Query 006489
Match_columns 643
No_of_seqs 253 out of 2975
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 00:01:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 3E-122 7E-127 993.0 70.2 574 57-639 134-708 (716)
2 COG2274 SunT ABC-type bacterio 100.0 3E-114 6E-119 969.7 73.8 607 18-635 94-708 (709)
3 KOG0055 Multidrug/pheromone ex 100.0 4E-110 9E-115 945.9 71.8 577 54-636 648-1226(1228)
4 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4E-103 9E-108 903.2 80.3 600 18-635 80-685 (686)
5 PRK11174 cysteine/glutathione 100.0 4E-103 8E-108 890.0 77.6 570 57-638 9-587 (588)
6 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 4E-103 9E-108 907.0 78.1 601 19-632 95-709 (710)
7 TIGR01193 bacteriocin_ABC ABC- 100.0 6E-103 1E-107 904.9 78.1 603 19-633 95-707 (708)
8 TIGR03375 type_I_sec_LssB type 100.0 2E-101 4E-106 890.1 78.1 591 22-624 86-689 (694)
9 TIGR00958 3a01208 Conjugate Tr 100.0 4E-100 8E-105 878.1 77.6 566 55-632 146-711 (711)
10 KOG0055 Multidrug/pheromone ex 100.0 2E-102 4E-107 883.3 55.7 575 56-636 13-589 (1228)
11 COG1132 MdlB ABC-type multidru 100.0 9E-100 2E-104 857.4 77.2 563 58-637 4-566 (567)
12 TIGR01846 type_I_sec_HlyB type 100.0 3.2E-99 7E-104 871.1 80.5 606 19-636 81-693 (694)
13 PRK11176 lipid transporter ATP 100.0 6.8E-98 1E-102 846.2 78.7 568 58-636 13-580 (582)
14 PTZ00265 multidrug resistance 100.0 4.3E-98 9E-103 905.7 78.2 568 57-635 812-1465(1466)
15 PRK11160 cysteine/glutathione 100.0 3.6E-97 8E-102 835.2 77.6 568 58-634 4-573 (574)
16 COG4988 CydD ABC-type transpor 100.0 3.3E-97 7E-102 785.6 71.4 552 74-637 4-557 (559)
17 PRK10790 putative multidrug tr 100.0 1E-95 2E-100 829.1 78.9 567 57-637 10-577 (592)
18 TIGR02203 MsbA_lipidA lipid A 100.0 1.1E-95 2E-100 827.1 78.3 569 58-637 2-570 (571)
19 KOG0056 Heavy metal exporter H 100.0 4.4E-99 1E-103 768.8 38.8 552 72-637 217-776 (790)
20 PRK13657 cyclic beta-1,2-gluca 100.0 2E-94 4.2E-99 817.5 79.2 568 57-638 6-573 (588)
21 KOG0057 Mitochondrial Fe/S clu 100.0 3.4E-95 7E-100 757.4 61.3 552 76-637 36-588 (591)
22 TIGR01192 chvA glucan exporter 100.0 3.8E-93 8.2E-98 803.6 79.5 567 57-637 6-572 (585)
23 TIGR02868 CydC thiol reductant 100.0 4.6E-94 1E-98 805.5 71.5 524 60-595 3-529 (529)
24 TIGR02204 MsbA_rel ABC transpo 100.0 2.6E-93 5.6E-98 808.2 78.3 569 58-635 6-575 (576)
25 PRK10789 putative multidrug tr 100.0 7.8E-93 1.7E-97 799.8 74.8 549 78-637 3-552 (569)
26 TIGR00957 MRP_assoc_pro multi 100.0 9.1E-93 2E-97 868.4 74.6 566 55-634 949-1519(1522)
27 COG4987 CydC ABC-type transpor 100.0 3.6E-92 7.8E-97 734.4 65.7 558 66-633 12-571 (573)
28 KOG0054 Multidrug resistance-a 100.0 1.1E-92 2.3E-97 822.8 66.0 550 61-635 192-743 (1381)
29 PLN03130 ABC transporter C fam 100.0 2.7E-91 5.9E-96 854.0 76.1 567 54-636 897-1475(1622)
30 TIGR02857 CydD thiol reductant 100.0 1E-90 2.2E-95 778.5 72.3 528 68-607 1-529 (529)
31 TIGR01842 type_I_sec_PrtD type 100.0 1.2E-89 2.5E-94 771.1 74.1 541 66-624 2-543 (544)
32 PTZ00243 ABC transporter; Prov 100.0 4.6E-90 1E-94 842.2 76.0 568 55-637 945-1548(1560)
33 PLN03232 ABC transporter C fam 100.0 6.2E-90 1.3E-94 842.3 73.1 568 54-637 894-1473(1495)
34 PTZ00265 multidrug resistance 100.0 3.6E-89 7.8E-94 827.9 78.3 570 55-636 44-729 (1466)
35 COG5265 ATM1 ABC-type transpor 100.0 7.9E-92 1.7E-96 709.5 40.6 492 139-633 3-496 (497)
36 KOG0054 Multidrug resistance-a 100.0 5E-90 1.1E-94 800.5 61.3 575 52-637 797-1377(1381)
37 PLN03130 ABC transporter C fam 100.0 4.9E-88 1.1E-92 825.3 74.6 547 61-635 292-840 (1622)
38 PLN03232 ABC transporter C fam 100.0 3.7E-88 8.1E-93 826.6 73.1 549 61-636 292-841 (1495)
39 TIGR01271 CFTR_protein cystic 100.0 1.5E-86 3.2E-91 811.2 75.1 503 129-638 936-1455(1490)
40 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.6E-83 5.7E-88 719.8 69.1 533 57-615 4-551 (555)
41 COG4618 ArpD ABC-type protease 100.0 2.8E-84 6.1E-89 668.8 54.9 545 63-624 16-561 (580)
42 TIGR00957 MRP_assoc_pro multi 100.0 6.6E-80 1.4E-84 755.1 75.5 550 60-635 307-862 (1522)
43 PRK10522 multidrug transporter 100.0 5.8E-78 1.3E-82 676.4 68.7 530 61-624 4-540 (547)
44 TIGR01271 CFTR_protein cystic 100.0 2.7E-77 5.8E-82 729.9 73.5 543 61-633 71-646 (1490)
45 PTZ00243 ABC transporter; Prov 100.0 4.8E-75 1E-79 710.3 75.1 554 55-634 229-880 (1560)
46 TIGR00954 3a01203 Peroxysomal 100.0 1.7E-72 3.6E-77 640.8 65.0 530 57-609 78-653 (659)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 8E-58 1.7E-62 465.7 28.2 237 395-635 1-237 (275)
48 PRK14257 phosphate ABC transpo 100.0 1.7E-54 3.7E-59 452.5 26.8 225 392-624 76-314 (329)
49 COG1126 GlnQ ABC-type polar am 100.0 1.1E-53 2.3E-58 399.5 22.1 215 396-624 2-226 (240)
50 cd03252 ABCC_Hemolysin The ABC 100.0 6.3E-52 1.4E-56 417.0 28.3 235 397-633 1-235 (237)
51 COG4615 PvdE ABC-type sideroph 100.0 1.1E-48 2.4E-53 391.9 47.7 523 61-616 4-530 (546)
52 COG4178 ABC-type uncharacteriz 100.0 4.8E-48 1.1E-52 417.7 56.5 497 86-609 63-588 (604)
53 cd03288 ABCC_SUR2 The SUR doma 100.0 4E-51 8.6E-56 415.5 29.1 240 393-635 16-256 (257)
54 COG1135 AbcC ABC-type metal io 100.0 5.4E-52 1.2E-56 407.4 21.0 217 397-624 2-232 (339)
55 COG1125 OpuBA ABC-type proline 100.0 1E-51 2.2E-56 393.5 19.4 214 397-624 2-226 (309)
56 cd03253 ABCC_ATM1_transporter 100.0 2.9E-50 6.4E-55 404.6 28.0 235 397-634 1-235 (236)
57 cd03251 ABCC_MsbA MsbA is an e 100.0 2.5E-50 5.5E-55 404.6 27.2 233 397-631 1-233 (234)
58 COG1117 PstB ABC-type phosphat 100.0 4E-51 8.6E-56 380.2 18.4 219 396-624 7-238 (253)
59 cd03254 ABCC_Glucan_exporter_l 100.0 4.7E-50 1E-54 401.3 27.1 227 396-625 2-228 (229)
60 cd03244 ABCC_MRP_domain2 Domai 100.0 6.2E-50 1.3E-54 398.2 26.9 220 395-617 1-220 (221)
61 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 9.4E-50 2E-54 401.4 27.5 235 397-632 1-235 (238)
62 cd03245 ABCC_bacteriocin_expor 100.0 8.7E-49 1.9E-53 389.7 27.1 219 396-616 2-220 (220)
63 COG1120 FepC ABC-type cobalami 100.0 2.2E-49 4.7E-54 390.2 21.5 215 396-624 2-229 (258)
64 TIGR02314 ABC_MetN D-methionin 100.0 9.5E-49 2.1E-53 409.8 26.1 217 397-624 2-231 (343)
65 cd03261 ABC_Org_Solvent_Resist 100.0 1.6E-48 3.4E-53 391.7 23.9 219 397-629 1-232 (235)
66 PRK13631 cbiO cobalt transport 100.0 6.2E-48 1.3E-52 401.9 28.4 222 396-624 21-266 (320)
67 COG3839 MalK ABC-type sugar tr 100.0 1.7E-48 3.7E-53 398.4 23.4 213 396-624 3-224 (338)
68 cd03260 ABC_PstB_phosphate_tra 100.0 3.8E-48 8.1E-53 386.9 23.1 213 397-621 1-227 (227)
69 COG1116 TauB ABC-type nitrate/ 100.0 3.2E-48 6.9E-53 374.3 21.2 199 396-613 3-212 (248)
70 COG1136 SalX ABC-type antimicr 100.0 9.7E-48 2.1E-52 371.3 24.3 207 397-614 2-222 (226)
71 COG1122 CbiO ABC-type cobalt t 100.0 5E-48 1.1E-52 381.0 22.7 216 396-624 3-229 (235)
72 cd03248 ABCC_TAP TAP, the Tran 100.0 1E-47 2.2E-52 383.5 24.6 218 394-612 9-226 (226)
73 PRK13650 cbiO cobalt transport 100.0 1.3E-47 2.9E-52 393.8 25.8 218 396-624 4-230 (279)
74 COG1127 Ttg2A ABC-type transpo 100.0 1E-47 2.2E-52 364.9 21.5 224 396-633 8-246 (263)
75 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.3E-47 7.1E-52 374.6 25.9 204 394-618 4-207 (207)
76 PRK14269 phosphate ABC transpo 100.0 1.8E-47 3.9E-52 386.5 24.5 219 396-624 2-231 (246)
77 cd03291 ABCC_CFTR1 The CFTR su 100.0 1E-46 2.2E-51 385.6 30.3 240 370-632 16-256 (282)
78 COG1124 DppF ABC-type dipeptid 100.0 1.6E-47 3.5E-52 365.6 22.2 226 396-632 3-241 (252)
79 COG3840 ThiQ ABC-type thiamine 100.0 1.3E-47 2.8E-52 347.5 20.1 212 397-626 2-222 (231)
80 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.9E-47 1.1E-51 371.5 23.1 211 396-624 4-228 (254)
81 PRK14250 phosphate ABC transpo 100.0 1.3E-46 2.7E-51 379.0 26.7 223 396-632 3-231 (241)
82 PRK11153 metN DL-methionine tr 100.0 6E-47 1.3E-51 399.0 25.4 217 397-624 2-231 (343)
83 PRK13647 cbiO cobalt transport 100.0 6.5E-47 1.4E-51 387.7 24.8 214 396-622 4-226 (274)
84 PRK13635 cbiO cobalt transport 100.0 7.2E-47 1.6E-51 388.1 24.9 217 396-624 5-230 (279)
85 cd03263 ABC_subfamily_A The AB 100.0 6.8E-47 1.5E-51 376.1 23.8 212 397-621 1-219 (220)
86 cd03250 ABCC_MRP_domain1 Domai 100.0 8.9E-47 1.9E-51 370.6 24.0 200 397-611 1-204 (204)
87 PRK13637 cbiO cobalt transport 100.0 1E-46 2.2E-51 388.6 25.6 218 397-623 3-234 (287)
88 cd03219 ABC_Mj1267_LivG_branch 100.0 6.7E-47 1.5E-51 380.2 23.6 213 397-623 1-232 (236)
89 TIGR00960 3a0501s02 Type II (G 100.0 4.6E-47 1E-51 376.1 21.9 204 397-612 2-216 (216)
90 PRK14273 phosphate ABC transpo 100.0 1.1E-46 2.4E-51 382.7 25.2 220 395-624 6-239 (254)
91 PRK11650 ugpC glycerol-3-phosp 100.0 1.1E-46 2.4E-51 397.4 26.1 214 396-624 3-225 (356)
92 PRK14242 phosphate transporter 100.0 9.3E-47 2E-51 383.1 24.2 219 396-624 6-238 (253)
93 cd03256 ABC_PhnC_transporter A 100.0 1.1E-46 2.4E-51 380.0 24.5 213 397-622 1-233 (241)
94 PRK11432 fbpC ferric transport 100.0 8.9E-47 1.9E-51 397.0 24.7 213 396-624 6-227 (351)
95 PRK13643 cbiO cobalt transport 100.0 1.5E-46 3.2E-51 387.6 25.7 216 397-623 2-233 (288)
96 TIGR00972 3a0107s01c2 phosphat 100.0 1.2E-46 2.7E-51 380.7 24.5 218 397-624 2-233 (247)
97 TIGR01186 proV glycine betaine 100.0 5.9E-47 1.3E-51 398.3 22.9 202 412-624 6-220 (363)
98 cd03296 ABC_CysA_sulfate_impor 100.0 9.7E-47 2.1E-51 379.6 23.3 212 397-624 3-227 (239)
99 COG3842 PotA ABC-type spermidi 100.0 4.9E-47 1.1E-51 389.7 21.0 213 396-624 5-227 (352)
100 PRK10744 pstB phosphate transp 100.0 2.5E-46 5.5E-51 381.1 26.2 221 394-624 11-245 (260)
101 TIGR02315 ABC_phnC phosphonate 100.0 1.5E-46 3.3E-51 379.4 24.0 213 397-622 2-234 (243)
102 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.4E-46 3E-51 384.4 24.0 219 398-630 26-258 (269)
103 PRK13642 cbiO cobalt transport 100.0 2.7E-46 5.8E-51 384.0 26.1 219 396-625 4-231 (277)
104 PRK13646 cbiO cobalt transport 100.0 1.8E-46 4E-51 386.7 24.8 217 397-624 3-236 (286)
105 TIGR03265 PhnT2 putative 2-ami 100.0 2E-46 4.4E-51 395.0 24.6 213 396-624 4-225 (353)
106 cd03224 ABC_TM1139_LivF_branch 100.0 3E-46 6.4E-51 372.1 24.2 213 397-623 1-221 (222)
107 cd03259 ABC_Carb_Solutes_like 100.0 1.3E-46 2.7E-51 372.2 21.4 204 397-616 1-213 (213)
108 cd03258 ABC_MetN_methionine_tr 100.0 2.8E-46 6.1E-51 374.9 24.2 216 397-623 2-230 (233)
109 PRK14267 phosphate ABC transpo 100.0 2.6E-46 5.7E-51 379.8 24.1 219 396-624 4-238 (253)
110 PRK13636 cbiO cobalt transport 100.0 2.8E-46 6.1E-51 384.8 24.6 216 396-624 5-232 (283)
111 PRK11629 lolD lipoprotein tran 100.0 3.3E-46 7.1E-51 374.3 24.4 211 396-617 5-228 (233)
112 PRK14235 phosphate transporter 100.0 3.3E-46 7.1E-51 381.5 24.9 221 394-624 17-252 (267)
113 PRK13632 cbiO cobalt transport 100.0 3.6E-46 7.8E-51 382.0 25.1 217 396-624 7-232 (271)
114 PRK13634 cbiO cobalt transport 100.0 2.9E-46 6.2E-51 385.9 24.4 218 397-624 3-236 (290)
115 cd03264 ABC_drug_resistance_li 100.0 2.5E-46 5.3E-51 369.6 22.5 204 397-616 1-211 (211)
116 PRK10851 sulfate/thiosulfate t 100.0 3.9E-46 8.5E-51 392.9 24.9 212 397-624 3-227 (353)
117 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.3E-46 5E-51 371.7 21.6 205 397-612 1-218 (218)
118 PRK13652 cbiO cobalt transport 100.0 6.5E-46 1.4E-50 381.1 25.5 215 397-624 4-228 (277)
119 PRK13640 cbiO cobalt transport 100.0 9.3E-46 2E-50 380.7 26.7 216 396-623 5-232 (282)
120 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.3E-46 9.3E-51 375.6 23.5 217 397-624 1-226 (242)
121 cd03226 ABC_cobalt_CbiO_domain 100.0 2.2E-46 4.9E-51 368.1 20.9 200 398-613 1-205 (205)
122 COG2884 FtsE Predicted ATPase 100.0 1.6E-46 3.5E-51 343.2 18.1 209 397-618 2-221 (223)
123 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 9.4E-46 2E-50 371.7 25.5 221 397-632 2-232 (236)
124 PRK09536 btuD corrinoid ABC tr 100.0 6.4E-46 1.4E-50 395.1 25.5 222 396-632 3-236 (402)
125 cd03265 ABC_DrrA DrrA is the A 100.0 6E-46 1.3E-50 369.2 23.5 210 397-621 1-219 (220)
126 PRK13633 cobalt transporter AT 100.0 6.9E-46 1.5E-50 381.5 24.7 218 396-624 4-234 (280)
127 TIGR03258 PhnT 2-aminoethylpho 100.0 5.5E-46 1.2E-50 392.2 24.4 215 394-624 3-229 (362)
128 PRK14236 phosphate transporter 100.0 9.2E-46 2E-50 379.2 25.3 221 394-624 23-257 (272)
129 PRK13648 cbiO cobalt transport 100.0 8.6E-46 1.9E-50 379.0 25.0 217 396-624 7-232 (269)
130 PRK09452 potA putrescine/sperm 100.0 6.6E-46 1.4E-50 393.0 24.7 213 396-624 14-235 (375)
131 COG3638 ABC-type phosphate/pho 100.0 4.2E-46 9.1E-51 352.9 20.6 215 396-623 3-237 (258)
132 cd03266 ABC_NatA_sodium_export 100.0 7.3E-46 1.6E-50 368.1 23.4 208 397-616 2-218 (218)
133 PRK14247 phosphate ABC transpo 100.0 9.1E-46 2E-50 375.1 24.5 219 396-624 3-235 (250)
134 PRK13651 cobalt transporter AT 100.0 8.4E-46 1.8E-50 383.7 24.7 217 397-624 3-255 (305)
135 TIGR02211 LolD_lipo_ex lipopro 100.0 7.2E-46 1.6E-50 369.0 23.0 206 397-613 2-220 (221)
136 PRK14274 phosphate ABC transpo 100.0 8.9E-46 1.9E-50 377.0 24.2 219 396-624 12-244 (259)
137 cd03268 ABC_BcrA_bacitracin_re 100.0 6.8E-46 1.5E-50 365.6 22.5 204 397-616 1-208 (208)
138 PRK15079 oligopeptide ABC tran 100.0 1.6E-45 3.5E-50 385.3 26.6 224 396-630 8-259 (331)
139 PRK14240 phosphate transporter 100.0 1.2E-45 2.6E-50 374.3 24.8 220 395-624 2-235 (250)
140 PRK14245 phosphate ABC transpo 100.0 8.5E-46 1.8E-50 375.3 23.6 219 396-624 3-235 (250)
141 PRK14251 phosphate ABC transpo 100.0 9.2E-46 2E-50 375.3 23.7 219 396-624 4-236 (251)
142 cd03218 ABC_YhbG The ABC trans 100.0 1E-45 2.2E-50 370.7 23.8 213 397-623 1-222 (232)
143 PRK14237 phosphate transporter 100.0 1.3E-45 2.8E-50 377.1 24.9 220 395-624 19-252 (267)
144 PRK10575 iron-hydroxamate tran 100.0 1E-45 2.3E-50 377.5 24.2 214 396-623 11-237 (265)
145 PRK13644 cbiO cobalt transport 100.0 1.5E-45 3.3E-50 377.6 25.4 215 397-624 2-225 (274)
146 PRK14268 phosphate ABC transpo 100.0 9.2E-46 2E-50 376.5 23.6 219 396-624 12-243 (258)
147 TIGR03005 ectoine_ehuA ectoine 100.0 1.2E-45 2.6E-50 374.6 24.3 214 397-624 1-237 (252)
148 PRK11000 maltose/maltodextrin 100.0 9.1E-46 2E-50 393.1 24.5 213 396-624 3-224 (369)
149 cd03290 ABCC_SUR1_N The SUR do 100.0 1.5E-45 3.2E-50 365.8 24.4 211 397-611 1-218 (218)
150 PRK11831 putative ABC transpor 100.0 1.4E-45 3.1E-50 377.2 25.0 224 396-633 7-244 (269)
151 TIGR03411 urea_trans_UrtD urea 100.0 1.8E-45 3.8E-50 371.3 25.0 213 397-623 3-231 (242)
152 PRK11124 artP arginine transpo 100.0 1.4E-45 3.1E-50 371.9 24.3 214 397-624 3-231 (242)
153 cd03247 ABCC_cytochrome_bd The 100.0 8.7E-46 1.9E-50 355.4 21.5 178 397-616 1-178 (178)
154 PRK09493 glnQ glutamine ABC tr 100.0 1.2E-45 2.7E-50 371.9 23.7 214 397-624 2-226 (240)
155 cd03301 ABC_MalK_N The N-termi 100.0 7.9E-46 1.7E-50 366.5 21.8 204 397-616 1-213 (213)
156 PRK14239 phosphate transporter 100.0 1.4E-45 3.1E-50 374.2 24.3 219 396-624 5-237 (252)
157 PRK14248 phosphate ABC transpo 100.0 1.7E-45 3.6E-50 376.8 24.7 219 396-624 21-253 (268)
158 PRK14244 phosphate ABC transpo 100.0 7.6E-46 1.6E-50 375.9 21.7 218 397-624 6-238 (251)
159 PRK10247 putative ABC transpor 100.0 1.5E-45 3.2E-50 367.3 23.4 211 396-619 7-223 (225)
160 PRK14249 phosphate ABC transpo 100.0 2.2E-45 4.7E-50 372.5 25.0 219 396-624 4-236 (251)
161 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.1E-45 2.4E-50 367.2 22.3 207 397-619 1-219 (220)
162 cd03225 ABC_cobalt_CbiO_domain 100.0 9.7E-46 2.1E-50 365.3 21.6 202 398-611 1-211 (211)
163 PRK11264 putative amino-acid A 100.0 2.8E-45 6.1E-50 371.6 25.2 214 397-624 4-234 (250)
164 TIGR02769 nickel_nikE nickel i 100.0 3.5E-45 7.5E-50 373.6 25.9 223 397-629 3-246 (265)
165 PRK11231 fecE iron-dicitrate t 100.0 2.1E-45 4.6E-50 373.3 24.1 222 397-633 3-236 (255)
166 PRK13638 cbiO cobalt transport 100.0 2.4E-45 5.2E-50 376.1 24.3 214 397-624 2-226 (271)
167 PRK14262 phosphate ABC transpo 100.0 2.7E-45 5.8E-50 371.7 24.4 226 396-631 3-243 (250)
168 cd03292 ABC_FtsE_transporter F 100.0 1.7E-45 3.7E-50 364.5 22.2 203 397-612 1-214 (214)
169 TIGR02673 FtsE cell division A 100.0 1.4E-45 3.1E-50 364.9 21.7 202 397-611 2-214 (214)
170 PRK13537 nodulation ABC transp 100.0 2.5E-45 5.4E-50 380.9 24.5 214 396-624 7-228 (306)
171 PRK11247 ssuB aliphatic sulfon 100.0 3.1E-45 6.7E-50 370.8 24.5 205 396-620 12-220 (257)
172 PRK10619 histidine/lysine/argi 100.0 3.3E-45 7.2E-50 372.4 24.8 217 395-624 4-242 (257)
173 TIGR03410 urea_trans_UrtE urea 100.0 1.4E-45 3.1E-50 369.1 21.6 212 397-621 1-219 (230)
174 PRK13645 cbiO cobalt transport 100.0 3.6E-45 7.8E-50 378.1 25.2 219 395-623 5-240 (289)
175 PRK14259 phosphate ABC transpo 100.0 5.1E-45 1.1E-49 372.9 26.0 220 395-624 12-254 (269)
176 PRK14253 phosphate ABC transpo 100.0 3.1E-45 6.8E-50 371.0 24.2 218 396-623 3-233 (249)
177 PRK13649 cbiO cobalt transport 100.0 3.1E-45 6.7E-50 377.2 24.5 218 397-624 3-235 (280)
178 PRK10070 glycine betaine trans 100.0 3.9E-45 8.5E-50 388.9 25.9 201 413-624 42-255 (400)
179 PRK14256 phosphate ABC transpo 100.0 4.2E-45 9E-50 370.7 24.9 220 395-624 3-237 (252)
180 PRK14238 phosphate transporter 100.0 4.4E-45 9.5E-50 373.8 25.1 219 396-624 24-256 (271)
181 PRK14261 phosphate ABC transpo 100.0 4.7E-45 1E-49 370.5 25.2 219 396-624 6-238 (253)
182 PRK13548 hmuV hemin importer A 100.0 6.7E-45 1.4E-49 369.9 26.0 214 397-624 3-231 (258)
183 PRK10584 putative ABC transpor 100.0 4.7E-45 1E-49 364.8 24.5 209 396-615 6-227 (228)
184 PRK14271 phosphate ABC transpo 100.0 1.1E-44 2.4E-49 371.4 27.8 219 396-624 21-252 (276)
185 cd03298 ABC_ThiQ_thiamine_tran 100.0 3.9E-45 8.4E-50 361.0 23.5 202 397-616 1-211 (211)
186 PRK14270 phosphate ABC transpo 100.0 5E-45 1.1E-49 369.9 24.6 219 396-624 4-236 (251)
187 cd03235 ABC_Metallic_Cations A 100.0 2.1E-45 4.6E-50 363.4 20.8 199 398-616 1-213 (213)
188 PRK11607 potG putrescine trans 100.0 5.6E-45 1.2E-49 386.6 25.4 214 395-624 18-240 (377)
189 PRK13641 cbiO cobalt transport 100.0 8E-45 1.7E-49 374.8 25.9 218 396-624 2-235 (287)
190 COG1118 CysA ABC-type sulfate/ 100.0 1.5E-45 3.2E-50 361.1 19.1 215 396-624 2-228 (345)
191 cd03246 ABCC_Protease_Secretio 100.0 3.9E-45 8.3E-50 349.2 21.6 172 397-612 1-173 (173)
192 PRK11614 livF leucine/isoleuci 100.0 5.5E-45 1.2E-49 366.4 23.9 218 396-623 5-226 (237)
193 TIGR03873 F420-0_ABC_ATP propo 100.0 5.3E-45 1.1E-49 370.7 24.0 213 397-623 2-226 (256)
194 PRK14254 phosphate ABC transpo 100.0 9.3E-45 2E-49 373.4 26.1 220 395-624 38-270 (285)
195 PRK11308 dppF dipeptide transp 100.0 9.7E-45 2.1E-49 379.1 26.6 226 396-631 5-253 (327)
196 PRK13639 cbiO cobalt transport 100.0 6.1E-45 1.3E-49 373.5 24.6 215 397-624 2-227 (275)
197 cd03300 ABC_PotA_N PotA is an 100.0 3.2E-45 7E-50 366.7 21.9 212 397-624 1-221 (232)
198 PRK14243 phosphate transporter 100.0 7.2E-45 1.6E-49 370.9 24.8 219 396-624 10-249 (264)
199 PRK11300 livG leucine/isoleuci 100.0 6.9E-45 1.5E-49 369.9 24.6 214 396-623 5-243 (255)
200 PRK15112 antimicrobial peptide 100.0 9.9E-45 2.2E-49 370.5 25.8 231 396-637 4-255 (267)
201 TIGR00968 3a0106s01 sulfate AB 100.0 7.4E-45 1.6E-49 365.2 24.4 211 397-623 1-220 (237)
202 PRK10771 thiQ thiamine transpo 100.0 1.3E-44 2.7E-49 362.5 25.9 211 397-625 2-221 (232)
203 TIGR01288 nodI ATP-binding ABC 100.0 6.4E-45 1.4E-49 378.4 24.5 214 396-624 4-225 (303)
204 PRK10253 iron-enterobactin tra 100.0 1.1E-44 2.3E-49 370.1 25.3 215 395-623 6-233 (265)
205 PRK14260 phosphate ABC transpo 100.0 6.1E-45 1.3E-49 370.7 23.4 219 396-624 7-244 (259)
206 PRK10908 cell division protein 100.0 8.4E-45 1.8E-49 361.4 23.4 204 397-613 2-216 (222)
207 PRK09984 phosphonate/organopho 100.0 1.5E-44 3.2E-49 368.6 25.7 228 396-639 4-256 (262)
208 cd03257 ABC_NikE_OppD_transpor 100.0 1.4E-44 3.1E-49 361.4 24.9 210 397-616 2-228 (228)
209 PRK14241 phosphate transporter 100.0 8.4E-45 1.8E-49 369.6 23.4 219 396-624 4-243 (258)
210 PRK14266 phosphate ABC transpo 100.0 1.1E-44 2.3E-49 367.4 24.0 219 396-624 3-235 (250)
211 TIGR03415 ABC_choXWV_ATP choli 100.0 1.2E-44 2.5E-49 382.5 25.0 208 412-630 37-262 (382)
212 PRK14252 phosphate ABC transpo 100.0 1.3E-44 2.8E-49 369.6 24.5 220 394-623 14-249 (265)
213 cd03262 ABC_HisP_GlnQ_permease 100.0 5.6E-45 1.2E-49 360.5 21.0 202 397-612 1-213 (213)
214 PRK10895 lipopolysaccharide AB 100.0 8.1E-45 1.8E-49 366.2 22.5 215 396-624 3-227 (241)
215 PRK14275 phosphate ABC transpo 100.0 2.1E-44 4.5E-49 371.2 25.9 220 395-624 38-271 (286)
216 cd03269 ABC_putative_ATPase Th 100.0 8.2E-45 1.8E-49 358.4 21.6 202 397-616 1-210 (210)
217 PRK14272 phosphate ABC transpo 100.0 1.7E-44 3.6E-49 366.4 24.3 219 396-624 4-237 (252)
218 TIGR03522 GldA_ABC_ATP gliding 100.0 1.6E-44 3.5E-49 374.8 24.7 213 397-624 3-222 (301)
219 PRK14264 phosphate ABC transpo 100.0 2.1E-44 4.6E-49 374.3 25.6 220 395-624 44-290 (305)
220 PRK11022 dppD dipeptide transp 100.0 2.3E-44 5.1E-49 376.4 26.0 228 397-632 4-253 (326)
221 TIGR01978 sufC FeS assembly AT 100.0 1.3E-44 2.8E-49 365.4 22.9 214 397-622 1-233 (243)
222 PRK14263 phosphate ABC transpo 100.0 1.8E-44 3.9E-49 367.0 24.0 219 396-624 8-246 (261)
223 PRK09473 oppD oligopeptide tra 100.0 2.2E-44 4.8E-49 376.9 25.1 228 396-631 12-260 (330)
224 TIGR01277 thiQ thiamine ABC tr 100.0 2.7E-44 5.9E-49 355.3 23.9 203 397-617 1-212 (213)
225 PRK11144 modC molybdate transp 100.0 2.4E-44 5.2E-49 380.5 24.8 210 397-624 2-219 (352)
226 cd03299 ABC_ModC_like Archeal 100.0 2.7E-44 5.8E-49 360.7 23.9 211 397-624 1-220 (235)
227 PRK13547 hmuV hemin importer A 100.0 3.5E-44 7.6E-49 366.1 25.0 213 397-623 2-244 (272)
228 PRK14258 phosphate ABC transpo 100.0 3.1E-44 6.7E-49 365.8 24.3 220 395-624 6-246 (261)
229 PRK14255 phosphate ABC transpo 100.0 2.6E-44 5.6E-49 365.0 23.6 219 396-624 5-237 (252)
230 PRK13536 nodulation factor exp 100.0 2.9E-44 6.3E-49 376.7 24.6 214 396-624 41-262 (340)
231 PRK14246 phosphate ABC transpo 100.0 7.6E-44 1.7E-48 361.6 25.4 226 396-631 10-250 (257)
232 PRK15093 antimicrobial peptide 100.0 7.4E-44 1.6E-48 373.8 26.0 225 397-632 4-258 (330)
233 PRK14265 phosphate ABC transpo 100.0 8.2E-44 1.8E-48 364.8 25.6 219 396-624 20-259 (274)
234 PRK10419 nikE nickel transport 100.0 4.3E-44 9.4E-49 365.8 23.3 226 397-633 4-251 (268)
235 PRK11701 phnK phosphonate C-P 100.0 7.1E-44 1.5E-48 362.8 24.6 227 396-631 6-250 (258)
236 TIGR01188 drrA daunorubicin re 100.0 3.7E-44 8.1E-49 372.5 22.8 201 412-624 6-214 (302)
237 TIGR02982 heterocyst_DevA ABC 100.0 7.3E-44 1.6E-48 354.1 22.7 205 397-612 2-219 (220)
238 PRK11248 tauB taurine transpor 100.0 1.3E-43 2.7E-48 359.5 23.7 203 397-618 2-215 (255)
239 PRK10418 nikD nickel transport 100.0 2.9E-43 6.2E-48 357.4 25.5 227 396-636 4-245 (254)
240 cd03234 ABCG_White The White s 100.0 6E-44 1.3E-48 356.2 20.1 206 397-616 4-226 (226)
241 TIGR02142 modC_ABC molybdenum 100.0 1.5E-43 3.2E-48 375.2 24.3 207 401-624 4-222 (354)
242 TIGR03740 galliderm_ABC gallid 100.0 3.3E-43 7.3E-48 350.2 24.3 206 397-620 1-210 (223)
243 cd03230 ABC_DR_subfamily_A Thi 100.0 1.7E-43 3.7E-48 337.8 20.7 170 397-612 1-173 (173)
244 cd03228 ABCC_MRP_Like The MRP 100.0 2.2E-43 4.8E-48 336.4 21.4 171 397-611 1-171 (171)
245 KOG0060 Long-chain acyl-CoA tr 100.0 3.8E-40 8.2E-45 345.8 46.2 474 124-609 128-641 (659)
246 cd03229 ABC_Class3 This class 100.0 2.4E-43 5.3E-48 338.3 20.6 172 397-611 1-178 (178)
247 cd03233 ABC_PDR_domain1 The pl 100.0 3.4E-43 7.3E-48 344.1 21.8 191 396-616 3-202 (202)
248 TIGR02323 CP_lyasePhnK phospho 100.0 1E-42 2.2E-47 353.5 25.6 227 396-631 3-247 (253)
249 COG1131 CcmA ABC-type multidru 100.0 4.9E-43 1.1E-47 360.3 22.7 215 396-624 4-227 (293)
250 cd03297 ABC_ModC_molybdenum_tr 100.0 5.1E-43 1.1E-47 346.6 21.9 201 397-616 2-214 (214)
251 PRK09544 znuC high-affinity zi 100.0 1.2E-42 2.7E-47 351.1 24.6 208 396-632 4-217 (251)
252 PRK15056 manganese/iron transp 100.0 8.9E-43 1.9E-47 357.1 23.5 211 396-623 6-230 (272)
253 CHL00131 ycf16 sulfate ABC tra 100.0 1.9E-42 4.2E-47 351.3 24.8 213 396-621 7-239 (252)
254 cd03223 ABCD_peroxisomal_ALDP 100.0 9E-43 2E-47 330.1 20.8 163 397-610 1-163 (166)
255 PRK09580 sufC cysteine desulfu 100.0 9.8E-43 2.1E-47 352.7 22.5 213 397-621 2-233 (248)
256 cd03213 ABCG_EPDR ABCG transpo 100.0 8.1E-43 1.8E-47 339.2 21.0 183 396-616 3-194 (194)
257 TIGR03608 L_ocin_972_ABC putat 100.0 6.2E-43 1.3E-47 344.1 19.9 195 399-607 1-206 (206)
258 cd03232 ABC_PDR_domain2 The pl 100.0 7.2E-43 1.6E-47 339.1 20.1 182 396-616 3-192 (192)
259 cd03215 ABC_Carb_Monos_II This 100.0 8.4E-43 1.8E-47 335.8 20.1 172 396-612 4-182 (182)
260 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.3E-42 4.9E-47 337.9 22.3 185 397-622 1-192 (200)
261 COG4175 ProV ABC-type proline/ 100.0 7E-43 1.5E-47 342.3 18.1 218 396-624 4-255 (386)
262 cd03214 ABC_Iron-Siderophores_ 100.0 2E-42 4.4E-47 332.6 19.9 177 398-616 1-180 (180)
263 COG4619 ABC-type uncharacteriz 100.0 8.4E-43 1.8E-47 311.8 15.6 193 411-613 15-213 (223)
264 PRK03695 vitamin B12-transport 100.0 5.9E-42 1.3E-46 346.2 24.0 217 397-633 1-231 (248)
265 COG0410 LivF ABC-type branched 100.0 6.3E-42 1.4E-46 325.1 21.5 221 396-625 3-228 (237)
266 TIGR02770 nickel_nikD nickel i 100.0 4.8E-42 1E-46 343.3 21.4 206 414-629 1-222 (230)
267 TIGR01184 ntrCD nitrate transp 100.0 8.6E-42 1.9E-46 341.2 23.2 192 415-622 1-203 (230)
268 PRK15439 autoinducer 2 ABC tra 100.0 9E-42 2E-46 379.7 25.6 214 396-623 11-229 (510)
269 cd03231 ABC_CcmA_heme_exporter 100.0 8.9E-42 1.9E-46 334.1 22.4 195 397-607 1-198 (201)
270 PRK13540 cytochrome c biogenes 100.0 7.4E-42 1.6E-46 334.5 21.0 195 397-606 2-198 (200)
271 cd03216 ABC_Carb_Monos_I This 100.0 1.3E-41 2.8E-46 321.2 21.4 159 397-614 1-162 (163)
272 PRK10261 glutathione transport 100.0 1.5E-41 3.3E-46 385.4 25.7 227 396-633 313-565 (623)
273 PRK13549 xylose transporter AT 100.0 8.1E-42 1.7E-46 380.3 22.3 213 396-622 5-231 (506)
274 PRK09700 D-allose transporter 100.0 9.2E-42 2E-46 380.4 22.3 214 396-623 5-234 (510)
275 PRK13538 cytochrome c biogenes 100.0 1.8E-41 3.8E-46 332.9 21.3 196 397-607 2-202 (204)
276 cd03267 ABC_NatA_like Similar 100.0 1.8E-41 3.8E-46 340.3 21.0 193 412-616 34-236 (236)
277 COG1123 ATPase components of v 100.0 3.3E-41 7.2E-46 360.3 23.8 231 396-637 280-534 (539)
278 COG4555 NatA ABC-type Na+ tran 100.0 4.4E-42 9.5E-47 316.7 14.5 214 397-624 2-223 (245)
279 PRK10762 D-ribose transporter 100.0 3E-41 6.4E-46 375.3 23.9 213 396-622 4-229 (501)
280 PRK10938 putative molybdenum t 100.0 4.6E-41 9.9E-46 373.2 24.0 211 397-624 4-225 (490)
281 COG0444 DppD ABC-type dipeptid 100.0 1.2E-40 2.6E-45 332.7 24.2 223 397-632 2-253 (316)
