccccccccccc----------chhhhhhcccccC
Q 006487          102 QKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYA----------VQSDWKAHSKTCG  171 (643)
Q Consensus       102 ~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~----------~ks~L~~H~rthg  171 (643)
                               ++|.|+ |       ++.+ .+..|..|+++|..+|++.|.+|++.|.          ....|..|+.+++
T Consensus       477 ---------kpv~Cp-C-------g~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG  538 (567)
T PLN03086        477 ---------EPLQCP-C-------GVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICG  538 (567)
T ss_pred             ---------CCccCC-C-------CCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhcC
Confidence                     689998 7       7655 6689999999999999999999999995          2458999999999


Q ss_pred             CceeecC-CCCCcCChHHHHHHHHHhhh
Q 006487          172 TREYRCD-CGTLFSRRDSFITHRAFCDA  198 (643)
Q Consensus       172 eKpy~C~-CgK~F~~ks~L~~H~~~Hh~  198 (643)
                      .+++.|. |++.|..+ .|..|+..+|.
T Consensus       539 ~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        539 SRTAPCDSCGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             CcceEccccCCeeeeh-hHHHHHHHhhc
Confidence            9999999 99999765 68888876653

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.93  E-value=2.4e-09  Score=120.51  Aligned_cols=141  Identities=18%  Similarity=0.285  Sum_probs=101.2

Q ss_pred             ccccCcccccccCchhHHhHhhhcCCCc-c-----ccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccC
Q 006487           71 RFICEVCNKGFQREQNLQLHRRGHNLPW-K-----LKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG  144 (643)
Q Consensus        71 py~C~~CgK~F~~~~~L~~H~r~H~~~~-~-----~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~g  144 (643)
                      .-.|+.|.+.. ...+|..|........ .     |.........++.+.|+.|       ++.|. ...|++|+++|+ 
T Consensus       407 ~V~C~NC~~~i-~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~C-------gk~f~-~s~LekH~~~~H-  476 (567)
T PLN03086        407 TVECRNCKHYI-PSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKC-------GQAFQ-QGEMEKHMKVFH-  476 (567)
T ss_pred             eEECCCCCCcc-chhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCC-------CCccc-hHHHHHHHHhcC-
Confidence            35799998865 4577888986553211 1     2222233344567788887       88885 577899999885 


Q ss_pred             Ccccccccccccccchhhhhhcccc-cCCceeecC-CCCCcC----------ChHHHHHHHHHhhhhhhhhhhcCCCccc
Q 006487          145 EKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFS----------RRDSFITHRAFCDALAQESARHQPSLSA  212 (643)
Q Consensus       145 eKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~----------~ks~L~~H~~~Hh~~~~~~~~~~~~~~~  212 (643)
                       ++|.|+ |++.+ .+..|..|+++ +.+|++.|. |++.|.          +...|..|+..|                
T Consensus       477 -kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C----------------  537 (567)
T PLN03086        477 -EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC----------------  537 (567)
T ss_pred             -CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc----------------
Confidence             789999 99765 56889999888 888999999 999985          245788888766                


Q ss_pred             cCCCCccCCccccccccccchhhhhhhhccC
Q 006487          213 IGSHLYASTNNMALGLSQVGPQLSSIKDHHQ  243 (643)
Q Consensus       213 ~~~k~y~C~~~C~~~fs~~s~L~~H~k~hh~  243 (643)
                       +.+++.|.. |++.+... .+..|+...|.
T Consensus       538 -G~rt~~C~~-Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        538 -GSRTAPCDS-CGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             -CCcceEccc-cCCeeeeh-hHHHHHHHhhc
Confidence             778899977 98777654 55667655543

>PHA00733 hypothetical protein

Probab=98.79  E-value=2.6e-09  Score=99.40  Aligned_cols=84  Identities=14%  Similarity=0.256  Sum_probs=69.1

Q ss_pred             cCceeeCCCCCccCCCCCCcccChhhHHhH--h---hhccCCcccccccccccccchhhhhhcccccCCceeecC-CCCC
Q 006487          109 KRKVYLCPEPTCVHHDPSRALGDLTGIKKH--Y---SRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTL  182 (643)
Q Consensus       109 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H--~---r~H~geKpfkC~~CgKsF~~ks~L~~H~rthgeKpy~C~-CgK~  182 (643)
                      ..+++.|.+|       .+.|.....|..|  +   ..++.++||.|+.|++.|.....|..|++.+ +++|.|. |++.
T Consensus        37 ~~~~~~~~~~-------~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK~  108 (128)
T PHA00733         37 EQKRLIRAVV-------KTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGKE  108 (128)
T ss_pred             hhhhHHHHHH-------hhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCCc
Confidence            4688999998       6666666555554  1   1334588999999999999999999999975 5689999 9999


Q ss_pred             cCChHHHHHHHHHhhhhh
Q 006487          183 FSRRDSFITHRAFCDALA  200 (643)
Q Consensus       183 F~~ks~L~~H~~~Hh~~~  200 (643)
                      |.....|.+|++..|++.
T Consensus       109 F~~~~sL~~H~~~~h~~~  126 (128)
T PHA00733        109 FRNTDSTLDHVCKKHNIC  126 (128)
T ss_pred             cCCHHHHHHHHHHhcCcc
Confidence            999999999999887754

>PHA00733 hypothetical protein

Probab=98.75  E-value=5.5e-09  Score=97.24  Aligned_cols=98  Identities=16%  Similarity=0.143  Sum_probs=79.7

Q ss_pred             ChhhhhcCccccCCCCccccCcccccccCchhHHhH--hhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccCh
Q 006487           55 DAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLH--RRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDL  132 (643)
Q Consensus        55 ~~~~l~~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H--~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~  132 (643)
                      ..+.+..+.......+++.|.+|.+.|.....|..|  ++.|.          .....++|.|+.|       ++.|...
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~----------~~~~~kPy~C~~C-------gk~Fss~   86 (128)
T PHA00733         24 TLEELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLL----------TSKAVSPYVCPLC-------LMPFSSS   86 (128)
T ss_pred             CHHHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhc----------ccCCCCCccCCCC-------CCcCCCH
Confidence            345666665556667899999999999998888777  33321          1135789999998       9999999


Q ss_pred             hhHHhHhhhccCCcccccccccccccchhhhhhcccc-cC
Q 006487          133 TGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CG  171 (643)
Q Consensus       133 s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hg  171 (643)
                      ..|..|++.|  +++|.|.+|++.|.....|.+|++. |+
T Consensus        87 s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         87 VSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             HHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            9999999987  4689999999999999999999987 64

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.64  E-value=7.1e-09  Score=110.39  Aligned_cols=152  Identities=14%  Similarity=0.174  Sum_probs=114.2

Q ss_pred             CCCCCCCCCCCCCChhhhhcCccccCCCCccccCcccccccCchhHHhHhhhcCCCcccc-----c-ccc----------
Q 006487           42 QKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLK-----Q-KTT----------  105 (643)
Q Consensus        42 ~~~~c~~cg~~~~~~~~l~~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~-----~-~~~----------  105 (643)
                      -.+-|..|...|.|.-.|..|+......--|+|++|+|.|....+|..|+|.|.-.....     . +..          
T Consensus       266 GdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea  345 (500)
T KOG3993|consen  266 GDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEA  345 (500)
T ss_pred             HHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhc
Confidence            347799999999999999999877666666999999999999999999999995111110     0 000          


Q ss_pred             ----ccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC------------------------------------
Q 006487          106 ----KEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE------------------------------------  145 (643)
Q Consensus       106 ----~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge------------------------------------  145 (643)
                          .......|.|.+|       +|.|.+...|++|+.+|+..                                    
T Consensus       346 ~rsg~dss~gi~~C~~C-------~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g  418 (500)
T KOG3993|consen  346 ERSGDDSSSGIFSCHTC-------GKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHG  418 (500)
T ss_pred             cccCCcccCceeecHHh-------hhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccc
Confidence                0123347999998       99999999999998887631                                    


Q ss_pred             ----------cccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCChHHHHHHHHHhhhhh
Q 006487          146 ----------KKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDALA  200 (643)
Q Consensus       146 ----------KpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L~~H~~~Hh~~~  200 (643)
                                ....|++|+..+..+..-..|.|. +-+.-|.|+ |.-.|.....|.+|+..+|...
T Consensus       419 ~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hpse  485 (500)
T KOG3993|consen  419 DEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHPSE  485 (500)
T ss_pred             cceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcChHH
Confidence                      012356666666666665666665 666779999 9999999999999998887543

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.36  E-value=2.7e-07  Score=98.56  Aligned_cols=113  Identities=16%  Similarity=0.371  Sum_probs=77.7

Q ss_pred             ccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCccc-c
Q 006487           71 RFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKW-K  149 (643)
Q Consensus        71 py~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpf-k  149 (643)
                      .|.|..|...|.+...|..|+-..             +-...|+|++|       +|+|....+|..|+|+|.-.+-- +
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~R-------------IV~vEYrCPEC-------~KVFsCPANLASHRRWHKPR~eaa~  326 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPR-------------IVHVEYRCPEC-------DKVFSCPANLASHRRWHKPRPEAAK  326 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCe-------------eEEeeecCCcc-------cccccCchhhhhhhcccCCchhhhh
Confidence            399999999999999999997443             34578999999       99999999999999999632100 0


Q ss_pred             --cccccccccchhhhhhcccc---cCCceeecC-CCCCcCChHHHHHHHHHhhhhhhhh
Q 006487          150 --CEKCSKRYAVQSDWKAHSKT---CGTREYRCD-CGTLFSRRDSFITHRAFCDALAQES  203 (643)
Q Consensus       150 --C~~CgKsF~~ks~L~~H~rt---hgeKpy~C~-CgK~F~~ks~L~~H~~~Hh~~~~~~  203 (643)
                        -..=.+.-......+.-.|.   ..+..|.|. |+|.|++...|++|+..|+......
T Consensus       327 a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k  386 (500)
T KOG3993|consen  327 AGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAK  386 (500)
T ss_pred             cCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccch
Confidence              00000011111111111222   233579999 9999999999999999997655443

>PHA02768 hypothetical protein; Provisional

Probab=98.33  E-value=1e-07  Score=75.16  Aligned_cols=43  Identities=14%  Similarity=0.298  Sum_probs=29.4

Q ss_pred             eeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhh
Q 006487          113 YLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWK  164 (643)
Q Consensus       113 y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~  164 (643)
                      |.|++|       ++.|.....|..|+++|+  ++|+|..|+|.|.+.+.|.
T Consensus         6 y~C~~C-------GK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          6 YECPIC-------GEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             cCcchh-------CCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            566666       677777777777777766  5677777777776665553

>PHA02768 hypothetical protein; Provisional

Probab=98.21  E-value=6e-07  Score=70.82  Aligned_cols=44  Identities=16%  Similarity=0.446  Sum_probs=40.1

Q ss_pred             ccccccccccccchhhhhhcccccCCceeecC-CCCCcCChHHHHH
Q 006487          147 KWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFIT  191 (643)
Q Consensus       147 pfkC~~CgKsF~~ks~L~~H~rthgeKpy~C~-CgK~F~~ks~L~~  191 (643)
                      -|+|++|+|.|...+.|..|+|+|. ++|+|. |+|.|.+.+.|+.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~l~~   49 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGEYIE   49 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceecccceeEE
Confidence            4899999999999999999999965 899999 9999999888763

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.07  E-value=1.6e-06  Score=58.37  Aligned_cols=26  Identities=31%  Similarity=0.797  Sum_probs=23.3

Q ss_pred             hHHhHhhhccCCcccccccccccccc
Q 006487          134 GIKKHYSRKHGEKKWKCEKCSKRYAV  159 (643)
Q Consensus       134 ~L~~H~r~H~geKpfkC~~CgKsF~~  159 (643)
                      .|.+|+++|+++|||+|++|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            48899999999999999999999863

...

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.87  E-value=2.9e-06  Score=87.89  Aligned_cols=50  Identities=30%  Similarity=0.656  Sum_probs=37.3

Q ss_pred             Cccccccc--ccccccchhhhhhcccc-c-------------------CCceeecC-CCCCcCChHHHHHHHH
Q 006487          145 EKKWKCEK--CSKRYAVQSDWKAHSKT-C-------------------GTREYRCD-CGTLFSRRDSFITHRA  194 (643)
Q Consensus       145 eKpfkC~~--CgKsF~~ks~L~~H~rt-h-------------------geKpy~C~-CgK~F~~ks~L~~H~~  194 (643)
                      +|||+|++  |+|.|+.+.-|+.|+.. |                   ..|||+|+ |+|+|+...-|+.|++
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            36666655  66666666666666554 3                   45999999 9999999999999976

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.68  E-value=1.6e-05  Score=82.38  Aligned_cols=56  Identities=34%  Similarity=0.682  Sum_probs=49.5

Q ss_pred             cCceeeCCCCCccCCCCCCcccChhhHHhHhhhcc-------------------CCcccccccccccccchhhhhhcccc
Q 006487          109 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH-------------------GEKKWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       109 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~-------------------geKpfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      .+|||+|++.+|     .|+|+....|+.|+.--+                   .+|||+|++|+|+|+...-|+.|++.
T Consensus       346 d~KpykCpV~gC-----~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~H  420 (423)
T COG5189         346 DGKPYKCPVEGC-----NKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKH  420 (423)
T ss_pred             cCceecCCCCCc-----hhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecccc
Confidence            469999999988     999999999999987522                   25899999999999999999999875

>PHA00732 hypothetical protein

Probab=97.46  E-value=5.2e-05  Score=64.83  Aligned_cols=45  Identities=27%  Similarity=0.454  Sum_probs=29.4

Q ss_pred             eeeCCCCCccCCCCCCcccChhhHHhHhhh-ccCCcccccccccccccchhhhhhcccc
Q 006487          112 VYLCPEPTCVHHDPSRALGDLTGIKKHYSR-KHGEKKWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       112 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~-H~geKpfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      +|.|++|       ++.|.....|+.|++. |.   ++.|++|++.|.   .|..|+++
T Consensus         1 py~C~~C-------gk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPIC-------GFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCC-------CCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhcc
Confidence            4667666       7777777777777764 43   346777777776   46666654

>PHA00616 hypothetical protein

Probab=97.41  E-value=3.7e-05  Score=58.04  Aligned_cols=34  Identities=18%  Similarity=0.255  Sum_probs=21.6

Q ss_pred             eeeCCCCCccCCCCCCcccChhhHHhHhhhccCCccccccc
Q 006487          112 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEK  152 (643)
Q Consensus       112 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~  152 (643)
                      +|.|+.|       ++.|..+..|.+|++.|++++++.|+.
T Consensus         1 pYqC~~C-------G~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRC-------GGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchh-------hHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            4566665       666666666666666666666666654

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.28  E-value=7.2e-05  Score=50.30  Aligned_cols=24  Identities=38%  Similarity=0.951  Sum_probs=21.7

Q ss_pred             hhhhcccc-cCCceeecC-CCCCcCC
Q 006487          162 DWKAHSKT-CGTREYRCD-CGTLFSR  185 (643)
Q Consensus       162 ~L~~H~rt-hgeKpy~C~-CgK~F~~  185 (643)
                      +|.+|+++ +++|||.|+ |++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            48899999 899999999 9999964

...

>PHA00732 hypothetical protein

Probab=97.17  E-value=0.00027  Score=60.43  Aligned_cols=45  Identities=18%  Similarity=0.325  Sum_probs=39.2

Q ss_pred             ccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCChHHHHHHHHHh
Q 006487          147 KWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       147 pfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      ||+|+.|++.|.....|+.|++. |.  ++.|+ |++.|.   .|..|.+.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC---Chhhhhccc
Confidence            68999999999999999999985 54  46899 999998   488898655

>PHA00616 hypothetical protein

Probab=97.13  E-value=0.00015  Score=54.71  Aligned_cols=32  Identities=9%  Similarity=0.312  Sum_probs=30.7

Q ss_pred             ccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          147 KWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       147 pfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      ||+|..||+.|..+++|..|++. |+++++.|+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            69999999999999999999999 999999987

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.02  E-value=0.00052  Score=78.90  Aligned_cols=110  Identities=18%  Similarity=0.215  Sum_probs=70.9

Q ss_pred             ccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCC--CCCCcccChhhHHhHhhhc-cCCcc--
Q 006487           73 ICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHH--DPSRALGDLTGIKKHYSRK-HGEKK--  147 (643)
Q Consensus        73 ~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~--~~~k~F~~~s~L~~H~r~H-~geKp--  147 (643)
                      .|..| -.|.....|+.|++..|               +.+.|.+|.+.-.  ++.+.......|..|++.- .+++.  
T Consensus       117 ~~~~c-~~~~s~~~Lk~H~~~~H---------------~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~r  180 (669)
T KOG2231|consen  117 ECLHC-TEFKSVENLKNHMRDQH---------------KLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCR  180 (669)
T ss_pred             CCccc-cchhHHHHHHHHHHHhh---------------hhhccccccccceeeeeeeehehHHHHHHHHhcCCCcccccc
Confidence            34444 44457788999985433               4455666543100  1123334456677777652 22332  


Q ss_pred             --cccccccccccchhhhhhcccccCCceeec---C-CCCCcCChHHHHHHHHHhhh
Q 006487          148 --WKCEKCSKRYAVQSDWKAHSKTCGTREYRC---D-CGTLFSRRDSFITHRAFCDA  198 (643)
Q Consensus       148 --fkC~~CgKsF~~ks~L~~H~rthgeKpy~C---~-CgK~F~~ks~L~~H~~~Hh~  198 (643)
                        -.|..|...|.....|.+|++.+.+--..|   + |..-|.....|..|-+.+|.
T Consensus       181 Ghp~C~~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~Hf  237 (669)
T KOG2231|consen  181 GHPLCKFCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKGHF  237 (669)
T ss_pred             CCccchhhhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhcCc
Confidence              369999999999999999999844444445   2 66778889999999987764

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.86  E-value=0.00076  Score=53.31  Aligned_cols=47  Identities=21%  Similarity=0.449  Sum_probs=23.9

Q ss_pred             cccccccccccchhhhhhcccc-cC--CceeecC-CCCCcCChHHHHHHHHHhh
Q 006487          148 WKCEKCSKRYAVQSDWKAHSKT-CG--TREYRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       148 fkC~~CgKsF~~ks~L~~H~rt-hg--eKpy~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      |.|++|++ ......|..|... |.  .+.+.|+ |.+.+.  .+|.+|++.+|
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            55555555 3334455555554 32  2345565 655433  36666665543

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.77  E-value=0.0012  Score=52.08  Aligned_cols=52  Identities=27%  Similarity=0.502  Sum_probs=31.1

Q ss_pred             ccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhcc
Q 006487           71 RFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH  143 (643)
Q Consensus        71 py~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~  143 (643)
                      .|.|++|++. .+...|..|....+.           ...+.+.|++|       ...+.  ..|..|+..++
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~-----------~~~~~v~CPiC-------~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHR-----------SESKNVVCPIC-------SSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCc-----------CCCCCccCCCc-------hhhhh--hHHHHHHHHhc
Confidence            3778888884 445677777655431           12346777777       44333  36777776654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.75  E-value=0.0009  Score=43.17  Aligned_cols=22  Identities=32%  Similarity=0.748  Sum_probs=16.2

Q ss_pred             eecC-CCCCcCChHHHHHHHHHh
Q 006487          175 YRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       175 y~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      |+|+ |++.|.++..|.+|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            6677 777777777777777763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.73  E-value=0.00053  Score=44.27  Aligned_cols=23  Identities=39%  Similarity=0.899  Sum_probs=21.5

Q ss_pred             cccCcccccccCchhHHhHhhhc
Q 006487           72 FICEVCNKGFQREQNLQLHRRGH   94 (643)
Q Consensus        72 y~C~~CgK~F~~~~~L~~H~r~H   94 (643)
                      |+|++|++.|.++..|+.|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=96.47  E-value=0.0042  Score=66.93  Aligned_cols=140  Identities=19%  Similarity=0.203  Sum_probs=87.1

Q ss_pred             CCCCCCCCCCCCCChhhhhcCcc--ccCCC--CccccC--cccccccCchhHHhHhhhcCCCccccccc-----------
Q 006487           42 QKKKRNQPGTPNPDAEVIALSPK--TLMAT--NRFICE--VCNKGFQREQNLQLHRRGHNLPWKLKQKT-----------  104 (643)
Q Consensus        42 ~~~~c~~cg~~~~~~~~l~~h~k--~h~~~--kpy~C~--~CgK~F~~~~~L~~H~r~H~~~~~~~~~~-----------  104 (643)
                      ....|..|...+.....+..|.+  .|..+  +++.|+  .|++.|.+...+..|...|..........           
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence            46889999999999999999999  89999  999999  79999999999999999986221111000           


Q ss_pred             -----------cccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCc--ccccccccccccchhhhhhcccccC
Q 006487          105 -----------TKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK--KWKCEKCSKRYAVQSDWKAHSKTCG  171 (643)
Q Consensus       105 -----------~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geK--pfkC~~CgKsF~~ks~L~~H~rthg  171 (643)
                                 ......+.+.|..-.|     .+.+.....+..|...|...+  .++|..|.+.|.....+..|++.+.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (467)
T COG5048         368 NNEPPQSLQQYKDLKNDKKSETLSNSC-----IRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHT  442 (467)
T ss_pred             CCCCccchhhccCccCCccccccccch-----hhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccc
Confidence                       0001112223332222     445555555555655555544  3445556666666666666666633


Q ss_pred             C-ceeecCCCCCcCCh
Q 006487          172 T-REYRCDCGTLFSRR  186 (643)
Q Consensus       172 e-Kpy~C~CgK~F~~k  186 (643)
                      . .++.|.+-+.|...
T Consensus       443 ~~~~~~~~~~~~~~~~  458 (467)
T COG5048         443 NHAPLLCSILKSFRRD  458 (467)
T ss_pred             cCCceeeccccccchh
Confidence            3 33333344444433

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=96.45  E-value=0.0041  Score=66.94  Aligned_cols=149  Identities=15%  Similarity=0.139  Sum_probs=106.3

Q ss_pred             CccccCcccccccCchhHHhHhh--hcCCCccccccccccccC--ceeeCC--CCCccCCCCCCcccChhhHHhHhhhcc
Q 006487           70 NRFICEVCNKGFQREQNLQLHRR--GHNLPWKLKQKTTKEVKR--KVYLCP--EPTCVHHDPSRALGDLTGIKKHYSRKH  143 (643)
Q Consensus        70 kpy~C~~CgK~F~~~~~L~~H~r--~H~~~~~~~~~~~~~~~~--k~y~C~--~C~C~~~~~~k~F~~~s~L~~H~r~H~  143 (643)
                      .++.|..|.+.|.....|..|.+  .|.             .+  +++.|+  .|       ++.|.+...+..|..+|.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~-------------~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~  347 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHS-------------GESLKPFSCPYSLC-------GKLFSRNDALKRHILLHT  347 (467)
T ss_pred             cCCCCccccCCccccccccccccccccc-------------cccCCceeeeccCC-------CccccccccccCCccccc
Confidence            57899999999999999999998  674             66  899998  56       899999999999999999


Q ss_pred             CCccccccc--ccccccchhhhh-----hcccc-cCCceeecC---CCCCcCChHHHHHHHHHhhhhhhhhhhcCCCccc
Q 006487          144 GEKKWKCEK--CSKRYAVQSDWK-----AHSKT-CGTREYRCD---CGTLFSRRDSFITHRAFCDALAQESARHQPSLSA  212 (643)
Q Consensus       144 geKpfkC~~--CgKsF~~ks~L~-----~H~rt-hgeKpy~C~---CgK~F~~ks~L~~H~~~Hh~~~~~~~~~~~~~~~  212 (643)
                      ..++++|..  |.+.+.....-.     ..... ...+.+.|.   |-+.+.+...+..|...|-.              
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  413 (467)
T COG5048         348 SISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLS--------------  413 (467)
T ss_pred             CCCccccccccCccccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccc--------------
Confidence            988888765  555555444321     11112 556777884   88888888888888776621              


Q ss_pred             cCCCCccCCccccccccccchhhhhhhhccCCCCcccccccC
Q 006487          213 IGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQSGDILCLG  254 (643)
Q Consensus       213 ~~~k~y~C~~~C~~~fs~~s~L~~H~k~hh~~~~p~~c~~cg  254 (643)
                      .....+.+.. |.+.+...-.+..|++.| ....+..|..+.
T Consensus       414 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  453 (467)
T COG5048         414 FRPYNCKNPP-CSKSFNRHYNLIPHKKIH-TNHAPLLCSILK  453 (467)
T ss_pred             cCCcCCCCCc-chhhccCccccccccccc-ccCCceeecccc
Confidence            2223445555 888888888888888776 333444444443

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.35  E-value=0.0013  Score=57.11  Aligned_cols=22  Identities=23%  Similarity=0.572  Sum_probs=0.0

Q ss_pred             ccCcccccccCchhHHhHhhhc
Q 006487           73 ICEVCNKGFQREQNLQLHRRGH   94 (643)
Q Consensus        73 ~C~~CgK~F~~~~~L~~H~r~H   94 (643)
                      +|..|+..|.....|..|+...
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~   22 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKK   22 (100)
T ss_dssp             ----------------------
T ss_pred             Cccccccccccccccccccccc
Confidence            4777777777777777776544

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.23  E-value=0.0035  Score=40.14  Aligned_cols=23  Identities=22%  Similarity=0.634  Sum_probs=15.6

Q ss_pred             eecC-CCCCcCChHHHHHHHHHhh
Q 006487          175 YRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       175 y~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      |.|+ |++.|..+..|.+|++.||
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            5677 7777777777777777664

...

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.11  E-value=0.0025  Score=40.87  Aligned_cols=24  Identities=38%  Similarity=0.893  Sum_probs=20.1

Q ss_pred             cccCcccccccCchhHHhHhhhcC
Q 006487           72 FICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        72 y~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      |+|++|++.|.++..|+.|++.|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999998763

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=95.91  E-value=0.0034  Score=42.07  Aligned_cols=25  Identities=36%  Similarity=0.727  Sum_probs=23.4

Q ss_pred             ccccCcccccccCchhHHhHhhhcC
Q 006487           71 RFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        71 py~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      +|+|.+|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            5899999999999999999999884

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=95.90  E-value=0.0052  Score=53.38  Aligned_cols=72  Identities=17%  Similarity=0.272  Sum_probs=21.0

Q ss_pred             eCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccccCCceeecC-CCCCcCChHHHHHH
Q 006487          114 LCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITH  192 (643)
Q Consensus       114 ~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rthgeKpy~C~-CgK~F~~ks~L~~H  192 (643)
                      +|..|       +..|.....|..|+...++-..   + ..+.+.....+..+.+..-...+.|. |++.|.....|..|
T Consensus         1 ~C~~C-------~~~f~~~~~l~~H~~~~H~~~~---~-~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~H   69 (100)
T PF12756_consen    1 QCLFC-------DESFSSVDDLLQHMKKKHGFDI---P-DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEH   69 (100)
T ss_dssp             -----------------------------------------------------------SSEEBSSSS-EESSHHHHHHH
T ss_pred             Ccccc-------cccccccccccccccccccccc---c-cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHH
Confidence            36666       8999999999999987654321   1 11222234444445444333479999 99999999999999


Q ss_pred             HHHh
Q 006487          193 RAFC  196 (643)
Q Consensus       193 ~~~H  196 (643)
                      ++.+
T Consensus        70 m~~~   73 (100)
T PF12756_consen   70 MRSK   73 (100)
T ss_dssp             HHHT
T ss_pred             HcCc
Confidence            9965

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=95.88  E-value=0.0034  Score=42.08  Aligned_cols=24  Identities=29%  Similarity=0.650  Sum_probs=16.5

Q ss_pred             eeecC-CCCCcCChHHHHHHHHHhh
Q 006487          174 EYRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       174 py~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      +|.|+ |++.|.....|..|++.|+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            46676 7777777777777776664

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.59  E-value=0.014  Score=61.80  Aligned_cols=133  Identities=17%  Similarity=0.295  Sum_probs=77.3

Q ss_pred             cccCc--ccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCccc------ChhhHHhHhhhcc
Q 006487           72 FICEV--CNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALG------DLTGIKKHYSRKH  143 (643)
Q Consensus        72 y~C~~--CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~------~~s~L~~H~r~H~  143 (643)
                      |.|+.  |..+......|+.|.+..+               ..+.|.+|--    ..+.|.      ....|..|...-.
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H---------------~~~~C~~C~~----nKk~F~~E~~lF~~~~Lr~H~~~G~  212 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQH---------------GFVLCSECIG----NKKDFWNEIRLFRSSTLRDHKNGGL  212 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhc---------------CcEEhHhhhc----CcccCccceeeeecccccccccCCc
Confidence            67775  6665555677888877654               2334444411    012222      2344555655433


Q ss_pred             CCccc----ccccccccccchhhhhhcccccCCceeecC-CC----CCcCChHHHHHHHHHhhhhhhhhhhcCCCccccC
Q 006487          144 GEKKW----KCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CG----TLFSRRDSFITHRAFCDALAQESARHQPSLSAIG  214 (643)
Q Consensus       144 geKpf----kC~~CgKsF~~ks~L~~H~rthgeKpy~C~-Cg----K~F~~ks~L~~H~~~Hh~~~~~~~~~~~~~~~~~  214 (643)
                      .+.-|    .|..|.+.|..-..|.+|+|.-.|+-|.|+ -+    .-|+....|.+|.+.-                  
T Consensus       213 ~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~------------------  274 (493)
T COG5236         213 EEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNA------------------  274 (493)
T ss_pred             cccCcCCCchhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcC------------------
Confidence            33222    488888888888888888887446667775 32    3477777788876643                  


Q ss_pred             CCCccCCc-cc----cccccccchhhhhhhhccC
Q 006487          215 SHLYASTN-NM----ALGLSQVGPQLSSIKDHHQ  243 (643)
Q Consensus       215 ~k~y~C~~-~C----~~~fs~~s~L~~H~k~hh~  243 (643)
                        .|.|.. .|    -..|..--.|+.|+..-|.
T Consensus       275 --hy~ct~qtc~~~k~~vf~~~~el~~h~~~~h~  306 (493)
T COG5236         275 --HYCCTFQTCRVGKCYVFPYHTELLEHLTRFHK  306 (493)
T ss_pred             --ceEEEEEEEecCcEEEeccHHHHHHHHHHHhh
Confidence              233331 12    2346667788888866655

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=95.13  E-value=0.02  Score=69.82  Aligned_cols=137  Identities=12%  Similarity=0.107  Sum_probs=76.3

Q ss_pred             cCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhccc-ccCCceeecC-CCCCcCCh
Q 006487          109 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSK-TCGTREYRCD-CGTLFSRR  186 (643)
Q Consensus       109 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~r-thgeKpy~C~-CgK~F~~k  186 (643)
                      ..|.|+|+.|       .+.|+....|..|+|..+-+-.-  .+|. .+.....+.+=.. ..+.++|.|. |...+..+
T Consensus       462 ~~kt~~cpkc-------~~~yk~a~~L~vhmRskhp~~~~--~~c~-~gq~~~~~arg~~~~~~~~p~~C~~C~~stttn  531 (1406)
T KOG1146|consen  462 FFKTLKCPKC-------NWHYKLAQTLGVHMRSKHPESQS--AYCK-AGQNHPRLARGEVYRCPGKPYPCRACNYSTTTN  531 (1406)
T ss_pred             ccccccCCcc-------chhhhhHHHhhhcccccccccch--hHhH-hccccccccccccccCCCCcccceeeeeeeecc
Confidence            4477888887       78888888888888874432111  3331 1111111111111 1567899999 99999999


Q ss_pred             HHHHHHHHHh--hhhhhhh---------------hhcCCCcc----------ccCCCCccCCccccccccccchhhhhhh
Q 006487          187 DSFITHRAFC--DALAQES---------------ARHQPSLS----------AIGSHLYASTNNMALGLSQVGPQLSSIK  239 (643)
Q Consensus       187 s~L~~H~~~H--h~~~~~~---------------~~~~~~~~----------~~~~k~y~C~~~C~~~fs~~s~L~~H~k  239 (643)
                      ..|.+|++..  .......               +...+...          ...+..+.|.. |..--.-..+|..||.
T Consensus       532 g~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~v-c~yetniarnlrihmt  610 (1406)
T KOG1146|consen  532 GNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEV-CSYETNIARNLRIHMT  610 (1406)
T ss_pred             hHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhh-hcchhhhhhccccccc
Confidence            9999998643  2221110               00111100          11123467776 7655555566777776


Q ss_pred             hccCCCCcccccccCCC
Q 006487          240 DHHQTNQSGDILCLGGS  256 (643)
Q Consensus       240 ~hh~~~~p~~c~~cg~a  256 (643)
                      .-+...-|..|+.+.-.
T Consensus       611 ss~~s~~p~~~Lq~~it  627 (1406)
T KOG1146|consen  611 ASPSSSPPSLVLQQNIT  627 (1406)
T ss_pred             cCCCCCChHHHhhhcch
Confidence            54444445667777654

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.67  E-value=0.026  Score=65.33  Aligned_cols=128  Identities=19%  Similarity=0.243  Sum_probs=76.1

Q ss_pred             CCCCCCCCCCCCCChhhhhcCccccCCCCccccCcc----------cccccCchhHHhHhhhcCCCccccccccccccCc
Q 006487           42 QKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVC----------NKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRK  111 (643)
Q Consensus        42 ~~~~c~~cg~~~~~~~~l~~h~k~h~~~kpy~C~~C----------gK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k  111 (643)
                      .++.|..| ..|.....|..|....+  +.+.|.+|          .|.| +...|..|++.-- +     ....+.+  
T Consensus       114 ~~~~~~~c-~~~~s~~~Lk~H~~~~H--~~~~c~lC~~~~kif~~e~k~Y-t~~el~~h~~~gd-~-----d~~s~rG--  181 (669)
T KOG2231|consen  114 NKKECLHC-TEFKSVENLKNHMRDQH--KLHLCSLCLQNLKIFINERKLY-TRAELNLHLMFGD-P-----DDESCRG--  181 (669)
T ss_pred             ccCCCccc-cchhHHHHHHHHHHHhh--hhhccccccccceeeeeeeehe-hHHHHHHHHhcCC-C-----ccccccC--
Confidence            34455555 44556777777774333  23455544          3333 4466677765431 0     0111111  


Q ss_pred             eeeCCCCCccCCCCCCcccChhhHHhHhhhccCCccccccccc------ccccchhhhhhcccc-cCCceeecC---CC-
Q 006487          112 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCS------KRYAVQSDWKAHSKT-CGTREYRCD---CG-  180 (643)
Q Consensus       112 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~Cg------KsF~~ks~L~~H~rt-hgeKpy~C~---Cg-  180 (643)
                      --.|..|       ...|.....|.+|++.++    |.|..|+      ..|....+|..|.|. |    |.|+   |. 
T Consensus       182 hp~C~~C-------~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H----flCE~~~C~~  246 (669)
T KOG2231|consen  182 HPLCKFC-------HERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH----FLCEEEFCRT  246 (669)
T ss_pred             Cccchhh-------hhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC----cccccccccc
Confidence            3467777       889999999999999876    6677774      457778889999887 5    6664   43 


Q ss_pred             CCcCChHHHHHHHHHh
Q 006487          181 TLFSRRDSFITHRAFC  196 (643)
Q Consensus       181 K~F~~ks~L~~H~~~H  196 (643)
                      +.|..-..+..|++-|
T Consensus       247 ~~f~~~~~~ei~lk~~  262 (669)
T KOG2231|consen  247 KKFYVAFELEIELKAH  262 (669)
T ss_pred             ceeeehhHHHHHHHhh
Confidence            3333333455555533

>smart00355 ZnF_C2H2 zinc finger

Probab=94.55  E-value=0.027  Score=36.26  Aligned_cols=22  Identities=32%  Similarity=0.825  Sum_probs=18.6

Q ss_pred             eecC-CCCCcCChHHHHHHHHHh
Q 006487          175 YRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       175 y~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      |+|. |++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            5788 888888888899888866

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.43  E-value=0.014  Score=45.42  Aligned_cols=30  Identities=13%  Similarity=0.229  Sum_probs=14.8

Q ss_pred             Ccccccccccccccchhhhhhcccc-cCCce
Q 006487          145 EKKWKCEKCSKRYAVQSDWKAHSKT-CGTRE  174 (643)
Q Consensus       145 eKpfkC~~CgKsF~~ks~L~~H~rt-hgeKp  174 (643)
                      ++|-.|++|+..+....+|++|+.+ |+.||
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            4566666666666666666666655 55544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=94.42  E-value=0.02  Score=36.93  Aligned_cols=23  Identities=35%  Similarity=0.719  Sum_probs=21.5

Q ss_pred             cccCcccccccCchhHHhHhhhc
Q 006487           72 FICEVCNKGFQREQNLQLHRRGH   94 (643)
Q Consensus        72 y~C~~CgK~F~~~~~L~~H~r~H   94 (643)
                      |+|..|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            68999999999999999999876

>PRK04860 hypothetical protein; Provisional

Probab=94.24  E-value=0.025  Score=54.81  Aligned_cols=27  Identities=19%  Similarity=0.597  Sum_probs=13.4

Q ss_pred             hhhHHhHhhhccCCccccccccccccc
Q 006487          132 LTGIKKHYSRKHGEKKWKCEKCSKRYA  158 (643)
Q Consensus       132 ~s~L~~H~r~H~geKpfkC~~CgKsF~  158 (643)
                      ...+.+|.++|+++++|+|..|++.|.
T Consensus       128 ~~~~rrH~ri~~g~~~YrC~~C~~~l~  154 (160)
T PRK04860        128 QLTVRRHNRVVRGEAVYRCRRCGETLV  154 (160)
T ss_pred             eCHHHHHHHHhcCCccEECCCCCceeE
Confidence            334455555555555555555554443

>PRK04860 hypothetical protein; Provisional

Probab=93.17  E-value=0.029  Score=54.44  Aligned_cols=38  Identities=26%  Similarity=0.693  Sum_probs=32.6

Q ss_pred             cccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCChH
Q 006487          146 KKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRD  187 (643)
Q Consensus       146 KpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks  187 (643)
                      -+|.|. |++   ....+++|.++ .++++|+|. |++.|....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            379998 998   77788999999 889999999 999987643

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=93.16  E-value=0.037  Score=67.53  Aligned_cols=19  Identities=32%  Similarity=0.602  Sum_probs=10.9

Q ss_pred             cC-CCCCcCChHHHHHHHHH
Q 006487          177 CD-CGTLFSRRDSFITHRAF  195 (643)
Q Consensus       177 C~-CgK~F~~ks~L~~H~~~  195 (643)
                      |. |...|..+..|..|++.
T Consensus      1331 c~~c~~~~~~~~alqihm~~ 1350 (1406)
T KOG1146|consen 1331 CLACEVLLSGREALQIHMRS 1350 (1406)
T ss_pred             chHHHhhcchhHHHHHHHHH
Confidence            55 55555555555555554

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=93.09  E-value=0.038  Score=36.22  Aligned_cols=23  Identities=43%  Similarity=0.986  Sum_probs=21.4

Q ss_pred             cccCcccccccCchhHHhHhhhc
Q 006487           72 FICEVCNKGFQREQNLQLHRRGH   94 (643)
Q Consensus        72 y~C~~CgK~F~~~~~L~~H~r~H   94 (643)
                      |.|.+|++.|.++..|+.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999999865

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=92.74  E-value=0.15  Score=54.14  Aligned_cols=94  Identities=13%  Similarity=0.213  Sum_probs=65.7

Q ss_pred             ccccccccccccchhhhhhcccc--cCC----------------------------------------------------
Q 006487          147 KWKCEKCSKRYAVQSDWKAHSKT--CGT----------------------------------------------------  172 (643)
Q Consensus       147 pfkC~~CgKsF~~ks~L~~H~rt--hge----------------------------------------------------  172 (643)
                      .+.|-.|.|.|..+..|+.|||.  |.+                                                    
T Consensus       195 r~~CLyCekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~  274 (423)
T KOG2482|consen  195 RLRCLYCEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDD  274 (423)
T ss_pred             hheeeeeccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCC
Confidence            46788888888888888888876  410                                                    


Q ss_pred             -ce--eecC-CCCCcCChHHHHHHHHHhhhhhhhhhhcCCCcc-----------ccCCCCccCCccccccccccchhhhh
Q 006487          173 -RE--YRCD-CGTLFSRRDSFITHRAFCDALAQESARHQPSLS-----------AIGSHLYASTNNMALGLSQVGPQLSS  237 (643)
Q Consensus       173 -Kp--y~C~-CgK~F~~ks~L~~H~~~Hh~~~~~~~~~~~~~~-----------~~~~k~y~C~~~C~~~fs~~s~L~~H  237 (643)
                       .+  .+|- |...+.....|..|+++.|............+.           ....+...|-. |...|-....|+.|
T Consensus       275 a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~-cd~~F~~e~~l~~h  353 (423)
T KOG2482|consen  275 AEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAE-CDLSFWKEPGLLIH  353 (423)
T ss_pred             CCccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhcccccc-ccccccCcchhhhh
Confidence             11  3898 999999999999999988765544332221111           11223445666 88899999999999


Q ss_pred             hhhc
Q 006487          238 IKDH  241 (643)
Q Consensus       238 ~k~h  241 (643)
                      |-.+
T Consensus       354 m~e~  357 (423)
T KOG2482|consen  354 MVED  357 (423)
T ss_pred             cccc
Confidence            8654

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.49  E-value=0.1  Score=40.70  Aligned_cols=33  Identities=15%  Similarity=0.289  Sum_probs=24.5

