BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006489
(643 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 453 bits (1165), Expect = e-127, Method: Compositional matrix adjust.
Identities = 255/580 (43%), Positives = 358/580 (61%), Gaps = 9/580 (1%)
Query: 60 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRS 119
++L LA P+ +L A L ++SV S+ P F GKIID++ T ++ L +
Sbjct: 9 KLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIY--TNPTVDYSDNLTRLCL 66
Query: 120 TILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLS 179
+ ++FL G+ A+R +L ++ +R+V RLR +LFS ++ QE+AF+D TRTGEL++
Sbjct: 67 GLSAVFL---CGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELIN 123
Query: 180 RLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFG 239
RLS DT ++ + T NLS+ LR + A +G+ MF S L L VVP +S+ +G
Sbjct: 124 RLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYG 183
Query: 240 RFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAK 299
R+LR+L+ TQ EE G +RTVR+F +E EI +Y+ KVD ++L ++A
Sbjct: 184 RYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 243
Query: 300 VVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFIXXXXXXXXXXXXXXXXXX 359
FFG + L V+ V+ G L + MT G L+SF+
Sbjct: 244 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYS 303
Query: 360 VAMKAAGASRRVFQLLDRVSSMP-KSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGI 418
MK GA R+++LL+R +P G G +E +V FAYP+RP + +
Sbjct: 304 ELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDF 363
Query: 419 TLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIV 478
+L + SGS ALVGPSG GKST+ +L+ R YDP G I L+G + +++ L KI V
Sbjct: 364 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTV 423
Query: 479 SQEPVLFNCSIEENIAYGCDGKAS--SADIENAAKMANAHDFISNFPEKYQTFVGERGVR 536
SQEP+LF+CSI ENIAYG D +S + +I+ A++ANA FI NFP+ + T VGE+GV
Sbjct: 424 SQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483
Query: 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 596
LSGGQKQR+AIARAL+ NP+ILLLDEATSALDAE+EYLVQ+A+D LM GRTVLVIAHRLS
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLS 543
Query: 597 TVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTALVKRQ 635
T+++A+ VAV+ G+I E G HEELLSK G+Y L+ +Q
Sbjct: 544 TIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 583
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 450 bits (1157), Expect = e-126, Method: Compositional matrix adjust.
Identities = 254/580 (43%), Positives = 357/580 (61%), Gaps = 9/580 (1%)
Query: 60 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRS 119
++L LA P+ +L A L ++SV S+ P F GKIID++ T ++ L +
Sbjct: 40 KLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIY--TNPTVDYSDNLTRLCL 97
Query: 120 TILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLS 179
+ ++FL G+ A+R +L ++ +R+V RLR +LFS ++ QE+AF+D TRTGEL++
Sbjct: 98 GLSAVFL---CGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELIN 154
Query: 180 RLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFG 239
RLS DT ++ + T NLS+ LR + A +G+ MF S L L VVP +S+ +G
Sbjct: 155 RLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYG 214
Query: 240 RFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAK 299
R+LR+L+ TQ EE G +RTVR+F +E EI +Y+ KVD ++L ++A
Sbjct: 215 RYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 274
Query: 300 VVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFIXXXXXXXXXXXXXXXXXX 359
FFG + L V+ V+ G L + MT G L+SF+
Sbjct: 275 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYS 334
Query: 360 VAMKAAGASRRVFQLLDRVSSMP-KSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGI 418
MK GA R+++LL+R +P G G +E +V FAYP+RP + +
Sbjct: 335 ELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDF 394
Query: 419 TLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIV 478
+L + SGS ALVGPSG GKST+ +L+ R YDP G I L+G + +++ L KI V
Sbjct: 395 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTV 454
Query: 479 SQEPVLFNCSIEENIAYGCDGKAS--SADIENAAKMANAHDFISNFPEKYQTFVGERGVR 536
SQEP+LF+CSI ENIAYG D +S + +I+ A++ANA FI NFP+ + T VGE+GV
Sbjct: 455 SQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 514
Query: 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 596
LSGGQKQR+AIARAL+ NP+ILLLDEATSALDAE+EYLVQ+A+D LM GRTVLVIAH LS
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLS 574
Query: 597 TVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTALVKRQ 635
T+++A+ VAV+ G+I E G HEELLSK G+Y L+ +Q
Sbjct: 575 TIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 614
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 348 bits (892), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 221/632 (34%), Positives = 340/632 (53%), Gaps = 33/632 (5%)
Query: 23 PLLDHGGRRKRNDASENGNVTDLEHGDAVPAANVGFGRVLALAKPDAGKLII----ATVA 78
P++D R DA +LE +A +L A+P A L I AT+
Sbjct: 709 PVIDEKEERIGKDALSRLK-QELEENNA---QKTNLFEILYHARPHALSLFIGMSTATIG 764
Query: 79 LLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALR 138
I S+ F +++ +G+ A+ L+ L ++ +C+ L
Sbjct: 765 GFIYPTYSVFFTSF----MNVFAGN------PADFLSQGHFWALMFLVLAAAQGICSFLM 814
Query: 139 AWLFSSASERVVARLRKNLFSHLINQEIAFYDVTR--TGELLSRLSEDTQIIKNAATTNL 196
+ ASE + LR LF ++++Q I F+D + +G++ +RL+ D ++ A
Sbjct: 815 TFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRF 874
Query: 197 SEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQXXXXXX 256
S + L + G+G F W++ LL + ++P ++ GR + K+
Sbjct: 875 STVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADS 934
Query: 257 XXXXEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSV 316
E+ +RTV++ A+E + EK+D K +++A + GL +G A+S L +
Sbjct: 935 GKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGC--ASSVLYL 992
Query: 317 IVVVIY--GANLTITG--SMTPGALTSFIXXXXXXXXXXXXXXXXXXVAMKAAGASRRVF 372
+ Y G L IT +M P + + KA A +F
Sbjct: 993 LNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIF 1052
Query: 373 QLLDRVS---SMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIA 429
+L ++S S+ +G + L G+V +V FAYP RP +LKG++ + G +A
Sbjct: 1053 GMLRKISKIDSLSLAGEKKKL---YGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLA 1109
Query: 430 LVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSI 489
LVGPSG GKST+ L+ERFYD + G+I ++G + ++ EH +I+IVSQEP LF+CSI
Sbjct: 1110 LVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSI 1169
Query: 490 EENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548
ENI YG D + A +E AA++AN H+FI+ PE ++T VG+RG +LSGGQKQR+AIA
Sbjct: 1170 AENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIA 1229
Query: 549 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVS 608
RAL+ NP+ILLLDEATSALD ESE +VQ+A+D +GRT +VIAHRL+TV +AD +AVVS
Sbjct: 1230 RALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVS 1289
Query: 609 DGEIVESGTHEELLSKGGVYTALVKRQLQEPK 640
+G I+E GTH +L+S+ G Y L ++Q+ E K
Sbjct: 1290 NGTIIEKGTHTQLMSEKGAYYKLTQKQMTEKK 1321
Score = 340 bits (872), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 186/494 (37%), Positives = 288/494 (58%), Gaps = 8/494 (1%)
Query: 146 SERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLST 205
+E++ RLR+ ++ QEI+++D +G L ++L ++ + +K + A + LS
Sbjct: 164 AEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQ 223
Query: 206 AFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQXXXXXXXXXXEESFG 265
G F SW+LTL+ L V P ++ + + + + EE+
Sbjct: 224 FITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETIS 283
Query: 266 AIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGAN 325
+IRTV S + E+ RYS V+E K G+ + +G+ FG + A++ +S + G
Sbjct: 284 SIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVG 343
Query: 326 LTITGSMTPGALTSFIXXXXXXXXXXXXXXXXXXVAMKAAGASRRVFQLLDRVSSMPKSG 385
GS+ G + + V A GA+ ++++LDR P
Sbjct: 344 WVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDR---KPVID 400
Query: 386 NQCPLGDQD----GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTI 441
+ G +D G++ +++V F YPSRP+ +L+G+ L++ +G +ALVG SG GKSTI
Sbjct: 401 SSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTI 460
Query: 442 ANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKA 501
+L+ R+YD +KGKI ++GV + +I+ E L + +++VSQEP LFNC+IEENI+ G +G
Sbjct: 461 ISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEG-I 519
Query: 502 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 561
+ ++ A KMANA FI P Y T VG+RG +LSGGQKQR+AIARAL+ NP+ILLLD
Sbjct: 520 TREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLD 579
Query: 562 EATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 621
EATSALDAESE +VQ A+D KGRT ++IAHRLST+++AD + +G++VE G H L
Sbjct: 580 EATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRAL 639
Query: 622 LSKGGVYTALVKRQ 635
+++ G+Y LV Q
Sbjct: 640 MAQQGLYYDLVTAQ 653
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 342 bits (878), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 193/494 (39%), Positives = 281/494 (56%), Gaps = 6/494 (1%)
Query: 145 ASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLS 204
A+ R + ++R+ F ++NQEI ++DV GEL +RL++D I + + ++
Sbjct: 135 AAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMA 194
Query: 205 TAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQXXXXXXXXXXEESF 264
T F G F WKLTL+ L + P + ++ + + L + K EE
Sbjct: 195 TFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVL 254
Query: 265 GAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGA 324
AIRTV +F +K E+ RY+ ++E +LG+++A + G S + YG
Sbjct: 255 AAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGT 314
Query: 325 NLTITGSMTPGALTSFIXXXXXXXXXXXXXXXXXXVAMKAAGASRRVFQLLDR---VSSM 381
+L I+ + G + + A GA+ VF+++D + S
Sbjct: 315 SLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSF 374
Query: 382 PKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTI 441
KSG++ P Q G +E ++ F+YPSR +LKG+ LK+ SG +ALVG SG GKST
Sbjct: 375 SKSGHK-PDNIQ-GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTT 432
Query: 442 ANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKA 501
L++R YDP+ G + ++G + I+ +L I +VSQEPVLF +I ENI YG +
Sbjct: 433 VQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-DV 491
Query: 502 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 561
+ +IE A K ANA+DFI P ++ T VGERG +LSGGQKQR+AIARAL+ NP+ILLLD
Sbjct: 492 TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLD 551
Query: 562 EATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 621
EATSALD ESE +VQ A+D +GRT +VIAHRLSTV++AD +A G IVE G H+EL
Sbjct: 552 EATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDEL 611
Query: 622 LSKGGVYTALVKRQ 635
+ + G+Y LV Q
Sbjct: 612 MREKGIYFKLVMTQ 625
Score = 328 bits (841), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 208/597 (34%), Positives = 324/597 (54%), Gaps = 26/597 (4%)
Query: 51 VPAANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFG---GKIIDIVS--GDTE 105
VP A+ F R+L L + + V + A ++ L P F K++ + + G E
Sbjct: 688 VPPAS--FWRILKLNSTEWPYFV---VGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPE 742
Query: 106 TPEQKAEALAAVRSTILSIFLIV-IVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQ 164
T Q + + +FLI+ I+ + L+ + F A E + RLR +F ++ Q
Sbjct: 743 TQRQNSNLFSL-------LFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQ 795
Query: 165 EIAFYDVTR--TGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTL 222
+++++D + TG L +RL+ D +K A + L+ +N++ G+ W+LTL
Sbjct: 796 DVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTL 855
Query: 223 LALVVVPAISVAVRKFGRFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEISR 282
L L +VP I++A + L + K + E+ RTV S +E+ +
Sbjct: 856 LLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETM 915
Query: 283 YSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMT-PGALTSFI 341
Y++ + + +++A V G+ F A S +GA L MT L F
Sbjct: 916 YAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFS 975
Query: 342 XXXXXXXXXXXXXXXXXXVAMKAAGASR--RVFQLLDRVSSMPKSGNQCPLGDQDGEVEL 399
A AS R+ + + S G + + +G V+
Sbjct: 976 AIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNM--LEGNVQF 1033
Query: 400 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLN 459
V F YP+RP+ VL+G++L++ G +ALVG SG GKST+ L+ERFYDP+ G + L+
Sbjct: 1034 SGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLD 1093
Query: 460 GVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKA-SSADIENAAKMANAHDF 518
G + +++ + L ++ IVSQEP+LF+CSI ENIAYG + + S +I AAK AN H F
Sbjct: 1094 GKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQF 1153
Query: 519 ISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDA 578
I + P+KY T VG++G +LSGGQKQR+AIARAL+ P ILLLDEATSALD ESE +VQ+A
Sbjct: 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEA 1213
Query: 579 MDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 635
+D +GRT +VIAHRLST+Q+AD + V+ +G++ E GTH++LL++ G+Y ++V Q
Sbjct: 1214 LDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQ 1270
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 342 bits (878), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 193/494 (39%), Positives = 281/494 (56%), Gaps = 6/494 (1%)
Query: 145 ASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLS 204
A+ R + ++R+ F ++NQEI ++DV GEL +RL++D I + + ++
Sbjct: 135 AAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMA 194
Query: 205 TAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQXXXXXXXXXXEESF 264
T F G F WKLTL+ L + P + ++ + + L + K EE
Sbjct: 195 TFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVL 254
Query: 265 GAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGA 324
AIRTV +F +K E+ RY+ ++E +LG+++A + G S + YG
Sbjct: 255 AAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGT 314
Query: 325 NLTITGSMTPGALTSFIXXXXXXXXXXXXXXXXXXVAMKAAGASRRVFQLLDR---VSSM 381
+L I+ + G + + A GA+ VF+++D + S
Sbjct: 315 SLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSF 374