282 PRK11288 araG L-arabinose tran 100.0 3.2E-41 6.9E-46 375.0 22.3 209 396-618 4-224 (501)
283 PRK10261 glutathione transport 100.0 5.2E-41 1.1E-45 381.1 23.7 221 396-624 12-259 (623)
284 PRK13539 cytochrome c biogenes 100.0 7.5E-41 1.6E-45 329.1 21.7 195 397-609 3-200 (207)
285 PRK15134 microcin C ABC transp 100.0 4.5E-41 9.8E-46 376.3 22.8 217 396-624 275-516 (529)
286 PRK15134 microcin C ABC transp 100.0 9.5E-41 2.1E-45 373.7 25.1 221 396-624 5-247 (529)
287 PRK13543 cytochrome c biogenes 100.0 1.1E-40 2.3E-45 329.7 22.0 197 396-609 11-212 (214)
288 TIGR01189 ccmA heme ABC export 100.0 7E-41 1.5E-45 327.1 20.1 194 397-606 1-197 (198)
289 TIGR02324 CP_lyasePhnL phospho 100.0 9.5E-41 2.1E-45 332.8 21.3 201 397-607 2-222 (224)
290 PRK10982 galactose/methyl gala 100.0 7.5E-41 1.6E-45 371.4 22.1 210 399-622 1-222 (491)
291 PLN03211 ABC transporter G-25; 100.0 1.7E-40 3.7E-45 376.2 25.3 201 412-623 81-296 (659)
292 PRK13546 teichoic acids export 100.0 1.8E-40 4E-45 337.0 22.5 215 396-634 4-243 (264)
293 COG1123 ATPase components of v 100.0 1.8E-40 4E-45 354.7 23.5 228 396-632 5-254 (539)
294 TIGR00955 3a01204 The Eye Pigm 100.0 3E-41 6.4E-46 382.7 18.0 217 396-623 17-256 (617)
295 TIGR02633 xylG D-xylose ABC tr 100.0 1.3E-40 2.8E-45 370.5 22.6 212 397-621 2-228 (500)
296 TIGR03771 anch_rpt_ABC anchore 100.0 1.3E-40 2.9E-45 331.1 20.0 195 420-632 1-209 (223)
297 TIGR03269 met_CoM_red_A2 methy 100.0 1.6E-40 3.5E-45 371.2 23.1 222 396-623 279-517 (520)
298 PRK13545 tagH teichoic acids e 100.0 4E-40 8.6E-45 353.5 24.5 213 396-632 21-241 (549)
299 PRK10535 macrolide transporter 100.0 3.6E-40 7.7E-45 375.5 25.3 216 396-622 4-231 (648)
300 PRK13541 cytochrome c biogenes 100.0 2E-40 4.4E-45 323.0 19.7 190 397-605 2-193 (195)
301 TIGR03269 met_CoM_red_A2 methy 100.0 2E-40 4.2E-45 370.6 22.1 213 397-623 1-258 (520)
302 TIGR01166 cbiO cobalt transpor 100.0 1.6E-40 3.4E-45 322.5 17.9 175 412-597 5-189 (190)
303 COG4181 Predicted ABC-type tra 100.0 2.7E-40 5.9E-45 296.7 17.6 209 396-615 6-227 (228)
304 COG4559 ABC-type hemin transpo 100.0 5.6E-40 1.2E-44 305.1 20.2 214 397-624 2-231 (259)
305 PRK13549 xylose transporter AT 100.0 2.9E-40 6.3E-45 367.8 21.4 217 396-622 259-493 (506)
306 COG4608 AppF ABC-type oligopep 100.0 3.7E-40 8E-45 322.5 19.1 194 397-632 5-209 (268)
307 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 6E-40 1.3E-44 326.4 20.2 195 397-616 23-224 (224)
308 COG0411 LivG ABC-type branched 100.0 2.2E-40 4.8E-45 316.9 15.7 214 397-624 5-240 (250)
309 TIGR01257 rim_protein retinal- 100.0 1.9E-37 4.2E-42 376.6 45.0 218 395-625 1936-2161(2272)
310 TIGR01257 rim_protein retinal- 100.0 2.2E-39 4.7E-44 393.5 26.4 217 395-624 927-1150(2272)
311 COG4172 ABC-type uncharacteriz 100.0 4.6E-39 1E-43 324.1 24.1 222 396-630 276-524 (534)
312 COG4598 HisP ABC-type histidin 100.0 3.5E-40 7.6E-45 298.0 13.8 215 396-624 6-242 (256)
313 PRK09700 D-allose transporter 100.0 1.7E-39 3.8E-44 362.1 21.9 210 396-620 265-495 (510)
314 COG1137 YhbG ABC-type (unclass 100.0 3E-40 6.4E-45 304.3 11.3 213 396-624 4-229 (243)
315 TIGR01187 potA spermidine/putr 100.0 3.3E-39 7.1E-44 338.0 19.3 182 430-624 1-191 (325)
316 TIGR02633 xylG D-xylose ABC tr 100.0 4.6E-39 9.9E-44 358.1 21.4 215 396-620 257-489 (500)
317 PRK15064 ABC transporter ATP-b 100.0 9.9E-39 2.1E-43 357.5 24.0 204 396-626 319-528 (530)
318 TIGR00956 3a01205 Pleiotropic 100.0 8.6E-39 1.9E-43 388.5 24.3 213 396-619 759-989 (1394)
319 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.3E-38 2.8E-43 320.4 20.7 194 404-622 1-206 (246)
320 PRK10762 D-ribose transporter 100.0 7.3E-39 1.6E-43 356.1 20.8 209 396-622 257-483 (501)
321 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.8E-39 8.2E-44 325.5 16.8 201 401-616 5-220 (255)
322 PRK15064 ABC transporter ATP-b 100.0 1.6E-38 3.4E-43 355.9 23.1 201 397-623 2-242 (530)
323 PRK11819 putative ABC transpor 100.0 1.6E-38 3.5E-43 357.0 23.1 210 396-623 6-250 (556)
324 PRK11288 araG L-arabinose tran 100.0 9.4E-39 2E-43 355.3 20.3 210 396-622 257-484 (501)
325 COG1129 MglA ABC-type sugar tr 100.0 7.6E-38 1.7E-42 332.5 25.1 208 396-617 8-228 (500)
326 COG4161 ArtP ABC-type arginine 100.0 1.6E-38 3.5E-43 282.3 16.6 215 396-624 2-231 (242)
327 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.2E-38 4.8E-43 355.8 22.2 210 396-623 4-248 (552)
328 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3E-38 6.4E-43 291.7 18.5 143 397-611 1-144 (144)
329 COG4525 TauB ABC-type taurine 100.0 1.7E-38 3.7E-43 291.1 16.5 205 397-618 4-219 (259)
330 PRK15177 Vi polysaccharide exp 100.0 2.8E-38 6.1E-43 311.7 19.0 192 414-628 2-197 (213)
331 COG4148 ModC ABC-type molybdat 100.0 1.6E-38 3.6E-43 306.5 16.3 197 416-624 15-219 (352)
332 PRK15439 autoinducer 2 ABC tra 100.0 3E-38 6.6E-43 351.5 19.8 210 396-623 268-492 (510)
333 PRK10938 putative molybdenum t 100.0 9.6E-38 2.1E-42 346.6 19.5 206 396-615 260-484 (490)
334 PRK10982 galactose/methyl gala 100.0 4.1E-37 8.8E-42 341.5 22.0 214 396-620 250-477 (491)
335 COG4604 CeuD ABC-type enteroch 100.0 9.6E-38 2.1E-42 286.7 13.3 213 397-624 2-226 (252)
336 PLN03073 ABC transporter F fam 100.0 2.4E-36 5.2E-41 344.2 24.3 199 396-621 508-712 (718)
337 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2E-36 4.4E-41 284.4 19.4 155 398-611 1-157 (157)
338 PRK11819 putative ABC transpor 100.0 2.8E-36 6E-41 339.0 23.8 203 396-624 324-534 (556)
339 PRK10636 putative ABC transpor 100.0 6.1E-36 1.3E-40 339.9 26.6 199 396-622 312-516 (638)
340 COG3845 ABC-type uncharacteriz 100.0 3.7E-36 8E-41 312.8 22.1 206 396-615 4-221 (501)
341 PRK11147 ABC transporter ATPas 100.0 6.2E-36 1.4E-40 340.6 24.4 200 396-622 319-527 (635)
342 cd03222 ABC_RNaseL_inhibitor T 100.0 2E-36 4.3E-41 287.5 16.8 145 400-613 4-151 (177)
343 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6E-36 1.3E-40 336.2 23.6 202 396-623 322-531 (552)
344 PRK13409 putative ATPase RIL; 100.0 4.2E-36 9E-41 336.4 22.1 193 396-618 340-537 (590)
345 PLN03140 ABC transporter G fam 100.0 6.7E-36 1.5E-40 361.9 25.4 214 396-619 867-1106(1470)
346 cd03238 ABC_UvrA The excision 100.0 1.4E-35 3.1E-40 281.3 18.6 156 411-611 7-165 (176)
347 PRK10636 putative ABC transpor 100.0 2.7E-35 5.8E-40 334.7 23.8 201 397-623 2-236 (638)
348 COG1101 PhnK ABC-type uncharac 100.0 1.7E-35 3.7E-40 275.9 14.8 205 411-617 18-232 (263)
349 PRK11147 ABC transporter ATPas 100.0 1.7E-34 3.6E-39 329.0 23.2 207 397-623 4-243 (635)
350 COG4167 SapF ABC-type antimicr 100.0 8.6E-35 1.9E-39 263.7 16.2 230 397-638 5-256 (267)
351 COG4172 ABC-type uncharacteriz 100.0 1.7E-34 3.6E-39 291.3 19.8 226 397-633 7-258 (534)
352 TIGR00956 3a01205 Pleiotropic 100.0 7.1E-35 1.5E-39 354.4 20.6 202 412-621 74-298 (1394)
353 COG1119 ModF ABC-type molybden 100.0 3.5E-34 7.5E-39 274.3 18.5 208 396-617 31-256 (257)
354 PLN03140 ABC transporter G fam 100.0 1E-34 2.2E-39 351.6 18.0 208 412-622 178-426 (1470)
355 KOG0064 Peroxisomal long-chain 100.0 3.1E-30 6.8E-35 267.3 46.7 502 74-607 122-681 (728)
356 PRK13409 putative ATPase RIL; 100.0 1.8E-34 3.9E-39 323.3 15.9 192 401-610 78-287 (590)
357 COG4152 ABC-type uncharacteriz 100.0 5.1E-34 1.1E-38 270.7 16.3 215 396-625 2-221 (300)
358 COG4136 ABC-type uncharacteriz 100.0 9.2E-34 2E-38 249.1 14.8 196 396-607 2-207 (213)
359 COG1134 TagH ABC-type polysacc 100.0 5.6E-33 1.2E-37 266.5 20.5 190 411-624 39-237 (249)
360 COG0488 Uup ATPase components 100.0 3.9E-33 8.4E-38 304.6 20.4 209 396-624 3-241 (530)
361 PLN03073 ABC transporter F fam 100.0 3.5E-33 7.6E-38 318.3 20.1 221 396-623 177-431 (718)
362 PF00005 ABC_tran: ABC transpo 100.0 9.9E-34 2.1E-38 259.9 11.5 136 415-565 1-137 (137)
363 KOG0061 Transporter, ABC super 100.0 1.9E-32 4.2E-37 307.4 21.3 219 395-623 24-260 (613)
364 COG0396 sufC Cysteine desulfur 100.0 1.1E-31 2.4E-36 254.0 21.2 216 396-623 3-233 (251)
365 COG4674 Uncharacterized ABC-ty 100.0 3.6E-32 7.8E-37 249.7 15.0 215 396-624 5-236 (249)
366 cd03270 ABC_UvrA_I The excisio 100.0 1.4E-31 3.1E-36 266.3 16.6 191 411-616 7-226 (226)
367 COG0488 Uup ATPase components 100.0 1.8E-30 3.9E-35 283.6 26.4 203 395-624 320-526 (530)
368 COG4107 PhnK ABC-type phosphon 100.0 3.3E-31 7.1E-36 238.6 15.5 228 396-634 6-253 (258)
369 COG4133 CcmA ABC-type transpor 100.0 1.4E-31 3E-36 245.4 13.2 190 397-601 3-196 (209)
370 cd03271 ABC_UvrA_II The excisi 100.0 1.5E-31 3.2E-36 268.8 14.6 194 414-618 10-261 (261)
371 COG4586 ABC-type uncharacteriz 100.0 6.9E-31 1.5E-35 253.4 13.8 208 412-629 37-252 (325)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 2.2E-30 4.7E-35 251.8 13.7 164 416-609 14-190 (197)
373 COG4778 PhnL ABC-type phosphon 100.0 1.9E-29 4.2E-34 226.5 11.9 203 397-609 5-227 (235)
374 cd03272 ABC_SMC3_euk Eukaryoti 100.0 3.2E-29 6.9E-34 253.0 13.8 192 396-608 3-234 (243)
375 PF00664 ABC_membrane: ABC tra 100.0 1.6E-25 3.6E-30 227.1 40.3 273 73-351 2-275 (275)
376 cd03279 ABC_sbcCD SbcCD and ot 100.0 3.2E-29 6.9E-34 247.4 11.6 191 396-611 5-210 (213)
377 KOG0059 Lipid exporter ABCA1 a 99.9 1.9E-25 4E-30 261.8 33.6 220 395-627 563-791 (885)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.9 4.2E-27 9.1E-32 238.4 12.6 187 425-611 25-247 (251)
379 KOG0927 Predicted transporter 99.9 2.6E-27 5.6E-32 247.7 11.0 198 396-618 389-591 (614)
380 cd03240 ABC_Rad50 The catalyti 99.9 7.9E-27 1.7E-31 228.2 12.6 162 419-609 17-197 (204)
381 cd03274 ABC_SMC4_euk Eukaryoti 99.9 3.8E-27 8.2E-32 231.6 10.0 185 396-609 5-204 (212)
382 COG4138 BtuD ABC-type cobalami 99.9 1.1E-27 2.4E-32 216.1 5.3 209 397-624 4-222 (248)
383 PRK00349 uvrA excinuclease ABC 99.9 2.9E-26 6.2E-31 265.3 18.3 104 525-628 818-932 (943)
384 PRK00635 excinuclease ABC subu 99.9 9.9E-26 2.1E-30 270.8 21.0 213 396-625 600-908 (1809)
385 COG1129 MglA ABC-type sugar tr 99.9 2.4E-25 5.3E-30 237.2 18.3 217 396-620 263-487 (500)
386 KOG0065 Pleiotropic drug resis 99.9 5.7E-26 1.2E-30 259.8 12.8 200 411-620 803-1018(1391)
387 cd03275 ABC_SMC1_euk Eukaryoti 99.9 9E-26 2E-30 227.9 10.4 184 426-609 23-233 (247)
388 TIGR00630 uvra excinuclease AB 99.9 2.2E-24 4.8E-29 249.2 20.0 97 525-621 816-923 (924)
389 COG3845 ABC-type uncharacteriz 99.9 3.1E-23 6.8E-28 216.5 20.6 215 395-620 256-489 (501)
390 KOG0062 ATPase component of AB 99.9 2.8E-23 6E-28 216.5 17.2 212 395-638 361-577 (582)
391 KOG0927 Predicted transporter 99.9 2.4E-23 5.2E-28 218.1 13.6 218 395-624 74-310 (614)
392 KOG0066 eIF2-interacting prote 99.9 3E-23 6.5E-28 210.9 13.6 198 396-620 586-788 (807)
393 cd03276 ABC_SMC6_euk Eukaryoti 99.9 6.7E-23 1.4E-27 199.4 11.9 169 416-611 13-192 (198)
394 KOG0062 ATPase component of AB 99.9 1.1E-22 2.5E-27 212.0 10.0 201 395-623 79-285 (582)
395 cd03239 ABC_SMC_head The struc 99.9 6.9E-22 1.5E-26 188.8 13.5 85 519-609 83-172 (178)
396 COG1245 Predicted ATPase, RNas 99.9 1.6E-21 3.5E-26 200.2 15.7 170 414-608 351-530 (591)
397 cd01128 rho_factor Transcripti 99.9 2.9E-22 6.3E-27 200.1 6.2 196 420-633 11-227 (249)
398 KOG2355 Predicted ABC-type tra 99.9 1.5E-20 3.3E-25 174.3 15.6 212 394-622 11-236 (291)
399 COG0178 UvrA Excinuclease ATPa 99.8 2.9E-20 6.2E-25 203.3 16.1 103 529-631 815-927 (935)
400 cd03280 ABC_MutS2 MutS2 homolo 99.8 1E-20 2.3E-25 184.8 11.5 145 415-616 17-172 (200)
401 cd03277 ABC_SMC5_euk Eukaryoti 99.8 1E-20 2.3E-25 186.0 10.6 180 416-611 15-211 (213)
402 KOG0065 Pleiotropic drug resis 99.8 1.2E-20 2.5E-25 216.7 12.0 207 412-623 128-351 (1391)
403 cd03241 ABC_RecN RecN ATPase i 99.8 5.7E-20 1.2E-24 188.6 15.3 76 536-611 170-249 (276)
404 COG4170 SapD ABC-type antimicr 99.8 2.8E-19 6.1E-24 166.3 14.8 208 412-630 20-256 (330)
405 COG2401 ABC-type ATPase fused 99.8 4.5E-19 9.8E-24 180.2 15.1 199 392-613 353-588 (593)
406 PRK00635 excinuclease ABC subu 99.8 4E-19 8.8E-24 214.3 17.0 202 414-626 1505-1799(1809)
407 cd03227 ABC_Class2 ABC-type Cl 99.8 4.4E-19 9.6E-24 167.3 10.0 135 419-609 15-155 (162)
408 COG1245 Predicted ATPase, RNas 99.8 1.8E-18 3.9E-23 178.0 10.9 190 401-608 79-287 (591)
409 cd03285 ABC_MSH2_euk MutS2 hom 99.8 2.6E-18 5.6E-23 170.0 9.9 153 411-617 16-175 (222)
410 cd03242 ABC_RecF RecF is a rec 99.7 1E-17 2.2E-22 171.4 13.7 190 416-612 13-269 (270)
411 TIGR00630 uvra excinuclease AB 99.7 1.8E-17 3.9E-22 192.2 13.5 95 530-624 481-584 (924)
412 cd00820 PEPCK_HprK Phosphoenol 99.7 4.6E-18 1E-22 145.8 5.7 75 413-495 3-77 (107)
413 PRK00349 uvrA excinuclease ABC 99.7 2E-17 4.3E-22 192.1 12.8 100 525-624 477-586 (943)
414 cd03243 ABC_MutS_homologs The 99.7 4.8E-17 1E-21 159.3 10.2 153 418-621 22-177 (202)
415 cd03283 ABC_MutS-like MutS-lik 99.7 4.8E-17 1E-21 158.2 8.9 141 412-607 14-163 (199)
416 TIGR00606 rad50 rad50. This fa 99.7 2E-16 4.4E-21 193.8 14.1 118 484-607 1153-1288(1311)
417 TIGR02858 spore_III_AA stage I 99.6 3.6E-16 7.7E-21 158.2 9.6 142 426-622 112-268 (270)
418 KOG0066 eIF2-interacting prote 99.6 1.7E-15 3.7E-20 154.8 8.3 197 396-618 264-494 (807)
419 PRK00064 recF recombination pr 99.6 2.7E-14 5.9E-19 151.8 16.3 76 535-612 272-359 (361)
420 cd03284 ABC_MutS1 MutS1 homolo 99.6 7.5E-15 1.6E-19 144.8 10.0 154 412-621 18-179 (216)
421 PF02463 SMC_N: RecF/RecN/SMC 99.6 9.7E-15 2.1E-19 145.1 9.3 171 417-607 17-211 (220)
422 cd03282 ABC_MSH4_euk MutS4 hom 99.6 2.4E-14 5.3E-19 139.6 11.7 141 411-602 15-158 (204)
423 KOG0063 RNAse L inhibitor, ABC 99.5 5.1E-14 1.1E-18 144.2 12.3 196 403-623 342-548 (592)
424 PHA02562 46 endonuclease subun 99.5 1.5E-14 3.2E-19 164.1 8.2 106 505-612 432-555 (562)
425 PRK07721 fliI flagellum-specif 99.5 1.2E-12 2.7E-17 140.8 16.2 177 412-620 146-340 (438)
426 cd03281 ABC_MSH5_euk MutS5 hom 99.4 3.4E-12 7.4E-17 125.6 12.8 136 413-602 17-161 (213)
427 TIGR00634 recN DNA repair prot 99.4 1.4E-12 3E-17 146.9 9.2 77 535-611 439-519 (563)
428 PTZ00132 GTP-binding nuclear p 99.3 2.1E-12 4.5E-17 127.8 9.0 43 540-582 156-203 (215)
429 PRK10869 recombination and rep 99.3 3.5E-12 7.6E-17 142.4 10.1 76 536-611 430-509 (553)
430 smart00534 MUTSac ATPase domai 99.3 1.7E-12 3.8E-17 125.1 6.5 69 532-603 57-130 (185)
431 TIGR01069 mutS2 MutS2 family p 99.3 5.8E-12 1.3E-16 145.2 11.6 151 396-599 295-449 (771)
432 COG0178 UvrA Excinuclease ATPa 99.3 1.1E-11 2.4E-16 136.7 12.1 154 453-625 413-579 (935)
433 PRK11098 microcin B17 transpor 99.3 4.9E-08 1.1E-12 103.8 38.9 282 82-380 104-398 (409)
434 PRK13695 putative NTPase; Prov 99.3 2E-12 4.4E-17 123.5 5.2 80 533-615 75-156 (174)
435 PRK12369 putative transporter; 99.3 8.9E-08 1.9E-12 99.8 39.4 283 79-377 26-321 (326)
436 PRK14079 recF recombination pr 99.3 6.6E-11 1.4E-15 125.2 15.2 76 535-615 262-346 (349)
437 cd03287 ABC_MSH3_euk MutS3 hom 99.3 1.3E-11 2.8E-16 121.7 8.9 138 412-601 18-160 (222)
438 PF06472 ABC_membrane_2: ABC t 99.3 5.7E-08 1.2E-12 100.0 36.0 226 76-311 33-263 (281)
439 TIGR02788 VirB11 P-type DNA tr 99.2 1.7E-11 3.8E-16 127.7 8.5 143 418-622 137-280 (308)
440 KOG0063 RNAse L inhibitor, ABC 99.2 2.1E-11 4.5E-16 125.3 7.9 171 423-608 98-287 (592)
441 PRK08533 flagellar accessory p 99.2 1.3E-10 2.9E-15 115.7 13.3 144 422-608 21-184 (230)
442 PRK10733 hflB ATP-dependent me 99.2 5.1E-12 1.1E-16 143.9 -0.1 175 242-450 28-210 (644)
443 PRK00409 recombination and DNA 99.1 4E-10 8.8E-15 130.4 14.7 80 532-613 386-468 (782)
444 TIGR03238 dnd_assoc_3 dnd syst 99.1 3.6E-11 7.7E-16 127.9 4.6 67 413-482 20-87 (504)
445 PRK01156 chromosome segregatio 99.1 1.4E-10 3.1E-15 138.5 10.1 76 533-608 798-883 (895)
446 cd01124 KaiC KaiC is a circadi 99.1 6.1E-10 1.3E-14 107.5 11.4 142 428-609 2-164 (187)
447 PRK03918 chromosome segregatio 99.1 2.5E-10 5.3E-15 136.5 9.5 75 535-609 787-868 (880)
448 PF13748 ABC_membrane_3: ABC t 99.1 7.1E-07 1.5E-11 86.5 31.0 213 63-310 3-215 (237)
449 cd01131 PilT Pilus retraction 99.0 5.9E-10 1.3E-14 108.6 9.0 118 427-607 3-121 (198)
450 TIGR02168 SMC_prok_B chromosom 99.0 3E-10 6.5E-15 140.1 8.4 75 533-607 1086-1164(1179)
451 PRK06793 fliI flagellum-specif 99.0 2.2E-09 4.8E-14 114.8 13.2 168 396-617 130-305 (432)
452 TIGR00618 sbcc exonuclease Sbc 99.0 1E-09 2.2E-14 132.7 10.5 77 534-610 948-1036(1042)
453 PRK13830 conjugal transfer pro 99.0 4E-09 8.8E-14 123.5 14.4 68 551-618 649-728 (818)
454 cd01120 RecA-like_NTPases RecA 99.0 5E-09 1.1E-13 98.2 11.8 129 427-598 1-140 (165)
455 TIGR00767 rho transcription te 98.9 2.2E-09 4.9E-14 112.6 9.4 83 363-452 102-195 (415)
456 smart00382 AAA ATPases associa 98.9 3.8E-08 8.3E-13 89.1 16.4 117 424-594 1-125 (148)
457 PRK00300 gmk guanylate kinase; 98.9 1.4E-09 3.1E-14 106.7 7.2 80 423-512 3-94 (205)
458 TIGR02169 SMC_prok_A chromosom 98.9 1.6E-09 3.4E-14 133.6 9.2 86 524-609 1056-1151(1164)
459 cd03286 ABC_MSH6_euk MutS6 hom 98.9 7.5E-09 1.6E-13 101.9 10.3 139 411-601 16-159 (218)
460 PRK06067 flagellar accessory p 98.8 4.4E-08 9.5E-13 98.3 14.1 153 421-609 21-187 (234)
461 PRK06002 fliI flagellum-specif 98.8 1.8E-08 3.8E-13 108.1 9.9 85 395-482 138-229 (450)
462 PRK02224 chromosome segregatio 98.8 9.2E-09 2E-13 123.0 8.5 76 535-610 780-869 (880)
463 PF13304 AAA_21: AAA domain; P 98.8 1.2E-08 2.6E-13 102.9 7.6 63 536-598 236-302 (303)
464 PRK10246 exonuclease subunit S 98.8 1.7E-08 3.8E-13 121.4 9.2 75 534-608 947-1031(1047)
465 COG3910 Predicted ATPase [Gene 98.7 1.6E-07 3.5E-12 87.2 11.3 84 536-621 129-214 (233)
466 PRK01889 GTPase RsgA; Reviewed 98.7 1.4E-08 3E-13 107.8 4.9 134 415-554 185-321 (356)
467 PF09818 ABC_ATPase: Predicted 98.7 1.7E-07 3.7E-12 98.6 12.7 171 402-612 227-416 (448)
468 cd01125 repA Hexameric Replica 98.7 4.8E-08 1E-12 98.3 7.5 45 550-595 107-159 (239)
469 TIGR01420 pilT_fam pilus retra 98.6 7.9E-08 1.7E-12 101.8 8.6 122 422-606 119-241 (343)
470 PRK13891 conjugal transfer pro 98.6 8.7E-07 1.9E-11 104.5 16.9 54 547-600 680-735 (852)
471 cd01130 VirB11-like_ATPase Typ 98.6 8.6E-08 1.9E-12 92.5 6.5 79 414-495 14-95 (186)
472 TIGR00611 recf recF protein. A 98.6 7.8E-08 1.7E-12 102.3 6.1 63 535-599 274-345 (365)
473 PRK07196 fliI flagellum-specif 98.6 5.3E-08 1.2E-12 104.4 4.7 83 412-495 143-235 (434)
474 PRK06995 flhF flagellar biosyn 98.5 5.9E-08 1.3E-12 105.5 4.1 145 419-597 250-404 (484)
475 PRK08149 ATP synthase SpaL; Va 98.5 1.9E-07 4.1E-12 100.0 7.4 99 412-529 139-244 (428)
476 TIGR00101 ureG urease accessor 98.5 1.9E-07 4.1E-12 90.9 6.5 106 427-541 3-108 (199)
477 PF05992 SbmA_BacA: SbmA/BacA- 98.5 0.0019 4.2E-08 65.6 34.5 240 121-375 59-311 (315)
478 TIGR02524 dot_icm_DotB Dot/Icm 98.5 2E-07 4.4E-12 98.6 6.5 89 423-513 132-234 (358)
479 TIGR01026 fliI_yscN ATPase Fli 98.5 1.1E-06 2.3E-11 95.2 12.2 176 412-620 151-345 (440)
480 cd02023 UMPK Uridine monophosp 98.4 1.3E-07 2.8E-12 92.3 4.1 109 427-570 1-114 (198)
481 TIGR02655 circ_KaiC circadian 98.4 4.7E-08 1E-12 108.3 0.9 156 421-608 17-190 (484)
482 PRK10078 ribose 1,5-bisphospho 98.3 6.1E-07 1.3E-11 86.6 5.6 56 424-482 1-56 (186)
483 TIGR00235 udk uridine kinase. 98.3 5.7E-07 1.2E-11 88.4 4.6 29 423-451 4-32 (207)
484 PRK13898 type IV secretion sys 98.3 2.7E-05 5.9E-10 91.9 18.7 189 417-609 438-709 (800)
485 PLN02796 D-glycerate 3-kinase 98.2 4.5E-07 9.8E-12 94.0 2.5 61 413-473 80-151 (347)
486 TIGR03881 KaiC_arch_4 KaiC dom 98.2 1.4E-06 3.1E-11 86.9 6.0 40 421-460 16-56 (229)
487 PRK09825 idnK D-gluconate kina 98.2 1.1E-06 2.5E-11 83.8 4.9 53 424-482 2-55 (176)
488 TIGR03263 guanyl_kin guanylate 98.2 7.5E-07 1.6E-11 85.4 3.6 78 425-512 1-90 (180)
489 PLN03210 Resistant to P. syrin 98.2 3.1E-06 6.7E-11 103.7 9.6 43 418-460 200-243 (1153)
490 cd00009 AAA The AAA+ (ATPases 98.2 1.1E-05 2.5E-10 73.3 11.0 54 542-596 72-131 (151)
491 TIGR02680 conserved hypothetic 98.2 2E-06 4.3E-11 106.0 7.7 62 533-596 1244-1317(1353)
492 COG0419 SbcC ATPase involved i 98.2 3.1E-06 6.8E-11 101.2 9.0 77 534-610 813-898 (908)
493 TIGR02322 phosphon_PhnN phosph 98.2 2.4E-06 5.3E-11 81.8 6.6 61 425-486 1-77 (179)
494 PTZ00035 Rad51 protein; Provis 98.2 6.6E-06 1.4E-10 86.6 10.2 82 421-510 114-202 (337)
495 PRK15494 era GTPase Era; Provi 98.2 9.8E-07 2.1E-11 93.3 4.0 57 391-449 13-76 (339)
496 TIGR02903 spore_lon_C ATP-depe 98.2 6.1E-06 1.3E-10 93.8 10.7 109 425-581 175-291 (615)
497 PRK06315 type III secretion sy 98.2 1.4E-06 2.9E-11 93.9 4.8 102 413-516 153-277 (442)
498 PRK05480 uridine/cytidine kina 98.2 2.8E-06 6.1E-11 83.6 6.6 69 423-512 4-77 (209)
499 cd00071 GMPK Guanosine monopho 98.2 8.4E-07 1.8E-11 81.0 2.7 74 428-511 2-88 (137)
500 cd01123 Rad51_DMC1_radA Rad51_ 98.2 7.1E-06 1.5E-10 82.2 9.6 82 421-510 15-103 (235)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-122 Score=993.05 Aligned_cols=574 Identities=54% Similarity=0.879 Sum_probs=549.2
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 57 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 136 (643)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (643)
.+++++.+.+++++.+..++++.++..+..+..|++++.++|.+....+ ....+...+..+.++++.++++..
T Consensus 134 ~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~-------~~~~~~~~~~~l~~l~~~~a~~~~ 206 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDD-------SADALKRACTILLGLFLIGALANA 206 (716)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999876211 133445567777888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 137 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFAT 216 (643)
Q Consensus 137 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (643)
++.+++...++++..++|.++|++++++++.|||++.+||+++|+++|+..+.+.+...+...+.+.++.++++.+|+++
T Consensus 207 ~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~ 286 (716)
T KOG0058|consen 207 IRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSL 286 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 006489 217 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 296 (643)
Q Consensus 217 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (643)
+|.++++.++.+|+++++..+++++.+++.++.+++.++.++...|.+.+|||||+|+.|+.+.+||.+..++.++...|
T Consensus 287 S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k 366 (716)
T KOG0058|consen 287 SWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKK 366 (716)
T ss_pred hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006489 297 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLD 376 (643)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~ 376 (643)
.....+++++..++...+..+.++++|++++..|.+|.|.+.+|+.|...+..++..++.+++.++++..+.+|++++++
T Consensus 367 ~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~d 446 (716)
T KOG0058|consen 367 EAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMD 446 (716)
T ss_pred HHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE
Q 006489 377 RVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 456 (643)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I 456 (643)
++|..+..+...|. ...|.|+|+||+|+||.+|+.+||+|+||+|+|||.||+||||||||||++++|+++|+|++|+|
T Consensus 447 r~P~i~~~G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 447 RKPRIPLTGTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred cCCCCCCCCccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 98877655444444 56789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 006489 457 LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 536 (643)
Q Consensus 457 ~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~ 536 (643)
++||+||++++..+||++||+|.|||.||++||+|||.||.+ ++++|++++|++.|++|+||.++|+||||.|||+|..
T Consensus 526 llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~q 604 (716)
T KOG0058|consen 526 LLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQ 604 (716)
T ss_pred EECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCcccc
Confidence 999999999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEc
Q 006489 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 616 (643)
Q Consensus 537 LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G 616 (643)
|||||||||||||||+|||.||||||||||||+++|..|+++|.+.++++|||+|||||+|+++||+|+|+++|+|+|.|
T Consensus 605 LSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 605 LSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMG 684 (716)
T ss_pred ccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhhcC-ChHHHHHHHHhcCC
Q 006489 617 THEELLSKG-GVYTALVKRQLQEP 639 (643)
Q Consensus 617 ~~~eL~~~~-g~y~~l~~~q~~~~ 639 (643)
+|+||++++ |.|++|+++|.-..
T Consensus 685 ~h~eLl~~~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 685 THDELLSKPNGLYAKLVQRQLDSG 708 (716)
T ss_pred cHHHHhhCcccHHHHHHHHhcccC
Confidence 999999975 89999999997543
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.6e-114 Score=969.69 Aligned_cols=607 Identities=33% Similarity=0.518 Sum_probs=569.4
Q ss_pred CCCcceeccCCCCccccCCCC-----CCccccccCCCC---CCccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006489 18 GGERAPLLDHGGRRKRNDASE-----NGNVTDLEHGDA---VPAANVGFGRVLALAKPDAGKLIIATVALLIASVSSILI 89 (643)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (643)
.++++.+.||+.|.+..+..| +|....++|.++ .+..+..+.+++..++.+++.+.-.++.+++..+++++.
T Consensus 94 ~~~~~~v~dp~~g~~~l~~~e~~~~~tg~~l~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~ 173 (709)
T COG2274 94 DKNKVVVLDPAKGIRRLSLEEFEKLWTGIALLLAPTASRKFKDIPPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALAT 173 (709)
T ss_pred cCCeEEEEeCCCCcEEcCHHHHHHhhheeEEEEecccccccccccccchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345889999999888876433 556666666533 122445678899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhh
Q 006489 90 PKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFY 169 (643)
Q Consensus 90 p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~ 169 (643)
|++++.++|.+..... ...++.+.++++++.++..++..+|.++..+++.|+..++..++|+|++++|+.||
T Consensus 174 p~~~q~viD~Vl~~~~--------~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f 245 (709)
T COG2274 174 PLFSQIVIDKVLPDAS--------RSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYF 245 (709)
T ss_pred HHHHHHHHHhhhccCc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHc
Confidence 9999999999986543 45566677788888899999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 170 DVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKT 249 (643)
Q Consensus 170 ~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~ 249 (643)
+++++||+++|+. |.++++++++......+.+++++++++++|++++|++++++++.+|+++++..++.+..++..++.