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKK  147 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKp  147 (643)
                      ..+.|..|++|       +..+....+|++|+.++++.||
T Consensus        20 ~S~~PatCP~C-------~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPIC-------GAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT---------EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcc-------hhhccchhhHHHHHHHHhcccC
Confidence            46789999999       9999999999999999888776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.32  E-value=0.039  Score=54.75  Aligned_cols=82  Identities=21%  Similarity=0.489  Sum_probs=67.0

Q ss_pred             cCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc-c----------CCceeec
Q 006487          109 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-C----------GTREYRC  177 (643)
Q Consensus       109 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-h----------geKpy~C  177 (643)
                      ..+.+.|++-+|     -+.|.....+..|+.+-++.   .|.+|.+.|.+..-|..|+.. |          |..-|.|
T Consensus        76 ~~~~~~cqvagc-----~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~C  147 (253)
T KOG4173|consen   76 RVPAFACQVAGC-----CQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQC  147 (253)
T ss_pred             ccccccccccch-----HHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHH
Confidence            456788999877     78898888888888765443   799999999999999999875 4          4567999


Q ss_pred             --C-CCCCcCChHHHHHHHHHhhh
Q 006487          178 --D-CGTLFSRRDSFITHRAFCDA  198 (643)
Q Consensus       178 --~-CgK~F~~ks~L~~H~~~Hh~  198 (643)
                        + |+..|++...-++|+-.-|+
T Consensus       148 lvEgCt~KFkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  148 LVEGCTEKFKTSRDRKDHMIRMHK  171 (253)
T ss_pred             HHHhhhhhhhhhhhhhhHHHHhcc
Confidence              5 99999999999999855443

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=91.81  E-value=0.1  Score=35.12  Aligned_cols=22  Identities=27%  Similarity=0.742  Sum_probs=18.5

Q ss_pred             cccccccccccchhhhhhcccc
Q 006487          148 WKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       148 fkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      |.|..|++.|.....|+.|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788888888888888888875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=91.59  E-value=0.075  Score=35.77  Aligned_cols=23  Identities=35%  Similarity=0.832  Sum_probs=21.1

Q ss_pred             cccCcccccccCchhHHhHhhhc
Q 006487           72 FICEVCNKGFQREQNLQLHRRGH   94 (643)
Q Consensus        72 y~C~~CgK~F~~~~~L~~H~r~H   94 (643)
                      |.|.+|++.|.+...|+.|++..
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCcccCCCCcCCHHHHHHHHccC
Confidence            78999999999999999998764

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=91.27  E-value=0.17  Score=32.92  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=14.7

Q ss_pred             eecC-CCCCcCChHHHHHHHHHhh
Q 006487          175 YRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       175 y~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      |+|+ |..... +..|.+|++.||
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            6777 777776 777888877765

>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]

Probab=91.17  E-value=0.051  Score=57.73  Aligned_cols=52  Identities=29%  Similarity=0.652  Sum_probs=42.0

Q ss_pred             Cccccccc--ccccccchhhhhhcccc-c-------------------CCceeecC-CCCCcCChHHHHHHHHHh
Q 006487          145 EKKWKCEK--CSKRYAVQSDWKAHSKT-C-------------------GTREYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       145 eKpfkC~~--CgKsF~~ks~L~~H~rt-h-------------------geKpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      +|+|+|++  |+|.+.....|+.|..+ |                   ..|+|+|+ |.|+++-...|+.|+..-
T Consensus       347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l~~~~~~~  421 (442)
T KOG4124|consen  347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNGLKYHRTHS  421 (442)
T ss_pred             cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCCCCceeehh
Confidence            58899976  99999998888888765 3                   35889999 999998887777776543

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=90.41  E-value=0.2  Score=53.26  Aligned_cols=107  Identities=21%  Similarity=0.376  Sum_probs=71.5

Q ss_pred             eeeCCCCCccCCCCCCcccChhhHHhHhhhccCCccccccccc---cccc------chhhhhhcccc-cCCce----eec
Q 006487          112 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCS---KRYA------VQSDWKAHSKT-CGTRE----YRC  177 (643)
Q Consensus       112 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~Cg---KsF~------~ks~L~~H~rt-hgeKp----y~C  177 (643)
                      .|.|+.-.|     .........|+.|.+..++  .+.|.+|-   +.|.      ++..|+.|... -.+.-    -.|
T Consensus       151 ~F~CP~skc-----~~~C~~~k~lk~H~K~~H~--~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C  223 (493)
T COG5236         151 SFKCPKSKC-----HRRCGSLKELKKHYKAQHG--FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLC  223 (493)
T ss_pred             HhcCCchhh-----hhhhhhHHHHHHHHHhhcC--cEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchh
Confidence            478887655     6666778899999998654  36777772   3343      45667777766 22222    369


Q ss_pred             C-CCCCcCChHHHHHHHHHhhhhhhhhhhcCCCccccCCCCccCCcc---ccccccccchhhhhhhhcc
Q 006487          178 D-CGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNN---MALGLSQVGPQLSSIKDHH  242 (643)
Q Consensus       178 ~-CgK~F~~ks~L~~H~~~Hh~~~~~~~~~~~~~~~~~~k~y~C~~~---C~~~fs~~s~L~~H~k~hh  242 (643)
                      . |.+.|..-+.|.+|+|.-|.                 +.|.|...   --.-|....+|..|.+.-|
T Consensus       224 ~FC~~~FYdDDEL~~HcR~~HE-----------------~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h  275 (493)
T COG5236         224 IFCKIYFYDDDELRRHCRLRHE-----------------ACHICDMVGPIRYQYFKSYEDLEAHFRNAH  275 (493)
T ss_pred             hhccceecChHHHHHHHHhhhh-----------------hhhhhhccCccchhhhhCHHHHHHHhhcCc
Confidence            9 99999999999999986542                 33444331   1123566688889987654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=90.30  E-value=0.1  Score=34.15  Aligned_cols=20  Identities=20%  Similarity=0.702  Sum_probs=9.2

Q ss_pred             ccccccccccchhhhhhccc
Q 006487          149 KCEKCSKRYAVQSDWKAHSK  168 (643)
Q Consensus       149 kC~~CgKsF~~ks~L~~H~r  168 (643)
                      .|.+|++.|..+..|+.|++
T Consensus         2 ~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    2 YCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCcCCHHHHHHHHC
Confidence            34444444444444444443

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=88.32  E-value=0.3  Score=51.99  Aligned_cols=49  Identities=20%  Similarity=0.320  Sum_probs=37.4

Q ss_pred             cccccccccccchhhhhhcccc-cC---------------------------CceeecC-CCCCcCChHHHHHHHHHh
Q 006487          148 WKCEKCSKRYAVQSDWKAHSKT-CG---------------------------TREYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       148 fkC~~CgKsF~~ks~L~~H~rt-hg---------------------------eKpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      .+|-.|.+.+.....|..||++ |.                           .+.-.|- |...|.....|..|+.-+
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~  357 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVED  357 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccc
Confidence            4788888888888888888877 51                           1223566 999999999999998754

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=88.26  E-value=0.18  Score=51.16  Aligned_cols=42  Identities=26%  Similarity=0.437  Sum_probs=27.9

Q ss_pred             eCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhc
Q 006487          114 LCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAH  166 (643)
Q Consensus       114 ~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H  166 (643)
                      .|.+|       ++.|.+..-|..|++..+    |+|.+|.|...+--.|..|
T Consensus        12 wcwyc-------nrefddekiliqhqkakh----fkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   12 WCWYC-------NREFDDEKILIQHQKAKH----FKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeeec-------ccccchhhhhhhhhhhcc----ceeeeehhhhccCCCceee
Confidence            46666       788888777777777543    7888887655444444444

>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]

Probab=86.06  E-value=0.77  Score=49.15  Aligned_cols=31  Identities=10%  Similarity=0.218  Sum_probs=21.4

Q ss_pred             Ccccccccccccccchhhhhhcccc-cCCcee
Q 006487          145 EKKWKCEKCSKRYAVQSDWKAHSKT-CGTREY  175 (643)
Q Consensus       145 eKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy  175 (643)
                      +..|.|++|++.=.+...|..|... |.+-.+
T Consensus        77 ~qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~~  108 (381)
T KOG1280|consen   77 PQSFTCPYCGIMGFTERQFGTHVLSQHPEAST  108 (381)
T ss_pred             cccccCCcccccccchhHHHHHhhhcCcccCc
Confidence            3467888888777777777777766 655444

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=84.97  E-value=0.98  Score=49.02  Aligned_cols=49  Identities=20%  Similarity=0.294  Sum_probs=40.5

Q ss_pred             cccccccccccccchhhhhhcccc-cCC-----------------------ceeecC-CC---CCcCChHHHHHHHH
Q 006487          146 KKWKCEKCSKRYAVQSDWKAHSKT-CGT-----------------------REYRCD-CG---TLFSRRDSFITHRA  194 (643)
Q Consensus       146 KpfkC~~CgKsF~~ks~L~~H~rt-hge-----------------------Kpy~C~-Cg---K~F~~ks~L~~H~~  194 (643)
                      -|-.|-.|++.|..-..-..||.. |+-                       .-|.|- |.   +.|......+.||.
T Consensus       165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~  241 (390)
T KOG2785|consen  165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMR  241 (390)
T ss_pred             CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHh
Confidence            467799999999999888899987 631                       237888 88   99999999999996

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=84.13  E-value=0.68  Score=30.01  Aligned_cols=16  Identities=25%  Similarity=0.428  Sum_probs=7.1

Q ss_pred             CCcccChhhHHhHhhhc
Q 006487          126 SRALGDLTGIKKHYSRK  142 (643)
Q Consensus       126 ~k~F~~~s~L~~H~r~H  142 (643)
                      ..... ...|.+|+++|
T Consensus         7 ~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    7 SYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             S-EES-HHHHHHHHHHH
T ss_pred             CCcCC-HHHHHHHHHhh
Confidence            44444 44555555543

>smart00451 ZnF_U1 U1-like zinc finger

Probab=83.92  E-value=0.57  Score=32.99  Aligned_cols=24  Identities=33%  Similarity=0.800  Sum_probs=21.5

Q ss_pred             ccccCcccccccCchhHHhHhhhc
Q 006487           71 RFICEVCNKGFQREQNLQLHRRGH   94 (643)
Q Consensus        71 py~C~~CgK~F~~~~~L~~H~r~H   94 (643)
                      +|.|++|++.|.....+..|++..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChH
Confidence            589999999999999999998654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=83.21  E-value=0.97  Score=49.06  Aligned_cols=161  Identities=14%  Similarity=0.190  Sum_probs=97.9

Q ss_pred             ccccCcccccccCchhHHhHhhh--cCCCccccc-----------------------ccc-ccccCceeeCCCCCccCCC
Q 006487           71 RFICEVCNKGFQREQNLQLHRRG--HNLPWKLKQ-----------------------KTT-KEVKRKVYLCPEPTCVHHD  124 (643)
Q Consensus        71 py~C~~CgK~F~~~~~L~~H~r~--H~~~~~~~~-----------------------~~~-~~~~~k~y~C~~C~C~~~~  124 (643)
                      -|.|..|...|.+...-+.|.++  |.  +-+++                       ... ....+.++.|..|      
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHR--YNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c------   74 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKSDWHR--YNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEAC------   74 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhhhHHH--hhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHh------
Confidence            37899999999888888888765  32  11111                       001 1345678999998      


Q ss_pred             CCCcccChhhHHhHhhhccC-----------------Ccccc-------------cccccccccchhhhhhcccc-----
Q 006487          125 PSRALGDLTGIKKHYSRKHG-----------------EKKWK-------------CEKCSKRYAVQSDWKAHSKT-----  169 (643)
Q Consensus       125 ~~k~F~~~s~L~~H~r~H~g-----------------eKpfk-------------C~~CgKsF~~ks~L~~H~rt-----  169 (643)
                       .|.|........|+.....                 .+...             |..|-..+........+...     
T Consensus        75 -~k~~~s~~a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~e~~~dd~~Ed  153 (390)
T KOG2785|consen   75 -NKSFASPKAHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSEEEEEDDEEED  153 (390)
T ss_pred             -hccccChhhHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccchhhccCcchhh
Confidence             8999988888888753211                 01222             33333333332222222221     


Q ss_pred             --------cCCceeecC-CCCCcCChHHHHHHHHHhhhhhhhhhhcCC----CccccCCC---CccCCcccc---ccccc
Q 006487          170 --------CGTREYRCD-CGTLFSRRDSFITHRAFCDALAQESARHQP----SLSAIGSH---LYASTNNMA---LGLSQ  230 (643)
Q Consensus       170 --------hgeKpy~C~-CgK~F~~ks~L~~H~~~Hh~~~~~~~~~~~----~~~~~~~k---~y~C~~~C~---~~fs~  230 (643)
                              -..-|-.|- |.+.|..-..-.+||..+|...........    .+...+++   -+.|-. |.   +.|+.
T Consensus       154 i~~d~~~e~e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~-CN~~~~~f~s  232 (390)
T KOG2785|consen  154 IEEDGDDEDELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLF-CNELGRPFSS  232 (390)
T ss_pred             hhhccchhcccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEE-eccccCcccc
Confidence                    012356788 999999999999999999876544332221    22333333   355555 77   88888


Q ss_pred             cchhhhhhhhc
Q 006487          231 VGPQLSSIKDH  241 (643)
Q Consensus       231 ~s~L~~H~k~h  241 (643)
                      ..+-..||...
T Consensus       233 leavr~HM~~K  243 (390)
T KOG2785|consen  233 LEAVRAHMRDK  243 (390)
T ss_pred             cHHHHHHHhhc
Confidence            88889999765

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=81.74  E-value=1.1  Score=29.78  Aligned_cols=20  Identities=35%  Similarity=0.908  Sum_probs=12.5

Q ss_pred             ecC-CCCCcCChHHHHHHHHHh
Q 006487          176 RCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       176 ~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      .|. |++.| ..+.|.+|++++
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~~C   24 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEKIC   24 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHHhc
Confidence            466 66666 456666666654

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=80.26  E-value=0.77  Score=46.75  Aligned_cols=51  Identities=20%  Similarity=0.302  Sum_probs=42.0

Q ss_pred             CCCCCCCCCCCCCCCChhhhhcCccccCCCCccccCcccccccCchhHHhH-hhhc
Q 006487           40 PPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLH-RRGH   94 (643)
Q Consensus        40 ~p~~~~c~~cg~~~~~~~~l~~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H-~r~H   94 (643)
                      ...+.+|..|...|.+.+.|..|++.    |-|+|.+|-|..-+---|..| +.+|
T Consensus         7 k~~kpwcwycnrefddekiliqhqka----khfkchichkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen    7 KVDKPWCWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             ccCCceeeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehhhhh
Confidence            34567899999999999999999876    569999999998888888888 4445

>TIGR00622 ssl1 transcription factor ssl1

Probab=80.25  E-value=2.8  Score=38.33  Aligned_cols=47  Identities=15%  Similarity=0.348  Sum_probs=32.3

Q ss_pred             ccccccccccchhhhhhcccccCCceeecC-CCCCcCChHHHHHHHHHh
Q 006487          149 KCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       149 kC~~CgKsF~~ks~L~~H~rthgeKpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      .|--|.+.|........- +......|+|+ |...|-..-+.-.|..+|
T Consensus        57 ~C~~C~~~f~~~~~~~~~-~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        57 FCFGCQGPFPKPPVSPFD-ELKDSHRYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             cccCcCCCCCCccccccc-ccccccceeCCCCCCccccccchhhhhhcc
Confidence            488888888754321100 01334579999 999998888888888777

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	643
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		4e-08
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		1e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 55  DAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYL 114
           D + +    +T      + C  C K F +  NL+ H+R H                K Y 
Sbjct: 61  DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH-------------TGEKPYA 107
Query: 115 CPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTR 173
           CPE  C      ++   L  ++ H     GEK +KC +C K ++ + +   H +T  G +
Sbjct: 108 CPE--C-----GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEK 160
Query: 174 EYRC-DCGTLFSRRDSFITHR 193
            Y+C +CG  FSRRD+   H+
Sbjct: 161 PYKCPECGKSFSRRDALNVHQ 181

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT- 169
           K Y CPE  C      ++    + ++KH     GEK +KC +C K ++  SD + H +T 
Sbjct: 3   KPYKCPE--C-----GKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH 55
Query: 170 CGTREYRC-DCGTLFSRRDSFITHR 193
            G + Y+C +CG  FSR D    H+
Sbjct: 56  TGEKPYKCPECGKSFSRSDHLSRHQ 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	643
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-09
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-05
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-08
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	8e-07
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	3e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	7e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-04
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	5e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-05
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-04
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-05
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	8e-04
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	8e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-04
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	1e-04
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-04
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-04
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	6e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	5e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	7e-04

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 26/128 (20%)

Query: 72  FICE--VCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRAL 129
           F+C    CNK + +  +LQ+H R H          T E   K Y C    C      R  
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKH----------TGE---KPYQCDFKDC-----ERRF 48

Query: 130 GDLTGIKKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC---DCGTLFS 184
                +K+H  R+H G K ++C+ C ++++     K H++T  G + + C    C   F+
Sbjct: 49  SRSDQLKRH-QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107

Query: 185 RRDSFITH 192
           R D  + H
Sbjct: 108 RSDELVRH 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH-GEKKWKCEK--CSKRYAVQSDWKAHS 167
           + ++C  P C     ++    L+ ++ H SRKH GEK ++C+   C +R++     K H 
Sbjct: 5   RPFMCAYPGC-----NKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ 58

Query: 168 KT-CGTREYRCD-CGTLFSRRDSFITHR 193
           +   G + ++C  C   FSR D   TH 
Sbjct: 59  RRHTGVKPFQCKTCQRKFSRSDHLKTHT 86

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 21/96 (21%)

Query: 77  CNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIK 136
           C K + R +NL+ H R H          T E   K Y+C    C     S+A  + +   
Sbjct: 75  CRKSYSRLENLKTHLRSH----------TGE---KPYMCEHEGC-----SKAFSNASDRA 116

Query: 137 KHYSRKH-GEKKWKCEK--CSKRYAVQSDWKAHSKT 169
           KH +R H  EK + C+   C+KRY   S  + H KT
Sbjct: 117 KHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 20/126 (15%)

Query: 74  CEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLT 133
            + C++ F  ++ L  H    ++         +    K ++C           R      
Sbjct: 6   WDGCSQEFDSQEQLVHHINSEHI-------HGER---KEFVCHW--GGCSRELRPFKAQY 53

Query: 134 GIKKHYSRKH-GEKKWKC--EKCSKRYAVQSDWKAHSKT-CGTREYRC---DCGTLFSRR 186
            +  H  R+H GEK  KC  E C K Y+   + K H ++  G + Y C    C   FS  
Sbjct: 54  MLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNA 112

Query: 187 DSFITH 192
                H
Sbjct: 113 SDRAKH 118

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 46.3 bits (111), Expect = 8e-07
 Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 21/95 (22%)

Query: 72  FICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGD 131
           F C +C + F R  +L  H R H          T E   K + C    C      R    
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTH----------TGE---KPFACDI--C-----GRKFAR 43

Query: 132 LTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAH 166
               K+H            +K  +  +     +  
Sbjct: 44  SDERKRH-RDIQHILPILEDKVEELLSKNYHLENE 77

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 20/96 (20%)

Query: 74  CEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLT 133
            E C K F++   L++H+  H          T++     Y CP   C      +     +
Sbjct: 6   FENCGKAFKKHNQLKVHQFSH----------TQQ---LPYECPHEGC-----DKRFSLPS 47

Query: 134 GIKKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSK 168
            +K+H  + H G    K + CS      + +  H  
Sbjct: 48  RLKRHE-KVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 22/101 (21%)

Query: 72  FICEV--CNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRAL 129
             C+   C K + +  +L+ H R H          T E   K Y C    C         
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAHLRTH----------TGE---KPYKCTWEGC-----DWRF 57

Query: 130 GDLTGIKKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT 169
                + +HY RKH G K ++C  C++ ++       H K 
Sbjct: 58  ARSDELTRHY-RKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 11/97 (11%)

Query: 102 QKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH-GEKKWKC--EKCSKRYA 158
                  KR+++ C  P C     ++     + +K H  R H GEK +KC  E C  R+A
Sbjct: 5   SSGPDLEKRRIHYCDYPGC-----TKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFA 58

Query: 159 VQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHR 193
              +   H +   G + ++C  C   FSR D    H 
Sbjct: 59  RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 31/126 (24%), Positives = 39/126 (30%), Gaps = 26/126 (20%)

Query: 75  EVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTG 134
           E C KGF    +L  H   H          T E   K + C    C              
Sbjct: 48  EGCEKGFTSLHHLTRHSLTH----------TGE---KNFTCDSDGC-----DLRFTTKAN 89

Query: 135 IKKHYSRKHGEKKW--KC--EKCSKRYAVQSDWKAHSKT-CGTREYRC---DCGTLFSRR 186
           +KKH++R H  K     C  E C K +   +  K H  +      Y C    C   FS  
Sbjct: 90  MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLP 149

Query: 187 DSFITH 192
                H
Sbjct: 150 SRLKRH 155

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 32/134 (23%), Positives = 48/134 (35%), Gaps = 32/134 (23%)

Query: 71  RFICEV--CNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRA 128
           R+IC    C   + +   LQ H   H          T E   K + C E  C      + 
Sbjct: 12  RYICSFADCGAAYNKNWKLQAHLCKH----------TGE---KPFPCKEEGC-----EKG 53

Query: 129 LGDLTGIKKHYSRKH-GEKKWKCE--KCSKRYAVQSDWKAHSKTCGTRE----YRC---D 178
              L  + +H S  H GEK + C+   C  R+  +++ K H            Y C   +
Sbjct: 54  FTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR-FHNIKICVYVCHFEN 111

Query: 179 CGTLFSRRDSFITH 192
           CG  F + +    H
Sbjct: 112 CGKAFKKHNQLKVH 125

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 27/123 (21%)

Query: 72  FICE--VCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRAL 129
           F C+   C+  F  + N++ H                  K  VY+C    C      +A 
Sbjct: 73  FTCDSDGCDLRFTTKANMKKHFNRF----------HNI-KICVYVCHFENC-----GKAF 116

Query: 130 GDLTGIKKHYSRKH-GEKKWKC--EKCSKRYAVQSDWKAHSKT-CGTREYRCD----CGT 181
                +K H    H  +  ++C  E C KR+++ S  K H K   G    + D     G 
Sbjct: 117 KKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGK 175

Query: 182 LFS 184
            ++
Sbjct: 176 TWT 178

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 43.3 bits (103), Expect = 5e-06
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 141 RKH-GEKKWKCEKCSKRYAVQSDWKAHSKTC---GTREYRC-DCGTLFSRRDSFITHR 193
               GE  ++C+ CS+ Y   S++  H  T      + Y C  C   F+R+D+   H 
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 31/109 (28%), Positives = 40/109 (36%), Gaps = 23/109 (21%)

Query: 74  CEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLT 133
           C    K F+ +  L  H R H          T E   K + CP P C      +      
Sbjct: 65  CPREGKSFKAKYKLVNHIRVH----------TGE---KPFPCPFPGC-----GKIFARSE 106

Query: 134 GIKKHYSRKH-GEKKWKC--EKCSKRYAVQSDWKAHSKT-CGTREYRCD 178
            +K H  R H GEK +KC  E C +R+A  SD K H       +     
Sbjct: 107 NLKIHK-RTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 21/129 (16%)

Query: 72  FICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPS-RALG 130
              + C++ F     L  H                  ++  ++C    C     S +A  
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTME---------HVGGPEQNNHVCYWEECPREGKSFKAKY 76

Query: 131 DLTGIKKHYSRKH-GEKKWKC--EKCSKRYAVQSDWKAHSKT-CGTREYRC---DCGTLF 183
            L     H  R H GEK + C    C K +A   + K H +T  G + ++C    C   F
Sbjct: 77  KL---VNH-IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132

Query: 184 SRRDSFITH 192
           +       H
Sbjct: 133 ANSSDRKKH 141

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 43.2 bits (103), Expect = 1e-05
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT 169
           + Y CP  +C      R       + +H  R H G+K ++C  C + ++       H +T
Sbjct: 3   RPYACPVESC-----DRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56

Query: 170 -CGTREYRCD-CGTLFSRRDSFITHR 193
             G + + CD CG  F+R D    H 
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHT 82

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 24/101 (23%)

Query: 72  FICEV--CNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRAL 129
           + C V  C++ F +  +L  H R H          T +   K + C    C      R  
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIH----------TGQ---KPFQCRI--C-----MRNF 44

Query: 130 GDLTGIKKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT 169
                +  H  R H GEK + C+ C +++A   + K H+K 
Sbjct: 45  SRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRHTKI 84

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT- 169
           +   CP   C     ++   D + ++KH    HG +   C +C K +   S  K H    
Sbjct: 4   RTIACPHKGC-----TKMFRDNSAMRKHL-HTHGPRVHVCAECGKAFVESSKLKRHQLVH 57

Query: 170 CGTREYRC---DCGTLFSRRDSFITH 192
            G + ++C    CG  FS   +  TH
Sbjct: 58  TGEKPFQCTFEGCGKRFSLDFNLRTH 83

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 29/126 (23%)

Query: 74  CEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLT 133
            + C K F+    ++ H   H                +V++C E  C      +A  + +
Sbjct: 10  HKGCTKMFRDNSAMRKHLHTHG--------------PRVHVCAE--C-----GKAFVESS 48

Query: 134 GIKKHYSRKH-GEKKWKC--EKCSKRYAVQSDWKAHSKT-CGTREYRC---DCGTLFSRR 186
            +K+H    H GEK ++C  E C KR+++  + + H +   G R Y C    C   F++ 
Sbjct: 49  KLKRH-QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQS 107

Query: 187 DSFITH 192
            +  +H
Sbjct: 108 TNLKSH 113

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 20/97 (20%)

Query: 74  CEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLT 133
              C K + +  +L+ H R H          T E   K Y C    C             
Sbjct: 10  YAGCGKTYTKSSHLKAHLRTH----------TGE---KPYHCDWDGC-----GWKFARSD 51

Query: 134 GIKKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT 169
            + +HY RKH G + ++C+KC + ++       H K 
Sbjct: 52  ELTRHY-RKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 141 RKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD---CGTLFSRRDSFITHR 193
           ++          C K Y   S  KAH +T  G + Y CD   CG  F+R D    H 
Sbjct: 1   KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 136 KKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT---CGTREYRCD-CGTLFSRRDSFI 190
                R H GEK ++C  C  R+      K H          ++ C  C T+ +R+    
Sbjct: 4   GSSG-RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62

Query: 191 TH 192
            H
Sbjct: 63  VH 64

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 141 RKH-GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRA 194
                    KC +CS   + ++  + H +  C  R ++C+ C     +  +   H  
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 144 GEKKWKCEKCSKRYAVQSDWKAHSKT----CGTREYRCD-CGTLFSRRDSFITHR 193
           G    +CE C      ++    H +          + C+ CG  F + DS   HR
Sbjct: 4   GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 14/98 (14%), Positives = 24/98 (24%), Gaps = 45/98 (45%)

Query: 72  FICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGD 131
             CE+C    +++ +L  H+R H                                     
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKH------------------------------------- 30

Query: 132 LTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT 169
                   +      ++ CE C KR+       AH   
Sbjct: 31  --------AETVAALRFPCEFCGKRFEKPDSVAAHRSK 60

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 132 LTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFI 190
            +G   H   +   +   C+ C          K H   CG R   C  CG     +D   
Sbjct: 2   SSGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHEDYCGARTELCGNCGRNVLVKD-LK 59

Query: 191 THRAFCD 197
           TH   C 
Sbjct: 60  THPEVCG 66

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 26/124 (20%)

Query: 74  CEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLT 133
           C  C K F  +++L  H+R H          T E   K Y CPE  C      ++     
Sbjct: 52  CPECGKSFSDKKDLTRHQRTH----------TGE---KPYKCPE--C-----GKSFSQRA 91

Query: 134 GIKKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSKTCGTRE--YRC-DCGTLFSRRDSF 189
            ++ H  R H GEK + C +C K ++  +  +AH +T  T E  Y+C +CG  FSR D+ 
Sbjct: 92  NLRAHQ-RTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPECGKSFSREDNL 149

Query: 190 ITHR 193
            TH+
Sbjct: 150 HTHQ 153

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 24/122 (19%)

Query: 74  CEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLT 133
           C  C K F R  +L  H+R H          T E   K Y CPE  C      ++  D  
Sbjct: 24  CPECGKSFSRSDHLAEHQRTH----------TGE---KPYKCPE--C-----GKSFSDKK 63

Query: 134 GIKKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC-DCGTLFSRRDSFI 190
            + +H  R H GEK +KC +C K ++ +++ +AH +T  G + Y C +CG  FS+     
Sbjct: 64  DLTRHQ-RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR 122

Query: 191 TH 192
            H
Sbjct: 123 AH 124

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 40.5 bits (96), Expect = 6e-04
 Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 24/122 (19%)

Query: 74  CEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLT 133
           C  C K F +  NL+ H+R H          T E   K Y CPE  C      ++   L 
Sbjct: 80  CPECGKSFSQRANLRAHQRTH----------TGE---KPYACPE--C-----GKSFSQLA 119

Query: 134 GIKKHYSRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC-DCGTLFSRRDSFI 190
            ++ H  R H GEK +KC +C K ++ + +   H +T  G + Y+C +CG  FSRRD+  
Sbjct: 120 HLRAHQ-RTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALN 178

Query: 191 TH 192
            H
Sbjct: 179 VH 180

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 23/90 (25%)

Query: 72  FICEV--CNKGFQREQNLQLHRR-GHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRA 128
             C+   C + F   Q L  H++  H            +   K + CPEP C      ++
Sbjct: 8   MPCDFPGCGRIFSNRQYLNHHKKYQH----------IHQ---KSFSCPEPAC-----GKS 49

Query: 129 LGDLTGIKKHYSRKH-GEKKWKCEKCSKRY 157
                 +K+H  + H   + + CE      
Sbjct: 50  FNFKKHLKEH-MKLHSDTRDYICEFSGPSS 78

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 37.4 bits (86), Expect = 7e-04
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 147 KWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRA 194
           K+ CE+C  R    S  K H +T    R Y C  C   F  + +   H  
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	643
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.96
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.91
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.88
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.88
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.85
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.83
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.82
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.81
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.8
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.8
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.79
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.78
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.77
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.77
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.74
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.66
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.65
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.65
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.64
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.64
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.64
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.63
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.61
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.61
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.6
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.6
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.59
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.59
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.57
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.57
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.56
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.53
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.5
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.5
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.49
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.49
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.48
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.42
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.42
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.41
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.4
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.39
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.38
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.37
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.36
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.35
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.35
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.34
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.32
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.31
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.31
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.29
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.28
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.27
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.27
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.26
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.23
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.23
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.21
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.2
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.19
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.18
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.17
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.16
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.15
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.13
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.12
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.11
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.11
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.09
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.01
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.0
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.99
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.99
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.99
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.95
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.95
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.93
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.89
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.86
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.84
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.84
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.84
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.83
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.83
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.83
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.83
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.83
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.82
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.82
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.82
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.82
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.82
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.81
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.81
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.81
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.81
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.81
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.81
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.81
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.81
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.81
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.81
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.81
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.8
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.8
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.8
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.8
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.79
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.79
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.79
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.79
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.79
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.79
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.78
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.78
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.77
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.77
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.77
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.77
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.77
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.77
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.77
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.76
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.76
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.76
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.73
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.73
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.72
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.72
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.72
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.72
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.71
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.71
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.71
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.7
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.7
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.7
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.7
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.7
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.7
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.7
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.69
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.69
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.69
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.69
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.69
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.69
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.69
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.69
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.68
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.68
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.68
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.68
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.68
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.68
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.68
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.67
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.67
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.67
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.67
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.67
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.67
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.67
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.67
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.67
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.67
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.67
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.66
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.66
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.66
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.66
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.66
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.66
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.66
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.66
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.66
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.66
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.66
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.66
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.66
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.65
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.65
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.65
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.65
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.65
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.65
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.65
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.65
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.65
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.65
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.65
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.65
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.65
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.64
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.64
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.64
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.64
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.64
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.64
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.64
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.63
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.63
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.63
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.63
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.62
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.62
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.62
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.62
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.61
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.61
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.61
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.61
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.6
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.6
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.6
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.59
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.59
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.59
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.58
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.58
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.58
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.58
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.57
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.56
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.56
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.55
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.54
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.54
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.54
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.54
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.54
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.54
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.53
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.53
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.53
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.53
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.53
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.53
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.52
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.52
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.52
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.52
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.51
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.51
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.51
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.5
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.5
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.5
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.49
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.49
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.48
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.47
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.47
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.47
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.47
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.46
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.46
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.46
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.46
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.45
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.45
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.44
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.44
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.43
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.42
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.42
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.41
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.41
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.41
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.4
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.39
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.39
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.39
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.37
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.36
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.34
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.34
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.34
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.33
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.29
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.21
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.2
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.14
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.13
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.06
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	97.98
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	97.97
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.96
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	97.95
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	97.94
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	97.84
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.83
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.78
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.77
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	97.77
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.74
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	97.74
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.74
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.7
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.7
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.7
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.67
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.67
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.64
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.63
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.63
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.62
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.61
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	97.6
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.58
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.56
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.56
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.55
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.54
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.54
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.52
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.5
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.48
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.48
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.46
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.44
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.41
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.4
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.39
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.38
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.37
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.36
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.35
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.31
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.31
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.3
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.39
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.27
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.37
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.26
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.26
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.25
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.24
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.3
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.26
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.14
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.11
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.17
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.07
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.07
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.07
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.03
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.02
1paa_A	30	Yeast transcription factor ADR1; transcription reg	96.99
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	96.99
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	96.97
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	96.96
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	96.94
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	96.94
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	96.91
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	95.81
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.66
1paa_A	30	Yeast transcription factor ADR1; transcription reg	96.63
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	96.62
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.22
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.15
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.91
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	95.7
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.17
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.38
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.16
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	93.15
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	92.93
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	92.03
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	90.98
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	81.37
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	80.81

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.96  E-value=1.9e-29  Score=244.26  Aligned_cols=171  Identities=24%  Similarity=0.503  Sum_probs=144.2

Q ss_pred             CCCCCCCCCCCCCCCChhhhhcCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCC
Q 006487           40 PPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPT  119 (643)
Q Consensus        40 ~p~~~~c~~cg~~~~~~~~l~~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~  119 (643)
                      ...++.|..|++.|.....|..|.+.|.++++|+|++|++.|.....|..|++.|+             ++++|.|++| 
T Consensus        18 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-   83 (190)
T 2i13_A           18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT-------------GEKPYKCPEC-   83 (190)
T ss_dssp             -------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHH-------------CCCCEECTTT-
T ss_pred             CCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcC-------------CCCCccCccc-
Confidence            34568999999999999999999999999999999999999999999999999985             7889999998 


Q ss_pred             ccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCChHHHHHHHHHhh
Q 006487          120 CVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       120 C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                            ++.|.....|..|+++|+++++|.|++|++.|.....|..|+++ +++++|.|+ |++.|..+..|.+|+++| 
T Consensus        84 ------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H-  156 (190)
T 2i13_A           84 ------GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH-  156 (190)
T ss_dssp             ------CCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHH-
T ss_pred             ------CCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhc-
Confidence                  99999999999999999999999999999999999999999999 899999999 999999999999999999 


Q ss_pred             hhhhhhhhcCCCccccCCCCccCCccccccccccchhhhhhhhccCCCCcc
Q 006487          198 ALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQSG  248 (643)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~k~y~C~~~C~~~fs~~s~L~~H~k~hh~~~~p~  248 (643)
                                     .++++|.|+. |++.|.....|..|+++| .+++||
T Consensus       157 ---------------~~~~~~~C~~-C~~~f~~~~~L~~H~~~H-~~~k~~  190 (190)
T 2i13_A          157 ---------------TGEKPYKCPE-CGKSFSRRDALNVHQRTH-TGKKTS  190 (190)
T ss_dssp             ---------------HCCCCEECTT-TCCEESSHHHHHHHHTTC-------
T ss_pred             ---------------CCCCCeECCC-CCCccCCHHHHHHHHHhc-CCCCCC
Confidence                           5778999999 999999999999999987 445543

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=2.8e-27  Score=229.07  Aligned_cols=163  Identities=25%  Similarity=0.494  Sum_probs=129.4

Q ss_pred             hhhhhcCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhH
Q 006487           56 AEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGI  135 (643)
Q Consensus        56 ~~~l~~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L  135 (643)
                      ...|..|...+.++++|.|++|++.|.....|..|++.|.             ++++|.|++|       ++.|.....|
T Consensus         6 ~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l   65 (190)
T 2i13_A            6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHT-------------GEKPYKCPEC-------GKSFSDKKDL   65 (190)
T ss_dssp             -------------------------CCSSHHHHHGGGCC----------------CCEECTTT-------CCEESSHHHH
T ss_pred             hccchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcC-------------CCCCccCCCc-------CchhCCHHHH
Confidence            3456778888999999999999999999999999999985             7889999999       9999999999


Q ss_pred             HhHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCChHHHHHHHHHhhhhhhhhhhcCCCcccc
Q 006487          136 KKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDALAQESARHQPSLSAI  213 (643)
Q Consensus       136 ~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L~~H~~~Hh~~~~~~~~~~~~~~~~  213 (643)
                      .+|+++|+++++|+|++|++.|..+..|..|+++ +++++|.|+ |++.|..+..|.+|+++|                .
T Consensus        66 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h----------------~  129 (190)
T 2i13_A           66 TRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH----------------T  129 (190)
T ss_dssp             HHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHH----------------H
T ss_pred             HHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHh----------------C
Confidence            9999999999999999999999999999999999 899999999 999999999999999998                5


Q ss_pred             CCCCccCCccccccccccchhhhhhhhccCCCCcccccccCCC
Q 006487          214 GSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQSGDILCLGGS  256 (643)
Q Consensus       214 ~~k~y~C~~~C~~~fs~~s~L~~H~k~hh~~~~p~~c~~cg~a  256 (643)
                      ++++|.|+. |++.|.....|..|++.| .+++||.|..|++.
T Consensus       130 ~~~~~~C~~-C~~~f~~~~~L~~H~~~H-~~~~~~~C~~C~~~  170 (190)
T 2i13_A          130 GEKPYKCPE-CGKSFSREDNLHTHQRTH-TGEKPYKCPECGKS  170 (190)
T ss_dssp             CCCCEECTT-TCCEESCHHHHHHHHHHH-HCCCCEECTTTCCE
T ss_pred             CCCCeECCC-CCcccCCHHHHHHHHHhc-CCCCCeECCCCCCc
Confidence            778999999 999999999999999987 56789999999986

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.91  E-value=5.2e-25  Score=213.11  Aligned_cols=167  Identities=20%  Similarity=0.311  Sum_probs=149.2

Q ss_pred             CCCCCCCCC--CCCCCCCCChhhhhcCccccCCCCcccc--CcccccccCchhHHhHhhhcCCCccccccccccccCcee
Q 006487           38 VPPPQKKKR--NQPGTPNPDAEVIALSPKTLMATNRFIC--EVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVY  113 (643)
Q Consensus        38 ~~~p~~~~c--~~cg~~~~~~~~l~~h~k~h~~~kpy~C--~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y  113 (643)
                      +....++.|  ..|++.|.....|..|.++|.++++|+|  ++|++.|.+...|..|+++|.             ++++|
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~   73 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT-------------GEKNF   73 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTT-------------TCCCE
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHcc-------------CCCce
Confidence            345677889  7899999999999999999999999999  889999999999999999995             78999


Q ss_pred             eCC--CCCccCCCCCCcccChhhHHhHh-hhc-cCCccccc--ccccccccchhhhhhcccc-cCCceeec--C-CCCCc
Q 006487          114 LCP--EPTCVHHDPSRALGDLTGIKKHY-SRK-HGEKKWKC--EKCSKRYAVQSDWKAHSKT-CGTREYRC--D-CGTLF  183 (643)
Q Consensus       114 ~C~--~C~C~~~~~~k~F~~~s~L~~H~-r~H-~geKpfkC--~~CgKsF~~ks~L~~H~rt-hgeKpy~C--~-CgK~F  183 (643)
                      .|+  .|       ++.|.....|.+|+ +.| .++++|+|  ++|++.|.....|..|+++ +++++|.|  + |++.|
T Consensus        74 ~C~~~~C-------~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F  146 (190)
T 1tf6_A           74 TCDSDGC-------DLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRF  146 (190)
T ss_dssp             ECCSSSC-------CCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBC
T ss_pred             eCCCCCC-------CCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchh
Confidence            999  66       99999999999999 566 46889999  8999999999999999999 78999999  5 99999


Q ss_pred             CChHHHHHHHHHhhhhhhhhhhcCCCccccCCCCccCCc--cccccccccchhhhhhhhccC
Q 006487          184 SRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTN--NMALGLSQVGPQLSSIKDHHQ  243 (643)
Q Consensus       184 ~~ks~L~~H~~~Hh~~~~~~~~~~~~~~~~~~k~y~C~~--~C~~~fs~~s~L~~H~k~hh~  243 (643)
                      .++..|.+|+++|+                +   |.|..  .|++.|.....|..|+++|+.
T Consensus       147 ~~~~~L~~H~~~H~----------------~---~~C~~~~~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          147 SLPSRLKRHEKVHA----------------G---YPCKKDDSCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             SSHHHHHHHHTSSC----------------S---CCCCSTTTCCCCCSCHHHHHHHHTTCC-
T ss_pred             cCHHHHHHHHHHhC----------------C---CcCCCCCcCCCccccHHHHHHHHHhhcC
Confidence            99999999999884                3   66654  399999999999999999853

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.88  E-value=6e-23  Score=198.58  Aligned_cols=151  Identities=20%  Similarity=0.356  Sum_probs=135.8