Query: 382 PKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTI 441
KSG++ P Q G +E ++ F+YPSR +LKG+ LK+ SG +ALVG SG GKST
Sbjct: 375 SKSGHK-PDNIQ-GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTT 432
Query: 442 ANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKA 501
L++R YDP+ G + ++G + I+ +L I +VSQEPVLF +I ENI YG +
Sbjct: 433 VQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-DV 491
Query: 502 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 561
+ +IE A K ANA+DFI P ++ T VGERG +LSGGQKQR+AIARAL+ NP+ILLLD
Sbjct: 492 TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLD 551
Query: 562 EATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 621
EATSALD ESE +VQ A+D +GRT +VIAHRLSTV++AD +A G IVE G H+EL
Sbjct: 552 EATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDEL 611
Query: 622 LSKGGVYTALVKRQ 635
+ + G+Y LV Q
Sbjct: 612 MREKGIYFKLVMTQ 625
Score = 328 bits (841), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 208/597 (34%), Positives = 324/597 (54%), Gaps = 26/597 (4%)
Query: 51 VPAANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFG---GKIIDIVS--GDTE 105
VP A+ F R+L L + + V + A ++ L P F K++ + + G E
Sbjct: 688 VPPAS--FWRILKLNSTEWPYFV---VGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPE 742
Query: 106 TPEQKAEALAAVRSTILSIFLIV-IVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQ 164
T Q + + +FLI+ I+ + L+ + F A E + RLR +F ++ Q
Sbjct: 743 TQRQNSNLFSL-------LFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQ 795
Query: 165 EIAFYDVTR--TGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTL 222
+++++D + TG L +RL+ D +K A + L+ +N++ G+ W+LTL
Sbjct: 796 DVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTL 855
Query: 223 LALVVVPAISVAVRKFGRFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEISR 282
L L +VP I++A + L + K + E+ RTV S +E+ +
Sbjct: 856 LLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETM 915
Query: 283 YSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMT-PGALTSFI 341
Y++ + + +++A V G+ F A S +GA L MT L F
Sbjct: 916 YAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFS 975
Query: 342 XXXXXXXXXXXXXXXXXXVAMKAAGASR--RVFQLLDRVSSMPKSGNQCPLGDQDGEVEL 399
A AS R+ + + S G + + +G V+
Sbjct: 976 AIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNM--LEGNVQF 1033
Query: 400 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLN 459
V F YP+RP+ VL+G++L++ G +ALVG SG GKST+ L+ERFYDP+ G + L+
Sbjct: 1034 SGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLD 1093
Query: 460 GVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKA-SSADIENAAKMANAHDF 518
G + +++ + L ++ IVSQEP+LF+CSI ENIAYG + + S +I AAK AN H F
Sbjct: 1094 GKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQF 1153
Query: 519 ISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDA 578
I + P+KY T VG++G +LSGGQKQR+AIARAL+ P ILLLDEATSALD ESE +VQ+A
Sbjct: 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEA 1213
Query: 579 MDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 635
+D +GRT +VIAHRLST+Q+AD + V+ +G++ E GTH++LL++ G+Y ++V Q
Sbjct: 1214 LDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQ 1270
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 335 bits (858), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 205/577 (35%), Positives = 303/577 (52%), Gaps = 5/577 (0%)
Query: 60 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIID-IVSGDTETPEQKAEALAAVR 118
R L KP ++ + +I +LIP ID +++ T ++K L
Sbjct: 4 RYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63
Query: 119 STILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELL 178
+++F+ VIV +R +L S +++ +RK L++HL FY + G+++
Sbjct: 64 G--IALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVI 121
Query: 179 SRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKF 238
SR+ D + K+ T L + T I L MF KLTL AL + P + V F
Sbjct: 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 239 GRFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQA 298
LR+L+ + E I V+SFA E NE + +K L L+
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 299 KVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFIXXXXXXXXXXXXXXXXX 358
+ F +N + + I+V+ GA L I+GS+T G L +F+
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301
Query: 359 XVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGI 418
++ + RVFQL+D + P+ + G +++D V F Y +LK I
Sbjct: 302 TTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAP-ILKDI 360
Query: 419 TLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIV 478
L + G +A VG SGGGKST+ NLI RFYD G+IL++G + + L +I +V
Sbjct: 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLV 420
Query: 479 SQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 538
Q+ +LF+ +++ENI G A+ ++ AAKMANAHDFI N P+ Y T VGERGV+LS
Sbjct: 421 QQDNILFSDTVKENILLG-RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479
Query: 539 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV 598
GGQKQR++IAR + NP IL+LDEATSALD ESE ++Q+A+D L K RT L++AHRLST+
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI 539
Query: 599 QSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 635
AD + V+ +G IVE+GTH EL++K G Y L Q
Sbjct: 540 THADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQ 576
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 311 bits (797), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 211/606 (34%), Positives = 318/606 (52%), Gaps = 43/606 (7%)
Query: 47 HGDAVPAANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTET 106
H D + F R+ P LI+A +AL++ + S + ++D G T+
Sbjct: 2 HNDKDLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD- 60
Query: 107 PEQKAEALAAVRSTILSIFLIVI----VGSVCTALRAWLFSSASERVVARLRKNLFSHLI 162
RS +L + L+VI + + + + ++ S S +VV +R+ LF H++
Sbjct: 61 -----------RSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMM 109
Query: 163 NQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLG-FMFATSWKLT 221
+AF+D TG LLSR++ D++ + ++++ L +R + IGL MF SW+L+
Sbjct: 110 GMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVRE-GASIIGLFIMMFYYSWQLS 168
Query: 222 LLALVVVPAISVAVRKFGRFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEIS 281
++ +V+ P +S+A+R + R +S Q E+ + V F ++ E
Sbjct: 169 IILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETK 228
Query: 282 RYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLS----------VIVVVIYGANL-TITG 330
R+ +KV K+ LQ K+V +AS++S + V+Y A+ ++
Sbjct: 229 RF-DKVSN--KMRLQGMKMV--------SASSISDPIIQLIASLALAFVLYAASFPSVMD 277
Query: 331 SMTPGALTSFIXXXXXXXXXXXXXXXXXXVAMKAAGASRRVFQLLDRVSSMPKSGNQCPL 390
S+T G +T + A + +F +LD S K + +
Sbjct: 278 SLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILD--SEQEKDEGKRVI 335
Query: 391 GDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD 450
G++E +V F YP R L+ I LK+ +G +ALVG SG GKSTIA+LI RFYD
Sbjct: 336 DRATGDLEFRNVTFTYPGREVP-ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394
Query: 451 PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAA 510
+G IL++G L E + L ++++VSQ LFN ++ NIAY + S IE AA
Sbjct: 395 IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAA 454
Query: 511 KMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 570
+MA A DFI+ T +GE GV LSGGQ+QR+AIARAL+ + IL+LDEATSALD E
Sbjct: 455 RMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 571 SEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTA 630
SE +Q A+D L K RT LVIAHRLST++ AD + VV DG IVE GTH ELL++ GVY
Sbjct: 515 SERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQ 574
Query: 631 LVKRQL 636
L K Q
Sbjct: 575 LHKMQF 580
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 309 bits (791), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 205/597 (34%), Positives = 317/597 (53%), Gaps = 25/597 (4%)
Query: 47 HGDAVPAANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTET 106
H D + F R+ P LI+A VAL++ + S + ++D G T+
Sbjct: 2 HNDKDLSTWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKTD- 60
Query: 107 PEQKAEALAAVRSTILSIFLIVI----VGSVCTALRAWLFSSASERVVARLRKNLFSHLI 162
RS ++ + L+VI + + + + ++ S S +VV +R+ LF H++
Sbjct: 61 -----------RSVLVWMPLVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMM 109
Query: 163 NQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLG-FMFATSWKLT 221
++F+D TG LLSR++ D++ + ++++ L +R + IGL MF SW+L+
Sbjct: 110 GMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVRE-GASIIGLFIMMFYYSWQLS 168
Query: 222 LLALVVVPAISVAVRKFGRFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEIS 281
++ +V+ P +S+A+R + R +S Q E+ + V F ++ E
Sbjct: 169 IILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETK 228
Query: 282 RYSEKVDETLKL-GLQQAKVVGLFFGGLNAASTLSVIVVVIYGANL-TITGSMTPGALTS 339
R+ +KV ++L G++ + + ++L+ + V+Y A+ ++ S+T G +T
Sbjct: 229 RF-DKVSNRMRLQGMKMVSASSISDPIIQLIASLA-LAFVLYAASFPSVMDSLTAGTITV 286
Query: 340 FIXXXXXXXXXXXXXXXXXXVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVEL 399
+ A + +F +LD S K + + G+VE
Sbjct: 287 VFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILD--SEQEKDEGKRVIERATGDVEF 344
Query: 400 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLN 459
+V F YP R + L+ I LK+ +G +ALVG SG GKSTIA+LI RFYD +G+IL++
Sbjct: 345 RNVTFTYPGR-DVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMD 403
Query: 460 GVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFI 519
G L E + L ++++VSQ LFN ++ NIAY + S IE AA+MA A DFI
Sbjct: 404 GHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFI 463
Query: 520 SNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAM 579
+ T +GE GV LSGGQ+QR+AIARAL+ + IL+LDEATSALD ESE +Q A+
Sbjct: 464 NKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 523
Query: 580 DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 636
D L K RT LVIAHRLST++ AD + VV DG IVE GTH +LL GVY L K Q
Sbjct: 524 DELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQF 580
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 301 bits (772), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 187/583 (32%), Positives = 313/583 (53%), Gaps = 26/583 (4%)
Query: 60 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRS 119
R+L +P LI+ V + ++S+ +L P GK ID+V R
Sbjct: 27 RLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVV-------------FVPRRF 73
Query: 120 TILSIFLIVIVGSV--CTALRAWL----FSSASERVVARLRKNLFSHLINQEIAFYDVTR 173
+L +++ I+G++ T+L WL + S+ VV RLRK LF L + F+D T
Sbjct: 74 DLLPRYML-ILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTP 132
Query: 174 TGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISV 233
G+++SR+ D I N ++ + + T + MF + L+L+ L +VP +
Sbjct: 133 HGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVL 192
Query: 234 AVRKFGRFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEISRYSEKVDETL-K 292
+ R+ ++ Q EE + ++ F +E+ E+ ++ ++V+E+L K
Sbjct: 193 ITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKF-DRVNESLRK 251
Query: 293 LGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFIXXXXXXXXXXX 352
+G + G+ +N + L ++ +G L + +T G + +FI
Sbjct: 252 VGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLN 311
Query: 353 XXXXXXXVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNH 412
+ A ++ R+F++LD + + L + GE+E +VWF+Y +
Sbjct: 312 ELSNQFNMIQMALASAERIFEILD-LEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKP- 369
Query: 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLH 472
VLK IT + G K+ALVGP+G GK+TI NL+ RFYD +G+IL++G+ + +I L
Sbjct: 370 -VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLR 428
Query: 473 RKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGE 532
I IV Q+ +LF+ +++EN+ YG G A+ +I+ AAK+ ++ FI + PE Y+T + +
Sbjct: 429 SSIGIVLQDTILFSTTVKENLKYGNPG-ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTD 487
Query: 533 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIA 592
G LS GQ+Q +AI RA + NP+IL+LDEATS +D ++E +Q AM LM+G+T ++IA
Sbjct: 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIA 547
Query: 593 HRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 635
HRL+T+++AD + V+ DGEIVE G H+EL+ K G Y L Q
Sbjct: 548 HRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 291 bits (745), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 187/584 (32%), Positives = 302/584 (51%), Gaps = 17/584 (2%)
Query: 58 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAV 117
F R+ + L+++T+AL+I + + + ++D G+ E+ +
Sbjct: 13 FKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESN--------FL 64
Query: 118 RSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGEL 177
R I ++ V + ++ S S VV ++R+ LF+H ++ + F+D TG L
Sbjct: 65 RILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGL 124
Query: 178 LSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRK 237
LSR++ D++ + A + L +R ++ L MF SW+L+L+ +VV P ++ A+
Sbjct: 125 LSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISF 184
Query: 238 FGRFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 297
+ R++S Q E+ + V S+ ++ E R+ +KV +++ Q
Sbjct: 185 VSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRF-DKVSNSMRQ--QT 241
Query: 298 AKVVG---LFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFIXXXXXXXXXXXXX 354
K+V + + ++L++ V+ + +I +TPG T
Sbjct: 242 MKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKAL 301
Query: 355 XXXXXVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMV 414
+ A + +F L+D + + + +GEV++ DV F Y +
Sbjct: 302 TSVTSEFQRGMAACQTLFGLMDLETE--RDNGKYEAERVNGEVDVKDVTFTYQGKEKP-A 358
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474
L ++ + G +ALVG SG GKSTIANL RFYD G I L+G + + +L R
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418
Query: 475 ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERG 534
++VSQ LFN +I NIAY +G+ + IE AA+ A+A +FI N P+ T +GE G