T Consensus 246 ~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~ 324 (709)
T COG2274 246 EKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKL 324 (709)
T ss_pred cCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999996 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006489 250 QAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTIT 329 (643)
Q Consensus 250 ~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~ 329 (643)
.+..++.++.+.|+++|+++||+.+.|.++..+|++...+..+...+..+.........+++..++.++++|+|+++|++
T Consensus 325 ~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~ 404 (709)
T COG2274 325 IEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLE 404 (709)
T ss_pred HHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCC
Q 006489 330 GSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSR 409 (643)
Q Consensus 330 g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~ 409 (643)
|.+|+|.+++|.++...+..|+..+.+++..+++++.+.+|+.++++.|+|...+......++..|+|+|+||+|+|+.+
T Consensus 405 ~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~ 484 (709)
T COG2274 405 GELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD 484 (709)
T ss_pred CCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999998865443333445567899999999999876
Q ss_pred CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccH
Q 006489 410 PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSI 489 (643)
Q Consensus 410 ~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTi 489 (643)
++++|+|+||+|++||+|||||+||||||||+|+|+|+|+|++|+|++||.|+.+++++++|++|+||+||+.||+|||
T Consensus 485 -~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI 563 (709)
T COG2274 485 -DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSI 563 (709)
T ss_pred -CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcH
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCH
Q 006489 490 EENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDA 569 (643)
Q Consensus 490 reNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~ 569 (643)
||||++++| +.++|++++||+.+++|+||++||+||||+|||+|.+|||||||||+|||||+++|+||||||||||||+
T Consensus 564 ~eNi~l~~p-~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~ 642 (709)
T COG2274 564 RENIALGNP-EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDP 642 (709)
T ss_pred HHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCH
Confidence 999999998 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHHHH
Q 006489 570 ESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 635 (643)
Q Consensus 570 ~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~q 635 (643)
+||++|.++|.+..++||+|+||||++++++||+|+|||+|+|+|+|+|+||++.+|.|++++..|
T Consensus 643 ~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~q 708 (709)
T COG2274 643 ETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ 708 (709)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999876
No 3
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.2e-110 Score=945.94 Aligned_cols=577 Identities=38% Similarity=0.603 Sum_probs=537.9
Q ss_pred cchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 54 ANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSV 133 (643)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (643)
.+..+.+++++.++.|+.++++.+.+++.....++..++++.++..+....++. .......|.++++++.+...+
T Consensus 648 ~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~-----~~~~~~~~al~f~~l~~~~~i 722 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDE-----LKREVRAWALIFLGLGIVSGI 722 (1228)
T ss_pred ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 355788999999999999999999999999999999999999998776432211 111112266777788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 134 CTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDV-TRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGF 212 (643)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 212 (643)
...++.|++..+++++..++|..+|+++++++..|||. .++|.+.+|+.+|...++..+...+..++.++..+++++++
T Consensus 723 ~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iii 802 (1228)
T KOG0055|consen 723 TNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIII 802 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987 23499999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHH
Q 006489 213 MFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLK 292 (643)
Q Consensus 213 l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 292 (643)
.|+++|.++++++++.|++++......+.+.....+..++.++..+...|+++|||||++|+.|+++.+.|.+..++..+
T Consensus 803 af~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~ 882 (1228)
T KOG0055|consen 803 AFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRK 882 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 293 LGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVF 372 (643)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~ 372 (643)
...++..+.++.+++.+.+.++..++.+|+|.+++.+|.+++.+++-.+..+..-...+.......+++.+++.++.+++
T Consensus 883 ~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF 962 (1228)
T KOG0055|consen 883 SSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIF 962 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988887777777788888899999999999999999
Q ss_pred HHhcccCCCCCCC-CCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC
Q 006489 373 QLLDRVSSMPKSG-NQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP 451 (643)
Q Consensus 373 ~~l~~~~~~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p 451 (643)
+++++++..+.+. .....+..+|+|+|+||+|+||.+|+.++|+|+||+|++||++||||||||||||++.+|.|+|+|
T Consensus 963 ~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp 1042 (1228)
T KOG0055|consen 963 EILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP 1042 (1228)
T ss_pred HHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 9999988554322 222233467899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCccccccc
Q 006489 452 IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVG 531 (643)
Q Consensus 452 ~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vg 531 (643)
++|.|.|||+|++++++++||++||.|+|||.||++||||||+||.+ +++++|+.+|++.|++|+||.+||+||||.||
T Consensus 1043 ~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1043 DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVG 1121 (1228)
T ss_pred CCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccC
Confidence 99999999999999999999999999999999999999999999965 59999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCE
Q 006489 532 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGE 611 (643)
Q Consensus 532 e~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~ 611 (643)
|+|.+||||||||||||||++|||+||||||||||||+++|+.|+++|++.+.+||+|+|||||+|+++||.|.|++||+
T Consensus 1122 erG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~ 1201 (1228)
T KOG0055|consen 1122 ERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGK 1201 (1228)
T ss_pred cccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcChhHHhhcCChHHHHHHHHh
Q 006489 612 IVESGTHEELLSKGGVYTALVKRQL 636 (643)
Q Consensus 612 Ive~G~~~eL~~~~g~y~~l~~~q~ 636 (643)
|+|+|||+||++++|.|++|++.|.
T Consensus 1202 VvE~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1202 VVEQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred EEecccHHHHHhCCCchHHHhhhcc
Confidence 9999999999999999999999875
No 4
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.9e-103 Score=903.20 Aligned_cols=600 Identities=25% Similarity=0.382 Sum_probs=540.4
Q ss_pred CCCcceeccCCCCcc-ccCCCC----CCccccccCCCCCCccchhHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 18 GGERAPLLDHGGRRK-RNDASE----NGNVTDLEHGDAVPAANVGFGRVLAL-AKPDAGKLIIATVALLIASVSSILIPK 91 (643)
Q Consensus 18 ~~~~~~l~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ 91 (643)
.++++.++||+.|++ ..+..| +|....+.|+ ++.....+++++++ ++++++.+...++++++..++.++.|+
T Consensus 80 ~~~~~~i~dP~~g~~~~~~~~e~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~ 157 (686)
T TIGR03797 80 SRGGYEIFDPATGTRRRVDAAMAATLAPEAYMFYRP--LPDKALGLRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPI 157 (686)
T ss_pred cCCEEEEECCCCCCCcccCHHHHHhcCCEEEEEecC--CccccccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999986 444221 4554455444 22223446666666 688889999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcc
Q 006489 92 FGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDV 171 (643)
Q Consensus 92 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~ 171 (643)
+++.++|.+..... ...++.++++++++.++..++.+++.++..+++.++..++|..+|+|++++|+.+|++
T Consensus 158 ~~~~iid~v~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~ 229 (686)
T TIGR03797 158 ATGILIGTAIPDAD--------RSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQ 229 (686)
T ss_pred HHHHHHHHhhhcCC--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC
Confidence 99999998864322 2233445556666777788899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 172 TRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQA 251 (643)
Q Consensus 172 ~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 251 (643)
+++|++++|++ |++.+++++...+...+.+.+.+++++++++.++|++++++++++++++++..++.+..++..++..+
T Consensus 230 ~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (686)
T TIGR03797 230 YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLE 308 (686)
T ss_pred CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 79999999998888888888888899999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 006489 252 AAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGS 331 (643)
Q Consensus 252 ~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~ 331 (643)
..++..+.+.|.++|+++||+++.|+.+.++|++..++..+...+..+...+...+..++..+..++++++|++++.+|.
T Consensus 309 ~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ 388 (686)
T TIGR03797 309 LSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAG 388 (686)
T ss_pred HHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999998888888888888889999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCC
Q 006489 332 MTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPN 411 (643)
Q Consensus 332 lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~ 411 (643)
+|+|.++++.+++..+..|+..+...+..+++++.+.+|+.++++.+++..... . ......+.|+|+||+|+|++. +
T Consensus 389 ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-~-~~~~~~~~I~~~nvsf~Y~~~-~ 465 (686)
T TIGR03797 389 LSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK-T-DPGKLSGAIEVDRVTFRYRPD-G 465 (686)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc-C-CCCCCCceEEEEEEEEEcCCC-C
Confidence 999999999999999999999999999999999999999999998766543221 1 112234679999999999754 4
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHH
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEE 491 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTire 491 (643)
+++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+++++++++|++|+||||||+||+|||||
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~e 545 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFE 545 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHH
Q 006489 492 NIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAES 571 (643)
Q Consensus 492 NI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~t 571 (643)
||++++| ++++++++|++.|+++++|+++|+||||+|||+|.+|||||||||+||||++++|+|||||||||+||+++
T Consensus 546 Ni~~~~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~t 623 (686)
T TIGR03797 546 NIAGGAP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623 (686)
T ss_pred HHhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 9999965 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHHHH
Q 006489 572 EYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 635 (643)
Q Consensus 572 e~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~q 635 (643)
|+.+.++|++. ++|+|+||||+++++.||+|+||++|+|+|+|+|+||++++|.|+++++.|
T Consensus 624 e~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~q 685 (686)
T TIGR03797 624 QAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLARRQ 685 (686)
T ss_pred HHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHhc
Confidence 99999999886 689999999999999999999999999999999999999999999999876
No 5
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.5e-103 Score=890.04 Aligned_cols=570 Identities=22% Similarity=0.338 Sum_probs=505.4
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 57 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 136 (643)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (643)
.+++++++++++++.+++++++.++..++.++.|++++.++|.+.....+ ...+..++++++++.++..++.+
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 81 (588)
T PRK11174 9 LTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-------REALLPPFILLILLFVLRALLAW 81 (588)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999999999999999999999999999987521111 11122334455556667888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 137 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFAT 216 (643)
Q Consensus 137 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (643)
++.++..+.+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++...+..++.+++.+++++++++++
T Consensus 82 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (588)
T PRK11174 82 LRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPI 161 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988999999998999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 006489 217 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 296 (643)
Q Consensus 217 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (643)
+|++++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+
T Consensus 162 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 241 (588)
T PRK11174 162 NWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTME 241 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888889999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 297 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGAL---------TSFILYSLTVGSSVSGLSSLYTVAMKAAGA 367 (643)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l---------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 367 (643)
..+.......+..++..+..+++++++++.+ .|.+|+|.+ ++++.+...+..|+..++..+..++++..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~ 320 (588)
T PRK11174 242 VLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGA 320 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777766666666665555555555544 377777754 333356677889999999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHc
Q 006489 368 SRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIER 447 (643)
Q Consensus 368 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g 447 (643)
.+|+.++++.+++..............+.|+|+||+|.|++ ++++|+|+||+|+|||++||||+||||||||+++|+|
T Consensus 321 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 321 AESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred HHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 99999999876543221111111112346999999998764 3579999999999999999999999999999999999
Q ss_pred CCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCccc
Q 006489 448 FYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQ 527 (643)
Q Consensus 448 ~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~ 527 (643)
+| |++|+|++||+|+++++.+++|++|+||||||+||+|||||||++|+| +++++++++||+.|++++||++||+|||
T Consensus 399 ~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~-~~~~eei~~al~~a~l~~~i~~lp~G~d 476 (588)
T PRK11174 399 FL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP-DASDEQLQQALENAWVSEFLPLLPQGLD 476 (588)
T ss_pred CC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC-CCCHHHHHHHHHHhCHHHHHHhcccccc
Confidence 99 999999999999999999999999999999999999999999999987 7999999999999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEE
Q 006489 528 TFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV 607 (643)
Q Consensus 528 T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl 607 (643)
|.|||+|.+|||||||||+||||+++||+||||||||||||++||+.|.++|+++.+++|+|+||||++++++||+|+||
T Consensus 477 T~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl 556 (588)
T PRK11174 477 TPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVM 556 (588)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred eCCEEEEEcChhHHhhcCChHHHHHHHHhcC
Q 006489 608 SDGEIVESGTHEELLSKGGVYTALVKRQLQE 638 (643)
Q Consensus 608 ~~G~Ive~G~~~eL~~~~g~y~~l~~~q~~~ 638 (643)
++|+|+|+|+|+||++++|.|+++++.|.++
T Consensus 557 ~~G~i~e~G~~~eL~~~~~~y~~l~~~q~~~ 587 (588)
T PRK11174 557 QDGQIVQQGDYAELSQAGGLFATLLAHRQEE 587 (588)
T ss_pred eCCeEeecCCHHHHHhcchHHHHHHHHhhcC
Confidence 9999999999999999999999999988764
No 6
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=4.1e-103 Score=906.97 Aligned_cols=601 Identities=26% Similarity=0.389 Sum_probs=547.1
Q ss_pred CCcceeccCCCCccccC-----CCCCCccccccCCCCCCc---cchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006489 19 GERAPLLDHGGRRKRND-----ASENGNVTDLEHGDAVPA---ANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIP 90 (643)
Q Consensus 19 ~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 90 (643)
++++.++||+.|++..+ ..++|.+..++|.+++++ ....+++++.+++++++.+...++++++..++.++.|
T Consensus 95 ~~~~~i~dP~~g~~~~~~~e~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p 174 (710)
T TIGR03796 95 GGRVYLNDPALGPRTVSLEEFDESFTGVVLTFEPGPEFQKGGRKPSLLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIP 174 (710)
T ss_pred CCEEEEECCCCCCEEccHHHHHhhCCCeEEEEEECccccccCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999988765 334777778877666543 2346778888999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhc
Q 006489 91 KFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYD 170 (643)
Q Consensus 91 ~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~ 170 (643)
++++.++|.+..... ...++.++++++++.++..++.+++.++..+++.++..++|..+|+|++++|+.+|+
T Consensus 175 ~~~~~iid~v~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~ 246 (710)
T TIGR03796 175 AFSQIFVDEILVQGR--------QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFA 246 (710)
T ss_pred HHHHHHHHHHhhcCC--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc
Confidence 999999998765432 122334455556666778889999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 171 VTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQ 250 (643)
Q Consensus 171 ~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 250 (643)
++++|++++|+++| +.+++++...+..++.+++.+++++++++.++|++++++++.+++++++..++.++.++..++..
T Consensus 247 ~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (710)
T TIGR03796 247 QRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQ 325 (710)
T ss_pred CCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 006489 251 AAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITG 330 (643)
Q Consensus 251 ~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g 330 (643)
+..++..+.+.|.++|+++||++++|+.+.++|.+...+..+...+..+...+...+..++..+..++++++|++++.+|
T Consensus 326 ~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g 405 (710)
T TIGR03796 326 QDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEG 405 (710)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999888888888888888888999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC------CCCCCCCCCCcEEEEeEEE
Q 006489 331 SMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSG------NQCPLGDQDGEVELDDVWF 404 (643)
Q Consensus 331 ~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~------~~~~~~~~~~~I~~~~vsf 404 (643)
.+|+|.++++.++...+..|+..+...+..++++..+++|+.++++.+++..... ...+.+...+.|+++||+|
T Consensus 406 ~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf 485 (710)
T TIGR03796 406 QLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITF 485 (710)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEE
Confidence 9999999999999999999999999999999999999999999998776543221 0111022346799999999
Q ss_pred ECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCC
Q 006489 405 AYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVL 484 (643)
Q Consensus 405 ~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~L 484 (643)
+|++. ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+|
T Consensus 486 ~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 564 (710)
T TIGR03796 486 GYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFL 564 (710)
T ss_pred ecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChh
Confidence 99864 46899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccc
Q 006489 485 FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEAT 564 (643)
Q Consensus 485 f~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~T 564 (643)
|+|||||||+++++ +++++++++|++.++++++|.++|+||||.|||+|.+|||||||||+||||++++|+|+||||||
T Consensus 565 f~gTi~eNi~l~~~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEpt 643 (710)
T TIGR03796 565 FEGTVRDNLTLWDP-TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEAT 643 (710)
T ss_pred hhccHHHHhhCCCC-CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECcc
Confidence 99999999999976 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHH
Q 006489 565 SALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALV 632 (643)
Q Consensus 565 SaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~ 632 (643)
||||++||+.|.+.|++ .++|+|+||||+++++.||+|+|||+|+|+|.|+|+||++++|.|++++
T Consensus 644 S~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 644 SALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred ccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 99999999999999987 5899999999999999999999999999999999999999999999987
No 7
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=5.7e-103 Score=904.89 Aligned_cols=603 Identities=26% Similarity=0.394 Sum_probs=545.4
Q ss_pred CCcceeccC--CCCccccCC-----CCCCccccccCCCCCCcc---chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 006489 19 GERAPLLDH--GGRRKRNDA-----SENGNVTDLEHGDAVPAA---NVGFGRVLALAKPDAGKLIIATVALLIASVSSIL 88 (643)
Q Consensus 19 ~~~~~l~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (643)
++++.++|| +.|++..+. .++|.+..++|++++++. ...+++++.+++++++.++..++++++..++.++
T Consensus 95 ~~~~~i~dP~~~~g~~~~~~~ef~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (708)
T TIGR01193 95 KNHLIIADPDPTVGITKISKEDFYEEWTGIAIFISPTPEYKPIKEKENSLLKFIPLITRQKKLIVNIVIAAIIVTLISIA 174 (708)
T ss_pred CCEEEEEcCCcccCCEEecHHHHHhhCCCEEEEEEecccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999 888877653 347777777776665432 2457788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhh
Q 006489 89 IPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAF 168 (643)
Q Consensus 89 ~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~ 168 (643)
.|++++.++|.+..... ...++.+.++++++.++..++.+++.++..+++.++..++|.++|+|++++|+.+
T Consensus 175 ~p~~~~~iiD~v~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~ 246 (708)
T TIGR01193 175 GSYYLQKIIDTYIPHKM--------MGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSF 246 (708)
T ss_pred HHHHHHHHHHHhhccCC--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999998865422 2223334445555667788899999999999999999999999999999999999
Q ss_pred hccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 169 YDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHK 248 (643)
Q Consensus 169 ~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~ 248 (643)
|+++++|++++|++ |.+.+++++.......+.+.++++++++++++++|++++++++++|+++++..++.++.++..++
T Consensus 247 f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~ 325 (708)
T TIGR01193 247 FSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHD 325 (708)
T ss_pred hCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 89999999999888888898899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 249 TQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTI 328 (643)
Q Consensus 249 ~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~ 328 (643)
.++..++..+.+.|+++|+++||++|.|+.+.++|++...+..+...+..+.......+..++..+..++++++|++++.
T Consensus 326 ~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~ 405 (708)
T TIGR01193 326 AMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVM 405 (708)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888888877788888888889999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCC
Q 006489 329 TGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPS 408 (643)
Q Consensus 329 ~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~ 408 (643)
+|.+|+|.++++.++...+..|+..+...+..+++++.+.+|+.++++.+++.+......+.+...+.|+|+||+|+|++
T Consensus 406 ~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~ 485 (708)
T TIGR01193 406 RGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY 485 (708)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999877654322211112234567999999999974
Q ss_pred CCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCccc
Q 006489 409 RPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCS 488 (643)
Q Consensus 409 ~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gT 488 (643)
++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||+||
T Consensus 486 --~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gT 563 (708)
T TIGR01193 486 --GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGS 563 (708)
T ss_pred --CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHH
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCC
Q 006489 489 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALD 568 (643)
Q Consensus 489 ireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD 568 (643)
|||||+++.+++++++++++|++.++++++|+++|+||||.|||+|.+|||||||||+||||++++|+|||||||||+||
T Consensus 564 I~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD 643 (708)
T TIGR01193 564 ILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643 (708)
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCC
Confidence 99999999422799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHH
Q 006489 569 AESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVK 633 (643)
Q Consensus 569 ~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~ 633 (643)
+++|+.+.+.|++. +++|+|+||||+++++.||+|++|++|+|+|.|+|+||++++|.|+++++
T Consensus 644 ~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 644 TITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred HHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 99999999999885 78999999999999999999999999999999999999999999999985
No 8
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2e-101 Score=890.12 Aligned_cols=591 Identities=25% Similarity=0.373 Sum_probs=533.9
Q ss_pred ceeccCCCC--ccccCC-----CCCCccccccCCCCCCc------cchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 006489 22 APLLDHGGR--RKRNDA-----SENGNVTDLEHGDAVPA------ANVGFGRVLALAKPDAGKLIIATVALLIASVSSIL 88 (643)
Q Consensus 22 ~~l~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (643)
+.++||+.| ++..+. .++|.+..++|.+++++ ....+++++.+++++++.+...++++++..++.++
T Consensus 86 ~~i~DP~~g~~~~~~~~~e~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 165 (694)
T TIGR03375 86 ARVLLPETGDGEQELSLDALEALYSGYAIFVRPQFRFDARADELISPRPKHWFWSTLKESWPLYRDVLIASLLINLLALA 165 (694)
T ss_pred EEEEccCCCCCceEecHHHHHhhcCCeEEEEecccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 666542 23676666666554332 12457778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhh
Q 006489 89 IPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAF 168 (643)
Q Consensus 89 ~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~ 168 (643)
.|++++.++|.+..... ...++.++++++++.++..++.+++.++..+.+.++..++|..+|+|++++|+.+
T Consensus 166 ~p~~~~~iiD~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~ 237 (694)
T TIGR03375 166 SPLFVMNVYDRVVPNQA--------FETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA 237 (694)
T ss_pred HHHHHHHHHHHhhhcCc--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 99999999998764322 1223334445555566778889999999999999999999999999999999998
Q ss_pred hccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 169 YDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHK 248 (643)
Q Consensus 169 ~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~ 248 (643)
+++++|++++|+ +|++.+++++...+...+.+++.++++++++++++|++++++++++|+++++..++.++.++..++
T Consensus 238 -~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~ 315 (694)
T TIGR03375 238 -RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEE 315 (694)
T ss_pred -CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999 799999999998888888898899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 249 TQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTI 328 (643)
Q Consensus 249 ~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~ 328 (643)
..+..++..+.+.|+++|+++||++++|+.+.++|++..++..+...+..+.......+..++..+..++++++|++++.
T Consensus 316 ~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~ 395 (694)
T TIGR03375 316 SMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLIS 395 (694)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888888888888899999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCC
Q 006489 329 TGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPS 408 (643)
Q Consensus 329 ~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~ 408 (643)
+|.+|+|.++++..+...+..|+..+...+..++.++.+.+|+.++++.+++.+......+.+...+.|+|+||+|+|++
T Consensus 396 ~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~ 475 (694)
T TIGR03375 396 DGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPG 475 (694)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999887654322111111223467999999999986
Q ss_pred CCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCccc
Q 006489 409 RPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCS 488 (643)
Q Consensus 409 ~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gT 488 (643)
. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|+||
T Consensus 476 ~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~T 554 (694)
T TIGR03375 476 Q-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGT 554 (694)
T ss_pred C-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhh
Confidence 4 467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCC
Q 006489 489 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALD 568 (643)
Q Consensus 489 ireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD 568 (643)
|||||+++++ +++++++++|++.|+++++|++||+||||.|||+|.+|||||||||+||||++++|+|+||||||||||
T Consensus 555 I~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD 633 (694)
T TIGR03375 555 LRDNIALGAP-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD 633 (694)
T ss_pred HHHHHhCCCC-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 9999999987 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 569 AESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 569 ~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
+++|+.|.++|++..+++|+|+||||+++++.||+|++|++|+|+|+|+|+||+++
T Consensus 634 ~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 634 NRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999899999999999999999999999999999999999999874
No 9
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.8e-100 Score=878.07 Aligned_cols=566 Identities=45% Similarity=0.700 Sum_probs=515.4
Q ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 55 NVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVC 134 (643)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (643)
...+++++++++++++.+...+++.++..++.++.|++++.++|.+..... ...+...++.++++.++..++
T Consensus 146 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 217 (711)
T TIGR00958 146 ADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG--------PPALASAIFFMCLLSIASSVS 217 (711)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHHHHHHH
Confidence 346778889999999999999999999999999999999999998864322 111222334444555667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 135 TALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 214 (643)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (643)
.+++.++....+.++..++|..+|++++++|+.+|++.++|++++|+++|++.+.+.+...+..++.+++.+++.+++++
T Consensus 218 ~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~ 297 (711)
T TIGR00958 218 AGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFML 297 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 006489 215 ATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLG 294 (643)
Q Consensus 215 ~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 294 (643)
.++|++++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+..
T Consensus 298 ~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 377 (711)
T TIGR00958 298 WLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLN 377 (711)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 295 LQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQL 374 (643)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~ 374 (643)
.+.....+.......++..+..++++++|++++.+|.+|+|.+++++.+...+..|+..++..+..++++..+.+|+.++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~ 457 (711)
T TIGR00958 378 KRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEY 457 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777777777777888888999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCC
Q 006489 375 LDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG 454 (643)
Q Consensus 375 l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G 454 (643)
++.+++.+......+ .+..+.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|
T Consensus 458 l~~~~~~~~~~~~~~-~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G 536 (711)
T TIGR00958 458 LDRKPNIPLTGTLAP-LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG 536 (711)
T ss_pred hCCCCCCCCCCCCCC-CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 987665432222111 1234679999999999875456899999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCC
Q 006489 455 KILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERG 534 (643)
Q Consensus 455 ~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G 534 (643)
+|++||+|+++++.+++|++|+||||||++|+|||||||+++.+ +.+|+++++|++.|+++++++++|+||||.+||+|
T Consensus 537 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 615 (711)
T TIGR00958 537 QVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT-DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG 615 (711)
T ss_pred EEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCC
Confidence 99999999999999999999999999999999999999999986 78999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEE
Q 006489 535 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 614 (643)
Q Consensus 535 ~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive 614 (643)
.+|||||||||+||||++++|+|+||||||||||+++|+.+.+ ....+++|+|+||||+++++.||+|+||++|+|+|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive 693 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVE 693 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999 33457999999999999999999999999999999
Q ss_pred EcChhHHhhcCChHHHHH
Q 006489 615 SGTHEELLSKGGVYTALV 632 (643)
Q Consensus 615 ~G~~~eL~~~~g~y~~l~ 632 (643)
+|+|+||++++|.|++|+
T Consensus 694 ~Gt~~eL~~~~~~y~~lv 711 (711)
T TIGR00958 694 MGTHKQLMEDQGCYKHLV 711 (711)
T ss_pred eeCHHHHHhCCCchHhcC
Confidence 999999999999999864
No 10
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-102 Score=883.29 Aligned_cols=575 Identities=41% Similarity=0.644 Sum_probs=527.7
Q ss_pred hhHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 56 VGFGRVLALAKP-DAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVC 134 (643)
Q Consensus 56 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (643)
..+..++++... .+..+.++.+.+++..+..++..++.+.++|.+...... ........+++.++.+.+...+.
T Consensus 13 ~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~-----~~~~~~~~~~l~~~~lg~~~~~~ 87 (1228)
T KOG0055|consen 13 VSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNK-----IASSEVSKVALYFVYLGVGVFIS 87 (1228)
T ss_pred cchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccch-----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666655 345555778888888888888888999999987654321 11233445566666666777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 135 TALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 214 (643)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (643)
.+++..++.+.++|...++|..+++.+++++..|||++.+|++.+++++|++.+++.+...+..++..+.+++.++++.|
T Consensus 88 ~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F 167 (1228)
T KOG0055|consen 88 GFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGF 167 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 006489 215 ATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLG 294 (643)
Q Consensus 215 ~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 294 (643)
++.|.++++++.+.|++++....+.+.+.+...+.++++++..+...|++.++|||.+|+.|+.+.++|.+..+...+..
T Consensus 168 ~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~g 247 (1228)
T KOG0055|consen 168 YYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFG 247 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 295 LQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQL 374 (643)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~ 374 (643)
.+...+.++..++..++.+.+.+..+|||..++..+..+.|.+++++.....-...+.+....+..+..+++++.++++.
T Consensus 248 i~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~ 327 (1228)
T KOG0055|consen 248 IKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFET 327 (1228)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHH
Confidence 99999999999999999999999999999999999999999988877666666777788888899999999999999999
Q ss_pred hcccCCCCCC-CCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCC
Q 006489 375 LDRVSSMPKS-GNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK 453 (643)
Q Consensus 375 l~~~~~~~~~-~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~ 453 (643)
++..+..... .........++.|||+||+|+||.+|+.++|+|+||+|++||+|||||+|||||||++++|.|+|+|++
T Consensus 328 i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~ 407 (1228)
T KOG0055|consen 328 IDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTS 407 (1228)
T ss_pred hcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 9987655422 122233445689999999999999988899999999999999999999999999999999999999999
Q ss_pred CEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCC
Q 006489 454 GKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGER 533 (643)
Q Consensus 454 G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~ 533 (643)
|+|+|||.|+++++.+|+|++||.|.|||.||++||+|||+||+| +++++++++||+.+++++||.+||+||||.+||+
T Consensus 408 G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~-dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~ 486 (1228)
T KOG0055|consen 408 GEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP-DATREEIEEAAKAANAHDFILKLPDGYDTLVGER 486 (1228)
T ss_pred ceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCC-cccHHHHHHHHHHccHHHHHHhhHHhhcccccCC
Confidence 999999999999999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEE
Q 006489 534 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIV 613 (643)
Q Consensus 534 G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Iv 613 (643)
|..|||||||||||||||++||+||||||||||||+++|+.|+++|++..+|+|.|+|||||+|+++||+|+||++|+||
T Consensus 487 g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 487 GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIV 566 (1228)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcChhHHhhcCChHHHHHHHHh
Q 006489 614 ESGTHEELLSKGGVYTALVKRQL 636 (643)
Q Consensus 614 e~G~~~eL~~~~g~y~~l~~~q~ 636 (643)
|.|+|+||++.+|.|++|++.|.
T Consensus 567 E~G~h~ELi~~~G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 567 EQGTHDELIALGGIYSSLVRLQE 589 (1228)
T ss_pred EecCHHHHHhccchHHHHHHHHh
Confidence 99999999999999999999884
No 11
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=9.5e-100 Score=857.41 Aligned_cols=563 Identities=40% Similarity=0.689 Sum_probs=514.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 58 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 137 (643)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (643)
+++++.+.+ ++ .+.++.++.++..++....|++++.++|.+... ......+...++++.++..++.+.
T Consensus 4 ~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~ 71 (567)
T COG1132 4 LRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD----------LGELLELLLLLLLLALLGGVLRAL 71 (567)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666 77 888889999999999999999999999988611 222333444455555567777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006489 138 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 217 (643)
Q Consensus 138 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (643)
..++....+.++..++|.++|++++++|+.+|++.++|++++|+++|++.+.+.+......+...++.++..+++++..+
T Consensus 72 ~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (567)
T COG1132 72 QSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLS 151 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888899999999999999999999999999999999999999999999988875555556888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 006489 218 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 297 (643)
Q Consensus 218 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 297 (643)
|.+++++++..|++.+...++.++.++..++.++..++..+.+.|.++|++++|+|+.|+...+++.+..++..+...+.
T Consensus 152 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~ 231 (567)
T COG1132 152 WRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRA 231 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888889999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006489 298 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 377 (643)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~ 377 (643)
.+..+....+..++..+..++++++|.+.+..+.+++|.+++++.+...+..|+..+...+..++.+..+++|+.++++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~ 311 (567)
T COG1132 232 SRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDE 311 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEE
Q 006489 378 VSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL 457 (643)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~ 457 (643)
+++..+.... .....++|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 312 ~~~~~~~~~~--~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~ 387 (567)
T COG1132 312 EPEVEDPPDP--LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387 (567)
T ss_pred CccccCCCCC--CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE
Confidence 6654332221 1223467999999999985 35899999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCC
Q 006489 458 LNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 537 (643)
Q Consensus 458 idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~L 537 (643)
+||+|+++++.+++|++|+||||||+||++||+|||++|++ +++|||+++||+.|+++|||+++|+||||.|||+|.+|
T Consensus 388 idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~-~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~L 466 (567)
T COG1132 388 IDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP-DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466 (567)
T ss_pred ECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccC
Confidence 99999999999999999999999999999999999999987 79999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcC
Q 006489 538 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 617 (643)
Q Consensus 538 SGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~ 617 (643)
||||||||+||||+++|||||||||||||||++||+.|+++++++.++||+|+||||++++++||+|+|||+|+|+|+|+
T Consensus 467 SgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~ 546 (567)
T COG1132 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGT 546 (567)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hhHHhhcCChHHHHHHHHhc
Q 006489 618 HEELLSKGGVYTALVKRQLQ 637 (643)
Q Consensus 618 ~~eL~~~~g~y~~l~~~q~~ 637 (643)
|+||++++|.|++|++.|..
T Consensus 547 h~eLl~~~g~y~~l~~~~~~ 566 (567)
T COG1132 547 HEELLAKGGLYARLYQAQGG 566 (567)
T ss_pred HHHHHHcCCHHHHHHHHhhc
Confidence 99999999999999998853
No 12
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.2e-99 Score=871.15 Aligned_cols=606 Identities=31% Similarity=0.467 Sum_probs=547.3
Q ss_pred CCcceeccCCCC-ccccC-----CCCCCccccccCCCCCC-ccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 19 GERAPLLDHGGR-RKRND-----ASENGNVTDLEHGDAVP-AANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPK 91 (643)
Q Consensus 19 ~~~~~l~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 91 (643)
++++.++||+.| ++..+ ..++|.+..++|.+..+ .....+++++++++++++.+...++++++..++.++.|+
T Consensus 81 ~~~~~i~Dp~~g~~~~i~~~e~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~ 160 (694)
T TIGR01846 81 ANGVTIYDPPGDAPEVLSREVLEALWSGTVILLATRSVAGKALKFGFSWFIPAIIRYRKQFREVLLISLALQLFALVTPL 160 (694)
T ss_pred CCEEEEEcCCCCCceeeCHHHHHhhCCCeEEEEecCccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999988 55544 23367777666654111 123467788888999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcc
Q 006489 92 FGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDV 171 (643)
Q Consensus 92 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~ 171 (643)
+++.++|.+..... ...++.++++++++.++..++.+++.++..+++.++..++|.++|+|++++|+.+|++
T Consensus 161 ~~~~iid~v~~~~~--------~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~ 232 (694)
T TIGR01846 161 LFQVVIDKVLVHRG--------LSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFES 232 (694)
T ss_pred HHHHHHHHhhccCC--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCC
Confidence 99999998864322 2223344555566667788899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 172 TRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQA 251 (643)
Q Consensus 172 ~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 251 (643)
+++|++++|+ +|++.+++++...+..++.++++++++++++++++|++++++++++|+++++..++.++.++..++..+
T Consensus 233 ~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 311 (694)
T TIGR01846 233 RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFE 311 (694)
T ss_pred CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 599999999988888888888888888999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 006489 252 AAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGS 331 (643)
Q Consensus 252 ~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~ 331 (643)
..++..+.+.|+++|+++||++|.|+.+.++|++..++..+...+..+..+....+..++..+..++++++|++++.+|.
T Consensus 312 ~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ 391 (694)
T TIGR01846 312 RSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGA 391 (694)
T ss_pred HHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999998888888888888889999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCC
Q 006489 332 MTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPN 411 (643)
Q Consensus 332 lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~ 411 (643)
+|+|.++++.++...+..|+..+...+..+++++.+.+|+.++++.+++..... ..+.+...+.|+++||+|+|++. +
T Consensus 392 it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-~~~~~~~~~~i~~~~vsf~y~~~-~ 469 (694)
T TIGR01846 392 LSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAG-LAALPELRGAITFENIRFRYAPD-S 469 (694)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCC-CCCCCCCCCeEEEEEEEEEcCCC-C
Confidence 999999999999999999999999999999999999999999998776543221 11122234679999999999864 4
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHH
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEE 491 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTire 491 (643)
+++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|++||||
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~e 549 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRD 549 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHH
Q 006489 492 NIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAES 571 (643)
Q Consensus 492 NI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~t 571 (643)
||+++++ +++++++++||+.++++++++++|+||||.+||+|.+|||||||||+||||++++|+|+|||||||+||+++
T Consensus 550 Ni~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~ 628 (694)
T TIGR01846 550 NIALCNP-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628 (694)
T ss_pred HHhcCCC-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 9999987 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHh
Q 006489 572 EYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 636 (643)
Q Consensus 572 e~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~q~ 636 (643)
|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|+||++++|.|+++++.|.
T Consensus 629 ~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 693 (694)
T TIGR01846 629 EALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQQS 693 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHhhc
Confidence 99999999998889999999999999999999999999999999999999999999999998763
No 13
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=6.8e-98 Score=846.23 Aligned_cols=568 Identities=34% Similarity=0.528 Sum_probs=517.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 58 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 137 (643)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (643)
+++++++++++++.+++.+++.++..++..+.|++++.++|.+..... ...+..+++.++++.++..++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~ 84 (582)
T PRK11176 13 FRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD--------RSVLKWMPLVVIGLMILRGITSFI 84 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888888888888888899999999998764321 111122233344456667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006489 138 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 217 (643)
Q Consensus 138 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (643)
+.++..+++.++...+|..+|++++++|+.+|++.++|++++|+++|++.+.+.+...+..++.+++.+++.++++++++
T Consensus 85 ~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (582)
T PRK11176 85 SSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS 164 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 006489 218 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 297 (643)
Q Consensus 218 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 297 (643)
|++++++++++|+.+++..+..++.++..++.++..++..+.+.|.++|+++||+++.|+.+.++|++..++..+...+.
T Consensus 165 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (582)
T PRK11176 165 WQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKM 244 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006489 298 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 377 (643)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~ 377 (643)
.+.......+..++..+..++++++|++.+..|.+|+|.++++..+...+..|+..+...+..++.++.+.+|+.++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~ 324 (582)
T PRK11176 245 VSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDL 324 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99888888888888888888889999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEE
Q 006489 378 VSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL 457 (643)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~ 457 (643)
+++.+..... .++..+.|+++||+|+|+++ ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 325 ~~~~~~~~~~--~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~ 401 (582)
T PRK11176 325 EQEKDEGKRV--IERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401 (582)
T ss_pred CCcCCCCCcC--CCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE
Confidence 6543221111 11233579999999999864 46899999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCC
Q 006489 458 LNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 537 (643)
Q Consensus 458 idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~L 537 (643)
+||+|+++++.+++|++|+||||||++|+|||||||+++++++++|++++++++.+++++++++||+|+||.+||+|.+|
T Consensus 402 i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~L 481 (582)
T PRK11176 402 LDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLL 481 (582)
T ss_pred ECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcC
Confidence 99999999999999999999999999999999999999976358999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcC
Q 006489 538 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 617 (643)
Q Consensus 538 SGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~ 617 (643)
||||||||+|||||+++|+|+||||||||||++||+.+.+.|.+..+++|+|+||||+++++.||+|++|++|+|+|+|+
T Consensus 482 SGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~ 561 (582)
T PRK11176 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGT 561 (582)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhhcCChHHHHHHHHh
Q 006489 618 HEELLSKGGVYTALVKRQL 636 (643)
Q Consensus 618 ~~eL~~~~g~y~~l~~~q~ 636 (643)
|++|+++++.|++|+..|.
T Consensus 562 ~~~l~~~~~~y~~l~~~~~ 580 (582)
T PRK11176 562 HAELLAQNGVYAQLHKMQF 580 (582)
T ss_pred HHHHHhCCChHHHHHHHHh
Confidence 9999999999999998764
No 14
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.3e-98 Score=905.68 Aligned_cols=568 Identities=30% Similarity=0.414 Sum_probs=494.9
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 57 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 136 (643)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (643)
.+.++++.++++++.+++++++.++..++.++.|++++.++|.+..... . ......+.+.++++.++..++.+
T Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~---~~~~~~~~l~~~~~~i~~~~~~~ 884 (1466)
T PTZ00265 812 NLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFAN----L---EANSNKYSLYILVIAIAMFISET 884 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH----H---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888889999999999999999999999999997653210 0 11122344555566677788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 137 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDV--TRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 214 (643)
Q Consensus 137 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (643)
++.|+..++++++..++|.++|++++++|+.||++ +++|++++|+++|++.+++++...+..++..++.+++++++++
T Consensus 885 l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~ 964 (1466)
T PTZ00265 885 LKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSF 964 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986 7899999999999999999999888888888989999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHchHHHHHHhCch
Q 006489 215 ATSWKLTLLALVVVPAISVAVRKFGRFLRELS-HK-----------------TQAAAATAASIAEESFGAIRTVRSFAQE 276 (643)
Q Consensus 215 ~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~ik~~~~e 276 (643)
+++|.++++++++++++ ...+.++.+... ++ ..+..++....+.|+++|+++||+|+.|
T Consensus 965 ~~~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e 1041 (1466)
T PTZ00265 965 YFCPIVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLE 1041 (1466)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcch
Confidence 99999888766544333 333333322211 11 1234567788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 277 KNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSS 356 (643)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~ 356 (643)
+.+.++|++..++..+...+.....++..++.+++..+..++++|+|++++..|.+|+|.+++++.++.....++..+..
T Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~ 1121 (1466)
T PTZ00265 1042 DYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMS 1121 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888999999888888888888899999999999999999999999988776666667888999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCC-CCCCC---CCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEEC
Q 006489 357 LYTVAMKAAGASRRVFQLLDRVSSMPKS-GNQCP---LGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVG 432 (643)
Q Consensus 357 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~---~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG 432 (643)
.+..+++++.+++|+.++++.+++.+.. ....+ .....+.|+|+||+|+||++++.++|+|+||+|++|++|||||
T Consensus 1122 ~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG 1201 (1466)
T PTZ00265 1122 LKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVG 1201 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEEC
Confidence 9999999999999999999876543211 11111 1223467999999999987655689999999999999999999
Q ss_pred CCCChHHHHHHHHHcCCCC------------------------------------------------------CCCEEEE
Q 006489 433 PSGGGKSTIANLIERFYDP------------------------------------------------------IKGKILL 458 (643)
Q Consensus 433 ~sGsGKSTLl~lL~g~~~p------------------------------------------------------~~G~I~i 458 (643)
+||||||||+++|+|+|+| ++|+|++
T Consensus 1202 ~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~i 1281 (1466)
T PTZ00265 1202 ETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILL 1281 (1466)
T ss_pred CCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEE
Confidence 9999999999999999999 6999999
Q ss_pred CCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 006489 459 NGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 538 (643)
Q Consensus 459 dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LS 538 (643)
||+|+++++.+++|++|+||||||+||+|||||||+||++ +++++++++||+.|++++||++||+||||.|||+|.+||
T Consensus 1282 dG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LS 1360 (1466)
T PTZ00265 1282 DGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLS 1360 (1466)
T ss_pred CCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCC
Confidence 9999999999999999999999999999999999999987 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhhcCeEEEEeC----CEE
Q 006489 539 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSD----GEI 612 (643)
Q Consensus 539 GGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~aD~Iivl~~----G~I 612 (643)
|||||||||||||+++|+||||||||||||+++|+.|+++|.+.. +++|+|+||||++++++||+|+||++ |++
T Consensus 1361 GGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~i 1440 (1466)
T PTZ00265 1361 GGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSF 1440 (1466)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCE
Confidence 999999999999999999999999999999999999999999884 69999999999999999999999999 995
Q ss_pred E-EEcChhHHhh-cCChHHHHHHHH
Q 006489 613 V-ESGTHEELLS-KGGVYTALVKRQ 635 (643)
Q Consensus 613 v-e~G~~~eL~~-~~g~y~~l~~~q 635 (643)
+ |+|+|+||++ ++|.|++|++.|
T Consensus 1441 v~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1441 VQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred EEEecCHHHHHhcCCChHHHHHhhc
Confidence 5 8999999998 599999999876
No 15
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.6e-97 Score=835.20 Aligned_cols=568 Identities=24% Similarity=0.346 Sum_probs=505.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 58 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 137 (643)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (643)
+++++++.+++++.+++++++.++..++.+..|++++++||........... .....+ .++.++++.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~ 79 (574)
T PRK11160 4 LLPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLY---SFNYML-PAAGVRGAAIGRTAGRYG 79 (574)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh---hHHHHh-HHHHHHHHHHHHHHHHHH
Confidence 4457778889999999999999999999999999999999975421110000 011111 122344455677888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006489 138 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 217 (643)
Q Consensus 138 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (643)
..++..+.+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++...+..++.+++.+++.++++++++
T Consensus 80 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (574)
T PRK11160 80 ERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFD 159 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 006489 218 WKLTLLALVVVPAISVA-VRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 296 (643)
Q Consensus 218 ~~l~l~~l~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (643)
|++++++++++|+++++ ..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+
T Consensus 160 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (574)
T PRK11160 160 LTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRR 239 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888776654 46667888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006489 297 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLT-VGSSVSGLSSLYTVAMKAAGASRRVFQLL 375 (643)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~ri~~~l 375 (643)
..+..+....+..++..+..++++++|+++ .+|.+++|.++++..+... ...|+..+...+..++++..+++|+.+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll 318 (574)
T PRK11160 240 QANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEIT 318 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888888888888888999988 4899999999998877544 45688889999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCE
Q 006489 376 DRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGK 455 (643)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~ 455 (643)
+.+++...+....+ ....+.|+|+||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus 319 ~~~~~~~~~~~~~~-~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~ 396 (574)
T PRK11160 319 EQKPEVTFPTTSTA-AADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE 396 (574)
T ss_pred hCCCCCCCCcccCC-CCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 87665332211111 1234579999999999864 357999999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCC
Q 006489 456 ILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGV 535 (643)
Q Consensus 456 I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~ 535 (643)
|++||+|+++++.+++|++|+||||||+||++||+|||+++++ +.+++++++|++.+++++++++ |+||||.|||+|.
T Consensus 397 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~ 474 (574)
T PRK11160 397 ILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP-NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGR 474 (574)
T ss_pred EEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC-ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCC
Confidence 9999999999999999999999999999999999999999987 7899999999999999999999 9999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEE
Q 006489 536 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 615 (643)
Q Consensus 536 ~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~ 615 (643)
+|||||||||+||||++++|+|+|||||||+||+++|+.|.++|++..+++|+|+||||+++++.||+|++|++|+|+|.
T Consensus 475 ~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~ 554 (574)
T PRK11160 475 QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQ 554 (574)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEe
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhhcCChHHHHHHH
Q 006489 616 GTHEELLSKGGVYTALVKR 634 (643)
Q Consensus 616 G~~~eL~~~~g~y~~l~~~ 634 (643)
|+|+||++++|.|+++++.
T Consensus 555 g~~~~l~~~~g~y~~l~~~ 573 (574)
T PRK11160 555 GTHQELLAQQGRYYQLKQR 573 (574)
T ss_pred CCHHHHHhcCcHHHHHHhh
Confidence 9999999999999999863
No 16
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-97 Score=785.64 Aligned_cols=552 Identities=28% Similarity=0.415 Sum_probs=509.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 74 IATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARL 153 (643)
Q Consensus 74 ~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 153 (643)
+..++.++..+..+...+++...++.+..+.. ...+..+++.++++.++.+++.+.+.....+.+.++...+
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~--------~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~L 75 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL--------FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASL 75 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666677777777777665431 2334556677778888999999999999999999999999
Q ss_pred HHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006489 154 RKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISV 233 (643)
Q Consensus 154 r~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~ 233 (643)
|..+++|+.++++.+-.+.++|++.+.+...++.++.++..+++.+....+..++.++.+++++|..+++.++++|++.+
T Consensus 76 R~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPl 155 (559)
T COG4988 76 RQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPL 155 (559)
T ss_pred HHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 234 AVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAAST 313 (643)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (643)
++..+.+..++..++++.....+++++.|.++|+.|+|.|+..+...+++.+..+++++..++..+.......+..++++
T Consensus 156 fMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~ 235 (559)
T COG4988 156 FMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAY 235 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC-CCCC
Q 006489 314 LSVIVVVIYGANLTIT-GSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQ-CPLG 391 (643)
Q Consensus 314 ~~~~~~~~~g~~~v~~-g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~-~~~~ 391 (643)
++.+++..+.+..... |.++....+.++.+...++.|++.++..++.-+++..+.+.+..+++.+.+....... ....
T Consensus 236 lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~ 315 (559)
T COG4988 236 LSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVAN 315 (559)
T ss_pred HHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccccccc
Confidence 9999999888888888 8999999999999999999999999999999999999999999999987765433321 1111
Q ss_pred CCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH
Q 006489 392 DQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL 471 (643)
Q Consensus 392 ~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l 471 (643)
....+|+.+|++|.||+. +++++|+||++++|+++||||+||||||||+++|+|+++|++|+|++||+|+++++.++|
T Consensus 316 ~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~ 393 (559)
T COG4988 316 EPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAW 393 (559)
T ss_pred CCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHH
Confidence 122345556999999975 389999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH
Q 006489 472 HRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 551 (643)
Q Consensus 472 r~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl 551 (643)
|++++||||+|+||+|||||||+++++ +.+|+++++|++.+++.+|+.. |+|+||+|||+|.+|||||+||++|||||
T Consensus 394 ~k~i~~v~Q~p~lf~gTireNi~l~~~-~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAl 471 (559)
T COG4988 394 RKQISWVSQNPYLFAGTIRENILLARP-DASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARAL 471 (559)
T ss_pred HhHeeeeCCCCccccccHHHHhhccCC-cCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999988 8999999999999999999999 99999999999999999999999999999
Q ss_pred ccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHH
Q 006489 552 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTAL 631 (643)
Q Consensus 552 ~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l 631 (643)
++++++||||||||+||.+||+.|.+.|.++.+++|+|+||||++.+++||+|+|||+|+++|+|+|+||.+++|.|++|
T Consensus 472 l~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l 551 (559)
T COG4988 472 LSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANL 551 (559)
T ss_pred cCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 006489 632 VKRQLQ 637 (643)
Q Consensus 632 ~~~q~~ 637 (643)
+++|..
T Consensus 552 ~~~q~~ 557 (559)
T COG4988 552 LKQQEG 557 (559)
T ss_pred HHHHhc
Confidence 998865
No 17
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1e-95 Score=829.10 Aligned_cols=567 Identities=29% Similarity=0.437 Sum_probs=497.3
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 57 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 136 (643)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (643)
.+++++.+.+++++.+++.+++.++..++.++.|++++.++|.+......+ ......++++++++.++..++.+
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 83 (592)
T PRK10790 10 TLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLP------LGLVAGLAAAYVGLQLLAAGLHY 83 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667778888888889999999999999999999999875432110 11112223344455556777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 137 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFAT 216 (643)
Q Consensus 137 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (643)
.+.++..+.+.++..++|.++|+++++.|+.+|++.++|++++|+++|++.+++++...+..++.+++.+++.+++++++
T Consensus 84 ~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (592)
T PRK10790 84 AQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSL 163 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999989999998888888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 006489 217 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 296 (643)
Q Consensus 217 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (643)
+|++++++++++|+.+++..++.+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+
T Consensus 164 ~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (592)
T PRK10790 164 DWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQ 243 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888887777788888888888888999999999999999999999999999999999998888887777
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006489 297 QAKVVGLF-FGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLL 375 (643)
Q Consensus 297 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l 375 (643)
..+..+.. ..+..++..+..+++++++++ +..|.+++|.++++..+...+..|+..++..+..+.++..+.+|+.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l 322 (592)
T PRK10790 244 TLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELM 322 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 76665543 333333443333333333444 6789999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCE
Q 006489 376 DRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGK 455 (643)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~ 455 (643)
+.+++...... .+...++|+|+||+|+|++ ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+
T Consensus 323 ~~~~~~~~~~~---~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~ 397 (592)
T PRK10790 323 DGPRQQYGNDD---RPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE 397 (592)
T ss_pred cCCCccCCCCc---cCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence 86544322111 1122357999999999985 357999999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCC
Q 006489 456 ILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGV 535 (643)
Q Consensus 456 I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~ 535 (643)
|++||.|+++++++++|++|+||||||+||+|||||||++++ +++|+++++|++.+++++++++||+||||.+||+|.
T Consensus 398 I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~ 475 (592)
T PRK10790 398 IRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGN 475 (592)
T ss_pred EEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCC
Confidence 999999999999999999999999999999999999999995 589999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEE
Q 006489 536 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 615 (643)
Q Consensus 536 ~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~ 615 (643)
+|||||||||+|||||+++|||+||||||||||++||+.|.+.|++..++||+|+||||+++++.||+|++|++|+|+|.
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~ 555 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQ 555 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhhcCChHHHHHHHHhc
Q 006489 616 GTHEELLSKGGVYTALVKRQLQ 637 (643)
Q Consensus 616 G~~~eL~~~~g~y~~l~~~q~~ 637 (643)
|+|+||+++++.|+++++.|..
T Consensus 556 G~~~~L~~~~~~y~~l~~~~~~ 577 (592)
T PRK10790 556 GTHQQLLAAQGRYWQMYQLQLA 577 (592)
T ss_pred cCHHHHHhCCCHHHHHHHHHhh
Confidence 9999999999999999997754
No 18
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.1e-95 Score=827.07 Aligned_cols=569 Identities=35% Similarity=0.564 Sum_probs=524.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 58 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 137 (643)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (643)
+++++++.+++++.+++++++.++..++.+..|++++.++|....... ...+..++++++++.++..++.++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~ 73 (571)
T TIGR02203 2 FRRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD--------RSVLWWVPLVVIGLAVLRGICSFV 73 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc--------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999999999999999999997654321 122233344556667777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006489 138 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 217 (643)
Q Consensus 138 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (643)
+.++..+.+.++...+|..+|+++++.|.+++++.++|++++|+++|++.+++++...+..++.+++.++++++++++++
T Consensus 74 ~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 153 (571)
T TIGR02203 74 STYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYS 153 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 006489 218 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 297 (643)
Q Consensus 218 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 297 (643)
|+++++.++++|+.+++..++.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.++|++..++..+...+.
T Consensus 154 ~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (571)
T TIGR02203 154 WQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKM 233 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006489 298 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 377 (643)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~ 377 (643)
.+..+....+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..+++++.+.+|+.++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 313 (571)
T TIGR02203 234 TSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDS 313 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99998888888888888888999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEE
Q 006489 378 VSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL 457 (643)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~ 457 (643)
+++.+..... ..+..++|+++||+|+|++. ++++|+|+||+|++||+|+|+|+||||||||+++|+|+|+|++|+|+
T Consensus 314 ~~~~~~~~~~--~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~ 390 (571)
T TIGR02203 314 PPEKDTGTRA--IERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390 (571)
T ss_pred CCCCCCCCCC--CCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 6554322111 11234579999999999864 46799999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCC
Q 006489 458 LNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 537 (643)
Q Consensus 458 idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~L 537 (643)
+||+|+++++.+++|++|+||||+|++|+|||||||+++++++.++++++++++.|++++++.+||+|+||.|||+|.+|
T Consensus 391 i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~L 470 (571)
T TIGR02203 391 LDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLL 470 (571)
T ss_pred ECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcC
Confidence 99999999999999999999999999999999999999974368999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcC
Q 006489 538 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 617 (643)
Q Consensus 538 SGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~ 617 (643)
||||||||+||||++++|||+|||||||+||+++|+.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+
T Consensus 471 SgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~ 550 (571)
T TIGR02203 471 SGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGT 550 (571)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhhcCChHHHHHHHHhc
Q 006489 618 HEELLSKGGVYTALVKRQLQ 637 (643)
Q Consensus 618 ~~eL~~~~g~y~~l~~~q~~ 637 (643)
|+|++++++.|++++..+.+
T Consensus 551 ~~~l~~~~~~~~~~~~~~~~ 570 (571)
T TIGR02203 551 HNELLARNGLYAQLHNMQFR 570 (571)
T ss_pred HHHHHHcCCHHHHHHHHhhc
Confidence 99999999999999887643
No 19
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-99 Score=768.76 Aligned_cols=552 Identities=30% Similarity=0.441 Sum_probs=480.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 006489 72 LIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIV------GSVCTALRAWLFSSA 145 (643)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 145 (643)
.+...++..+.-++....|.+.++++|.+.. +... . +.+....+++.++ +.++..+|.++...+
T Consensus 217 v~~cl~ll~i~rli~~~~pi~~k~iv~~lta-p~~~-------~--~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~V 286 (790)
T KOG0056|consen 217 VVFCLFLLIIGRLINVSLPILSKWIVDELTA-PDTF-------Q--YSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPV 286 (790)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHHHHHHhhcC-cchh-------h--HHHHHHHHHHHHHhcCCccccchhhhheeEEEEh
Confidence 3345555666777888999999999998873 2110 0 1111111222222 356778899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHH
Q 006489 146 SERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGF-MFATSWKLTLLA 224 (643)
Q Consensus 146 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~l~l~~ 224 (643)
++...+++...+|+|+.+++++|+-++.+||++.-+.+.++.+. ++...+.++...++-..++++. ...++||.++++
T Consensus 287 qQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIV 365 (790)
T KOG0056|consen 287 QQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIV 365 (790)
T ss_pred hHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHH
Confidence 99999999999999999999999999999999998887777664 4444444444444333444433 345799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 225 LVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLF 304 (643)
Q Consensus 225 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (643)
+.++.++..+...+.-...+.+++......+-.....|++-|.+|||-|+.|+++.++|++...++.+...|......+.
T Consensus 366 fl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfL 445 (790)
T KOG0056|consen 366 FLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFL 445 (790)
T ss_pred HHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888766555555556666666666666677789999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 006489 305 FGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKS 384 (643)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 384 (643)
+.+.+.+..+..++...+.+|++..+.+|+|+++.+.+|..++..|++.++..+..+++..+.++++++++++++|..+.
T Consensus 446 N~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~ 525 (790)
T KOG0056|consen 446 NIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDL 525 (790)
T ss_pred HHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcC
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999998877655
Q ss_pred CCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCC
Q 006489 385 GNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV 464 (643)
Q Consensus 385 ~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~ 464 (643)
....|....+|.|+|+||+|.|++ .+|+|+||||+++||+.+|+|||||+||||++++|.|+|+.++|.|+|||+||+
T Consensus 526 P~a~pl~~~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 526 PGAPPLKVTQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR 603 (790)
T ss_pred CCCCCccccCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH
Confidence 544555566789999999999985 579999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHH
Q 006489 465 EISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 465 ~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
++..+++|++||+||||..|||+||.+||.|++| .+++||+.+|+++|++||-|.++|+||+|.|||+|..||||||||
T Consensus 604 nvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQR 682 (790)
T KOG0056|consen 604 NVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKP-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQR 682 (790)
T ss_pred HHHHHHHHHhcCcccCcceeecceeeeheeecCC-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhh
Confidence 9999999999999999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 545 ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
+||||+++|+|.|++|||||||||..||+.|+.++.++.+++|.|+|+|||+|+-+||.|+|+++|+|+|+|+|+||+++
T Consensus 683 VAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 683 VAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred HHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CChHHHHHHHHhc
Q 006489 625 -GGVYTALVKRQLQ 637 (643)
Q Consensus 625 -~g~y~~l~~~q~~ 637 (643)
+|.|++||+.|..
T Consensus 763 dgG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 763 DGGAYADMWQAQQA 776 (790)
T ss_pred cCCcHHHHHHHHHh
Confidence 8999999986654
No 20
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2e-94 Score=817.53 Aligned_cols=568 Identities=30% Similarity=0.465 Sum_probs=505.6
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 57 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 136 (643)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (643)
.+++++++++++++.+.+.+++.++..++.+..|++++.++|.+..... . ..+++.++++.++..+..+
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~--------~---~~~~~~~~~~~~~~~~~~~ 74 (588)
T PRK13657 6 LYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD--------I---FPLLAAWAGFGLFNIIAGV 74 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------H---HHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888899999999999999999999999998754310 1 1112222222333344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 137 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFAT 216 (643)
Q Consensus 137 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (643)
+..++..+...++..+++.++|+|++++|+.+|++.++|++++|+++|++.+.+.+...+..++..++.+++.+++++.+
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (588)
T PRK13657 75 LVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFM 154 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566667777778889999999999999999999999999999999999888888888888888888888889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 006489 217 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 296 (643)
Q Consensus 217 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (643)
+|++++++++++++++++..++.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.++|.+..++..+...+
T Consensus 155 ~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (588)
T PRK13657 155 NWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMP 234 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888889999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006489 297 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLD 376 (643)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~ 376 (643)
..+.......+.+++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..+..+..+.+|+.++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~ 314 (588)
T PRK13657 235 VLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVED 314 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888888888888888899999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE
Q 006489 377 RVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 456 (643)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I 456 (643)
.+++.+......+.....+.|+++||+|+||++ +++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I 392 (588)
T PRK13657 315 AVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI 392 (588)
T ss_pred CCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 755432211111111223569999999999853 469999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 006489 457 LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 536 (643)
Q Consensus 457 ~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~ 536 (643)
++||+|+++++.+++|++|+||||+|++|+|||||||+++++ +.+|++++++++.+++++++.++|+|+||.+||+|.+
T Consensus 393 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~ 471 (588)
T PRK13657 393 LIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQ 471 (588)
T ss_pred EECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCC
Confidence 999999999999999999999999999999999999999986 7899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEc
Q 006489 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 616 (643)
Q Consensus 537 LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G 616 (643)
|||||||||+||||++++|+|+|||||||+||+++|+.+.+.|++..+++|+|+||||++.++.||+|++|++|+++|.|
T Consensus 472 LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g 551 (588)
T PRK13657 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESG 551 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhhcCChHHHHHHHHhcC
Q 006489 617 THEELLSKGGVYTALVKRQLQE 638 (643)
Q Consensus 617 ~~~eL~~~~g~y~~l~~~q~~~ 638 (643)
+|+||+++++.|+++++.+..+
T Consensus 552 ~~~~l~~~~~~y~~l~~~~~~~ 573 (588)
T PRK13657 552 SFDELVARGGRFAALLRAQGML 573 (588)
T ss_pred CHHHHHHCCChHHHHHHHhhcc
Confidence 9999999999999999876543
No 21
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-95 Score=757.37 Aligned_cols=552 Identities=32% Similarity=0.483 Sum_probs=492.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 76 TVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRK 155 (643)
Q Consensus 76 ~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 155 (643)
+++.+.+-.+...+|.+++..+|.+......+ ..++.....++.++++.+...+++.++.+.+.++.+++.++...
T Consensus 36 l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~----a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~ 111 (591)
T KOG0057|consen 36 LGLLLGAKILNVQVPFIFKLIIDGLNDADGNP----AVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSS 111 (591)
T ss_pred HHHHHhhhHhheehHHHHHHHHhhhhhcccCc----chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333446778889999999999875222212 11233345667777888889999999999999999999999999
Q ss_pred HHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Q 006489 156 NLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFA-TSWKLTLLALVVVPAISVA 234 (643)
Q Consensus 156 ~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~l~~~~l~~~~ 234 (643)
++|++++++++++|.+..+|++.+.+.+....+.+++...+..++..++.+.++...+++ ..+..+++.+..+..+..+
T Consensus 112 ~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~ 191 (591)
T KOG0057|consen 112 DVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAF 191 (591)
T ss_pred HHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhee
Confidence 999999999999999999999999999999999999888888777776666666644443 5667777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 235 VRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTL 314 (643)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (643)
.........+.+++...+.+...+.+.|++.|-++||.||.|+++.++|.....++.+...+.....++.+.....+.+.
T Consensus 192 Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv 271 (591)
T KOG0057|consen 192 TIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSV 271 (591)
T ss_pred EEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHH
Confidence 77777888888999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCC
Q 006489 315 SVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQD 394 (643)
Q Consensus 315 ~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~ 394 (643)
..+.+++.+..-+.++.+|+|+++....+..++..|+..++..+..+.++...+..++...+......+. +.|.....
T Consensus 272 ~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~i~~~~ 349 (591)
T KOG0057|consen 272 ALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPIELFG 349 (591)
T ss_pred HHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCCcccCC
Confidence 8888888899889999999999999999999999999999999999999988888777665443322221 22333445
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
+.|+|+||+|+|++ .+++|+++||+|++||+|||||+|||||||++++|+||++ ++|+|+|||+|+++++++++|+.
T Consensus 350 ~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~ 426 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQS 426 (591)
T ss_pred CcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhh
Confidence 67999999999985 4579999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC
Q 006489 475 ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 554 (643)
Q Consensus 475 i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~ 554 (643)
|||||||..||++||.+||.||++ .+++||+.++|+.+++||.|.+||+||+|.|||+|..||||||||++||||++||
T Consensus 427 Ig~VPQd~~LFndTIl~NI~YGn~-sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKd 505 (591)
T KOG0057|consen 427 IGVVPQDSVLFNDTILYNIKYGNP-SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKD 505 (591)
T ss_pred eeEeCCcccccchhHHHHhhcCCC-CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcC
Confidence 999999999999999999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHHH
Q 006489 555 PRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKR 634 (643)
Q Consensus 555 p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~ 634 (643)
|||++||||||+||++||+.+.+.|++...+||+|+|+||++++++||+|+++|+|+++|.|+|+||+++.+.|+++|..
T Consensus 506 a~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~ 585 (591)
T KOG0057|consen 506 APILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTT 585 (591)
T ss_pred CCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Hhc
Q 006489 635 QLQ 637 (643)
Q Consensus 635 q~~ 637 (643)
|..
T Consensus 586 ~~~ 588 (591)
T KOG0057|consen 586 QTS 588 (591)
T ss_pred ccc
Confidence 754
No 22
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=3.8e-93 Score=803.59 Aligned_cols=567 Identities=29% Similarity=0.433 Sum_probs=507.5
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 57 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 136 (643)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (643)
.+++++++++++++.+.+.++++++..++.++.|++++.++|.+..... . . .+++..++..++..+..+
T Consensus 6 ~~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~--------~--~-~~~~~~~~~~~~~~~~~~ 74 (585)
T TIGR01192 6 VYVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD--------V--L-PTLALWAGFGVFNTIAYV 74 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------H--H-HHHHHHHHHHHHHHHHHH
Confidence 3567888899999999999999999999999999999999998754321 0 0 111112223344555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 137 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFAT 216 (643)
Q Consensus 137 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (643)
+..++..++..++..++|.++|+|++++|+.+|+++++|++++|+++|++.+.+++...+...+..++.+++.+++++.+
T Consensus 75 ~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (585)
T TIGR01192 75 LVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAM 154 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777788888889999999999999999999999999999999999998888888888888888888899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 006489 217 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 296 (643)
Q Consensus 217 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (643)
+|++++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+
T Consensus 155 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (585)
T TIGR01192 155 DWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYP 234 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006489 297 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLD 376 (643)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~ 376 (643)
..+..+....+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..+..++.+.+|+.++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~ 314 (585)
T TIGR01192 235 VLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLED 314 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888877777777788888888999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE
Q 006489 377 RVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 456 (643)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I 456 (643)
.+++..+.....+.+...+.|+++||+|+|+++ +++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 392 (585)
T TIGR01192 315 SVFQREEPADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI 392 (585)
T ss_pred CCccccCCccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE
Confidence 765432211111111233569999999999853 468999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 006489 457 LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 536 (643)
Q Consensus 457 ~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~ 536 (643)
++||.|+++++.+++|++++||||+|++|++|++|||+++.+ ++++++++++++.+++++++.++|+|+||.+||+|.+
T Consensus 393 ~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~ 471 (585)
T TIGR01192 393 LIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE-GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNR 471 (585)
T ss_pred EECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCC
Confidence 999999999999999999999999999999999999999976 7899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEc
Q 006489 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 616 (643)
Q Consensus 537 LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G 616 (643)
|||||||||+|||||+++|+|+|||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+++|.|
T Consensus 472 LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g 551 (585)
T TIGR01192 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKG 551 (585)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhhcCChHHHHHHHHhc
Q 006489 617 THEELLSKGGVYTALVKRQLQ 637 (643)
Q Consensus 617 ~~~eL~~~~g~y~~l~~~q~~ 637 (643)
+|+|+++++|.|+++++.|.-
T Consensus 552 ~~~~l~~~~~~y~~l~~~~~~ 572 (585)
T TIGR01192 552 SFQELIQKDGRFYKLLRRSGL 572 (585)
T ss_pred CHHHHHHCCChHHHHHHhCcc
Confidence 999999999999999987753
No 23
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.6e-94 Score=805.47 Aligned_cols=524 Identities=24% Similarity=0.368 Sum_probs=467.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 60 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRA 139 (643)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (643)
+++++.+++++.+++.++++++..++.++.|++++.++|.+..... .. ....+++.++++.++..++.++..
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~ 74 (529)
T TIGR02868 3 RILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-------VL-YLSVAAVAVRAFGIGRAVFRYLER 74 (529)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-------hH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888999999999999999999999997653211 01 111122223344566777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006489 140 WLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWK 219 (643)
Q Consensus 140 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (643)
++..+.+.++..++|.++|+|++++|..+|++.++|++++|+++|++.+++.+...+..++..++.++++++++++++|+
T Consensus 75 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (529)
T TIGR02868 75 LVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVP 154 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999988888899998999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Q 006489 220 LTLLALVVVPAISVAVRKFG-RFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQA 298 (643)
Q Consensus 220 l~l~~l~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 298 (643)
+++++++++|++.++..++. +..++..++..+..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+..
T Consensus 155 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (529)
T TIGR02868 155 AALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAA 234 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888776664444 44466677788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 006489 299 KVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRV 378 (643)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~ 378 (643)
+..+....+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..++++..+.+|+.++++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~ 314 (529)
T TIGR02868 235 RATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAK 314 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 98888888888888888888899999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCC--CCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE
Q 006489 379 SSMPKSGNQ--CPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 456 (643)
Q Consensus 379 ~~~~~~~~~--~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I 456 (643)
++.+....+ .+..+..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 392 (529)
T TIGR02868 315 GPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV 392 (529)
T ss_pred CCcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 653321111 1111223579999999999854 369999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 006489 457 LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 536 (643)
Q Consensus 457 ~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~ 536 (643)
++||+|++++ .+++|++|+||||||+||+|||||||++|+| +++|+++++|++.|++++||++||+||||+|||+|.+
T Consensus 393 ~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~ 470 (529)
T TIGR02868 393 TLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGAR 470 (529)
T ss_pred EECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCC-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCc
Confidence 9999999999 9999999999999999999999999999987 7999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCc
Q 006489 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRL 595 (643)
Q Consensus 537 LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl 595 (643)
|||||||||+||||++++||||||||||||||++||+.|++.+++..+++|+|+||||+
T Consensus 471 LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 471 LSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999999988999999999996
No 24
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.6e-93 Score=808.15 Aligned_cols=569 Identities=41% Similarity=0.653 Sum_probs=512.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 58 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 137 (643)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (643)
++.++++++++++.+.+.+++.++..++.++.|++++.++|.+..... ...+..++++++++.++..++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 77 (576)
T TIGR02204 6 LAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS--------SGLLNRYFAFLLVVALVLALGTAA 77 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788888888888889999999999999999999999998553221 111222333444555566677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006489 138 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 217 (643)
Q Consensus 138 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (643)
+.++..+++.++...+|..+|+++++.|..+|++.++|++++|+++|++.+++++...+..++.+++.+++++++++.++
T Consensus 78 ~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (576)
T TIGR02204 78 RFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITS 157 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 006489 218 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 297 (643)
Q Consensus 218 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 297 (643)
|++++++++.+|+++++..++.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.++|++..++..+...+.
T Consensus 158 ~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (576)
T TIGR02204 158 PKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQR 237 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006489 298 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 377 (643)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~ 377 (643)
.+.......+..++..+..++++++|++++..|.+|+|.++++..+...+..|+..++..+..+..++.+.+|+.++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~ 317 (576)
T TIGR02204 238 IRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQA 317 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 87777777766666667777888899999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCC-CCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE
Q 006489 378 VSSMPKSG-NQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 456 (643)
Q Consensus 378 ~~~~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I 456 (643)
+++.+... ......+..+.|+++||+|+||++.++++|+|+||+|+|||+++|+|+||||||||+++|+|+|+|++|+|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I 397 (576)
T TIGR02204 318 EPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397 (576)
T ss_pred CCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 65422111 11111122356999999999986433679999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 006489 457 LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 536 (643)
Q Consensus 457 ~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~ 536 (643)
++||+|+++++.+++|++|+|+||+|++|+|||||||++++| +.++++++++++.++++++++++|+|+||.+||+|.+
T Consensus 398 ~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~ 476 (576)
T TIGR02204 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP-DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVT 476 (576)
T ss_pred EECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCC-CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCc
Confidence 999999999999999999999999999999999999999986 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEc
Q 006489 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 616 (643)
Q Consensus 537 LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G 616 (643)
|||||||||+||||++++|+|+|||||||+||+++|+.+.+.+++..+++|+|+||||++.++.||+|++|++|+++|.|
T Consensus 477 LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g 556 (576)
T TIGR02204 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQG 556 (576)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeee
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhhcCChHHHHHHHH
Q 006489 617 THEELLSKGGVYTALVKRQ 635 (643)
Q Consensus 617 ~~~eL~~~~g~y~~l~~~q 635 (643)
+|++++++++.|++|++.|
T Consensus 557 ~~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 557 THAELIAKGGLYARLARLQ 575 (576)
T ss_pred cHHHHHHcCChHHHHHhhc
Confidence 9999999999999999766
No 25
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.8e-93 Score=799.82 Aligned_cols=549 Identities=30% Similarity=0.503 Sum_probs=490.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 78 ALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNL 157 (643)
Q Consensus 78 ~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 157 (643)
+.++..++.++.|++++.++|.+...... ...+..++++++++.++..++.+++.++..+.+.++..++|.++
T Consensus 3 ~~~~~~~~~~~~p~~~~~iid~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 75 (569)
T PRK10789 3 LLIIIAMLQLIPPKVVGIIVDGVTEQHMT-------TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDF 75 (569)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHhccCCcc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888999999999987543211 11122334445555566777888888888899999999999999
Q ss_pred HHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHH
Q 006489 158 FSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFM-FATSWKLTLLALVVVPAISVAVR 236 (643)
Q Consensus 158 ~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~l~~l~~~~l~~~~~~ 236 (643)
|+|++++|+.+|++.++|++++|+++|++.+...+...+..++..++.++++++++ +.++|++++++++++|+++++..
T Consensus 76 ~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~ 155 (569)
T PRK10789 76 YRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIK 155 (569)
T ss_pred HHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877777777777666666666655 57999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 237 KFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSV 316 (643)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (643)
++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+..+........+..+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (569)
T PRK10789 156 RYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMAN 235 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999998888888887777777777778
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCc
Q 006489 317 IVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGE 396 (643)
Q Consensus 317 ~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 396 (643)
++++++|++++.+|.+|+|.++++..+...+..|+..++..+..+..++.+.+|+.++++.+++...... +.+...+.
T Consensus 236 ~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~--~~~~~~~~ 313 (569)
T PRK10789 236 LLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE--PVPEGRGE 313 (569)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC--CCCCCCCc
Confidence 8888999999999999999999999999999999999999999999999999999999987654322111 11123457
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++|+|++. +.++|+|+||+|+||++++||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+
T Consensus 314 I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 392 (569)
T PRK10789 314 LDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA 392 (569)
T ss_pred EEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE
Confidence 9999999999864 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 006489 477 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 556 (643)
Q Consensus 477 ~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~ 556 (643)
||||+|++|++||||||+++++ ++++++++++++.+++++++.++|+|+||.+||+|.+|||||||||+||||++++|+
T Consensus 393 ~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ 471 (569)
T PRK10789 393 VVSQTPFLFSDTVANNIALGRP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE 471 (569)
T ss_pred EEccCCeeccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999976 789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHh
Q 006489 557 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 636 (643)
Q Consensus 557 IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~q~ 636 (643)
|+|||||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|+|+|+||+++++.|+++++.|.
T Consensus 472 illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 551 (569)
T PRK10789 472 ILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQ 551 (569)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhh
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999998765
Q ss_pred c
Q 006489 637 Q 637 (643)
Q Consensus 637 ~ 637 (643)
.
T Consensus 552 ~ 552 (569)
T PRK10789 552 L 552 (569)
T ss_pred h
Confidence 4
No 26
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=9.1e-93 Score=868.36 Aligned_cols=566 Identities=22% Similarity=0.284 Sum_probs=480.1
Q ss_pred chhHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 55 NVGFGRVLALAKPDAGKL-IIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSV 133 (643)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (643)
...|..++.|++...+.. ++.+++.++..++....|++++.+.|....... ... . ..++.+++++.++..+
T Consensus 949 ~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~-~~~----~---~~~~~iy~~l~i~~~~ 1020 (1522)
T TIGR00957 949 QVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGT-QNN----T---SLRLSVYGALGILQGF 1020 (1522)
T ss_pred cccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-CCC----c---chHHHHHHHHHHHHHH
Confidence 345667777777643333 233444445556667778888888764221100 000 0 0112234444555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 134 CTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFM 213 (643)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l 213 (643)
+.+++.++....+.+...++|.++|++++++|+.||+++++|+++||+++|++.+++.+...+..++..++.+++.++++
T Consensus 1021 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~ 1100 (1522)
T TIGR00957 1021 AVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVI 1100 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888899999999999999999999999999999999999999999999999998999999998888888888
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHH
Q 006489 214 FATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKL 293 (643)
Q Consensus 214 ~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 293 (643)
+..+|++++++++++++++++..++.+..++..+...+..++..+++.|+++|+++||+|++|+.+.+++.+..+...+.
T Consensus 1101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~ 1180 (1522)
T TIGR00957 1101 LLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKA 1180 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 88888887777777777777777777888888888888999999999999999999999999999999998888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 294 GLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTI-TGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVF 372 (643)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~ 372 (643)
.+.......+......++..+ ++++++++.+. .+.+++|.+.+++.|...+..|+..+...+..+..+.++++|+.
T Consensus 1181 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~ 1257 (1522)
T TIGR00957 1181 YYPSIVANRWLAVRLECVGNC---IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLK 1257 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555555555544444332 33344444444 58899999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCC--CC-CCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 373 QLLDRVSSMPK--SG-NQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 373 ~~l~~~~~~~~--~~-~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
++++.++|.+. .. .+.+.++..+.|+|+||+|+|+++ .+++|+|+||+|+|||+|||||+||||||||+++|+|+|
T Consensus 1258 ~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~ 1336 (1522)
T TIGR00957 1258 EYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN 1336 (1522)
T ss_pred HHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 99987765431 11 111123456789999999999865 357999999999999999999999999999999999999
Q ss_pred CCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCccccc
Q 006489 450 DPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTF 529 (643)
Q Consensus 450 ~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ 529 (643)
+|++|+|+|||+|+++++.+++|++|+||||||+||+|||||||.+.. +++|+++++|++.|+++++|+++|+||||+
T Consensus 1337 ~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~--~~sdeei~~al~~a~l~~~I~~lp~GLdt~ 1414 (1522)
T TIGR00957 1337 ESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS--QYSDEEVWWALELAHLKTFVSALPDKLDHE 1414 (1522)
T ss_pred cCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc--CCCHHHHHHHHHHcCcHHHHhhCccCCCce
Confidence 999999999999999999999999999999999999999999999652 699999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeC
Q 006489 530 VGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 609 (643)
Q Consensus 530 vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~ 609 (643)
|||+|.+|||||||||||||||+++|+||||||||||||++||+.|++.|++.+++||+|+||||++++++||+|+|||+
T Consensus 1415 v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1415 CAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDK 1494 (1522)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcChhHHhhcCChHHHHHHH
Q 006489 610 GEIVESGTHEELLSKGGVYTALVKR 634 (643)
Q Consensus 610 G~Ive~G~~~eL~~~~g~y~~l~~~ 634 (643)
|+|+|.|+|+||++++|.|++|+++
T Consensus 1495 G~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1495 GEVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred CEEEEECCHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999999976
No 27
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-92 Score=734.37 Aligned_cols=558 Identities=26% Similarity=0.344 Sum_probs=489.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 66 KPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSA 145 (643)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (643)
+..++.+.++++++++..+.+...-.+.+++|..-.-... . ....+.....++=++.+..++.+|...+..+..
T Consensus 12 ~~~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~-----~-~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~A 85 (573)
T COG4987 12 KRHKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGL-----A-YIFNVMLPSAGVRGLAILRTAARYVERLVSHDA 85 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3367788889999998888888888899999975432211 0 111222334455566778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006489 146 SERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLAL 225 (643)
Q Consensus 146 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l 225 (643)
..++..++|.++|+++...+..-..+.++||++||+..|++.+++.+...+.+++..++.+.+..+.+.+++|++++...