Q ss_pred             cCCCCcccc--CcccccccCchhHHhHhhhcCCCccccccccccccCceeeC--CCCCccCCCCCCcccChhhHHhHhhh
Q 006487           66 LMATNRFIC--EVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLC--PEPTCVHHDPSRALGDLTGIKKHYSR  141 (643)
Q Consensus        66 h~~~kpy~C--~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C--~~C~C~~~~~~k~F~~~s~L~~H~r~  141 (643)
                      ....++|+|  +.|++.|.....|..|++.|.             ++++|.|  ++|       ++.|.....|.+|+++
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~   66 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHT-------------GEKPFPCKEEGC-------EKGFTSLHHLTRHSLT   66 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHHHHHHHHH-------------CCCSSCCSSTTC-------CCCCSSHHHHHHHHTT
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHHHHHHhcC-------------CCCCccCCCCCC-------ChhhCCHHHHHHHHHH
Confidence            345688999  689999999999999999985             7899999  777       9999999999999999


Q ss_pred             ccCCcccccc--cccccccchhhhhhccc-cc--CCceeec--C-CCCCcCChHHHHHHHHHhhhhhhhhhhcCCCcccc
Q 006487          142 KHGEKKWKCE--KCSKRYAVQSDWKAHSK-TC--GTREYRC--D-CGTLFSRRDSFITHRAFCDALAQESARHQPSLSAI  213 (643)
Q Consensus       142 H~geKpfkC~--~CgKsF~~ks~L~~H~r-th--geKpy~C--~-CgK~F~~ks~L~~H~~~Hh~~~~~~~~~~~~~~~~  213 (643)
                      |+++++|.|+  .|++.|..+..|..|++ .|  ++++|.|  + |++.|..+..|.+|+++|                .
T Consensus        67 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H----------------~  130 (190)
T 1tf6_A           67 HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH----------------T  130 (190)
T ss_dssp             TTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGG----------------S
T ss_pred             ccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHh----------------C
Confidence            9999999999  89999999999999994 45  5789999  8 999999999999999998                6


Q ss_pred             CCCCccCC-ccccccccccchhhhhhhhccCCCCcccccc---cCCC
Q 006487          214 GSHLYAST-NNMALGLSQVGPQLSSIKDHHQTNQSGDILC---LGGS  256 (643)
Q Consensus       214 ~~k~y~C~-~~C~~~fs~~s~L~~H~k~hh~~~~p~~c~~---cg~a  256 (643)
                      ++++|.|+ ..|++.|.....|..|+++|+.    +.|..   |++.
T Consensus       131 ~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~----~~C~~~~~C~~~  173 (190)
T 1tf6_A          131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAG----YPCKKDDSCSFV  173 (190)
T ss_dssp             SSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS----CCCCSTTTCCCC
T ss_pred             CCCCccCCCCCCCchhcCHHHHHHHHHHhCC----CcCCCCCcCCCc
Confidence            78899996 3599999999999999998854    88888   8876

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=5.9e-23  Score=191.46  Aligned_cols=146  Identities=21%  Similarity=0.386  Sum_probs=129.5

Q ss_pred             CCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCccc
Q 006487           69 TNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKW  148 (643)
Q Consensus        69 ~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpf  148 (643)
                      |.+|+|+.|++.|.+...|..|++.++          .+.++++|.|++|+|  ..|++.|.....|.+|+++|+++++|
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h----------~h~~~~~~~C~~c~C--~~c~~~f~~~~~l~~H~~~h~~~~~~   68 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEH----------IHGERKEFVCHWGGC--SRELRPFKAQYMLVVHMRRHTGEKPH   68 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHT----------SSSCSSCCCCCBTTC--TTTTCCCSSHHHHHHHTHHHHCCCCC
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhc----------cCCCCcceeCCCCCc--cchhhhhhhHHHHHHHHHhcCCCCCc
Confidence            457999999999999999999998321          124788999998755  45579999999999999999999999


Q ss_pred             cccc--ccccccchhhhhhcccc-cCCceeecC---CCCCcCChHHHHHHH-HHhhhhhhhhhhcCCCccccCCCCccCC
Q 006487          149 KCEK--CSKRYAVQSDWKAHSKT-CGTREYRCD---CGTLFSRRDSFITHR-AFCDALAQESARHQPSLSAIGSHLYAST  221 (643)
Q Consensus       149 kC~~--CgKsF~~ks~L~~H~rt-hgeKpy~C~---CgK~F~~ks~L~~H~-~~Hh~~~~~~~~~~~~~~~~~~k~y~C~  221 (643)
                      +|++  |++.|..+..|..|+++ +++++|.|+   |++.|.++..|.+|+ ++|                .++++|.|+
T Consensus        69 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H----------------~~~~~~~C~  132 (155)
T 2gli_A           69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH----------------SNEKPYVCK  132 (155)
T ss_dssp             CCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTT----------------CSCCCEECC
T ss_pred             cCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhc----------------CCCCCeeCC
Confidence            9986  99999999999999999 789999996   999999999999998 677                678899997


Q ss_pred             c-cccccccccchhhhhhhhcc
Q 006487          222 N-NMALGLSQVGPQLSSIKDHH  242 (643)
Q Consensus       222 ~-~C~~~fs~~s~L~~H~k~hh  242 (643)
                      . .|++.|.....|..|++.||
T Consensus       133 ~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A          133 LPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             STTTCCEESSHHHHHHHHHHSC
T ss_pred             CCCCccccCCHHHHHHHHHhhc
Confidence            3 59999999999999999986

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=6.7e-22  Score=184.28  Aligned_cols=137  Identities=23%  Similarity=0.412  Sum_probs=125.3

Q ss_pred             CCCCCCCCCCCCChhhhhcCcc---ccCCCCccccCcc-----cccccCchhHHhHhhhcCCCccccccccccccCceee
Q 006487           43 KKKRNQPGTPNPDAEVIALSPK---TLMATNRFICEVC-----NKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYL  114 (643)
Q Consensus        43 ~~~c~~cg~~~~~~~~l~~h~k---~h~~~kpy~C~~C-----gK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~  114 (643)
                      +++|..|++.|.....|..|.+   +|.++++|+|++|     ++.|.....|..|++.|+             ++++|.
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~-------------~~~~~~   69 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT-------------GEKPHK   69 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHH-------------CCCCCC
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcC-------------CCCCcc
Confidence            5789999999999999999998   7889999998753     499999999999999995             789999


Q ss_pred             CCCCCccCCCCCCcccChhhHHhHhhhccCCccccccc--ccccccchhhhhhcc-cc-cCCceeecC---CCCCcCChH
Q 006487          115 CPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEK--CSKRYAVQSDWKAHS-KT-CGTREYRCD---CGTLFSRRD  187 (643)
Q Consensus       115 C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~--CgKsF~~ks~L~~H~-rt-hgeKpy~C~---CgK~F~~ks  187 (643)
                      |++..|     ++.|.....|..|+++|+++++|+|++  |++.|..+..|..|+ ++ .++++|.|+   |++.|.++.
T Consensus        70 C~~~~C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~  144 (155)
T 2gli_A           70 CTFEGC-----RKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPS  144 (155)
T ss_dssp             CCSTTC-----CCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHH
T ss_pred             CCCCCC-----CCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHH
Confidence            986222     999999999999999999999999998  999999999999999 66 688999994   999999999


Q ss_pred             HHHHHHHHhh
Q 006487          188 SFITHRAFCD  197 (643)
Q Consensus       188 ~L~~H~~~Hh  197 (643)
                      .|.+|+++|+
T Consensus       145 ~L~~H~~~hh  154 (155)
T 2gli_A          145 SLRKHVKTVH  154 (155)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHHhhc
Confidence            9999999986

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.83  E-value=4.9e-21  Score=170.30  Aligned_cols=110  Identities=28%  Similarity=0.691  Sum_probs=104.1

Q ss_pred             CCCCccccCc--ccccccCchhHHhHhhhcCCCccccccccccccCceeeCC--CCCccCCCCCCcccChhhHHhHhhhc
Q 006487           67 MATNRFICEV--CNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCP--EPTCVHHDPSRALGDLTGIKKHYSRK  142 (643)
Q Consensus        67 ~~~kpy~C~~--CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~--~C~C~~~~~~k~F~~~s~L~~H~r~H  142 (643)
                      .++++|+|++  |++.|.....|..|++.|.             ++++|.|+  .|       ++.|.....|..|+++|
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h   61 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT-------------GEKPYQCDFKDC-------ERRFSRSDQLKRHQRRH   61 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHH-------------TTCCEECCSTTC-------CCEESSHHHHHHHHHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhC-------------CCCCccCCCCCC-------cCccCCHHHHHHHHHHc
Confidence            4678999997  9999999999999999984             78899999  56       99999999999999999


Q ss_pred             cCCcccccccccccccchhhhhhcccc-cCCceeec--C-CCCCcCChHHHHHHHHHh
Q 006487          143 HGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC--D-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       143 ~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C--~-CgK~F~~ks~L~~H~~~H  196 (643)
                      +++++|+|++|++.|..+..|..|+++ +++++|.|  + |++.|.++..|.+|+++|
T Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999999999999999999999999999 89999999  7 999999999999999976

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=8.6e-21  Score=169.68  Aligned_cols=111  Identities=21%  Similarity=0.507  Sum_probs=102.9

Q ss_pred             CCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhh---cc
Q 006487           67 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSR---KH  143 (643)
Q Consensus        67 ~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~---H~  143 (643)
                      .++++|+|++|++.|.....|..|++.|.             .+++|.|++|       ++.|.....|.+|++.   |.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~~~~~~   62 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHT-------------GEKPFECPKC-------GKCYFRKENLLEHEARNCMNR   62 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHS-------------SCCSCBCTTT-------CCBCSSHHHHHHHHHHCCCCS
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCC-------------CCCCeECCCC-------CchhcCHHHHHHHHhhhhcCC
Confidence            46789999999999999999999999985             7789999998       9999999999999995   57


Q ss_pred             CCcccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCChHHHHHHHHHhh
Q 006487          144 GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       144 geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      .+++|.|++|++.|..+..|..|+++ +++++|.|+ |++.|.++..|.+|++.+|
T Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  118 (124)
T 2dlq_A           63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH  118 (124)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHC
Confidence            78999999999999999999999999 899999999 9999999999999998544

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.81  E-value=3.9e-21  Score=178.00  Aligned_cols=110  Identities=22%  Similarity=0.329  Sum_probs=100.7

Q ss_pred             hhhcCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHh
Q 006487           58 VIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKK  137 (643)
Q Consensus        58 ~l~~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~  137 (643)
                      .+..+..++.++++|+|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|..
T Consensus         9 h~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C-------~k~F~~~~~L~~   68 (133)
T 2lt7_A            9 HDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHS-------------WEKKYPCRYC-------EKVFPLAEYRTK   68 (133)
T ss_dssp             CSSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHH-------------CCSCEECSSS-------SCEESSHHHHHH
T ss_pred             HHhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcC-------------CCCCeeCCcc-------Ceecccccchhh
Confidence            34556778899999999999999999999999999994             8899999999       999999999999


Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCC------ceeecC-CCCCcCChH
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGT------REYRCD-CGTLFSRRD  187 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hge------Kpy~C~-CgK~F~~ks  187 (643)
                      |+++|++++||.|++|++.|..+..|..|+++ |++      ++|+|. |++.|.+..
T Consensus        69 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~  126 (133)
T 2lt7_A           69 HEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQY  126 (133)
T ss_dssp             HHHHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCC
T ss_pred             hccccCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhcc
Confidence            99999999999999999999999999999998 765      469999 999997653

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=6.5e-20  Score=163.97  Aligned_cols=115  Identities=21%  Similarity=0.329  Sum_probs=107.0

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc----cCCceeecC-CCCC
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT----CGTREYRCD-CGTL  182 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt----hgeKpy~C~-CgK~  182 (643)
                      .++++|.|++|       ++.|.....|.+|+++|+++++|+|++|++.|..+..|..|++.    .++++|.|+ |++.
T Consensus         3 ~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~   75 (124)
T 2dlq_A            3 SGSSGVECPTC-------HKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQET   75 (124)
T ss_dssp             CCCSSCCCTTT-------CCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCE
T ss_pred             CCCCCCCCCCC-------CCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCc
Confidence            36789999999       99999999999999999999999999999999999999999984    578999999 9999


Q ss_pred             cCChHHHHHHHHHhhhhhhhhhhcCCCccccCCCCccCCccccccccccchhhhhhhhccCCCC
Q 006487          183 FSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQTNQ  246 (643)
Q Consensus       183 F~~ks~L~~H~~~Hh~~~~~~~~~~~~~~~~~~k~y~C~~~C~~~fs~~s~L~~H~k~hh~~~~  246 (643)
                      |..+..|.+|+++|                .++++|.|+. |++.|.....|..|++.+|.++.
T Consensus        76 f~~~~~l~~H~~~h----------------~~~~~~~C~~-C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           76 FRRRMELRLHMVSH----------------TGEMPYKCSS-CSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             ESSHHHHHHHHHHH----------------SSSCSEECSS-SCCEESSHHHHHHHHHHTSSCSS
T ss_pred             cCCHHHHHHHHHHc----------------CCCCCccCCC-ccchhCCHHHHHHHHHHHCCCCC
Confidence            99999999999998                5788999999 99999999999999998776653

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.80  E-value=4.1e-20  Score=172.65  Aligned_cols=126  Identities=20%  Similarity=0.315  Sum_probs=104.5

Q ss_pred             CCCccccCcccccccCchhHHhHhhh-cCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCc
Q 006487           68 ATNRFICEVCNKGFQREQNLQLHRRG-HNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK  146 (643)
Q Consensus        68 ~~kpy~C~~CgK~F~~~~~L~~H~r~-H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geK  146 (643)
                      ...+|.|++|++.|.+...|..|++. |......     .....+.|.|++|       ++.|.....|..|+++|++++
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~-----~~~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   89 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQ-----NNHVCYWEECPRE-------GKSFKAKYKLVNHIRVHTGEK   89 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTC-----SSCCCCBTTCTTS-------SCCCSSHHHHHHHTHHHHCCC
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCccc-----CCccccccCCCCc-------ccccCCHHHHHHHHHhcCCCC
Confidence            45789999999999999999999987 5311000     0001123788887       999999999999999999999


Q ss_pred             cccccc--ccccccchhhhhhcccc-cCCceeecC---CCCCcCChHHHHHHHHHhhhhhhhhhhcCCCccccCCCCccC
Q 006487          147 KWKCEK--CSKRYAVQSDWKAHSKT-CGTREYRCD---CGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYAS  220 (643)
Q Consensus       147 pfkC~~--CgKsF~~ks~L~~H~rt-hgeKpy~C~---CgK~F~~ks~L~~H~~~Hh~~~~~~~~~~~~~~~~~~k~y~C  220 (643)
                      +|+|++  |++.|..+..|..|+++ +++++|.|+   |++.|.++..|.+|+++|                .++++|.|
T Consensus        90 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H----------------~~~k~~~c  153 (155)
T 2rpc_A           90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH----------------TSDKSGPS  153 (155)
T ss_dssp             SEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTT----------------TSCCCSCS
T ss_pred             cccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHh----------------cCCCCCCC
Confidence            999998  99999999999999999 788999996   999999999999999988                57778877


Q ss_pred             C
Q 006487          221 T  221 (643)
Q Consensus       221 ~  221 (643)
                      .
T Consensus       154 ~  154 (155)
T 2rpc_A          154 S  154 (155)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.79  E-value=5.6e-20  Score=165.11  Aligned_cols=110  Identities=25%  Similarity=0.566  Sum_probs=100.7

Q ss_pred             CCCccccC--cccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487           68 ATNRFICE--VCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus        68 ~~kpy~C~--~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      ++++|+|+  .|++.|.+...|..|++.|              .+++|.|++|       ++.|.....|..|+++|+++
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   60 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH--------------GPRVHVCAEC-------GKAFVESSKLKRHQLVHTGE   60 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG--------------SCCCEECTTT-------CCEESSHHHHHHHGGGTSCC
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc--------------CCCCeECCCC-------CchhCCHHHHHHHHHHcCCC
Confidence            35789999  8999999999999999987              5689999998       99999999999999999999


Q ss_pred             ccccccc--ccccccchhhhhhcccc-cCCceeec--C-CCCCcCChHHHHHHHHHhhh
Q 006487          146 KKWKCEK--CSKRYAVQSDWKAHSKT-CGTREYRC--D-CGTLFSRRDSFITHRAFCDA  198 (643)
Q Consensus       146 KpfkC~~--CgKsF~~ks~L~~H~rt-hgeKpy~C--~-CgK~F~~ks~L~~H~~~Hh~  198 (643)
                      ++|.|.+  |++.|.....|..|+++ +++++|.|  + |++.|.++..|.+|+++|+.
T Consensus        61 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~  119 (124)
T 1ubd_C           61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK  119 (124)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-
T ss_pred             CCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcc
Confidence            9999986  99999999999999999 89999999  6 99999999999999999954

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.78  E-value=3.9e-19  Score=165.99  Aligned_cols=120  Identities=21%  Similarity=0.308  Sum_probs=111.0

Q ss_pred             CCCCCCCCCCCCCCCCChhhhhcCccc-cCCCCc--------cccCcccccccCchhHHhHhhhcCCCcccccccccccc
Q 006487           39 PPPQKKKRNQPGTPNPDAEVIALSPKT-LMATNR--------FICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVK  109 (643)
Q Consensus        39 ~~p~~~~c~~cg~~~~~~~~l~~h~k~-h~~~kp--------y~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~  109 (643)
                      .....++|..|++.|.....|..|.+. |..+++        |.|++|++.|.....|..|+++|+             +
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~   87 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT-------------G   87 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHH-------------C
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcC-------------C
Confidence            345678999999999999999999987 776654        899999999999999999999985             7


Q ss_pred             CceeeCCC--CCccCCCCCCcccChhhHHhHhhhccCCccccccc--ccccccchhhhhhcccc-cCCceeecC
Q 006487          110 RKVYLCPE--PTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEK--CSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       110 ~k~y~C~~--C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~--CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +++|.|++  |       ++.|.....|.+|+++|+++++|+|++  |++.|..+..|.+|+++ +++++|.|.
T Consensus        88 ~~~~~C~~~~C-------~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           88 EKPFPCPFPGC-------GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CCSEECSCTTT-------CCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CCcccCCcCCC-------CCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            89999998  7       999999999999999999999999997  99999999999999999 899999984

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.77  E-value=2.4e-19  Score=159.36  Aligned_cols=112  Identities=21%  Similarity=0.563  Sum_probs=103.6

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccc--cccccccchhhhhhcccc-cCCceeecC-CCCCc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE--KCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLF  183 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~--~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F  183 (643)
                      .++++|.|++.+|     ++.|.....|..|+++|+++++|+|+  .|++.|.....|..|+++ +++++|.|+ |++.|
T Consensus         2 ~~~~~~~C~~~~C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   76 (119)
T 2jp9_A            2 SEKRPFMCAYPGC-----NKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKF   76 (119)
T ss_dssp             CSSCCBCCCSTTS-----CCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             CCCeeeeCCCCCC-----cchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchh
Confidence            3678999997222     99999999999999999999999999  799999999999999999 899999999 99999


Q ss_pred             CChHHHHHHHHHhhhhhhhhhhcCCCccccCCCCccC--Cccccccccccchhhhhhhhc
Q 006487          184 SRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYAS--TNNMALGLSQVGPQLSSIKDH  241 (643)
Q Consensus       184 ~~ks~L~~H~~~Hh~~~~~~~~~~~~~~~~~~k~y~C--~~~C~~~fs~~s~L~~H~k~h  241 (643)
                      ..+..|.+|+++|                .++++|.|  +. |++.|.....|..|+++|
T Consensus        77 ~~~~~l~~H~~~h----------------~~~~~~~C~~~~-C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           77 SRSDHLKTHTRTH----------------TGEKPFSCRWPS-CQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             SCHHHHHHHHHHH----------------HTCCCEECCSTT-CCCEESSHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHh----------------cCCCCeeCCCCC-CccccCCHHHHHHHHhcC
Confidence            9999999999998                57789999  66 999999999999999876

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.77  E-value=1.6e-19  Score=167.18  Aligned_cols=106  Identities=24%  Similarity=0.373  Sum_probs=95.7

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCC
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSR  185 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~  185 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |++.|.+
T Consensus        18 ~Gek~y~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~   90 (133)
T 2lt7_A           18 DGRVYYICIVC-------KRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFIN   90 (133)
T ss_dssp             TTEEEEEETTT-------CCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESS
T ss_pred             CCCcCeECCCC-------CCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCC
Confidence            58999999999       99999999999999999999999999999999999999999999 799999999 9999999


Q ss_pred             hHHHHHHHHHhhhhhhhhhhcCCCccccCCCCccCCcccccccccc
Q 006487          186 RDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQV  231 (643)
Q Consensus       186 ks~L~~H~~~Hh~~~~~~~~~~~~~~~~~~k~y~C~~~C~~~fs~~  231 (643)
                      +..|..|+++||....          ....++|.|.. |.+.|...
T Consensus        91 ~~~L~~H~~~hh~~~p----------~~~~k~~~C~~-C~k~~~~~  125 (133)
T 2lt7_A           91 YQFMSSHIKSVHSQDP----------SGDSKLYRLHP-CRSLQIRQ  125 (133)
T ss_dssp             HHHHHHHHHHHTCCCT----------TSSSCCEEECC-CCSSCCCC
T ss_pred             HHHHHHHhHHhcCCCC----------CCCCCCeecCC-CCchhhhc
Confidence            9999999999975321          23467899998 98887644

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.74  E-value=1e-18  Score=156.78  Aligned_cols=114  Identities=18%  Similarity=0.340  Sum_probs=101.4

Q ss_pred             CCCCCCC--CCCCCCCChhhhhcCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC-
Q 006487           41 PQKKKRN--QPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE-  117 (643)
Q Consensus        41 p~~~~c~--~cg~~~~~~~~l~~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~-  117 (643)
                      +.+++|.  .|++.|.....|..|.++| ++++|.|++|++.|.....|..|++.|+             ++++|.|++ 
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~   68 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHT-------------GEKPFQCTFE   68 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTS-------------CCCCEECCST
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCeeCCCC
Confidence            4568898  8999999999999999999 8899999999999999999999999995             789999986 


Q ss_pred             -CCccCCCCCCcccChhhHHhHhhhccCCcccccc--cccccccchhhhhhcccc-cCCcee
Q 006487          118 -PTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE--KCSKRYAVQSDWKAHSKT-CGTREY  175 (643)
Q Consensus       118 -C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~--~CgKsF~~ks~L~~H~rt-hgeKpy  175 (643)
                       |       ++.|.....|..|+++|+++++|+|+  .|++.|..+..|..|+++ ++++++
T Consensus        69 ~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           69 GC-------GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             TC-------CCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             CC-------cCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence             7       99999999999999999999999996  599999999999999999 778876

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.66  E-value=7.8e-17  Score=140.72  Aligned_cols=90  Identities=24%  Similarity=0.523  Sum_probs=67.0

Q ss_pred             CCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcc
Q 006487           68 ATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKK  147 (643)
Q Consensus        68 ~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKp  147 (643)
                      .+++|.|++|++.|.....|..|++.|+             .+++|.|++|       ++.|.....|.+|+++|+++++
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~   73 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHERTHT-------------DERPYTCDIC-------HKAFRRQDHLRDHRYIHSKEKP   73 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHHHHC-------------CSCCCBCSSS-------CCBCSCHHHHHHHGGGSCCCCT
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCcCCCCc-------cchhCCHHHHHHHHHHhCCCCC
Confidence            3466777777777777777777777774             5677777777       7777777777777777777777


Q ss_pred             cccccccccccchhhhhhcccc-cCCceeec
Q 006487          148 WKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  177 (643)
Q Consensus       148 fkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C  177 (643)
                      |+|++|++.|..+..|..|+++ +++++|.+
T Consensus        74 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           74 FKCQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             TSCSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             eECCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            7777777777777777777777 56676654

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.65  E-value=1.9e-16  Score=138.31  Aligned_cols=83  Identities=18%  Similarity=0.474  Sum_probs=79.6

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCC
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSR  185 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~  185 (643)
                      ..+++|.|++|       ++.|.....|.+|+++|+++++|+|++|++.|.....|..|+++ +++++|.|+ |++.|.+
T Consensus        13 ~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   85 (106)
T 2ee8_A           13 KTKKEFICKFC-------GRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQ   85 (106)
T ss_dssp             CCCCCCBCSSS-------CCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSS
T ss_pred             CCCcCeECCCC-------CCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccC
Confidence            46789999998       99999999999999999999999999999999999999999999 789999999 9999999


Q ss_pred             hHHHHHHHHHhh
Q 006487          186 RDSFITHRAFCD  197 (643)
Q Consensus       186 ks~L~~H~~~Hh  197 (643)
                      +..|.+|+++|+
T Consensus        86 ~~~L~~H~~~H~   97 (106)
T 2ee8_A           86 SRTLAVHKTLHM   97 (106)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhC
Confidence            999999999994

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=7.6e-17  Score=143.06  Aligned_cols=96  Identities=14%  Similarity=0.198  Sum_probs=87.1

Q ss_pred             chhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhh--ccCCcccc-cccccccc--c
Q 006487           84 EQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSR--KHGEKKWK-CEKCSKRY--A  158 (643)
Q Consensus        84 ~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~--H~geKpfk-C~~CgKsF--~  158 (643)
                      ...|+.|+++|+             ++++|.|++|       ++.|.....|..|+++  |..++++. |++|++.|  .
T Consensus         4 ~~~l~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~   63 (115)
T 2dmi_A            4 GSSGKLYGSIFT-------------GASKFRCKDC-------SAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKP   63 (115)
T ss_dssp             CCCCCCCCCCCC-------------CCCSEEBSSS-------SCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSC
T ss_pred             chhhhhheeeeC-------------CCCCEECCcc-------CchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccc
Confidence            456788888884             8899999998       9999999999999999  87777765 99999999  9


Q ss_pred             chhhhhhcccc-cCCceeecC-CCCCcCChHHHHHHHHHhhhh
Q 006487          159 VQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDAL  199 (643)
Q Consensus       159 ~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L~~H~~~Hh~~  199 (643)
                      .+..|..|+++ +++++|.|+ |++.|.++..|.+|+++|+..
T Consensus        64 ~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           64 RKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             CCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             cHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCc
Confidence            99999999999 789999999 999999999999999998653

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.64  E-value=8.8e-17  Score=141.17  Aligned_cols=95  Identities=17%  Similarity=0.202  Sum_probs=84.8

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhh
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYS  140 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r  140 (643)
                      .+.+.|.++++|+|++|++.|.....|..|+++|.               ++|.|++|       ++.|.....|.+|++
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~---------------~~~~C~~C-------~~~f~~~~~l~~H~~   63 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR---------------NAAVCPYC-------SLRFFSPELKQEHES   63 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH---------------HSBCCTTT-------CCCBSSHHHHHHHHH
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCC---------------CCccCCCC-------CCccCCHHHHHHHHH
Confidence            35567888999999999999999999999999873               58999998       999999999999995


Q ss_pred             hccCCcccccccccccccchhhhhhccc-c-cCCceeecC
Q 006487          141 RKHGEKKWKCEKCSKRYAVQSDWKAHSK-T-CGTREYRCD  178 (643)
Q Consensus       141 ~H~geKpfkC~~CgKsF~~ks~L~~H~r-t-hgeKpy~C~  178 (643)
                       |++++||+|++|++.|..+..|..|++ + .++++|.|.
T Consensus        64 -H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           64 -KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             -HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             -cCCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence             999999999999999999999999997 5 678888874

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=5.4e-17  Score=143.99  Aligned_cols=103  Identities=13%  Similarity=0.214  Sum_probs=89.8

Q ss_pred             hhhhhcCccccCCCCccccCcccccccCchhHHhHhhh--cCCCccccccccccccCce-eeCCCCCccCCCCCCcc--c
Q 006487           56 AEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRG--HNLPWKLKQKTTKEVKRKV-YLCPEPTCVHHDPSRAL--G  130 (643)
Q Consensus        56 ~~~l~~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~--H~~~~~~~~~~~~~~~~k~-y~C~~C~C~~~~~~k~F--~  130 (643)
                      ...|..|.++|.++++|+|++|++.|..+..|..|++.  |.             .+++ +.|++|       ++.|  .
T Consensus         4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~-------------~~~~~~~C~~C-------~~~f~f~   63 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHY-------------RDDNHETDNNN-------PKRWSKP   63 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCC-------------BCSCCCCCCCC-------CSCCSSC
T ss_pred             chhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCcc-------------ccCCCccCCCC-------Ccccccc
Confidence            35678899999999999999999999999999999998  53             4444 459998       7777  8


Q ss_pred             ChhhHHhHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          131 DLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       131 ~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      ....|.+|+++|++++||+|++|++.|..+..|..|+++ +......+.
T Consensus        64 ~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~  112 (115)
T 2dmi_A           64 RKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP  112 (115)
T ss_dssp             CCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTCSCCC
T ss_pred             cHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCcccCCCC
Confidence            999999999999999999999999999999999999998 655555443

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.64  E-value=1.6e-16  Score=136.10  Aligned_cols=87  Identities=29%  Similarity=0.509  Sum_probs=58.2

Q ss_pred             CCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCc
Q 006487           67 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK  146 (643)
Q Consensus        67 ~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geK  146 (643)
                      .++++|+|++|++.|.....|..|++.|+             .+++|.|++|       ++.|.....|.+|+++|++++
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   63 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHT-------------GVKPYKCKTC-------DYAAADSSSLNKHLRIHSDER   63 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCC-------------CCCSEECSSS-------CCEESSHHHHHHHHHHSCCCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcC-------------CCCCEeCCCC-------CCccCCHHHHHHHHHHhCCCC
Confidence            44566777777777777777777776663             5566677666       666777777777777666666


Q ss_pred             ccccccccccccchhhhhhcccc-cCCc
Q 006487          147 KWKCEKCSKRYAVQSDWKAHSKT-CGTR  173 (643)
Q Consensus       147 pfkC~~CgKsF~~ks~L~~H~rt-hgeK  173 (643)
                      +|+|++|++.|.....|..|+++ ++++
T Consensus        64 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~   91 (96)
T 2dmd_A           64 PFKCQICPYASRNSSQLTVHLRSHTGDS   91 (96)
T ss_dssp             CEECSSSSCEESSHHHHHHHHTTCCSCC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHhcCCC
Confidence            66666666666666666666666 4444

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=4e-16  Score=137.28  Aligned_cols=88  Identities=25%  Similarity=0.558  Sum_probs=82.8

Q ss_pred             cccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-CCCCcC
Q 006487          107 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFS  184 (643)
Q Consensus       107 ~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~  184 (643)
                      |.++++|.| +|       ++.|.....|.+|+++|+++++|+|++|++.|..+..|..|+++ +++++|.|+ |++.|.
T Consensus         5 h~~~k~~~C-~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   76 (110)
T 2csh_A            5 SSGDKLYPC-QC-------GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFM   76 (110)
T ss_dssp             CCCCCCEEC-TT-------SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEES
T ss_pred             CCCCCCEec-cC-------CCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhc
Confidence            468899999 88       99999999999999999999999999999999999999999999 789999999 999999


Q ss_pred             ChHHHHHHHHHhhhhhhh
Q 006487          185 RRDSFITHRAFCDALAQE  202 (643)
Q Consensus       185 ~ks~L~~H~~~Hh~~~~~  202 (643)
                      ++..|.+|++.|+.....
T Consensus        77 ~~~~l~~H~~~~~~~~~~   94 (110)
T 2csh_A           77 WRDSFHRHVTSCTKSYEA   94 (110)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHccccccc
Confidence            999999999999875544

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.61  E-value=2.8e-16  Score=134.47  Aligned_cols=84  Identities=18%  Similarity=0.320  Sum_probs=80.3

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCC
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSR  185 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~  185 (643)
                      ..+++|.|++|       ++.|.....|.+|+++|+++++|+|++|++.|..+..|..|+++ +++++|.|+ |++.|..
T Consensus         4 ~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   76 (96)
T 2dmd_A            4 GSSGPHKCEVC-------GKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN   76 (96)
T ss_dssp             CCCCCCCBTTT-------TBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESS
T ss_pred             CCCcCeECCCC-------CCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCC
Confidence            46889999999       99999999999999999999999999999999999999999999 789999999 9999999


Q ss_pred             hHHHHHHHHHhhh
Q 006487          186 RDSFITHRAFCDA  198 (643)
Q Consensus       186 ks~L~~H~~~Hh~  198 (643)
                      +..|.+|+++|+.
T Consensus        77 ~~~l~~H~~~h~~   89 (96)
T 2dmd_A           77 SSQLTVHLRSHTG   89 (96)
T ss_dssp             HHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999964

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.61  E-value=4.3e-16  Score=129.08  Aligned_cols=79  Identities=24%  Similarity=0.530  Sum_probs=76.3

Q ss_pred             eeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCChHHH
Q 006487          112 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSF  189 (643)
Q Consensus       112 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L  189 (643)
                      +|.|++|       ++.|.....|..|+++|.++++|+|++|++.|..+..|..|+++ +++++|.|+ |++.|.++..|
T Consensus         1 ~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   73 (82)
T 2kmk_A            1 SFDCKIC-------GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL   73 (82)
T ss_dssp             CEECSSS-------CCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHH
T ss_pred             CccCCCC-------cccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHH
Confidence            5889998       99999999999999999999999999999999999999999999 899999999 99999999999


Q ss_pred             HHHHHHhh
Q 006487          190 ITHRAFCD  197 (643)
Q Consensus       190 ~~H~~~Hh  197 (643)
                      .+|+++|+
T Consensus        74 ~~H~~~H~   81 (82)
T 2kmk_A           74 ITHSRKHT   81 (82)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhhC
Confidence            99999984

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.60  E-value=2.9e-16  Score=137.86  Aligned_cols=80  Identities=21%  Similarity=0.322  Sum_probs=44.6

Q ss_pred             ccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccccCCceeecC-CCCCcC
Q 006487          106 KEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFS  184 (643)
Q Consensus       106 ~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rthgeKpy~C~-CgK~F~  184 (643)
                      .+.++++|.|++|       ++.|.....|..|+++|  +++|+|++|++.|.....|..|++.+++++|.|+ |++.|.
T Consensus        10 ~h~~~~~~~C~~C-------~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~H~~~~~~~C~~C~~~f~   80 (107)
T 1wjp_A           10 PVENKEVYQCRLC-------NAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFK   80 (107)
T ss_dssp             CCCCCCCCBCTTT-------CCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHHHCSTGGGEEGGGTEECS
T ss_pred             ccCCCcCeECCCC-------CCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHHcCCCCCccCccccchhC
Confidence            3445555555555       55555555555555555  3455555555555555555555532455555555 555555


Q ss_pred             ChHHHHHHHH
Q 006487          185 RRDSFITHRA  194 (643)
Q Consensus       185 ~ks~L~~H~~  194 (643)
                      ++..|++|++
T Consensus        81 ~~~~L~~H~~   90 (107)
T 1wjp_A           81 SSFSIWRHQV   90 (107)
T ss_dssp             SHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            5555555554

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.60  E-value=4.5e-16  Score=131.45  Aligned_cols=82  Identities=24%  Similarity=0.596  Sum_probs=77.6

Q ss_pred             CceeeCCC--CCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCC
Q 006487          110 RKVYLCPE--PTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSR  185 (643)
Q Consensus       110 ~k~y~C~~--C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~  185 (643)
                      +++|.|++  |       ++.|.....|.+|+++|+++++|.|++|++.|.....|..|+++ +++++|.|+ |++.|.+
T Consensus         2 ~k~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   74 (90)
T 1a1h_A            2 ERPYACPVESC-------DRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR   74 (90)
T ss_dssp             -CCEECCSSSC-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESS
T ss_pred             CCceECCCCCC-------CCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCC
Confidence            57999984  6       99999999999999999999999999999999999999999999 899999999 9999999


Q ss_pred             hHHHHHHHHHhhh
Q 006487          186 RDSFITHRAFCDA  198 (643)
Q Consensus       186 ks~L~~H~~~Hh~  198 (643)
                      +..|.+|+++|+.
T Consensus        75 ~~~l~~H~~~H~~   87 (90)
T 1a1h_A           75 SDERKRHTKIHLR   87 (90)
T ss_dssp             HHHHHHHHGGGGC
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999999964

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.59  E-value=1.3e-15  Score=130.16  Aligned_cols=69  Identities=28%  Similarity=0.598  Sum_probs=32.6

Q ss_pred             CCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc-cCC--ceeecC-CCCCcCChHHHHHHHH
Q 006487          126 SRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGT--REYRCD-CGTLFSRRDSFITHRA  194 (643)
Q Consensus       126 ~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hge--Kpy~C~-CgK~F~~ks~L~~H~~  194 (643)
                      ++.|.....|.+|+++|+++++|+|++|++.|..+..|..|+++ +++  ++|.|+ |++.|.++..|.+|++
T Consensus        14 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A           14 GKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             CCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHH
Confidence            44444444444444444444444444444444444444444444 332  445554 5555555555555543

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.59  E-value=5.9e-16  Score=130.68  Aligned_cols=86  Identities=23%  Similarity=0.523  Sum_probs=78.2

Q ss_pred             CCCccccC--cccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487           68 ATNRFICE--VCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus        68 ~~kpy~C~--~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      ++++|.|+  .|++.|.....|..|++.|.             .+++|.|++|       ++.|.....|..|+++|+++
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   60 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHT-------------GQKPFQCRIC-------MRNFSRSDHLTTHIRTHTGE   60 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESCHHHHHHHHHHHHCC
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhC-------------CCCCccCCCC-------CcccCCHHHHHHHHHHcCCC
Confidence            36899998  59999999999999999984             7889999998       99999999999999999999


Q ss_pred             cccccccccccccchhhhhhcccc-cCCc
Q 006487          146 KKWKCEKCSKRYAVQSDWKAHSKT-CGTR  173 (643)
Q Consensus       146 KpfkC~~CgKsF~~ks~L~~H~rt-hgeK  173 (643)
                      ++|+|++|++.|..+..|..|+++ ++++
T Consensus        61 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           61 KPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            999999999999999999999999 6665

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.57  E-value=2.1e-15  Score=128.79  Aligned_cols=58  Identities=21%  Similarity=0.413  Sum_probs=29.0

Q ss_pred             ccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC--cccccccccccccchhhhhhccc
Q 006487          104 TTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE--KKWKCEKCSKRYAVQSDWKAHSK  168 (643)
Q Consensus       104 ~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge--KpfkC~~CgKsF~~ks~L~~H~r  168 (643)
                      ...|..+++|.|++|       ++.|.....|.+|+++|+++  ++|+|++|++.|..+..|..|++
T Consensus        27 ~~~h~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A           27 KLSHSGEKPYSCPVC-------GLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             HHHSCSSCSEECSSS-------CCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHH
T ss_pred             HHhcCCCCCCcCCCC-------CCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHH
Confidence            333444445555554       45555555555555555443  45555555555555555555543

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=1.2e-15  Score=134.21  Aligned_cols=85  Identities=20%  Similarity=0.422  Sum_probs=80.7

Q ss_pred             ccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccC
Q 006487           65 TLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG  144 (643)
Q Consensus        65 ~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~g  144 (643)
                      .|.++++|+| +|++.|.....|..|++.|.             .+++|.|++|       ++.|.....|.+|+++|++
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~   62 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHL-------------GLRPYGCGVC-------GKKFKMKHHLVGHMKIHTG   62 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHS-------------CCCSEECTTT-------SCEESSSHHHHHHHTTTCC
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcC-------------CCcCccCCCC-------CcccCCHHHHHHHHHHcCC
Confidence            5788999999 99999999999999999985             7889999998       9999999999999999999


Q ss_pred             Ccccccccccccccchhhhhhccccc
Q 006487          145 EKKWKCEKCSKRYAVQSDWKAHSKTC  170 (643)
Q Consensus       145 eKpfkC~~CgKsF~~ks~L~~H~rth  170 (643)
                      +++|+|++|++.|..+..|..|++++
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~~~   88 (110)
T 2csh_A           63 IKPYECNICAKRFMWRDSFHRHVTSC   88 (110)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHHH
T ss_pred             CCCeeCCCCcchhcCHHHHHHHHHHc
Confidence            99999999999999999999999983

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.56  E-value=1e-15  Score=126.75  Aligned_cols=80  Identities=30%  Similarity=0.572  Sum_probs=76.4

Q ss_pred             ccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCccccc
Q 006487           71 RFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKC  150 (643)
Q Consensus        71 py~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC  150 (643)
                      ||+|++|++.|.....|..|++.|.             ++++|.|++|       ++.|.....|.+|+++|+++++|+|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C   60 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHS-------------DTRPYPCQYC-------GKRFHQKSDMKKHTFIHTGEKPHKC   60 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH-------------TCCCEECSSS-------CCEESSHHHHHHHHHHHHTCCCEEC
T ss_pred             CccCCCCcccccCchhHHHHHHHcC-------------CCCCeeCCcC-------ChhhCCHHHHHHHHHHhcCCCCCcC
Confidence            6899999999999999999999984             7899999998       9999999999999999999999999


Q ss_pred             ccccccccchhhhhhccccc
Q 006487          151 EKCSKRYAVQSDWKAHSKTC  170 (643)
Q Consensus       151 ~~CgKsF~~ks~L~~H~rth  170 (643)
                      ++|++.|..+..|..|+++|
T Consensus        61 ~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A           61 QVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             TTTSCEESSHHHHHHHHHHH
T ss_pred             CCcchhhCChHHHHHHHHhh
Confidence            99999999999999999873