Sbjct: 419 FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENG 478
Query: 535 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHR 594
LSGGQ+QRVAIARAL+ + +L+LDEATSALD ESE +Q A+D L K +TVLVIAHR
Sbjct: 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHR 538
Query: 595 LSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 638
LST++ AD + VV +GEI+E G H +LL++ G Y L + Q E
Sbjct: 539 LSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQFGE 582
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 237 bits (604), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/254 (47%), Positives = 165/254 (64%), Gaps = 3/254 (1%)
Query: 382 PKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTI 441
P SG+ PL + G V+ DV FAYP+ PN VL+G+T L G ALVGP+G GKST+
Sbjct: 3 PLSGSLAPL-NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
Query: 442 ANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKA 501
A L++ Y P GK+LL+G PLV+ H +LH +++ V QEP+LF S ENIAYG
Sbjct: 62 AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP 121
Query: 502 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 561
+ +I A + AHDFIS FP+ Y T VGE G +LSGGQ+Q VA+ARAL+ PR+L+LD
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 562 EATSALDAESEYLVQDAM--DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHE 619
+ATSALDA ++ VQ + RTVL+I H+LS + A + + +G + E GTH
Sbjct: 182 QATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHL 241
Query: 620 ELLSKGGVYTALVK 633
+L+ +GG Y ++V+
Sbjct: 242 QLMERGGCYRSMVE 255
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 233 bits (593), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 119/254 (46%), Positives = 163/254 (64%), Gaps = 3/254 (1%)
Query: 382 PKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTI 441
P SG+ PL + G V+ DV FAYP+ PN VL+G+T L G ALVGP+G GKST+
Sbjct: 3 PLSGSLAPL-NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
Query: 442 ANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKA 501
A L++ Y P GK+LL+G PLV+ H +LH +++ V QEP+LF S ENIAYG
Sbjct: 62 AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP 121
Query: 502 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 561
+ +I A + AHDFIS FP+ Y T VGE G +LSGGQ+Q VA+ARAL+ PR+L+LD
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 562 EATSALDAESEYLVQDAM--DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHE 619
ATSALDA ++ VQ + RTVL+I +LS + A + + +G + E GTH
Sbjct: 182 NATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHL 241
Query: 620 ELLSKGGVYTALVK 633
+L+ +GG Y ++V+
Sbjct: 242 QLMERGGCYRSMVE 255
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 228 bits (581), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 117/254 (46%), Positives = 162/254 (63%), Gaps = 3/254 (1%)
Query: 382 PKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTI 441
P SG+ PL + G V+ DV FAYP+ PN VL+G+T L G ALVGP+G GKST+
Sbjct: 3 PLSGSLAPL-NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
Query: 442 ANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKA 501
A L++ Y P GK+LL+G PLV+ H +LH +++ V QEP+LF S ENIAYG
Sbjct: 62 AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP 121
Query: 502 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 561
+ +I A + AHDFIS FP+ Y T VGE G +L+ GQ+Q VA+ARAL+ PR+L+LD
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILD 181
Query: 562 EATSALDAESEYLVQDAM--DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHE 619
ATSALDA ++ VQ + RTVL+I +LS + A + + +G + E GTH
Sbjct: 182 NATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHL 241
Query: 620 ELLSKGGVYTALVK 633
+L+ +GG Y ++V+
Sbjct: 242 QLMERGGCYRSMVE 255
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 228 bits (580), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 404 FAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPL 463
FAY + +L+ I+ + S IA GPSGGGKSTI +L+ERFY P G+I ++G P+
Sbjct: 9 FAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI 66
Query: 464 VEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFP 523
IS E+ +I VSQ+ + +I EN+ YG +G + D+ +A A F+ N P
Sbjct: 67 DNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMP 126
Query: 524 EKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM 583
++ T VGERGV++SGGQ+QR+AIARA + NP+IL+LDEAT++LD+ESE +VQ A+DSLM
Sbjct: 127 DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM 186
Query: 584 KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 636
KGRT LVIAHRLST+ AD + + G+I SG H EL++ +Y V QL
Sbjct: 187 KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQL 239
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 226 bits (577), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/261 (45%), Positives = 166/261 (63%), Gaps = 3/261 (1%)
Query: 382 PKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTI 441
P SG PL +G V+ DV FAYP+RP+ +VL+G+T L G ALVGP+G GKST+
Sbjct: 1 PPSGLLTPL-HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTV 59
Query: 442 ANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKA 501
A L++ Y P G++LL+G PL + H +LHR+++ V QEP +F S++ENIAYG K
Sbjct: 60 AALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKP 119
Query: 502 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 561
+ +I AA + AH FIS P+ Y T V E G +LSGGQ+Q VA+ARAL+ P +L+LD
Sbjct: 120 TMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILD 179
Query: 562 EATSALDAESEYLVQDAM--DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHE 619
+ATSALDA S+ V+ + R+VL+I LS V+ AD + + G I E GTH+
Sbjct: 180 DATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQ 239
Query: 620 ELLSKGGVYTALVKRQLQEPK 640
+L+ K G Y A+V+ P+
Sbjct: 240 QLMEKKGCYWAMVQAPADAPE 260
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 222 bits (565), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 125/275 (45%), Positives = 174/275 (63%), Gaps = 11/275 (4%)
Query: 371 VFQLLDR---VSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSK 427
+F LL V +P +G PL Q G +E ++V F+Y L+ ++ ++ G
Sbjct: 28 MFDLLKEETEVKDLPGAG---PLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQT 82
Query: 428 IALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC 487
+ALVGPSG GKSTI L+ RFYD G I ++G + +++ L I +V Q+ VLFN
Sbjct: 83 LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142
Query: 488 SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547
+I +NI YG A + ++E AA+ A HD I FPE Y+T VGERG++LSGG+KQRVAI
Sbjct: 143 TIADNIRYG-RVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAI 201
Query: 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV 607
AR ++ P I+LLDEATSALD +E +Q ++ + RT +V+AHRLSTV +AD + V+
Sbjct: 202 ARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVI 261
Query: 608 SDGEIVESGTHEELLSKGGVYTALVKRQLQEPKTE 642
DG IVE G HE LLS+GGVY + QLQ+ + E
Sbjct: 262 KDGCIVERGRHEALLSRGGVYADMW--QLQQGQEE 294
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 161/239 (67%), Gaps = 2/239 (0%)
Query: 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 456
+E DV F+YP + NH LK I + SG+ ALVG +G GKSTIA L+ RFYD +G I
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDI 76
Query: 457 LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAH 516
+ G + + + + I IV Q+ +LFN +I+ NI YG A+ ++ A K A +
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYG-KLDATDEEVIKATKSAQLY 135
Query: 517 DFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQ 576
DFI P+K+ T VG +G++LSGG++QR+AIAR L+ +P+I++ DEATS+LD+++EYL Q
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 577 DAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 635
A++ L K RT+++IAHRLST+ SA+++ +++ G+IVE GTH++LL G Y + Q
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQ 254
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 211 bits (537), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 158/580 (27%), Positives = 289/580 (49%), Gaps = 28/580 (4%)
Query: 66 KPDAGKLIIATVALLIASVSSILIPKFGGKIID--IVSGDTETPEQKAEALAAVRSTILS 123
KP ++A + +++ + + P +I+D I GD + V T +
Sbjct: 19 KPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD----------FSLVLKTGIL 68
Query: 124 IFLIVIVGSV----CTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLS 179
+ ++ ++G+V CT ++ AS+ A LR++LF +++ I+ + T L++
Sbjct: 69 MLIVALIGAVGGIGCTVFASY----ASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLIT 124
Query: 180 RLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSW--KLTLLALVVVPAISVAVRK 237
RL+ D ++N L +R F+G G + A S KL+ + + ++P I +
Sbjct: 125 RLTNDVTQLQNLVMMLLRIVVRA-PLLFVG-GIVMAVSINVKLSSVLIFLIPPIVLLFVW 182
Query: 238 FGRFLRELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 297
+ L K Q E+ +R VR+F +E+ E + K +E+L+ +
Sbjct: 183 LTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENF-RKANESLRRSIIS 241
Query: 298 AKVVGLFFGGLNA-ASTLSVIVVVIYGANLTITGSMTPGALTSFIXXXXXXXXXXXXXXX 356
A + +F L + +I V+ +G L M G++ ++
Sbjct: 242 AFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGN 301
Query: 357 XXXVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLK 416
++A+ +++RV ++L+ ++ ++ N L + +G V ++V F Y + VL
Sbjct: 302 ILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDP-VLS 360
Query: 417 GITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476
G+ + GS +A++G +G GKST+ NLI R DP +G++ ++ + + + + L IS
Sbjct: 361 GVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHIS 420
Query: 477 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 536
V QE VLF+ +I+EN+ +G + A+ +I AAK+A HDFI + PE Y + V G
Sbjct: 421 AVPQETVLFSGTIKENLKWGRE-DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRN 479
Query: 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 596
SGGQKQR++IARAL+ P++L+LD+ TS++D +E + D + KG T +I ++
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIP 539
Query: 597 TVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 636
T AD + V+ +G++ GTH+ELL Y + + Q
Sbjct: 540 TALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQF 579
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 208 bits (529), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 115/242 (47%), Positives = 159/242 (65%), Gaps = 5/242 (2%)
Query: 396 EVELDDVWFAY-PSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG 454
++ ++ F Y P P ++L I L + G I +VG SG GKST+ LI+RFY P G
Sbjct: 1 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 455 KILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMAN 514
++L++G L L R++ +V Q+ VL N SI +NI+ G S + AAK+A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAG 117
Query: 515 AHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYL 574
AHDFIS E Y T VGE+G LSGGQ+QR+AIARAL+ NP+IL+ DEATSALD ESE++
Sbjct: 118 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 177
Query: 575 VQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG-GVYTALVK 633
+ M + KGRTV++IAHRLSTV++AD + V+ G+IVE G H+ELLS+ +Y+ L +
Sbjct: 178 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
Query: 634 RQ 635
Q
Sbjct: 238 LQ 239
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 208 bits (529), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 115/242 (47%), Positives = 159/242 (65%), Gaps = 5/242 (2%)
Query: 396 EVELDDVWFAY-PSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG 454
++ ++ F Y P P ++L I L + G I +VG SG GKST+ LI+RFY P G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 455 KILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMAN 514
++L++G L L R++ +V Q+ VL N SI +NI+ G S + AAK+A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAG 123
Query: 515 AHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYL 574
AHDFIS E Y T VGE+G LSGGQ+QR+AIARAL+ NP+IL+ DEATSALD ESE++
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 575 VQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG-GVYTALVK 633
+ M + KGRTV++IAHRLSTV++AD + V+ G+IVE G H+ELLS+ +Y+ L +
Sbjct: 184 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Query: 634 RQ 635
Q
Sbjct: 244 LQ 245
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 208 bits (529), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 115/242 (47%), Positives = 159/242 (65%), Gaps = 5/242 (2%)
Query: 396 EVELDDVWFAY-PSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG 454
++ ++ F Y P P ++L I L + G I +VG SG GKST+ LI+RFY P G
Sbjct: 3 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 455 KILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMAN 514
++L++G L L R++ +V Q+ VL N SI +NI+ G S + AAK+A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAG 119
Query: 515 AHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYL 574
AHDFIS E Y T VGE+G LSGGQ+QR+AIARAL+ NP+IL+ DEATSALD ESE++
Sbjct: 120 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 179
Query: 575 VQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG-GVYTALVK 633
+ M + KGRTV++IAHRLSTV++AD + V+ G+IVE G H+ELLS+ +Y+ L +
Sbjct: 180 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 239
Query: 634 RQ 635
Q
Sbjct: 240 LQ 241
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/242 (47%), Positives = 159/242 (65%), Gaps = 5/242 (2%)
Query: 396 EVELDDVWFAY-PSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG 454
++ ++ F Y P P ++L I L + G I +VG SG GKST+ LI+RFY P G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 455 KILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMAN 514
++L++G L L R++ +V Q+ VL N SI +NI+ G S + AAK+A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAG 123
Query: 515 AHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYL 574
AHDFIS E Y T VGE+G LSGGQ+QR+AIARAL+ NP+IL+ D+ATSALD ESE++
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHV 183
Query: 575 VQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG-GVYTALVK 633
+ M + KGRTV++IAHRLSTV++AD + V+ G+IVE G H+ELLS+ +Y+ L +