T Consensus 86 tfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~ 165 (573)
T COG4987 86 TFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLG 165 (573)
T ss_pred HHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888888888889999887666
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 226 VVVP-AISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLF 304 (643)
Q Consensus 226 ~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (643)
..+. +.+++...+.+..++..++....++...+.+.|.++|...++.||.++.+.+.+.+....+.+...+..+...+.
T Consensus 166 ~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~ 245 (573)
T COG4987 166 LILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLS 245 (573)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 444556677888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 006489 305 FGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLS-SLYTVAMKAAGASRRVFQLLDRVSSMPK 383 (643)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~-~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 383 (643)
.+...++..+..+..+.+.+..+-.|..+.....++........+++..+. ..+....+...++.|+.++.+.+++...
T Consensus 246 ~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~ 325 (573)
T COG4987 246 DAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTF 325 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCC
Confidence 998888888877744444555566677775444444444455566666666 7778899999999999999998877654
Q ss_pred CCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeC
Q 006489 384 SGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPL 463 (643)
Q Consensus 384 ~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i 463 (643)
+..+.+. ... .++++||||+||+. ++++|+|+||++++||+|||+|+||||||||+++|.|.|+|++|+|+.+|+|+
T Consensus 326 ~~~~~~~-~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~ 402 (573)
T COG4987 326 PDEQTAT-TGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEI 402 (573)
T ss_pred CccccCC-ccc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcCh
Confidence 4221211 122 69999999999986 67899999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 464 VEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 464 ~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
++++.+.+|+.|++++|.++||++|+|||+.+++| ++|||+++++++.++|++++++.|+||+|.+||+|.+|||||||
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~-~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r 481 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP-DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence 99999999999999999999999999999999998 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhh
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
|++|||+|++|+|++||||||.+||++||+.+.+.|.+..++||+|+||||+.-++.||+|+|||+|+|+|+|+|.||++
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHH
Q 006489 624 KGGVYTALVK 633 (643)
Q Consensus 624 ~~g~y~~l~~ 633 (643)
++|.|+++++
T Consensus 562 ~~g~~~~l~q 571 (573)
T COG4987 562 NNGRYKRLYQ 571 (573)
T ss_pred cccHHHHHhc
Confidence 9999999875
No 28
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-92 Score=822.75 Aligned_cols=550 Identities=23% Similarity=0.316 Sum_probs=496.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 61 VLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAW 140 (643)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (643)
++.+++.+++.+++..++.++.....++.|.+++.+|+++..... + ....+.+++++++..+++.++.....+
T Consensus 192 ~~al~~~f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~-~------~~~g~~~a~~lf~~~~l~~l~~~~~~~ 264 (1381)
T KOG0054|consen 192 LRALLRTFGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRL-P------LNNGYLLAVLLFLASLLQSLLLHQYFF 264 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCc-c------cchhHHHHHHHHHHHHHHHHHHhHHHH
Confidence 445667789999888888888888899999999999999876522 1 222345677778888889999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006489 141 LFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKL 220 (643)
Q Consensus 141 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 220 (643)
...+.+.++...+...+|+|.++++.......++|+++|.++.|++++.++.. +++.+|..++++++++++++...++.
T Consensus 265 ~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~-~~h~~w~~Plqi~~~l~lLy~~LG~s 343 (1381)
T KOG0054|consen 265 VSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAAC-FLHLLWSAPLQIILALYLLYGLLGPS 343 (1381)
T ss_pred HHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 99999999999999999999999999998889999999999999999999855 68999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 221 TLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKV 300 (643)
Q Consensus 221 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 300 (643)
++++++++.++++++.+..++.++.+.+.++.++++.+.++|.++||++||+|+||+.|.++.++.++++.+...|....
T Consensus 344 a~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~ 423 (1381)
T KOG0054|consen 344 ALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYL 423 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 006489 301 VGLFFGGLNAASTLSVIVVVIYGANL-TITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVS 379 (643)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 379 (643)
.++..........++. ++.++.+. ...+.+++...|+.++++..+..|+..+|..+..+.++.++.+|+.+++..++
T Consensus 424 ~~~~~~~~~~~p~lv~--~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e 501 (1381)
T KOG0054|consen 424 SALNSFLNFFSPVLVS--VVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEE 501 (1381)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 8887776555554443 44555555 56778999899999999999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEC
Q 006489 380 SMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLN 459 (643)
Q Consensus 380 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~id 459 (643)
..++.....+..+.+..|+++|.+|+|++..+.+.|+||||+|++|+.+||||++|||||||+.+|+|+++..+|+|.++
T Consensus 502 ~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~ 581 (1381)
T KOG0054|consen 502 LDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVN 581 (1381)
T ss_pred cCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEc
Confidence 55443321222334457999999999987435569999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCH
Q 006489 460 GVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 539 (643)
Q Consensus 460 g~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSG 539 (643)
| .+|||||+||||+|||||||+||. ++++++|++++++|+|++|++.||.|+.|+|||+|.||||
T Consensus 582 g-------------siaYv~Q~pWI~ngTvreNILFG~--~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSG 646 (1381)
T KOG0054|consen 582 G-------------SVAYVPQQPWIQNGTVRENILFGS--PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSG 646 (1381)
T ss_pred C-------------eEEEeccccHhhCCcHHHhhhcCc--cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcH
Confidence 9 799999999999999999999994 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecccCCCCHH-HHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcCh
Q 006489 540 GQKQRVAIARALMMNPRILLLDEATSALDAE-SEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTH 618 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~TSaLD~~-te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~ 618 (643)
||||||+||||+|+|+|||+||||.||||+| +.+.+.+||+..+++||+|+|||+++++++||+|++|++|+|+|.|+|
T Consensus 647 GQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty 726 (1381)
T KOG0054|consen 647 GQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTY 726 (1381)
T ss_pred hHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCH
Confidence 9999999999999999999999999999999 778888899999999999999999999999999999999999999999
Q ss_pred hHHhhcCChHHHHHHHH
Q 006489 619 EELLSKGGVYTALVKRQ 635 (643)
Q Consensus 619 ~eL~~~~g~y~~l~~~q 635 (643)
+||++.++.|.++..+.
T Consensus 727 ~el~~~~~~~~~l~~~~ 743 (1381)
T KOG0054|consen 727 EELLKSGGDFAELAHEE 743 (1381)
T ss_pred HHHHhcchhHHHHhhcc
Confidence 99999999999986543
No 29
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.7e-91 Score=853.96 Aligned_cols=567 Identities=21% Similarity=0.298 Sum_probs=453.3
Q ss_pred cchhHHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 006489 54 ANVGFGRVLALAKPDAG--KLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVG 131 (643)
Q Consensus 54 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (643)
....|..++.|++...+ .+.+.+++.++..++....+++++.+.|........ . ..++++++++.++.
T Consensus 897 g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~--------~--~~~~~i~~~l~~~~ 966 (1622)
T PLN03130 897 GVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHG--------P--LFYNLIYALLSFGQ 966 (1622)
T ss_pred CccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc--------h--hHHHHHHHHHHHHH
Confidence 34567777788766332 223334444556666777788888888753321110 0 11233455556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 132 SVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLG 211 (643)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~ 211 (643)
.++.+++.++....+.+...++|.++|++++++|+.||+++++|+++||+++|++.+++.+...+..++..++.+++.++
T Consensus 967 ~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i 1046 (1622)
T PLN03130 967 VLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFV 1046 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888999999999999999999999999999999999999999999999999999998888888888888888888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHH
Q 006489 212 FMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETL 291 (643)
Q Consensus 212 ~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 291 (643)
+++.++|...++++.++.+++.+..++.+..++..+......++..+++.|+++|+++||+|++|+++.+++.+..+...
T Consensus 1047 ~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~ 1126 (1622)
T PLN03130 1047 LIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNI 1126 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 88888875544444443334444455556667777777788899999999999999999999999987777666655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 292 KLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGS-MT-----PGALTSFILYSLTVGSSVSGLSSLYTVAMKAA 365 (643)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~-lt-----~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 365 (643)
+..+.......+......++. .+++++.+.+.+..+. .. .+.+..++++...+..++..+...+..+....
T Consensus 1127 ~~~~~~~~~~~wl~~~l~~~~---~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~ 1203 (1622)
T PLN03130 1127 RFTLVNMSSNRWLAIRLETLG---GLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSL 1203 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433332222222222222222 2222333334344332 11 23333344455666777777888888899999
Q ss_pred HHHHHHHHHhcccCCCCCC---CCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHH
Q 006489 366 GASRRVFQLLDRVSSMPKS---GNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIA 442 (643)
Q Consensus 366 ~~~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl 442 (643)
.+++|+.++++.++|.+.. ..+.+.++.+|.|+|+||+|+|+++ .+++|+|+||+|+|||+|||||+||||||||+
T Consensus 1204 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl 1282 (1622)
T PLN03130 1204 NAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSML 1282 (1622)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHH
Confidence 9999999999877665321 1122223445789999999999754 45799999999999999999999999999999
Q ss_pred HHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcC
Q 006489 443 NLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNF 522 (643)
Q Consensus 443 ~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~l 522 (643)
++|+|+|+|++|+|+|||+|+++++++++|++|+||||||.||+|||||||.+++ +++|+++++||+.|+++++|+++
T Consensus 1283 ~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~--~~tdeei~~Al~~a~l~~~I~~l 1360 (1622)
T PLN03130 1283 NALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN--EHNDADLWESLERAHLKDVIRRN 1360 (1622)
T ss_pred HHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC--CCCHHHHHHHHHHcCcHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999984 58999999999999999999999
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcC
Q 006489 523 PEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSAD 602 (643)
Q Consensus 523 p~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD 602 (643)
|+||||+|||+|.+|||||||||||||||+++|+||||||||||||++||+.|+++|++.+++||+|+||||++++++||
T Consensus 1361 p~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~D 1440 (1622)
T PLN03130 1361 SLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD 1440 (1622)
T ss_pred ccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCEEEEEcChhHHhhc-CChHHHHHHHHh
Q 006489 603 TVAVVSDGEIVESGTHEELLSK-GGVYTALVKRQL 636 (643)
Q Consensus 603 ~Iivl~~G~Ive~G~~~eL~~~-~g~y~~l~~~q~ 636 (643)
+|+|||+|+|+|.|+|+||+++ +|.|++|++.+.
T Consensus 1441 rIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1441 RILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 9999999999999999999987 799999998653
No 30
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1e-90 Score=778.52 Aligned_cols=528 Identities=26% Similarity=0.391 Sum_probs=474.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 68 DAGKLIIATVALLIASVSSILIPKFGGKIIDIVS-GDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSAS 146 (643)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (643)
+++.+.++++++++..++.++.|+++++++|.+. .... ...+..++++++++.++..++.+++.++..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (529)
T TIGR02857 1 ARRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP--------LAELLPALGALALAVLLRALLGWLGERAAARAA 72 (529)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888899999999999999999999874 3211 122233444555666778888999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006489 147 ERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALV 226 (643)
Q Consensus 147 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~ 226 (643)
.++..++|..+|++++++|..+|++.++|++++|+++|++.+++++...+..++..++.+++++++++.++|++++++++
T Consensus 73 ~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~ 152 (529)
T TIGR02857 73 AAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLL 152 (529)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 227 VVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFG 306 (643)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (643)
++|+..++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+.......
T Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (529)
T TIGR02857 153 TAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSA 232 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888888888889999999999999999999999999999999999999999999999888888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 006489 307 GLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGN 386 (643)
Q Consensus 307 ~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 386 (643)
+..++..+..++++.++++.+.+|.+|+|.++++..++..+..|+..+...+..+++++.+.+|+.++++.+++.....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~- 311 (529)
T TIGR02857 233 VLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA- 311 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-
Confidence 7777777776666667777778999999999999999999999999999999999999999999999998543322111
Q ss_pred CCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCC
Q 006489 387 QCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI 466 (643)
Q Consensus 387 ~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~ 466 (643)
..+ ....+.|+++||+|+||+. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|++++
T Consensus 312 ~~~-~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~ 389 (529)
T TIGR02857 312 PVT-AAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADA 389 (529)
T ss_pred CCC-CCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhC
Confidence 111 1123479999999999865 45799999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHH
Q 006489 467 SHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 546 (643)
Q Consensus 467 ~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRia 546 (643)
+.+++|++|+||||||++|++||||||+++.+ +++++++++|++.++++++++++|+||||.+||+|.+|||||||||+
T Consensus 390 ~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~ 468 (529)
T TIGR02857 390 DADSWRDQIAWVPQHPFLFAGTIAENIRLARP-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLA 468 (529)
T ss_pred CHHHHHhheEEEcCCCcccCcCHHHHHhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHH
Confidence 99999999999999999999999999999976 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEE
Q 006489 547 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV 607 (643)
Q Consensus 547 lARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl 607 (643)
||||++++|+|+|||||||+||+++|+.+.+.+++..+++|+|+||||+++++.||+|++|
T Consensus 469 laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 469 LARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999999999999988899999999999999999999986
No 31
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.2e-89 Score=771.14 Aligned_cols=541 Identities=25% Similarity=0.338 Sum_probs=479.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 66 KPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSA 145 (643)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (643)
+++++.++..++++++..++.++.|++++.++|.+..... ...+..++++++++.++..++.+++.++..+.
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--------VPTLLMLTVLALGLYLFLGLLDALRSFVLVRI 73 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888889999999999999999999997753221 11233344555666677788899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006489 146 SERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLAL 225 (643)
Q Consensus 146 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l 225 (643)
+.++..++|.++|+|++++|+. ..++..+++++|++.+++++.......+...+..++.+++++.++|+++++++
T Consensus 74 ~~~~~~~lr~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 148 (544)
T TIGR01842 74 GEKLDGALNQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILAL 148 (544)
T ss_pred HHHHHHHHHHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999984 23567888999999999987763333344444455556788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 226 VVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFF 305 (643)
Q Consensus 226 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (643)
+++|+++++..+..+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..+...
T Consensus 149 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (544)
T TIGR01842 149 GGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLS 228 (544)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777778888888899999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 006489 306 GGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSG 385 (643)
Q Consensus 306 ~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 385 (643)
.+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..++++..+.+|+.++++.+++.....
T Consensus 229 ~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 308 (544)
T TIGR01842 229 NLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM 308 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC
Confidence 87777788888888899999999999999999999999999999999999999999999999999999998765432211
Q ss_pred CCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCC
Q 006489 386 NQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE 465 (643)
Q Consensus 386 ~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~ 465 (643)
. .+...+.|+++||+|+|++. ++++|+|+||++++||+++|||+||||||||+++|+|+|+|++|+|.+||+|+++
T Consensus 309 -~--~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 309 -P--LPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ 384 (544)
T ss_pred -C--CCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhh
Confidence 1 11233579999999999854 4579999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 466 ISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 466 ~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
++.+++|++++||||+|++|++|+||||+++++ ++++++++++++.++++++++++|+|+||.+||+|.+|||||||||
T Consensus 385 ~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl 463 (544)
T TIGR01842 385 WDRETFGKHIGYLPQDVELFPGTVAENIARFGE-NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRI 463 (544)
T ss_pred CCHHHHhhheEEecCCcccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHH
Confidence 999999999999999999999999999998865 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
+||||++++|+|+|||||||+||+++++.+.++++++. +++|+|+||||+++++.||+|++|++|+++|.|+|+||+++
T Consensus 464 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 464 ALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred HHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 99999999999999999999999999999999999875 68999999999999999999999999999999999998753
No 32
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.6e-90 Score=842.16 Aligned_cols=568 Identities=20% Similarity=0.269 Sum_probs=464.5
Q ss_pred chhHHHHHHHhhhhHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 55 NVGFGRVLALAKPDAGKLI-I-ATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGS 132 (643)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (643)
...|+.++.|++...+... + .+++.++..++....+++++.|.+.-..... .. ++.+++++.++..
T Consensus 945 ~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~--------~~----~l~~y~~~~~~~~ 1012 (1560)
T PTZ00243 945 SVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSA--------AT----YLYVYLGIVLLGT 1012 (1560)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc--------cc----HHHHHHHHHHHHH
Confidence 3467777777776443322 2 2222233444555555555555432111000 00 1112222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 133 VCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGF 212 (643)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 212 (643)
++..++.+.....+.+...++|..+|+++++.|+.||+++++|+++||+++|++.+++.+...+..++..++.+++.+++
T Consensus 1013 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~ 1092 (1560)
T PTZ00243 1013 FSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILV 1092 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555566677889999999999999999999999999999999999999999999898888888888888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHH
Q 006489 213 MFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLK 292 (643)
Q Consensus 213 l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 292 (643)
+++.+|.+.++++.+..+++.+..++.+..++.++......++..+++.|+++|+++||+|+.|+.+.++|.+..+...+
T Consensus 1093 ~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~ 1172 (1560)
T PTZ00243 1093 TSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYS 1172 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 88888866655555444555566667778888888888999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 293 LGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLT--ITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRR 370 (643)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v--~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~r 370 (643)
..++......+......++..+..+++.+++.+.. ..+.+++|.+..++.+...+..|+..+...+..+..+..+++|
T Consensus 1173 ~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eR 1252 (1560)
T PTZ00243 1173 CSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVER 1252 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777666666666666666665555555554433 3456889999899999999999999999999999999999999
Q ss_pred HHHHhcccCCCC-C--------------------------CCCCC---CCCCCCCcEEEEeEEEECCCCCCCcceeceeE
Q 006489 371 VFQLLDRVSSMP-K--------------------------SGNQC---PLGDQDGEVELDDVWFAYPSRPNHMVLKGITL 420 (643)
Q Consensus 371 i~~~l~~~~~~~-~--------------------------~~~~~---~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl 420 (643)
+.++++..++++ . +..+. +.++..+.|+|+||+|+|++. .+++|+||||
T Consensus 1253 i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf 1331 (1560)
T PTZ00243 1253 LLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSF 1331 (1560)
T ss_pred HHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceE
Confidence 999996433211 0 00000 111234679999999999864 4579999999
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCC
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGK 500 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~ 500 (643)
+|++||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++.+++|++|+||||||+||+|||||||+++ .+
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~--~~ 1409 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPF--LE 1409 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcc--cC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 36
Q ss_pred CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC-CCEEEEecccCCCCHHHHHHHHHHH
Q 006489 501 ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN-PRILLLDEATSALDAESEYLVQDAM 579 (643)
Q Consensus 501 ~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~-p~IliLDE~TSaLD~~te~~i~~~i 579 (643)
++|+++++||+.|+++++|.++|+||||.|||+|.||||||||||||||||+++ |+||||||||||||++||+.|++.|
T Consensus 1410 ~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L 1489 (1560)
T PTZ00243 1410 ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATV 1489 (1560)
T ss_pred CCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 8999999999999999999999999
Q ss_pred HHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhc-CChHHHHHHHHhc
Q 006489 580 DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTALVKRQLQ 637 (643)
Q Consensus 580 ~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~-~g~y~~l~~~q~~ 637 (643)
++.+++||+|+||||++++++||+|+||++|+|+|.|+|+||+++ +|.|++|++.+.+
T Consensus 1490 ~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~ 1548 (1560)
T PTZ00243 1490 MSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGR 1548 (1560)
T ss_pred HHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 999999999999999999999999999999999999999999974 8999999987643
No 33
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.2e-90 Score=842.26 Aligned_cols=568 Identities=21% Similarity=0.305 Sum_probs=447.5
Q ss_pred cchhHHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 006489 54 ANVGFGRVLALAKPDAG--KLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVG 131 (643)
Q Consensus 54 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (643)
....|..++.|++..++ .+.+.+++.++..++.....++++.|.+.-... ... . ..++++++++.++.
T Consensus 894 g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~---~~~----~---~~~l~~y~~l~~~~ 963 (1495)
T PLN03232 894 GIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPK---SYS----P---GFYIVVYALLGFGQ 963 (1495)
T ss_pred CcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC---CCC----c---chHHHHHHHHHHHH
Confidence 34567778888877442 222233333334444444444555444321000 000 0 12334445556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 132 SVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLG 211 (643)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~ 211 (643)
.++.+++.++....+.+...++|.+++++++++|+.||+++++|+++||+++|++.+++.+...+..++..++.+++.++
T Consensus 964 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i 1043 (1495)
T PLN03232 964 VAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFA 1043 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888999999999999999999999999999999999999999999999999999999888888888888888887
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHH
Q 006489 212 FMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETL 291 (643)
Q Consensus 212 ~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 291 (643)
+++..++...++++.+..+++....++.+..++..+......++..+++.|+++|+++||+|++|+++.+++.+..+...
T Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~ 1123 (1495)
T PLN03232 1044 LIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNI 1123 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 77777754444333333333333344445566777788888999999999999999999999999988777776666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCC----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 292 KLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTIT-GSM----T-PGALTSFILYSLTVGSSVSGLSSLYTVAMKAA 365 (643)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~-g~l----t-~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 365 (643)
+..+.......+...... .+..+++++.+.+.+.. +.+ . .+.+..++.+...+..|+..+...+..+..+.
T Consensus 1124 ~~~~~~~~~~~wl~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~ 1200 (1495)
T PLN03232 1124 RFTLANTSSNRWLTIRLE---TLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSL 1200 (1495)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444332222222222111 12222223333444432 332 1 22333466777788889999999999999999
Q ss_pred HHHHHHHHHhcccCCCCCC-C--CCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHH
Q 006489 366 GASRRVFQLLDRVSSMPKS-G--NQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIA 442 (643)
Q Consensus 366 ~~~~ri~~~l~~~~~~~~~-~--~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl 442 (643)
.+++|+.++++.++|.+.. . .+.+.++..+.|+|+||+|+|+++ .+++|+|+||+|+|||+|||||+||||||||+
T Consensus 1201 ~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~ 1279 (1495)
T PLN03232 1201 NSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSML 1279 (1495)
T ss_pred HHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHH
Confidence 9999999999877664321 1 111223445789999999999654 46799999999999999999999999999999
Q ss_pred HHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcC
Q 006489 443 NLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNF 522 (643)
Q Consensus 443 ~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~l 522 (643)
++|+|+|+|++|+|+|||+|+++++.+++|++|+||||||+||+|||||||++++ +++|+++++|++.|+++++|+++
T Consensus 1280 ~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~--~~sdeei~~al~~a~l~~~I~~l 1357 (1495)
T PLN03232 1280 NALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS--EHNDADLWEALERAHIKDVIDRN 1357 (1495)
T ss_pred HHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--CCCHHHHHHHHHHcCCHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999984 69999999999999999999999
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcC
Q 006489 523 PEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSAD 602 (643)
Q Consensus 523 p~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD 602 (643)
|+||||+|||+|.+|||||||||||||||+++|+||||||||||||++||+.|+++|++.+++||+|+||||++++++||
T Consensus 1358 p~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~D 1437 (1495)
T PLN03232 1358 PFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCD 1437 (1495)
T ss_pred cCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCEEEEEcChhHHhhcC-ChHHHHHHHHhc
Q 006489 603 TVAVVSDGEIVESGTHEELLSKG-GVYTALVKRQLQ 637 (643)
Q Consensus 603 ~Iivl~~G~Ive~G~~~eL~~~~-g~y~~l~~~q~~ 637 (643)
+|+|||+|+|+|.|+|+||++++ +.|++|++.+..
T Consensus 1438 rIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1438 KILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred EEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 99999999999999999999875 599999987643
No 34
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.6e-89 Score=827.93 Aligned_cols=570 Identities=29% Similarity=0.413 Sum_probs=507.3
Q ss_pred chhHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 55 NVGFGRVLALAK-PDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSV 133 (643)
Q Consensus 55 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (643)
+..+..++++.. .+++.++++++++++..++.++.|++++.++|.+.... ....+++.++++.++..+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~-----------~~~~~~~~~~~~~i~~~~ 112 (1466)
T PTZ00265 44 KIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE-----------NVNDIIFSLVLIGIFQFI 112 (1466)
T ss_pred cccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------hHHHHHHHHHHHHHHHHH
Confidence 345777777754 47778888999999999999999999999999764211 011233445556667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 134 CTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFM 213 (643)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l 213 (643)
+.+++.++..+++.++..++|.++|++++++|..||++.++|++.++++.|++.+++.+...+..++..+++++++++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~ 192 (1466)
T PTZ00265 113 LSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWS 192 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHH
Q 006489 214 FATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKL 293 (643)
Q Consensus 214 ~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 293 (643)
|.++|.+++++++++|+++++..++.++.++..++..+..++..+.+.|+++|+++||+|+.|+.+.++|.+......+.
T Consensus 193 ~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~ 272 (1466)
T PTZ00265 193 LFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKY 272 (1466)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 294 GLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITG--------SMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAA 365 (643)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g--------~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 365 (643)
..+.....++...+..++..+..++++|+|++++.+| .+++|.+++++........++..+...+..++.+.
T Consensus 273 ~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~ 352 (1466)
T PTZ00265 273 ILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSL 352 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888888888888999999999999986 58899988877666655566667777889999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHH
Q 006489 366 GASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLI 445 (643)
Q Consensus 366 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL 445 (643)
.+++|+.++++.+++.+........+. .+.|+|+||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|
T Consensus 353 ~a~~ri~~ii~~~~~~~~~~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL 431 (1466)
T PTZ00265 353 EATNSLYEIINRKPLVENNDDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLI 431 (1466)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 999999999988765432111111111 2379999999999865445799999999999999999999999999999999
Q ss_pred HcCCCCCCCEEEE-CCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCC--------------------------
Q 006489 446 ERFYDPIKGKILL-NGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCD-------------------------- 498 (643)
Q Consensus 446 ~g~~~p~~G~I~i-dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-------------------------- 498 (643)
+|+|+|++|+|++ ||.|+++++..++|++|+||+|+|.||++||+|||.+|..
T Consensus 432 ~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (1466)
T PTZ00265 432 ERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKR 511 (1466)
T ss_pred HHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccc
Confidence 9999999999999 6799999999999999999999999999999999999731
Q ss_pred ------------------------------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 499 ------------------------------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 499 ------------------------------~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
.+++++++++||+.+++++|+.+||+||||.+|++|.+|||||||||+||
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIA 591 (1466)
T PTZ00265 512 NSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIA 591 (1466)
T ss_pred ccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHH
Confidence 13577899999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhhcCeEEEEeCC----------------
Q 006489 549 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDG---------------- 610 (643)
Q Consensus 549 RAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~aD~Iivl~~G---------------- 610 (643)
|||+++|+|||||||||+||+++|+.|++.|+++. +++|+|+||||+++++.||+|+||++|
T Consensus 592 RAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~ 671 (1466)
T PTZ00265 592 RAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPT 671 (1466)
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccc
Confidence 99999999999999999999999999999999886 489999999999999999999999986
Q ss_pred -------------------------------EEEEEcChhHHhh-cCChHHHHHHHHh
Q 006489 611 -------------------------------EIVESGTHEELLS-KGGVYTALVKRQL 636 (643)
Q Consensus 611 -------------------------------~Ive~G~~~eL~~-~~g~y~~l~~~q~ 636 (643)
+|+|+|||+||++ ++|.|+.|++.|.
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 672 KDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred ccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 5999999999998 6999999998874
No 35
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-92 Score=709.49 Aligned_cols=492 Identities=34% Similarity=0.475 Sum_probs=454.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Q 006489 139 AWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFM-FATS 217 (643)
Q Consensus 139 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~ 217 (643)
..++...++...+.+--..|.|+.++++.|+.++.+|.+..-+......+.......+..++...+-+...++++ +.++
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 445667778888888999999999999999999999988888877777777777766777776666666555554 4589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 006489 218 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 297 (643)
Q Consensus 218 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 297 (643)
||.+++.++++.++.++............++..++.++......|++-+.+++|-|+.|+.+..+|.+..+.+.++..|.
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99999999999999888877777777888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006489 298 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 377 (643)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~ 377 (643)
....++++.....+.........+.+...+..|.+|+|+++....++.++..|++.++..+.++.+++...++++++++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCC-CCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE
Q 006489 378 VSSMPKSGNQCPLG-DQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 456 (643)
Q Consensus 378 ~~~~~~~~~~~~~~-~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I 456 (643)
+.+..+.....+.+ -..+.|.|+||+|.|++ ..|+|+++||++++|+++||||+||+||||++++|.|||++++|.|
T Consensus 243 ~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I 320 (497)
T COG5265 243 EAEVSDAPDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI 320 (497)
T ss_pred chhhccCCCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence 77765544444443 33467999999999985 4689999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 006489 457 LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 536 (643)
Q Consensus 457 ~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~ 536 (643)
.+||+|++++..+++|+.||.||||..||++|+..||.+|+| +++++|++.|++.+++++||+++|+||||.|||+|-.
T Consensus 321 ~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~-~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglk 399 (497)
T COG5265 321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP-DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399 (497)
T ss_pred EEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-cccHHHHHHHHHHhhhhHHHHhCchhhhcccchheee
Confidence 999999999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEc
Q 006489 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 616 (643)
Q Consensus 537 LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G 616 (643)
||||||||+||||+++++|+||+|||+|||||++||+.|+.+|+...+++|.++|+|||+|+-+||+|+||++|+|+|+|
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg 479 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERG 479 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhhcCChHHHHHH
Q 006489 617 THEELLSKGGVYTALVK 633 (643)
Q Consensus 617 ~~~eL~~~~g~y~~l~~ 633 (643)
+|+||++++|.|++||.
T Consensus 480 ~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 480 THEELLAAGGLYAEMWR 496 (497)
T ss_pred cHHHHHHcCChHHHHhc
Confidence 99999999999999995
No 36
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5e-90 Score=800.55 Aligned_cols=575 Identities=25% Similarity=0.363 Sum_probs=497.5
Q ss_pred CccchhHHHHHHHhhhhH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 006489 52 PAANVGFGRVLALAKPDA-GKLIIA-TVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVI 129 (643)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (643)
+.....|.-++.|++... +..... +++.++..++....-+++.+|.|.-....... .....+++++.++.+
T Consensus 797 ~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~-------~~~~~~~~vY~~l~~ 869 (1381)
T KOG0054|consen 797 ETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTT-------VSTSFYLGVYALLGV 869 (1381)
T ss_pred hcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC-------CCcchHHHHHHHHHH
Confidence 446678888999988833 332322 33444444555555566666665322111000 001123445555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 130 VGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIG 209 (643)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~ 209 (643)
+..++..++.+.+...+.+....++..+++++++.|++||+++++|+|+||+++|++.+++.+...+..++...+.++..
T Consensus 870 ~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~ 949 (1381)
T KOG0054|consen 870 ASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGI 949 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 67777778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHH
Q 006489 210 LGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDE 289 (643)
Q Consensus 210 ~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 289 (643)
++++.+..|+..++++.+.++++.+..++.+..|++.+-....++...+++.|+++|+.|||+|+.|++|.+++.+..+.
T Consensus 950 ~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~ 1029 (1381)
T KOG0054|consen 950 LVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDE 1029 (1381)
T ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 290 TLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASR 369 (643)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 369 (643)
..+..+-....+-++..-..++..+....+..+....- .+.+++|.+-..++|...+...++.+.....++....++++
T Consensus 1030 ~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~-~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVE 1108 (1381)
T KOG0054|consen 1030 NSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLP-SGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVE 1108 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 88887777666666666666666555444444333222 22277899999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCC---CCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHH
Q 006489 370 RVFQLLDRVSSMP---KSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIE 446 (643)
Q Consensus 370 ri~~~l~~~~~~~---~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~ 446 (643)
|+.+..+.|+|.+ +...+++.++.+|+|+|+|++.+|.++ .++||+||||+|+|||||||||++|||||||+++|.
T Consensus 1109 Rv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLF 1187 (1381)
T KOG0054|consen 1109 RVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALF 1187 (1381)
T ss_pred HHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHH
Confidence 9999999777622 122245667888999999999999876 678999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcc
Q 006489 447 RFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKY 526 (643)
Q Consensus 447 g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~ 526 (643)
|+.+|.+|+|.|||+||.++++.+||++++.+||||.||+||+|.||... .+++|+++|+|++.|+|.++|.++|.|+
T Consensus 1188 Rl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf--~e~sD~~IW~ALe~~~Lk~~v~~~p~~L 1265 (1381)
T KOG0054|consen 1188 RLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF--DEYSDDEIWEALERCQLKDVVSSLPGGL 1265 (1381)
T ss_pred HhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc--cccCHHHHHHHHHHhChHHHHhhCCcCC
Confidence 99999999999999999999999999999999999999999999999998 4699999999999999999999999999
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEE
Q 006489 527 QTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAV 606 (643)
Q Consensus 527 ~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iiv 606 (643)
|++|.|+|.|||-||||.+||||||+|+++||+|||||+++|++|+..|+++|++.+++||||.||||++|+.+||||+|
T Consensus 1266 d~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlV 1345 (1381)
T KOG0054|consen 1266 DSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLV 1345 (1381)
T ss_pred CceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCEEEEEcChhHHhhc-CChHHHHHHHHhc
Q 006489 607 VSDGEIVESGTHEELLSK-GGVYTALVKRQLQ 637 (643)
Q Consensus 607 l~~G~Ive~G~~~eL~~~-~g~y~~l~~~q~~ 637 (643)
||+|+|+|.|+|++|+++ ++.|++++++...
T Consensus 1346 ld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~~ 1377 (1381)
T KOG0054|consen 1346 LDAGRVVEFDSPAELLSDKDSLFSSLLKEAAL 1377 (1381)
T ss_pred eeCCeEeecCChHHHHhCCcchHHHHHHHHHH
Confidence 999999999999999975 7788777765443
No 37
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.9e-88 Score=825.28 Aligned_cols=547 Identities=20% Similarity=0.293 Sum_probs=463.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 61 VLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAW 140 (643)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (643)
++.+++.+++.+++.+++.++..++.++.|++++.+++.+..... . .. .+.+++++++..++..++.....+
T Consensus 292 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~-~------~~-~~~~~~~l~~~~~~~~~~~~~~~~ 363 (1622)
T PLN03130 292 LRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP-A------WI-GYIYAFSIFVGVVLGVLCEAQYFQ 363 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c------hH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888889999999999999999999999998864321 0 11 111222222222333333322333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006489 141 LFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKL 220 (643)
Q Consensus 141 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 220 (643)
...+++.++...++..+|+|+++++...+++.++|+++|++++|++++++++ ..++.+|..++++++++++++...++.
T Consensus 364 ~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~~lg~~ 442 (1622)
T PLN03130 364 NVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQQLGVA 442 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458889999999999999999999999999999999999999999999987 467888888888888888888766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 221 TLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKV 300 (643)
Q Consensus 221 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 300 (643)
++++++++++.+++..++.++.++.+++.++..+++.+.+.|.++|+++||+|+||+.+.+++++.++++.+...+....
T Consensus 443 ~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~ 522 (1622)
T PLN03130 443 SLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLL 522 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777777788889999999999999999999999999999999999999999999999999988877776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 006489 301 VGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSS 380 (643)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~ 380 (643)
..+...+..... ..+.++++|++.+.+|.+|+|.++++++++..+..|+..++..+..+.+++++++|+.++++.++.
T Consensus 523 ~~~~~~~~~~~~--~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~ 600 (1622)
T PLN03130 523 SAFNSFILNSIP--VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEER 600 (1622)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 555443322222 234566788999999999999999999999999999999999999999999999999999976543
Q ss_pred CCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCC-CEEEEC
Q 006489 381 MPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK-GKILLN 459 (643)
Q Consensus 381 ~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~-G~I~id 459 (643)
....... .....+.|+++|++|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++ |+|.+.
T Consensus 601 ~~~~~~~--~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~ 678 (1622)
T PLN03130 601 VLLPNPP--LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR 678 (1622)
T ss_pred ccccCCc--ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc
Confidence 2211111 1112346999999999986445689999999999999999999999999999999999999999 999865
Q ss_pred CEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCH
Q 006489 460 GVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 539 (643)
Q Consensus 460 g~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSG 539 (643)
| +|+||||+||||+|||||||+||.+ ++++++++|++.|++++|++.||+|++|.|||+|.+|||
T Consensus 679 ~-------------~Iayv~Q~p~LfngTIreNI~fg~~--~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSG 743 (1622)
T PLN03130 679 G-------------TVAYVPQVSWIFNATVRDNILFGSP--FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISG 743 (1622)
T ss_pred C-------------eEEEEcCccccCCCCHHHHHhCCCc--ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCH
Confidence 5 9999999999999999999999954 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHH-HHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcCh
Q 006489 540 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLV-QDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTH 618 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i-~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~ 618 (643)
||||||+||||+|++||||||||||||||+++++.+ .++++..+++||+|+||||+++++.||+|++|++|+|+|+|+|
T Consensus 744 GQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~ 823 (1622)
T PLN03130 744 GQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTY 823 (1622)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCH
Confidence 999999999999999999999999999999988766 5678877789999999999999999999999999999999999
Q ss_pred hHHhhcCChHHHHHHHH
Q 006489 619 EELLSKGGVYTALVKRQ 635 (643)
Q Consensus 619 ~eL~~~~g~y~~l~~~q 635 (643)
+||+++++.|+++++.+
T Consensus 824 ~eL~~~~~~~~~l~~~~ 840 (1622)
T PLN03130 824 EELSNNGPLFQKLMENA 840 (1622)
T ss_pred HHHHhcchhHHHHHHhc
Confidence 99999999999998764
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.7e-88 Score=826.61 Aligned_cols=549 Identities=21% Similarity=0.285 Sum_probs=462.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 61 VLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAW 140 (643)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (643)
++.+++.+++.++.++++.++..++.++.|++++.+++.+..... . . ..+.+++++++..++..++.....+
T Consensus 292 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~-~------~-~~~~~~~~l~~~~~~~~~~~~~~~~ 363 (1495)
T PLN03232 292 LRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP-A------W-VGYVYAFLIFFGVTFGVLCESQYFQ 363 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c------c-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788888888888999999999999999999998854321 1 0 1122333334444445555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006489 141 LFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKL 220 (643)
Q Consensus 141 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 220 (643)
...+++.++...++..+|+|+++++...+++.++|+++|++++|++++++++ ..++.++..++++++++++++...++.
T Consensus 364 ~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~ 442 (1495)
T PLN03232 364 NVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVA 442 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4468899999999999999999999999999999999999999999999986 567788888888887777766544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 221 TLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKV 300 (643)
Q Consensus 221 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 300 (643)
++++++++++++++..++.++.++.+++.++..+++.+.+.|.++|+++||+|+||+.+.+++++.++++.+...+....
T Consensus 443 ~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~ 522 (1495)
T PLN03232 443 SLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLL 522 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555566777889999999999999999999999999999999999999999999999999988888877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 006489 301 VGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSS 380 (643)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~ 380 (643)
.++...+.... ...+.++++|++.+.+|.+|+|.++++++++..+..|+..++..+..+.+++++++|+.++++.+++
T Consensus 523 ~~~~~~~~~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~ 600 (1495)
T PLN03232 523 SAFNSFILNSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEER 600 (1495)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 66554432222 2233456889999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECC
Q 006489 381 MPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 460 (643)
Q Consensus 381 ~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg 460 (643)
....... .....+.|+++|++|+|++++++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|.+.