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.53  E-value=7.8e-15  Score=126.19  Aligned_cols=85  Identities=28%  Similarity=0.636  Sum_probs=78.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccc--cccccccchhhhhhcccc-cCCceeecC-CCCCc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE--KCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLF  183 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~--~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F  183 (643)
                      ..+++|.|++..|     ++.|.....|.+|+++|+++++|+|.  .|++.|.....|..|+++ +++++|.|+ |++.|
T Consensus        11 ~~~~~~~C~~~~C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   85 (100)
T 2ebt_A           11 EKRRIHYCDYPGC-----TKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSF   85 (100)
T ss_dssp             CSCCCEECCSSSC-----CCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBC
T ss_pred             ccCcceEcCCCCC-----CCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCcc
Confidence            4678999997222     99999999999999999999999996  699999999999999999 899999999 99999


Q ss_pred             CChHHHHHHHHHhh
Q 006487          184 SRRDSFITHRAFCD  197 (643)
Q Consensus       184 ~~ks~L~~H~~~Hh  197 (643)
                      ..+..|.+|+++|.
T Consensus        86 ~~~~~l~~H~~~H~   99 (100)
T 2ebt_A           86 SRSDHLALHMKRHQ   99 (100)
T ss_dssp             SSHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999999999984

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.50  E-value=1.2e-14  Score=122.37  Aligned_cols=83  Identities=24%  Similarity=0.575  Sum_probs=76.3

Q ss_pred             cCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccc--cccccccchhhhhhcccc-cCCceeecC-CCCCcC
Q 006487          109 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE--KCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFS  184 (643)
Q Consensus       109 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~--~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~  184 (643)
                      ..++|.|++.+|     ++.|.....|..|+++|+++++|+|+  .|++.|.....|..|+++ +++++|.|+ |++.|.
T Consensus         2 ~~~~~~C~~~~C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   76 (89)
T 2wbs_A            2 RTATHTCDYAGC-----GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS   76 (89)
T ss_dssp             -CCCEECCSTTT-----CCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred             CCCCeeCCCCCC-----CCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccC
Confidence            357899999222     99999999999999999999999997  599999999999999999 899999999 999999


Q ss_pred             ChHHHHHHHHHh
Q 006487          185 RRDSFITHRAFC  196 (643)
Q Consensus       185 ~ks~L~~H~~~H  196 (643)
                      .+..|.+|+++|
T Consensus        77 ~~~~l~~H~~~H   88 (89)
T 2wbs_A           77 RSDHLALHMKRH   88 (89)
T ss_dssp             SHHHHHHHGGGG
T ss_pred             CHHHHHHHHHhh
Confidence            999999999987

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.50  E-value=1.4e-15  Score=128.95  Aligned_cols=83  Identities=20%  Similarity=0.314  Sum_probs=78.4

Q ss_pred             CceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccccCCceeecC-CCCCcCChHH
Q 006487          110 RKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDS  188 (643)
Q Consensus       110 ~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rthgeKpy~C~-CgK~F~~ks~  188 (643)
                      +++|.|++|       ++.|.....|..|+++|++++||+|++|++.|.....|..|++++..++|.|+ |++.|..+..
T Consensus         1 ek~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~   73 (88)
T 1llm_C            1 MKPFQCRIC-------MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYH   73 (88)
T ss_dssp             CCCEECTTT-------CCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCC-------CCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhh
Confidence            478999998       99999999999999999999999999999999999999999999556999999 9999999999


Q ss_pred             HHHHHHHhhhh
Q 006487          189 FITHRAFCDAL  199 (643)
Q Consensus       189 L~~H~~~Hh~~  199 (643)
                      |..|++.+|..
T Consensus        74 L~~H~~~~h~~   84 (88)
T 1llm_C           74 LENEVARLKKL   84 (88)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            99999988764

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.49  E-value=2e-14  Score=120.98  Aligned_cols=82  Identities=23%  Similarity=0.569  Sum_probs=76.9

Q ss_pred             CCccccCc--ccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC--CCccCCCCCCcccChhhHHhHhhhccC
Q 006487           69 TNRFICEV--CNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE--PTCVHHDPSRALGDLTGIKKHYSRKHG  144 (643)
Q Consensus        69 ~kpy~C~~--CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~--C~C~~~~~~k~F~~~s~L~~H~r~H~g  144 (643)
                      .++|.|++  |++.|.....|..|++.|.             ++++|.|++  |       ++.|.....|.+|+++|++
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~   62 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHT-------------GEKPYHCDWDGC-------GWKFARSDELTRHYRKHTG   62 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSC-------------SSCCEECCSTTT-------CCEESSHHHHHHHHHHHHC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcC-------------CCCCcCCCCCCC-------CCccCCHHHHHHHHHHcCC
Confidence            46799999  9999999999999999985             789999974  6       9999999999999999999


Q ss_pred             Ccccccccccccccchhhhhhccccc
Q 006487          145 EKKWKCEKCSKRYAVQSDWKAHSKTC  170 (643)
Q Consensus       145 eKpfkC~~CgKsF~~ks~L~~H~rth  170 (643)
                      +++|+|++|++.|.....|..|+++|
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           63 HRPFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHGGGG
T ss_pred             CCCccCCCCCcccCCHHHHHHHHHhh
Confidence            99999999999999999999999874

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.49  E-value=1.6e-15  Score=137.32  Aligned_cols=121  Identities=13%  Similarity=0.190  Sum_probs=89.5

Q ss_pred             cccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhcc
Q 006487           64 KTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH  143 (643)
Q Consensus        64 k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~  143 (643)
                      ..+.+.++|.|..++..  ....+..|.+.+..          ...++.+.|++|.- ...+.+.|.....|..|+ .|+
T Consensus         5 ~~~~~~k~~~~~~k~~~--~~~s~ee~~~~~~l----------~~~~~~~~c~~~~~-~~~~~~~~~~~~~l~~h~-~h~   70 (129)
T 2wbt_A            5 DVDSGSKKYLSNHKGIF--IHVTLEELKRYHQL----------TPEQKRLIRAIVKT-LIHNPQLLDESSYLYRLL-ASK   70 (129)
T ss_dssp             CCCTTCCGGGGCSSCEE--EECCHHHHHHHTTS----------CHHHHHHHHHHHHH-HHHCGGGTTTHHHHHHHH-HHH
T ss_pred             hhcccccccccccCCee--eeecHHhhhccccC----------ChhhCcccchhhhc-ccCCCcccCCHHHHHHHH-HhC
Confidence            34677899988775533  23344555444421          12456677777610 001134455677777777 689


Q ss_pred             CCcccccccccccccchhhhhhcccccCCceeecC-CCCCcCChHHHHHHHHHhhhh
Q 006487          144 GEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITHRAFCDAL  199 (643)
Q Consensus       144 geKpfkC~~CgKsF~~ks~L~~H~rthgeKpy~C~-CgK~F~~ks~L~~H~~~Hh~~  199 (643)
                      +++||+|++|++.|.....|..|+++| ++||.|+ |++.|.++..|.+|+++|+.+
T Consensus        71 ~~~~~~C~~C~k~f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           71 AISQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HHCSEECTTTCCEESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCCeECCCCCcccCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            999999999999999999999999999 9999999 999999999999999999764

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.48  E-value=2.2e-14  Score=123.30  Aligned_cols=85  Identities=22%  Similarity=0.550  Sum_probs=76.7

Q ss_pred             CCCccccCc--ccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487           68 ATNRFICEV--CNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus        68 ~~kpy~C~~--CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      .+++|.|.+  |++.|.....|..|++.|.             .+++|.|++..|     ++.|.....|.+|+++|+++
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-----~~~f~~~~~l~~H~~~h~~~   73 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHT-------------GEKPYKCTWEGC-----DWRFARSDELTRHYRKHTGA   73 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHS-------------CCCCEECCSSSC-----CCEESSHHHHHHHHHHHTSC
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhC-------------CCCCeeCCCCCC-----CCccCCHHHHHHHHHHhCCC
Confidence            346799997  9999999999999999985             788999974222     99999999999999999999


Q ss_pred             cccccccccccccchhhhhhccccc
Q 006487          146 KKWKCEKCSKRYAVQSDWKAHSKTC  170 (643)
Q Consensus       146 KpfkC~~CgKsF~~ks~L~~H~rth  170 (643)
                      ++|+|++|++.|..+..|..|+++|
T Consensus        74 ~~~~C~~C~~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           74 KPFQCGVCNRSFSRSDHLALHMKRH   98 (100)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred             CCeECCCCcCccCCHHHHHHHHHHh
Confidence            9999999999999999999999874

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=1.6e-13  Score=114.69  Aligned_cols=83  Identities=17%  Similarity=0.332  Sum_probs=66.0

Q ss_pred             hhcCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhH
Q 006487           59 IALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKH  138 (643)
Q Consensus        59 l~~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H  138 (643)
                      +..|+++|.++++|+|++|++.|.....|..|++.|+..         ...+++|.|++|       ++.|.....|.+|
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~---------~~~~~~~~C~~C-------~~~f~~~~~L~~H   66 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP---------NFVPAAFVCSKC-------GKTFTRRNTMARH   66 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS---------SCCCCCEECSSS-------CCEESCHHHHHHH
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCC---------cCCCcceECCCC-------CChhCCHHHHHHH
Confidence            567888888888899999999888888888888776510         011368888887       8888888888888


Q ss_pred             hhhccCCcccccccccccc
Q 006487          139 YSRKHGEKKWKCEKCSKRY  157 (643)
Q Consensus       139 ~r~H~geKpfkC~~CgKsF  157 (643)
                      +++|++++++.|..|+..|
T Consensus        67 ~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           67 ADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             HHHCCCCCSCCCCCCCCCC
T ss_pred             HHHccCCCCcccCCCCCCC
Confidence            8888888888888888764

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.42  E-value=1.4e-14  Score=122.78  Aligned_cols=80  Identities=20%  Similarity=0.326  Sum_probs=75.8

Q ss_pred             CCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCccc
Q 006487           69 TNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKW  148 (643)
Q Consensus        69 ~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpf  148 (643)
                      +++|+|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|..|+++|++ ++|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~h~~-~~~   59 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHT-------------GEKPFACDIC-------GRKFARSDERKRHRDIQHI-LPI   59 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESSHHHHHHHHHHHTH-HHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcC-------------CCCCccCCCC-------CCccCCHHHHHHHHHHhCC-Ccc
Confidence            579999999999999999999999985             7899999998       9999999999999999984 899


Q ss_pred             ccccccccccchhhhhhcccc
Q 006487          149 KCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       149 kC~~CgKsF~~ks~L~~H~rt  169 (643)
                      .|+.|++.|..+..|..|++.
T Consensus        60 ~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C           60 LEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhHHHHHH
Confidence            999999999999999999987

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.7e-13  Score=112.96  Aligned_cols=71  Identities=21%  Similarity=0.476  Sum_probs=53.1

Q ss_pred             CCCCccccCc--ccccccCchhHHhHhh-hcCCCccccccccccccCceeeCCC--CCccCCCCCCcccChhhHHhHhhh
Q 006487           67 MATNRFICEV--CNKGFQREQNLQLHRR-GHNLPWKLKQKTTKEVKRKVYLCPE--PTCVHHDPSRALGDLTGIKKHYSR  141 (643)
Q Consensus        67 ~~~kpy~C~~--CgK~F~~~~~L~~H~r-~H~~~~~~~~~~~~~~~~k~y~C~~--C~C~~~~~~k~F~~~s~L~~H~r~  141 (643)
                      +++++|.|+.  |++.|..+..|..|++ .|.             .+++|.|++  |       ++.|.....|.+|+++
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~-------------~~~~~~C~~~~C-------~k~f~~~~~L~~H~~~   62 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHI-------------HQKSFSCPEPAC-------GKSFNFKKHLKEHMKL   62 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGG-------------SCCCEECSCTTT-------CCEESSHHHHHHHHHH
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhC-------------CCCCeECCCCCC-------cCccCCHHHHHHHHHH
Confidence            3456777776  7888877777877777 563             667777777  6       7777777777777777


Q ss_pred             ccCCcccccccccccc
Q 006487          142 KHGEKKWKCEKCSKRY  157 (643)
Q Consensus       142 H~geKpfkC~~CgKsF  157 (643)
                      |++++||+|++|++.|
T Consensus        63 H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A           63 HSDTRDYICEFSGPSS   78 (79)
T ss_dssp             HHTSCCCSCCSSSCCC
T ss_pred             hCCCCCeeCCCCCCCC
Confidence            7777777777777776

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.40  E-value=1.1e-13  Score=110.54  Aligned_cols=53  Identities=23%  Similarity=0.488  Sum_probs=33.7

Q ss_pred             CceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc
Q 006487          110 RKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       110 ~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      ||||.|++|       ++.|.....|.+|+++|+++|||+|++|+|.|..+..|..|+++
T Consensus         2 EKpy~C~~C-------~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~   54 (60)
T 4gzn_C            2 ERPFFCNFC-------GKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV   54 (60)
T ss_dssp             CCCEECTTT-------CCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGG
T ss_pred             CCCccCCCC-------CCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCc
Confidence            456666665       66666666666666666666666666666666666666666666

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=1.6e-13  Score=114.71  Aligned_cols=77  Identities=19%  Similarity=0.399  Sum_probs=62.7

Q ss_pred             HHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC----cccccccccccccchhh
Q 006487           87 LQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE----KKWKCEKCSKRYAVQSD  162 (643)
Q Consensus        87 L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge----KpfkC~~CgKsF~~ks~  162 (643)
                      |..|+++|.             ++++|.|++|       ++.|.....|.+|+++|+.+    ++|+|++|++.|..+..
T Consensus         3 ~~~H~~~H~-------------~~k~~~C~~C-------~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~   62 (86)
T 1x6h_A            3 SGSSGRTHT-------------GEKPYACSHC-------DKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT   62 (86)
T ss_dssp             TTCCSTTCC-------------CCCCEECSSS-------SCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHH
T ss_pred             cccccceec-------------CCCCCcCCCC-------CCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHH
Confidence            556777774             7788888887       88888888888888877664    68888888888888888


Q ss_pred             hhhcccc-cCCceeecC-CCCCc
Q 006487          163 WKAHSKT-CGTREYRCD-CGTLF  183 (643)
Q Consensus       163 L~~H~rt-hgeKpy~C~-CgK~F  183 (643)
                      |..|+++ +++++|.|+ |+..|
T Consensus        63 L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           63 MARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             HHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             HHHHHHHccCCCCcccCCCCCCC
Confidence            8888888 788888888 88765

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.38  E-value=2.1e-13  Score=109.06  Aligned_cols=58  Identities=24%  Similarity=0.559  Sum_probs=54.9

Q ss_pred             CCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCc
Q 006487           69 TNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK  146 (643)
Q Consensus        69 ~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geK  146 (643)
                      ||||+|++|+|.|.....|..|+++|+             ++++|.|++|       ++.|.....|.+|+++|++|+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht-------------~ekp~~C~~C-------~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHL-------------GYRPRSCPEC-------GKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHH-------------TCCCEECTTT-------CCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhC-------------CCcCeECCCC-------CCCcCCHHHHHHHhCccCCCC
Confidence            699999999999999999999999995             8999999999       999999999999999999874

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.2e-13  Score=120.00  Aligned_cols=74  Identities=15%  Similarity=0.201  Sum_probs=67.4

Q ss_pred             CCcccChhhHHhHhhhccCCccccccccccccc-chhhhhhcccc-cC-CceeecC-CCCCcCChHHHHHHHHHhhhh
Q 006487          126 SRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYA-VQSDWKAHSKT-CG-TREYRCD-CGTLFSRRDSFITHRAFCDAL  199 (643)
Q Consensus       126 ~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~-~ks~L~~H~rt-hg-eKpy~C~-CgK~F~~ks~L~~H~~~Hh~~  199 (643)
                      ...+.....+..|+++|.++++|+|++|++.|. .+..|++|+++ ++ +++|.|+ |+|.|.++..|.+|+++|+..
T Consensus         3 s~s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~   80 (98)
T 2gqj_A            3 SGSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA   80 (98)
T ss_dssp             CCCCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCS
T ss_pred             CCCCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCC
Confidence            445666777889999999999999999999999 99999999999 67 8999999 999999999999999999643

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=3.3e-13  Score=111.24  Aligned_cols=72  Identities=24%  Similarity=0.510  Sum_probs=65.7

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhh-hccCCccccccc--ccccccchhhhhhcccc-cCCceeecC-CCCC
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYS-RKHGEKKWKCEK--CSKRYAVQSDWKAHSKT-CGTREYRCD-CGTL  182 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r-~H~geKpfkC~~--CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~  182 (643)
                      .++++|.|+...|     ++.|.....|.+|++ .|.++++|+|++  |++.|..+..|..|+++ +++++|.|+ |++.
T Consensus         3 ~~~~~~~C~~~~C-----~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~   77 (79)
T 2dlk_A            3 SGSSGMPCDFPGC-----GRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPS   77 (79)
T ss_dssp             SCCSSEECSSTTT-----CCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCC
T ss_pred             CCCCCccCCCCCC-----cCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCC
Confidence            3678999987222     999999999999999 799999999999  99999999999999999 899999999 9999


Q ss_pred             cC
Q 006487          183 FS  184 (643)
Q Consensus       183 F~  184 (643)
                      |.
T Consensus        78 F~   79 (79)
T 2dlk_A           78 SG   79 (79)
T ss_dssp             CC
T ss_pred             CC
Confidence            94

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=8.7e-13  Score=108.74  Aligned_cols=66  Identities=26%  Similarity=0.438  Sum_probs=48.0

Q ss_pred             ccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccC
Q 006487           65 TLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG  144 (643)
Q Consensus        65 ~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~g  144 (643)
                      .+.++++|+|++|++.|.....|..|+++|+             .+++|.|++|       ++.|.....|.+|+++|++
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~H~~   71 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHT-------------GEKPYKCDEC-------GKAFIQRSHLIGHHRVHTG   71 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC-------------CSCSEECSSS-------CCEESSHHHHHHHGGGSCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcC-------------CCcCeeCCCC-------CCccCCHHHHHHHHHHhCC
Confidence            3445677777777777777777777777774             5677777776       7777777777777777777


Q ss_pred             Cccccc
Q 006487          145 EKKWKC  150 (643)
Q Consensus       145 eKpfkC  150 (643)
                      ++||+|
T Consensus        72 ~~p~~C   77 (77)
T 2cot_A           72 SGPSSG   77 (77)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            777776

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.35  E-value=5.9e-13  Score=110.56  Aligned_cols=76  Identities=26%  Similarity=0.602  Sum_probs=70.9

Q ss_pred             eeeC--CCCCccCCCCCCcccChhhHHhHhhhccCCccccccc--ccccccchhhhhhcccc-cCCceeecC----CCCC
Q 006487          112 VYLC--PEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEK--CSKRYAVQSDWKAHSKT-CGTREYRCD----CGTL  182 (643)
Q Consensus       112 ~y~C--~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~--CgKsF~~ks~L~~H~rt-hgeKpy~C~----CgK~  182 (643)
                      ||.|  ++|       ++.|.....|.+|+++|+++++|+|++  |++.|..+..|..|+++ ++   |.|+    |++.
T Consensus         1 p~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~   70 (85)
T 2j7j_A            1 MYVCHFENC-------GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFV   70 (85)
T ss_dssp             CEECCSTTC-------CCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCE
T ss_pred             CccCCCCCC-------CcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCc
Confidence            5889  777       999999999999999999999999998  99999999999999999 55   9993    9999


Q ss_pred             cCChHHHHHHHHHhh
Q 006487          183 FSRRDSFITHRAFCD  197 (643)
Q Consensus       183 F~~ks~L~~H~~~Hh  197 (643)
                      |..+..|.+|+++||
T Consensus        71 f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           71 GKTWTLYLKHVAECH   85 (85)
T ss_dssp             ESSHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHhcC
Confidence            999999999999885

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=8e-13  Score=115.05  Aligned_cols=72  Identities=15%  Similarity=0.271  Sum_probs=67.0

Q ss_pred             CCcccChhhHHhHhhhccCCcccccccccccc-cchhhhhhcccccCCceeecC-CCCCcCChHHHHHH-HHHhh
Q 006487          126 SRALGDLTGIKKHYSRKHGEKKWKCEKCSKRY-AVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITH-RAFCD  197 (643)
Q Consensus       126 ~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF-~~ks~L~~H~rthgeKpy~C~-CgK~F~~ks~L~~H-~~~Hh  197 (643)
                      ...|.....|..|+++|.++++|+|++|++.| ..+..|+.|+++|++++|.|+ |+|.|.++..|++| +++|.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             CCCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHHHHHHHhHHhcC
Confidence            35677788899999999999999999999999 999999999999988999999 99999999999999 88883

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.32  E-value=5.6e-13  Score=110.66  Aligned_cols=76  Identities=25%  Similarity=0.558  Sum_probs=72.1

Q ss_pred             cccc--CcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC--CCccCCCCCCcccChhhHHhHhhhccCCc
Q 006487           71 RFIC--EVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE--PTCVHHDPSRALGDLTGIKKHYSRKHGEK  146 (643)
Q Consensus        71 py~C--~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~--C~C~~~~~~k~F~~~s~L~~H~r~H~geK  146 (643)
                      ||+|  ++|++.|.....|..|+++|.             ++++|.|++  |       ++.|.....|.+|+++|++  
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~--   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHT-------------QQLPYECPHEGC-------DKRFSLPSRLKRHEKVHAG--   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH-------------TTCCEECCSTTC-------CCEESSHHHHHHHHHHHHS--
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhC-------------CCCCeeCCCCCC-------cCccCCHHHHHHHHHHhCC--
Confidence            6899  999999999999999999985             789999998  7       9999999999999999998  


Q ss_pred             cccccc---ccccccchhhhhhcccc
Q 006487          147 KWKCEK---CSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       147 pfkC~~---CgKsF~~ks~L~~H~rt  169 (643)
                       |+|.+   |++.|.....|..|+++
T Consensus        59 -~~C~~~~~C~~~f~~~~~l~~H~~~   83 (85)
T 2j7j_A           59 -YPCKKDDSCSFVGKTWTLYLKHVAE   83 (85)
T ss_dssp             -EECCSCSSCCCEESSHHHHHHHHHH
T ss_pred             -CCCCCCCCCCCccCCHHHHHHHHHh
Confidence             99999   99999999999999987

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=1.2e-12  Score=107.94  Aligned_cols=64  Identities=25%  Similarity=0.548  Sum_probs=59.1

Q ss_pred             cccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc-cCCceeec
Q 006487          107 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  177 (643)
Q Consensus       107 ~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C  177 (643)
                      +.++++|.|++|       ++.|.....|.+|+++|+++++|+|++|++.|..+..|..|+++ ++++||.|
T Consensus        13 ~~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           13 QRERRRYKCDEC-------GKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCSCSSBCSSS-------CCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCCEECCCC-------CcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            357889999998       99999999999999999999999999999999999999999999 78999988

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=4.2e-13  Score=110.63  Aligned_cols=64  Identities=20%  Similarity=0.415  Sum_probs=58.3

Q ss_pred             HHhHhhhccCCcccccccccccccchhhhhhcccc-cC--CceeecC-CCCCcCChHHHHHHHHHhhh
Q 006487          135 IKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CG--TREYRCD-CGTLFSRRDSFITHRAFCDA  198 (643)
Q Consensus       135 L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hg--eKpy~C~-CgK~F~~ks~L~~H~~~Hh~  198 (643)
                      |.+|+++|++++||+|++|++.|..+..|..|++. |.  +++|.|+ |++.|.++..|.+|++++|.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            56799999999999999999999999999999984 54  3899999 99999999999999998864

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=1.1e-12  Score=106.89  Aligned_cols=61  Identities=28%  Similarity=0.633  Sum_probs=54.6

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCChHHHHHHHHHhhh
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDA  198 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L~~H~~~Hh~  198 (643)
                      +.++|++++||+|++|++.|..+..|..|+++ +++++|+|+ |++.|.++..|.+|+++|+.
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            45678899999999999999999999999998 788999999 99999999999999999854

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=9.7e-13  Score=114.17  Aligned_cols=80  Identities=18%  Similarity=0.328  Sum_probs=71.8

Q ss_pred             ccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCccc-ChhhHHhHhhhccC-Cccccccccccc
Q 006487           79 KGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALG-DLTGIKKHYSRKHG-EKKWKCEKCSKR  156 (643)
Q Consensus        79 K~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~-~~s~L~~H~r~H~g-eKpfkC~~CgKs  156 (643)
                      ..+.....+..|+++|.             .+++|.|++|       ++.|. ....|++|+++|++ +++|+|++|+|.
T Consensus         4 ~s~~~~~~~~~h~~~h~-------------~~~~~~C~~C-------~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~   63 (98)
T 2gqj_A            4 GSSGPGGPEEQWQRAIH-------------ERGEAVCPTC-------NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQ   63 (98)
T ss_dssp             CCCCCCCSCSHHHHTTT-------------TTSCCCCTTT-------CCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCC
T ss_pred             CCCCCCCcHHHHHHHhc-------------cCCCcCCCCC-------CCChhhhHHHHHHHHHHHcCCCCCEECCCCCCc
Confidence            34556677888999885             8899999998       99999 99999999999999 999999999999


Q ss_pred             ccchhhhhhcccc-cCCceeecC
Q 006487          157 YAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       157 F~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      |..+..|.+|+++ ++++|+..+
T Consensus        64 F~~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           64 FKSKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             CSCHHHHHHHHHHHSCSCSSCCC
T ss_pred             cCCHHHHHHHHHHHcCCCCCCCC
Confidence            9999999999999 899987654

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.27  E-value=3.6e-13  Score=121.75  Aligned_cols=112  Identities=13%  Similarity=0.062  Sum_probs=86.3

Q ss_pred             cccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCccccccccccccc------chhhhhhcccccCCceeecC-C
Q 006487          107 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYA------VQSDWKAHSKTCGTREYRCD-C  179 (643)
Q Consensus       107 ~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~------~ks~L~~H~rthgeKpy~C~-C  179 (643)
                      +.+.++|.|..+++     ...|.....+.. ......++++.|++|.+.|.      ....|..|++.++++||.|+ |
T Consensus         7 ~~~~k~~~~~~k~~-----~~~~s~ee~~~~-~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~~h~~~~~~~C~~C   80 (129)
T 2wbt_A            7 DSGSKKYLSNHKGI-----FIHVTLEELKRY-HQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLC   80 (129)
T ss_dssp             CTTCCGGGGCSSCE-----EEECCHHHHHHH-TTSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHHHHHHHCSEECTTT
T ss_pred             cccccccccccCCe-----eeeecHHhhhcc-ccCChhhCcccchhhhcccCCCcccCCHHHHHHHHHhCCCCCeECCCC
Confidence            35789999987643     333332222222 22334467889999887765      66778888866889999999 9


Q ss_pred             CCCcCChHHHHHHHHHhhhhhhhhhhcCCCccccCCCCccCCccccccccccchhhhhhhhccC
Q 006487          180 GTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQ  243 (643)
Q Consensus       180 gK~F~~ks~L~~H~~~Hh~~~~~~~~~~~~~~~~~~k~y~C~~~C~~~fs~~s~L~~H~k~hh~  243 (643)
                      ++.|..+..|.+|+++|                  +++|.|+. |++.|.....|..|++.||.
T Consensus        81 ~k~f~~~~~l~~H~~~H------------------~~~~~C~~-C~k~f~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A           81 LMPFSSSVSLKQHIRYT------------------EHTKVCPV-CKKEFTSTDSALDHVCKKHN  125 (129)
T ss_dssp             CCEESSHHHHHHHHHHT------------------CCCCBCTT-TCCBCSSHHHHHHHHHHTTC
T ss_pred             CcccCCHhHHHHHHHHC------------------CCCCCCCC-CCcccCCHHHHHHHHHHHCC
Confidence            99999999999999977                  24699999 99999999999999999864

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=1.5e-12  Score=103.81  Aligned_cols=60  Identities=28%  Similarity=0.572  Sum_probs=52.6

Q ss_pred             hhhccCCcccccccccccccchhhhhhcccc-c--CCceeecC-CCCCcCChHHHHHHHHHhhh
Q 006487          139 YSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-C--GTREYRCD-CGTLFSRRDSFITHRAFCDA  198 (643)
Q Consensus       139 ~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-h--geKpy~C~-CgK~F~~ks~L~~H~~~Hh~  198 (643)
                      +++|++++||+|++|++.|..+..|..|+++ |  ++++|.|+ |++.|.++..|.+|+++||+
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            3578889999999999999999999999887 5  67999999 99999999999999998875

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=2.4e-12  Score=113.83  Aligned_cols=72  Identities=17%  Similarity=0.263  Sum_probs=50.8

Q ss_pred             cCCCCccccCcccccccCchhHHhHhh-hcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhH-hhhcc
Q 006487           66 LMATNRFICEVCNKGFQREQNLQLHRR-GHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKH-YSRKH  143 (643)
Q Consensus        66 h~~~kpy~C~~CgK~F~~~~~L~~H~r-~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H-~r~H~  143 (643)
                      .++++||+|++|++.|..+..|..|++ .|..          ..++++|.|++|       ++.|.....|.+| +++|+
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~----------~~~ekpf~C~~C-------gk~F~~~~~L~~H~~r~Ht   75 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPN----------VVLNSSYVCVEC-------NFLTKRYDALSEHNLKYHP   75 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSS----------CCCSCCEEETTT-------TEEESSTHHHHTHHHHTST
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCC----------CCCCCCcCCCCC-------CcccCCHHHHHHHHHHhcC
Confidence            456777777777777777777777776 3620          014677777777       7777777777777 67777


Q ss_pred             CCccccccccc
Q 006487          144 GEKKWKCEKCS  154 (643)
Q Consensus       144 geKpfkC~~Cg  154 (643)
                      ++|||+|.+|.
T Consensus        76 gekpy~C~~~~   86 (102)
T 2ghf_A           76 GEENFKLTMVK   86 (102)
T ss_dssp             TCCCEEEEECC
T ss_pred             CCCCeeCCccc
Confidence            77777777653

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.23  E-value=4.4e-12  Score=110.33  Aligned_cols=76  Identities=14%  Similarity=0.204  Sum_probs=68.7

Q ss_pred             ccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcc-cChhhHHhHhhhccCCcccccccccccc
Q 006487           79 KGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRAL-GDLTGIKKHYSRKHGEKKWKCEKCSKRY  157 (643)
Q Consensus        79 K~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F-~~~s~L~~H~r~H~geKpfkC~~CgKsF  157 (643)
                      ..|.....|..|++.|.             .+++|.|++|       ++.| .....|+.|+++| +++||+|.+|+|.|
T Consensus        14 ~~~~~~~~~~~~~~~~~-------------~~~~~~C~~C-------~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F   72 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIV-------------DKGSVSCPTC-------QAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQL   72 (96)
T ss_dssp             CSSCTTCHHHHHHHHHH-------------HTSCEECTTT-------CSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCC
T ss_pred             CCCCCchHHHHHHHHhc-------------CCCCcCCCCC-------CCCcccCHHHHHHHHHHH-CCCCeECCCCCCee
Confidence            45677888999998884             7899999999       9999 9999999999999 99999999999999


Q ss_pred             cchhhhhhc-ccccCCcee
Q 006487          158 AVQSDWKAH-SKTCGTREY  175 (643)
Q Consensus       158 ~~ks~L~~H-~rthgeKpy  175 (643)
                      ..+..|+.| +++|.++||
T Consensus        73 ~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           73 RSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             SSHHHHHHHHHHHTCCCSS
T ss_pred             CCHHHHHHHhHHhcCCCCC
Confidence            999999999 777777766

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.23  E-value=6.9e-12  Score=102.47  Aligned_cols=64  Identities=23%  Similarity=0.447  Sum_probs=45.7

Q ss_pred             ccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccC
Q 006487           65 TLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG  144 (643)
Q Consensus        65 ~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~g  144 (643)
                      .+.++++|+|++|++.|..+..|..|++.|+             .+++|.|++|       ++.|.....|.+|+++|++
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~   70 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHT-------------GEKPYRCNIC-------GAQFNRPANLKTHTRIHSG   70 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHC-------------CCCSEECTTT-------CCEESCHHHHHHHHHHHCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcC-------------CCCCEECCCC-------CchhCCHHHHHHHHHhcCC
Confidence            3445667777777777777777777777774             5667777776       7777777777777777777


Q ss_pred             Cccc
Q 006487          145 EKKW  148 (643)
Q Consensus       145 eKpf  148 (643)
                      +|||
T Consensus        71 ~kp~   74 (74)
T 2lce_A           71 EKPY   74 (74)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            7765

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.21  E-value=5.9e-12  Score=111.24  Aligned_cols=66  Identities=15%  Similarity=0.160  Sum_probs=60.3

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhh-hc---cCCcccccccccccccchhhhhhc-ccc-cCCceeecC-CC
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYS-RK---HGEKKWKCEKCSKRYAVQSDWKAH-SKT-CGTREYRCD-CG  180 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r-~H---~geKpfkC~~CgKsF~~ks~L~~H-~rt-hgeKpy~C~-Cg  180 (643)
                      .++++|.|++|       ++.|.....|.+|++ +|   .+++||+|++|+|.|..+..|..| +++ +++|||.|. +.
T Consensus        14 ~gekpy~C~~C-------gk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           14 KVEGGYECKYC-------TFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCSSEECSSC-------SCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCcCcCCCCC-------CCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            57899999998       999999999999998 58   568999999999999999999999 788 799999997 54

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.20  E-value=6.4e-12  Score=96.98  Aligned_cols=54  Identities=22%  Similarity=0.489  Sum_probs=39.1

Q ss_pred             CCcccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCChHHHHHHHHHhh
Q 006487          144 GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       144 geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      +++||+|++|++.|.....|..|+++ +++++|.|+ |++.|.++..|.+|+++||
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            35677777777777777777777777 677778887 8888888888888887775

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.19  E-value=7.9e-12  Score=102.11  Aligned_cols=61  Identities=21%  Similarity=0.511  Sum_probs=37.6

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc-cCCcee
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREY  175 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy  175 (643)
                      .++++|.|++|       ++.|.....|.+|+++|+++++|+|++|++.|..+..|.+|+++ ++++||
T Consensus        13 ~~~~~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           13 HSDKPYKCDRC-------QASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCSBCCTTS-------SCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCCCeECCCC-------CceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            34556666665       66666666666666666666666666666666666666666665 555554

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.18  E-value=1.6e-11  Score=99.21  Aligned_cols=63  Identities=19%  Similarity=0.291  Sum_probs=40.8

Q ss_pred             cCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487           66 LMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus        66 h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      +.++++|+|++|++.|..+..|+.|+++|+             .+++|.|++|       ++.|.....|.+|+++|+++
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~h~~~   63 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHC-------------TDRPFKCNYC-------SFDTKQPSNLSKHMKKFHGD   63 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGC-------------CSCSEECSSS-------SCEESSHHHHHHHHHHHHSS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCEeCCCC-------CCccCCHHHHHHHHHHHhCC
Confidence            445566666666666666666666666663             5566666666       66666666666666666666


Q ss_pred             ccc
Q 006487          146 KKW  148 (643)
Q Consensus       146 Kpf  148 (643)
                      +|.
T Consensus        64 ~p~   66 (70)
T 1x5w_A           64 MSG   66 (70)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            553

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.17  E-value=1.7e-11  Score=99.64  Aligned_cols=63  Identities=25%  Similarity=0.416  Sum_probs=42.9

Q ss_pred             ccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhc
Q 006487           63 PKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRK  142 (643)
Q Consensus        63 ~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H  142 (643)
                      .++|.++++|+|++|++.|.....|+.|+++|.             .+++|.|++|       ++.|.....|.+|+++|
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~H   65 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHT-------------GEKPYKCLEC-------GKAFSQNSGLINHQRIH   65 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGG-------------CSCCEECSSS-------CCEESSHHHHHHHHHHH
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcC-------------CCCCeECCCC-------CcccCCHHHHHHHHHhc
Confidence            455666677777777777777777777776663             5666777766       67777777777777776


Q ss_pred             cCC
Q 006487          143 HGE  145 (643)
Q Consensus       143 ~ge  145 (643)
                      +++
T Consensus        66 ~~~   68 (72)
T 1x6e_A           66 TSG   68 (72)
T ss_dssp             HSS
T ss_pred             CCC
Confidence            654

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.16  E-value=1.4e-11  Score=99.60  Aligned_cols=57  Identities=18%  Similarity=0.443  Sum_probs=34.2

Q ss_pred             ccCCcccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCChHHHHHHHHHhhh
Q 006487          142 KHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDA  198 (643)
Q Consensus       142 H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L~~H~~~Hh~  198 (643)
                      |.++++|+|++|++.|..+..|..|+++ +++++|.|+ |++.|.++..|.+|+++|+.
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhC
Confidence            4455566666666666666666666655 455666665 66666666666666666554

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=1.4e-11  Score=101.61  Aligned_cols=58  Identities=22%  Similarity=0.523  Sum_probs=49.4

Q ss_pred             hccCCcccccccccccccchhhhhhcccc-cC---CceeecC-CCCCcCChHHHHHHHHHhhh
Q 006487          141 RKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CG---TREYRCD-CGTLFSRRDSFITHRAFCDA  198 (643)
Q Consensus       141 ~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hg---eKpy~C~-CgK~F~~ks~L~~H~~~Hh~  198 (643)
                      .|++++||+|++|++.|..+..|..|+++ ++   +++|.|+ |++.|.++..|.+|++.+|.
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTST
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCC
Confidence            37788999999999999999999999888 43   7899998 99999999999999966553

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.13  E-value=1.8e-11  Score=104.54  Aligned_cols=54  Identities=15%  Similarity=0.373  Sum_probs=32.5

Q ss_pred             hccCCcccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCChHHHHHHHH
Q 006487          141 RKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRA  194 (643)
Q Consensus       141 ~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L~~H~~  194 (643)
                      ++..+++|.|++|+|.|..+..|++|+++ ++++||.|+ |+|.|.++..|.+|++
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~   77 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN   77 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCc
Confidence            34445556666666666666666666665 556666666 6666666666666653

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=3.4e-12  Score=102.99  Aligned_cols=70  Identities=13%  Similarity=0.162  Sum_probs=62.7

Q ss_pred             CchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhh
Q 006487           83 REQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSD  162 (643)
Q Consensus        83 ~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~  162 (643)
                      ++..|..|+++|.             ++++|.|++|       ++.|.....|..       +++|+|++|++.|..+..
T Consensus         2 ~~~~l~~H~~~h~-------------~~~~~~C~~C-------~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~   54 (73)
T 2ctu_A            2 SSGSSGKRQKIHL-------------GDRSQKCSKC-------GIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAA   54 (73)
T ss_dssp             CCCSCCCCCCCCC-------------CCSEEECSSS-------CCEEECCCCCCC-------SSSCCCHHHHHTCSCCCS
T ss_pred             cchhHHHHHHHhC-------------CCCCeeCCcc-------cchhCCHHHhCc-------CCCCCCCCCChhhcCHHH
Confidence            3466788888874             8899999998       999999888877       889999999999999999


Q ss_pred             hhhcccc-cCCceeecC-C
Q 006487          163 WKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       163 L~~H~rt-hgeKpy~C~-C  179 (643)
                      |..|+++ +++++|.|+ |
T Consensus        55 l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           55 LNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             SCCCSSCCCCCCCSSCCCC
T ss_pred             HHHHHHhhcCCCCCCCCCC
Confidence            9999999 789999998 7

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.11  E-value=3.3e-11  Score=102.98  Aligned_cols=57  Identities=14%  Similarity=0.342  Sum_probs=53.3

Q ss_pred             ccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc
Q 006487          106 KEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       106 ~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      .+...++|.|++|       ++.|.....|.+|+++|+++|||+|++|+|+|..+..|.+|++.
T Consensus        22 ~~~~~~~h~C~~C-------gk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   78 (85)
T 2lv2_A           22 LSASAECHLCPVC-------GESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK   78 (85)
T ss_dssp             SCCCCTTEECTTS-------CCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHT
T ss_pred             CCCCCCCEECCCC-------CCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcc
Confidence            3457789999999       99999999999999999999999999999999999999999865

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=2.3e-12  Score=104.03  Aligned_cols=71  Identities=17%  Similarity=0.214  Sum_probs=65.0

Q ss_pred             hhhhhcCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhH
Q 006487           56 AEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGI  135 (643)
Q Consensus        56 ~~~l~~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L  135 (643)
                      ...|..|.++|.++++|.|++|++.|.....|..                    +++|.|++|       ++.|.....|
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~--------------------~~~~~C~~C-------~~~f~~~~~l   55 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR--------------------RKTPMCEKC-------RKDSCQEAAL   55 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC--------------------SSSCCCHHH-------HHTCSCCCSS
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc--------------------CCCCCCCCC-------ChhhcCHHHH
Confidence            3457889999999999999999999999888775                    478999998       9999999999


Q ss_pred             HhHhhhccCCcccccccc
Q 006487          136 KKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       136 ~~H~r~H~geKpfkC~~C  153 (643)
                      .+|+++|++++||+|++|
T Consensus        56 ~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           56 NKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCSSCCCCCCCSSCCCC
T ss_pred             HHHHHhhcCCCCCCCCCC
Confidence            999999999999999998

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.09  E-value=6.3e-11  Score=97.46  Aligned_cols=67  Identities=16%  Similarity=0.403  Sum_probs=44.1