Sbjct: 184 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Query: 634 RQ 635
Q
Sbjct: 244 LQ 245
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/242 (47%), Positives = 159/242 (65%), Gaps = 5/242 (2%)
Query: 396 EVELDDVWFAY-PSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG 454
++ ++ F Y P P ++L I L + G I +VG +G GKST+ LI+RFY P G
Sbjct: 3 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 455 KILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMAN 514
++L++G L L R++ +V Q+ VL N SI +NI+ G S + AAK+A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAG 119
Query: 515 AHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYL 574
AHDFIS E Y T VGE+G LSGGQ+QR+AIARAL+ NP+IL+ DEATSALD ESE++
Sbjct: 120 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 179
Query: 575 VQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG-GVYTALVK 633
+ M + KGRTV++IAHRLSTV++AD + V+ G+IVE G H+ELLS+ +Y+ L +
Sbjct: 180 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 239
Query: 634 RQ 635
Q
Sbjct: 240 LQ 241
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/242 (47%), Positives = 158/242 (65%), Gaps = 5/242 (2%)
Query: 396 EVELDDVWFAY-PSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG 454
++ ++ F Y P P ++L I L + G I +VG SG GKST+ LI+RFY P G
Sbjct: 1 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 455 KILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMAN 514
++L++G L L R++ +V Q+ VL N SI +NI+ G S + AAK+A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAG 117
Query: 515 AHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYL 574
AHDFIS E Y T VGE+G LSGGQ+QR+AIARAL+ NP+IL+ DEATSALD ESE++
Sbjct: 118 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 177
Query: 575 VQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG-GVYTALVK 633
+ M + KGRTV++IA RLSTV++AD + V+ G+IVE G H+ELLS+ +Y+ L +
Sbjct: 178 IMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
Query: 634 RQ 635
Q
Sbjct: 238 LQ 239
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/242 (47%), Positives = 158/242 (65%), Gaps = 5/242 (2%)
Query: 396 EVELDDVWFAY-PSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG 454
++ ++ F Y P P ++L I L + G I +VG SG GKST+ LI+RFY P G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 455 KILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMAN 514
++L++G L L R++ +V Q+ VL N SI +NI+ G S + AAK+A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAG 123
Query: 515 AHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYL 574
AHDFIS E Y T VGE+G LSGGQ+QR+AIARAL+ NP+IL+ DEATSALD ESE++
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 575 VQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG-GVYTALVK 633
+ M + KGRTV++IA RLSTV++AD + V+ G+IVE G H+ELLS+ +Y+ L +
Sbjct: 184 IMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Query: 634 RQ 635
Q
Sbjct: 244 LQ 245
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 127/231 (54%), Gaps = 22/231 (9%)
Query: 408 SRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS 467
+R + L GIT + G+ +A+VG G GKS++ + + D ++G + + G
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------- 66
Query: 468 HEHLHRKISIVSQEPVLFNCSIEENIAYGC--DGKASSADIENAAKMANAHDFISNFPEK 525
++ V Q+ + N S+ ENI +GC + + I+ A + + + P
Sbjct: 67 ------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD----LEILPSG 116
Query: 526 YQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE-SEYLVQDAM--DSL 582
+T +GE+GV LSGGQKQRV++ARA+ N I L D+ SA+DA +++ ++ + +
Sbjct: 117 DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM 176
Query: 583 MKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVK 633
+K +T +++ H +S + D + V+S G+I E G+++ELL++ G + ++
Sbjct: 177 LKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 22/223 (9%)
Query: 411 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH 470
N L I LK+ G +AL+GPSG GKST+ I Y P GKI + + E+ +
Sbjct: 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD 74
Query: 471 LHRKISIVSQEPVLF-NCSIEENIAYGCD-GKASSADIEN----AAKMANAHDFISNFPE 524
R + +V Q L+ + ++ +NIA+ + KA +I+ AKM + ++ +P
Sbjct: 75 --RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP- 131
Query: 525 KYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK 584
+LSGGQ+QRVAIARAL+ P +LLLDE S LDA V+ + L K
Sbjct: 132 ----------WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK 181
Query: 585 --GRTVLVIAH-RLSTVQSADTVAVVSDGEIVESGTHEELLSK 624
G T + + H + + AD +AV+ +GEI++ GT +E+ K
Sbjct: 182 ELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 122/215 (56%), Gaps = 17/215 (7%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474
L ++LK+ SG ++GP+G GK+ LI F+ P G+ILL+G + ++S E
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK--HD 73
Query: 475 ISIVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMAN-AHDFISNFPEKYQTFVGE 532
I+ V Q LF + ++++N+ +G K I++ ++ + A D K + +
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKK----IKDPKRVLDTARDL------KIEHLLDR 123
Query: 533 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGR--TVLV 590
+ LSGG++QRVA+ARAL+ NP+ILLLDE SALD ++ ++ + L K TVL
Sbjct: 124 NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH 183
Query: 591 IAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624
I H + + AD +AVV DG++++ G EE+ K
Sbjct: 184 ITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 120/227 (52%), Gaps = 35/227 (15%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTI---ANLIERFYDPIKGKILLNGVPLVEISHEHL 471
L ++L + +G ++G SG GKST+ NL+ER P +G +L++G L +S L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSESEL 77
Query: 472 ---HRKISIVSQEPVLFNC-SIEENIAYGCDGKASSAD--------IENAAKMANAHDFI 519
R+I ++ Q L + ++ N+A + + D + + + + HD
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-- 135
Query: 520 SNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAM 579
++P LSGGQKQRVAIARAL NP++LL DEATSALD + + + +
Sbjct: 136 -SYPSN-----------LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183
Query: 580 DSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLS 623
+ + G T+L+I H + V+ D VAV+S+GE++E T E+ S
Sbjct: 184 KDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 26/223 (11%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474
++G++ ++ G + L+GPSG GK+TI LI P KG + + G + ++ + R
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK--RN 88
Query: 475 ISIVSQEPVLF-NCSIEENIAYGCDGKASSADIENAA-----KMANAHDFISNFPEKYQT 528
+ +V Q LF + ++ +N+++G K D +A + + + FP +
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHE--- 145
Query: 529 FVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDA----ESEYLVQDAMDSLMK 584
LSGGQ+QRVA+ARAL P++LL DE +A+D E V+ D +
Sbjct: 146 --------LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM-- 195
Query: 585 GRTVLVIAH-RLSTVQSADTVAVVSDGEIVESGTHEELLSKGG 626
G T + + H + ++ AD V V+ +G + + GT EE+ K G
Sbjct: 196 GVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 104/202 (51%), Gaps = 22/202 (10%)
Query: 430 LVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF-NCS 488
L+GP+G GKS LI P +G++ LNG + + E R I V Q+ LF + S
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER--RGIGFVPQDYALFPHLS 86
Query: 489 IEENIAYGCDGKASSADIENAAKMAN----AHDFISNFPEKYQTFVGERGVRLSGGQKQR 544
+ NIAYG +MA AH + + RLSGG++QR
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAH------------LLDRKPARLSGGERQR 134
Query: 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRL-STVQSA 601
VA+ARAL++ PR+LLLDE SA+D +++ ++ + + + + +L + H L A
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLA 194
Query: 602 DTVAVVSDGEIVESGTHEELLS 623
D VAV+ +G IVE G +EL S
Sbjct: 195 DEVAVMLNGRIVEKGKLKELFS 216
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 35/227 (15%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTI---ANLIERFYDPIKGKILLNGVPLVEISHEHL 471
L ++L + +G ++G SG GKST+ NL+ER P +G +L++G L +S L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSESEL 100
Query: 472 ---HRKISIVSQEPVLFNC-SIEENIAYGCDGKASSAD--------IENAAKMANAHDFI 519
R+I ++ Q L + ++ N+A + + D + + + + HD
Sbjct: 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-- 158
Query: 520 SNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAM 579
++P LSGGQKQRVAIARAL NP++LL D+ATSALD + + + +
Sbjct: 159 -SYPSN-----------LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206
Query: 580 DSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLS 623
+ + G T+L+I H + V+ D VAV+S+GE++E T E+ S
Sbjct: 207 KDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 35/227 (15%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTI---ANLIERFYDPIKGKILLNGVPLVEISHEHL 471
L ++L + +G ++G SG GKST+ NL+ER P +G +L++G L +S L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSESEL 100
Query: 472 ---HRKISIVSQEPVLFNC-SIEENIAYGCDGKASSAD--------IENAAKMANAHDFI 519
R+I + Q L + ++ N+A + + D + + + + HD
Sbjct: 101 TKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-- 158
Query: 520 SNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAM 579
++P LSGGQKQRVAIARAL NP++LL D+ATSALD + + + +
Sbjct: 159 -SYPSN-----------LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206
Query: 580 DSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLS 623
+ + G T+L+I H V+ D VAV+S+GE++E T E+ S
Sbjct: 207 KDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFS 253
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 117/215 (54%), Gaps = 24/215 (11%)
Query: 417 GITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476
G++ ++ G +AL+GPSG GK+T ++ Y P G+I + V + +I ++ R++
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--REVG 78
Query: 477 IVSQEPVLF-NCSIEENIAYGCDGKASSAD------IENAAKMANAHDFISNFPEKYQTF 529
+V Q L+ + ++ ENIA+ + S D +E A K+ I N ++ T
Sbjct: 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKL-----LIDNLLDRKPT- 132
Query: 530 VGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRT 587
+LSGGQ+QRVA+ARAL+ P++LL DE S LDA +++ + L + G T
Sbjct: 133 ------QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT 186
Query: 588 VLVIAH-RLSTVQSADTVAVVSDGEIVESGTHEEL 621
+ + H + + A +AV + G++V+ GT +E+
Sbjct: 187 SVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 39/227 (17%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILL-------NGVPLVEIS 467
L + + + +G + ++GPSG GK+T +I P G++ NG +V
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 468 HEHLHRKISIVSQEPVLF-NCSIEENIAYGCDGKASSAD-----IENAAKMANAHDFISN 521
RKI +V Q L+ N + ENIA+ S + +E AK+ + H +++
Sbjct: 81 D----RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH 136
Query: 522 FPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDS 581
FP + LSGGQ+QRVA+ARAL+ +P +LLLDE S LDA ++D+ +
Sbjct: 137 FPRE-----------LSGGQQQRVALARALVKDPSLLLLDEPFSNLDAR----MRDSARA 181
Query: 582 LMK------GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 621
L+K G T+LV++H + + + AD V V+ G++V+ G E+L
Sbjct: 182 LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 39/227 (17%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILL-------NGVPLVEIS 467
L + + + +G + ++GPSG GK+T +I P G++ NG +V
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 468 HEHLHRKISIVSQEPVLF-NCSIEENIAYGCDGKASSAD-----IENAAKMANAHDFISN 521
RKI +V Q L+ N + ENIA+ S + +E AK+ + H +++
Sbjct: 81 D----RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH 136
Query: 522 FPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDS 581
FP + LSG Q+QRVA+ARAL+ +P +LLLDE S LDA ++D+ +
Sbjct: 137 FPRE-----------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR----MRDSARA 181
Query: 582 LMK------GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 621
L+K G T+LV++H + + + AD V V+ G++V+ G E+L
Sbjct: 182 LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 24/223 (10%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPL--VEISHEHL 471
VLKGI + + G + ++GPSG GKST + D +G+I+++G+ L + + +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 472 HRKISIVSQEPVLF-NCSIEENIAYG-------CDGKASSADIENAAKMANAHDFISNFP 523
++ +V Q LF + ++ NI KA + +E K+ D +P
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVG-LKDKAHAYP 157
Query: 524 EKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM 583
+ LSGGQ QRVAIARAL M P+I+L DE TSALD E V M L
Sbjct: 158 DS-----------LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206
Query: 584 -KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 624
+G T++V+ H + + D V + G I+E G E+L +
Sbjct: 207 NEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 24/223 (10%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPL--VEISHEHL 471
VLKGI + + G + ++GPSG GKST + D +G+I+++G+ L + + +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 472 HRKISIVSQEPVLF-NCSIEENIAYG-------CDGKASSADIENAAKMANAHDFISNFP 523
++ +V Q LF + ++ NI KA + +E K+ D +P
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVG-LKDKAHAYP 136
Query: 524 EKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM 583
+ LSGGQ QRVAIARAL M P+I+L DE TSALD E V M L
Sbjct: 137 DS-----------LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 185
Query: 584 -KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 624
+G T++V+ H + + D V + G I+E G E+L +
Sbjct: 186 NEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 111/213 (52%), Gaps = 25/213 (11%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR- 473
LK + L + G ++++GPSG GKST+ N+I P +G++ ++ + ++ + L +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 474 ---KISIVSQE----PVLFNC-SIEENIAYGCDGKASSADIENAA----KMANAHDFISN 521
KI V Q+ P+L ++E + + G S + A KMA
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA-------- 132
Query: 522 FPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDS 581
E + F + +LSGGQ+QRVAIARAL NP I+L D+ T ALD+++ + +
Sbjct: 133 --ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 582 LMK--GRTVLVIAHRLSTVQSADTVAVVSDGEI 612