T Consensus 601 ~~~~~~~--~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--- 675 (1495)
T PLN03232 601 ILAQNPP--LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--- 675 (1495)
T ss_pred cccccCC--cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---
Confidence 2211111 11123469999999999864456899999999999999999999999999999999999999998763
Q ss_pred EeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHH
Q 006489 461 VPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 540 (643)
Q Consensus 461 ~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 540 (643)
++|++|+||||+||||+|||||||+||+ +++++++++|++.|+++++++.||+||+|.|||+|.+||||
T Consensus 676 ---------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~--~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGG 744 (1495)
T PLN03232 676 ---------VIRGSVAYVPQVSWIFNATVRENILFGS--DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGG 744 (1495)
T ss_pred ---------EecCcEEEEcCccccccccHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHH
Confidence 3677999999999999999999999995 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHH-HHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChh
Q 006489 541 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQ-DAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHE 619 (643)
Q Consensus 541 QrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~-~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~ 619 (643)
|||||+||||+|++||||||||||||||+++++.+. ++++...++||+|+||||+++++.||+|++|++|+|+|+|+|+
T Consensus 745 QkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~ 824 (1495)
T PLN03232 745 QKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFA 824 (1495)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999988775 5577777899999999999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHh
Q 006489 620 ELLSKGGVYTALVKRQL 636 (643)
Q Consensus 620 eL~~~~g~y~~l~~~q~ 636 (643)
||+++++.|+++++.+.
T Consensus 825 eL~~~~~~~~~l~~~~~ 841 (1495)
T PLN03232 825 ELSKSGSLFKKLMENAG 841 (1495)
T ss_pred HHHhcchhHHHHHHhcc
Confidence 99999999999987654
No 39
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.5e-86 Score=811.19 Aligned_cols=503 Identities=17% Similarity=0.252 Sum_probs=433.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 129 IVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFI 208 (643)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~ 208 (643)
++..++.+++.++..+.+.+...+++.++++++++.|+.||++.++|+++||+++|++.+++.+...+..++..++.+++
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~ 1015 (1490)
T TIGR01271 936 DSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLG 1015 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHH
Q 006489 209 GLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVD 288 (643)
Q Consensus 209 ~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 288 (643)
.++++++++|++++++++++++++++..++.+..++..+......+++.+++.|+++|+.+||+|++|+.+.+++.+..+
T Consensus 1016 ~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~ 1095 (1490)
T TIGR01271 1016 AIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALN 1095 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999999877666666666666677777788888888899999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 289 ETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGAS 368 (643)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 368 (643)
...+..+.......+......++..+..+++.+++ +....++.|.+..+++++..+..++..+...+..+.....++
T Consensus 1096 ~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~---~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~ 1172 (1490)
T TIGR01271 1096 LHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIA---IGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSV 1172 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76555544444444443333333222222211111 111234566666667777888889999999999999999999
Q ss_pred HHHHHHhcccCCCCCCCC-----------------CCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEE
Q 006489 369 RRVFQLLDRVSSMPKSGN-----------------QCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALV 431 (643)
Q Consensus 369 ~ri~~~l~~~~~~~~~~~-----------------~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaiv 431 (643)
+|+.++++.+++...... +.+.++..+.|+|+||+|+|++. .+++|+|+||+|+|||+||||
T Consensus 1173 eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIv 1251 (1490)
T TIGR01271 1173 SRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLL 1251 (1490)
T ss_pred HHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEE
Confidence 999999987665432100 11123445789999999999864 568999999999999999999
Q ss_pred CCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHH
Q 006489 432 GPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAK 511 (643)
Q Consensus 432 G~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~ 511 (643)
|+||||||||+++|+|+|+ .+|+|+|||+|+++++.+++|++|+||||||+||+|||||||.++. +++|+++++||+
T Consensus 1252 GrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~--~~tdeei~~aL~ 1328 (1490)
T TIGR01271 1252 GRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE--QWSDEEIWKVAE 1328 (1490)
T ss_pred CCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc--CCCHHHHHHHHH
Confidence 9999999999999999997 7999999999999999999999999999999999999999998873 689999999999
Q ss_pred HcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEE
Q 006489 512 MANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVI 591 (643)
Q Consensus 512 ~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~V 591 (643)
.|+++++|.++|+|+||+|||+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++.+++||+|+|
T Consensus 1329 ~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~I 1408 (1490)
T TIGR01271 1329 EVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILS 1408 (1490)
T ss_pred HCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHhcC
Q 006489 592 AHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 638 (643)
Q Consensus 592 tHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~q~~~ 638 (643)
|||++++.+||+|+||++|+|+|.|+|++|+++++.|++|++++.+.
T Consensus 1409 aHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1409 EHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRL 1455 (1490)
T ss_pred ecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhChh
Confidence 99999999999999999999999999999999899999999876543
No 40
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.6e-83 Score=719.81 Aligned_cols=533 Identities=18% Similarity=0.186 Sum_probs=451.2
Q ss_pred hHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 57 GFGRVLALAK-PDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCT 135 (643)
Q Consensus 57 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (643)
.+++++++++ ++++.++++++++++..+..++.|++++.++|...... ... +..++++.++..++.
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~---------~~~----~~~~~~~~~~~~~~~ 70 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG---------QGS----LFSFGGLCLLALLFR 70 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---------chH----HHHHHHHHHHHHHHH
Confidence 4678888999 99999999999999999999999999998887421100 000 111223344556778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 136 ALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFA 215 (643)
Q Consensus 136 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (643)
++..++..+.+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++.. +..++..++.++++++++++
T Consensus 71 ~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~ 149 (555)
T TIGR01194 71 IGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAY 149 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999998864 77788888888888999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchH--HHHHHHHHHHHHHHHH
Q 006489 216 TSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEK--NEISRYSEKVDETLKL 293 (643)
Q Consensus 216 ~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~~~~~~~~ 293 (643)
++|.+++++++++|+.+++..+..++.++...+.++..++..+.+.|.++|++++|+|+.++ ...+++++..++..+.
T Consensus 150 ~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 229 (555)
T TIGR01194 150 LSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADL 229 (555)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999998888888888878788888888899999999999999999999999999954 5677888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 294 GLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQ 373 (643)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~ 373 (643)
..+..+.......+..++..+...+.++++++. |.+|+|.++++..+...+..|+..+...+..++++..+++|+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ 306 (555)
T TIGR01194 230 HIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLAD 306 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766655554444444444444344444444432 78999999999999999999999999999999999999999999
Q ss_pred HhcccCCCC-C---CC-CCC---CCCCCCCcEEEEeEEEECCCCC--CCcceeceeEEeeCCCEEEEECCCCChHHHHHH
Q 006489 374 LLDRVSSMP-K---SG-NQC---PLGDQDGEVELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIAN 443 (643)
Q Consensus 374 ~l~~~~~~~-~---~~-~~~---~~~~~~~~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~ 443 (643)
+++.+++++ . +. ... +.....+.|+++||+|+|++.+ .+++|+|+||++++||++|||||||||||||++
T Consensus 307 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ 386 (555)
T TIGR01194 307 FGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAK 386 (555)
T ss_pred HHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHH
Confidence 986422111 0 10 000 1112235799999999998531 236999999999999999999999999999999
Q ss_pred HHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCC
Q 006489 444 LIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFP 523 (643)
Q Consensus 444 lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp 523 (643)
+|+|+|+|++|+|++||+|+++++.+++|++++||+||+++|++|+++|+ .+ +.++++++++++.++++++++.+|
T Consensus 387 ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~-~~~~~~~~~~~~~~~l~~~~~~lp 462 (555)
T TIGR01194 387 LFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GE-HASLDNAQQYLQRLEIADKVKIED 462 (555)
T ss_pred HHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---cc-chhHHHHHHHHHHcCCchhhcccc
Confidence 99999999999999999999999999999999999999999999999996 23 688999999999999999999999
Q ss_pred CcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHH-H-cCCCeEEEEccCchhHhhc
Q 006489 524 EKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDS-L-MKGRTVLVIAHRLSTVQSA 601 (643)
Q Consensus 524 ~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~-~-~~~~TvI~VtHrl~~i~~a 601 (643)
+||||. .+|||||||||+||||++++|||+|||||||+||+++|+.+.+.+.+ . .+++|+|+||||+++++.|
T Consensus 463 ~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~ 537 (555)
T TIGR01194 463 GGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELA 537 (555)
T ss_pred cccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhC
Confidence 999995 89999999999999999999999999999999999999999988743 3 3689999999999999999
Q ss_pred CeEEEEeCCEEEEE
Q 006489 602 DTVAVVSDGEIVES 615 (643)
Q Consensus 602 D~Iivl~~G~Ive~ 615 (643)
|+|++|++|+|+|.
T Consensus 538 d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 538 DQIIKLAAGCIVKD 551 (555)
T ss_pred CEEEEEECCEEEEe
Confidence 99999999999974
No 41
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.8e-84 Score=668.79 Aligned_cols=545 Identities=26% Similarity=0.346 Sum_probs=494.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 63 ALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLF 142 (643)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (643)
......++.++...+++.+..++.+..|.++-.+.|.+..+.. ...+..+.++.++++++..++.++|....
T Consensus 16 a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s--------~~TLv~Ltvlal~ly~~~glLd~iR~~~l 87 (580)
T COG4618 16 AVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRS--------VPTLVMLTVLALGLYAFQGLLDAIRSRVL 87 (580)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCC--------cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677778888888889999999999999999987643 22334556666777888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006489 143 SSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTL 222 (643)
Q Consensus 143 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 222 (643)
.+++.++..++...+|...++.+.... ..|+=.+-+ +|.++++.|++..-...+.+...+.+++.++|.++|++++
T Consensus 88 ~Rig~~lD~~L~~~v~~a~~~~~l~~~---~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~ 163 (580)
T COG4618 88 VRIGERLDRQLNGPVFAASFSAPLLRR---GSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGL 163 (580)
T ss_pred HHHHHHHHHHhccHHHHHHHhhHHhhc---CCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987766543 334334444 5899999999998888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 223 LALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVG 302 (643)
Q Consensus 223 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (643)
+.++...+++.+.++..+..++-.++..+...+.+.....+.+|.++|++.|+.....++|.+....++..+.+..-..+
T Consensus 164 ~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~ 243 (580)
T COG4618 164 IALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNG 243 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999988888888888888999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 006489 303 LFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMP 382 (643)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 382 (643)
.+..++..+-++....++.+|+|++++|++|.|.+++-..++.....|+......|.++..++.+.+|+.+++...++..
T Consensus 244 ~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~ 323 (580)
T COG4618 244 AFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA 323 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999998776543
Q ss_pred CCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEe
Q 006489 383 KSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVP 462 (643)
Q Consensus 383 ~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~ 462 (643)
. ..+.++.++.+.++++++.=|+. ++|+++|+||++++|+-+|||||||||||||+++|.|.++|.+|.|++||-|
T Consensus 324 ~---~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~ 399 (580)
T COG4618 324 E---RMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGAD 399 (580)
T ss_pred C---CCCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchh
Confidence 2 23445567889999999976655 6799999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 463 LVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 463 i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
++.++++++-++|||.|||..||+|||+|||+-+.+ +.|++++.+|++.|+.||.|..||+||||.|||+|..||||||
T Consensus 400 l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~-~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQR 478 (580)
T COG4618 400 LRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGE-EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQR 478 (580)
T ss_pred hhcCCHHHhccccCcCcccceecCCcHHHHHHhccc-cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHH
Confidence 999999999999999999999999999999976654 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL 621 (643)
|||+||||||.||.+++||||-|+||.+.|+.+.++|.+.+ +++|+|+||||++.+..+|+|+||++|++-..|+.+|.
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eV 558 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEV 558 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHH
Confidence 99999999999999999999999999999999999997764 69999999999999999999999999999999999998
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
+++
T Consensus 559 La~ 561 (580)
T COG4618 559 LAK 561 (580)
T ss_pred HHH
Confidence 764
No 42
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=6.6e-80 Score=755.07 Aligned_cols=550 Identities=18% Similarity=0.237 Sum_probs=471.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 60 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRA 139 (643)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (643)
.++.+++.+++.++..+++.++..++.++.|++++.+|+++..... + ....+.++++++++.++.+++.....
T Consensus 307 l~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~------~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (1522)
T TIGR00957 307 LFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMA-P------DWQGYFYTGLLFVCACLQTLILHQYF 379 (1522)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c------cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788999989999999999999999999999998754321 1 11123344555555666677776777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006489 140 WLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWK 219 (643)
Q Consensus 140 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (643)
+...+++.++...++..+|+|+++++...+++.++|+++|++++|++++.+.. ..++.+|..++++++++++++...++
T Consensus 380 ~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~ 458 (1522)
T TIGR00957 380 HICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGP 458 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 77889999999999999999999999999999999999999999999998865 56888888898988888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 220 LTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAK 299 (643)
Q Consensus 220 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 299 (643)
.++++++++++++++..++.++.++.+++.++..+++.+.+.|.++||++||+++||+.+.+++++.++++.+...+...
T Consensus 459 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~ 538 (1522)
T TIGR00957 459 SVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAY 538 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888899999999999999999999999999999999999999999999999999999998887766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006489 300 VVGLFFGGLNAASTLSVIVVVIYGANLTIT--GSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 377 (643)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~--g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~ 377 (643)
...+...... .....+.++.++.+.+.. +.++++.++++++++..+..|+..++..+..+.++.++++|+.++++.
T Consensus 539 ~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~ 616 (1522)
T TIGR00957 539 LHAVGTFTWV--CTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSH 616 (1522)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5544333211 112223333455666663 578999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCC-CCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE
Q 006489 378 VSSMPKSGNQCPLG-DQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 456 (643)
Q Consensus 378 ~~~~~~~~~~~~~~-~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I 456 (643)
+++.+......... ...+.|+++|++|+|++. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i 695 (1522)
T TIGR00957 617 EELEPDSIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695 (1522)
T ss_pred cccccccccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEE
Confidence 65432211111111 112369999999999753 4579999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 006489 457 LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 536 (643)
Q Consensus 457 ~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~ 536 (643)
.+|| +|+||||+||+|++||||||.+|. ++++++++++++.|++.++++.+|+|++|.+||+|.+
T Consensus 696 ~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~ 760 (1522)
T TIGR00957 696 HMKG-------------SVAYVPQQAWIQNDSLRENILFGK--ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVN 760 (1522)
T ss_pred EECC-------------EEEEEcCCccccCCcHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCC
Confidence 9998 799999999999999999999995 4788899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHH---HHcCCCeEEEEccCchhHhhcCeEEEEeCCEEE
Q 006489 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMD---SLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIV 613 (643)
Q Consensus 537 LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~---~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Iv 613 (643)
|||||||||+||||+|++|+|+||||||||||+++++.+.+.+. ++.+++|+|+|||+++.++.||+|++|++|+|+
T Consensus 761 LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~ 840 (1522)
T TIGR00957 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKIS 840 (1522)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEE
Confidence 99999999999999999999999999999999999999999885 346789999999999999999999999999999
Q ss_pred EEcChhHHhhcCChHHHHHHHH
Q 006489 614 ESGTHEELLSKGGVYTALVKRQ 635 (643)
Q Consensus 614 e~G~~~eL~~~~g~y~~l~~~q 635 (643)
++|+|+|++++++.|++++..+
T Consensus 841 ~~g~~~~l~~~~~~~~~l~~~~ 862 (1522)
T TIGR00957 841 EMGSYQELLQRDGAFAEFLRTY 862 (1522)
T ss_pred eeCCHHHHHhcchhHHHHHHhh
Confidence 9999999999999999988754
No 43
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=5.8e-78 Score=676.36 Aligned_cols=530 Identities=18% Similarity=0.186 Sum_probs=424.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 61 VLALAKPDAGKLIIATVALLIASVSSILI-PKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRA 139 (643)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (643)
++.+++++++.+++.++++++..++.++. |++.+.++|.+.... ..+..++++ .++..++.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~~----------~~~~~~~~~----~~~~~~~~~~~~ 69 (547)
T PRK10522 4 LRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTSL----------LVLPEFLGL----LLLLMAVTLGSQ 69 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc----------hHHHHHHHH----HHHHHHHHHHHH
Confidence 56778888898988899899988888874 677788888653210 011111111 112234566788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006489 140 WLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWK 219 (643)
Q Consensus 140 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (643)
++..+++.++..++|.++|++++++|+.+|+++++|++++|+++|++.+..++. .+..++.+++.++++++++++++|+
T Consensus 70 ~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~ 148 (547)
T PRK10522 70 LALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPK 148 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 888899999999999999999999999999999999999999999999998765 4677888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCch---HHHHHHHHHHHHHHHHHHHH
Q 006489 220 LTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQE---KNEISRYSEKVDETLKLGLQ 296 (643)
Q Consensus 220 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e---~~~~~~~~~~~~~~~~~~~~ 296 (643)
+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++++ ++.+ +.+.+++++..++..+...+
T Consensus 149 l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (547)
T PRK10522 149 MLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIR 227 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHH
Confidence 9999999999998888888899999999999999999999999999999996 4433 45678888877777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006489 297 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLD 376 (643)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~ 376 (643)
..+..........++..+...+.++++... +..+.+.+.++..+...+..|+..+...+..++.+..+.+|+.++++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~ 304 (547)
T PRK10522 228 ADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLAL 304 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555444433332222222222222333221 12234444444444445678999999999999999999999999976
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE
Q 006489 377 RVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 456 (643)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I 456 (643)
.+++..... ..+. +..+.|+++||+|+|+++ +++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|
T Consensus 305 ~~~~~~~~~-~~~~-~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i 380 (547)
T PRK10522 305 APYKAEFPR-PQAF-PDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 (547)
T ss_pred ccccccccc-cccc-CcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 543321111 1111 112469999999999843 479999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 006489 457 LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 536 (643)
Q Consensus 457 ~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~ 536 (643)
++||+|+++++.+++|++|+||||||++|++|++|| + + +.++++++++++.+++++++.. |+|. .+|.+
T Consensus 381 ~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~-~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~ 449 (547)
T PRK10522 381 LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-K-PANPALVEKWLERLKMAHKLEL-EDGR-----ISNLK 449 (547)
T ss_pred EECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-C-chHHHHHHHHHHHcCCchhhhc-cccC-----CCCCC
Confidence 999999999999999999999999999999999999 3 2 6788889999998888877653 5443 25899
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhhcCeEEEEeCCEEEE
Q 006489 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 614 (643)
Q Consensus 537 LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive 614 (643)
|||||||||+||||++++|+|+|||||||+||+++|+.+.+++.+.. +++|+|+||||+++++.||+|++|++|+++|
T Consensus 450 LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529 (547)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999997654 4899999999999999999999999999998
Q ss_pred E-cChhHHhhc
Q 006489 615 S-GTHEELLSK 624 (643)
Q Consensus 615 ~-G~~~eL~~~ 624 (643)
. |++.+-..+
T Consensus 530 ~~~~~~~~~~~ 540 (547)
T PRK10522 530 LTGEERDAASR 540 (547)
T ss_pred ecCCchhhhhh
Confidence 7 666664443
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.7e-77 Score=729.88 Aligned_cols=543 Identities=20% Similarity=0.263 Sum_probs=469.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 61 VLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAW 140 (643)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (643)
++.+++.+++.+++.+++.++..++.++.|++++.+|+++..... . . ....+.++++++++.++..++.....|
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~-~-~----~~~~~~l~~~~~~~~~~~~l~~~~~~~ 144 (1490)
T TIGR01271 71 LNALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNA-P-E----REIAYYLALGLCLLFIVRTLLLHPAIF 144 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-C-c----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788888888888899999999999999999998742211 1 0 111234555666667777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006489 141 LFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKL 220 (643)
Q Consensus 141 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 220 (643)
...+.+.++...+...+|+|+++++...+++.++|+++|++++|++++.+.+.. ++.+|..++++++++++++...++.
T Consensus 145 ~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~~~~~~pi~i~~~~~lL~~~~G~~ 223 (1490)
T TIGR01271 145 GLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLAL-AHFVWIAPLQVILLMGLIWELLEVN 223 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999998664 5778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 221 TLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKV 300 (643)
Q Consensus 221 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 300 (643)
++++++++++++++..++.++..+.+++.+...+++.+.++|.++||++||+|+||+.+.+++++.++++.+...+....
T Consensus 224 ~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~ 303 (1490)
T TIGR01271 224 GFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYL 303 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 006489 301 VGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSV-SGLSSLYTVAMKAAGASRRVFQLLDRVS 379 (643)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 379 (643)
..+...+..+ ....+.++.++.|.+..+ ++++.++++++++..+..|+ ..++..+..+.++.++++||.++++.++
T Consensus 304 ~~~~~~~~~~--~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e 380 (1490)
T TIGR01271 304 RYFYSSAFFF--SGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEE 380 (1490)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 5444433322 223344556667766654 68999999999999998887 4799999999999999999999998754
Q ss_pred CCCCCCCCCCCCCCCCcEEEEeEEEECCCCC-------------------------------CCcceeceeEEeeCCCEE
Q 006489 380 SMPKSGNQCPLGDQDGEVELDDVWFAYPSRP-------------------------------NHMVLKGITLKLLSGSKI 428 (643)
Q Consensus 380 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~-------------------------------~~~vL~~isl~i~~G~~v 428 (643)
....... .....|+++|++|.|+... .+++|+|+||+|++|+++
T Consensus 381 ~~~~~~~-----~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~ 455 (1490)
T TIGR01271 381 YKTLEYN-----LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLL 455 (1490)
T ss_pred ccccccc-----CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEE
Confidence 3221110 1123599999999996310 136899999999999999
Q ss_pred EEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHH
Q 006489 429 ALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIEN 508 (643)
Q Consensus 429 aivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~ 508 (643)
+|+||+|||||||+++|+|+++|++|+|.++| +|+||+|+||+|++||+|||+||. .++++++.+
T Consensus 456 ~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~ 520 (1490)
T TIGR01271 456 AVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGL--SYDEYRYTS 520 (1490)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhcc--ccchHHHHH
Confidence 99999999999999999999999999999999 799999999999999999999994 477788999
Q ss_pred HHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHH-HHHHHcCCCe
Q 006489 509 AAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQD-AMDSLMKGRT 587 (643)
Q Consensus 509 al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~-~i~~~~~~~T 587 (643)
+++.|+++++++.+|+|++|.|||+|.+|||||||||+||||+|++|+||||||||||||+++++.+.+ ++.++.+++|
T Consensus 521 ~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~t 600 (1490)
T TIGR01271 521 VIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKT 600 (1490)
T ss_pred HHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 5777778999
Q ss_pred EEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHH
Q 006489 588 VLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVK 633 (643)
Q Consensus 588 vI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~ 633 (643)
+|+|||+++.++.||+|++|++|+|++.|+|+++.+.++.|.+.+.
T Consensus 601 vilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~ 646 (1490)
T TIGR01271 601 RILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLL 646 (1490)
T ss_pred EEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcChHHHHHHh
Confidence 9999999999999999999999999999999999987777877663
No 45
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.8e-75 Score=710.27 Aligned_cols=554 Identities=19% Similarity=0.247 Sum_probs=475.3
Q ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 55 NVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVC 134 (643)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (643)
+..+..++.+++.+++.+++.+++.++..++.++.|++++.+++++..... .+...+.++++++++.++..++
T Consensus 229 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~-------~~~~g~~l~~~l~~~~~~~~~~ 301 (1560)
T PTZ00243 229 PKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNA-------TWGRGLGLVLTLFLTQLIQSVC 301 (1560)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------chhHHHHHHHHHHHHHHHHHHH
Confidence 345566778888899999999999999999999999999999998743211 1222334555666677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 135 TALRAWLFSSASERVVARLRKNLFSHLINQEIAFYD--VTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGF 212 (643)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 212 (643)
...+.+...+.+.++...+...+|+|+++++...+. +.++|+++|++++|++++.+++. .++.+|..++++++++++
T Consensus 302 ~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~-~~~~l~~~Pl~li~~~~l 380 (1560)
T PTZ00243 302 LHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQ-YCMYLWSSPMVLLLSILL 380 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999998776 45889999999999999999974 578899999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHH
Q 006489 213 MFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLK 292 (643)
Q Consensus 213 l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 292 (643)
++.+.++.++++++++++.+++..++.++..+.+++.++..+++.+.++|.++||++||.++||+.+.+++++.++++.+
T Consensus 381 L~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~ 460 (1560)
T PTZ00243 381 LSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELR 460 (1560)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 293 LGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVF 372 (643)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~ 372 (643)
...+......+...+......+. .++.++.|.+..+.+|++.++++++++..+..|+..++..+..+.++.++++||.
T Consensus 461 ~l~~~~~~~~~~~~~~~~~p~l~--~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~ 538 (1560)
T PTZ00243 461 YLRDVQLARVATSFVNNATPTLM--IAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRIS 538 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777766655544433333 3335667888899999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCC------C------------C------C-------C--CC-------------------------CCCCC
Q 006489 373 QLLDRVSSMPK------S------------G------N-------Q--CP-------------------------LGDQD 394 (643)
Q Consensus 373 ~~l~~~~~~~~------~------------~------~-------~--~~-------------------------~~~~~ 394 (643)
++++.++.... . . + + .+ .....
T Consensus 539 ~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1560)
T PTZ00243 539 TFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPS 618 (1560)
T ss_pred HHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccc
Confidence 99976541100 0 0 0 0 00 00011
Q ss_pred CcEEEEeEEEECCCC-------------------------------------CCCcceeceeEEeeCCCEEEEECCCCCh
Q 006489 395 GEVELDDVWFAYPSR-------------------------------------PNHMVLKGITLKLLSGSKIALVGPSGGG 437 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~-------------------------------------~~~~vL~~isl~i~~G~~vaivG~sGsG 437 (643)
+.+.++|++|+|+.. .++++|+|+||+|++|++++|+|+||||
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsG 698 (1560)
T PTZ00243 619 PSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSG 698 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCc
Confidence 357788888875420 1245899999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchH
Q 006489 438 KSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHD 517 (643)
Q Consensus 438 KSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~ 517 (643)
||||+++|+|+++|++|+|.+++ +|+||||+||+|++||+|||.++. +.+++++.++++.|++++
T Consensus 699 KSTLL~~i~G~~~~~~G~i~~~~-------------~i~yv~Q~~~l~~~Tv~enI~~~~--~~~~~~~~~~~~~~~l~~ 763 (1560)
T PTZ00243 699 KSTLLQSLLSQFEISEGRVWAER-------------SIAYVPQQAWIMNATVRGNILFFD--EEDAARLADAVRVSQLEA 763 (1560)
T ss_pred HHHHHHHHhcCCCCCCcEEEECC-------------eEEEEeCCCccCCCcHHHHHHcCC--hhhHHHHHHHHHHhhhHH
Confidence 99999999999999999998754 899999999999999999999984 367778999999999999
Q ss_pred HHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHH-HHHHHcCCCeEEEEccCch
Q 006489 518 FISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQD-AMDSLMKGRTVLVIAHRLS 596 (643)
Q Consensus 518 ~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~-~i~~~~~~~TvI~VtHrl~ 596 (643)
+++.+|+|++|.+|++|.+|||||||||+||||++++|+|||||||||+||+++++.+.+ ++....+++|+|+|||+++
T Consensus 764 ~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~ 843 (1560)
T PTZ00243 764 DLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVH 843 (1560)
T ss_pred HHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH
Confidence 999999999999999999999999999999999999999999999999999997766654 5555667999999999999
Q ss_pred hHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHHH
Q 006489 597 TVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKR 634 (643)
Q Consensus 597 ~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~ 634 (643)
.++.||+|++|++|+|+++|+|+|+++. +.|.++...
T Consensus 844 ~~~~ad~ii~l~~G~i~~~G~~~~l~~~-~~~~~~~~~ 880 (1560)
T PTZ00243 844 VVPRADYVVALGDGRVEFSGSSADFMRT-SLYATLAAE 880 (1560)
T ss_pred HHHhCCEEEEEECCEEEEecCHHHHHhC-hHHHHHHHh
Confidence 9999999999999999999999999864 467777654
No 46
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.7e-72 Score=640.83 Aligned_cols=530 Identities=17% Similarity=0.161 Sum_probs=447.5
Q ss_pred hHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 006489 57 GFGRVLALAKPDAG-----KLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVG 131 (643)
Q Consensus 57 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (643)
.+.+++++++++++ .+++.+++.++.+++.+..|++.+.++|.+..... ......+..+++.++++.++.
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~-----~~f~~~l~~~~l~~~~~~~~~ 152 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSP-----RNFAWILFKWFLIAPPASFIN 152 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888876 56677888888899999999999999998874321 001111233444455566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 132 SVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLG 211 (643)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~ 211 (643)
.+..++..++......++..+++..+|++....+..+|++ ++|++.+|+++|++.+.+.+...+..++..++.++++++
T Consensus 153 ~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~ 231 (659)
T TIGR00954 153 SAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSF 231 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888888899999999999988889899987 789999999999999999999999999999988888888
Q ss_pred HHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHH
Q 006489 212 FMFA-TSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDET 290 (643)
Q Consensus 212 ~l~~-~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 290 (643)
.++. .+|.+++++++.+|+.+++.+++.++..+...+.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++.
T Consensus 232 ~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l 311 (659)
T TIGR00954 232 KLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRL 311 (659)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 8886 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-c----CCCCHHHHHH-HHHH---HHHHHHHHHHHHHHHH
Q 006489 291 LKLGLQQAKVVGLFFGGLNAASTL--SVIVVVIYGANLTI-T----GSMTPGALTS-FILY---SLTVGSSVSGLSSLYT 359 (643)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~v~-~----g~lt~g~l~~-~~~~---~~~~~~~l~~l~~~~~ 359 (643)
.+...+..++.+.+..+..++... ..+.+++.|...+. . |.+|+|.+++ ++.+ +..+..|+..+...+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~ 391 (659)
T TIGR00954 312 VEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGR 391 (659)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888887777643 23333333443332 2 7899998766 4444 5677999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCC--------CC--CC-------------CCCCCCCCcEEEEeEEEECCCCCCCccee
Q 006489 360 VAMKAAGASRRVFQLLDRVSSMPK--------SG--NQ-------------CPLGDQDGEVELDDVWFAYPSRPNHMVLK 416 (643)
Q Consensus 360 ~~~~~~~~~~ri~~~l~~~~~~~~--------~~--~~-------------~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~ 416 (643)
.++++.++.+|+.++++.+++... .. .. .......+.|+++||+|+|+++ +++|+
T Consensus 392 ~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~ 469 (659)
T TIGR00954 392 DMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIE 469 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeee
Confidence 999999999999999976432110 00 00 0001123469999999999743 46999
Q ss_pred ceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcC
Q 006489 417 GITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYG 496 (643)
Q Consensus 417 ~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~ 496 (643)
|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++|||.++
T Consensus 470 ~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~ 538 (659)
T TIGR00954 470 SLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYP 538 (659)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcC
Confidence 99999999999999999999999999999999999999999874 5689999999999999999999987
Q ss_pred CC------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHH
Q 006489 497 CD------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 570 (643)
Q Consensus 497 ~~------~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~ 570 (643)
.. .+.++++++++++.+++++++.. |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||++
T Consensus 539 ~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~ 616 (659)
T TIGR00954 539 DSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVD 616 (659)
T ss_pred CChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 41 14678899999999999999988 999999986 56799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeC
Q 006489 571 SEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 609 (643)
Q Consensus 571 te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~ 609 (643)
+++.+.+.+++. ++|+|+||||++.++.||+|++|+.
T Consensus 617 ~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 617 VEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999999874 8999999999999999999999973
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=8e-58 Score=465.75 Aligned_cols=237 Identities=22% Similarity=0.425 Sum_probs=224.1
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
+.|+|+|++|+|++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++ .+|+|++||.++..++...+|+.
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999753 4579999999999999999999999999999999999998 79999999999999999999999
Q ss_pred cEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC
Q 006489 475 ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 554 (643)
Q Consensus 475 i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~ 554 (643)
|+||||+|.+|++|++||+.+.. ..++++++++++.+++.+++..+|.|++|.++|+|.+||||||||++||||++++
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG--KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc--CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999997552 3678899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHHH
Q 006489 555 PRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKR 634 (643)
Q Consensus 555 p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~ 634 (643)
|+|+||||||++||+++++.+++.|++..+++|+|+||||+++++.||+|++|++|+|++.|++++|++.++.|++++.+
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 99999999999999999999999999887899999999999999999999999999999999999999988888888865
Q ss_pred H
Q 006489 635 Q 635 (643)
Q Consensus 635 q 635 (643)
.
T Consensus 237 ~ 237 (275)
T cd03289 237 S 237 (275)
T ss_pred c
Confidence 4
No 48
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-54 Score=452.51 Aligned_cols=225 Identities=31% Similarity=0.489 Sum_probs=200.0
Q ss_pred CCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEECCEeCC--
Q 006489 392 DQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLV-- 464 (643)
Q Consensus 392 ~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~-- 464 (643)
+..+.|+++|++|+|++. .+++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.
T Consensus 76 ~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 344679999999999753 4579999999999999999999999999999999999996 57999999999997
Q ss_pred CCCHHHHhcccEEEccCCCCCcccHHHHhhcCCC-CCCCHHH-----HHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 006489 465 EISHEHLHRKISIVSQEPVLFNCSIEENIAYGCD-GKASSAD-----IENAAKMANAHDFISNFPEKYQTFVGERGVRLS 538 (643)
Q Consensus 465 ~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~~~~~~-----i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LS 538 (643)
..+...+|++++||||+|++|++|++|||.|+.. ...++++ +.++++.+++.+ ++++.++++|.+||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------~l~~~~~~~~~~LS 227 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD-------EVKDDLDKAGNALS 227 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc-------hhhhhhhCCcccCC
Confidence 4556788999999999999999999999998631 1233333 466777777643 45688999999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcC
Q 006489 539 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGT 617 (643)
Q Consensus 539 GGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~ 617 (643)
||||||++||||++++|+|||||||||+||+++.+.+.++|+++.+++|+|+|||+++++.. ||+|+||++|+|+|.|+
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999999889999999999999987 99999999999999999
Q ss_pred hhHHhhc
Q 006489 618 HEELLSK 624 (643)
Q Consensus 618 ~~eL~~~ 624 (643)
++++...
T Consensus 308 ~~~l~~~ 314 (329)
T PRK14257 308 TKTIFIH 314 (329)
T ss_pred HHHHhcC
Confidence 9999764
No 49
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-53 Score=399.47 Aligned_cols=215 Identities=34% Similarity=0.541 Sum_probs=193.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCC-CCCHHHHhcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV-EISHEHLHRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~-~~~~~~lr~~ 474 (643)
-|+++|++.+|.+ ..+|+||||+|++||.++|+||||||||||++||.++-+|++|+|.+||.++. ..+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 3899999999974 46999999999999999999999999999999999999999999999998774 3478999999
Q ss_pred cEEEccCCCCC-cccHHHHhhcCCC--CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 475 ISIVSQEPVLF-NCSIEENIAYGCD--GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 475 i~~V~Q~~~Lf-~gTireNI~~~~~--~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
+|+|+|+.-|| +-|+.||++++.- ...+. ++-.+.++.++|.|--...| ..|||||+||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 99999999999 4899999998721 12232 33557788999999888888 5679999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHhhc
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||||.-+|+++++|||||||||+.-..|.+.+.++. .|.|.|+|||.+.+.++ ||||+.||+|+|+|+|+++++..+
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998875 58899999999999976 899999999999999999999875
No 50
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=6.3e-52 Score=416.95 Aligned_cols=235 Identities=49% Similarity=0.785 Sum_probs=219.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|+.. ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5799999999753 357999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 006489 477 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 556 (643)
Q Consensus 477 ~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~ 556 (643)
|++|++++|+.|++|||.++.+ ..+.+++.++++..++.++++.+|.|+++.......+||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEcCCchhccchHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999998754 455667888889899999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHH
Q 006489 557 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVK 633 (643)
Q Consensus 557 IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~ 633 (643)
++||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|++++++++.+.|..+++
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 235 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHHh
Confidence 99999999999999999999999988778999999999999999999999999999999999999998889988775
No 51
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-48 Score=391.88 Aligned_cols=523 Identities=20% Similarity=0.231 Sum_probs=384.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 61 VLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAW 140 (643)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (643)
+..+.|++++.++....+++++.+.....-.+ +-+......+.. + .+..+.++++++++ +.+.+.+.
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~~lLa~---in~al~e~~~~~------~-~~l~~f~~llllf~---~ss~is~l 70 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGIGLLAF---INQALIETADTS------L-LVLPEFLGLLLLFM---VSSLISQL 70 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhcccc------e-eeHHHHHHHHHHHH---HHHHHHHH
Confidence 44567888888887777777766655433222 222222111100 1 11122222222222 23334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006489 141 LFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKL 220 (643)
Q Consensus 141 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 220 (643)
.....++.+..++|.++.+|++..|+..+++-+++.++.++++|+.++. +-...++.+.++....+.+.+.+++.+|++
T Consensus 71 g~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~m 149 (546)
T COG4615 71 GLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKM 149 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5566789999999999999999999999999999999999999999997 555567778888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchH--HHHHHHHHHHHHHHHHHHHHH
Q 006489 221 TLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEK--NEISRYSEKVDETLKLGLQQA 298 (643)
Q Consensus 221 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~~~~~~~~~~~~~ 298 (643)
.+++++.+++......+...+..+......+..+++.+..+..++|-+.++.+.--. .+.+.+....+...+...+..
T Consensus 150 f~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~n 229 (546)
T COG4615 150 FLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRAN 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhhhh
Confidence 999999998888888888888888889999999999999999999999999886433 233333333333322111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 006489 299 KVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRV 378 (643)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~ 378 (643)
.......-..+++......+++|+.... +.-+.....++.+....+..|+.++...++.+.+++++.+++.++-..|
T Consensus 230 ~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~ 306 (546)
T COG4615 230 TFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAP 306 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCC
Confidence 1111111111222222222233332222 2222334444556667788999999999999999999999999886644
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEE
Q 006489 379 SSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILL 458 (643)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~i 458 (643)
+..... .+.+.++ -..||++||.|+|++. ..-+..||++|++||.|-|+|.+||||||++++|.|+|.|++|+|++
T Consensus 307 ~~a~~~-~~q~~p~-~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~l 382 (546)
T COG4615 307 YKADFP-RPQAFPD-WKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382 (546)
T ss_pred ccccCC-CCCcCCc-ccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeE
Confidence 322211 1111122 2369999999999864 25688999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 006489 459 NGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 538 (643)
Q Consensus 459 dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LS 538 (643)
||.|++.=+++++|+-++-|.-|-|||+.++ +.+..++++.+.+.++.-.+..-. ++.+|--+ -..||
T Consensus 383 dg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kt-sl~d~~fs-----~~kLS 450 (546)
T COG4615 383 DGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKT-SLNDGRFS-----NLKLS 450 (546)
T ss_pred CCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhh-cccCCccc-----ccccc
Confidence 9999999999999999999999999998653 333237777787777776655432 23333222 25799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhhcCeEEEEeCCEEEEEc
Q 006489 539 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 616 (643)
Q Consensus 539 GGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G 616 (643)
-|||.|+|+--|++.+.||++|||=-+-=||+=++.+.+.+.-.+ .|||++.|||+-.+...|||++.|++|+++|.-
T Consensus 451 tGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 451 TGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred cchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 999999999999999999999999999999999999999875443 499999999999999999999999999999863
No 52
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=4.8e-48 Score=417.72 Aligned_cols=497 Identities=19% Similarity=0.228 Sum_probs=396.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 006489 86 SILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQE 165 (643)
Q Consensus 86 ~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~ 165 (643)
.+......+.+.|.+... ....++..+..+...+.+...+...+.|+...+..+....+...+.++-++..