Q ss_pred             hhcCccccCCCCccccCcccccccCchhHHhHhh-hcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHh
Q 006487           59 IALSPKTLMATNRFICEVCNKGFQREQNLQLHRR-GHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKK  137 (643)
Q Consensus        59 l~~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r-~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~  137 (643)
                      +..|+++|.++++|+|++|++.|..+..|..|++ .|.            ..+++|.|++|       ++.|.....|.+
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~------------~~~~~~~C~~C-------~~~f~~~~~L~~   63 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHT------------ENVAKFHCPHC-------DTVIARKSDLGV   63 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS------------SSCSSEECSSS-------SCEESSHHHHHH
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcC------------CCCCccCCCCC-------CCccCCHHHHHH
Confidence            4456677777777777777777777777777765 442            11366777776       677777777777


Q ss_pred             HhhhccC
Q 006487          138 HYSRKHG  144 (643)
Q Consensus       138 H~r~H~g  144 (643)
                      |+++|+.
T Consensus        64 H~~~~H~   70 (77)
T 2ct1_A           64 HLRKQHS   70 (77)
T ss_dssp             HHHHTSC
T ss_pred             HHHHhCC
Confidence            7776443

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.05  E-value=6.2e-11  Score=91.38  Aligned_cols=54  Identities=20%  Similarity=0.297  Sum_probs=49.0

Q ss_pred             cCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc
Q 006487          109 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       109 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|++.|..+..|..|+++
T Consensus         1 g~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C            1 GSSSRECSYC-------GKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLER   54 (57)
T ss_dssp             ----CBCTTT-------CCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCccCCCC-------cchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHH
Confidence            3589999998       99999999999999999999999999999999999999999987

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.05  E-value=5.2e-11  Score=96.69  Aligned_cols=62  Identities=21%  Similarity=0.521  Sum_probs=48.2

Q ss_pred             HHhHhh-hccCCcccccc--cccccccchhhhhhcccc-cCCceeecC-CCCCcCChHHHHHHHHHh
Q 006487          135 IKKHYS-RKHGEKKWKCE--KCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       135 L~~H~r-~H~geKpfkC~--~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      +..|+. +|.++++|+|+  .|++.|..+..|..|+++ +++++|.|+ |++.|.++..|.+|+++|
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            344444 46778888886  488888888888888888 778888888 888888888888888876

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=2.1e-10  Score=94.43  Aligned_cols=67  Identities=16%  Similarity=0.255  Sum_probs=38.8

Q ss_pred             cCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhh-hccC
Q 006487           66 LMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYS-RKHG  144 (643)
Q Consensus        66 h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r-~H~g  144 (643)
                      |+++++|+|++|++.|..+..|..|+++|+.          ...+++|.|++|       ++.|.....|.+|++ .|.+
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~----------~~~~~~~~C~~C-------~k~f~~~~~L~~H~~~~H~~   64 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAE----------TVAALRFPCEFC-------GKRFEKPDSVAAHRSKSHPA   64 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHH----------HTTTCCEECTTT-------CCEESSHHHHHHHHHHTSTT
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhc----------cCCCcccCCCCC-------CchhCCHHHHHHHHHHhCCC
Confidence            4556666666666666666666666666630          002556666665       666666666666663 3444


Q ss_pred             Ccccc
Q 006487          145 EKKWK  149 (643)
Q Consensus       145 eKpfk  149 (643)
                      +++..
T Consensus        65 ~~~~~   69 (78)
T 2d9h_A           65 LLLAP   69 (78)
T ss_dssp             TSSCC
T ss_pred             CCCCc
Confidence            44443

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.00  E-value=2e-10  Score=88.41  Aligned_cols=44  Identities=16%  Similarity=0.356  Sum_probs=23.5

Q ss_pred             CCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc
Q 006487          126 SRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       126 ~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      ++.|.....|..|+++|+++++|+|++|++.|.....|..|+++
T Consensus         8 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   51 (57)
T 1bbo_A            8 GIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS   51 (57)
T ss_dssp             CCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHS
T ss_pred             cCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555544

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.99  E-value=2.9e-10  Score=87.55  Aligned_cols=57  Identities=26%  Similarity=0.470  Sum_probs=53.4

Q ss_pred             ccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcc
Q 006487           71 RFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKK  147 (643)
Q Consensus        71 py~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKp  147 (643)
                      ||+|++|++.|.....|..|+++|+             ++++|.|++|       ++.|.....|.+|+++|+++|.
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~kk   57 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHT-------------DVRPYHCTYC-------NFSFKTKGNLTKHMKSKAHSKK   57 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS-------------SCCCEECSSS-------SCEESSHHHHHHHHHSSSSCCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcC-------------CCCCccCCCC-------CchhcCHHHHHHHHHHhcccCC
Confidence            6999999999999999999999995             7899999998       9999999999999999998763

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.99  E-value=1.8e-10  Score=89.78  Aligned_cols=47  Identities=34%  Similarity=0.796  Sum_probs=24.5

Q ss_pred             ccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCChHHHHHHH
Q 006487          147 KWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHR  193 (643)
Q Consensus       147 pfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L~~H~  193 (643)
                      ||+|++|++.|.....|..|+++ +++++|.|+ |++.|.++..|.+|+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   50 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA   50 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHH
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHH
Confidence            45555555555555555555554 444555555 555555555555554

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.99  E-value=1.9e-10  Score=91.45  Aligned_cols=58  Identities=22%  Similarity=0.429  Sum_probs=53.8

Q ss_pred             cccCceeeCCCCCccCCCCCCcccChhhHHhHhhh-c-cCCcccccccccccccchhhhhhcccc-cC
Q 006487          107 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSR-K-HGEKKWKCEKCSKRYAVQSDWKAHSKT-CG  171 (643)
Q Consensus       107 ~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~-H-~geKpfkC~~CgKsF~~ks~L~~H~rt-hg  171 (643)
                      +.++++|.|++|       ++.|.....|.+|+++ | .+++||+|++|++.|..+..|..|+++ |+
T Consensus         5 h~~~k~~~C~~C-------~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            5 KEGEHTYRCKVC-------SRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEETTEEECTTT-------CCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cCCCcceECCCC-------cchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            468999999999       9999999999999998 7 589999999999999999999999998 54

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.95  E-value=4.3e-10  Score=87.60  Aligned_cols=54  Identities=20%  Similarity=0.515  Sum_probs=50.2

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhccc-ccC
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSK-TCG  171 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~r-thg  171 (643)
                      ++|.|++|       ++.|.....|.+|+++|++++||+|++|++.|..+..|..|++ +|.
T Consensus         1 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            1 RSFVCEVC-------TRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CCBCCTTT-------CCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcCcCCCC-------ccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            57999998       9999999999999999999999999999999999999999975 454

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=5.2e-10  Score=95.13  Aligned_cols=62  Identities=18%  Similarity=0.213  Sum_probs=50.7

Q ss_pred             CccccCcccccccCchhHHhHhhh-cCCCccccccccccccCce--------eeCCCCCccCCCCCCcccChhhHHhHhh
Q 006487           70 NRFICEVCNKGFQREQNLQLHRRG-HNLPWKLKQKTTKEVKRKV--------YLCPEPTCVHHDPSRALGDLTGIKKHYS  140 (643)
Q Consensus        70 kpy~C~~CgK~F~~~~~L~~H~r~-H~~~~~~~~~~~~~~~~k~--------y~C~~C~C~~~~~~k~F~~~s~L~~H~r  140 (643)
                      ..|.|++|++.|.....|..|+++ |.             ++++        |.|++|       ++.|.....|.+|++
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~-------------~~~~~~~~~c~~~~C~~C-------~k~f~~~~~L~~H~~   83 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHV-------------GGPEQNNHVCYWEECPRE-------GKSFKAKYKLVNHIR   83 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTT-------------CCTTCSCCCCCCTTCSST-------TCCCSSHHHHHHHHH
T ss_pred             CCCcccccccccCCHHHHHHHHHHhcc-------------CCCCCCccceeccCCCCC-------CcccCCHHHHHHHHH
Confidence            357899999999999999999988 64             3444        777777       888888888888888


Q ss_pred             hccCCcccccc
Q 006487          141 RKHGEKKWKCE  151 (643)
Q Consensus       141 ~H~geKpfkC~  151 (643)
                      +|++++||+|+
T Consensus        84 ~H~~~k~~~C~   94 (95)
T 2ej4_A           84 VHTGEKSGPSS   94 (95)
T ss_dssp             HHHTCCCCSSC
T ss_pred             hcCCCCCCCCC
Confidence            88888888886

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.93  E-value=3.7e-10  Score=91.59  Aligned_cols=56  Identities=21%  Similarity=0.513  Sum_probs=52.7

Q ss_pred             ccCceeeCCC--CCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhccccc
Q 006487          108 VKRKVYLCPE--PTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTC  170 (643)
Q Consensus       108 ~~~k~y~C~~--C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rth  170 (643)
                      .++++|.|++  |       ++.|.....|.+|+++|+++++|+|++|++.|..+..|..|+++|
T Consensus        15 ~~~~~~~C~~~~C-------~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           15 PKMRPYACPVESC-------DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCEECSSTTB-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             CCCCccCCcCCCC-------CCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            5889999974  6       999999999999999999999999999999999999999999874

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=7.9e-10  Score=93.99  Aligned_cols=61  Identities=11%  Similarity=0.177  Sum_probs=53.1

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhh-ccCCcc--------cccccccccccchhhhhhcccc-cCCceeecC
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSR-KHGEKK--------WKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~-H~geKp--------fkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      ..|.|++|       ++.|.....|.+|+++ |.++++        |+|++|++.|..+..|..|+++ ++++||.|+
T Consensus        24 ~~~~C~~C-------~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKSC-------DRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSSCCCC-------CCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCCccccc-------ccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            44678877       9999999999999998 888877        8999999999999999999998 788999884

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=6.9e-10  Score=81.94  Aligned_cols=43  Identities=23%  Similarity=0.400  Sum_probs=32.4

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            466777777777777777777777777777777 677777776 6

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.86  E-value=6.7e-10  Score=82.03  Aligned_cols=43  Identities=26%  Similarity=0.498  Sum_probs=32.7

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            467777777777777777777777777777777 677777776 6

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.84  E-value=6.4e-10  Score=82.13  Aligned_cols=43  Identities=28%  Similarity=0.492  Sum_probs=30.8

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            466677777777777777777777777777777 667777776 5

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=6.3e-10  Score=82.06  Aligned_cols=43  Identities=21%  Similarity=0.376  Sum_probs=32.7

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            467777777777777777777777777777777 677777776 6

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.84  E-value=6.8e-10  Score=81.87  Aligned_cols=43  Identities=21%  Similarity=0.441  Sum_probs=31.8

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            466777777777777777777777777777777 667777776 6

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.84  E-value=6.6e-10  Score=82.18  Aligned_cols=43  Identities=21%  Similarity=0.437  Sum_probs=31.0

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466677777777777777777777777777777 667777776 5

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=7.6e-10  Score=81.59  Aligned_cols=43  Identities=23%  Similarity=0.402  Sum_probs=32.2

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466777777777777777777777777777777 677777776 6

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=6.6e-10  Score=82.04  Aligned_cols=43  Identities=21%  Similarity=0.426  Sum_probs=30.1

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            466667777777777777777777777777776 566777776 5

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=8.5e-10  Score=81.32  Aligned_cols=43  Identities=26%  Similarity=0.461  Sum_probs=33.7

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            467777788888888888888888888888777 677788887 6

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=8.5e-10  Score=81.57  Aligned_cols=42  Identities=24%  Similarity=0.426  Sum_probs=30.1

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      |+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66677777777777777777777777777777 566777776 5

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=7.9e-10  Score=81.49  Aligned_cols=43  Identities=30%  Similarity=0.496  Sum_probs=32.3

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            467777777777777777777777777777777 677777776 6

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=9.6e-10  Score=81.15  Aligned_cols=42  Identities=21%  Similarity=0.385  Sum_probs=30.6

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      |+++|++++||+|++|++.|..+..|.+|+++ +++++|.|+ |
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66677777777777777777777777777777 667777776 5

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.2e-09  Score=80.84  Aligned_cols=42  Identities=26%  Similarity=0.415  Sum_probs=30.2

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56667777777777777777777777777777 567777776 5

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=8e-10  Score=81.60  Aligned_cols=43  Identities=26%  Similarity=0.417  Sum_probs=30.7

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      .|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            366677777777777777777777777777777 566777776 6

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=7.4e-10  Score=81.65  Aligned_cols=43  Identities=26%  Similarity=0.455  Sum_probs=32.9

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467777777777777777777777777777777 677777776 6

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=8.4e-10  Score=81.47  Aligned_cols=43  Identities=26%  Similarity=0.455  Sum_probs=31.8

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466777777777777777777777777777777 667777776 6

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=7.5e-10  Score=81.64  Aligned_cols=43  Identities=23%  Similarity=0.409  Sum_probs=30.4

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            466677777777777777777777777777776 566777776 5

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=5.1e-10  Score=82.76  Aligned_cols=43  Identities=21%  Similarity=0.357  Sum_probs=29.3

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            466666667777777777777777777777666 566677766 5

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=8.6e-10  Score=81.41  Aligned_cols=43  Identities=26%  Similarity=0.386  Sum_probs=30.8

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466677777777777777777777777777776 567777776 5

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=7.1e-10  Score=81.89  Aligned_cols=43  Identities=21%  Similarity=0.434  Sum_probs=29.0

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            466666666677777777777777777777666 566667666 5

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=7.9e-10  Score=81.50  Aligned_cols=43  Identities=21%  Similarity=0.434  Sum_probs=31.2

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            466777777777777777777777777777777 567777776 6

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.81  E-value=9.4e-10  Score=81.32  Aligned_cols=42  Identities=29%  Similarity=0.454  Sum_probs=30.1

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      |+++|++++||+|++|++.|..+..|.+|+++ ++++||+|+ |
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66677777777777777777777777777777 667777776 5

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=8.2e-10  Score=81.54  Aligned_cols=43  Identities=26%  Similarity=0.397  Sum_probs=28.3

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            356666666666666666666666666666666 566666665 5

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.81  E-value=9.8e-10  Score=80.99  Aligned_cols=43  Identities=23%  Similarity=0.394  Sum_probs=30.2

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      .|+++|++++||+|++|++.|..+..|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            366677777777777777777777777777776 566777776 5

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.1e-09  Score=80.90  Aligned_cols=42  Identities=26%  Similarity=0.419  Sum_probs=29.3

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      |+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            56666777777777777777777777777766 566777776 5

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=7e-10  Score=81.92  Aligned_cols=42  Identities=24%  Similarity=0.429  Sum_probs=29.5

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS   44 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCS
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCC
Confidence            466677777777777777777777777777766 566777776

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=7.1e-10  Score=81.89  Aligned_cols=43  Identities=23%  Similarity=0.387  Sum_probs=29.4

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||+|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466666667777777777777777777777666 566677766 5

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=7e-10  Score=81.80  Aligned_cols=43  Identities=21%  Similarity=0.390  Sum_probs=28.2

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            356666666666666666666666666666666 566666665 5

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=7.3e-10  Score=81.94  Aligned_cols=43  Identities=16%  Similarity=0.374  Sum_probs=30.3

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            466677777777777777777777777777766 566777776 5

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=6.9e-10  Score=81.94  Aligned_cols=43  Identities=26%  Similarity=0.445  Sum_probs=30.4

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            366677777777777777777777777777776 567777776 5

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=1.1e-09  Score=80.86  Aligned_cols=42  Identities=29%  Similarity=0.478  Sum_probs=27.2

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      |+++|++++||+|++|+|.|..+..|..|+++ ++++||.|+ |
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55666666666666666666666666666666 566666665 5

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=8.4e-10  Score=81.48  Aligned_cols=43  Identities=30%  Similarity=0.550  Sum_probs=34.3

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477778888888888888888888888888877 677888887 6

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=7.4e-10  Score=81.78  Aligned_cols=42  Identities=24%  Similarity=0.414  Sum_probs=26.7

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            355666666666666666666666666666666 566666665

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=8.4e-10  Score=81.47  Aligned_cols=42  Identities=26%  Similarity=0.457  Sum_probs=27.2

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCC
Confidence            355666666666666666666666666666666 566666665

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=9.8e-10  Score=81.10  Aligned_cols=43  Identities=23%  Similarity=0.431  Sum_probs=29.5

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            466666677777777777777777777777666 566777776 5

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=9.3e-10  Score=80.45  Aligned_cols=41  Identities=24%  Similarity=0.377  Sum_probs=24.4

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      |+++|++++||+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS   42 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            44555566666666666666666666666655 555666665

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.1e-09  Score=80.94  Aligned_cols=42  Identities=26%  Similarity=0.478  Sum_probs=31.3

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            466777777777777777777777777777777 667777776

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=9.2e-10  Score=81.27  Aligned_cols=43  Identities=26%  Similarity=0.454  Sum_probs=28.6

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      .|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            356666666666666666666666666666666 566666666 5

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=9.1e-10  Score=81.16  Aligned_cols=43  Identities=26%  Similarity=0.387  Sum_probs=29.1

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366666666777777777777777777777666 566667666 5

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=2.3e-09  Score=85.64  Aligned_cols=53  Identities=15%  Similarity=0.271  Sum_probs=41.1

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccc-cccccccchhhhhhcccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE-KCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~-~CgKsF~~ks~L~~H~rt  169 (643)
                      -.+++|.|++|       ++.|. ...|+.|+++ ++++||+|+ +|++.|..+..|..|+++
T Consensus         6 C~~~~~~C~~C-------~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~   59 (66)
T 2eod_A            6 SGKRTQPCTYC-------TKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKD   59 (66)
T ss_dssp             CCCCEEECSSS-------CCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred             CCCCCeecccc-------CCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHh
Confidence            35677888777       77787 7778888777 777888887 788888777777777776

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.78  E-value=1.8e-09  Score=87.32  Aligned_cols=56  Identities=21%  Similarity=0.478  Sum_probs=39.4

Q ss_pred             cccCceeeCCC--CCccCCCCCCcccChhhHHhHhhhccCCccccccc--ccccccchhhhhhcccc
Q 006487          107 EVKRKVYLCPE--PTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEK--CSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       107 ~~~~k~y~C~~--C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~--CgKsF~~ks~L~~H~rt  169 (643)
                      ....++|.|++  |       ++.|.....|.+|+++|++++||+|.+  |++.|..+..|.+|+++
T Consensus        12 ~~~~~~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           12 SSRIRSHICSHPGC-------GKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCCEECSSTTT-------CCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             ccccCceeCCCCCC-------ccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            34566777766  5       777777777777777777777777754  77777777777777664

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1.3e-09  Score=80.67  Aligned_cols=42  Identities=29%  Similarity=0.454  Sum_probs=29.8

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      |+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56667777777777777777777777777776 666777776 5

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=3.3e-09  Score=84.77  Aligned_cols=59  Identities=17%  Similarity=0.222  Sum_probs=53.4

Q ss_pred             CCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCC-CCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487           67 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCP-EPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus        67 ~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~-~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      -++++|+|++|++.|. ...|..|+++ .             ++++|.|+ +|       ++.|.....|..|+++|..+
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~-------------~~~p~~C~~~C-------~k~f~~~~~L~~H~~~hc~~   63 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-C-------------PRLPVACPNQC-------GVGTVAREDLPGHLKDSCNT   63 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-C-------------SSSEEECTTCC-------SCCEEETTTHHHHHHTTSSS
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-c-------------CCcCccCCccc-------CcccccHHHHHHHHHhhccc
Confidence            4568999999999999 9999999988 5             78999999 98       99999999999999999876


Q ss_pred             cc
Q 006487          146 KK  147 (643)
Q Consensus       146 Kp  147 (643)
                      ++
T Consensus        64 ~~   65 (66)
T 2eod_A           64 AL   65 (66)
T ss_dssp             CC
T ss_pred             Cc
Confidence            65

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.77  E-value=1.4e-09  Score=80.31  Aligned_cols=41  Identities=17%  Similarity=0.316  Sum_probs=26.1

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      |+++|++++||+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS   44 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            55566666666666666666666666666666 556666665

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.7e-09  Score=79.90  Aligned_cols=43  Identities=19%  Similarity=0.335  Sum_probs=31.2

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhccc-c-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSK-T-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~r-t-hgeKpy~C~-C  179 (643)
                      .|+++|++++||+|++|++.|..+..|..|++ + ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            36677777777777777777777777777777 6 567777776 6

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1e-09  Score=81.04  Aligned_cols=43  Identities=28%  Similarity=0.461  Sum_probs=29.9

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      .|+++|+++++|+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            366667777777777777777777777777766 566777776 5

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.2e-09  Score=80.56  Aligned_cols=42  Identities=36%  Similarity=0.536  Sum_probs=29.2

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-C
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  179 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-C  179 (643)
                      |+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            56666777777777777777777777777766 566777776 5

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.77  E-value=4e-09  Score=85.25  Aligned_cols=56  Identities=30%  Similarity=0.624  Sum_probs=51.6

Q ss_pred             hccCCccccccc--ccccccchhhhhhcccc-cCCceeec--C-CCCCcCChHHHHHHHHHh
Q 006487          141 RKHGEKKWKCEK--CSKRYAVQSDWKAHSKT-CGTREYRC--D-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       141 ~H~geKpfkC~~--CgKsF~~ks~L~~H~rt-hgeKpy~C--~-CgK~F~~ks~L~~H~~~H  196 (643)
                      .+..+++|.|.+  |++.|.....|..|+++ +++++|.|  + |++.|.++..|.+|+++|
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            455678999999  99999999999999999 78999999  5 999999999999999876

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.77  E-value=5.8e-10  Score=88.56  Aligned_cols=51  Identities=22%  Similarity=0.383  Sum_probs=33.2

Q ss_pred             HHhHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCChHH
Q 006487          135 IKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDS  188 (643)
Q Consensus       135 L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~  188 (643)
                      |..|+++|++++||+|++|++.|.....|.   ++ +++++|.|+ |++.|.....
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~   54 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDES   54 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTT
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcc
Confidence            345666677777777777777776666665   44 566777776 7777765543

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=1.5e-09  Score=80.08  Aligned_cols=41  Identities=29%  Similarity=0.528  Sum_probs=24.6

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      |+++|++++||+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS   44 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCC
Confidence            45556666666666666666666666666655 455666665

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.76  E-value=2.6e-09  Score=82.09  Aligned_cols=46  Identities=15%  Similarity=0.278  Sum_probs=31.9

Q ss_pred             cccCceeeCCCCCccCCCCCCcccChhhHHhHhh-hccCCcccccccccccccc
Q 006487          107 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYS-RKHGEKKWKCEKCSKRYAV  159 (643)
Q Consensus       107 ~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r-~H~geKpfkC~~CgKsF~~  159 (643)
                      +..+++|.|++|       ++.|.....|.+|++ +|++++||+|++|++.|..
T Consensus         7 ~~~~k~~~C~~C-------~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSC-------GKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSS-------CCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCC-------CcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            456667777776       677777777777765 6777777777777777654

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=1.6e-09  Score=79.99  Aligned_cols=41  Identities=17%  Similarity=0.247  Sum_probs=25.4

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||+|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPS   44 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTT
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            55566666666666666666666666666666 556666665

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.9e-09  Score=79.65  Aligned_cols=41  Identities=29%  Similarity=0.471  Sum_probs=24.1

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      |+++|.+++||+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS   44 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCC
Confidence            45555555666666666666666666666555 455566655

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=7e-09  Score=76.43  Aligned_cols=45  Identities=22%  Similarity=0.263  Sum_probs=42.0

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTS-------------CCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcC-------------CCCCCCCCCC
Confidence            57889999999999999999999999999999995             8899999987

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=3.5e-09  Score=78.08  Aligned_cols=42  Identities=21%  Similarity=0.445  Sum_probs=34.6

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            477788888888888888888888888888888 678888885

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=3.6e-09  Score=76.24  Aligned_cols=41  Identities=20%  Similarity=0.479  Sum_probs=36.1

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeec
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  177 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C  177 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            478888999999999999999999999999988 78889887

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=7.1e-09  Score=79.60  Aligned_cols=45  Identities=20%  Similarity=0.351  Sum_probs=41.7

Q ss_pred             hccCCcccccccccccccchhhhhhccc-c-cCCceeecC-CCCCcCC
Q 006487          141 RKHGEKKWKCEKCSKRYAVQSDWKAHSK-T-CGTREYRCD-CGTLFSR  185 (643)
Q Consensus       141 ~H~geKpfkC~~CgKsF~~ks~L~~H~r-t-hgeKpy~C~-CgK~F~~  185 (643)
                      .|.+++||+|++|++.|..+..|.+|++ + +++++|+|+ |++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            4778999999999999999999999997 6 689999999 9999976

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.4e-09  Score=79.07  Aligned_cols=41  Identities=24%  Similarity=0.452  Sum_probs=26.8

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      |+++|+++++|+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSS
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            55666666666666666666666666666666 566666665

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=7.2e-09  Score=76.24  Aligned_cols=45  Identities=24%  Similarity=0.274  Sum_probs=42.1

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|+++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCC-------------SSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            57889999999999999999999999999999995             7899999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.71  E-value=7.7e-09  Score=76.08  Aligned_cols=45  Identities=22%  Similarity=0.280  Sum_probs=42.0

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHT-------------GVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSS-------------SCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            57889999999999999999999999999999995             8899999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=8.8e-09  Score=76.00  Aligned_cols=45  Identities=29%  Similarity=0.421  Sum_probs=41.7

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM-------------GEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGG-------------SCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            47788999999999999999999999999999995             7899999987

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=3.5e-09  Score=78.09  Aligned_cols=42  Identities=26%  Similarity=0.434  Sum_probs=33.6

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            477778888888888888888888888888887 677888875

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.70  E-value=8.1e-09  Score=76.21  Aligned_cols=45  Identities=27%  Similarity=0.372  Sum_probs=41.9

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHS-------------CCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999995             7899999987

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.70  E-value=3.3e-09  Score=76.53  Aligned_cols=41  Identities=22%  Similarity=0.482  Sum_probs=31.8

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      |+++|++++||+|++|++.|..+..|.+|+++ +++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            56677778888888888888888888888777 677788774

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=4.2e-09  Score=77.75  Aligned_cols=42  Identities=29%  Similarity=0.562  Sum_probs=34.7

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            577888888888888888888888888888888 678888885

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=3.5e-09  Score=77.08  Aligned_cols=42  Identities=24%  Similarity=0.395  Sum_probs=35.2

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            477888888888888888888888888888888 678888884

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=3.9e-09  Score=77.73  Aligned_cols=42  Identities=24%  Similarity=0.457  Sum_probs=33.6

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|+++++|+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            477778888888888888888888888888887 677888875

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=9e-09  Score=75.94  Aligned_cols=45  Identities=22%  Similarity=0.285  Sum_probs=41.7

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTC-------------CSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999995             7899999987

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=3.6e-09  Score=78.02  Aligned_cols=42  Identities=26%  Similarity=0.489  Sum_probs=33.5

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            477778888888888888888888888888887 677888875

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=9.2e-09  Score=75.66  Aligned_cols=45  Identities=20%  Similarity=0.223  Sum_probs=41.9

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHT-------------GENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTT-------------TSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            57889999999999999999999999999999995             7899999987

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=3.2e-09  Score=78.40  Aligned_cols=42  Identities=24%  Similarity=0.472  Sum_probs=33.1

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            467778888888888888888888888888877 677888875

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=8.7e-09  Score=75.92  Aligned_cols=45  Identities=20%  Similarity=0.358  Sum_probs=42.0

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTS-------------SCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            57889999999999999999999999999999995             8899999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=9.4e-09  Score=75.62  Aligned_cols=45  Identities=22%  Similarity=0.299  Sum_probs=41.9

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTT-------------TCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            57889999999999999999999999999999995             7899999987

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=3.9e-09  Score=77.83  Aligned_cols=42  Identities=26%  Similarity=0.445  Sum_probs=33.9

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            477788888888888888888888888888887 677888875

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=4.1e-09  Score=75.91  Aligned_cols=41  Identities=20%  Similarity=0.352  Sum_probs=32.0

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      |+++|++++||+|++|++.|..+..|.+|+++ +++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            56777788888888888888888888888877 677788773

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=8.2e-09  Score=75.93  Aligned_cols=45  Identities=22%  Similarity=0.256  Sum_probs=41.9

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHT-------------GVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGS-------------CCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            57889999999999999999999999999999995             7899999987

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=4.3e-09  Score=77.68  Aligned_cols=42  Identities=26%  Similarity=0.492  Sum_probs=33.2

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            467778888888888888888888888888877 677888875

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=9.4e-09  Score=75.73  Aligned_cols=45  Identities=22%  Similarity=0.299  Sum_probs=41.9

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGS-------------SCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            57889999999999999999999999999999995             7899999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=1e-08  Score=75.43  Aligned_cols=45  Identities=22%  Similarity=0.250  Sum_probs=42.0

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHV-------------DDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCC-------------SCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            57889999999999999999999999999999995             7899999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.68  E-value=9e-09  Score=75.83  Aligned_cols=39  Identities=18%  Similarity=0.252  Sum_probs=37.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            8 MGEKTWKCREC-------DMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSS-------CCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCCcCeECCCC-------CcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            48999999998       9999999999999999999999999998

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=4e-09  Score=77.64  Aligned_cols=42  Identities=24%  Similarity=0.452  Sum_probs=32.4

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            467777778888888888888888888888777 677777774

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.68  E-value=3.2e-09  Score=84.25  Aligned_cols=58  Identities=16%  Similarity=0.297  Sum_probs=49.7

Q ss_pred             HHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhc
Q 006487           87 LQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAH  166 (643)
Q Consensus        87 L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H  166 (643)
                      |..|+++|             .++++|.|++|       ++.|.....|.   ++|++++||+|++|++.|.....+..+
T Consensus         2 L~~h~~~H-------------~~~k~~~C~~C-------~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~~~   58 (62)
T 1vd4_A            2 IETDERDS-------------TNRASFKCPVC-------SSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAMPK   58 (62)
T ss_dssp             CCCCSSSC-------------CSSSEEECSSS-------CCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCSCC
T ss_pred             hhhHHHHc-------------CCCCCccCCCC-------CchhccHHHhH---hhcCCCCCEECCCCCCccccCcccccc
Confidence            45667766             48999999999       99999988886   889999999999999999998887655


Q ss_pred             c
Q 006487          167 S  167 (643)
Q Consensus       167 ~  167 (643)
                      .
T Consensus        59 ~   59 (62)
T 1vd4_A           59 K   59 (62)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=4.5e-09  Score=77.45  Aligned_cols=42  Identities=24%  Similarity=0.423  Sum_probs=32.3

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      .|+++|++++||+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            367777777888888888888888888888777 677777775

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=8.1e-09  Score=76.09  Aligned_cols=45  Identities=24%  Similarity=0.302  Sum_probs=41.9

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHT-------------GGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHH-------------SCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            57889999999999999999999999999999995             7899999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1e-08  Score=75.61  Aligned_cols=39  Identities=21%  Similarity=0.218  Sum_probs=37.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            8 TGGKHFECTEC-------GKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCCEECSSS-------CCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             CCCCCeECCCC-------CchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            48999999998       9999999999999999999999999988

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.67  E-value=9.1e-09  Score=75.79  Aligned_cols=39  Identities=21%  Similarity=0.261  Sum_probs=37.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            8 TGEKRYKCNEC-------GKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             TTSCCEECSSS-------CCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCCcCcCCCCC-------cchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            58999999999       9999999999999999999999999988

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1.1e-08  Score=75.44  Aligned_cols=45  Identities=22%  Similarity=0.276  Sum_probs=41.7

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTT-------------TSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            57889999999999999999999999999999995             7899999875

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=9.3e-09  Score=75.76  Aligned_cols=39  Identities=18%  Similarity=0.203  Sum_probs=37.5

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            8 TGEKPYECSVC-------GKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             SSCCSEECSSS-------CCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CCCCCeeCCCc-------CCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            58999999998       9999999999999999999999999998

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=3.8e-09  Score=76.98  Aligned_cols=42  Identities=24%  Similarity=0.440  Sum_probs=35.6

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      .|+++|++++||+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            477888888888888888888888888888888 678888884

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=3.4e-09  Score=78.00  Aligned_cols=42  Identities=29%  Similarity=0.502  Sum_probs=29.8

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            466677777777777777777777777777776 667777764

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=3.2e-09  Score=78.29  Aligned_cols=42  Identities=29%  Similarity=0.496  Sum_probs=31.6

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            467777777777777777777777777777777 677777774

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.67  E-value=9.1e-09  Score=75.93  Aligned_cols=39  Identities=26%  Similarity=0.291  Sum_probs=37.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            8 TGEKPYECKEC-------GKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSCBCSSS-------CCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCceECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            58999999998       9999999999999999999999999998

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=5.7e-09  Score=77.12  Aligned_cols=41  Identities=32%  Similarity=0.503  Sum_probs=31.6

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      |+++|++++||+|++|++.|..+..|.+|+++ +++++|.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            56777777788888888888888888888777 677777775

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=3.2e-09  Score=78.44  Aligned_cols=42  Identities=29%  Similarity=0.514  Sum_probs=32.1

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            467777777778887788777777777777777 677777775

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=9e-09  Score=75.82  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=37.5

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            8 TGEKPYKCHEC-------GKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             TCCCCEECTTT-------CCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCCCeECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            58999999999       9999999999999999999999999998

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.67  E-value=1.2e-08  Score=75.27  Aligned_cols=45  Identities=24%  Similarity=0.351  Sum_probs=41.7

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT-------------REKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGC-------------CSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            47888999999999999999999999999999995             7899999987

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.67  E-value=3.4e-09  Score=78.24  Aligned_cols=42  Identities=24%  Similarity=0.515  Sum_probs=29.9

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            366677777777777777777777777777777 667777764

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=4.1e-09  Score=77.60  Aligned_cols=42  Identities=24%  Similarity=0.505  Sum_probs=31.9

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            467777777777777777777777777777777 677777775

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=4.9e-09  Score=77.27  Aligned_cols=42  Identities=21%  Similarity=0.455  Sum_probs=31.3

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      .|+++|+++++|+|++|++.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            366777777777777777777777777777777 677777774

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.1e-08  Score=75.36  Aligned_cols=39  Identities=23%  Similarity=0.323  Sum_probs=37.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|++|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            8 TGEKPFDCIDC-------GKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSBCCTTT-------CCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCeECCCC-------CceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            58899999998       9999999999999999999999999998

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=5.1e-09  Score=77.28  Aligned_cols=41  Identities=22%  Similarity=0.458  Sum_probs=31.6

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      |+++|++++||+|++|++.|..+..|.+|+++ +++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            66777777788888888888877788888777 677777774

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1e-08  Score=75.49  Aligned_cols=45  Identities=27%  Similarity=0.341  Sum_probs=41.9

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGS-------------CCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            57889999999999999999999999999999995             7899999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=9e-09  Score=75.71  Aligned_cols=39  Identities=15%  Similarity=0.126  Sum_probs=37.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            8 TGERPHKCNEC-------GKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSEECSSS-------CCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCCCCeeCCCC-------ChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            48899999998       9999999999999999999999999998

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.2e-08  Score=75.23  Aligned_cols=39  Identities=21%  Similarity=0.161  Sum_probs=37.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            8 TGEKPYKCEEC-------GKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSEECSSS-------CCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCcCccCCCc-------cchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            58899999998       9999999999999999999999999998

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=9.4e-09  Score=75.71  Aligned_cols=45  Identities=22%  Similarity=0.389  Sum_probs=41.7

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT-------------GERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSC-------------SCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhC-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999995             7899999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=9.6e-09  Score=75.68  Aligned_cols=39  Identities=21%  Similarity=0.239  Sum_probs=37.5

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            8 TGEKPYKCNEC-------GKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSEECSSS-------CCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CCCCCeECCCC-------CchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            48999999998       9999999999999999999999999998

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=4e-09  Score=77.63  Aligned_cols=42  Identities=26%  Similarity=0.504  Sum_probs=29.4

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            366667777777777777777777777777776 566777764

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=3.9e-09  Score=76.81  Aligned_cols=42  Identities=26%  Similarity=0.513  Sum_probs=32.4

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            467777778888888888888888888888777 677777774

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=3.2e-09  Score=78.40  Aligned_cols=42  Identities=19%  Similarity=0.349  Sum_probs=33.3

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            477778888888888888888888888888877 677888775

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=5.9e-09  Score=75.30  Aligned_cols=40  Identities=25%  Similarity=0.463  Sum_probs=32.5

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeec
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  177 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C  177 (643)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            66778888888888888888888888888888 67788877

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=9.1e-09  Score=75.80  Aligned_cols=39  Identities=23%  Similarity=0.326  Sum_probs=37.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            8 TGERPYICTVC-------GKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSEECTTT-------CCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCcCCCCC-------CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            58899999998       9999999999999999999999999998

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=9.9e-09  Score=75.61  Aligned_cols=39  Identities=21%  Similarity=0.290  Sum_probs=37.5

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            8 SGEKPYKCNEC-------GKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSEECSSS-------CCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCCCCEeCCcC-------CCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            58999999998       9999999999999999999999999998

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=4.5e-09  Score=77.57  Aligned_cols=41  Identities=20%  Similarity=0.455  Sum_probs=29.1

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            66667777777777777777777777777776 666777764

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=5.3e-09  Score=77.20  Aligned_cols=42  Identities=24%  Similarity=0.457  Sum_probs=30.9

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      .|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            366777777777777777777777777777777 677777774

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=9.1e-09  Score=75.80  Aligned_cols=39  Identities=23%  Similarity=0.298  Sum_probs=37.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            8 TGVKPYMCNEC-------GKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSEECSSS-------CCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CCCcCeECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            48999999998       9999999999999999999999999998

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=7.4e-09  Score=76.42  Aligned_cols=41  Identities=22%  Similarity=0.483  Sum_probs=32.2

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            56777778888888888888888888888877 677888775

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=1.1e-08  Score=75.29  Aligned_cols=39  Identities=18%  Similarity=0.167  Sum_probs=37.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|++|+++|++++||+|++|
T Consensus         8 ~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            8 SGEKSHTCDEC-------GKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCSSEECTTT-------CCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CCCCCeECCCc-------CcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            48899999999       9999999999999999999999999998

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1e-08  Score=75.48  Aligned_cols=39  Identities=21%  Similarity=0.215  Sum_probs=37.5

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            8 TGENPYECHEC-------GKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCEECSSS-------CCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCcCcCCCCC-------CcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            58999999998       9999999999999999999999999998

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.1e-08  Score=75.28  Aligned_cols=39  Identities=21%  Similarity=0.225  Sum_probs=37.3

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            8 TGEKPYICAEC-------GKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSCCSEECSSS-------CCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CCCcCeECCCC-------ChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            48899999998       9999999999999999999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.1e-08  Score=75.31  Aligned_cols=39  Identities=13%  Similarity=0.140  Sum_probs=37.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            8 TGEKPFKCDIC-------GKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCSSS-------CCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCcCCCcC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            48899999998       9999999999999999999999999998

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.65  E-value=1.3e-08  Score=74.82  Aligned_cols=39  Identities=23%  Similarity=0.217  Sum_probs=37.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            8 TGEKPYNCKEC-------GKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSS-------CCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCcCeECCcc-------ccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            58899999998       9999999999999999999999999998

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=4.5e-09  Score=76.74  Aligned_cols=42  Identities=21%  Similarity=0.428  Sum_probs=32.6

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            467777778888888888888888888888777 677777774

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=8.2e-09  Score=76.15  Aligned_cols=39  Identities=21%  Similarity=0.283  Sum_probs=37.5

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            8 SGERPYGCNEC-------GKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             SCCCCEECSSS-------CCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCEEcccc-------CcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            58999999999       9999999999999999999999999998

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.1e-08  Score=75.17  Aligned_cols=39  Identities=15%  Similarity=0.227  Sum_probs=37.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            8 TGEKPYKCSDC-------GKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             SSCCSCBCSSS-------CCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCccCCcc-------ChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            48899999998       9999999999999999999999999998

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.3e-08  Score=74.87  Aligned_cols=39  Identities=23%  Similarity=0.271  Sum_probs=37.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            8 SGEKPYVCDYC-------GKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSS-------CCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCeECCCC-------ChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            48899999998       9999999999999999999999999998

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=1.1e-08  Score=75.38  Aligned_cols=39  Identities=21%  Similarity=0.168  Sum_probs=37.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            8 SSTKSHQCHEC-------GRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSEECSSS-------CCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCCCeECCcC-------CCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            48899999998       9999999999999999999999999998

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=5.1e-09  Score=77.05  Aligned_cols=42  Identities=26%  Similarity=0.516  Sum_probs=35.7

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            477888888888888888888888888888888 688888885

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=4.6e-09  Score=76.70  Aligned_cols=42  Identities=21%  Similarity=0.389  Sum_probs=33.4

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            477778888888888888888888888888887 677888773

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=1.2e-08  Score=74.34  Aligned_cols=39  Identities=15%  Similarity=0.080  Sum_probs=37.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         6 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            6 SGEKPFGCSCC-------EKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             SSCCCEECSSS-------SCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCcCccCCCC-------CcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            58999999998       9999999999999999999999999998

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.1e-08  Score=75.28  Aligned_cols=39  Identities=21%  Similarity=0.226  Sum_probs=37.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            8 SGEKPYKCSEC-------GKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSS-------CCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCCcCeECCCC-------CCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            48899999998       9999999999999999999999999998

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.1e-08  Score=75.43  Aligned_cols=45  Identities=22%  Similarity=0.282  Sum_probs=41.9

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHS-------------SCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999995             7899999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=6.5e-09  Score=76.59  Aligned_cols=40  Identities=18%  Similarity=0.148  Sum_probs=20.3

Q ss_pred             cccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          107 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       107 ~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      |.++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         7 h~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            7 GTGEKPYKCDVC-------HKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCSEECSSS-------CCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCeeCccc-------CcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            344455555554       4555555555555555555555555544

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=4.7e-09  Score=77.24  Aligned_cols=42  Identities=26%  Similarity=0.502  Sum_probs=29.1