L + G+TV+V+ H ++ + + + + DGE+
Sbjct: 191 LNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 111/213 (52%), Gaps = 25/213 (11%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR- 473
LK + L + G ++++GPSG GKST+ N+I P +G++ ++ + ++ + L +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 474 ---KISIVSQE----PVLFNC-SIEENIAYGCDGKASSADIENAA----KMANAHDFISN 521
KI V Q+ P+L ++E + + G S + A KMA
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA-------- 132
Query: 522 FPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDS 581
E + F + +LSGGQ+QRVAIARAL NP I+L D+ T ALD+++ + +
Sbjct: 133 --ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKK 190
Query: 582 LMK--GRTVLVIAHRLSTVQSADTVAVVSDGEI 612
L + G+TV+V+ H ++ + + + + DGE+
Sbjct: 191 LNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 115/212 (54%), Gaps = 12/212 (5%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR 473
+LKGI+ ++ G L+GP+G GK+T +I P G + + G +VE HE + +
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE-VRK 88
Query: 474 KISIVSQEPVLF-NCSIEENIAYGCDGKA-SSADIENAAKMANAHDFISNFPEKYQTFVG 531
IS + +E + N E + + A SS++IE + A I+ EK +
Sbjct: 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATE---IAGLGEK----IK 141
Query: 532 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAM-DSLMKGRTVLV 590
+R S G +++ IARALM+NPR+ +LDE TS LD + V+ + + +G T+LV
Sbjct: 142 DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV 201
Query: 591 IAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 621
+H + V+ D +A++ +G IVE+GT EEL
Sbjct: 202 SSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 109/209 (52%), Gaps = 17/209 (8%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR- 473
LK + L + G +++ GPSG GKST N+I P +G++ ++ + ++ + L +
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 474 ---KISIVSQE----PVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEK 525
KI V Q+ P+L ++E + + G S + + A + + E
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEE-----RRKRALECLK-XAEL 134
Query: 526 YQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK- 584
+ F + +LSGGQ+QRVAIARAL NP I+L DE T ALD+++ + + L +
Sbjct: 135 EERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEE 194
Query: 585 -GRTVLVIAHRLSTVQSADTVAVVSDGEI 612
G+TV+V+ H ++ + + + + DGE+
Sbjct: 195 DGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 117/230 (50%), Gaps = 23/230 (10%)
Query: 411 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH 470
N + + L + G + L+GPSG GK+T +I +P +G+I + + +
Sbjct: 24 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD 83
Query: 471 LHRKISIVSQEPVLF-NCSIEENIAYGCDGKASSAD-----IENAAKMANAHDFISNFPE 524
R IS+V Q ++ + ++ ENIA+ K D + AA++ + ++ +P
Sbjct: 84 --RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP- 140
Query: 525 KYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSL-- 582
+LSGGQ+QRVA+ARA+++ P +LL+DE S LDA+ ++ + L
Sbjct: 141 ----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 190
Query: 583 -MKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL-LSKGGVYTA 630
+K T+ V ++ + D +AV++ G++++ G+ E+ L V+ A
Sbjct: 191 KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 240
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 117/230 (50%), Gaps = 23/230 (10%)
Query: 411 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH 470
N + + L + G + L+GPSG GK+T +I +P +G+I + + +
Sbjct: 23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD 82
Query: 471 LHRKISIVSQEPVLF-NCSIEENIAYGCDGKASSAD-----IENAAKMANAHDFISNFPE 524
R IS+V Q ++ + ++ ENIA+ K D + AA++ + ++ +P
Sbjct: 83 --RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP- 139
Query: 525 KYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSL-- 582
+LSGGQ+QRVA+ARA+++ P +LL+DE S LDA+ ++ + L
Sbjct: 140 ----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 189
Query: 583 -MKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL-LSKGGVYTA 630
+K T+ V ++ + D +AV++ G++++ G+ E+ L V+ A
Sbjct: 190 KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 239
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 16/209 (7%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR 473
VLK I K+ G +A+ G +G GK+++ +I +P +GKI +G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 474 KISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGER 533
+IS SQ + +I+ENI +G + K + IS F EK +GE
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 127
Query: 534 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTVLVIA 592
G+ LSGGQ+ R+++ARA+ + + LLD LD +E + + + LM +T +++
Sbjct: 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 187
Query: 593 HRLSTVQSADTVAVVSDGEIVESGTHEEL 621
++ ++ AD + ++ +G GT EL
Sbjct: 188 SKMEHLKKADKILILHEGSSYFYGTFSEL 216
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 16/209 (7%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR 473
VLK I K+ G +A+ G +G GK+++ +I +P +GKI +G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 81
Query: 474 KISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGER 533
+IS SQ + +I+ENI +G + K + IS F EK +GE
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 139
Query: 534 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTVLVIA 592
G+ LSGGQ+ R+++ARA+ + + LLD LD +E + + + LM +T +++
Sbjct: 140 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 199
Query: 593 HRLSTVQSADTVAVVSDGEIVESGTHEEL 621
++ ++ AD + ++ +G GT EL
Sbjct: 200 SKMEHLKKADKILILHEGSSYFYGTFSEL 228
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 16/234 (6%)
Query: 391 GDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD 450
GD+ + ++V F++ + VLK I L + G +A+ G +G GK+++ LI +
Sbjct: 30 GDRKHXSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 89
Query: 451 PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAA 510
+G I +G ++S SQ + +I+ENI +G ++
Sbjct: 90 ASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFGV--SYDEYRYKSVV 134
Query: 511 KMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 570
K I+ F E+ T +GE GV LSGGQ+ R+++ARA+ + + LLD LD
Sbjct: 135 KACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 194
Query: 571 SEYLV-QDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 623
+E V + + LM +T +++ ++ ++ AD + ++ G GT EL S
Sbjct: 195 TEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 16/234 (6%)
Query: 391 GDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD 450
GD+ + ++V F++ + VLK I L + G +A+ G +G GK+++ LI +
Sbjct: 30 GDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 89
Query: 451 PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAA 510
+G I +G ++S SQ + +I+ENI +G ++
Sbjct: 90 ASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFGV--SYDEYRYKSVV 134
Query: 511 KMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 570
K I+ F E+ T +GE GV LSGGQ+ R+++ARA+ + + LLD LD
Sbjct: 135 KACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 194
Query: 571 SEYLV-QDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 623
+E V + + LM +T +++ ++ ++ AD + ++ G GT EL S
Sbjct: 195 TEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 109/226 (48%), Gaps = 23/226 (10%)
Query: 400 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLN 459
D ++F+ S VLK I K+ G +A+ G +G GK+++ +I +P +GKI +
Sbjct: 39 DSLFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 98
Query: 460 GVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSAD---IENAAKMANAH 516
G +IS SQ + +I+ENI S D + K
Sbjct: 99 G-------------RISFCSQNSWIMPGTIKENII------GVSYDEYRYRSVIKACQLE 139
Query: 517 DFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEY-LV 575
+ IS F EK +GE G+ LSGGQ+ R+++ARA+ + + LLD LD +E +
Sbjct: 140 EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIF 199
Query: 576 QDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 621
+ + LM +T +++ ++ ++ AD + ++ +G GT EL
Sbjct: 200 ESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 16/209 (7%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR 473
VLK I K+ G +A+ G +G GK+++ +I +P +GKI +G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 474 KISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGER 533
+IS SQ + +I+ENI G + K + IS F EK +GE
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 534 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTVLVIA 592
G+ LSGGQ+ R+++ARA+ + + LLD LD +E + + + LM +T +++
Sbjct: 158 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 217
Query: 593 HRLSTVQSADTVAVVSDGEIVESGTHEEL 621
++ ++ AD + ++ +G GT EL
Sbjct: 218 SKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 112/234 (47%), Gaps = 16/234 (6%)
Query: 391 GDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD 450
GD+ + ++V F++ + VLK I L + G +A+ G +G GK+++ LI +
Sbjct: 30 GDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 89
Query: 451 PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAA 510
+G I +G ++S SQ + +I+ENI G ++
Sbjct: 90 ASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIRGV--SYDEYRYKSVV 134
Query: 511 KMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 570
K I+ F E+ T +GE GV LSGGQ+ R+++ARA+ + + LLD LD
Sbjct: 135 KACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 194
Query: 571 SEYLV-QDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 623
+E V + + LM +T +++ ++ ++ AD + ++ G GT EL S
Sbjct: 195 TEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 112/234 (47%), Gaps = 16/234 (6%)
Query: 391 GDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD 450
GD+ + ++V F++ + VLK I L + G +A+ G +G GK+++ LI +
Sbjct: 30 GDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 89
Query: 451 PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAA 510
+G I +G ++S SQ + +I+ENI G ++
Sbjct: 90 ASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIISGV--SYDEYRYKSVV 134
Query: 511 KMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 570
K I+ F E+ T +GE GV LSGGQ+ R+++ARA+ + + LLD LD
Sbjct: 135 KACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 194
Query: 571 SEYLV-QDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 623
+E V + + LM +T +++ ++ ++ AD + ++ G GT EL S
Sbjct: 195 TEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 23/212 (10%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR 473
VLK I K+ G +A+ G +G GK+++ +I +P +GKI +G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 474 KISIVSQEPVLFNCSIEENIAYGCDGKASSAD---IENAAKMANAHDFISNFPEKYQTFV 530
+IS SQ + +I+ENI S D + K + IS F EK +
Sbjct: 100 RISFCSQNSWIMPGTIKENII------GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL 153
Query: 531 GERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTVL 589
GE G+ LSGGQ+ R+++ARA+ + + LLD LD +E + + + LM +T +
Sbjct: 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 590 VIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 621
++ ++ ++ AD + ++ +G GT EL
Sbjct: 214 LVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 23/212 (10%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR 473
VLK I K+ G +A+ G +G GK+++ +I +P +GKI +G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 474 KISIVSQEPVLFNCSIEENIAYGCDGKASSAD---IENAAKMANAHDFISNFPEKYQTFV 530
+IS SQ + +I+ENI S D + K + IS F EK +
Sbjct: 70 RISFCSQFSWIMPGTIKENII------GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL 123
Query: 531 GERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTVL 589
GE G+ LSGGQ+ R+++ARA+ + + LLD LD +E + + + LM +T +
Sbjct: 124 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 183
Query: 590 VIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 621
++ ++ ++ AD + ++ +G GT EL
Sbjct: 184 LVTSKMEHLKKADKILILHEGSSYFYGTFSEL 215
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 16/209 (7%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR 473
VLK I K+ G +A+ G +G GK+++ +I +P +GKI +G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 474 KISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGER 533
+IS SQ + +I+ENI +G + K + IS F EK +GE
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 534 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTVLVIA 592
G+ LS GQ+ ++++ARA+ + + LLD LD +E + + + LM +T +++
Sbjct: 158 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 217
Query: 593 HRLSTVQSADTVAVVSDGEIVESGTHEEL 621
++ ++ AD + ++ +G GT EL
Sbjct: 218 SKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 111/233 (47%), Gaps = 18/233 (7%)
Query: 393 QDGEVELDDVW-----------FAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTI 441
++ V+ DD+W A + + +L+ I+ + G ++ L+G +G GKST+
Sbjct: 4 ENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTL 63
Query: 442 ANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKA 501
+ R + +G+I ++GV I+ E + ++ Q+ +F+ + +N+ D A
Sbjct: 64 LSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL----DPNA 118
Query: 502 SSAD--IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILL 559
+ +D I A I FP K + + G LS G KQ + +AR+++ +ILL
Sbjct: 119 AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL 178
Query: 560 LDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEI 612
LDE ++ LD + +++ + TV++ R+ + D V+ + ++
Sbjct: 179 LDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKV 231
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 113/237 (47%), Gaps = 23/237 (9%)
Query: 391 GDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD 450
GD+ + ++V F++ + VLK I L + G +A+ G +G GK+++ LI +
Sbjct: 30 GDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 89
Query: 451 PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSAD---IE 507
+G I +G ++S SQ + +I+ENI S D +
Sbjct: 90 ASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENII------GVSYDEYRYK 130
Query: 508 NAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSAL 567
+ K I+ F E+ T +GE GV LSGGQ+ R+++ARA+ + + LLD L