T Consensus 63 ~v~~~~w~~~~~~aL~~~---------d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~ 133 (604)
T COG4178 63 QVLLNDWNGPFYNALARR---------DLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR 133 (604)
T ss_pred eeeeHhhhhHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 334444455555554332 12334444455555555556666778999999999999999999999999888
Q ss_pred hhhhccCCh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------------HHHH
Q 006489 166 IAFYDVTRT-----GELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLT---------------LLAL 225 (643)
Q Consensus 166 ~~~~~~~~~-----G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~---------------l~~l 225 (643)
..++..... -+.=+|+..|+..+.+.-......++.++++++...++++-.+..++ .+++
T Consensus 134 ~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i 213 (604)
T COG4178 134 RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVI 213 (604)
T ss_pred chHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHH
Confidence 444443321 23448999999999998888888888888888888888885544332 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 226 VVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFF 305 (643)
Q Consensus 226 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (643)
+-+++-.++..+++|+..+++.+..+..+.....+.-.-++.+.|-.|+-|+.+.++.++......+...+...+...+.
T Consensus 214 ~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~ 293 (604)
T COG4178 214 IYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLT 293 (604)
T ss_pred HHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33333334455778888899988888888888889999999999999999999999988888888776666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC------
Q 006489 306 GGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVS------ 379 (643)
Q Consensus 306 ~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~------ 379 (643)
......+.++.++-+..++.....|.++.|.++.....+..+...++.+...+..+..-++.+.|+.++.+..+
T Consensus 294 ~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~ 373 (604)
T COG4178 294 WFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDT 373 (604)
T ss_pred HhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 66666666666677777888899999999999999999999999999999999999999999999998875332
Q ss_pred CCCCCCCCC-C-CCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEE
Q 006489 380 SMPKSGNQC-P-LGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL 457 (643)
Q Consensus 380 ~~~~~~~~~-~-~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~ 457 (643)
+.+...... . ....+..|+++|++..-|+. .+.++++||++++|+.+-|.|+||||||||+++|.|++|--+|+|.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~ 451 (604)
T COG4178 374 EKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRIS 451 (604)
T ss_pred cccCcccccccccccccceeEEeeeeEECCCC--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCcee
Confidence 111110000 0 00014579999999998865 3789999999999999999999999999999999999999999998
Q ss_pred ECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCC-CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 006489 458 LNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDG-KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 536 (643)
Q Consensus 458 idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~-~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~ 536 (643)
+... ..+-|+||.|++-.||+||-|+|-++. +++|+++.+++.+|+|.++++++.+-.+ -..-
T Consensus 452 ~P~~-----------~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~~v 515 (604)
T COG4178 452 MPAD-----------SALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-----WDRV 515 (604)
T ss_pred cCCC-----------CceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-----Hhhh
Confidence 7521 258999999999999999999997653 3899999999999999999999764332 5678
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeC
Q 006489 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 609 (643)
Q Consensus 537 LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~ 609 (643)
||+|||||||+||.++++|++++|||+|||||+++|..+.+.+++.+++.|+|.|+||.......++.+.+++
T Consensus 516 LS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 516 LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred cChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999998888877754
No 53
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4e-51 Score=415.53 Aligned_cols=240 Identities=33% Similarity=0.564 Sum_probs=222.5
Q ss_pred CCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHh
Q 006489 393 QDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLH 472 (643)
Q Consensus 393 ~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr 472 (643)
..+.|+++|++++|++. ..++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|++||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 45679999999999753 34699999999999999999999999999999999999999999999999999999988999
Q ss_pred cccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 473 RKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
+.|+|++|+|++|++|++||+.+.. ...+++++++++.+++.+++..+|.|++|.+++.+.+||||||||++||||++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999997652 34566788999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhc-CChHHHH
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTAL 631 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~-~g~y~~l 631 (643)
++|+++||||||++||+++++.+.+.++++.+++|+|++||+++.+..||+|++|++|+|++.|+++++.+. ++.|+++
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 999999999999999999999999999987778999999999999999999999999999999999999875 5678887
Q ss_pred HHHH
Q 006489 632 VKRQ 635 (643)
Q Consensus 632 ~~~q 635 (643)
+..+
T Consensus 253 ~~~~ 256 (257)
T cd03288 253 VRTD 256 (257)
T ss_pred Hhcc
Confidence 7654
No 54
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-52 Score=407.44 Aligned_cols=217 Identities=34% Similarity=0.556 Sum_probs=192.8
Q ss_pred EEEEeEEEECCCC--CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC---HHHH
Q 006489 397 VELDDVWFAYPSR--PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS---HEHL 471 (643)
Q Consensus 397 I~~~~vsf~Y~~~--~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~---~~~l 471 (643)
|++++||+.|+.. ....+|+||||+|++||..+|+|+||+|||||++|+-++-.|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999862 1356899999999999999999999999999999999999999999999999988877 5567
Q ss_pred hcccEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 472 HRKISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 472 r~~i~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
|++|++++|++-|++ .||.+|+.|--. ...+ .+++.+.|+.++|.|+-..-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 889999999999997 899999998521 1122 345778899999998887777 78899999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHh
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
+|||||..+|+||+.|||||||||+|.+.|.+.|++.- -+-|+++|||.++.+++ |||+.||++|+|+|+|+-.|+.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999987542 48899999999999975 9999999999999999999987
Q ss_pred hc
Q 006489 623 SK 624 (643)
Q Consensus 623 ~~ 624 (643)
.+
T Consensus 231 ~~ 232 (339)
T COG1135 231 AN 232 (339)
T ss_pred cC
Confidence 64
No 55
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-51 Score=393.48 Aligned_cols=214 Identities=33% Similarity=0.563 Sum_probs=194.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+|+|||++|.+ ..+++|+||+|++||+++++|||||||||++|+|-|+++|++|+|+|||.++++++...+|++||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 799999999974 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCC-cccHHHHhhcCCC-CCCC----HHHHHHHHHHcCch--HHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 477 IVSQEPVLF-NCSIEENIAYGCD-GKAS----SADIENAAKMANAH--DFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 477 ~V~Q~~~Lf-~gTireNI~~~~~-~~~~----~~~i~~al~~a~l~--~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
||-|..-|| +-||.|||.+-.. ...+ ++++.+.++.++|+ +|....| ..|||||+||+.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence 999999999 5899999987511 1223 44577889999996 4777877 56899999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchh-HhhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 549 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLST-VQSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 549 RAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~-i~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|||..+|+|+++|||+|||||.+++.+++-+.++- -++|+|+|||+.+. ++-+|||.+|++|+|++.+++++++++
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 99999999999999999999999999999986543 38999999999975 688999999999999999999999975
No 56
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-50 Score=404.63 Aligned_cols=235 Identities=53% Similarity=0.830 Sum_probs=219.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++. .++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5799999999642 46999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 006489 477 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 556 (643)
Q Consensus 477 ~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~ 556 (643)
|++|++++|+.|++||+.++.. ..+++++.++++.+++.+.+..+|.|+++.+.....+||||||||++|||||+++|+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EECCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998754 456777888999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHHH
Q 006489 557 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKR 634 (643)
Q Consensus 557 IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~ 634 (643)
++||||||++||+++...+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++.+..+.|..++.+
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~ 235 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKA 235 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHHhc
Confidence 999999999999999999999999887788999999999999999999999999999999999998877777776654
No 57
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-50 Score=404.57 Aligned_cols=233 Identities=57% Similarity=0.900 Sum_probs=217.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++. ..++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5799999999753 246999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 006489 477 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 556 (643)
Q Consensus 477 ~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~ 556 (643)
|++|++.+|+.|++||+.++.. ..+.+++.+.++.+++.++++.+|.|+++.++.....||||||||++|||||+++|+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EeCCCCeeccccHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998754 456677888899999999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHH
Q 006489 557 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTAL 631 (643)
Q Consensus 557 IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l 631 (643)
++||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+.+++.+..+.|+.+
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhhh
Confidence 999999999999999999999999887889999999999999999999999999999999999998877776653
No 58
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-51 Score=380.20 Aligned_cols=219 Identities=34% Similarity=0.548 Sum_probs=198.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCC-----CEEEECCEeCCC--CCH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK-----GKILLNGVPLVE--ISH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~-----G~I~idg~~i~~--~~~ 468 (643)
.++++|+++.|.+ +.+|+|||++|++++.+|++|||||||||+++++-|+.+..+ |+|.++|+||.+ ++.
T Consensus 7 ~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 5899999999974 469999999999999999999999999999999999998876 999999999975 579
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCC-C----CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-G----KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~----~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
..+|++||+|+|.|--|+.||+||+.||.. . +.-|+.++++++.|+|.|.+.. .+.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence 999999999999999999999999999832 0 1124568899999999887754 245668889999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHh
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
|+||||||.-+|+||+||||||||||.+..+|.+.|.++.++-|+|+|||.++.. +-+|+...+-.|++||.|+-+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 9999999999999999999999999999999999999999999999999999976 568999999999999999999987
Q ss_pred hc
Q 006489 623 SK 624 (643)
Q Consensus 623 ~~ 624 (643)
.+
T Consensus 237 ~~ 238 (253)
T COG1117 237 TN 238 (253)
T ss_pred cC
Confidence 54
No 59
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-50 Score=401.29 Aligned_cols=227 Identities=48% Similarity=0.825 Sum_probs=212.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++ .+++++|+||++++||+++|+||||||||||+++|+|+++|.+|+|.++|.++.+.+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 5899999999974 23699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCC
Q 006489 476 SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 555 (643)
Q Consensus 476 ~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p 555 (643)
+|++|++.+|++|++||+.++.+ ...++++.++++.+++.++++.+|.|+++.++.....||||||||++|||||+++|
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998754 45667888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcC
Q 006489 556 RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG 625 (643)
Q Consensus 556 ~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~ 625 (643)
+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.++.||+|++|++|++++.|+.+++.++.
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhhC
Confidence 9999999999999999999999999887789999999999999999999999999999999998887653
No 60
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.2e-50 Score=398.19 Aligned_cols=220 Identities=35% Similarity=0.570 Sum_probs=207.9
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
+.|+++|++++|+.. +.++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999753 3579999999999999999999999999999999999999999999999999999898889999
Q ss_pred cEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC
Q 006489 475 ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 554 (643)
Q Consensus 475 i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~ 554 (643)
++|++|++.+|++|++|||.+.. ..+.+++.++++..++.+++..+|.|++|.+++...+||||||||++||||++++
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998774 3567889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcC
Q 006489 555 PRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 617 (643)
Q Consensus 555 p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~ 617 (643)
|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999999999999998877899999999999999999999999999998876
No 61
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=9.4e-50 Score=401.40 Aligned_cols=235 Identities=59% Similarity=0.950 Sum_probs=216.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++....++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 57899999997532357999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 006489 477 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 556 (643)
Q Consensus 477 ~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~ 556 (643)
|++|++.+|+.|++||+.++.. ....+++.+.++..++.+++..+|.|+++.+.....+||||||||++||||++.+|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EECCchhhhhhhHHHHhhccCC-CCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998754 445667788888899999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHH
Q 006489 557 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALV 632 (643)
Q Consensus 557 IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~ 632 (643)
++||||||++||+++.+.+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|+.+++.+....++.++
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 235 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHh
Confidence 9999999999999999999999988777899999999999999999999999999999999999887766666554
No 62
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=8.7e-49 Score=389.66 Aligned_cols=219 Identities=37% Similarity=0.662 Sum_probs=203.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++. ..++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999753 34699999999999999999999999999999999999999999999999999888877888999
Q ss_pred EEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCC
Q 006489 476 SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 555 (643)
Q Consensus 476 ~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p 555 (643)
+|++|++.+|..|++||+.++.. ..+++++.++++..++.+.+..+|.|++|.+.+....||||||||++||||++.+|
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999988743 34566788999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEc
Q 006489 556 RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 616 (643)
Q Consensus 556 ~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G 616 (643)
+++||||||++||+++...+.+.|+++.+++|+|+|||+++.++.||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999887678999999999999999999999999998764
No 63
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.2e-49 Score=390.23 Aligned_cols=215 Identities=33% Similarity=0.526 Sum_probs=194.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.++++|++|+|++ +++|+|+||+|++||.++|+||||||||||+|+|.|+.+|.+|+|++||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3799999999974 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCC-CCcccHHHHhhcCCCC---------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 476 SIVSQEPV-LFNCSIEENIAYGCDG---------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 476 ~~V~Q~~~-Lf~gTireNI~~~~~~---------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
|||||++. -|.-||+|=+.+|+-+ +.|++.+.+|++.+++.++-+.. =..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHH
Confidence 99999964 5788999999999631 11334588899999999875442 246899999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchh-HhhcCeEEEEeCCEEEEEcChhHHh
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLST-VQSADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~-i~~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
.|||||.++|+|++||||||+||......+.+.++++. +++|+|+|.|+++. ++.||++++|++|+|+.+|+++|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999876 36999999999976 5889999999999999999999887
Q ss_pred hc
Q 006489 623 SK 624 (643)
Q Consensus 623 ~~ 624 (643)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 54
No 64
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=9.5e-49 Score=409.81 Aligned_cols=217 Identities=32% Similarity=0.538 Sum_probs=191.3
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---Hh
Q 006489 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH---LH 472 (643)
Q Consensus 397 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---lr 472 (643)
|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996421 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cccEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHH
Q 006489 473 RKISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 546 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRia 546 (643)
++|+||+|++.+|. .|++||+.++.. ...+ ++++.++++.+++.+.....| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999995 799999987521 0122 345678888888887665554 579999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHhh
Q 006489 547 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 547 lARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
|||||+.+|+|||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.++. ||+|++|++|+|++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999988754 7899999999999855 99999999999999999999976
Q ss_pred c
Q 006489 624 K 624 (643)
Q Consensus 624 ~ 624 (643)
.
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 4
No 65
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-48 Score=391.70 Aligned_cols=219 Identities=35% Similarity=0.558 Sum_probs=189.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH---HHHhc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH---EHLHR 473 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~---~~lr~ 473 (643)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999964 369999999999999999999999999999999999999999999999999988764 56789
Q ss_pred ccEEEccCCCCCcc-cHHHHhhcCCC--CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHH
Q 006489 474 KISIVSQEPVLFNC-SIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 546 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~g-TireNI~~~~~--~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRia 546 (643)
.|+||+|++.+|+. |++||+.++.. ...+ ++++.++++.+++.++....| ..||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP-----------AELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHH
Confidence 99999999999985 99999987521 0123 234666777777766544333 579999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHhh
Q 006489 547 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 547 lARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
|||||+++|+|+||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999988753 7899999999998864 99999999999999999999876
Q ss_pred cCChHH
Q 006489 624 KGGVYT 629 (643)
Q Consensus 624 ~~g~y~ 629 (643)
....|.
T Consensus 227 ~~~~~~ 232 (235)
T cd03261 227 SDDPLV 232 (235)
T ss_pred CCChhh
Confidence 555443
No 66
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-48 Score=401.94 Aligned_cols=222 Identities=27% Similarity=0.464 Sum_probs=185.9
Q ss_pred cEEEEeEEEECCCCC--CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCC-------
Q 006489 396 EVELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI------- 466 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~------- 466 (643)
.|+++|++|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997431 24699999999999999999999999999999999999999999999999998653
Q ss_pred ---------CHHHHhcccEEEccCC--CCCcccHHHHhhcCCC-CCCCHHHHHHHHHHcCchHHHHcCCCccc-ccccCC
Q 006489 467 ---------SHEHLHRKISIVSQEP--VLFNCSIEENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQ-TFVGER 533 (643)
Q Consensus 467 ---------~~~~lr~~i~~V~Q~~--~Lf~gTireNI~~~~~-~~~~~~~i~~al~~a~l~~~i~~lp~G~~-T~vge~ 533 (643)
+...+|++|+||+|+| ++|+.|++|||.++.. ...++++..+.+ .+.++.+ |++ ......
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLA-----KFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHH-----HHHHHHc--CCChhHhcCC
Confidence 3567899999999998 7999999999988731 123333322111 1233333 332 335667
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhH-hhcCeEEEEeCCE
Q 006489 534 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGE 611 (643)
Q Consensus 534 G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i-~~aD~Iivl~~G~ 611 (643)
+.+||||||||++|||||+++|+|||||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 88999999999999999999999999999999999999999999998763 588999999999977 5799999999999
Q ss_pred EEEEcChhHHhhc
Q 006489 612 IVESGTHEELLSK 624 (643)
Q Consensus 612 Ive~G~~~eL~~~ 624 (643)
|++.|+++++.+.
T Consensus 254 i~~~g~~~~~~~~ 266 (320)
T PRK13631 254 ILKTGTPYEIFTD 266 (320)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999987543
No 67
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-48 Score=398.39 Aligned_cols=213 Identities=36% Similarity=0.592 Sum_probs=193.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++||+.+|.+. .+++|+||+|++||+++++||||||||||+++|+|+.+|++|+|+|||.++.+++++. +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999753 2899999999999999999999999999999999999999999999999999999877 699
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-----CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~-----~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
|+|+|+..||+ .||+|||.|+-. .+-.++++.++++..++.+.++..| ..||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 99999999996 699999999842 1123677999999999999999988 567999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||+++|++++||||+|+||++........|+++-+ +.|+|+|||+...+ .-||+|.||++|+|.+.|++.|+.++
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 99999999999999999999988888888876532 67999999999776 56999999999999999999999865
No 68
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.8e-48 Score=386.93 Aligned_cols=213 Identities=36% Similarity=0.568 Sum_probs=187.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCC-----CCCCCEEEECCEeCCCCC--HH
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY-----DPIKGKILLNGVPLVEIS--HE 469 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~-----~p~~G~I~idg~~i~~~~--~~ 469 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.++...+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 36999999999999999999999999999999999999 999999999999998776 56
Q ss_pred HHhcccEEEccCCCCCcccHHHHhhcCCC-CCC-----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 470 HLHRKISIVSQEPVLFNCSIEENIAYGCD-GKA-----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 470 ~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~~-----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
.+|++++|++|++.+|+.|++||+.++.. ... .++++.++++..++.+.+...++ ..+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 78889999999999999999999987531 011 13457788888888776555432 5689999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
|++|||||+++|+++||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999998865689999999999876 5999999999999999998764
No 69
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-48 Score=374.27 Aligned_cols=199 Identities=36% Similarity=0.545 Sum_probs=178.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.+++++|+.+|+. ..+|+|+||+|++||+|+|+||||||||||++++.|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4899999999975 4799999999999999999999999999999999999999999999999888544 3489
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCCCC-----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCDGK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~~~-----~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+||+|++.||+ -||+||+.++-... -.+++..++++.++|.+|-+..| ..||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 99999999998 89999999985311 12446889999999999999988 567999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchh-HhhcCeEEEEeC--CEEE
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLST-VQSADTVAVVSD--GEIV 613 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~-i~~aD~Iivl~~--G~Iv 613 (643)
||+.+|+||+||||+||||+.|....++-+.++.+ ++|+++|||+.+. +.-+|||+||.+ |+|.
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999999999999999987654 6999999999986 577999999999 5553
No 70
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.7e-48 Score=371.26 Aligned_cols=207 Identities=35% Similarity=0.532 Sum_probs=179.4
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---H-
Q 006489 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH---L- 471 (643)
Q Consensus 397 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---l- 471 (643)
++++||+..|.... ...+|+++||+|++||+|||+||||||||||+++|.|+..|++|+|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996531 246899999999999999999999999999999999999999999999999999998533 3
Q ss_pred hcccEEEccCCCCCc-ccHHHHhhc----CCCCC-CCHHHHHHHHHHcCchHHHH-cCCCcccccccCCCCCCCHHHHHH
Q 006489 472 HRKISIVSQEPVLFN-CSIEENIAY----GCDGK-ASSADIENAAKMANAHDFIS-NFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 472 r~~i~~V~Q~~~Lf~-gTireNI~~----~~~~~-~~~~~i~~al~~a~l~~~i~-~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
|++||||+|+..|++ -|++|||.+ ..... ...++..+.++..++.+... ..| ..||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 567999999999985 699999984 22101 12455777888888887665 555 6789999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhhcCeEEEEeCCEEEE
Q 006489 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 614 (643)
Q Consensus 545 ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive 614 (643)
+||||||+.+|+|++.||||+|||+++.+.|.+.+++.. .++|+|+|||+......|||++.|++|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999998874 3789999999999999999999999999543
No 71
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-48 Score=381.01 Aligned_cols=216 Identities=35% Similarity=0.644 Sum_probs=197.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCC-CCCHHHHhcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV-EISHEHLHRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~-~~~~~~lr~~ 474 (643)
.|+++|++|+|+++ .++|+|+||+|++|+.++|+|+||||||||+++|.|+++|++|+|.+||.+++ +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999865 58999999999999999999999999999999999999999999999999998 5889999999
Q ss_pred cEEEccCC--CCCcccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 475 ISIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 475 i~~V~Q~~--~Lf~gTireNI~~~~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
++||.|+| .+|..||.|.+.||.. ...+. +++.++++.+++.++.+..| .+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 99999999 8999999999999943 12333 45788999999999866666 6789999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHhhc
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|.+|..+|+++|||||||+||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||+++||++|+++.+|+++|+.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999998864 4799999999999977 999999999999999999888765
No 72
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1e-47 Score=383.53 Aligned_cols=218 Identities=55% Similarity=0.846 Sum_probs=199.8
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhc
Q 006489 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR 473 (643)
Q Consensus 394 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~ 473 (643)
.+.|+++|++++|++....++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 45799999999997532246999999999999999999999999999999999999999999999999998888888889
Q ss_pred ccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc
Q 006489 474 KISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 553 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~ 553 (643)
+++|++|++.+|+.|++||+.++.. ..+..++.+..+...+.++++.+|.|+++.+.+...+||||||||++||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998743 344555666677778899999999999999999999999999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEE
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEI 612 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~I 612 (643)
+|+++||||||++||+++...+.+.|+++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988778999999999999999999999999974
No 73
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-47 Score=393.82 Aligned_cols=218 Identities=32% Similarity=0.556 Sum_probs=194.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743224699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCCC--CCcccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 476 SIVSQEPV--LFNCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 476 ~~V~Q~~~--Lf~gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
+||+|+|. ++..||+|||.++.. ...+ ++++.++++.+++.++....| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999984 567899999998632 0123 345788899999987766655 58999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 549 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 549 RAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999988753 7999999999999989999999999999999999987654
No 74
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1e-47 Score=364.89 Aligned_cols=224 Identities=32% Similarity=0.566 Sum_probs=195.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH---HHh
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE---HLH 472 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~lr 472 (643)
-|++++|+|+|.+ ..+++||||+|++||.++|+|+||||||||++++.|+..|++|+|.++|.|+.+++.+ .+|
T Consensus 8 ~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5999999999974 4799999999999999999999999999999999999999999999999999999864 469
Q ss_pred cccEEEccCCCCCc-ccHHHHhhcCCC--CCCCHHHHH----HHHHHcCchHH-HHcCCCcccccccCCCCCCCHHHHHH
Q 006489 473 RKISIVSQEPVLFN-CSIEENIAYGCD--GKASSADIE----NAAKMANAHDF-ISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~-gTireNI~~~~~--~~~~~~~i~----~al~~a~l~~~-i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
+++|+++|+..||+ -||+||+.|--. .+.+++.++ .-++.++|... .+.+| ..||||.+.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 99999999999996 599999998421 134555544 45778888877 66666 6789999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHH
Q 006489 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 545 ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL 621 (643)
.|||||+.-||+|+++|||||+|||.+...+.+-|+++.+ +.|+|+|||+++++.. ||+|+++.+|+|+..|+++||
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999888876543 8899999999998765 799999999999999999999
Q ss_pred hhcCChH-HHHHH
Q 006489 622 LSKGGVY-TALVK 633 (643)
Q Consensus 622 ~~~~g~y-~~l~~ 633 (643)
.+.+..| ++.++
T Consensus 234 ~~sd~P~v~qf~~ 246 (263)
T COG1127 234 LASDDPWVRQFFN 246 (263)
T ss_pred HhCCCHHHHHHhc
Confidence 9875443 44443
No 75
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.3e-47 Score=374.58 Aligned_cols=204 Identities=36% Similarity=0.585 Sum_probs=185.0
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhc
Q 006489 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR 473 (643)
Q Consensus 394 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~ 473 (643)
.+.|+++|++++|++. ..++++|+||+|++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 3569999999999753 347999999999999999999999999999999999999999999999999999888888999
Q ss_pred ccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc
Q 006489 474 KISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 553 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~ 553 (643)
.|+||+|+|.+|++|++|||.+.+ ..+++++.++++ +.+....|||||+||++||||+++
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 999999999999999999998763 345555555544 345678999999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcCh
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTH 618 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~ 618 (643)
+|+++||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+..||++++|++|++++.|++
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999988778999999999999988999999999999998864
No 76
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-47 Score=386.47 Aligned_cols=219 Identities=29% Similarity=0.445 Sum_probs=194.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC---CCCCEEEECCEeCCCCCHHHHh
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD---PIKGKILLNGVPLVEISHEHLH 472 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~---p~~G~I~idg~~i~~~~~~~lr 472 (643)
.|+++|+++.|++ +++|+|+||++++||.++|+|+||||||||+++|+|+++ |++|+|.+||.++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999974 369999999999999999999999999999999999984 6899999999999988888889
Q ss_pred cccEEEccCCCCCcccHHHHhhcCCC-------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 473 RKISIVSQEPVLFNCSIEENIAYGCD-------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~gTireNI~~~~~-------~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
+.|+|+||++.+|+.|++||+.++.. .+..++++.++++.+++.+++..+ ..+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHH
Confidence 99999999999999999999987521 011234567888888887665432 3456789999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
+||||++++|+++||||||++||+++...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998877899999999999875 6999999999999999999998754
No 77
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1e-46 Score=385.55 Aligned_cols=240 Identities=28% Similarity=0.436 Sum_probs=208.0
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCC
Q 006489 370 RVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 370 ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
.+.+++..++++.+.. +.+.....|+++|+++.+ .++|+|+||+|++||+++|+|+||||||||+++|+|++
T Consensus 16 ~~~~~~~~~~~~~~~~---~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 16 GFGELLEKAKQENNDR---KHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred HHHHHHhccccccccc---ccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4666666655433222 122234569999999952 35999999999999999999999999999999999999
Q ss_pred CCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCccccc
Q 006489 450 DPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTF 529 (643)
Q Consensus 450 ~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ 529 (643)
+|++|+|.++| .|+|++|++++|+.|++||+.++. ...+.++.++++.+++.+.+..+|.+++|.
T Consensus 88 ~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 152 (282)
T cd03291 88 EPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLEEDITKFPEKDNTV 152 (282)
T ss_pred CCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhccc--ccCHHHHHHHHHHhCCHHHHHhccccccce
Confidence 99999999999 599999999999999999999873 244556778888899999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHH-HHHcCCCeEEEEccCchhHhhcCeEEEEe
Q 006489 530 VGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAM-DSLMKGRTVLVIAHRLSTVQSADTVAVVS 608 (643)
Q Consensus 530 vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i-~~~~~~~TvI~VtHrl~~i~~aD~Iivl~ 608 (643)
+++.+..||||||||++|||||+++|++|||||||++||+.+...+.+.+ +.+.+++|+|+|||+++.++.||+|++|+
T Consensus 153 ~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~ 232 (282)
T cd03291 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232 (282)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999888754 55556899999999999999999999999
Q ss_pred CCEEEEEcChhHHhhcCChHHHHH
Q 006489 609 DGEIVESGTHEELLSKGGVYTALV 632 (643)
Q Consensus 609 ~G~Ive~G~~~eL~~~~g~y~~l~ 632 (643)
+|++++.|+++++.+....|.+.+
T Consensus 233 ~G~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 233 EGSSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred CCEEEEECCHHHHHhcchHHHHHH
Confidence 999999999999987656665444
No 78
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-47 Score=365.59 Aligned_cols=226 Identities=35% Similarity=0.524 Sum_probs=190.3
Q ss_pred cEEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC-HHHHhc
Q 006489 396 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS-HEHLHR 473 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~-~~~lr~ 473 (643)
.++++|+++.|+.+. -.++++||||+|.+||+++|||+||||||||+++|+|+.+|++|+|++||.++.... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999998641 124999999999999999999999999999999999999999999999998776543 447888
Q ss_pred ccEEEccCCCC-Cc--ccHHHHhhcCC-C--CCCCHHHHHHHHHHcCchH-HHHcCCCcccccccCCCCCCCHHHHHHHH
Q 006489 474 KISIVSQEPVL-FN--CSIEENIAYGC-D--GKASSADIENAAKMANAHD-FISNFPEKYQTFVGERGVRLSGGQKQRVA 546 (643)
Q Consensus 474 ~i~~V~Q~~~L-f~--gTireNI~~~~-~--~~~~~~~i~~al~~a~l~~-~i~~lp~G~~T~vge~G~~LSGGQrQRia 546 (643)
.|-+|+|||+- +| -||++-|.=.- + .+-..++++++++.+++.+ |....| ..||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 99999999984 33 46766663211 0 1123456899999999965 566777 457999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCC--eEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHhh
Q 006489 547 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGR--TVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 547 lARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~--TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
|||||.-+|++|||||||||||+...+.|.+-+.++.+++ |.|+|||+++.+.+ ||||+||++|+|||.++-+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999998877655 99999999999965 99999999999999999999987
Q ss_pred c-CChHHHHH
Q 006489 624 K-GGVYTALV 632 (643)
Q Consensus 624 ~-~g~y~~l~ 632 (643)
. .-.|.+..
T Consensus 232 ~~~h~ytr~L 241 (252)
T COG1124 232 HPSHPYTREL 241 (252)
T ss_pred CCccHHHHHH
Confidence 6 55665433
No 79
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.3e-47 Score=347.48 Aligned_cols=212 Identities=37% Similarity=0.553 Sum_probs=187.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|.+++|.|+|... + -..+++|++||+|||+||||||||||++++.||..|.+|+|.|+|+|....++.+ +-++
T Consensus 2 l~L~~V~~~y~~~---~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHL---P--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVS 74 (231)
T ss_pred ccccceEEeeCcc---e--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChh
Confidence 5788999999643 1 2578999999999999999999999999999999999999999999998877654 4799
Q ss_pred EEccCCCCCc-ccHHHHhhcCCCCC-----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFN-CSIEENIAYGCDGK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~Lf~-gTireNI~~~~~~~-----~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
+++||.-||. -||++||.+|..+. .+.++++.++..+++.++.+.|| ..||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHH
Confidence 9999999995 79999999996422 24567999999999999999999 4679999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhcCC
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKGG 626 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~~g 626 (643)
|+|+.||++||||+|||||.-++....-+.++. ++.|+++|||+++-+ +.+|+++++++|+|+++|+-+++.+..+
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 999999999999999999998887777766554 578999999999976 5699999999999999999999987544
No 80
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-47 Score=371.45 Aligned_cols=211 Identities=33% Similarity=0.544 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++|+|.+. ++|+||||++++|++++|+||||||||||+|+++|+.+|++|+|.++|.+.++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 49999999999743 59999999999999999999999999999999999999999999999988776543 5689
Q ss_pred EEEccCC---CCCcccHHHHhhcCCCCC---------CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 476 SIVSQEP---VLFNCSIEENIAYGCDGK---------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 476 ~~V~Q~~---~Lf~gTireNI~~~~~~~---------~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
|||||.. |=|+-||+|=+.+|.... .+.+++.+|++.+++.++..+ +|| .|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i~----~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QIG----ELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------ccc----ccCcHHHH
Confidence 9999954 669999999999984311 234789999999999986433 333 59999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
|+-|||||+++|++|+|||||+++|+.++..|.+-|.++.+ ||||++|||+++.+. .+|+|+.| |++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 99999999999999999999999999999999999988764 899999999999985 59999999 5678889999997
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
.+.
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 653
No 81
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-46 Score=378.96 Aligned_cols=223 Identities=35% Similarity=0.567 Sum_probs=193.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCCCCCcccHHHHhhcCCC-CCCCHHHHHHHHHHcCch-HHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc
Q 006489 476 SIVSQEPVLFNCSIEENIAYGCD-GKASSADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 553 (643)
Q Consensus 476 ~~V~Q~~~Lf~gTireNI~~~~~-~~~~~~~i~~al~~a~l~-~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~ 553 (643)
+|++|++.+|+.|++||+.++.. ....++++.++++..++. +... .....||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYAT-----------RDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhh-----------CCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999987632 112245567777777774 2222 3456899999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhcC-ChHH
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKG-GVYT 629 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~~-g~y~ 629 (643)
+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.... ..|.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 9999999999999999999999999988753 799999999999986 59999999999999999999988643 3454
Q ss_pred HHH
Q 006489 630 ALV 632 (643)
Q Consensus 630 ~l~ 632 (643)
+.+
T Consensus 229 ~~~ 231 (241)
T PRK14250 229 KLF 231 (241)
T ss_pred HHH
Confidence 433
No 82
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-47 Score=398.99 Aligned_cols=217 Identities=33% Similarity=0.550 Sum_probs=188.3
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---Hh
Q 006489 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH---LH 472 (643)
Q Consensus 397 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---lr 472 (643)
|+++|++|+|+... +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 357999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cccEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHH
Q 006489 473 RKISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 546 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRia 546 (643)
++|+||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.++.... ...||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRY-----------PAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999986 799999987521 0122 23466677777776654443 3679999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHhh
Q 006489 547 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 547 lARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
|||||+++|+|+|||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988753 7899999999999865 99999999999999999999976
Q ss_pred c
Q 006489 624 K 624 (643)
Q Consensus 624 ~ 624 (643)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
No 83
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-47 Score=387.69 Aligned_cols=214 Identities=32% Similarity=0.548 Sum_probs=191.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-|+++|++|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+..+++++|
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999742 4699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCC--CCCcccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 476 SIVSQEP--VLFNCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 476 ~~V~Q~~--~Lf~gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
+||+|+| .+|..|++||+.++.. ...+ ++++.++++.+++.++....| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6889999999998621 0122 345788889999988777666 37999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHh
Q 006489 549 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 549 RAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
|||+.+|+++||||||++||+.+...+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999998874 478999999999998 569999999999999999987653
No 84
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-47 Score=388.15 Aligned_cols=217 Identities=35% Similarity=0.603 Sum_probs=194.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-|+++||+++|++. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999743 35699999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEccCC--CCCcccHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 476 SIVSQEP--VLFNCSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 476 ~~V~Q~~--~Lf~gTireNI~~~~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
+|++|++ .+++.|++|||.++... ..+ ++++.++++.+++.+++...| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 46788999999885210 122 245788889999988877776 37999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 549 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 549 RAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|||+.+|+|+||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998764 7899999999999999999999999999999999988654
No 85
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=6.8e-47 Score=376.06 Aligned_cols=212 Identities=24% Similarity=0.426 Sum_probs=183.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++||+++|++. +.++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5799999999752 24699999999999999999999999999999999999999999999999998764 366788999
Q ss_pred EEccCCCCC-cccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVLF-NCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~Lf-~gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
||+|++.+| ..|++||+.+... ...+ ++++.++++..++.+..... ..+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKR-----------ARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhCh-----------hhhCCHHHHHHHHHHHH
Confidence 999999998 6899999987421 0112 24466777777776544322 35799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999998877899999999999986 5999999999999999999875
No 86
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.9e-47 Score=370.63 Aligned_cols=200 Identities=32% Similarity=0.535 Sum_probs=183.3
Q ss_pred EEEEeEEEECCCCCC--CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 397 VELDDVWFAYPSRPN--HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
|+++||+++|++..+ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999975311 3699999999999999999999999999999999999999999999999 7
Q ss_pred cEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC
Q 006489 475 ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 554 (643)
Q Consensus 475 i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~ 554 (643)
|+|++|+|.+|+.|++||+.++. ..+++++.++++.+++.+++..+|.|++|.+.+....||||||||++||||++++
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~ 145 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD 145 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC--CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999973 3566678899999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHH-HHHHc-CCCeEEEEccCchhHhhcCeEEEEeCCE
Q 006489 555 PRILLLDEATSALDAESEYLVQDA-MDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGE 611 (643)
Q Consensus 555 p~IliLDE~TSaLD~~te~~i~~~-i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl~~G~ 611 (643)
|+++||||||++||+++.+.+.+. ++... +++|+|+|||+++.++.||+|++|++|+
T Consensus 146 p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999998888774 55543 4689999999999999999999999985
No 87
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-46 Score=388.59 Aligned_cols=218 Identities=29% Similarity=0.538 Sum_probs=187.1
Q ss_pred EEEEeEEEECCCCC--CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC--HHHHh
Q 006489 397 VELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS--HEHLH 472 (643)
Q Consensus 397 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~--~~~lr 472 (643)
|+++||+|+|++.. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 89999999997531 146999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cccEEEccCC--CCCcccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 473 RKISIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 473 ~~i~~V~Q~~--~Lf~gTireNI~~~~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
++|+||||+| .+|+.|++|||.++.. ...+. +++.++++.+++. +.+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 6789999999988631 12333 3456777777765 11123344578999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHh
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
+|||||+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+.+++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999988753 78999999999987 569999999999999999999976
Q ss_pred h
Q 006489 623 S 623 (643)
Q Consensus 623 ~ 623 (643)
+
T Consensus 234 ~ 234 (287)
T PRK13637 234 K 234 (287)
T ss_pred h
Confidence 5
No 88
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6.7e-47 Score=380.24 Aligned_cols=213 Identities=28% Similarity=0.487 Sum_probs=182.5
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH-hccc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HRKI 475 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~i 475 (643)
++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999964 369999999999999999999999999999999999999999999999999988876654 5779
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCCCC-C----------C----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCH
Q 006489 476 SIVSQEPVLFNC-SIEENIAYGCDGK-A----------S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 539 (643)
Q Consensus 476 ~~V~Q~~~Lf~g-TireNI~~~~~~~-~----------~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSG 539 (643)
+|+||++.+|.+ |++|||.++.... . . .+++.++++..++ +.........|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL-----------ADLADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc-----------cchhhCChhhCCH
Confidence 999999999986 9999998763210 0 0 1123344444443 3334455678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcC
Q 006489 540 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGT 617 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~ 617 (643)
|||||++||||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999999998865 68899999999999865 99999999999999999
Q ss_pred hhHHhh
Q 006489 618 HEELLS 623 (643)
Q Consensus 618 ~~eL~~ 623 (643)
++++.+
T Consensus 227 ~~~~~~ 232 (236)
T cd03219 227 PDEVRN 232 (236)
T ss_pred HHHhcc
Confidence 998865
No 89
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4.6e-47 Score=376.13 Aligned_cols=204 Identities=31% Similarity=0.507 Sum_probs=178.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH---HHhc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE---HLHR 473 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~lr~ 473 (643)
|+++|++++|++. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999643 24699999999999999999999999999999999999999999999999999876643 4788
Q ss_pred ccEEEccCCCCCc-ccHHHHhhcCCC-----CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 474 KISIVSQEPVLFN-CSIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~-gTireNI~~~~~-----~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
+++|++|++.+|. .|++||+.++.. .+..++++.++++..++.++....| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999986 699999987421 0112456788899988877766555 4799999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEE
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEI 612 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~I 612 (643)
||||+++|+++||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998864 4789999999999986 5899999999975
No 90
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=382.68 Aligned_cols=220 Identities=32% Similarity=0.505 Sum_probs=189.8
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCCC--CC
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVE--IS 467 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~~ 467 (643)
.-|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|++||.++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 35999999999964 3699999999999999999999999999999999999987 48999999999863 34
Q ss_pred HHHHhcccEEEccCCCCCcccHHHHhhcCCC-CC-CC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHH
Q 006489 468 HEHLHRKISIVSQEPVLFNCSIEENIAYGCD-GK-AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 541 (643)
Q Consensus 468 ~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~-~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 541 (643)
...+|+.|+|++|++.+|+.|++|||.++.. .. .+ ++++.++++.+++.+.+ ++.+++ ...+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHH
Confidence 5678899999999999999999999987631 01 11 34567777777775433 233444 467899999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhH
Q 006489 542 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 542 rQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~e 620 (643)
|||++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999877899999999999975 599999999999999999999
Q ss_pred Hhhc
Q 006489 621 LLSK 624 (643)
Q Consensus 621 L~~~ 624 (643)
+.+.