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      .|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            366667777777777777777777777777766 566777764

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=5.2e-09  Score=75.47  Aligned_cols=40  Identities=28%  Similarity=0.507  Sum_probs=30.3

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeec
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  177 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C  177 (643)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            56677777777777777777777777777777 67777776

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=4.9e-09  Score=77.37  Aligned_cols=42  Identities=21%  Similarity=0.415  Sum_probs=31.8

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|.+++||+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            467777777777777777777777777777777 677777775

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.62  E-value=5.3e-09  Score=80.22  Aligned_cols=51  Identities=16%  Similarity=0.180  Sum_probs=42.7

Q ss_pred             CCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc-cCCceee
Q 006487          126 SRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYR  176 (643)
Q Consensus       126 ~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~  176 (643)
                      ++.|.....|..|+++|++++||.|++|++.|.....|..|+++ ++++||+
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            57778888888888888888888888888888888888888888 7788773

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=2.1e-08  Score=73.98  Aligned_cols=45  Identities=22%  Similarity=0.229  Sum_probs=41.6

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhh-hcCCCccccccccccccCceeeCCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRR-GHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r-~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      .|.++|.++++|+|++|++.|..+..|..|++ +|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~-------------~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT-------------GEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTT-------------TSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcC-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999 885             7899999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=1.6e-08  Score=74.44  Aligned_cols=39  Identities=18%  Similarity=0.157  Sum_probs=37.5

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            8 SGEKPFKCEEC-------GKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSS-------CCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCcCCCCC-------CCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            58999999998       9999999999999999999999999998

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.61  E-value=6.9e-09  Score=74.70  Aligned_cols=40  Identities=15%  Similarity=0.390  Sum_probs=29.7

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeec
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  177 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C  177 (643)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            56677777777777777777777777777777 67777776

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=1.7e-08  Score=74.30  Aligned_cols=39  Identities=15%  Similarity=0.131  Sum_probs=37.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            8 SREKSHQCREC-------GEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             SCCCCEECTTT-------CCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CCCCCEEcccc-------ChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            58899999999       9999999999999999999999999998

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=4.4e-09  Score=76.77  Aligned_cols=42  Identities=17%  Similarity=0.276  Sum_probs=36.0

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|.....|..|+++ ++++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            578888888899999999999999999999888 788888883

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.4e-08  Score=75.02  Aligned_cols=39  Identities=23%  Similarity=0.323  Sum_probs=37.5

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            8 TGEKPYKCMEC-------GKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SSCCSSSBTTT-------TBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCCcCCCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            58999999999       9999999999999999999999999998

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=1e-08  Score=74.85  Aligned_cols=41  Identities=17%  Similarity=0.232  Sum_probs=30.2

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      |+++|+++++|+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            56677777777777777777777777777777 677777774

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=8.8e-09  Score=75.98  Aligned_cols=39  Identities=23%  Similarity=0.393  Sum_probs=19.0

Q ss_pred             hhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          140 SRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       140 r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      ++|.++++|+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS   44 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            344444455555555555555555555444 444455544

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=4.6e-09  Score=77.45  Aligned_cols=42  Identities=19%  Similarity=0.314  Sum_probs=31.7

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +|+++|++++||+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            467777777777777777777777777777777 677777775

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=8e-09  Score=76.22  Aligned_cols=41  Identities=22%  Similarity=0.377  Sum_probs=28.3

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc-cC-CceeecC
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CG-TREYRCD  178 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hg-eKpy~C~  178 (643)
                      |+++|++++||+|++|++.|..+..|..|+++ ++ +++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            56667777777777777777777777777766 55 6677663

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=2.6e-08  Score=73.32  Aligned_cols=44  Identities=25%  Similarity=0.393  Sum_probs=40.6

Q ss_pred             CccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           62 SPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        62 h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      +.++|.++++|+|++|++.|..+..|+.|+++|+             ++++|.|++|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTS-------------SSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            4678899999999999999999999999999995             8899999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=1.9e-08  Score=74.19  Aligned_cols=39  Identities=21%  Similarity=0.163  Sum_probs=37.5

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            8 SGEKPYKCVEC-------GKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CSCCSEECSSS-------CCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCeECccc-------CchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            58999999998       9999999999999999999999999998

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.58  E-value=2.2e-08  Score=74.72  Aligned_cols=42  Identities=21%  Similarity=0.305  Sum_probs=32.9

Q ss_pred             cccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccc
Q 006487          107 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSK  155 (643)
Q Consensus       107 ~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgK  155 (643)
                      +..+++|.|++|       ++.|.....|.+|+++|++++||+|++|+|
T Consensus         7 ~~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTT-------TEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCC-------CcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            346777888877       788888888888888888888888888875

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.58  E-value=1.6e-08  Score=75.48  Aligned_cols=41  Identities=20%  Similarity=0.372  Sum_probs=38.3

Q ss_pred             hccCCcccccccccccccchhhhhhcccc-cCCceeecC-CCC
Q 006487          141 RKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGT  181 (643)
Q Consensus       141 ~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK  181 (643)
                      .|..+++|+|++|++.|.....|.+|+++ +++++|.|+ |+|
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            46778999999999999999999999999 789999999 986

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.58  E-value=1.2e-08  Score=74.82  Aligned_cols=41  Identities=15%  Similarity=0.161  Sum_probs=22.6

Q ss_pred             cccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCccccccccc
Q 006487          107 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCS  154 (643)
Q Consensus       107 ~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~Cg  154 (643)
                      |.++++|.|++|       ++.|.....|.+|+++|+++++|.|++|+
T Consensus         5 h~~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            5 SSGEKPYSCPVC-------GLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CSSCCSSEETTT-------TEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             cCCCCCCcCCCC-------CcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            445555555555       55555555555555555555555555553

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=3.2e-09  Score=88.06  Aligned_cols=64  Identities=23%  Similarity=0.464  Sum_probs=55.3

Q ss_pred             hhHHhHhhhccCCcccccccccccccchhhhhhcccccCCceeecC-CCCCcCChHHHHHHHHHhhh
Q 006487          133 TGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITHRAFCDA  198 (643)
Q Consensus       133 s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rthgeKpy~C~-CgK~F~~ks~L~~H~~~Hh~  198 (643)
                      ..|..|+++|..++||.|+.|++.|. ...|..|+..+++++|.|+ |++.|. +..|..|+++|..
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~   67 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHEDYCGARTELCGNCGRNVL-VKDLKTHPEVCGR   67 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHHHHHHHCEEECSSSCCEEE-TTGGGTHHHHBTT
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHHhHcCCCceEcccCCCcCc-HHHHHHHHHHccC
Confidence            45788999999999999999999994 8899999933899999999 999887 4899999998854

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=1.2e-08  Score=74.71  Aligned_cols=41  Identities=27%  Similarity=0.455  Sum_probs=32.2

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeec
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  177 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C  177 (643)
                      .|+++|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            467778888888888888888888888888877 67777776

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=3.6e-08  Score=72.56  Aligned_cols=44  Identities=23%  Similarity=0.270  Sum_probs=40.6

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTT-------------TSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhC-------------CCCCCCCCC
Confidence            57889999999999999999999999999999995             789999975

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=2.8e-08  Score=73.27  Aligned_cols=39  Identities=21%  Similarity=0.226  Sum_probs=37.1

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            8 SGEKPFKCKEC-------GKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSS-------CCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCEECCcC-------CchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            58999999998       9999999999999999999999999986

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=3.4e-08  Score=72.76  Aligned_cols=44  Identities=25%  Similarity=0.369  Sum_probs=40.7

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTS-------------CCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            47889999999999999999999999999999995             789999975

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=3.9e-08  Score=72.58  Aligned_cols=44  Identities=20%  Similarity=0.312  Sum_probs=40.2

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|+++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS-------------GERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTT-------------SCCSCTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            36788999999999999999999999999999995             789999975

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=4.2e-08  Score=72.18  Aligned_cols=44  Identities=23%  Similarity=0.280  Sum_probs=40.6

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTS-------------CSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcC-------------CCCCCCCCC
Confidence            57889999999999999999999999999999995             789999975

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=4.6e-08  Score=72.06  Aligned_cols=44  Identities=30%  Similarity=0.432  Sum_probs=40.7

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|+++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTS-------------SSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            57889999999999999999999999999999995             889999975

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=4.5e-08  Score=72.00  Aligned_cols=44  Identities=23%  Similarity=0.321  Sum_probs=40.6

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGC-------------CCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            57889999999999999999999999999999995             789999975

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=4.4e-08  Score=72.05  Aligned_cols=44  Identities=27%  Similarity=0.396  Sum_probs=40.6

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHT-------------GERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTS-------------CCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            47889999999999999999999999999999995             789999975

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=4e-08  Score=72.14  Aligned_cols=44  Identities=27%  Similarity=0.391  Sum_probs=40.7

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSC-------------SSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            57889999999999999999999999999999995             789999975

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=3.6e-08  Score=72.65  Aligned_cols=44  Identities=25%  Similarity=0.344  Sum_probs=40.7

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHS-------------SSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            47889999999999999999999999999999995             889999975

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=4.6e-08  Score=71.85  Aligned_cols=44  Identities=20%  Similarity=0.325  Sum_probs=40.7

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|+++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHT-------------GENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGS-------------SSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            57889999999999999999999999999999995             789999975

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=4.5e-08  Score=71.90  Aligned_cols=44  Identities=27%  Similarity=0.391  Sum_probs=40.6

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTS-------------SCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcC-------------CCCCcCCCC
Confidence            57889999999999999999999999999999995             789999975

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=6.1e-08  Score=71.37  Aligned_cols=43  Identities=26%  Similarity=0.404  Sum_probs=39.6

Q ss_pred             CccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           62 SPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        62 h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      |.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSC-------------CSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            6788999999999999999999999999999995             789999975

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=4.6e-08  Score=72.03  Aligned_cols=44  Identities=20%  Similarity=0.289  Sum_probs=40.4

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT-------------GERSSGPSS   45 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCS-------------SCCSCSTTC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            47888999999999999999999999999999995             789999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.53  E-value=3.7e-08  Score=72.57  Aligned_cols=44  Identities=25%  Similarity=0.299  Sum_probs=40.6

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|+++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHT-------------TSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            47889999999999999999999999999999995             789999975

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=3.8e-08  Score=72.30  Aligned_cols=44  Identities=20%  Similarity=0.343  Sum_probs=40.7

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHS-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHC-------------CCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            57889999999999999999999999999999995             789999975

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=5.7e-08  Score=71.54  Aligned_cols=44  Identities=27%  Similarity=0.366  Sum_probs=40.5

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGT-------------TCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            57889999999999999999999999999999995             789999975

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=4.1e-08  Score=72.21  Aligned_cols=44  Identities=23%  Similarity=0.383  Sum_probs=40.7

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHC-------------CCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            57889999999999999999999999999999995             789999975

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=5e-08  Score=71.65  Aligned_cols=44  Identities=25%  Similarity=0.335  Sum_probs=40.6

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTS-------------SCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            57889999999999999999999999999999995             789999975

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=5.3e-08  Score=71.62  Aligned_cols=44  Identities=23%  Similarity=0.347  Sum_probs=40.5

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|+++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHR-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGC-------------SCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhC-------------CCCCCCCCC
Confidence            47889999999999999999999999999999995             789999975

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=5.4e-08  Score=71.57  Aligned_cols=44  Identities=23%  Similarity=0.296  Sum_probs=40.5

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTC-------------CSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            57889999999999999999999999999999995             789999975

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=2.4e-08  Score=73.71  Aligned_cols=40  Identities=25%  Similarity=0.494  Sum_probs=23.1

Q ss_pred             hhhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          139 YSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       139 ~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      +++|+++++|+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            3445555566666666666666666666555 455566553

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.50  E-value=5.7e-08  Score=69.90  Aligned_cols=42  Identities=24%  Similarity=0.389  Sum_probs=38.5

Q ss_pred             CccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCC
Q 006487           62 SPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCP  116 (643)
Q Consensus        62 h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  116 (643)
                      |+++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHA-------------GESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGC-------------CCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcC-------------CCCCCCCC
Confidence            5678999999999999999999999999999995             78899884

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=6.1e-08  Score=71.36  Aligned_cols=44  Identities=25%  Similarity=0.304  Sum_probs=40.2

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCcccccccccccc-CceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVK-RKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~-~k~y~C~~  117 (643)
                      .|+++|.++++|+|++|++.|.....|..|+++|+             + +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT-------------RGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCC-------------SCCTTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999995             7 88999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.50  E-value=5.4e-08  Score=71.65  Aligned_cols=44  Identities=25%  Similarity=0.347  Sum_probs=40.5

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHT-------------SSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            47888999999999999999999999999999995             789999975

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=2.8e-08  Score=73.62  Aligned_cols=28  Identities=11%  Similarity=0.065  Sum_probs=14.4

Q ss_pred             CCcccChhhHHhHhhhccCCcccccccc
Q 006487          126 SRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       126 ~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      ++.|.....|.+|+++|++++||+|.+|
T Consensus        21 ~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A           21 GWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4555555555555555555555555444

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=6.2e-08  Score=70.33  Aligned_cols=43  Identities=21%  Similarity=0.371  Sum_probs=39.6

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCP  116 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  116 (643)
                      .|+++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHT-------------GESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTC-------------CSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcC-------------CCCCCCCC
Confidence            57889999999999999999999999999999995             78899885

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.48  E-value=2.5e-08  Score=73.16  Aligned_cols=39  Identities=21%  Similarity=0.501  Sum_probs=22.5

Q ss_pred             hhhccCCcccccccccccccchhhhhhcccc-cCCceeec
Q 006487          139 YSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  177 (643)
Q Consensus       139 ~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C  177 (643)
                      .++|+++++|+|++|+|.|..+..|..|+++ +++++|.|
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS   43 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCS
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCC
Confidence            3445555566666666666666666666555 45555555

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.47  E-value=8e-08  Score=69.00  Aligned_cols=42  Identities=14%  Similarity=0.287  Sum_probs=38.2

Q ss_pred             CccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCC
Q 006487           62 SPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCP  116 (643)
Q Consensus        62 h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  116 (643)
                      |.++|.++++|+|++|++.|..+..|..|+++|.             ++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHT-------------VKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTS-------------CCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCC
Confidence            5678999999999999999999999999999995             78899884

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.47  E-value=6.5e-08  Score=70.32  Aligned_cols=43  Identities=23%  Similarity=0.318  Sum_probs=39.5

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCP  116 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  116 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS-------------GQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSS-------------SSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcC-------------CCCCCCCC
Confidence            47889999999999999999999999999999995             78899885

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.47  E-value=6.7e-08  Score=70.93  Aligned_cols=44  Identities=20%  Similarity=0.280  Sum_probs=40.5

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|.++|.++++|+|++|++.|.....|..|+++|.             ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHT-------------GKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSC-------------CCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            57889999999999999999999999999999995             789999974

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.47  E-value=5.8e-08  Score=71.15  Aligned_cols=41  Identities=24%  Similarity=0.458  Sum_probs=38.7

Q ss_pred             hhccCCcccccccccccccchhhhhhcccc-cCCceeecC-CC
Q 006487          140 SRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CG  180 (643)
Q Consensus       140 r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-Cg  180 (643)
                      ..|++++||+|++|++.|..+..|..|+++ +++++|.|+ |+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            468899999999999999999999999999 899999999 96

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.46  E-value=7.1e-08  Score=70.00  Aligned_cols=43  Identities=23%  Similarity=0.379  Sum_probs=39.6

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCP  116 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  116 (643)
                      .|.++|.++++|+|++|++.|.....|..|+++|+             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHT-------------GESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTT-------------TSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhC-------------CCCCCCCC
Confidence            57889999999999999999999999999999995             78899885

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.46  E-value=5.7e-08  Score=71.55  Aligned_cols=44  Identities=23%  Similarity=0.338  Sum_probs=40.4

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHT-------------QETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHS-------------SCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            57889999999999999999999999999999995             789999974

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=4.9e-08  Score=70.00  Aligned_cols=37  Identities=16%  Similarity=0.512  Sum_probs=22.5

Q ss_pred             hccCCcccccccccccccchhhhhhcccc-cCCceeec
Q 006487          141 RKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  177 (643)
Q Consensus       141 ~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C  177 (643)
                      +|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            45556666666666666666666666665 55566655

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.46  E-value=8.4e-08  Score=68.90  Aligned_cols=42  Identities=21%  Similarity=0.313  Sum_probs=38.4

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLC  115 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  115 (643)
                      .|+++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHT-------------GSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTS-------------CCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhC-------------CCCCCCC
Confidence            37788999999999999999999999999999995             7888887

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=9.5e-08  Score=69.53  Aligned_cols=43  Identities=23%  Similarity=0.363  Sum_probs=39.4

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCP  116 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  116 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA-------------RKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCC-------------CCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcC-------------CCCCCCCC
Confidence            47889999999999999999999999999999995             78889884

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.45  E-value=6.7e-08  Score=71.16  Aligned_cols=40  Identities=18%  Similarity=0.228  Sum_probs=38.0

Q ss_pred             cccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          107 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       107 ~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      |.++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         7 h~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            7 GEGEKPYQCSEC-------GKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCCTTCCSSS-------CCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCeeCCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            468999999998       9999999999999999999999999998

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.44  E-value=7.8e-08  Score=70.57  Aligned_cols=38  Identities=24%  Similarity=0.265  Sum_probs=35.9

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEK  152 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~  152 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|++
T Consensus         8 ~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            8 TGEKPYNCEEC-------GKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCSEECTTT-------CCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCccCCCC-------CCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            48899999999       999999999999999999999999975

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.44  E-value=6.6e-08  Score=71.20  Aligned_cols=44  Identities=30%  Similarity=0.385  Sum_probs=40.5

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .|+++|.++++|+|++|++.|.....|..|+++|+             ++++|.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS-------------REKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHH-------------HTTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            57889999999999999999999999999999995             789999975

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=6.3e-08  Score=70.43  Aligned_cols=38  Identities=16%  Similarity=0.326  Sum_probs=20.4

Q ss_pred             cccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccc
Q 006487          107 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE  151 (643)
Q Consensus       107 ~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~  151 (643)
                      |.++++|.|++|       ++.|.....|.+|+++|++++||+|+
T Consensus         5 h~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            5 SSGNGAFFCNEC-------DCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             CSSSCCBCCSSS-------CCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCCCCCEECCCC-------CCeeCChHHHHHHHHhhCCCCCccCC
Confidence            444555555555       55555555555555555555555554

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1e-07  Score=68.59  Aligned_cols=41  Identities=24%  Similarity=0.348  Sum_probs=37.6

Q ss_pred             CccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeC
Q 006487           62 SPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLC  115 (643)
Q Consensus        62 h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  115 (643)
                      |.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHT-------------GSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTS-------------CCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcC-------------CCCCCCC
Confidence            6788999999999999999999999999999995             7788877

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.42  E-value=1.1e-07  Score=69.69  Aligned_cols=43  Identities=28%  Similarity=0.381  Sum_probs=38.8

Q ss_pred             CccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           62 SPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        62 h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      +.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHT-------------GEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTS-------------SCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhC-------------CCCCCCCCC
Confidence            4567889999999999999999999999999995             789999974

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=8e-08  Score=70.63  Aligned_cols=43  Identities=21%  Similarity=0.264  Sum_probs=39.7

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCP  116 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  116 (643)
                      .|.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHE-------------RTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHH-------------HSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhC-------------CCCCCCCC
Confidence            57889999999999999999999999999999995             78899986

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.41  E-value=1.2e-07  Score=68.14  Aligned_cols=41  Identities=20%  Similarity=0.400  Sum_probs=37.8

Q ss_pred             CccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeC
Q 006487           62 SPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLC  115 (643)
Q Consensus        62 h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  115 (643)
                      |.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS-------------QSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTT-------------CCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcC-------------CCCCCCC
Confidence            6788999999999999999999999999999995             7888887

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=1.1e-07  Score=70.07  Aligned_cols=38  Identities=21%  Similarity=0.371  Sum_probs=35.7

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEK  152 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~  152 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|+.
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            8 TGEKPYKCSDC-------GKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CSCCCEECSSS-------CCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             CCCCCEECccc-------CCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            58999999998       999999999999999999999999973

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.5e-07  Score=69.60  Aligned_cols=44  Identities=27%  Similarity=0.348  Sum_probs=40.5

Q ss_pred             CccccCCCCccccC--cccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCC
Q 006487           62 SPKTLMATNRFICE--VCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEP  118 (643)
Q Consensus        62 h~k~h~~~kpy~C~--~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  118 (643)
                      |.++|.++++|+|.  +|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS-------------GVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSC-------------CCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            56788999999998  89999999999999999995             8899999987

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=1.4e-07  Score=69.49  Aligned_cols=43  Identities=26%  Similarity=0.243  Sum_probs=38.9

Q ss_pred             CccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCC
Q 006487           62 SPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        62 h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      +.++|.++++|+|++|++.|..+..|..|+++|+             ++++|.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHS-------------SCCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhC-------------CCCCCCCCC
Confidence            4567889999999999999999999999999995             789999975

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.39  E-value=9.6e-08  Score=73.09  Aligned_cols=52  Identities=13%  Similarity=0.153  Sum_probs=47.6

Q ss_pred             cccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccc
Q 006487           78 NKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWK  149 (643)
Q Consensus        78 gK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfk  149 (643)
                      +|.|.....|..|+++|.             ++++|.|++|       ++.|.....|.+|+++|++++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~-------------~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQ-------------SEQPATCPIC-------YAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHT-------------SSCCEECTTT-------CCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcC-------------CCCCccCCCC-------CcccCCHHHHHHHHHHhccCCCCC
Confidence            467888899999999995             8899999999       999999999999999999999984

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=1.3e-07  Score=68.80  Aligned_cols=37  Identities=14%  Similarity=0.141  Sum_probs=35.1

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE  151 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~  151 (643)
                      .++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            8 HTRKRYECSKC-------QATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSSEECTTT-------CCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CCCCCeECCCC-------CCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            48899999998       99999999999999999999999995

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.37  E-value=4e-08  Score=84.11  Aligned_cols=51  Identities=12%  Similarity=0.215  Sum_probs=30.0

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|..|.    ....|..|.++
T Consensus        21 ~~~kpy~C~~C-------~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~   71 (88)
T 1x6f_A           21 LQNSTYQCKHC-------DSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKY   71 (88)
T ss_dssp             CCCSCEECSSS-------CCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCC
T ss_pred             CCCCCCcCCCC-------CCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhcc
Confidence            35566666665       66666666666666666666666665543    23444455554

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=1.3e-07  Score=68.85  Aligned_cols=43  Identities=21%  Similarity=0.330  Sum_probs=39.3

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeCC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCP  116 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  116 (643)
                      .|.++|.++++|+|++|++.|.....|..|+++|+             ++++|.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT-------------RKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHC-------------CCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhC-------------CCCCCCCC
Confidence            57889999999999999999999999999999995             78889883

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=7.9e-08  Score=79.56  Aligned_cols=63  Identities=19%  Similarity=0.386  Sum_probs=54.7

Q ss_pred             hhHHhHhhhcCCCccccccccccccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhh
Q 006487           85 QNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWK  164 (643)
Q Consensus        85 ~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~  164 (643)
                      ..|..|++.|             ..+++|.|+.|       ++.|. ...|..|+ .|.+++||.|+.|++.|. ...|.
T Consensus         3 ~~L~~H~~~~-------------c~~r~~~C~~C-------~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~   59 (75)
T 2d9k_A            3 SGSSGHEETE-------------CPLRLAVCQHC-------DLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLK   59 (75)
T ss_dssp             CCCSCCCCCC-------------CCCCCEECSSS-------CCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGG
T ss_pred             hHHHhhCccc-------------CCCcccCCccc-------ChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHH
Confidence            4566777666             48999999998       89994 89999999 999999999999999987 59999


Q ss_pred             hccccc
Q 006487          165 AHSKTC  170 (643)
Q Consensus       165 ~H~rth  170 (643)
                      .|++++
T Consensus        60 ~H~~~c   65 (75)
T 2d9k_A           60 THPEVC   65 (75)
T ss_dssp             THHHHB
T ss_pred             HHHHHc
Confidence            999883

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=2.4e-07  Score=67.57  Aligned_cols=42  Identities=21%  Similarity=0.265  Sum_probs=38.5

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcCCCccccccccccccCceeeC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLC  115 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  115 (643)
                      .|.++|.++++|+|++|++.|.....|..|+++|+             ++++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHA-------------GVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGS-------------SCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhc-------------CCCCCCC
Confidence            47889999999999999999999999999999995             7788876

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=1.8e-07  Score=67.25  Aligned_cols=36  Identities=14%  Similarity=0.154  Sum_probs=34.5

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKC  150 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC  150 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|
T Consensus         7 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            7 GGEKPYKCETC-------GARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CSSCSEECTTT-------CCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCCCCEeCCCc-------ChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            58999999999       9999999999999999999999998

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=2.5e-07  Score=67.36  Aligned_cols=37  Identities=14%  Similarity=0.153  Sum_probs=35.1

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCE  151 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~  151 (643)
                      .++++|.|++|       ++.|.....|.+|+++|++++||+|+
T Consensus         8 ~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            8 AAKTTSECQEC-------GKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SSSCCCCCTTT-------CCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCcCeECCCC-------CcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            58899999999       99999999999999999999999995

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=4e-07  Score=66.08  Aligned_cols=39  Identities=18%  Similarity=0.407  Sum_probs=36.6

Q ss_pred             hhccCCcccccccccccccchhhhhhcccc-cCCceeecC
Q 006487          140 SRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD  178 (643)
Q Consensus       140 r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~  178 (643)
                      ++|++++||+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            578899999999999999999999999999 899999995

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.21  E-value=2.5e-07  Score=79.16  Aligned_cols=58  Identities=10%  Similarity=0.327  Sum_probs=48.7

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCChHHHHHHHHHhhh
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDA  198 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L~~H~~~Hh~  198 (643)
                      .|.++|++++||+|++|++.|.....|..|+++ ++++||+|. |.+    +..|..|.++|..
T Consensus        15 ~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~~~~   74 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKYADG   74 (88)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCCCCC
T ss_pred             ccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh----HHHHHhhhccccc
Confidence            346679999999999999999999999999999 789999997 754    4456677777654

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.20  E-value=7.9e-07  Score=63.51  Aligned_cols=37  Identities=16%  Similarity=0.249  Sum_probs=35.0

Q ss_pred             cccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCccccc
Q 006487          107 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKC  150 (643)
Q Consensus       107 ~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC  150 (643)
                      |.++++|.|++|       ++.|.....|.+|+++|++++||+|
T Consensus         5 h~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQEC-------GKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSS-------CCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             cCCCCCeECCCC-------CCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            468899999998       9999999999999999999999998

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.14  E-value=4.9e-07  Score=64.02  Aligned_cols=36  Identities=11%  Similarity=0.180  Sum_probs=21.4

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKC  150 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC  150 (643)
                      .++++|.|++|       ++.|.....|..|+++|++++||.|
T Consensus         2 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFC-------KREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CCSSSEECTTT-------CCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCceECCCC-------CcccCCHHHHHHHHHHcCCCcccee
Confidence            34556666665       5666666666666666666666554

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.13  E-value=7.8e-07  Score=61.87  Aligned_cols=32  Identities=19%  Similarity=0.479  Sum_probs=19.0

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      |+++|++++||+|++|++.|..+..|..|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHH
Confidence            45556666666666666666666666555555

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.06  E-value=8.1e-07  Score=61.78  Aligned_cols=29  Identities=24%  Similarity=0.489  Sum_probs=14.2

Q ss_pred             hccCCcccccccccccccchhhhhhcccc
Q 006487          141 RKHGEKKWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       141 ~H~geKpfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      +|++++||+|++|++.|..+..|..|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKT   31 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHH
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHH
Confidence            34444555555555555544444444444

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.98  E-value=2.1e-06  Score=70.32  Aligned_cols=40  Identities=15%  Similarity=0.184  Sum_probs=21.0

Q ss_pred             cccCceeeCCCCCccCCCCCCcccChhhHHhHh-hhccCCcccccc
Q 006487          107 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHY-SRKHGEKKWKCE  151 (643)
Q Consensus       107 ~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~-r~H~geKpfkC~  151 (643)
                      ..++|||+|++.+|     +++|.....|.+|+ ++|+++|||.|.
T Consensus        22 ~sGEKPYkC~~~~C-----gKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           22 YSPYRPYRCVHQGC-----FAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             SCSSCSCBCCSTTC-----CCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             ccCCCCeECCCCCc-----ChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            34555555544111     55555555555554 355555555554

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=97.97  E-value=4e-06  Score=58.17  Aligned_cols=34  Identities=32%  Similarity=0.679  Sum_probs=32.1

Q ss_pred             CccccCCCCccccCcccccccCchhHHhHhhhcC
Q 006487           62 SPKTLMATNRFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        62 h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      |.++|.++++|+|++|++.|.....|..|+++|.
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            6788999999999999999999999999999985

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.96  E-value=2e-06  Score=58.76  Aligned_cols=17  Identities=18%  Similarity=0.137  Sum_probs=6.3

Q ss_pred             CCCCcCChHHHHHHHHH
Q 006487          179 CGTLFSRRDSFITHRAF  195 (643)
Q Consensus       179 CgK~F~~ks~L~~H~~~  195 (643)
                      |++.|.++..|.+|+++
T Consensus        13 C~k~f~~~~~L~~H~~~   29 (35)
T 2elx_A           13 CLKKFVSSIRLRSHIRE   29 (35)
T ss_dssp             SCCEESSHHHHHHHHHH
T ss_pred             CcchhCCHHHHHHHHHH
Confidence            33333333333333333

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=97.95  E-value=2.6e-06  Score=58.41  Aligned_cols=27  Identities=19%  Similarity=0.567  Sum_probs=11.8

Q ss_pred             cCCcccccccccccccchhhhhhcccc
Q 006487          143 HGEKKWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       143 ~geKpfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      ++++||+|++|++.|..+..|..|+++
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~l~~H~~~   29 (35)
T 1srk_A            3 SGKRPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHHH
Confidence            344444444444444444444444444

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=97.94  E-value=4.8e-06  Score=58.75  Aligned_cols=36  Identities=11%  Similarity=0.271  Sum_probs=32.9

Q ss_pred             ccCCcccccccccccccchhhhhhcccc-cCCceeec
Q 006487          142 KHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  177 (643)
Q Consensus       142 H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C  177 (643)
                      |++++||+|++|++.|.....|..|+++ +++++|.|
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            5679999999999999999999999999 78999876

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=97.84  E-value=4.9e-06  Score=56.82  Aligned_cols=24  Identities=8%  Similarity=0.005  Sum_probs=13.2

Q ss_pred             CCcccChhhHHhHhhhccCCcccc
Q 006487          126 SRALGDLTGIKKHYSRKHGEKKWK  149 (643)
Q Consensus       126 ~k~F~~~s~L~~H~r~H~geKpfk  149 (643)
                      ++.|.....|..|+++|++++||.
T Consensus         9 ~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            9 PKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CchhCCHHHHHHHHHHhCCCCCCC
Confidence            555555555555555555555543

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.83  E-value=6.5e-06  Score=57.07  Aligned_cols=32  Identities=19%  Similarity=0.503  Sum_probs=30.0

Q ss_pred             cccCCCCccccCcccccccCchhHHhHhhhcC
Q 006487           64 KTLMATNRFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        64 k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      ++|.++++|+|++|++.|..+..|..|+++|+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~   33 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNH   33 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHc
Confidence            56888999999999999999999999999996

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.78  E-value=5.1e-06  Score=58.10  Aligned_cols=26  Identities=15%  Similarity=0.257  Sum_probs=11.5

Q ss_pred             CCceeecC-CCCCcCChHHHHHH-HHHh
Q 006487          171 GTREYRCD-CGTLFSRRDSFITH-RAFC  196 (643)
Q Consensus       171 geKpy~C~-CgK~F~~ks~L~~H-~~~H  196 (643)
                      +++||.|+ |++.|..+..|.+| +++|
T Consensus         6 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H   33 (37)
T 2elm_A            6 SGHLYYCSQCHYSSITKNCLKRHVIQKH   33 (37)
T ss_dssp             SSCEEECSSSSCEEECHHHHHHHHHHHT
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHHHc
Confidence            34444444 44444444444444 4433

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.77  E-value=4.2e-06  Score=59.61  Aligned_cols=24  Identities=21%  Similarity=0.508  Sum_probs=12.2

Q ss_pred             CCcccccccccccccchhhhhhcc
Q 006487          144 GEKKWKCEKCSKRYAVQSDWKAHS  167 (643)
Q Consensus       144 geKpfkC~~CgKsF~~ks~L~~H~  167 (643)
                      +||||+|++|+|+|..++.|.+|+
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CccCeECCCCCCccCCHhHccCcC
Confidence            445555555555555555555554

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.77  E-value=1.6e-05  Score=65.19  Aligned_cols=38  Identities=13%  Similarity=0.246  Sum_probs=33.6

Q ss_pred             hccCCccccccc--ccccccchhhhhhcc-cc-cCCceeecC
Q 006487          141 RKHGEKKWKCEK--CSKRYAVQSDWKAHS-KT-CGTREYRCD  178 (643)
Q Consensus       141 ~H~geKpfkC~~--CgKsF~~ks~L~~H~-rt-hgeKpy~C~  178 (643)
                      .++++|||+|.+  |+|+|..++.|.+|+ ++ +++|||.|.
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            357899999976  999999999999998 56 789999993

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.74  E-value=6.3e-06  Score=57.22  Aligned_cols=25  Identities=20%  Similarity=0.430  Sum_probs=10.6

Q ss_pred             CceeecC-CCCCcCCh-HHHHHHHHHh
Q 006487          172 TREYRCD-CGTLFSRR-DSFITHRAFC  196 (643)
Q Consensus       172 eKpy~C~-CgK~F~~k-s~L~~H~~~H  196 (643)
                      +++|.|+ |++.|.++ ..|.+|+++|
T Consensus         7 ~k~~~C~~C~k~f~~~~~~L~~H~~~H   33 (37)
T 2elp_A            7 GRAMKCPYCDFYFMKNGSDLQRHIWAH   33 (37)
T ss_dssp             CCCEECSSSSCEECSSCHHHHHHHHHH
T ss_pred             CCCeECCCCChhhccCHHHHHHHHHhc
Confidence            3444444 44444444 4444444443

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=97.74  E-value=1.5e-05  Score=54.32  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=29.7

Q ss_pred             cccccccccccccchhhhhhcccc-cCCceeec
Q 006487          146 KKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRC  177 (643)
Q Consensus       146 KpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C  177 (643)
                      |||+|++|++.|.....|..|+++ +++++|.+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEERR   33 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999999999999999 89999864

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.74  E-value=8.4e-06  Score=56.20  Aligned_cols=27  Identities=15%  Similarity=0.425  Sum_probs=11.5

Q ss_pred             cCCcccccccccccccchhhhhhcccc
Q 006487          143 HGEKKWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       143 ~geKpfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      ++++||+|++|++.|..+..|..|+++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            5 SSGLLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHH
Confidence            334444444444444444444444443

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.70  E-value=9.5e-06  Score=55.73  Aligned_cols=24  Identities=17%  Similarity=0.408  Sum_probs=10.0

Q ss_pred             ceeecC-CCCCcCChHHHHHHHHHh
Q 006487          173 REYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       173 Kpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      ++|.|+ |++.|..+..|.+|+++|
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLRKH   32 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHc
Confidence            344444 444444444444444433

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.70  E-value=9.2e-06  Score=56.00  Aligned_cols=24  Identities=13%  Similarity=0.433  Sum_probs=9.4

Q ss_pred             ceeecC-CCCCcCChHHHHHHHHHh
Q 006487          173 REYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       173 Kpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      ++|.|+ |++.|..+..|.+|+++|
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMNRH   32 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHHHS
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHh
Confidence            333333 333333333444443333

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.70  E-value=7.7e-06  Score=55.30  Aligned_cols=30  Identities=23%  Similarity=0.396  Sum_probs=19.6

Q ss_pred             cccccccccccccchhhhhhcccc-cCCcee
Q 006487          146 KKWKCEKCSKRYAVQSDWKAHSKT-CGTREY  175 (643)
Q Consensus       146 KpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy  175 (643)
                      |||+|++|++.|..+..|..|+++ ++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            466666677777666666666666 555654

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.67  E-value=8.5e-06  Score=56.90  Aligned_cols=23  Identities=9%  Similarity=0.138  Sum_probs=12.8

Q ss_pred             CCcccChhhHHhHhhhccCCccc
Q 006487          126 SRALGDLTGIKKHYSRKHGEKKW  148 (643)
Q Consensus       126 ~k~F~~~s~L~~H~r~H~geKpf  148 (643)
                      ++.|.....|.+|+++|++++||
T Consensus        15 ~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A           15 GQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CcccCCHHHHHHHHHHhCCCCCC
Confidence            55555555555555555555554

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.67  E-value=1.4e-05  Score=54.86  Aligned_cols=18  Identities=22%  Similarity=0.683  Sum_probs=7.0

Q ss_pred             CCCCcCChHHHHHHHHHh
Q 006487          179 CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       179 CgK~F~~ks~L~~H~~~H  196 (643)
                      |++.|.++..|.+|+++|
T Consensus        15 C~k~f~~~~~l~~H~~~H   32 (36)
T 2elr_A           15 CGKKFKSKGTLKSHKLLH   32 (36)
T ss_dssp             TCCBCSSHHHHHHHHHHH
T ss_pred             CCCCcCchHHHHHHHHHh
Confidence            333333333333333333

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.64  E-value=1.7e-05  Score=55.28  Aligned_cols=32  Identities=16%  Similarity=0.312  Sum_probs=29.6

Q ss_pred             cccCCCCccccCcccccccCchhHHhH-hhhcC
Q 006487           64 KTLMATNRFICEVCNKGFQREQNLQLH-RRGHN   95 (643)
Q Consensus        64 k~h~~~kpy~C~~CgK~F~~~~~L~~H-~r~H~   95 (643)
                      ++|.+++||+|++|++.|..+..|..| ++.|+
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            568889999999999999999999999 88885

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.63  E-value=1.3e-05  Score=59.76  Aligned_cols=24  Identities=33%  Similarity=0.769  Sum_probs=11.4

Q ss_pred             CCceeecC-CCCCcCChHHHHHHHH
Q 006487          171 GTREYRCD-CGTLFSRRDSFITHRA  194 (643)
Q Consensus       171 geKpy~C~-CgK~F~~ks~L~~H~~  194 (643)
                      ++|+|.|+ |+|.|.++..|.+|++
T Consensus         4 ~~kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            4 RDKPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             TTSCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCcCEECCCcCcccCCHHHHHHHhh
Confidence            34444444 4444444444444444

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.63  E-value=2.2e-05  Score=63.54  Aligned_cols=28  Identities=21%  Similarity=0.490  Sum_probs=17.7

Q ss_pred             CCceeecC-CCCCcCChHHHHHHHHHhhh
Q 006487          171 GTREYRCD-CGTLFSRRDSFITHRAFCDA  198 (643)
Q Consensus       171 geKpy~C~-CgK~F~~ks~L~~H~~~Hh~  198 (643)
                      ++|||+|. |+|.|.++..|++|+++|..
T Consensus        10 ~ekpy~C~~CgK~F~~~s~L~~H~r~Htg   38 (66)
T 2epp_A           10 EAGILPCGLCGKVFTDANRLRQHEAQHGV   38 (66)
T ss_dssp             CCCCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             CccCcCCCCCCCccCCHHHHHhhhhhhCC
Confidence            45666666 66666666666666666654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.62  E-value=1.5e-05  Score=57.28  Aligned_cols=18  Identities=11%  Similarity=0.158  Sum_probs=8.1

Q ss_pred             CCCCcCChHHHHHHHHHh
Q 006487          179 CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       179 CgK~F~~ks~L~~H~~~H  196 (643)
                      |+|.|.+++.|++|+++|
T Consensus        17 C~k~F~~~~~L~~H~r~H   34 (38)
T 2eln_A           17 CDYSTPDKYKLQAHLKVH   34 (38)
T ss_dssp             CCCEESCHHHHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHHhc
Confidence            444444444444444444

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.61  E-value=3.2e-05  Score=52.53  Aligned_cols=31  Identities=16%  Similarity=0.306  Sum_probs=16.0

Q ss_pred             cCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCc
Q 006487          109 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK  146 (643)
Q Consensus       109 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geK  146 (643)
                      ++++|.|++|       ++.|.....|.+|+++|++++
T Consensus         4 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            4 GSSGYVCALC-------LKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCeECCCC-------cchhCCHHHHHHHHHHHcCCC
Confidence            4445555554       555555555555555555444

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=97.60  E-value=3.8e-05  Score=52.33  Aligned_cols=34  Identities=9%  Similarity=0.168  Sum_probs=31.0

Q ss_pred             cccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcc
Q 006487          107 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKK  147 (643)
Q Consensus       107 ~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKp  147 (643)
                      |.++++|.|++|       ++.|.....|.+|+++|++++|
T Consensus         2 H~~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRIC-------LSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSS-------CCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCC-------CcccCCHHHHHHHHHHcCCCCC
Confidence            357899999998       9999999999999999998875

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.58  E-value=2.6e-05  Score=56.07  Aligned_cols=31  Identities=19%  Similarity=0.285  Sum_probs=28.3

Q ss_pred             ccCCCCccccCc--ccccccCchhHHhHhhhcC
Q 006487           65 TLMATNRFICEV--CNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        65 ~h~~~kpy~C~~--CgK~F~~~~~L~~H~r~H~   95 (643)
                      .+.+++||+|++  |+|.|..+..|+.|+++|+
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            357789999986  9999999999999999996