Sbjct: 131 SVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYL 190
Query: 568 DAESEYLV-QDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 623
D +E V + + LM +T +++ ++ ++ AD + ++ G GT EL S
Sbjct: 191 DVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 247
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 17/219 (7%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE---HL 471
LKGI + + G A++G +G GKST+ P G+IL + P ++ S + L
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP-IDYSRKGIMKL 82
Query: 472 HRKISIVSQEP--VLFNCSIEENIAYGC-DGKASSADIENAAKMANAHDFISNFPEKYQT 528
I IV Q+P LF+ S+ +++++G + K +I A I + +K
Sbjct: 83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTH 142
Query: 529 FVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GR 586
LS GQK+RVAIA L+M P++L+LDE T+ LD + + + K G
Sbjct: 143 C-------LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195
Query: 587 TVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624
T+++ H + V D V V+ +G ++ G +E+ ++
Sbjct: 196 TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 20/221 (9%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR 473
++ ++L + SG +A++GP+G GKST+ L+ + P G+ L G L + L R
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 474 KISIVSQEPVL-FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGE 532
+++ Q L F S+ E I G S D + ++ D ++ + +
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA---------LAQ 136
Query: 533 RGVR-LSGGQKQRVAIARALMM------NPRILLLDEATSALDAESEYLVQDAMDSLMKG 585
R R LSGG++QRV +AR L PR L LDE TSALD + + L +
Sbjct: 137 RDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ 196
Query: 586 R--TVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 623
V + H L+ AD + +++ G++V GT EE+L+
Sbjct: 197 EPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 28/237 (11%)
Query: 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 456
+EL+ V F Y VLK + + +G +VG +G GK+T+ ++ G+I
Sbjct: 12 IELNSVSFRYNG---DYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 457 LLNGVPLVEISHEHLHRK-ISIVSQEPV--LFNCSIEENIAY-----GCDGKASSADIEN 508
L+G P + L RK + V Q P + ++EE++A+ G D I+
Sbjct: 68 FLDGSP----ADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKK 123
Query: 509 AAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALD 568
++ + P + LSGGQKQR+AIA L + R L LDE S LD
Sbjct: 124 VLELVGLSGLAAADP-----------LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLD 172
Query: 569 AESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 624
S+ + ++SL +G+ ++++ H L + D + +S+G I G+ EE + +
Sbjct: 173 PPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVER 229
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 122/242 (50%), Gaps = 29/242 (11%)
Query: 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 456
V L DVW + ++ ++L++ G + L+GPSG GK+T +I +P +G+I
Sbjct: 4 VRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 457 LLNGVPLVEISHEHL-----HRKISIVSQEPVLF-NCSIEENIAYGCD-GKASSADIEN- 508
+ G LV + + R I++V Q L+ + ++ +NIA+ K +I+
Sbjct: 61 YI-GDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
Query: 509 ---AAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS 565
A++ + ++ P + LSGGQ+QRVA+ RA++ P++ L+DE S
Sbjct: 120 VREVAELLGLTELLNRKPRE-----------LSGGQRQRVALGRAIVRKPQVFLMDEPLS 168
Query: 566 ALDAESEYLVQDAMDSLMK--GRTVLVIAH-RLSTVQSADTVAVVSDGEIVESGTHEELL 622
LDA+ ++ + L + G T + + H ++ + D +AV++ G + + G+ +E+
Sbjct: 169 NLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228
Query: 623 SK 624
K
Sbjct: 229 DK 230
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 120/229 (52%), Gaps = 36/229 (15%)
Query: 411 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG---------V 461
N VL I+L L G + ++G SG GK+T+ + F P G+I L+G +
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 462 PLVEISHEHLHRKISIVSQEPVLF-NCSIEENIAYGC-DGKASSAD----IENAAKMANA 515
P+ E R++ + QE VLF + ++ NIAYG +GK +A IE ++
Sbjct: 76 PVRE-------RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGI 128
Query: 516 HDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLV 575
+ +P + LSGGQ+QR A+ARAL +P ++LLDE SALD + +
Sbjct: 129 SELAGRYPHE-----------LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI 177
Query: 576 QDAMDSLMK--GRTVLVIAH-RLSTVQSADTVAVVSDGEIVESGTHEEL 621
++ M + ++ G++ + ++H R +Q AD +AV+ G I+++ + EL
Sbjct: 178 REDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 103/220 (46%), Gaps = 26/220 (11%)
Query: 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY-----DPIKGKILLNGVPLVEIS 467
+V K I L + G + VGPSG GKST+ +I D G+ +N P E
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE-- 74
Query: 468 HEHLHRKISIVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKY 526
R + +V Q L+ + S+ EN+++G + ++ N ++ E
Sbjct: 75 -----RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR--------VNQVAEVL 121
Query: 527 QT--FVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK 584
Q + + LSGGQ+QRVAI R L+ P + LLDE S LDA ++ + L K
Sbjct: 122 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181
Query: 585 --GRTVLVIAH-RLSTVQSADTVAVVSDGEIVESGTHEEL 621
GRT++ + H ++ + AD + V+ G + + G EL
Sbjct: 182 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 103/220 (46%), Gaps = 26/220 (11%)
Query: 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY-----DPIKGKILLNGVPLVEIS 467
+V K I L + G + VGPSG GKST+ +I D G+ +N P E
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE-- 74
Query: 468 HEHLHRKISIVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKY 526
R + +V Q L+ + S+ EN+++G + ++ N ++ E
Sbjct: 75 -----RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR--------VNQVAEVL 121
Query: 527 QT--FVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK 584
Q + + LSGGQ+QRVAI R L+ P + LLDE S LDA ++ + L K
Sbjct: 122 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181
Query: 585 --GRTVLVIAH-RLSTVQSADTVAVVSDGEIVESGTHEEL 621
GRT++ + H ++ + AD + V+ G + + G EL
Sbjct: 182 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 116/242 (47%), Gaps = 27/242 (11%)
Query: 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGK 455
EV+L ++W + + +K ++L++ G + L+GPSG GK+T I +P +G+
Sbjct: 6 EVKLINIWKRFG---DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQ 62
Query: 456 ILLN----GVPLVEISHEHLHRKISIVSQEPVLF-NCSIEENIAYGCD-GKASSADIEN- 508
I + P + R ++ V Q L+ + ++ +NIA+ K +I+
Sbjct: 63 IYIEDNLVADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKR 122
Query: 509 ---AAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS 565
A+ + ++ P + LSGGQ+QRVA+ RA++ P++ L DE S
Sbjct: 123 VREVAEXLGLTELLNRKPRE-----------LSGGQRQRVALGRAIIRRPKVFLXDEPLS 171
Query: 566 ALDAESEYLVQDAMDSLMK--GRTVLVIAH-RLSTVQSADTVAVVSDGEIVESGTHEELL 622
LDA+ + + L + G T + + H ++ D +AV + GE+ + GT +E+
Sbjct: 172 NLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVY 231
Query: 623 SK 624
K
Sbjct: 232 YK 233
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 102/212 (48%), Gaps = 23/212 (10%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR 473
VLK I K+ G +A+ G +G GK+++ +I +P +GKI +G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 474 KISIVSQEPVLFNCSIEENIAYGCDGKASSAD---IENAAKMANAHDFISNFPEKYQTFV 530
+IS SQ + +I+ENI S D + K + IS F EK +
Sbjct: 100 RISFCSQFSWIMPGTIKENII------GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL 153
Query: 531 GERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTVL 589
GE G+ LS GQ+ ++++ARA+ + + LLD LD +E + + + LM +T +
Sbjct: 154 GEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 590 VIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 621
++ ++ ++ AD + ++ +G GT EL
Sbjct: 214 LVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 101/214 (47%), Gaps = 12/214 (5%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474
L+ ++L + G + + G +G GKST+ ++ +P G +L +G + R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE---RKKGYEIRRN 79
Query: 475 ISIVSQEP--VLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGE 532
I I Q P F + + +A+ K D + + A +F+ + +F
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAV--KNFYPDRDPVPLVKKAMEFVGL---DFDSFKDR 134
Query: 533 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTVLVI 591
LSGG+K+RVAIA ++ P IL+LDE LD E + L++ G+TV++I
Sbjct: 135 VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILI 194
Query: 592 AHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 624
+H + TV D V V+ G+ V GT E L K
Sbjct: 195 SHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 101/214 (47%), Gaps = 12/214 (5%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474
L+ ++L + G + + G +G GKST+ ++ +P G +L +G + R
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE---RKKGYEIRRN 81
Query: 475 ISIVSQEP--VLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGE 532
I I Q P F + + +A+ K D + + A +F+ + +F
Sbjct: 82 IGIAFQYPEDQFFAERVFDEVAFAV--KNFYPDRDPVPLVKKAMEFVGL---DFDSFKDR 136
Query: 533 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEY-LVQDAMDSLMKGRTVLVI 591
LSGG+K+RVAIA ++ P IL+LDE LD E + L++ G+TV++I
Sbjct: 137 VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILI 196
Query: 592 AHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 624
+H + TV D V V+ G+ V GT E L K
Sbjct: 197 SHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 103/220 (46%), Gaps = 26/220 (11%)
Query: 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY-----DPIKGKILLNGVPLVEIS 467
+V K I L + G + VGPSG GKST+ +I D G+ +N P E
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE-- 74
Query: 468 HEHLHRKISIVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKY 526
R + +V Q L+ + S+ EN+++G + ++ N ++ E
Sbjct: 75 -----RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR--------VNQVAEVL 121
Query: 527 QT--FVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK 584
Q + + LSGGQ+QRVAI R L+ P + LLD+ S LDA ++ + L K
Sbjct: 122 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHK 181
Query: 585 --GRTVLVIAH-RLSTVQSADTVAVVSDGEIVESGTHEEL 621
GRT++ + H ++ + AD + V+ G + + G EL
Sbjct: 182 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 122/243 (50%), Gaps = 20/243 (8%)
Query: 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLI--ERFYDPIK 453
++E+ D+W S +LKG+ L + G AL+GP+G GKST+ ++ + Y +
Sbjct: 3 QLEIRDLW---ASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVER 59
Query: 454 GKILLNGVPLVEISHEHLHRK-ISIVSQEPV-LFNCSIEENIAYGCDGKASS--ADIENA 509
G+ILL+G ++E+S + RK + + Q PV + +I + K E
Sbjct: 60 GEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW 119
Query: 510 AKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDA 569
K+ A + + ++ E Y + G SGG+K+R I + L++ P +LDE S LD
Sbjct: 120 TKVKKALELL-DWDESYLSRYLNEG--FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDI 176
Query: 570 ESEYLVQDAMDSLMKGRT--VLVIAH--RLSTVQSADTVAVVSDGEIVESGTHE---ELL 622
++ +V +++ M+G LVI H R+ D V V+ DG +V +G E EL
Sbjct: 177 DALKVVARGVNA-MRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELE 235
Query: 623 SKG 625
+KG
Sbjct: 236 AKG 238
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 42/228 (18%)
Query: 417 GITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP----IKGKILLNGVPLVEISHEHLH 472
GI+L +L S A+VG S GKSTI + + P + G++L G L+ + E L
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 473 R----KISIVSQ------EPVL-----FNCSIEENIAYGCDGKASSADIENAAKMA---- 513
+ +I++V Q P + F ++E A+G S IE A++
Sbjct: 86 KIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVE---AHGVRWSHSEL-IEKASEKLRMVR 141
Query: 514 -NAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESE 572
N ++++P ++LSGG KQRV IA AL+++P +L+LDE TSALD ++
Sbjct: 142 LNPEAVLNSYP-----------LQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQ 190
Query: 573 -YLVQDAMDSLMKGR-TVLVIAHRLST-VQSADTVAVVSDGEIVESGT 617
+++Q + + T++ + H ++ + AD VAV+ G +VE +
Sbjct: 191 AHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNS 238
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 19/221 (8%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HR 473
L G+++ + G ++GP+G GKST+ N+I F +G++ + L H
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 474 KISIVSQEP-VLFNCSIEENIAYG--CDGKAS------SADIENAAKMANAHDFISNFPE 524
I Q P L ++ EN+ G C G++ I +M I F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL- 141
Query: 525 KYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM- 583
K + LSGGQ + V I RALM NP+++++DE + + + L D + ++
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV---APGLAHDIFNHVLE 198
Query: 584 ---KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEE 620
KG T L+I HRL V D + V+ +G+I+ G EE
Sbjct: 199 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 16/223 (7%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474
+KGI LK+ G + L+G +G GK+T + I KGKI+ NG + ++R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 475 -ISIVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGE 532
I++V + +F ++ EN+ G + I+ + S FP + + + +
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKR-----DLEWIFSLFP-RLKERLKQ 135
Query: 533 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK----GRTV 588
G LSGG++Q +AI RAL P++L DE + L + LV + + + K G T+
Sbjct: 136 LGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGL---APILVSEVFEVIQKINQEGTTI 192
Query: 589 LVIAHR-LSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTA 630
L++ L ++ A V+ G+IV G ELL V A
Sbjct: 193 LLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEXVRKA 235
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 99/213 (46%), Gaps = 22/213 (10%)
Query: 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL 471
+ +LKGI+L + G ++++G SG GKST+ ++ P +GK+ L G + + + L
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 472 ----HRKISIVSQEPVLF-NCSIEENI-----AYGCDGKASSADIENAAKMANAHDFISN 521
+RK+ V Q L + EN+ G K + E D +S
