BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006488
         (643 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P10909|CLUS_HUMAN Clusterin OS=Homo sapiens GN=CLU PE=1 SV=1
          Length = 449

 Score = 33.9 bits (76), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 16/26 (61%)

Query: 73  HGKTGCNRLKSGCCKCRRIESIDGLT 98
           H  TGC R+K  C KCR I S+D  T
Sbjct: 290 HNSTGCLRMKDQCDKCREILSVDCST 315


>sp|Q29549|CLUS_PIG Clusterin OS=Sus scrofa GN=CLU PE=1 SV=1
          Length = 446

 Score = 33.9 bits (76), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 73  HGKTGCNRLKSGCCKCRRIESID 95
           H  TGC R+K  C KCR I S+D
Sbjct: 289 HNSTGCLRMKDQCEKCREILSVD 311


>sp|Q6G1K8|MNME_BARHE tRNA modification GTPase MnmE OS=Bartonella henselae (strain ATCC
           49882 / Houston 1) GN=mnmE PE=3 SV=1
          Length = 435

 Score = 33.5 bits (75), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 392 HIREYYWI----DMKKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEFMPHIG 442
           H+R+   +    DM+   E+Y  +T    +   NKF++Y +   PWL++F    G
Sbjct: 290 HVRDADLVILVYDMQNPKEVYLPETSAEIWRVGNKFDLYEENKEPWLIQFSALTG 344


>sp|Q9XSC5|CLUS_RABIT Clusterin OS=Oryctolagus cuniculus GN=CLU PE=2 SV=1
          Length = 447

 Score = 33.1 bits (74), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 73  HGKTGCNRLKSGCCKCRRIESID 95
           H  TGC R+K  C KC+ I S+D
Sbjct: 288 HNSTGCLRMKDQCAKCQEILSVD 310


>sp|Q39548|KSB_CUCMA Ent-kaur-16-ene synthase, chloroplastic OS=Cucurbita maxima PE=1
           SV=1
          Length = 789

 Score = 33.1 bits (74), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 9/161 (5%)

Query: 44  NKGTGYAELHNGLKSRWRVCVFHGVDCDSHGKTGCNRLKSGCCKCRRIESIDGLTV---D 100
           ++ TG A       S     +F GVD D+  KTG    +    + +++     L+V   D
Sbjct: 4   SRPTGVARFAASSSSSSSASLFPGVDVDTTTKTGALHFEETKERIKKLFDKVELSVSAYD 63

Query: 101 NGRQPSFPNKSESNE---PNVQDFKLDRQLKNGKAGISSNDKLNASGSITNTVHKVWAKS 157
                  P+ +  N+   P   ++ LD Q  +G  G+  ND+L    ++ +T+  V    
Sbjct: 64  TAWVAMVPSPNSLNQPLFPECINWVLDSQHADGSWGLLHNDQLLMKANLLSTLACVLTLK 123

Query: 158 VEDEAWDLLRESIVYYCGNPVGTIAANDPNDSTILNYDQVF 198
             +   D + +++ +   N     +A D N  + + +D +F
Sbjct: 124 RWNIGHDHMSKALDFIKSN---IASATDENQRSPVGFDIIF 161


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 250,466,853
Number of Sequences: 539616
Number of extensions: 10851068
Number of successful extensions: 23275
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 23270
Number of HSP's gapped (non-prelim): 14
length of query: 643
length of database: 191,569,459
effective HSP length: 124
effective length of query: 519
effective length of database: 124,657,075
effective search space: 64697021925
effective search space used: 64697021925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)