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.56  E-value=1.1e-05  Score=59.73  Aligned_cols=32  Identities=22%  Similarity=0.599  Sum_probs=16.7

Q ss_pred             HhhhccCCcccccc--cccccccchhhhhhcccc
Q 006487          138 HYSRKHGEKKWKCE--KCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       138 H~r~H~geKpfkC~--~CgKsF~~ks~L~~H~rt  169 (643)
                      |...|++++||+|+  .|+|.|..+..|..|+++
T Consensus         9 ~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~   42 (47)
T 1ncs_A            9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             GSCEEETTTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             HHhccCCCCCeECCCCCCCCccCCHHHHHHHHHH
Confidence            34445555555553  355555555555555554

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.56  E-value=3.8e-05  Score=49.26  Aligned_cols=25  Identities=12%  Similarity=0.303  Sum_probs=20.7

Q ss_pred             CceeecC-CCCCcCChHHHHHHHHHh
Q 006487          172 TREYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       172 eKpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      ++||.|+ |++.|..+..|.+|+++|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            4788888 888888888888888876

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.55  E-value=2.2e-05  Score=54.05  Aligned_cols=25  Identities=20%  Similarity=0.595  Sum_probs=11.2

Q ss_pred             CceeecC-CCCCcCChHHHHHHHHHh
Q 006487          172 TREYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       172 eKpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      +++|.|+ |++.|..+..|.+|+++|
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLRIH   32 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCEECCCCCceeCCHHHHHHHHHHh
Confidence            3444444 444444444444444444

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.54  E-value=3.1e-05  Score=53.57  Aligned_cols=32  Identities=22%  Similarity=0.389  Sum_probs=29.4

Q ss_pred             cccCCCCccccCcccccccCc-hhHHhHhhhcC
Q 006487           64 KTLMATNRFICEVCNKGFQRE-QNLQLHRRGHN   95 (643)
Q Consensus        64 k~h~~~kpy~C~~CgK~F~~~-~~L~~H~r~H~   95 (643)
                      ++|.++++|+|++|++.|..+ ..|..|+++|+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHH
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcC
Confidence            467889999999999999999 99999999985

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.54  E-value=6.5e-05  Score=60.77  Aligned_cols=41  Identities=12%  Similarity=0.228  Sum_probs=33.7

Q ss_pred             hccCCcccccccccccccchhhhhhcccccCCceeecC-CCC
Q 006487          141 RKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD-CGT  181 (643)
Q Consensus       141 ~H~geKpfkC~~CgKsF~~ks~L~~H~rthgeKpy~C~-CgK  181 (643)
                      .|.++|||+|.+|+|.|..+..|++|+++|......|. |..
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~~~~~~~~   48 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYIDL   48 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSCCCCSCCC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCccccccccC
Confidence            46789999999999999999999999999544445565 554

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.52  E-value=3.5e-05  Score=57.37  Aligned_cols=31  Identities=19%  Similarity=0.504  Sum_probs=28.5

Q ss_pred             ccCCCCccccCcccccccCchhHHhHhh-hcC
Q 006487           65 TLMATNRFICEVCNKGFQREQNLQLHRR-GHN   95 (643)
Q Consensus        65 ~h~~~kpy~C~~CgK~F~~~~~L~~H~r-~H~   95 (643)
                      +|+++++|+|.+|+|.|..+..|..|++ +|.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSC
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcC
Confidence            4778999999999999999999999999 886

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.50  E-value=3.7e-05  Score=49.31  Aligned_cols=27  Identities=22%  Similarity=0.476  Sum_probs=24.9

Q ss_pred             CCccccCcccccccCchhHHhHhhhcC
Q 006487           69 TNRFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        69 ~kpy~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      +++|+|++|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            478999999999999999999999883

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.48  E-value=3.3e-05  Score=49.83  Aligned_cols=26  Identities=31%  Similarity=0.712  Sum_probs=24.5

Q ss_pred             CCccccCcccccccCchhHHhHhhhc
Q 006487           69 TNRFICEVCNKGFQREQNLQLHRRGH   94 (643)
Q Consensus        69 ~kpy~C~~CgK~F~~~~~L~~H~r~H   94 (643)
                      ++||+|++|++.|.....|..|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            47899999999999999999999987

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.48  E-value=5.6e-05  Score=52.59  Aligned_cols=34  Identities=18%  Similarity=0.449  Sum_probs=31.1

Q ss_pred             ccCCcccccc--cccccccchhhhhhcccc-cCCcee
Q 006487          142 KHGEKKWKCE--KCSKRYAVQSDWKAHSKT-CGTREY  175 (643)
Q Consensus       142 H~geKpfkC~--~CgKsF~~ks~L~~H~rt-hgeKpy  175 (643)
                      |++++||+|+  .|++.|..+..|.+|+++ +++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            5789999999  599999999999999999 788887

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.46  E-value=3.1e-05  Score=49.91  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=18.2

Q ss_pred             CceeecC-CCCCcCChHHHHHHHHHh
Q 006487          172 TREYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       172 eKpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      ++||.|+ |++.|.++..|.+|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            4677777 777777777777777665

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.44  E-value=4.5e-05  Score=49.15  Aligned_cols=25  Identities=36%  Similarity=0.711  Sum_probs=17.2

Q ss_pred             CceeecC-CCCCcCChHHHHHHHHHh
Q 006487          172 TREYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       172 eKpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      +++|.|+ |++.|..+..|.+|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTS
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhc
Confidence            3567776 777777777777776665

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.41  E-value=8.3e-05  Score=51.04  Aligned_cols=33  Identities=12%  Similarity=0.088  Sum_probs=30.0

Q ss_pred             cccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCc
Q 006487          107 EVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK  146 (643)
Q Consensus       107 ~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geK  146 (643)
                      +.++++|.|++|       ++.|.....|.+|+++|+++|
T Consensus         4 h~~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            4 GSSGLLYDCHIC-------ERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             SCCCCCEECSSS-------CCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCeECCCC-------CCccCCHHHHHHHHHHhcCCC
Confidence            457899999998       999999999999999998764

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.40  E-value=6.9e-05  Score=48.56  Aligned_cols=26  Identities=38%  Similarity=0.732  Sum_probs=19.6

Q ss_pred             CceeecC-CCCCcCChHHHHHHHHHhh
Q 006487          172 TREYRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       172 eKpy~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      +++|.|+ |++.|.....|..|+++|.
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhc
Confidence            4677787 8888888888888877774

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.39  E-value=6.2e-05  Score=48.47  Aligned_cols=27  Identities=30%  Similarity=0.675  Sum_probs=25.0

Q ss_pred             CCccccCcccccccCchhHHhHhhhcC
Q 006487           69 TNRFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        69 ~kpy~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      +++|+|++|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999999884

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.38  E-value=2.1e-05  Score=53.05  Aligned_cols=31  Identities=13%  Similarity=0.202  Sum_probs=29.1

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCccc
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKW  148 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpf  148 (643)
                      ++|.|++|       ++.|.....|.+|+++|++++||
T Consensus         1 kp~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPAC-------PKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSS-------CTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCC-------CcccCCHHHHHHHHHHHccCCCC
Confidence            57999998       99999999999999999999987

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.37  E-value=9.7e-05  Score=50.68  Aligned_cols=30  Identities=23%  Similarity=0.315  Sum_probs=15.1

Q ss_pred             cCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487          109 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus       109 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      ++++|.|++|       ++.|.....|.+|+++|+++
T Consensus         6 ~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            6 SGKPFKCSLC-------EYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             CCCSEECSSS-------SCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCccCCCC-------CchhCCHHHHHHHHHHhccC
Confidence            4455555554       45555555555555555443

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.36  E-value=0.00011  Score=50.22  Aligned_cols=30  Identities=17%  Similarity=0.211  Sum_probs=15.4

Q ss_pred             cCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487          109 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus       109 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      .+++|.|++|       ++.|.....|.+|+++|++|
T Consensus         6 ~~~~~~C~~C-------~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            6 SGKTHLCDMC-------GKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCSSCBCTTT-------CCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCeecCcC-------CCCcCchHHHHHHHHHhcCC
Confidence            4455555554       55555555555555555443

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.35  E-value=0.0001  Score=50.40  Aligned_cols=28  Identities=25%  Similarity=0.560  Sum_probs=13.1

Q ss_pred             ccCCcccccccccccccchhhhhhcccc
Q 006487          142 KHGEKKWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       142 H~geKpfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      |.+++||+|++|++.|..+..|..|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRK   31 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHH
Confidence            3444444444444444444444444444

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.31  E-value=5.4e-05  Score=52.71  Aligned_cols=18  Identities=17%  Similarity=0.630  Sum_probs=7.0

Q ss_pred             CCCCcCChHHHHHHHHHh
Q 006487          179 CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       179 CgK~F~~ks~L~~H~~~H  196 (643)
                      |++.|.+++.|.+|+++|
T Consensus        16 C~k~f~~~~~L~~H~~~H   33 (37)
T 1va1_A           16 CGKVYGKTSHLRAHLRWH   33 (37)
T ss_dssp             CCCEESCHHHHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHHhc
Confidence            333333333333333333

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.31  E-value=7.3e-05  Score=55.17  Aligned_cols=36  Identities=17%  Similarity=0.257  Sum_probs=30.0

Q ss_pred             hhhcccc-cCCceeec--C-CCCCcCChHHHHHHHHHhhh
Q 006487          163 WKAHSKT-CGTREYRC--D-CGTLFSRRDSFITHRAFCDA  198 (643)
Q Consensus       163 L~~H~rt-hgeKpy~C--~-CgK~F~~ks~L~~H~~~Hh~  198 (643)
                      +..|..+ ++++||.|  + |++.|.+++.|++|+++|..
T Consensus         6 ~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~   45 (47)
T 1ncs_A            6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             SGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             HHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccC
Confidence            3344455 89999999  5 99999999999999999953

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.30  E-value=0.00012  Score=47.23  Aligned_cols=25  Identities=24%  Similarity=0.630  Sum_probs=19.1

Q ss_pred             ceeecC-CCCCcCChHHHHHHHHHhh
Q 006487          173 REYRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       173 Kpy~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      +||.|+ |++.|.....|.+|+++|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhc
Confidence            467787 8888888888888887774

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.39  E-value=3.7e-05  Score=48.82  Aligned_cols=24  Identities=25%  Similarity=0.688  Sum_probs=14.3

Q ss_pred             ceeecC-CCCCcCChHHHHHHHHHh
Q 006487          173 REYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       173 Kpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      |||.|+ |++.|.++..|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            355665 666666666666666554

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.27  E-value=0.00014  Score=49.79  Aligned_cols=30  Identities=13%  Similarity=0.269  Sum_probs=17.8

Q ss_pred             cCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487          109 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus       109 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      .+++|.|++|       ++.|.....|.+|+++|+++
T Consensus         6 ~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            6 SGKIFTCEYC-------NKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             CCCCEECTTT-------CCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCEECCCC-------CceeCCHHHHHHHHHHhCCC
Confidence            4556666665       56666666666666665554

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.37  E-value=4e-05  Score=48.68  Aligned_cols=25  Identities=36%  Similarity=0.761  Sum_probs=23.6

Q ss_pred             CccccCcccccccCchhHHhHhhhc
Q 006487           70 NRFICEVCNKGFQREQNLQLHRRGH   94 (643)
Q Consensus        70 kpy~C~~CgK~F~~~~~L~~H~r~H   94 (643)
                      +||+|++|++.|.....|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            5899999999999999999999987

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.26  E-value=9.2e-05  Score=47.83  Aligned_cols=25  Identities=24%  Similarity=0.574  Sum_probs=17.7

Q ss_pred             ceeecC-CCCCcCChHHHHHHHHHhh
Q 006487          173 REYRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       173 Kpy~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      |||.|+ |++.|..+..|..|+++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhc
Confidence            467777 7777777777777777663

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.26  E-value=0.00012  Score=46.90  Aligned_cols=25  Identities=20%  Similarity=0.473  Sum_probs=19.0

Q ss_pred             ceeecC-CCCCcCChHHHHHHHHHhh
Q 006487          173 REYRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       173 Kpy~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      |||.|+ |++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHI   26 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhc
Confidence            467777 8888888888888877774

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.25  E-value=0.00014  Score=46.70  Aligned_cols=25  Identities=20%  Similarity=0.550  Sum_probs=20.5

Q ss_pred             ceeecC-CCCCcCChHHHHHHHHHhh
Q 006487          173 REYRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       173 Kpy~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      ++|.|+ |++.|.....|..|+++|.
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhc
Confidence            578888 8888888888888888874

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.24  E-value=0.00013  Score=47.16  Aligned_cols=25  Identities=20%  Similarity=0.412  Sum_probs=18.4

Q ss_pred             ceeecC-CCCCcCChHHHHHHHHHhh
Q 006487          173 REYRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       173 Kpy~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      ++|.|+ |++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~   26 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHc
Confidence            467777 7777777777777777774

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.30  E-value=5.1e-05  Score=49.42  Aligned_cols=24  Identities=21%  Similarity=0.494  Sum_probs=14.5

Q ss_pred             ceeecC-CCCCcCChHHHHHHHHHh
Q 006487          173 REYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       173 Kpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      +||.|+ |++.|.....|.+|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h   26 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIH   26 (30)
Confidence            456665 666666666666666655

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.26  E-value=5.7e-05  Score=49.18  Aligned_cols=24  Identities=21%  Similarity=0.585  Sum_probs=15.4

Q ss_pred             cccccccccccccchhhhhhcccc
Q 006487          146 KKWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       146 KpfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      +||+|++|++.|.....|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRI   25 (30)
Confidence            566666666666666666666665

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.14  E-value=0.00025  Score=45.80  Aligned_cols=28  Identities=25%  Similarity=0.409  Sum_probs=16.7

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      ++|.|++|       ++.|.....|..|+++|+++
T Consensus         2 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYC-------GRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTT-------CCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCC-------CcccCCHHHHHHHHHHhccC
Confidence            45666665       56666666666666666554

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.11  E-value=0.0002  Score=47.60  Aligned_cols=18  Identities=11%  Similarity=0.183  Sum_probs=7.4

Q ss_pred             CCcccChhhHHhHhhhcc
Q 006487          126 SRALGDLTGIKKHYSRKH  143 (643)
Q Consensus       126 ~k~F~~~s~L~~H~r~H~  143 (643)
                      ++.|.....|..|+++|+
T Consensus        12 ~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A           12 DKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCCBSSSHHHHHHHGGGT
T ss_pred             CCccCCHHHHHHHHHHcc
Confidence            344444444444444443

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.17  E-value=7.7e-05  Score=48.42  Aligned_cols=23  Identities=30%  Similarity=0.642  Sum_probs=9.8

Q ss_pred             eeecC-CCCCcCChHHHHHHHHHh
Q 006487          174 EYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       174 py~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      ||.|+ |++.|.....|..|+++|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQH   25 (29)
Confidence            34444 444444444444444443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.07  E-value=0.00029  Score=45.38  Aligned_cols=27  Identities=15%  Similarity=0.290  Sum_probs=16.1

Q ss_pred             eeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487          112 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus       112 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      +|.|++|       ++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            2 KFACPEC-------PKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CEECSSS-------SCEESCSHHHHHHHTGGGSC
T ss_pred             CccCCCC-------CchhCCHHHHHHHHHHhcCC
Confidence            4556655       56666666666666666554

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.07  E-value=0.00024  Score=45.03  Aligned_cols=25  Identities=28%  Similarity=0.739  Sum_probs=23.0

Q ss_pred             ccccCcccccccCchhHHhHhhhcC
Q 006487           71 RFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        71 py~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      +|+|++|++.|.....|..|+++|+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            5899999999999999999999985

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.07  E-value=0.00018  Score=51.03  Aligned_cols=32  Identities=16%  Similarity=0.378  Sum_probs=28.7

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKC  153 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~C  153 (643)
                      .+++||.|++|       ++.|...+.|.+|+       ||+|...
T Consensus         4 ~gekp~~C~~C-------gK~F~~~s~L~~H~-------py~C~~r   35 (36)
T 1fv5_A            4 LKPARFMCLPC-------GIAFSSPSTLEAHQ-------AYYCSHR   35 (36)
T ss_dssp             SSCCCCEETTT-------TEECSCHHHHHHHH-------HHTSTTC
T ss_pred             CCccCeECCCC-------CCccCCHhHccCcC-------CeECcCC
Confidence            58999999999       99999999999998       7888653

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.03  E-value=0.00035  Score=44.87  Aligned_cols=27  Identities=26%  Similarity=0.568  Sum_probs=15.5

Q ss_pred             eeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487          112 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus       112 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      +|.|++|       ++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVC-------TRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTT-------CCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCC-------CcccCCHHHHHHHHHHhcCC
Confidence            4555555       55666666666666555544

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.02  E-value=0.00034  Score=48.51  Aligned_cols=31  Identities=23%  Similarity=0.414  Sum_probs=18.3

Q ss_pred             ccCceeeCCC--CCccCCCCCCcccChhhHHhHhhhccCC
Q 006487          108 VKRKVYLCPE--PTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus       108 ~~~k~y~C~~--C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      .++++|.|++  |       ++.|.....|.+|+++|+++
T Consensus         4 ~~~k~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            4 GKKKQHICHIQGC-------GKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSCCCEECCSTTC-------CCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCC-------CCccCCHHHHHHHHHhcCCC
Confidence            3555666653  4       66666666666666666554

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=96.99  E-value=0.00028  Score=45.81  Aligned_cols=19  Identities=16%  Similarity=0.546  Sum_probs=7.1

Q ss_pred             cccccccccccchhhhhhc
Q 006487          148 WKCEKCSKRYAVQSDWKAH  166 (643)
Q Consensus       148 fkC~~CgKsF~~ks~L~~H  166 (643)
                      |+|++|++.|.....|..|
T Consensus         3 ~~C~~C~k~f~~~~~l~~H   21 (30)
T 1paa_A            3 YACGLCNRAFTRRDLLIRH   21 (30)
T ss_dssp             SBCTTTCCBCSSSHHHHHH
T ss_pred             cCCcccCcccCChHHHHHH
Confidence            3333333333333333333

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=96.99  E-value=0.00035  Score=45.02  Aligned_cols=28  Identities=25%  Similarity=0.409  Sum_probs=15.5

Q ss_pred             eeeCCCCCccCCCCCCcccChhhHHhHhhhccCCc
Q 006487          112 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK  146 (643)
Q Consensus       112 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geK  146 (643)
                      +|.|++|       ++.|.....|..|+++|++++
T Consensus         2 ~~~C~~C-------~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            2 TYQCQYC-------EFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSS-------SCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccCCCC-------CCccCCHHHHHHHHHHHccCC
Confidence            4555555       555555555555555555543

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=96.97  E-value=0.0003  Score=46.41  Aligned_cols=19  Identities=11%  Similarity=0.310  Sum_probs=8.5

Q ss_pred             CCcccChhhHHhHhhhccC
Q 006487          126 SRALGDLTGIKKHYSRKHG  144 (643)
Q Consensus       126 ~k~F~~~s~L~~H~r~H~g  144 (643)
                      ++.|.....|..|+++|++
T Consensus        11 ~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A           11 GKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCSSHHHHHHHHTTTSC
T ss_pred             CcccCCHhHHHHHHHHhcC
Confidence            4444444444444444443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=96.96  E-value=0.00036  Score=44.69  Aligned_cols=28  Identities=21%  Similarity=0.356  Sum_probs=18.2

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      ++|.|++|       ++.|.....|..|+++|+++
T Consensus         1 ~~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCREC-------GKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTT-------SCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCC-------CCccCChhHHHHHHHHhcCC
Confidence            35666666       66666666666666666655

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=96.94  E-value=0.00037  Score=44.57  Aligned_cols=27  Identities=15%  Similarity=0.351  Sum_probs=15.3

Q ss_pred             eeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487          112 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus       112 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      +|.|++|       ++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            2 EHKCPHC-------DKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCSSC-------CCCCCTTTHHHHHHHHHHSC
T ss_pred             CCcCCCC-------CcccCCHHHHHHHHHHhccC
Confidence            4555555       55555555555565555544

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=96.94  E-value=0.00052  Score=45.50  Aligned_cols=28  Identities=21%  Similarity=0.589  Sum_probs=25.2

Q ss_pred             Ccccccc--cccccccchhhhhhcccc-cCC
Q 006487          145 EKKWKCE--KCSKRYAVQSDWKAHSKT-CGT  172 (643)
Q Consensus       145 eKpfkC~--~CgKsF~~ks~L~~H~rt-hge  172 (643)
                      ++||+|+  .|++.|.....|..|+++ +++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            5899999  899999999999999999 444

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=96.91  E-value=0.00053  Score=45.16  Aligned_cols=27  Identities=26%  Similarity=0.716  Sum_probs=24.4

Q ss_pred             cccccc--cccccccchhhhhhcccc-cCC
Q 006487          146 KKWKCE--KCSKRYAVQSDWKAHSKT-CGT  172 (643)
Q Consensus       146 KpfkC~--~CgKsF~~ks~L~~H~rt-hge  172 (643)
                      |||+|+  .|++.|.....|..|+++ +++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            589998  999999999999999998 554

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=95.81  E-value=0.00021  Score=46.26  Aligned_cols=23  Identities=26%  Similarity=0.531  Sum_probs=13.3

Q ss_pred             ccccccccccccchhhhhhcccc
Q 006487          147 KWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       147 pfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      ||+|++|++.|.....|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQ   24 (29)
Confidence            45555555555555555555555

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.66  E-value=0.00059  Score=43.74  Aligned_cols=26  Identities=23%  Similarity=0.701  Sum_probs=24.1

Q ss_pred             CccccC--cccccccCchhHHhHhhhcC
Q 006487           70 NRFICE--VCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        70 kpy~C~--~CgK~F~~~~~L~~H~r~H~   95 (643)
                      ++|+|+  +|++.|.....|..|+++|+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            479999  99999999999999999984

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=96.63  E-value=0.00098  Score=43.12  Aligned_cols=29  Identities=24%  Similarity=0.313  Sum_probs=25.8

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhH-hhhccCCc
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKH-YSRKHGEK  146 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H-~r~H~geK  146 (643)
                      ++|.|++|       ++.|.....|..| +++|++++
T Consensus         1 k~~~C~~C-------~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLC-------NRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTT-------CCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCccc-------CcccCChHHHHHHHHHHccCCC
Confidence            47899998       9999999999999 78998764

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=96.62  E-value=0.0011  Score=41.79  Aligned_cols=22  Identities=23%  Similarity=0.674  Sum_probs=11.3

Q ss_pred             cccccccccccchhhhhhcccc
Q 006487          148 WKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       148 fkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      |+|++|++.|..+..|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRV   23 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHHH
Confidence            4555555555555555555544

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.22  E-value=0.0032  Score=50.34  Aligned_cols=51  Identities=14%  Similarity=0.232  Sum_probs=32.9

Q ss_pred             CCcccChhhHHhHhh-hccCCcccccccccccccchhhhhhcccccCCceeecC---CCCCcCChHHHHHHHHHhh
Q 006487          126 SRALGDLTGIKKHYS-RKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCD---CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       126 ~k~F~~~s~L~~H~r-~H~geKpfkC~~CgKsF~~ks~L~~H~rthgeKpy~C~---CgK~F~~ks~L~~H~~~Hh  197 (643)
                      ++.|.....|..|+. .|.+.++                     ....++|.|.   |++.+.....|+.|+++.|
T Consensus        10 ~~~f~~~~~l~~Hv~~~Hv~~~~---------------------~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A           10 PESASSLFDLQRHLLKDHVSQDF---------------------KHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCSSHHHHHHHHHHHSCCCCC---------------------CCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCcCCCHHHHHHHHHhhccCccc---------------------CCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            677777777777763 4554331                     0012368884   8888888888888887653

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.0043  Score=49.53  Aligned_cols=15  Identities=20%  Similarity=0.111  Sum_probs=8.5

Q ss_pred             CCCCcCChHHHHHHH
Q 006487          179 CGTLFSRRDSFITHR  193 (643)
Q Consensus       179 CgK~F~~ks~L~~H~  193 (643)
                      |++.|.....|.+|+
T Consensus         9 C~~~f~~~~~l~~Hv   23 (64)
T 1zw8_A            9 CPESASSLFDLQRHL   23 (64)
T ss_dssp             CCCCCSSHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHH
Confidence            555555555555555

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.91  E-value=0.0012  Score=60.03  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=22.0

Q ss_pred             CccccCcccccccCchhHHhHh--hhc
Q 006487           70 NRFICEVCNKGFQREQNLQLHR--RGH   94 (643)
Q Consensus        70 kpy~C~~CgK~F~~~~~L~~H~--r~H   94 (643)
                      +++.|.+|...|.+...+..|.  +.|
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH   57 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKH   57 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHH
Confidence            5689999999999999999998  555

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=95.70  E-value=0.0043  Score=39.49  Aligned_cols=23  Identities=17%  Similarity=0.576  Sum_probs=11.6

Q ss_pred             ccccc--cccccccchhhhhhcccc
Q 006487          147 KWKCE--KCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       147 pfkC~--~CgKsF~~ks~L~~H~rt  169 (643)
                      ||+|.  .|++.|..+..|..|+++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHH
Confidence            44555  555555555555555444

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.17  E-value=0.0098  Score=56.20  Aligned_cols=135  Identities=18%  Similarity=0.293  Sum_probs=83.3

Q ss_pred             CCCCCCCCCCCCCCCCChhhhhcCccccC----------CCCccccCcccccccCchhHHhHhhhcCCCccccccccccc
Q 006487           39 PPPQKKKRNQPGTPNPDAEVIALSPKTLM----------ATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEV  108 (643)
Q Consensus        39 ~~p~~~~c~~cg~~~~~~~~l~~h~k~h~----------~~kpy~C~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~  108 (643)
                      +....+.|.+|...+.+...+   .-.|.          ..+...|+.|.+.+.....+..-.            .....
T Consensus        14 ~~~~~~~C~IC~~~~~~pv~~---~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~------------~~~~i   78 (170)
T 3hcs_A           14 PLESKYECPICLMALREAVQT---PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNF------------AKREI   78 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSEEEC---TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHH------------HHHHH
T ss_pred             CCCCCCCCCCCChhhcCcEEC---CCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHH------------HHHHH
Confidence            445667888888777654221   11111          011236777776655422111000            00112


Q ss_pred             cCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCCh
Q 006487          109 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRR  186 (643)
Q Consensus       109 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~k  186 (643)
                      ......|+.-+|     ...+ ....|..|.. .-.-++..|+.|+..+ .+..|..|+.. ...+.-.|. |+..|. .
T Consensus        79 ~~l~v~C~n~GC-----~~~~-~~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~-~  149 (170)
T 3hcs_A           79 LSLMVKCPNEGC-----LHKM-ELRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMA-F  149 (170)
T ss_dssp             HTSEEECCSTTC-----CCEE-EGGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEE-G
T ss_pred             hhcccCCCCCCC-----Ccee-cHhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccC-H
Confidence            345667764445     5554 3566788873 3345688999999988 67789999975 888999999 999886 4


Q ss_pred             HHHHHHHHHhh
Q 006487          187 DSFITHRAFCD  197 (643)
Q Consensus       187 s~L~~H~~~Hh  197 (643)
                      ..|..|..++.
T Consensus       150 ~~l~~H~~~~~  160 (170)
T 3hcs_A          150 EDKEIHDQNCP  160 (170)
T ss_dssp             GGHHHHHTTCC
T ss_pred             HHHHhHHHhCc
Confidence            67899988773

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.38  E-value=0.01  Score=53.73  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=14.2

Q ss_pred             cCCceeecC-CCCCcCChHHHHHHHH
Q 006487          170 CGTREYRCD-CGTLFSRRDSFITHRA  194 (643)
Q Consensus       170 hgeKpy~C~-CgK~F~~ks~L~~H~~  194 (643)
                      +|+++|.|. |+|.|.+...|..|++
T Consensus        46 tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           46 PGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             GGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCCcceEcccCcchhCCHHHHHHHHh
Confidence            455555555 5555555555555554

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.16  E-value=0.012  Score=53.34  Aligned_cols=74  Identities=16%  Similarity=0.211  Sum_probs=52.5

Q ss_pred             CceeeCCCCCccCCCCCCcccChhhHHhHh--hhccCC-cccccccc------cccccchhhhhhcccc-cCCceeecC-
Q 006487          110 RKVYLCPEPTCVHHDPSRALGDLTGIKKHY--SRKHGE-KKWKCEKC------SKRYAVQSDWKAHSKT-CGTREYRCD-  178 (643)
Q Consensus       110 ~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~--r~H~ge-KpfkC~~C------gKsF~~ks~L~~H~rt-hgeKpy~C~-  178 (643)
                      .+++.|.+|       ...|.+...+..|+  +.|... +.|.+..+      ++.|..    ..+... ...+.|.|+ 
T Consensus        30 ~~~~~C~~C-------~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~C~~   98 (127)
T 1zu1_A           30 FSDTQCKVC-------SAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKA----APAEISDGEDRSKCCPV   98 (127)
T ss_dssp             BCSSEETTT-------TEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSC----CSSCCSSCCCTTTEETT
T ss_pred             CCCCcCcCC-------CCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCC----CccccccCCCCCeEcCC
Confidence            367899999       89999999999999  566543 45555211      222221    112223 466789999 


Q ss_pred             CCCCcCChHHHHHHHH
Q 006487          179 CGTLFSRRDSFITHRA  194 (643)
Q Consensus       179 CgK~F~~ks~L~~H~~  194 (643)
                      |.+.|.....|..|..
T Consensus        99 C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           99 CNMTFSSPVVAESHYI  114 (127)
T ss_dssp             TTEECSSHHHHHHHHT
T ss_pred             CCCEeCCHHHHHHHHC
Confidence            9999999999999984

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.15  E-value=0.055  Score=40.44  Aligned_cols=25  Identities=20%  Similarity=0.557  Sum_probs=21.4

Q ss_pred             ceeecC-CCCCcCChHHHHHHHHHhh
Q 006487          173 REYRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       173 Kpy~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      .+|.|+ |++.|.....|++|++.+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycC   36 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCC   36 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHC
T ss_pred             CceeCCcccccccchHHHHhhhhhcC
Confidence            578898 9999999999999998663

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=92.93  E-value=0.027  Score=51.02  Aligned_cols=33  Identities=24%  Similarity=0.333  Sum_probs=29.2

Q ss_pred             CccccCCCCccccCcccccccCchhHHhHhhhc
Q 006487           62 SPKTLMATNRFICEVCNKGFQREQNLQLHRRGH   94 (643)
Q Consensus        62 h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H   94 (643)
                      ....++++++|.|..|+|.|.+...|..|+++.
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            445678889999999999999999999999765

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=92.03  E-value=0.087  Score=49.58  Aligned_cols=107  Identities=17%  Similarity=0.228  Sum_probs=70.5

Q ss_pred             CCCCCCCCCCChhhhhcC-ccccCCCCcccc--CcccccccCchhHHhHhhhcCCCccccccccccccCceeeCCCCCcc
Q 006487           45 KRNQPGTPNPDAEVIALS-PKTLMATNRFIC--EVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCV  121 (643)
Q Consensus        45 ~c~~cg~~~~~~~~l~~h-~k~h~~~kpy~C--~~CgK~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~  121 (643)
                      .|..|...+.....+... .+.....-...|  .-|...+. ...|..|++.-              ..+++.|+.|   
T Consensus        55 ~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~GC~~~~~-~~~l~~H~~~C--------------~~~~v~C~~C---  116 (170)
T 3hcs_A           55 KCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKME-LRHLEDHQAHC--------------EFALMDCPQC---  116 (170)
T ss_dssp             BCTTTCCBCCGGGCEECHHHHHHHHTSEEECCSTTCCCEEE-GGGHHHHHTTC--------------TTSEEECTTT---
T ss_pred             CCCCCccCcchhhhhhhHHHHHHHhhcccCCCCCCCCceec-HhHHHHHHhcC--------------CceeeECCCC---
Confidence            788887776653211100 011112345678  45887654 56788887544              4567889876   


Q ss_pred             CCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccc-cCCcee
Q 006487          122 HHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREY  175 (643)
Q Consensus       122 ~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy  175 (643)
                          +..+ .+..|..|....-..++..|+.|+..|. ...|..|..+ .|+.+|
T Consensus       117 ----~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~-~~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          117 ----QRPF-QKFHINIHILKDCPRRQVSCDNCAASMA-FEDKEIHDQNCPLALEH  165 (170)
T ss_dssp             ----CCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEE-GGGHHHHHTTCCC----
T ss_pred             ----ChHH-HHHHHHHHhhhhCCCCCeECCCCCCccC-HHHHHhHHHhCcChhhh
Confidence                6666 5677999998888888999999998875 5678999988 676554

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.98  E-value=0.083  Score=39.48  Aligned_cols=23  Identities=17%  Similarity=0.501  Sum_probs=14.9

Q ss_pred             ccccccccccccchhhhhhcccc
Q 006487          147 KWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       147 pfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      +|.|+.|++.|.....|+.||+.
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhhh
Confidence            46666666666666666666663

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=81.37  E-value=0.38  Score=38.92  Aligned_cols=48  Identities=27%  Similarity=0.714  Sum_probs=32.6

Q ss_pred             Cccccc-ccccccccchhhhhhcccc-cCCceeecC-CCCCcCChHHHHHHHH
Q 006487          145 EKKWKC-EKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRA  194 (643)
Q Consensus       145 eKpfkC-~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L~~H~~  194 (643)
                      ..+..| ..|+..+. +..|..|+.. ...++..|. |+..|. +..|..|..
T Consensus        14 ~~~v~C~~~C~~~v~-r~~l~~H~~~~C~~r~v~C~~C~~~~~-~~~l~~H~~   64 (76)
T 2yuc_A           14 FNVIPCPNRCPMKLS-RRDLPAHLQHDCPKRRLKCEFCGCDFS-GEAYESHEG   64 (76)
T ss_dssp             CSCCBCTTCCSCBCC-SSSSTTTTTTSCTTSCCCCSSSCCCCC-HHHHHHTTT
T ss_pred             CcccCCCccccHHhh-HhHHHhhCHhhCCCcceECCCCCCccC-HHHHHHHHh
Confidence            455677 46877664 4567788774 777778888 888775 445666654

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=80.81  E-value=0.71  Score=37.27  Aligned_cols=60  Identities=18%  Similarity=0.385  Sum_probs=42.8

Q ss_pred             cCceeeCC-CCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhcccccCCceeec
Q 006487          109 KRKVYLCP-EPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRC  177 (643)
Q Consensus       109 ~~k~y~C~-~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rthgeKpy~C  177 (643)
                      ...+..|+ .|       +..+. +..|..|+...-..++..|.+|+..|.. ..|..|.......+-.|
T Consensus        13 ~~~~v~C~~~C-------~~~v~-r~~l~~H~~~~C~~r~v~C~~C~~~~~~-~~l~~H~~~Cp~~~v~C   73 (76)
T 2yuc_A           13 SFNVIPCPNRC-------PMKLS-RRDLPAHLQHDCPKRRLKCEFCGCDFSG-EAYESHEGMCPQESSGP   73 (76)
T ss_dssp             CCSCCBCTTCC-------SCBCC-SSSSTTTTTTSCTTSCCCCSSSCCCCCH-HHHHHTTTSCTTSSCCC
T ss_pred             CCcccCCCccc-------cHHhh-HhHHHhhCHhhCCCcceECCCCCCccCH-HHHHHHHhHCCCCccCC
Confidence            44566774 44       66554 4568888877667788999999998864 56899986666665555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	643
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.003
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.003

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.003
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 3/51 (5%)

Query: 145 EKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRC--DCGTLFSRRDSFITHR 193
           +K + C+ C K +  +S    H              CG  F  +   + H 
Sbjct: 1   DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (77), Expect = 0.003
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 145 EKKWKCEKCSKRYAVQSDWKAHSKTCGTRE--YRCD 178
            K + C+ C K ++       H K   T E  ++C 
Sbjct: 3   GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	643
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.33
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.25
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.7
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.66
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.61
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.61
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.59
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.57
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.5
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.49
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.45
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.44
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.42
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.41
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.38
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.37
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.36
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.26
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.23
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.2
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.17
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.15
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.11
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.1
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.01
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.96
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.94
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	97.94
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	97.9
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.85
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.84
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.79
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.78
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.75
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	97.68
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.65
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.62
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.61
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.6
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.54
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.42
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.42
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.4
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.35
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.99
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.94
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.87
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.74
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.64
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.52
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.52
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.45
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.13
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.09
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.01
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.95
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	95.93
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.87
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	95.79
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.47
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.42
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.21
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.13
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.11
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.11
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	94.98
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	94.87
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.83
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.75
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	94.68
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	94.61
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.32
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	94.15
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.11
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	94.1
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.07
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.69
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.61
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	93.43
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.43
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	92.64
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	92.31
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	92.07
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	92.01
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	91.86
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	91.61
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.56
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	91.44
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	91.1
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	90.69
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	90.17
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	89.02
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	89.01
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	88.51
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	88.24
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	87.4
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	86.09
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	85.33
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	82.35
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	81.47
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	80.78
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	80.72

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.5e-13  Score=105.23  Aligned_cols=51  Identities=27%  Similarity=0.683  Sum_probs=25.2

Q ss_pred             Ccccccccccccccchhhhhhcccc-cCCceeecC-CCCCcCChHHHHHHHHHh
Q 006487          145 EKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       145 eKpfkC~~CgKsF~~ks~L~~H~rt-hgeKpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      ||||+|+ |+|.|..+..|..|+++ +++|||.|. |++.|..++.|.+|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            3445552 55555555555555444 444555554 555555555555555443

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.1e-12  Score=100.36  Aligned_cols=53  Identities=21%  Similarity=0.490  Sum_probs=50.5

Q ss_pred             CceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccccccccccccchhhhhhccccc
Q 006487          110 RKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTC  170 (643)
Q Consensus       110 ~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rth  170 (643)
                      ||+|.| +|       ++.|.....|..|+++|+++|||+|.+|++.|...+.|..|+++|
T Consensus         1 EK~y~C-~C-------gk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QC-------GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TT-------SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CC-------CCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            689999 48       999999999999999999999999999999999999999999874

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.6e-09  Score=76.83  Aligned_cols=36  Identities=25%  Similarity=0.648  Sum_probs=24.9

Q ss_pred             hHhhhccCCcccccccccccccchhhhhhcccc-cCC
Q 006487          137 KHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGT  172 (643)
Q Consensus       137 ~H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt-hge  172 (643)
                      +|+++|++||||+|++|+|+|...+.|..|+++ +||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            466777777777777777777777777777776 443

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=2.8e-09  Score=75.00  Aligned_cols=32  Identities=19%  Similarity=0.479  Sum_probs=19.7

Q ss_pred             HhhhccCCcccccccccccccchhhhhhcccc
Q 006487          138 HYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       138 H~r~H~geKpfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      |.|+|++||||+|++|+|+|..++.|.+|+++
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~   33 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhc
Confidence            45566666666666666666666666666555

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=8.7e-09  Score=73.17  Aligned_cols=37  Identities=19%  Similarity=0.415  Sum_probs=28.0

Q ss_pred             cCceeeCCCCCccCCCCCCcccChhhHHhHhh-hccCCccccccc
Q 006487          109 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYS-RKHGEKKWKCEK  152 (643)
Q Consensus       109 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r-~H~geKpfkC~~  152 (643)
                      .+|||.|++|       ++.|.....|++|++ +|++||||+|++
T Consensus         2 ~~Kpy~C~~C-------gk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSC-------GKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSS-------CCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCC-------CCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            3577888877       788888888888865 688888888764

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=4.4e-09  Score=73.57  Aligned_cols=30  Identities=27%  Similarity=0.553  Sum_probs=17.6

Q ss_pred             hhccCCcccccccccccccchhhhhhcccc
Q 006487          140 SRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       140 r~H~geKpfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      |+|++||||+|.+|+|+|..++.|..|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~   30 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKR   30 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcc
Confidence            355566666666666665555555555555

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1e-08  Score=72.51  Aligned_cols=35  Identities=31%  Similarity=0.587  Sum_probs=33.8

Q ss_pred             cCccccCCCCccccCcccccccCchhHHhHhhhcC
Q 006487           61 LSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        61 ~h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      .|+++|+++|||+|++|+|.|....+|..|+++|+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   36 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT   36 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCC
Confidence            68999999999999999999999999999999996

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.1e-08  Score=72.53  Aligned_cols=37  Identities=30%  Similarity=0.646  Sum_probs=33.3

Q ss_pred             CCCccccCcccccccCchhHHhHhh-hcCCCccccccccccccCceeeCCC
Q 006487           68 ATNRFICEVCNKGFQREQNLQLHRR-GHNLPWKLKQKTTKEVKRKVYLCPE  117 (643)
Q Consensus        68 ~~kpy~C~~CgK~F~~~~~L~~H~r-~H~~~~~~~~~~~~~~~~k~y~C~~  117 (643)
                      .+|||+|++|+|.|....+|..|++ +|+             ++|||.|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht-------------~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHT-------------SERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSC-------------CCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccC-------------CCcCcCCcC
Confidence            4699999999999999999999976 684             999999974

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.3e-08  Score=69.58  Aligned_cols=28  Identities=29%  Similarity=0.603  Sum_probs=12.4

Q ss_pred             ccCCcccccccccccccchhhhhhcccc
Q 006487          142 KHGEKKWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       142 H~geKpfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      |++||||+|.+|+|+|..++.|..|+|+
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~   29 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRV   29 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHG
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccc
Confidence            4444444444444444444444444444

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=2.6e-08  Score=70.00  Aligned_cols=34  Identities=32%  Similarity=0.679  Sum_probs=32.4