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSR 136
Query: 522 FPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDS 581
P Y+ LSGG++QRVAIARAL P +L DE T LD+ + V D
Sbjct: 137 KP--YE---------LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLK 185
Query: 582 LMKGRT-VLVIAHRLSTVQSADTVAVVSDGEIV 613
+ +G T ++++ H + + DG++V
Sbjct: 186 INEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 19/221 (8%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HR 473
L G+++ + G ++GP+G GKST+ N+I F +G++ + L H
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 474 KISIVSQEP-VLFNCSIEENIAYGCDGKASSA--------DIENAAKMANAHDFISNFPE 524
I Q P L ++ EN+ G S I +M I F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL- 141
Query: 525 KYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM- 583
K + LSGGQ + V I RALM NP+++++DE + + + L D + ++
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV---APGLAHDIFNHVLE 198
Query: 584 ---KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEE 620
KG T L+I HRL V D + V+ +G+I+ G EE
Sbjct: 199 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 118/229 (51%), Gaps = 24/229 (10%)
Query: 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPL-------- 463
H VLKG++L+ +G I+++G SG GKST I P +G I++NG +
Sbjct: 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 78
Query: 464 -VEISHEH----LHRKISIVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHD 517
++++ ++ L ++++V Q L+ + ++ EN+ + + A
Sbjct: 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV---MEAPIQVLGLSKHDARERALK 135
Query: 518 FISN--FPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLV 575
+++ E+ Q G+ V LSGGQ+QRV+IARAL M P +LL DE TSALD E V
Sbjct: 136 YLAKVGIDERAQ---GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 192
Query: 576 QDAMDSLM-KGRTVLVIAHRLSTVQSADT-VAVVSDGEIVESGTHEELL 622
M L +G+T++V+ H + + + V + G+I E G E++
Sbjct: 193 LRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 29/205 (14%)
Query: 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGK 455
++E+ D+ Y +P VL+ IT+ + G+ + GP+G GK+T+ I + P+KG+
Sbjct: 10 KLEIRDLSVGY-DKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 456 ILLNGVPLVEISHEHLHRKISIVSQEPVL-FNCSIEENIA-----YGCDGKASSADIENA 509
I+ NGVP+ ++ KI + +E ++ S+E+ + YG K + +I +A
Sbjct: 66 IIYNGVPITKVKG-----KIFFLPEEIIVPRKISVEDYLKAVASLYGV--KVNKNEIMDA 118
Query: 510 AKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDA 569
+ D E LS G +RV +A L++N I +LD+ A+D
Sbjct: 119 LESVEVLDLKKKLGE------------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 570 ESEYLVQDAMDSLMKGRTVLVIAHR 594
+S++ V ++ ++K + +++I+ R
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISSR 191
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 27/225 (12%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HR 473
L G+++ + G ++GP+G GKST+ N+I F +G++ + L H
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 474 KISIVSQEP-VLFNCSIEENIAYGCDGKASSA------------DIENAAKMANAHDFIS 520
I Q P L ++ EN+ G S + E K +F+
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL- 141
Query: 521 NFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMD 580
K + LSGGQ + V I RALM NP+++++D+ + + + L D +
Sbjct: 142 ----KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGV---APGLAHDIFN 194
Query: 581 SLM----KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEE 620
++ KG T L+I HRL V D + V+ +G+I+ G EE
Sbjct: 195 HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 32/224 (14%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGKSTI-ANLIER-FYDPIKGKILLNGVPLVEISHE-H 470
+L+G++L + G A++GP+G GKST+ A L R Y+ G + G L+ +S E
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 471 LHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFV 530
I + Q PV G + NA + + + F +Q +
Sbjct: 95 AGEGIFMAFQYPVEIP---------GVSNQFFLQTALNAVRSYRGQETLDRF--DFQDLM 143
Query: 531 GER---------------GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLV 575
E+ V SGG+K+R I + ++ P + +LDE+ S LD ++ +V
Sbjct: 144 EEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV 203
Query: 576 QDAMDSLMKG-RTVLVIAH--RLSTVQSADTVAVVSDGEIVESG 616
D ++SL G R+ +++ H R+ D V V+ G IV+SG
Sbjct: 204 ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 32/224 (14%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLI--ERFYDPIKGKILLNGVPLVEISHE-H 470
+L+G++L + G A++GP+G GKST++ + Y+ G + G L+ +S E
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 471 LHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFV 530
I + Q PV G + NA + + + F +Q +
Sbjct: 76 AGEGIFMAFQYPVEIP---------GVSNQFFLQTALNAVRSYRGQETLDRF--DFQDLM 124
Query: 531 GER---------------GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLV 575
E+ V SGG+K+R I + ++ P + +LDE+ S LD ++ +V
Sbjct: 125 EEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV 184
Query: 576 QDAMDSLMKG-RTVLVIAH--RLSTVQSADTVAVVSDGEIVESG 616
D ++SL G R+ +++ H R+ D V V+ G IV+SG
Sbjct: 185 ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 33/219 (15%)
Query: 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 456
+ ++++ F Y + + + + + L G +A++G +G GKST+ +L+ + PI+GKI
Sbjct: 5 LSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 457 LLNGVPLVEISHEHLHRKISIVSQ---EPVLFNCSIEENIAYGCDGKASSADIENAAKMA 513
+++ I V Q P F S+ + + G S I AK
Sbjct: 63 -------------EVYQSIGFVPQFFSSP--FAYSVLDIVLMG-----RSTHINTFAK-P 101
Query: 514 NAHDF---ISNFPEKYQTFVGERG-VRLSGGQKQRVAIARALMMNPRILLLDEATSALDA 569
+HD+ + T + +R LSGGQ+Q + IARA+ +++LLDE TSALD
Sbjct: 102 KSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDL 161
Query: 570 ESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVS 608
++ +V + L + + + V+ +T Q VA+ +
Sbjct: 162 ANQDIVLSLLIDLAQSQNMTVV---FTTHQPNQVVAIAN 197
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 17/222 (7%)
Query: 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG-VP-LVEISHEHL 471
+LK I+ ++ G K L G +G GK+T+ N++ + G + L G P V S E +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 472 HRKISIVSQEPVLFNCSIEENIAYGCDGKASS----ADIENAAKMANAHDFIS--NFPEK 525
+ I VS + E I G S DI++ + AH + K
Sbjct: 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR-NEAHQLLKLVGXSAK 154
Query: 526 YQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALD---AESEYLVQDAMDSL 582
Q ++G LS G+KQRV IARAL P++L+LDE + LD ES + D++
Sbjct: 155 AQQYIG----YLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDS 210
Query: 583 MKGRTVLVIAHRLSTVQSA-DTVAVVSDGEIVESGTHEELLS 623
+ + H + + + + ++ DG+ ++ G E++L+
Sbjct: 211 YPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 92/219 (42%), Gaps = 47/219 (21%)
Query: 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQ 480
++ G I +VGP+G GK+T ++ +P +GK+ + V+
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD----------------LTVAY 421
Query: 481 EPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFV---------G 531
+P E + Y K S+ + SNF Y+T +
Sbjct: 422 KPQYIKAEYEGTV-YELLSKIDSSKLN------------SNF---YKTELLKPLGIIDLY 465
Query: 532 ERGVR-LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKG--RTV 588
+R V LSGG+ QRVAIA L+ + I LLDE ++ LD E V A+ LM+ +T
Sbjct: 466 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525
Query: 589 LVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGV 627
LV+ H + + +V +G E G H L G+
Sbjct: 526 LVVEHDVLMIDYVSDRLIVFEG---EPGRHGRALPPMGM 561
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 536 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHR 594
+LSGG+ QRVAIA AL+ DE +S LD V + L +G+ VLV+ H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 595 LSTVQSADTVAVVSDGE 611
L+ + V V GE
Sbjct: 288 LAVLDYLSDVIHVVYGE 304
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 92/219 (42%), Gaps = 47/219 (21%)
Query: 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQ 480
++ G I +VGP+G GK+T ++ +P +GK+ + V+
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD----------------LTVAY 407
Query: 481 EPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFV---------G 531
+P E + Y K S+ + SNF Y+T +
Sbjct: 408 KPQYIKAEYEGTV-YELLSKIDSSKLN------------SNF---YKTELLKPLGIIDLY 451
Query: 532 ERGVR-LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKG--RTV 588
+R V LSGG+ QRVAIA L+ + I LLDE ++ LD E V A+ LM+ +T
Sbjct: 452 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 511
Query: 589 LVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGV 627
LV+ H + + +V +G E G H L G+
Sbjct: 512 LVVEHDVLMIDYVSDRLIVFEG---EPGRHGRALPPMGM 547
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 536 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHR 594
+LSGG+ QRVAIA AL+ DE +S LD V + L +G+ VLV+ H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 595 LSTVQSADTVAVVSDGE 611
L+ + V V GE
Sbjct: 274 LAVLDYLSDVIHVVYGE 290
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 28/213 (13%)
Query: 424 SGSKIALVGPSGGGKSTIANLIERFYDPI--KGKILLNGVPLVEISHEH--LHRKISIVS 479
+G + LVGP+G GKST L+ R KG I G PL S LHR
Sbjct: 25 AGEILHLVGPNGAGKST---LLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 480 QEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 539
Q P F + + K + + + A D + G +LSG
Sbjct: 82 QTPP-FATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-----------GRSTNQLSG 129
Query: 540 GQKQRVAIARALMM-----NP--RILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVI 591
G+ QRV +A ++ NP ++LLLD+ ++LD + + + +L +G +++
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMS 189
Query: 592 AHRLS-TVQSADTVAVVSDGEIVESGTHEELLS 623
+H L+ T++ A ++ G+++ SG EE+L+
Sbjct: 190 SHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 28/213 (13%)
Query: 424 SGSKIALVGPSGGGKSTIANLIERFYDPI--KGKILLNGVPLVEISHEH--LHRKISIVS 479
+G + LVGP+G GKST L+ R KG I G PL S LHR
Sbjct: 25 AGEILHLVGPNGAGKST---LLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 480 QEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 539
Q P F + + K + + + A D + G +LSG
Sbjct: 82 QTPP-FATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-----------GRSTNQLSG 129
Query: 540 GQKQRVAIARALMM-----NP--RILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVI 591
G+ QRV +A ++ NP ++LLLD+ +LD + + + +L +G +++
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMS 189
Query: 592 AHRLS-TVQSADTVAVVSDGEIVESGTHEELLS 623
+H L+ T++ A ++ G+++ SG EE+L+
Sbjct: 190 SHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 22/132 (16%)
Query: 512 MANAHDFISNFPE---KYQTF---------VGERGVRLSGGQKQRVAIARALMM--NPRI 557
+ +A DF ++ P+ K +T +G+ LSGG+ QRV +A L N R
Sbjct: 809 VEDALDFFASIPKIKRKLETLYDVGLGYXKLGQPATTLSGGEAQRVKLAAELHRRSNGRT 868
Query: 558 L-LLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSD------ 609
L +LDE T+ L + + D + L+ G TVLVI H L +++AD + +
Sbjct: 869 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRG 928
Query: 610 GEIVESGTHEEL 621
G+IV GT EE+
Sbjct: 929 GQIVAVGTPEEV 940
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 518 FISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL--MMNPRILLLDEATSALDA-ESEYL 574
F+ N Y T G LSGG+ QR+ +A + + + +LDE + L +++ L
Sbjct: 487 FLQNVGLDYLTLSRSAGT-LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRL 545
Query: 575 VQDAMDSLMKGRTVLVIAHRLSTVQSADTV------AVVSDGEIVESGTHEEL 621
+ G T++V+ H T +AD + A + GE+V +GT EE+
Sbjct: 546 IATLKSXRDLGNTLIVVEHDEDTXLAADYLIDIGPGAGIHGGEVVAAGTPEEV 598
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTIAN 443
LK +++K+ G+ +A+ G SG GKST+ N
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 668
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 22/130 (16%)
Query: 514 NAHDFISNFPE---KYQTF---------VGERGVRLSGGQKQRVAIARALMM--NPRIL- 558
+A DF ++ P+ K +T +G+ LSGG+ QRV +A L N R L
Sbjct: 509 DALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLY 568
Query: 559 LLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSD------GE 611
+LDE T+ L + + D + L+ G TVLVI H L +++AD + + G+
Sbjct: 569 ILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQ 628
Query: 612 IVESGTHEEL 621
IV GT EE+
Sbjct: 629 IVAVGTPEEV 638
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 518 FISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL--MMNPRILLLDEATSALDAESEYLV 575
F+ N Y T G LSGG+ QR+ +A + + + +LDE + L +
Sbjct: 185 FLQNVGLDYLTLSRSAGT-LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRL 243
Query: 576 QDAMDSLMK-GRTVLVIAHRLSTVQSADTV------AVVSDGEIVESGTHEELLS 623
+ S+ G T++V+ H T+ +AD + A + GE+V +GT EE+++
Sbjct: 244 IATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 400 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIAN 443
D W H LK +++K+ G+ +A+ G SG GKST+ N
Sbjct: 324 DGRWLEVVGAREHN-LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 366
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 22/130 (16%)
Query: 514 NAHDFISNFPE---KYQTF---------VGERGVRLSGGQKQRVAIARALMM--NPRIL- 558
+A DF ++ P+ K +T +G+ LSGG+ QRV +A L N R L
Sbjct: 811 DALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLY 870
Query: 559 LLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSD------GE 611
+LDE T+ L + + D + L+ G TVLVI H L +++AD + + G+
Sbjct: 871 ILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQ 930
Query: 612 IVESGTHEEL 621
IV GT EE+
Sbjct: 931 IVAVGTPEEV 940
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 518 FISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL--MMNPRILLLDEATSALDAESEYLV 575
F+ N Y T G LSGG+ QR+ +A + + + +LDE + L +
Sbjct: 487 FLQNVGLDYLTLSRSAGT-LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRL 545
Query: 576 QDAMDSLMK-GRTVLVIAHRLSTVQSADTV------AVVSDGEIVESGTHEELLS 623
+ S+ G T++V+ H T+ +AD + A + GE+V +GT EE+++
Sbjct: 546 IATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTIAN 443
LK +++K+ G+ +A+ G SG GKST+ N
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 668
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 28/213 (13%)
Query: 424 SGSKIALVGPSGGGKSTIANLIERFYDPI--KGKILLNGVPLVEISHEH--LHRKISIVS 479
+G + LVGP+G GKST L+ R KG I G PL S LHR
Sbjct: 25 AGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 480 QEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 539
Q P F + + K + + + A D + G +LSG
Sbjct: 82 QTPP-FATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-----------GRSTNQLSG 129
Query: 540 GQKQRVAIARALMM-----NP--RILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVI 591
G+ QRV +A ++ NP ++LLLDE ++LD + + + +L +G ++
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXS 189
Query: 592 AHRLS-TVQSADTVAVVSDGEIVESGTHEELLS 623
+H L+ T++ A ++ G+ + SG EE+L+
Sbjct: 190 SHDLNHTLRHAHRAWLLKGGKXLASGRREEVLT 222
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 28/213 (13%)
Query: 424 SGSKIALVGPSGGGKSTIANLIERFYDPI--KGKILLNGVPLVEISHEH--LHRKISIVS 479
+G + LVGP+G GKST L+ R KG I G PL S LHR
Sbjct: 25 AGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 480 QEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 539
Q P F + + K + + + A D + G +LSG
Sbjct: 82 QTPP-FATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-----------GRSTNQLSG 129
Query: 540 GQKQRVAIARALMM-----NP--RILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVI 591
G+ QRV +A ++ NP ++LLLDE ++LD + + + +L +G ++
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXS 189
Query: 592 AHRLS-TVQSADTVAVVSDGEIVESGTHEELLS 623
+H L+ T++ A ++ G+ + SG EE+L+
Sbjct: 190 SHDLNHTLRHAHRAWLLKGGKXLASGRREEVLT 222
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 82/200 (41%), Gaps = 44/200 (22%)
Query: 424 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPV 483
G I +VGP+G GK+T + +P +GKI + V+ +P
Sbjct: 311 KGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD----------------LTVAYKPQ 354
Query: 484 LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQT-FVGERGV------- 535
E + E +K+ +A SNF Y+T + G+
Sbjct: 355 YIKADYEGTV------------YELLSKI-DASKLNSNF---YKTELLKPLGIIDLYDRE 398
Query: 536 --RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKG--RTVLVI 591
LSGG+ QRVAIA L+ + I LLDE ++ LD E V A+ L + +T LV+
Sbjct: 399 VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVV 458
Query: 592 AHRLSTVQSADTVAVVSDGE 611
H + + V +GE
Sbjct: 459 EHDVLXIDYVSDRLXVFEGE 478
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRL 595
LSGG+ QRVAIA AL+ N DE +S LD A+ L +G++VLV+ H L
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218
Query: 596 STVQSADTVAVVSDGE 611
+ + + V GE
Sbjct: 219 AVLDYLSDIIHVVYGE 234
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 22/138 (15%)
Query: 515 AHDFISNFPEKYQTF------------VGERGVRLSGGQKQRVAIARALMMNPR---ILL 559
A +F N P +T +G+ LSGG+ QR+ +A L + +
Sbjct: 772 ALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYI 831
Query: 560 LDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSD------GEI 612
LDE T L E + + + L+ +G TV+VI H L +++AD + + G I
Sbjct: 832 LDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYI 891
Query: 613 VESGTHEELLSKGGVYTA 630
V +GT EE+ YT
Sbjct: 892 VATGTPEEIAKNPHSYTG 909
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 537 LSGGQKQRVAIARALM--MNPRILLLDEATSALDA-ESEYLVQDAMDSLMKGRTVLVIAH 593
LSGG+ QR+ +A + + I +LDE T L ++E L++ G TV+V+ H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 594 RLSTVQSADTVAVV------SDGEIVESGTHEELL 622
+++AD + + + G +V GT +ELL
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 515 AHDFISNFPEKYQTF------------VGERGVRLSGGQKQRVAIARALMMNPR---ILL 559
AHDF ++ ++ +G+ LSGG+ QR+ +A L + R + +
Sbjct: 697 AHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYV 756
Query: 560 LDEATSAL-DAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTV------AVVSDGEI 612
LDE T+ L A+ E L + + + G TV+ + H++ V ++D V A G +
Sbjct: 757 LDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRL 816
Query: 613 VESGTHEELLSKGGVYTALVKR 634
V GT E+ G TA R
Sbjct: 817 VAQGTPAEVAQAAGSVTAPYLR 838
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 14/158 (8%)
Query: 461 VPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFIS 520
VP++ + + + R + S ++ ++E +A G + +IE M
Sbjct: 835 VPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLD---- 890
Query: 521 NFPEKYQTFVGERGVR-LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAM 579
PE V +R LSGGQK ++ +A P +++LDE T+ LD +S + A+
Sbjct: 891 --PE----IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKAL 944
Query: 580 DSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESG 616
G V++I H ++ + V V DG + SG
Sbjct: 945 KEFEGG--VIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAH 593
LSGG K ++A+ARA++ N ILLLDE T+ LD + + + +++ G T + I+H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 393 QDGEVELDDVWFAYP--SRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD 450
Q V++ ++ F YP S+P + I + S+IA++GP+G GKST+ N++
Sbjct: 668 QKAIVKVTNMEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 724
Query: 451 PIKGKI 456
P G++
Sbjct: 725 PTSGEV 730
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAH 593
LSGG K ++A+ARA++ N ILLLDE T+ LD + + + +++ G T + I+H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 596
LSGGQK ++ +A P +++LDE T+ LD +S + A+ G V++I H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 597 TVQS-ADTVAVVSDGEIVESG 616
++ + V V DG SG
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSG 980
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 393 QDGEVELDDVWFAYP--SRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD 450
Q V++ + F YP S+P + I + S+IA++GP+G GKST+ N++
Sbjct: 668 QKAIVKVTNXEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 724
Query: 451 PIKGKI 456
P G++
Sbjct: 725 PTSGEV 730
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 33/203 (16%)
Query: 404 FAYPSRPNHMVL---------KGITLKLLSGSKIALVGP--SGGGKSTIANLIERFYDPI 452
F P+ N+ +L K LK+L+G I G S GK + ++RF
Sbjct: 17 FGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEV---LKRF---- 69
Query: 453 KGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKM 512
+GK + N + + + KI V ++ E I D + +++ M
Sbjct: 70 RGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNE-ILTKIDERGKKDEVKELLNM 128
Query: 513 ANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESE 572
N + +N LSGG QR+ +A +L+ + + D+ +S LD
Sbjct: 129 TNLWNKDANI--------------LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRER 174
Query: 573 YLVQDAMDSLMKGRTVLVIAHRL 595
+ A+ L+K + V+V+ H L
Sbjct: 175 MNMAKAIRELLKNKYVIVVDHDL 197
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 36/201 (17%)
Query: 425 GSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVL 484
G I ++GP+G GK+T A +IL+ + E S + + I+S +P
Sbjct: 294 GEIIGILGPNGIGKTTFA------------RILVGEITADEGS---VTPEKQILSYKPQR 338
Query: 485 ----FNCSIEENIAYGCDGKASSAD--IENAAKMANAHDFI-SNFPEKYQTFVGERGVRL 537
++ ++++ + S++ E K N H + SN + L
Sbjct: 339 IFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND------------L 386
Query: 538 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGR--TVLVIAHRL 595
SGG+ Q++ IA L + +LD+ +S LD E Y+V A+ + + R +I H L
Sbjct: 387 SGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL 446
Query: 596 STVQSADTVAVVSDGEIVESG 616
S +V GE ++G
Sbjct: 447 SIHDYIADRIIVFKGEPEKAG 467
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAH 593
LSGG K ++A+ARA++ N ILLLDE T+ LD + + + +++ G T + I+H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 597
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 596
LSGGQK ++ +A P +++LDE T+ LD +S + A+ G V++I H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 597 TVQS-ADTVAVVSDGEIVESG 616
++ + V V DG SG
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSG 974
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 393 QDGEVELDDVWFAYP--SRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD 450
Q V++ + F YP S+P + I + S+IA++GP+G GKST+ N++
Sbjct: 662 QKAIVKVTNXEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 718
Query: 451 PIKGKI 456
P G++
Sbjct: 719 PTSGEV 724
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 506 IENAAK----MANAHDFISNFPEKYQTFV--GERGVRLSGGQKQRVAIARALMMNPR--- 556
IE AA+ +A H ++ + +V G+ LSGG+ QRV +A L
Sbjct: 827 IEEAAEFFEPIAGVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRT 886
Query: 557 ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTV------AVVSD 609
+ +LDE T+ L + + + ++ L+ KG TV+VI H L ++++D +
Sbjct: 887 VYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGG 946
Query: 610 GEIVESGTHEELLSKGGVYTA 630
G +V GT E++ + YT
Sbjct: 947 GTVVAQGTPEDVAAVPASYTG 967
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 523 PEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDS- 581
P + + + LSGG+ QRVAI AL + I L+DE ++ LD+E + +
Sbjct: 454 PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513
Query: 582 -LMKGRTVLVIAH 593
L +T ++ H
Sbjct: 514 ILHNKKTAFIVEH 526
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 536 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHR 594
+LSGG+ QR AI + + + + DE +S LD + + SL+ + V+ + H
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280
Query: 595 LSTVQS-ADTVAVV 607
LS + +D V ++
Sbjct: 281 LSVLDYLSDFVCII 294
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 16/185 (8%)
Query: 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474
L+ I L++ +G K+ ++GP+G GK+T+ I P G I +NG+ + +I +
Sbjct: 21 LENINLEV-NGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRN-----Y 73
Query: 475 ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERG 534
I + P + + N + D + +M A + + +
Sbjct: 74 IRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKL-------GEEILRRKL 126
Query: 535 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHR 594
+LS GQ V + AL P I+ LDE +DA +++ + G+ +++ H
Sbjct: 127 YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--GKEGILVTHE 184
Query: 595 LSTVQ 599
L +
Sbjct: 185 LDMLN 189
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 537 LSGGQKQRVAIA---RALMMNP-RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIA 592
LSGG++ AIA L + P +LDE +ALD + + + +VI
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 593 HRLSTVQSADTVAVVSDGEIVESG 616
HR T++ AD + V+ + ESG
Sbjct: 389 HRKGTMEEADVLYGVT---MQESG 409
>pdb|3GZU|A Chain A, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|B Chain B, Vp7 Recoated Rotavirus Dlp
Length = 800
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 77 VALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAE 112
VA +A V++I+ P FG + + +GD +TP Q AE
Sbjct: 345 VACQLAIVNTIIYPAFGMQRMHYRNGDPQTPFQIAE 380
>pdb|3KZ4|A Chain A, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|B Chain B, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|4F5X|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 880
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 77 VALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAE 112
VA +A V++I+ P FG + + +GD +TP Q AE
Sbjct: 425 VACQLAIVNTIIYPAFGMQRMHYRNGDPQTPFQIAE 460
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQ 480
KL K+ L+G S GG +A + ++ D +KG I+ G+ V ++ + ++R ++ +
Sbjct: 92 KLFGNEKVFLMGSSYGGALALAYAV-KYQDHLKGLIVSGGLSSVPLTVKEMNR---LIDE 147
Query: 481 EPVLFNCSIEENIAYGCDGKASSADIENA 509
P + +I++ YG G + + + A
Sbjct: 148 LPAKYRDAIKK---YGSSGSYENPEYQEA 173
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQ 480
KL K+ L+G S GG +A + ++ D +KG I+ G+ V ++ + ++R ++ +
Sbjct: 92 KLFGNEKVFLMGSSYGGALALAYAV-KYQDHLKGLIVSGGLSSVPLTVKEMNR---LIDE 147
Query: 481 EPVLFNCSIEENIAYGCDGKASSADIENA 509
P + +I++ YG G + + + A
Sbjct: 148 LPAKYRDAIKK---YGSSGSYENPEYQEA 173
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQ 480
KL K+ L+G S GG +A + ++ D +KG I+ G+ V ++ + ++R ++ +
Sbjct: 92 KLFGNEKVFLMGSSYGGALALAYAV-KYQDHLKGLIVSGGLSSVPLTVKEMNR---LIDE 147
Query: 481 EPVLFNCSIEENIAYGCDGKASSADIENA 509
P + +I++ YG G + + + A
Sbjct: 148 LPAKYRDAIKK---YGSSGSYENPEYQEA 173
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQ 480
KL K+ L+G S GG +A + ++ D +KG I+ G+ V ++ + ++R ++ +
Sbjct: 92 KLFGNEKVFLMGSSYGGALALAYAV-KYQDHLKGLIVSGGLSSVPLTVKEMNR---LIDE 147
Query: 481 EPVLFNCSIEENIAYGCDGKASSADIENA 509
P + +I++ YG G + + + A
Sbjct: 148 LPAKYRDAIKK---YGSSGSYENPEYQEA 173
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQ 480
KL K+ L+G S GG +A + ++ D +KG I+ G+ V ++ + ++R ++ +
Sbjct: 92 KLFGNEKVFLMGSSYGGALALAYAV-KYQDHLKGLIVSGGLSSVPLTVKEMNR---LIDE 147
Query: 481 EPVLFNCSIEENIAYGCDGKASSADIENA 509
P + +I++ YG G + + + A
Sbjct: 148 LPAKYRDAIKK---YGSSGSYENPEYQEA 173
>pdb|1NT2|A Chain A, Crystal Structure Of FibrillarinNOP5P COMPLEX
Length = 210
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 369 RRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKI 428
R V+ L D + + K G+ DG E W + S+ M+LKG LKL ++
Sbjct: 6 RNVYLLDDTLVTKSKYGSHYGEKVFDGYRE----WVPWRSKLAAMILKGHRLKLRGDERV 61
Query: 429 ALVGPSGGGKSTIANL 444
+G + G +T+++L
Sbjct: 62 LYLGAASG--TTVSHL 75
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 244 ELSHKTQXXXXXXXXXXEESFGAIRTVRSFAQEKNEISRYSEKVD-ETLKLGLQQAKVVG 302
E H+++ ++ G +RS +E +I E D ET++L L A+
Sbjct: 163 EFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGH 222
Query: 303 LFFGGLN---AASTLSVIVVVIYGANLTITGSMTPGALTSFI 341
L FG L+ AA T+ +V V + SM +L S I
Sbjct: 223 LVFGTLHTTSAAKTIDRVVDVFPAEEKAMVRSMLSESLQSVI 264
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,845,257
Number of Sequences: 62578
Number of extensions: 578827
Number of successful extensions: 2226
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1939
Number of HSP's gapped (non-prelim): 167
length of query: 643
length of database: 14,973,337
effective HSP length: 105
effective length of query: 538
effective length of database: 8,402,647
effective search space: 4520624086
effective search space used: 4520624086
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)