Q ss_pred             CccccCCCCccccCcccccccCchhHHhHhhhcC
Q 006487           62 SPKTLMATNRFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        62 h~k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      |.++|+++|||+|++|+|.|..+.+|..|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            6789999999999999999999999999999984

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.7e-08  Score=70.49  Aligned_cols=30  Identities=27%  Similarity=0.543  Sum_probs=17.6

Q ss_pred             hhccCCcccccccccccccchhhhhhcccc
Q 006487          140 SRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       140 r~H~geKpfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      |+|++||||+|++|+|.|..+.+|++|++.
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~   30 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQ   30 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccc
Confidence            355666666666666666666666666544

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=3.6e-08  Score=67.36  Aligned_cols=31  Identities=29%  Similarity=0.497  Sum_probs=29.7

Q ss_pred             ccCCCCccccCcccccccCchhHHhHhhhcC
Q 006487           65 TLMATNRFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        65 ~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      +|+++|||+|.+|+|.|..+..|..|+++|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccC
Confidence            5899999999999999999999999999996

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=3e-08  Score=68.64  Aligned_cols=26  Identities=23%  Similarity=0.572  Sum_probs=12.2

Q ss_pred             CCceeecC-CCCCcCChHHHHHHHHHh
Q 006487          171 GTREYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       171 geKpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      |||||+|+ |+|.|.+++.|++|+++|
T Consensus         4 GekPy~C~~C~k~F~~~~~L~~H~r~H   30 (35)
T d1srka_           4 GKRPFVCRICLSAFTTKANCARHLKVH   30 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCccccCCCCCCcccChHHHHHHcccc
Confidence            44444444 444444444444444444

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=4.7e-08  Score=68.17  Aligned_cols=32  Identities=25%  Similarity=0.572  Sum_probs=30.7

Q ss_pred             cccCCCCccccCcccccccCchhHHhHhhhcC
Q 006487           64 KTLMATNRFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        64 k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      ++|+++|||+|.+|+|.|..+..|..|+++|+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            57999999999999999999999999999996

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=7.4e-08  Score=63.27  Aligned_cols=26  Identities=31%  Similarity=0.595  Sum_probs=22.5

Q ss_pred             CceeecC-CCCCcCChHHHHHHHHHhh
Q 006487          172 TREYRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       172 eKpy~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      ||||+|+ |+|.|.+++.|.+|+++|.
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            6888888 8889999999999988884

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=7.9e-08  Score=66.95  Aligned_cols=35  Identities=26%  Similarity=0.690  Sum_probs=31.4

Q ss_pred             eeCCCCCccCCCCCCcccChhhHHhHhhhccCCccccccc
Q 006487          113 YLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEK  152 (643)
Q Consensus       113 y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfkC~~  152 (643)
                      |.|++.+|     +++|.....|++|+++|++||||+|+.
T Consensus         2 f~C~~~~C-----~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPAC-----GKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTT-----CCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCC-----CCeeCChhHhccccCeeCCCCCEeCCC
Confidence            78888666     999999999999999999999999974

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=6.9e-08  Score=66.78  Aligned_cols=30  Identities=23%  Similarity=0.535  Sum_probs=28.8

Q ss_pred             cCCCCccccCcccccccCchhHHhHhhhcC
Q 006487           66 LMATNRFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        66 h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      ++++|||+|++|+|.|..+.+|+.|+++|+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            689999999999999999999999999996

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.9e-07  Score=59.96  Aligned_cols=24  Identities=33%  Similarity=0.863  Sum_probs=22.3

Q ss_pred             ceeecC-CCCCcCChHHHHHHHHHh
Q 006487          173 REYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       173 Kpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      |||+|. |||.|.+++.|.+|+|+|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            789998 999999999999999988

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.7e-07  Score=65.22  Aligned_cols=32  Identities=16%  Similarity=0.473  Sum_probs=29.0

Q ss_pred             cccCCCCccccCcccccccCchhHHhHhhhcC
Q 006487           64 KTLMATNRFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        64 k~h~~~kpy~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      ++|+++|||+|++|+|.|..+.+|+.|++.++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            57999999999999999999999999976543

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=8e-08  Score=70.95  Aligned_cols=28  Identities=21%  Similarity=0.539  Sum_probs=13.6

Q ss_pred             ccCCccccccc--ccccccchhhhhhcccc
Q 006487          142 KHGEKKWKCEK--CSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       142 H~geKpfkC~~--CgKsF~~ks~L~~H~rt  169 (643)
                      |++||||+|++  |+|+|..++.|+.|+++
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~   42 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhccc
Confidence            44444444444  44444444444444444

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.17  E-value=2.5e-07  Score=61.23  Aligned_cols=20  Identities=30%  Similarity=0.569  Sum_probs=8.8

Q ss_pred             CCcccChhhHHhHhhhccCC
Q 006487          126 SRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus       126 ~k~F~~~s~L~~H~r~H~ge  145 (643)
                      ++.|...+.|++|+++|++|
T Consensus         9 ~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           9 TRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBSCHHHHHHHHHTTTSS
T ss_pred             CCCCCCchHcccccCcccCC
Confidence            44444444444444444443

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2e-07  Score=59.86  Aligned_cols=26  Identities=31%  Similarity=0.626  Sum_probs=24.6

Q ss_pred             CccccCcccccccCchhHHhHhhhcC
Q 006487           70 NRFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        70 kpy~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      |||+|.+|+|.|...+.|..|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999983

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.11  E-value=6.8e-07  Score=59.09  Aligned_cols=28  Identities=25%  Similarity=0.652  Sum_probs=26.3

Q ss_pred             cccccccccccccchhhhhhcccc-cCCc
Q 006487          146 KKWKCEKCSKRYAVQSDWKAHSKT-CGTR  173 (643)
Q Consensus       146 KpfkC~~CgKsF~~ks~L~~H~rt-hgeK  173 (643)
                      |||+|++|+|.|..++.|++|+++ +|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            799999999999999999999999 7775

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4e-07  Score=60.19  Aligned_cols=18  Identities=28%  Similarity=0.416  Sum_probs=7.1

Q ss_pred             CCCCcCChHHHHHHHHHh
Q 006487          179 CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       179 CgK~F~~ks~L~~H~~~H  196 (643)
                      |+|.|.+++.|.+|+++|
T Consensus         8 C~k~F~~~s~L~~H~r~H   25 (29)
T d1sp1a_           8 CPKRFMRSDHLSKHIKTH   25 (29)
T ss_dssp             TTCCCSCSHHHHHHHHGG
T ss_pred             CCCeecchHHhhhhcCcc
Confidence            333333333333333333

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.2e-06  Score=57.79  Aligned_cols=29  Identities=24%  Similarity=0.462  Sum_probs=17.3

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCc
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK  146 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geK  146 (643)
                      |||.|++|       ++.|...+.|.+|+++|++||
T Consensus         1 Kpy~C~~C-------~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPEC-------PKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTT-------TCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcC-------CCeecchHHhhhhcCccCCcC
Confidence            45666665       566666666666666666554

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=1.5e-06  Score=56.92  Aligned_cols=26  Identities=15%  Similarity=0.252  Sum_probs=13.9

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhhcc
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH  143 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~  143 (643)
                      |||+|++|       ++.|...+.|.+|+++|+
T Consensus         2 KPy~C~~C-------~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           2 KPFQCRIC-------MRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCEECTTT-------CCEESCHHHHHHHHHHHH
T ss_pred             cCccCCCC-------cCEecccccccccCCCcc
Confidence            45555555       555555555555555554

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.94  E-value=1.1e-06  Score=64.63  Aligned_cols=34  Identities=18%  Similarity=0.458  Sum_probs=30.9

Q ss_pred             ccCceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCc
Q 006487          108 VKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK  146 (643)
Q Consensus       108 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geK  146 (643)
                      .+++||.|++.+|     ++.|...+.|++|+++|++||
T Consensus        14 ~gekpy~C~~~~C-----~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          14 MPDKTFECLFPGC-----TKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             ETTTEEECCCTTC-----CCEECSSSSHHHHHHHHTTTC
T ss_pred             cCCCCeECCcCCC-----CccccCchHHHhhcccccCCC
Confidence            6999999998444     999999999999999999986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.3e-06  Score=57.34  Aligned_cols=31  Identities=19%  Similarity=0.544  Sum_probs=24.6

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCc
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK  146 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geK  146 (643)
                      |||.|++.+|     ++.|...+.|++|+++|++||
T Consensus         1 kpf~C~~~~C-----~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYC-----GKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTC-----CCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCC-----CcCcCChhHhhhhcCcccccC
Confidence            5788877655     888888888888888888875

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3e-06  Score=58.72  Aligned_cols=31  Identities=19%  Similarity=0.509  Sum_probs=29.0

Q ss_pred             eecC---CCCCcCChHHHHHHHHHhhhhhhhhhhcCCCccccCCCCccCC
Q 006487          175 YRCD---CGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYAST  221 (643)
Q Consensus       175 y~C~---CgK~F~~ks~L~~H~~~Hh~~~~~~~~~~~~~~~~~~k~y~C~  221 (643)
                      |.|+   |+|.|.++..|++|+++|                ++++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~H----------------tgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLH----------------SDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHH----------------HTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCee----------------CCCCCEeCC
Confidence            7895   999999999999999999                899999986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=3.8e-06  Score=55.77  Aligned_cols=30  Identities=27%  Similarity=0.500  Sum_probs=22.9

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      |||.|++.+|     +|.|...+.|++|+++|++|
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGC-----RKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTC-----CCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCC-----CceECChhHhhhhcCcCcCC
Confidence            5778877555     78888888888888888775

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=3.3e-06  Score=56.13  Aligned_cols=30  Identities=17%  Similarity=0.391  Sum_probs=24.5

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      |||.|++.+|     +|.|...+.|++|+++|++|
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGC-----GKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTC-----CCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCC-----CceECcHHHcCccccccCCC
Confidence            5788888655     88888888888888888875

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=4.8e-06  Score=55.32  Aligned_cols=25  Identities=28%  Similarity=0.595  Sum_probs=21.1

Q ss_pred             ceeecC---CCCCcCChHHHHHHHHHhh
Q 006487          173 REYRCD---CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       173 Kpy~C~---CgK~F~~ks~L~~H~~~Hh  197 (643)
                      |||+|+   |+|+|.+++.|++|+++|.
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HT   28 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT   28 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccccC
Confidence            688884   8888888888888888884

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=5.8e-06  Score=54.87  Aligned_cols=25  Identities=24%  Similarity=0.502  Sum_probs=19.0

Q ss_pred             ceeecC---CCCCcCChHHHHHHHHHhh
Q 006487          173 REYRCD---CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       173 Kpy~C~---CgK~F~~ks~L~~H~~~Hh  197 (643)
                      |||+|+   |+|.|.+++.|++|+++|.
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~Ht   28 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHT   28 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCc
Confidence            577774   8888888888888888774

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.75  E-value=5.3e-06  Score=55.91  Aligned_cols=26  Identities=35%  Similarity=0.786  Sum_probs=19.0

Q ss_pred             CceeecC---CCCCcCChHHHHHHHHHhh
Q 006487          172 TREYRCD---CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       172 eKpy~C~---CgK~F~~ks~L~~H~~~Hh  197 (643)
                      ||||.|+   |+|.|.+.++|++|+++|.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            5677774   7777777777777777774

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=8.5e-06  Score=54.52  Aligned_cols=26  Identities=31%  Similarity=0.744  Sum_probs=22.9

Q ss_pred             ceeecC---CCCCcCChHHHHHHHHHhhh
Q 006487          173 REYRCD---CGTLFSRRDSFITHRAFCDA  198 (643)
Q Consensus       173 Kpy~C~---CgK~F~~ks~L~~H~~~Hh~  198 (643)
                      |||.|+   |+|.|.+.++|++|+++|.+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htg   29 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccc
Confidence            689994   99999999999999999943

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.65  E-value=1e-05  Score=51.34  Aligned_cols=25  Identities=32%  Similarity=0.743  Sum_probs=21.0

Q ss_pred             CceeecC-CCCCcCChHHHHHHHHHh
Q 006487          172 TREYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       172 eKpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      ||||.|+ |++.|.+.+..++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            5788888 888888888888888877

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=7.2e-06  Score=53.48  Aligned_cols=24  Identities=25%  Similarity=0.574  Sum_probs=20.1

Q ss_pred             ceeecC---CCCCcCChHHHHHHHHHh
Q 006487          173 REYRCD---CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       173 Kpy~C~---CgK~F~~ks~L~~H~~~H  196 (643)
                      |||+|+   |+|.|.+.++|++|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            688884   888888888888888887

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=1.1e-05  Score=53.11  Aligned_cols=25  Identities=32%  Similarity=0.656  Sum_probs=20.8

Q ss_pred             ceeecC---CCCCcCChHHHHHHHHHhh
Q 006487          173 REYRCD---CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       173 Kpy~C~---CgK~F~~ks~L~~H~~~Hh  197 (643)
                      |||+|+   |+|.|.+.+.|.+|+++|.
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            688884   8888888888888888884

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=1.2e-05  Score=52.94  Aligned_cols=29  Identities=24%  Similarity=0.663  Sum_probs=23.8

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhhccC
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG  144 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~g  144 (643)
                      |||.|++.+|     +|.|...+.|++|+++|+|
T Consensus         1 Kp~~C~~~gC-----~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESC-----DRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTC-----CCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCC-----CcEECchhHhhhhcCccCC
Confidence            5788888766     8888888888888888875

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=2.4e-05  Score=52.62  Aligned_cols=30  Identities=20%  Similarity=0.495  Sum_probs=18.6

Q ss_pred             CceeeCCCCCccCCCCCCcccChhhHHhHhhhccC
Q 006487          110 RKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG  144 (643)
Q Consensus       110 ~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~g  144 (643)
                      +|||.|++.+|     +|.|.....|++|+++|+.
T Consensus         1 ErP~~C~~pgC-----~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGC-----DKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTC-----CCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCC-----CCeeCCHHHHHHHhhhccC
Confidence            45666666544     6666666666666666653

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=2.5e-05  Score=50.88  Aligned_cols=28  Identities=25%  Similarity=0.616  Sum_probs=19.8

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhhcc
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH  143 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~  143 (643)
                      |||.|++.+|     +|.|.....|++|+++|+
T Consensus         1 rPf~C~~~gC-----~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGC-----NKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTC-----CCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCc-----CCcCCCHHHHHHHHhhcc
Confidence            4677777655     777777777777777764

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=1.9e-05  Score=50.06  Aligned_cols=26  Identities=31%  Similarity=0.737  Sum_probs=19.9

Q ss_pred             Ccccccccccccccchhhhhhccccc
Q 006487          145 EKKWKCEKCSKRYAVQSDWKAHSKTC  170 (643)
Q Consensus       145 eKpfkC~~CgKsF~~ks~L~~H~rth  170 (643)
                      ||||.|++|++.|.+....++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            57788888888888877777777764

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=2.2e-05  Score=48.29  Aligned_cols=23  Identities=39%  Similarity=0.816  Sum_probs=14.4

Q ss_pred             eeecC-CCCCcCChHHHHHHHHHh
Q 006487          174 EYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       174 py~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      |++|+ |+|.|.+++.|+.|+|.|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~h   24 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCH   24 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGC
T ss_pred             CCccchhhhHhcchhHHHHHhhcc
Confidence            45566 666666666666666655

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=3.9e-05  Score=47.14  Aligned_cols=25  Identities=44%  Similarity=0.813  Sum_probs=23.5

Q ss_pred             ccccCcccccccCchhHHhHhhhcC
Q 006487           71 RFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        71 py~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      |++|+.|+|.|.++..|+.|+|.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            5799999999999999999999985

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00015  Score=47.64  Aligned_cols=33  Identities=24%  Similarity=0.416  Sum_probs=27.9

Q ss_pred             CceeeCCCCCccCCCCCCcccChhhHHhHhhhccCCcccc
Q 006487          110 RKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWK  149 (643)
Q Consensus       110 ~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geKpfk  149 (643)
                      ++...|++|       +|+|.+...|.+|...|.+||||.
T Consensus         3 rk~~~ce~c-------gk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           3 RKQVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CCSEEETTT-------TEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             chhhhHHHH-------HHHHHHHHHHHhhhcccCCCCCCC
Confidence            355678888       899999999999999999999873

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0002  Score=45.96  Aligned_cols=25  Identities=20%  Similarity=0.506  Sum_probs=21.8

Q ss_pred             ceeecC---CCCCcCChHHHHHHHHHhh
Q 006487          173 REYRCD---CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       173 Kpy~C~---CgK~F~~ks~L~~H~~~Hh  197 (643)
                      |||.|.   |.|+|...++|++|++.+|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            689995   9999999999999998765

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.0002  Score=45.94  Aligned_cols=26  Identities=35%  Similarity=0.718  Sum_probs=19.3

Q ss_pred             CceeecC-CCCCcCChHHHHHHHHHhh
Q 006487          172 TREYRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       172 eKpy~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      ||||.|. |..+|++++.+..|.+.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCCcccchHHHHhhccccceEeeeccc
Confidence            5677777 7777777777777777774

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00019  Score=46.05  Aligned_cols=27  Identities=30%  Similarity=0.768  Sum_probs=25.5

Q ss_pred             CCccccCcccccccCchhHHhHhhhcC
Q 006487           69 TNRFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        69 ~kpy~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      +|||.|++|...|+++..+..|.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCCcccchHHHHhhccccceEeeeccc
Confidence            589999999999999999999999984

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00058  Score=47.22  Aligned_cols=29  Identities=38%  Similarity=0.834  Sum_probs=25.5

Q ss_pred             cCCceeecC-CCCCcCChHHHHHHHHHhhh
Q 006487          170 CGTREYRCD-CGTLFSRRDSFITHRAFCDA  198 (643)
Q Consensus       170 hgeKpy~C~-CgK~F~~ks~L~~H~~~Hh~  198 (643)
                      +|.|||.|. |+|.|..++++.+|+..|.+
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~C~k   30 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTSCTK   30 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhhhhh
Confidence            478999999 99999999999999887643

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00052  Score=44.99  Aligned_cols=26  Identities=31%  Similarity=0.673  Sum_probs=24.0

Q ss_pred             CccccCcccccccCchhHHhHhhhcC
Q 006487           70 NRFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        70 kpy~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      |...|+.|+|.|.....|.+|...|.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs   29 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHS   29 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccC
Confidence            56789999999999999999999995

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00068  Score=43.41  Aligned_cols=29  Identities=34%  Similarity=0.785  Sum_probs=22.9

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhhccC
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG  144 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~g  144 (643)
                      |||.|.+.+|     .|.|...+.|++|++.+++
T Consensus         1 KPY~Ck~~gC-----~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGC-----TKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTT-----CCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCC-----CcccCCHHHHHHHHHhhCC
Confidence            5788888777     8888888888888887653

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.45  E-value=0.0008  Score=42.36  Aligned_cols=24  Identities=25%  Similarity=0.510  Sum_probs=21.6

Q ss_pred             ceeecC---CCCCcCChHHHHHHHHHh
Q 006487          173 REYRCD---CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       173 Kpy~C~---CgK~F~~ks~L~~H~~~H  196 (643)
                      .||+|.   |+|+|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            589994   999999999999999987

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0017  Score=40.92  Aligned_cols=27  Identities=22%  Similarity=0.356  Sum_probs=21.5

Q ss_pred             eeCCCCCccCCCCCCcccChhhHHhHhhhccCCc
Q 006487          113 YLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK  146 (643)
Q Consensus       113 y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geK  146 (643)
                      |.|++|       +......+.|++|++.|++++
T Consensus         2 YvC~~C-------g~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEEC-------GIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTT-------CCBCSSHHHHHHHHHHTSSCC
T ss_pred             cccccc-------CcccCCHHHHHHHHHHhcCCC
Confidence            678887       777788888888888888764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0017  Score=40.38  Aligned_cols=24  Identities=21%  Similarity=0.506  Sum_probs=21.1

Q ss_pred             ceeecC-CCCCcCChHHHHHHHHHh
Q 006487          173 REYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       173 Kpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      |||+|. |...-...++|.+|+|+|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            788888 888888888999999887

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0012  Score=41.29  Aligned_cols=24  Identities=21%  Similarity=0.469  Sum_probs=18.2

Q ss_pred             eeecC-CCCCcCChHHHHHHHHHhh
Q 006487          174 EYRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       174 py~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      .+.|. |||.|...+.|++|..+|.
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvht   26 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHT   26 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTS
T ss_pred             cchHHHHhHHHHHHHHHHHHhhccc
Confidence            46777 8888888888888877773

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0021  Score=40.32  Aligned_cols=27  Identities=15%  Similarity=0.268  Sum_probs=15.7

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhhccC
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHG  144 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~g  144 (643)
                      +||+|..|       ...-...+.|..|.+.|++
T Consensus         2 rpfkcqlc-------sy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQIC-------PYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSS-------SCEESSHHHHHHHHTTCCS
T ss_pred             Ccceeeec-------ccccCCchheEEeeecccC
Confidence            55666655       5555555566666666654

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=95.93  E-value=0.0015  Score=39.59  Aligned_cols=23  Identities=22%  Similarity=0.687  Sum_probs=18.9

Q ss_pred             eecC-CCCCcCChHHHHHHHHHhh
Q 006487          175 YRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       175 y~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      |+|. |.+.|..++.|.+|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            6788 8888888888888888773

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0027  Score=39.62  Aligned_cols=27  Identities=30%  Similarity=0.493  Sum_probs=21.5

Q ss_pred             eeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487          112 VYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus       112 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      .+.|.+|       +|+|...+.|++|..+|++|
T Consensus         2 ~hvc~ec-------gkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAEC-------GKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTT-------CCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHH-------hHHHHHHHHHHHHhhcccCC
Confidence            3567777       88888888888888888875

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=95.79  E-value=0.0022  Score=38.87  Aligned_cols=23  Identities=30%  Similarity=0.795  Sum_probs=22.2

Q ss_pred             cccCcccccccCchhHHhHhhhc
Q 006487           72 FICEVCNKGFQREQNLQLHRRGH   94 (643)
Q Consensus        72 y~C~~CgK~F~~~~~L~~H~r~H   94 (643)
                      |+|..|.+.|..++.|.+|+|.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            78999999999999999999998

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.47  E-value=0.004  Score=39.09  Aligned_cols=27  Identities=22%  Similarity=0.500  Sum_probs=22.3

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhhc
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRK  142 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H  142 (643)
                      .||+|+.-+|     ++.|...+.|++|.++|
T Consensus         2 ~py~c~hegc-----dk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGC-----DKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTC-----CCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCc-----cccccCHHHHhhhhhcc
Confidence            4788887766     88888888888888877

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0029  Score=39.65  Aligned_cols=25  Identities=16%  Similarity=0.393  Sum_probs=14.6

Q ss_pred             CceeecC-CCCCcCChHHHHHHHHHh
Q 006487          172 TREYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       172 eKpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      |+||+|. |...-+..+.|..|.|.|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~h   26 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSH   26 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTC
T ss_pred             CCcceeeecccccCCchheEEeeecc
Confidence            3556665 655555566666665555

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.21  E-value=0.0057  Score=37.54  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=19.6

Q ss_pred             eCCCCCccCCCCCCcccChhhHHhHhhhccCCc
Q 006487          114 LCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK  146 (643)
Q Consensus       114 ~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~geK  146 (643)
                      .|+.|       .+.|..+..|+.|-|.|++||
T Consensus         2 qcp~c-------~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTC-------HKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTT-------CCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcch-------HHHHHHhHhhhhccccccCCC
Confidence            46666       788888888888888887775

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0032  Score=39.67  Aligned_cols=23  Identities=17%  Similarity=0.572  Sum_probs=10.8

Q ss_pred             ccccccccccccchhhhhhcccc
Q 006487          147 KWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       147 pfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      ||.|..|...|.++.+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            34444444444444444444443

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0062  Score=41.37  Aligned_cols=27  Identities=22%  Similarity=0.661  Sum_probs=24.3

Q ss_pred             CCceeecC---CCCCcCChHHHHHHHHHhh
Q 006487          171 GTREYRCD---CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       171 geKpy~C~---CgK~F~~ks~L~~H~~~Hh  197 (643)
                      .+|||.|.   |+.+|...+.|..|++.|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            47999994   9999999999999999884

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0042  Score=38.60  Aligned_cols=26  Identities=23%  Similarity=0.510  Sum_probs=24.4

Q ss_pred             CccccCcccccccCchhHHhHhhhcC
Q 006487           70 NRFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        70 kpy~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      |||+|..|...-...+.|..|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999984

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0048  Score=42.52  Aligned_cols=27  Identities=19%  Similarity=0.523  Sum_probs=23.9

Q ss_pred             CCCCccccCcccccccCchhHHhHhhh
Q 006487           67 MATNRFICEVCNKGFQREQNLQLHRRG   93 (643)
Q Consensus        67 ~~~kpy~C~~CgK~F~~~~~L~~H~r~   93 (643)
                      ++.|||.|.+|+|.|.....+.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            367999999999999999999999743

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.0045  Score=39.15  Aligned_cols=23  Identities=39%  Similarity=0.654  Sum_probs=10.1

Q ss_pred             ccccccccccccchhhhhhcccc
Q 006487          147 KWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       147 pfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      ||.|.+|..+-...++|+.|+++
T Consensus         2 py~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             Cccccccccccccchhhhhhhhc
Confidence            44444444444444444444443

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.83  E-value=0.0047  Score=37.95  Aligned_cols=24  Identities=25%  Similarity=0.660  Sum_probs=14.9

Q ss_pred             ccccccccccchhhhhhcccc-cCC
Q 006487          149 KCEKCSKRYAVQSDWKAHSKT-CGT  172 (643)
Q Consensus       149 kC~~CgKsF~~ks~L~~H~rt-hge  172 (643)
                      .|+.|.|+|..+..|+.|-|. +||
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            466666666666666666655 444

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.75  E-value=0.0077  Score=37.96  Aligned_cols=30  Identities=27%  Similarity=0.596  Sum_probs=26.2

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      |||.|.+-+|     .|.|.....|.+|..+|++|
T Consensus         1 ~pfpc~~egc-----~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGC-----EKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSC-----CCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccc-----cccchhhhhhhhhhccccCC
Confidence            5788988877     89999999999999999875

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0093  Score=37.47  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=16.9

Q ss_pred             eecC-CCCCcCChHHHHHHHHHhh
Q 006487          175 YRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       175 y~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      |.|+ |+......+-|++|+|.|.
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT   25 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHT   25 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             ccccccCcccCCHHHHHHHHHHhc
Confidence            6777 7777777777777777774

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.61  E-value=0.0069  Score=41.33  Aligned_cols=27  Identities=26%  Similarity=0.588  Sum_probs=24.9

Q ss_pred             CCccccCcccccccCchhHHhHhhhcC
Q 006487           69 TNRFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        69 ~kpy~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      .+.|+|.+|+|.|.+...|--|++.|.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhc
Confidence            367999999999999999999999995

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.0052  Score=38.78  Aligned_cols=25  Identities=16%  Similarity=0.425  Sum_probs=14.9

Q ss_pred             ceeecC-CCCCcCChHHHHHHHHHhh
Q 006487          173 REYRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       173 Kpy~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      +||+|+ |..--+++++|.+|++..|
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHHc
Confidence            456666 6666666666666665444

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.15  E-value=0.013  Score=36.85  Aligned_cols=22  Identities=23%  Similarity=0.609  Sum_probs=20.8

Q ss_pred             eeecC-CCCCcCChHHHHHHHHH
Q 006487          174 EYRCD-CGTLFSRRDSFITHRAF  195 (643)
Q Consensus       174 py~C~-CgK~F~~ks~L~~H~~~  195 (643)
                      ||.|. |...|+.+.+|.+|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            79999 99999999999999984

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.011  Score=38.14  Aligned_cols=29  Identities=28%  Similarity=0.583  Sum_probs=21.9

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHh-hhccC
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHY-SRKHG  144 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~-r~H~g  144 (643)
                      |||.|+..+|     .|+|...+.-.+|+ |+|..
T Consensus         1 kPY~C~~~gC-----~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGC-----SKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTC-----CCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCCh-----hhhhcchhhhhhhccccccC
Confidence            5788888766     88888888877886 66654

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.015  Score=36.71  Aligned_cols=26  Identities=19%  Similarity=0.410  Sum_probs=23.6

Q ss_pred             ceeecC-CCCCcCChHHHHHHHHHhhh
Q 006487          173 REYRCD-CGTLFSRRDSFITHRAFCDA  198 (643)
Q Consensus       173 Kpy~C~-CgK~F~~ks~L~~H~~~Hh~  198 (643)
                      |||.|. |..+....++|+.|+++.|.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            699999 99999999999999997653

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.015  Score=36.67  Aligned_cols=27  Identities=30%  Similarity=0.518  Sum_probs=24.4

Q ss_pred             cccccccccccccchhhhhhcccc-cCC
Q 006487          146 KKWKCEKCSKRYAVQSDWKAHSKT-CGT  172 (643)
Q Consensus       146 KpfkC~~CgKsF~~ks~L~~H~rt-hge  172 (643)
                      +||+|.+|.......++|..|++. |+.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            699999999999999999999988 763

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.69  E-value=0.02  Score=35.37  Aligned_cols=21  Identities=29%  Similarity=0.940  Sum_probs=17.6

Q ss_pred             eeecC-CCCCcCChHHHHHHHH
Q 006487          174 EYRCD-CGTLFSRRDSFITHRA  194 (643)
Q Consensus       174 py~C~-CgK~F~~ks~L~~H~~  194 (643)
                      ||+|. |||.|-++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            67888 8888888888888875

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.61  E-value=0.015  Score=36.47  Aligned_cols=27  Identities=37%  Similarity=0.797  Sum_probs=24.6

Q ss_pred             CCccccCcccccccCchhHHhHhhhcC
Q 006487           69 TNRFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        69 ~kpy~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      +.-|.|..|...|+++..|+.|+-.|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeeccc
Confidence            356999999999999999999999886

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=93.43  E-value=0.015  Score=37.43  Aligned_cols=22  Identities=41%  Similarity=0.859  Sum_probs=18.1

Q ss_pred             eeecC-CCCCcCChHHHHHHHHH
Q 006487          174 EYRCD-CGTLFSRRDSFITHRAF  195 (643)
Q Consensus       174 py~C~-CgK~F~~ks~L~~H~~~  195 (643)
                      ||.|. |++.|.+++-|.+|...
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcccccccchhhHHHHHHHHHHH
Confidence            68888 88888888888888753

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.0093  Score=38.40  Aligned_cols=24  Identities=25%  Similarity=0.593  Sum_probs=19.3

Q ss_pred             ceeecC---CCCCcCChHHHHHHH-HHh
Q 006487          173 REYRCD---CGTLFSRRDSFITHR-AFC  196 (643)
Q Consensus       173 Kpy~C~---CgK~F~~ks~L~~H~-~~H  196 (643)
                      |||.|+   |.|.|...+.-.+|+ |+|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CCccccCCChhhhhcchhhhhhhccccc
Confidence            688885   888888888888886 666

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=92.64  E-value=0.017  Score=37.12  Aligned_cols=25  Identities=12%  Similarity=0.429  Sum_probs=18.8

Q ss_pred             ccccccccccccchhhhhhcccc-cC
Q 006487          147 KWKCEKCSKRYAVQSDWKAHSKT-CG  171 (643)
Q Consensus       147 pfkC~~CgKsF~~ks~L~~H~rt-hg  171 (643)
                      ||.|.+|++.|.++.-|.+|... |+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            67788888888888887777665 54

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.31  E-value=0.035  Score=33.44  Aligned_cols=21  Identities=24%  Similarity=0.765  Sum_probs=17.6

Q ss_pred             eeecC-CCCCcCChHHHHHHHH
Q 006487          174 EYRCD-CGTLFSRRDSFITHRA  194 (643)
Q Consensus       174 py~C~-CgK~F~~ks~L~~H~~  194 (643)
                      ||+|. |...|..+..|..|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            78888 8888888888888874

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.07  E-value=0.042  Score=37.18  Aligned_cols=30  Identities=20%  Similarity=0.541  Sum_probs=26.2

Q ss_pred             cCceeeCCCCCccCCCCCCcccChhhHHhHhhhcc
Q 006487          109 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKH  143 (643)
Q Consensus       109 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~  143 (643)
                      .+|||.|...+|     +..|.....|..|+..|.
T Consensus         3 ddkPF~C~~pGC-----~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGC-----GQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTT-----CCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCc-----cccccchHHHHHhhhhhe
Confidence            478999999888     899999999999988875

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.01  E-value=0.033  Score=34.36  Aligned_cols=23  Identities=35%  Similarity=0.640  Sum_probs=20.9

Q ss_pred             ccccCcccccccCchhHHhHhhh
Q 006487           71 RFICEVCNKGFQREQNLQLHRRG   93 (643)
Q Consensus        71 py~C~~CgK~F~~~~~L~~H~r~   93 (643)
                      ||+|..|+|.|-++.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            69999999999999999999754

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.86  E-value=0.048  Score=36.06  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=25.0

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      |.|.|.+-+|  ..-++.|.....|..|+|+|++|
T Consensus         1 k~y~C~W~~C--~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           1 KEFVCHWGGC--SRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             SCCCCCBTTC--TTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCeEEECCCC--CCCCCcchhHHHHHHHHhhcCCC
Confidence            3577777665  22356799999999999999986

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.61  E-value=0.056  Score=33.81  Aligned_cols=29  Identities=17%  Similarity=0.378  Sum_probs=19.9

Q ss_pred             CceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487          110 RKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus       110 ~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      +..|.|..|       ...|...-.|+.|+..|++|
T Consensus         2 eqvftcs~c-------qe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVC-------QETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSS-------CCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHH-------HHHHHHHHhheeeeecccCC
Confidence            345667776       67777777777777777664

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.56  E-value=0.048  Score=34.22  Aligned_cols=25  Identities=16%  Similarity=0.446  Sum_probs=20.7

Q ss_pred             ceeecC---CCCCcCChHHHHHHHHHhh
Q 006487          173 REYRCD---CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       173 Kpy~C~---CgK~F~~ks~L~~H~~~Hh  197 (643)
                      |||.|.   |.|.|...-.|.+|...|.
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHH
T ss_pred             CCcCcccccccccchhhhhhhhhhcccc
Confidence            578883   9999999999999988774

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.44  E-value=0.024  Score=34.16  Aligned_cols=22  Identities=27%  Similarity=0.739  Sum_probs=16.5

Q ss_pred             ccccccccccccchhhhhhccc
Q 006487          147 KWKCEKCSKRYAVQSDWKAHSK  168 (643)
Q Consensus       147 pfkC~~CgKsF~~ks~L~~H~r  168 (643)
                      ||+|..|...|..+.+|..|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            6777777777777777777764

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.10  E-value=0.061  Score=35.31  Aligned_cols=24  Identities=33%  Similarity=0.935  Sum_probs=21.2

Q ss_pred             eeecC-CCCCcCChHHHHHHHHHhh
Q 006487          174 EYRCD-CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       174 py~C~-CgK~F~~ks~L~~H~~~Hh  197 (643)
                      .|+|. |+|.|.++..+.+|-..|.
T Consensus         4 afvcskcgktftrrntm~rha~nc~   28 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCA   28 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             eeeecccccchhcchHHHHHhhhcC
Confidence            48999 9999999999999988774

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.69  E-value=0.081  Score=35.87  Aligned_cols=28  Identities=14%  Similarity=0.322  Sum_probs=17.2

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      +.|+|.+|       ++.|.+...|--|++.|..+
T Consensus         4 r~~~C~~C-------~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           4 RSYTCSFC-------KREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSEECTTT-------CCEESSHHHHHHHHHTTCCS
T ss_pred             CccCCCCC-------CCccCCcccccchHhhhcch
Confidence            45666666       66666666666666666544

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.17  E-value=0.097  Score=31.60  Aligned_cols=22  Identities=32%  Similarity=0.726  Sum_probs=15.4

Q ss_pred             eecC-CCCCcCChHHHHHHHHHh
Q 006487          175 YRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       175 y~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      |.|+ |-|.|.+++++..|.++-
T Consensus         2 ypcp~cfkeftrkdnm~ahvkii   24 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKII   24 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEEe
Confidence            6677 777777777777776654

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.02  E-value=0.053  Score=32.78  Aligned_cols=22  Identities=27%  Similarity=0.614  Sum_probs=14.5

Q ss_pred             cccccccccccchhhhhhcccc
Q 006487          148 WKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       148 fkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      |.|+.|=|.|.++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            5666666666666666666655

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.01  E-value=0.062  Score=38.12  Aligned_cols=26  Identities=27%  Similarity=0.571  Sum_probs=23.5

Q ss_pred             CccccCcccccccCchhHHhHhhhcC
Q 006487           70 NRFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        70 kpy~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      --|.|..|+|.|.....|+.|...|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            45899999999999999999998883

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=88.51  E-value=0.15  Score=31.28  Aligned_cols=23  Identities=26%  Similarity=0.703  Sum_probs=20.3

Q ss_pred             eecC---CCCCcCChHHHHHHHHHhh
Q 006487          175 YRCD---CGTLFSRRDSFITHRAFCD  197 (643)
Q Consensus       175 y~C~---CgK~F~~ks~L~~H~~~Hh  197 (643)
                      |.|.   |+|.|+....|+.|+-.|.
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            7894   9999999999999998773

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.24  E-value=0.1  Score=32.29  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=22.6

Q ss_pred             ccccCcccccccCchhHHhHhhhcC
Q 006487           71 RFICEVCNKGFQREQNLQLHRRGHN   95 (643)
Q Consensus        71 py~C~~CgK~F~~~~~L~~H~r~H~   95 (643)
                      |-+|++|......+..|+.|.|+|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4589999999999999999999983

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.40  E-value=0.076  Score=32.82  Aligned_cols=21  Identities=29%  Similarity=0.618  Sum_probs=10.3

Q ss_pred             cccccccccccchhhhhhccc
Q 006487          148 WKCEKCSKRYAVQSDWKAHSK  168 (643)
Q Consensus       148 fkC~~CgKsF~~ks~L~~H~r  168 (643)
                      |.|+.|+....++++|..|+|
T Consensus         3 ~qcphc~tiiarksdlrvhlr   23 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLR   23 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhh
Confidence            445555544445555544444

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.09  E-value=0.23  Score=35.17  Aligned_cols=24  Identities=25%  Similarity=0.571  Sum_probs=21.9

Q ss_pred             ceeecC-CCCCcCChHHHHHHHHHh
Q 006487          173 REYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       173 Kpy~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      -.|.|- |+|.|.....|+.|...|
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             ceeeccccccccCCHHHHhHhHHhc
Confidence            458899 999999999999999988

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.33  E-value=0.29  Score=30.21  Aligned_cols=18  Identities=11%  Similarity=0.063  Sum_probs=11.5

Q ss_pred             CCcccChhhHHhHhhhcc
Q 006487          126 SRALGDLTGIKKHYSRKH  143 (643)
Q Consensus       126 ~k~F~~~s~L~~H~r~H~  143 (643)
                      ......+..|+.|.|+|.
T Consensus         9 syscsskaalrvh~rihc   26 (28)
T d1x5wa1           9 SYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SCEESSHHHHHHHHGGGC
T ss_pred             ccccCcHHHHHHhhcccc
Confidence            566666666666666664

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.35  E-value=0.19  Score=32.86  Aligned_cols=23  Identities=22%  Similarity=0.631  Sum_probs=20.2

Q ss_pred             ccccccccccccchhhhhhcccc
Q 006487          147 KWKCEKCSKRYAVQSDWKAHSKT  169 (643)
Q Consensus       147 pfkC~~CgKsF~~ks~L~~H~rt  169 (643)
                      .|.|..|+|+|.+...+.+|-..
T Consensus         4 afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhhh
Confidence            48899999999999999998765

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.47  E-value=0.48  Score=29.15  Aligned_cols=23  Identities=22%  Similarity=0.567  Sum_probs=20.8

Q ss_pred             eeecC-CCCCcCChHHHHHHHHHh
Q 006487          174 EYRCD-CGTLFSRRDSFITHRAFC  196 (643)
Q Consensus       174 py~C~-CgK~F~~ks~L~~H~~~H  196 (643)
                      .|.|+ |.....+++.|+.|++.-
T Consensus         2 k~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CccCCcchhheeehhhhhHHhhhc
Confidence            48999 999999999999999854

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=80.78  E-value=0.39  Score=30.49  Aligned_cols=30  Identities=30%  Similarity=0.583  Sum_probs=24.0

Q ss_pred             ceeeCCCCCccCCCCCCcccChhhHHhHhhhccCC
Q 006487          111 KVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGE  145 (643)
Q Consensus       111 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~ge  145 (643)
                      |.|.|...+|     +..|.....|..|+-.|++|
T Consensus         2 k~~iCsf~dC-----~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADC-----GAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGG-----CCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCc-----chhhccchhhhHHhhhhcCC
Confidence            5678877766     88888888888888888875

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.72  E-value=0.41  Score=31.45  Aligned_cols=25  Identities=20%  Similarity=0.518  Sum_probs=19.0

Q ss_pred             ceeecC---CC---CCcCChHHHHHHHHHhh
Q 006487          173 REYRCD---CG---TLFSRRDSFITHRAFCD  197 (643)
Q Consensus       173 Kpy~C~---Cg---K~F~~ks~L~~H~~~Hh  197 (643)
                      |.|.|.   |.   +.|..+..|..|+|+|.
T Consensus         1 k~y~C~W~~C~R~~~pf~a~YkLv~H~R~HT   31 (33)
T d2glia2           1 KEFVCHWGGCSRELRPFKAQYMLVVHMRRHT   31 (33)
T ss_dssp             SCCCCCBTTCTTTTCCCSSHHHHHHHTHHHH
T ss_pred             CCeEEECCCCCCCCCcchhHHHHHHHHhhcC
Confidence            357774   65   45888999999999885