T Consensus 236 ~~~~ 239 (254)
T PRK14273 236 LFFN 239 (254)
T ss_pred HHhC
Confidence 8754
No 91
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-46 Score=397.44 Aligned_cols=214 Identities=33% Similarity=0.501 Sum_probs=190.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.++++. ++.|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999952 24699999999999999999999999999999999999999999999999999887764 4789
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++....| ..||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 699999998732 1122 345778899999988877777 479999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.++
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999987754 78999999999876 56999999999999999999999765
No 92
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-47 Score=383.10 Aligned_cols=219 Identities=32% Similarity=0.535 Sum_probs=190.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEECCEeCCC--CCH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVE--ISH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~~ 468 (643)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4999999999964 369999999999999999999999999999999999974 589999999999875 345
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCC-CC-----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-GK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~-----~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
..+|+.|+|++|++.+|+.|++||+.++.. .. ..++++.++++.+++.+++.. .......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 678899999999999999999999987521 01 123467778888888655432 33456789999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
||++|||||+++|+|+||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999885 5999999999999999999998
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 754
No 93
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-46 Score=379.97 Aligned_cols=213 Identities=34% Similarity=0.530 Sum_probs=184.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC---HHHHhc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS---HEHLHR 473 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~---~~~lr~ 473 (643)
++++|++++|++. .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4789999999741 46999999999999999999999999999999999999999999999999998876 456788
Q ss_pred ccEEEccCCCCCc-ccHHHHhhcCCCC-------------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCH
Q 006489 474 KISIVSQEPVLFN-CSIEENIAYGCDG-------------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 539 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~-gTireNI~~~~~~-------------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSG 539 (643)
.++|+||++.+|. .|++||+.++... +..++++.++++..++.+.. ......|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-----------YQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----------CCCcccCCH
Confidence 9999999999886 7999999875210 11233456666666665433 334678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEc
Q 006489 540 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 616 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G 616 (643)
|||||++||||++++|+|+|||||||+||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999998875 3799999999999987 69999999999999999
Q ss_pred ChhHHh
Q 006489 617 THEELL 622 (643)
Q Consensus 617 ~~~eL~ 622 (643)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 999874
No 94
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-47 Score=397.02 Aligned_cols=213 Identities=32% Similarity=0.537 Sum_probs=189.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++ .+++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999964 368999999999999999999999999999999999999999999999999987764 35789
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++....| ..||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999998632 0122 356788888888877665554 579999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++++.++
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988754 78999999999987 56999999999999999999999865
No 95
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-46 Score=387.59 Aligned_cols=216 Identities=28% Similarity=0.491 Sum_probs=186.0
Q ss_pred EEEEeEEEECCCCC--CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCC----CCHHH
Q 006489 397 VELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE----ISHEH 470 (643)
Q Consensus 397 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~----~~~~~ 470 (643)
|+++|++|+|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997431 1369999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcccEEEccCC--CCCcccHHHHhhcCCC-CCCCH----HHHHHHHHHcCch-HHHHcCCCcccccccCCCCCCCHHHH
Q 006489 471 LHRKISIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 471 lr~~i~~V~Q~~--~Lf~gTireNI~~~~~-~~~~~----~~i~~al~~a~l~-~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
+|+.|+||+|+| .+|+.|+.||+.|+.. ...+. +++.++++.+++. ++.. ....+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-----------KSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-----------CCcccCCHHHH
Confidence 899999999998 7999999999998732 01222 3466677777774 2322 33468999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~e 620 (643)
||++|||||+.+|+|+||||||++||+.+...+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|+|++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998764 478999999999988 5699999999999999999999
Q ss_pred Hhh
Q 006489 621 LLS 623 (643)
Q Consensus 621 L~~ 623 (643)
+..
T Consensus 231 ~~~ 233 (288)
T PRK13643 231 VFQ 233 (288)
T ss_pred HHc
Confidence 865
No 96
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.2e-46 Score=380.72 Aligned_cols=218 Identities=34% Similarity=0.551 Sum_probs=189.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCC-----CCEEEECCEeCCCC--CHH
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI-----KGKILLNGVPLVEI--SHE 469 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~-----~G~I~idg~~i~~~--~~~ 469 (643)
|+++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999974 35999999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHhcccEEEccCCCCCcccHHHHhhcCCC-CC-CC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 470 HLHRKISIVSQEPVLFNCSIEENIAYGCD-GK-AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 470 ~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~-~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
.+|+.|+|+||++.+|+.|++||+.++.. .. .+ ++++.++++..++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 77889999999999999999999987521 01 12 245677888888864432 1223445789999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHh
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
|++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998876789999999999875 59999999999999999999987
Q ss_pred hc
Q 006489 623 SK 624 (643)
Q Consensus 623 ~~ 624 (643)
+.
T Consensus 232 ~~ 233 (247)
T TIGR00972 232 TN 233 (247)
T ss_pred hC
Confidence 54
No 97
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=5.9e-47 Score=398.33 Aligned_cols=202 Identities=32% Similarity=0.515 Sum_probs=181.4
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH----hcccEEEccCCCCCc-
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL----HRKISIVSQEPVLFN- 486 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l----r~~i~~V~Q~~~Lf~- 486 (643)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|++||.++...+...+ |++|+||+|++++|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 468999999999999999999999999999999999999999999999999999998887 789999999999997
Q ss_pred ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Q 006489 487 CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 561 (643)
Q Consensus 487 gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLD 561 (643)
.||+|||.++.. ...+ ++++.++++.++|.++....| .+||||||||++|||||+++|+|+|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 599999998632 0122 355778888888877766655 479999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 562 EATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 562 E~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||||+||+.+.+.+++.+.++. .++|+|+|||+++.+ +.||+|++|++|+|++.|+++|++++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999999999999998764 379999999999975 66999999999999999999999865
No 98
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.7e-47 Score=379.57 Aligned_cols=212 Identities=32% Similarity=0.506 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999974 369999999999999999999999999999999999999999999999999876653 367899
Q ss_pred EEccCCCCCc-ccHHHHhhcCCCC-CC----C----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHH
Q 006489 477 IVSQEPVLFN-CSIEENIAYGCDG-KA----S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 546 (643)
Q Consensus 477 ~V~Q~~~Lf~-gTireNI~~~~~~-~~----~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRia 546 (643)
||+|+|.+|. .|++||+.++... .. + ++++.++++..++.+..... ..+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 9999999985 6999999876310 11 1 23456677777776554443 3679999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhh
Q 006489 547 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 547 lARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
|||||+++|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999988753 789999999999865 599999999999999999999876
Q ss_pred c
Q 006489 624 K 624 (643)
Q Consensus 624 ~ 624 (643)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 4
No 99
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-47 Score=389.69 Aligned_cols=213 Identities=36% Similarity=0.600 Sum_probs=192.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++||+.+|.+ ..+++|+||+|++||++++.|||||||||++++|+||.+|++|+|.+||+|+..++++ ++.|
T Consensus 5 ~l~i~~v~k~yg~---~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecCC---eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 5999999999973 4799999999999999999999999999999999999999999999999999998865 4589
Q ss_pred EEEccCCCCC-cccHHHHhhcCCC--CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 476 SIVSQEPVLF-NCSIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 476 ~~V~Q~~~Lf-~gTireNI~~~~~--~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
++|+|+.-|| +-||+|||.||-. .... ++++.++++.+++.++-...| ..|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 9999999999 5899999999953 1122 247899999999999887777 56799999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchh-HhhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 549 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLST-VQSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 549 RAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~-i~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|||..+|++|+||||.||||.+-....+..++++. .+.|.|+|||+-+. +.-+|||.||++|+|.+.|+++|+..+
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 99999999999999999999998888888876543 38899999999875 678999999999999999999999875
No 100
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-46 Score=381.09 Aligned_cols=221 Identities=33% Similarity=0.528 Sum_probs=192.1
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEECCEeCCC--C
Q 006489 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVE--I 466 (643)
Q Consensus 394 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~ 466 (643)
.+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 356999999999964 369999999999999999999999999999999999986 589999999999863 4
Q ss_pred CHHHHhcccEEEccCCCCCcccHHHHhhcCCC--CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHH
Q 006489 467 SHEHLHRKISIVSQEPVLFNCSIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 540 (643)
Q Consensus 467 ~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~--~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 540 (643)
+...+|++|+|++|++.+|+.|++||+.++.. ...+ +++++++++.+++.+.+. ..+.+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 56678999999999999999999999987521 0122 245677888887755432 2345667899999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChh
Q 006489 541 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHE 619 (643)
Q Consensus 541 QrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~ 619 (643)
||||++||||++++|+|+||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877889999999999885 59999999999999999999
Q ss_pred HHhhc
Q 006489 620 ELLSK 624 (643)
Q Consensus 620 eL~~~ 624 (643)
++.+.
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 98764
No 101
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.5e-46 Score=379.35 Aligned_cols=213 Identities=34% Similarity=0.527 Sum_probs=184.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH---HHHhc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH---EHLHR 473 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~---~~lr~ 473 (643)
|+++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 789999999962 2469999999999999999999999999999999999999999999999999987764 34688
Q ss_pred ccEEEccCCCCCc-ccHHHHhhcCCCC-------------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCH
Q 006489 474 KISIVSQEPVLFN-CSIEENIAYGCDG-------------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 539 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~-gTireNI~~~~~~-------------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSG 539 (643)
.++||||++.+|. .|++||+.++... ...++++.++++..++.+++. .....|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCH
Confidence 9999999999986 6999999875210 111334666677776655433 34578999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEc
Q 006489 540 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 616 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G 616 (643)
|||||++|||||+++|+++|||||||+||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999988743 789999999999985 59999999999999999
Q ss_pred ChhHHh
Q 006489 617 THEELL 622 (643)
Q Consensus 617 ~~~eL~ 622 (643)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999874
No 102
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-46 Score=384.43 Aligned_cols=219 Identities=32% Similarity=0.530 Sum_probs=187.9
Q ss_pred EEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH----hc
Q 006489 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL----HR 473 (643)
Q Consensus 398 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l----r~ 473 (643)
.++|++++|.+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+..++ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777753 368999999999999999999999999999999999999999999999999988776543 46
Q ss_pred ccEEEccCCCCCc-ccHHHHhhcCCC-CCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 474 KISIVSQEPVLFN-CSIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~-gTireNI~~~~~-~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
+++|+||++.+|. .|++||+.++.. ... .++++.++++.+++.+++...| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 8999999999984 699999987421 011 2345778888989888777666 3799999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|||++++|+|+||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988743 799999999999874 5999999999999999999999764
Q ss_pred -CChHHH
Q 006489 625 -GGVYTA 630 (643)
Q Consensus 625 -~g~y~~ 630 (643)
...|.+
T Consensus 252 ~~~~~~~ 258 (269)
T cd03294 252 PANDYVR 258 (269)
T ss_pred cCcHHHH
Confidence 444544
No 103
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-46 Score=383.97 Aligned_cols=219 Identities=31% Similarity=0.547 Sum_probs=192.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-|+++|++|+|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 38999999999753234699999999999999999999999999999999999999999999999999888878889999
Q ss_pred EEEccCC--CCCcccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 476 SIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 476 ~~V~Q~~--~Lf~gTireNI~~~~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
+|++|+| .+++.|+.|||.++.. ...++ +++.++++.+++.++.... ...||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 4678999999987521 12233 3457788888887765543 367999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcC
Q 006489 549 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG 625 (643)
Q Consensus 549 RAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~ 625 (643)
|||+++|+|+||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 999999999999999999999999999999988754 78999999999999999999999999999999999987643
No 104
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-46 Score=386.74 Aligned_cols=217 Identities=27% Similarity=0.491 Sum_probs=184.7
Q ss_pred EEEEeEEEECCCCC--CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCC----CHHH
Q 006489 397 VELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI----SHEH 470 (643)
Q Consensus 397 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~----~~~~ 470 (643)
|+++|++|+|++.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999997432 24699999999999999999999999999999999999999999999999999754 3467
Q ss_pred HhcccEEEccCC--CCCcccHHHHhhcCCCC-CCCHHH----HHHHHHHcCchHHHHcCCCccccc-ccCCCCCCCHHHH
Q 006489 471 LHRKISIVSQEP--VLFNCSIEENIAYGCDG-KASSAD----IENAAKMANAHDFISNFPEKYQTF-VGERGVRLSGGQK 542 (643)
Q Consensus 471 lr~~i~~V~Q~~--~Lf~gTireNI~~~~~~-~~~~~~----i~~al~~a~l~~~i~~lp~G~~T~-vge~G~~LSGGQr 542 (643)
+|++|+||+|+| .+|+.|++|||.++... ..+.++ +.++++.+++ ++. ......+||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~~LSgGq~ 151 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGF-----------SRDVMSQSPFQMSGGQM 151 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCC-----------ChhhhhCCcccCCHHHH
Confidence 899999999997 68889999999986321 233333 3344444444 322 2345678999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChh
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHE 619 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~ 619 (643)
||++|||||+.+|+|+||||||++||+.+...+.+.|+++. .++|+|+|||+++.+ +.||+|++|++|+|++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998874 479999999999987 569999999999999999999
Q ss_pred HHhhc
Q 006489 620 ELLSK 624 (643)
Q Consensus 620 eL~~~ 624 (643)
++.+.
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 98764
No 105
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2e-46 Score=395.04 Aligned_cols=213 Identities=31% Similarity=0.502 Sum_probs=189.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 3689999999999999999999999999999999999999999999999999887654 6789
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+||+|++.+|+ .|++|||.|+.. ...+ ++++.++++..++.++.+..| ..||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 799999998732 1122 345777888888877665544 679999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||+++|+++|||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.++
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988754 78999999999986 56999999999999999999999875
No 106
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3e-46 Score=372.05 Aligned_cols=213 Identities=29% Similarity=0.443 Sum_probs=180.2
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH-hccc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HRKI 475 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~i 475 (643)
|+++||+++|++ .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.... |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 579999999964 369999999999999999999999999999999999999999999999999988876654 6789
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCCCCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFNC-SIEENIAYGCDGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 476 ~~V~Q~~~Lf~g-TireNI~~~~~~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
+|+||++.+|.. |++||+.++.. ... .+++.++++.. ..++ .........||||||||++||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~l~~~------~~l~----~~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAY-ARRRAKRKARLERVYELF------PRLK----ERRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhh-hcCchhHHHHHHHHHHHH------Hhhh----hhhhCchhhCCHHHHHHHHHHHH
Confidence 999999999986 99999988642 121 11222333332 1122 22334567899999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhh
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
++++|+++||||||++||+++...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 999999999999999999999999999998875 4789999999999875 599999999999999999988753
No 107
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-46 Score=372.16 Aligned_cols=204 Identities=35% Similarity=0.561 Sum_probs=177.5
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 578999999964 369999999999999999999999999999999999999999999999999986543 567899
Q ss_pred EEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
|+||++.+|. .|++||+.++.. ...+ ++++.++++..++.++....| .+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999885 699999987521 0112 345677788887776655544 5799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEc
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 616 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G 616 (643)
|+++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999998864 3789999999999875 59999999999998875
No 108
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-46 Score=374.91 Aligned_cols=216 Identities=34% Similarity=0.543 Sum_probs=186.7
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH---HHh
Q 006489 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE---HLH 472 (643)
Q Consensus 397 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~lr 472 (643)
|+++|++++|++.. ..++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. .++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997431 12799999999999999999999999999999999999999999999999999877654 357
Q ss_pred cccEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHH
Q 006489 473 RKISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 546 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRia 546 (643)
+.++|+||++.+|. .|++||+.++.. ...+ .+++.++++..++.+.....| .+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP-----------AQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh-----------hhCCHHHHHHHH
Confidence 88999999999997 699999987521 0122 345677777777766555433 679999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhh
Q 006489 547 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 547 lARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999988753 789999999999986 499999999999999999998765
No 109
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-46 Score=379.80 Aligned_cols=219 Identities=31% Similarity=0.486 Sum_probs=188.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCC--CCCH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLV--EISH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~--~~~~ 468 (643)
.|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999964 3699999999999999999999999999999999999987 4999999999997 4566
Q ss_pred HHHhcccEEEccCCCCCcc-cHHHHhhcCCC-CC------CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHH
Q 006489 469 EHLHRKISIVSQEPVLFNC-SIEENIAYGCD-GK------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 540 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~g-TireNI~~~~~-~~------~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 540 (643)
..+|++++|++|++.+|.. |++||+.++.. .. ..++++.++++..++.+++.. ........||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHH
Confidence 6788999999999999975 99999987521 01 112346677777776544322 234556789999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChh
Q 006489 541 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHE 619 (643)
Q Consensus 541 QrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~ 619 (643)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877899999999999975 59999999999999999999
Q ss_pred HHhhc
Q 006489 620 ELLSK 624 (643)
Q Consensus 620 eL~~~ 624 (643)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 98764
No 110
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-46 Score=384.78 Aligned_cols=216 Identities=29% Similarity=0.511 Sum_probs=188.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCC--CCCHHHHhc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV--EISHEHLHR 473 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~--~~~~~~lr~ 473 (643)
-|+++|++|+|++ .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 246999999999999999999999999999999999999999999999999984 345667899
Q ss_pred ccEEEccCC--CCCcccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHH
Q 006489 474 KISIVSQEP--VLFNCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 546 (643)
Q Consensus 474 ~i~~V~Q~~--~Lf~gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRia 546 (643)
.|+|++|++ .+|+.|++||+.++.. ...+ ++++.++++.+++.++. .....+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 999999998 6789999999987521 0122 24467777888876543 2346789999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhh
Q 006489 547 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 547 lARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
|||||+.+|+||||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999988754 799999999999986 699999999999999999999876
Q ss_pred c
Q 006489 624 K 624 (643)
Q Consensus 624 ~ 624 (643)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
No 111
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-46 Score=374.27 Aligned_cols=211 Identities=29% Similarity=0.444 Sum_probs=181.3
Q ss_pred cEEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---H
Q 006489 396 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH---L 471 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---l 471 (643)
-++++||+|+|++.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997531 146999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cccEEEccCCCCCcc-cHHHHhhcCCC-CCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHH
Q 006489 472 H-RKISIVSQEPVLFNC-SIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 472 r-~~i~~V~Q~~~Lf~g-TireNI~~~~~-~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
| +.++|++|++.+|+. |++||+.++.. ... .++++.++++..++.+.... ...+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH-----------RPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHH
Confidence 3 679999999999975 99999987311 011 23456677777776554433 346799999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcC
Q 006489 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 617 (643)
Q Consensus 545 ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~ 617 (643)
++||||++.+|+|+||||||++||+.+...+.+.|+++. +++|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998874 4799999999999999999999999999998875
No 112
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-46 Score=381.46 Aligned_cols=221 Identities=31% Similarity=0.489 Sum_probs=191.7
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCCC--C
Q 006489 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVE--I 466 (643)
Q Consensus 394 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~ 466 (643)
.+.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|++||.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 346999999999964 3699999999999999999999999999999999999975 89999999999875 4
Q ss_pred CHHHHhcccEEEccCCCCCcccHHHHhhcCCC-CC-----C-CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCH
Q 006489 467 SHEHLHRKISIVSQEPVLFNCSIEENIAYGCD-GK-----A-SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 539 (643)
Q Consensus 467 ~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~-----~-~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSG 539 (643)
+...+|+.++|++|++.+|+.|++||+.++.. .. . .++++.++++.+++.+++. .........|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 56678899999999999999999999987521 01 1 1345677888888865443 223455778999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcCh
Q 006489 540 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTH 618 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~ 618 (643)
|||||++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999998877889999999999985 5899999999999999999
Q ss_pred hHHhhc
Q 006489 619 EELLSK 624 (643)
Q Consensus 619 ~eL~~~ 624 (643)
+++...
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 998753
No 113
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-46 Score=381.98 Aligned_cols=217 Identities=33% Similarity=0.618 Sum_probs=191.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999743 35799999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--CCCcccHHHHhhcCCC-CCCCHH----HHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 476 SIVSQEP--VLFNCSIEENIAYGCD-GKASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 476 ~~V~Q~~--~Lf~gTireNI~~~~~-~~~~~~----~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
+|++|+| .+++.|++|||.++.. ...+.+ ++.++++..++.+++...| .+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP-----------QNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 4567899999987521 012332 3567778888877665544 68999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 549 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 549 RAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999988753 4899999999999999999999999999999999887654
No 114
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-46 Score=385.85 Aligned_cols=218 Identities=27% Similarity=0.454 Sum_probs=186.4
Q ss_pred EEEEeEEEECCCCC--CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCC----CCHHH
Q 006489 397 VELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE----ISHEH 470 (643)
Q Consensus 397 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~----~~~~~ 470 (643)
|+++|++|+|++.. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999997431 1469999999999999999999999999999999999999999999999999864 34567
Q ss_pred HhcccEEEccCC--CCCcccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 471 LHRKISIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 471 lr~~i~~V~Q~~--~Lf~gTireNI~~~~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
+|+.|+||+|+| .+|+.|++|||.++.. ...+. +++.++++.+++++.+. ......|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 888999999998 6889999999988631 01232 34567777777753321 2234689999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhH
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~e 620 (643)
|++|||||+.+|+++|||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999988753 789999999999875 699999999999999999998
Q ss_pred Hhhc
Q 006489 621 LLSK 624 (643)
Q Consensus 621 L~~~ 624 (643)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8643
No 115
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-46 Score=369.56 Aligned_cols=204 Identities=28% Similarity=0.478 Sum_probs=179.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++|+|++ .++++|+||++++| +++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|+.++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999964 36999999999999 99999999999999999999999999999999999998776 67889999
Q ss_pred EEccCCCCCcc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~Lf~g-TireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
|++|++.+|.+ |++||+.+... ...+ ++++.++++..++.++.+.. ...||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKK-----------IGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCc-----------hhhCCHHHHHHHHHHHH
Confidence 99999999976 99999986310 0111 34577888888887654432 35799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEc
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 616 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G 616 (643)
++++|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+. .||+|++|++|+|++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998877899999999999986 59999999999999765
No 116
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.9e-46 Score=392.87 Aligned_cols=212 Identities=33% Similarity=0.535 Sum_probs=188.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+.++ .+++|+
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 899999999964 369999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccCCCCCc-ccHHHHhhcCCCC-----CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHH
Q 006489 477 IVSQEPVLFN-CSIEENIAYGCDG-----KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 546 (643)
Q Consensus 477 ~V~Q~~~Lf~-gTireNI~~~~~~-----~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRia 546 (643)
||+|++.+|+ .|++|||.|+... ..+ ++++.++++..++.++....| ..||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 9999999997 5999999987320 122 346778888888877665554 579999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhh
Q 006489 547 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 547 lARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
|||||+++|+++|||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++.+
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988764 689999999999865 599999999999999999999986
Q ss_pred c
Q 006489 624 K 624 (643)
Q Consensus 624 ~ 624 (643)
+
T Consensus 227 ~ 227 (353)
T PRK10851 227 E 227 (353)
T ss_pred C
Confidence 5
No 117
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.3e-46 Score=371.72 Aligned_cols=205 Identities=33% Similarity=0.492 Sum_probs=176.3
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH----H
Q 006489 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH----L 471 (643)
Q Consensus 397 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~----l 471 (643)
|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997421 146999999999999999999999999999999999999999999999999998876432 4
Q ss_pred hcccEEEccCCCCCcc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 472 HRKISIVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 472 r~~i~~V~Q~~~Lf~g-TireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
+++++|++|++.+|.. |++||+.++.. ...+ ++++.++++..++.+..... ..+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHY-----------PSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcC-----------hhhcCHHHHHHH
Confidence 6789999999999976 99999988532 0111 34566777777776554433 368999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhhcCeEEEEeCCEE
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEI 612 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~aD~Iivl~~G~I 612 (643)
+|||||+++|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 7899999999999989999999999974
No 118
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-46 Score=381.09 Aligned_cols=215 Identities=32% Similarity=0.545 Sum_probs=191.2
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
++++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++...+...+++.++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999643 35999999999999999999999999999999999999999999999999998878888899999
Q ss_pred EEccCC--CCCcccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 477 IVSQEP--VLFNCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 477 ~V~Q~~--~Lf~gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
||+|++ .+|+.|++||+.++.. ...+ ++++.++++.+++.+++...| ..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 4788999999987521 0123 234678888888887766655 479999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||+.+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+ +.||+|++|++|++++.|+++++++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999988754 78999999999998 57999999999999999999998764
No 119
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-46 Score=380.73 Aligned_cols=216 Identities=34% Similarity=0.548 Sum_probs=192.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCC---CEEEECCEeCCCCCHHHHh
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK---GKILLNGVPLVEISHEHLH 472 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~---G~I~idg~~i~~~~~~~lr 472 (643)
.|+++|++|+|++. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++ |+|.+||.++...+...++
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 59999999999753 3469999999999999999999999999999999999999998 8999999999888877888
Q ss_pred cccEEEccCC--CCCcccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 473 RKISIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 473 ~~i~~V~Q~~--~Lf~gTireNI~~~~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
++|+||+|+| .+++.|++|||.++.. ...+. +++.++++.+++.++....| .+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999998 4678999999987632 12333 34778888889887766666 68999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhh
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
+|||||+++|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++.+
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988753 789999999999999999999999999999999998765
No 120
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-46 Score=375.60 Aligned_cols=217 Identities=33% Similarity=0.542 Sum_probs=186.3
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
++++||+++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999752 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
|+||++.+|. .|++||+.++.. ...+ ++++.++++..++.+ +........+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999995 799999987521 0112 234556666665543 012234457899999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999988753 79999999999976 56999999999999999999998754
No 121
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.2e-46 Score=368.06 Aligned_cols=200 Identities=33% Similarity=0.543 Sum_probs=176.6
Q ss_pred EEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEE
Q 006489 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISI 477 (643)
Q Consensus 398 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 477 (643)
+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ..++++|+|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999742 469999999999999999999999999999999999999999999999998864 457788999
Q ss_pred EccCC--CCCcccHHHHhhcCCCC-CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC
Q 006489 478 VSQEP--VLFNCSIEENIAYGCDG-KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 554 (643)
Q Consensus 478 V~Q~~--~Lf~gTireNI~~~~~~-~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~ 554 (643)
++|++ .+|+.|++||+.++.+. ...++++.++++.+++.++....| ..||||||||++|||||+++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 46789999999886321 123457889999999988766655 37999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHH-cCCCeEEEEccCchhHh-hcCeEEEEeCCEEE
Q 006489 555 PRILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIV 613 (643)
Q Consensus 555 p~IliLDE~TSaLD~~te~~i~~~i~~~-~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Iv 613 (643)
|+++||||||++||+++.+.+.+.|+++ .+++|+|++||+++.+. .||+|++|++|++|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999887 35789999999999986 59999999999985
No 122
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.6e-46 Score=343.21 Aligned_cols=209 Identities=32% Similarity=0.514 Sum_probs=186.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH---HHhc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE---HLHR 473 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~lr~ 473 (643)
|+|+||+.+|+.. +++|+||||+|++||++-|+||||||||||+|+|++...|+.|+|.++|.|+..+... -+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999975 5799999999999999999999999999999999999999999999999999888744 5899
Q ss_pred ccEEEccCCCCC-cccHHHHhhcCC-----CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 474 KISIVSQEPVLF-NCSIEENIAYGC-----DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 474 ~i~~V~Q~~~Lf-~gTireNI~~~~-----~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
+||+|+||-.|. +-|+.||+.|.- ++..-.+++.++++.++|.+-...|| ..|||||+||++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 999999999987 579999998852 21222456889999999999999999 5679999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHH-cCCCeEEEEccCchhHhhc-CeEEEEeCCEEEEEcCh
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTVQSA-DTVAVVSDGEIVESGTH 618 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~-~~~~TvI~VtHrl~~i~~a-D~Iivl~~G~Ive~G~~ 618 (643)
|||++.+|++||-||||-+||+++...|++.+.++ ..|-||++.||+.+.+..+ -+++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999888765 3588999999999999765 57899999999976544
No 123
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=9.4e-46 Score=371.69 Aligned_cols=221 Identities=29% Similarity=0.468 Sum_probs=186.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 789999999964 36999999999999999999999999999999999999999999999999998776544 45899
Q ss_pred EEccCCCC-CcccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVL-FNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~L-f~gTireNI~~~~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
|++|++.+ +..|++||+.++.. ...+. +++.++++..++ +.........||||||||++||||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGL-----------AERADDKVRELNGGHRRRVEIARA 146 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHH
Confidence 99999988 56899999987531 11222 233444444444 333455567899999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcC--C
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG--G 626 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~--g 626 (643)
++++|+|+||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+|++|++|++++.|+++++.+.. .
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 226 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGALGGA 226 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHHcCcc
Confidence 999999999999999999999999999998875 479999999999999899999999999999999999988653 2
Q ss_pred hHHHHH
Q 006489 627 VYTALV 632 (643)
Q Consensus 627 ~y~~l~ 632 (643)
.+.+.+
T Consensus 227 ~~~~~~ 232 (236)
T TIGR03864 227 DLEAAF 232 (236)
T ss_pred cHHHHH
Confidence 344444
No 124
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=6.4e-46 Score=395.12 Aligned_cols=222 Identities=27% Similarity=0.483 Sum_probs=196.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 3899999999974 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCC-CcccHHHHhhcCCCC---------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 476 SIVSQEPVL-FNCSIEENIAYGCDG---------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 476 ~~V~Q~~~L-f~gTireNI~~~~~~---------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
+||+|++.+ |+.|++||+.++... ..++++++++++.+++.++..+. ...||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----------~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----------VTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHH
Confidence 999999998 688999999886420 12345688999999998765442 357999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhh
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
+|||||+++|+|+||||||++||+.+...+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++|++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999998875 478999999999998 5699999999999999999999875
Q ss_pred cCChHHHHH
Q 006489 624 KGGVYTALV 632 (643)
Q Consensus 624 ~~g~y~~l~ 632 (643)
. ....+.+
T Consensus 229 ~-~~l~~~~ 236 (402)
T PRK09536 229 A-DTLRAAF 236 (402)
T ss_pred c-HHHHHHh
Confidence 3 2333444
No 125
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-46 Score=369.15 Aligned_cols=210 Identities=26% Similarity=0.465 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 579999999964 3699999999999999999999999999999999999999999999999988753 456788999
Q ss_pred EEccCCCCCc-ccHHHHhhcCCC-CCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFN-CSIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~Lf~-gTireNI~~~~~-~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
|++|++.+|. .|++||+.++.. ... .++++.++++..++.++....| ..||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999987 499999976411 011 2345778888888877655443 5799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
++.+|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999988653 689999999999986 4999999999999999998774
No 126
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-46 Score=381.50 Aligned_cols=218 Identities=28% Similarity=0.491 Sum_probs=192.4
Q ss_pred cEEEEeEEEECCCCC---CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC-HHHH
Q 006489 396 EVELDDVWFAYPSRP---NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS-HEHL 471 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~---~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~-~~~l 471 (643)
-|+++|++++|++.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997431 246999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hcccEEEccCCC--CCcccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHH
Q 006489 472 HRKISIVSQEPV--LFNCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 472 r~~i~~V~Q~~~--Lf~gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
|+.++|++|+|. +|..|+.||+.++.. ...+ +++++++++.+++.++....| ..||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 777799999988621 0122 355788899999988777665 5799999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHh
Q 006489 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 545 ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
++|||||+++|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+..||+|++|++|+|++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998874 378999999999999889999999999999999999987
Q ss_pred hc
Q 006489 623 SK 624 (643)
Q Consensus 623 ~~ 624 (643)
++
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
No 127
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=5.5e-46 Score=392.23 Aligned_cols=215 Identities=31% Similarity=0.528 Sum_probs=190.8
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCC--CEEEECCEeCCCCCHHHH
Q 006489 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK--GKILLNGVPLVEISHEHL 471 (643)
Q Consensus 394 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~--G~I~idg~~i~~~~~~~l 471 (643)
.+.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+||.++.+.++ .
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~ 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--H 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--H
Confidence 357999999999974 369999999999999999999999999999999999999999 999999999987665 3
Q ss_pred hcccEEEccCCCCCcc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 472 HRKISIVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 472 r~~i~~V~Q~~~Lf~g-TireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
++.|+||+|++.+|.. |++|||.|+.. ...+ ++++.++++..++.++....| .+||||||||+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRv 146 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRI 146 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHH
Confidence 5789999999999965 99999998631 1122 245778888888888777766 47999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC---CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHH
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK---GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~---~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL 621 (643)
+|||||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|+
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999987654 68999999999986 55999999999999999999999
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
.++
T Consensus 227 ~~~ 229 (362)
T TIGR03258 227 YDA 229 (362)
T ss_pred HhC
Confidence 865
No 128
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-46 Score=379.18 Aligned_cols=221 Identities=31% Similarity=0.502 Sum_probs=192.1
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCCC--C
Q 006489 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVE--I 466 (643)
Q Consensus 394 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~ 466 (643)
.+.|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999964 3699999999999999999999999999999999999984 89999999999865 4
Q ss_pred CHHHHhcccEEEccCCCCCcccHHHHhhcCCC-CCC-----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHH
Q 006489 467 SHEHLHRKISIVSQEPVLFNCSIEENIAYGCD-GKA-----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 540 (643)
Q Consensus 467 ~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~~-----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 540 (643)
+...+|+.++|++|++.+|+.|++||+.++.. ... .++++.++++.+++.+++. +..+.....||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 45678899999999999999999999987521 011 1244677778777765543 2345667899999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChh
Q 006489 541 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHE 619 (643)
Q Consensus 541 QrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~ 619 (643)
||||++||||++++|+|+||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 99999999999999999999999999999999999999998877899999999999875 59999999999999999999
Q ss_pred HHhhc
Q 006489 620 ELLSK 624 (643)
Q Consensus 620 eL~~~ 624 (643)
++.+.
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 98754
No 129
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-46 Score=378.95 Aligned_cols=217 Identities=31% Similarity=0.490 Sum_probs=190.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999753 34699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCC--CCcccHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 476 SIVSQEPV--LFNCSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 476 ~~V~Q~~~--Lf~gTireNI~~~~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
+|++|+|. ++..|+++|+.++... ..+ ++++.++++..++.++... ...+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHH
Confidence 99999985 4567899999876320 122 2356677777777665433 3468999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 549 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 549 RAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+|++.|+++++.+.
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999988753 7899999999999988999999999999999999998765
No 130
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=6.6e-46 Score=392.98 Aligned_cols=213 Identities=34% Similarity=0.573 Sum_probs=190.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4999999999964 3689999999999999999999999999999999999999999999999999887654 4689
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+||+|++.+|. .||+|||.|+.. ...+ ++++.++++..++.++....| ..||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 599999998732 1122 345778899999988888777 478999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||++..+ ..||+|++|++|+|++.|+++++.++
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988754 78999999999986 56999999999999999999999875
No 131
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-46 Score=352.93 Aligned_cols=215 Identities=36% Similarity=0.541 Sum_probs=190.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC---HHHHh
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS---HEHLH 472 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~---~~~lr 472 (643)
.|+++||+..||+ .+.+|+||||+|++||.|||+|+||||||||+++|.|+.+|++|+|.++|.++.... ...+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999985 467999999999999999999999999999999999999999999999999998887 66789
Q ss_pred cccEEEccCCCCCc-ccHHHHhhcCCCC----------CCC---HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 006489 473 RKISIVSQEPVLFN-CSIEENIAYGCDG----------KAS---SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 538 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~-gTireNI~~~~~~----------~~~---~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LS 538 (643)
++|||++|++-|-+ -|+.+|++.|.-. -++ .....+|++..++.+.-. .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 99999999999975 6999999988531 122 334567888888877643 3567899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEE
Q 006489 539 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVES 615 (643)
Q Consensus 539 GGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~ 615 (643)
|||+||++|||||+++|+|++=|||+|+|||.+.+.|++.|++.. .+.|+|+.-|.+++.+ .||||+-|++|+|+..
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999997654 5899999999999975 6999999999999999
Q ss_pred cChhHHhh
Q 006489 616 GTHEELLS 623 (643)
Q Consensus 616 G~~~eL~~ 623 (643)
|+.+||-+
T Consensus 230 g~~~el~~ 237 (258)
T COG3638 230 GPASELTD 237 (258)
T ss_pred CChhhhhH
Confidence 99999643
No 132
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=7.3e-46 Score=368.11 Aligned_cols=208 Identities=26% Similarity=0.453 Sum_probs=178.7
Q ss_pred EEEEeEEEECCCCCC-CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 397 VELDDVWFAYPSRPN-HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
|+++|++++|++... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999975311 269999999999999999999999999999999999999999999999999975 456778899
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~g-TireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+|++|++.+|.. |++||+.+... ...+ ++++.++++..++.+.+. .....||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999976421 0122 345667777777765543 345789999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEc
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 616 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G 616 (643)
|++++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998874 4789999999999875 59999999999998765
No 133
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-46 Score=375.14 Aligned_cols=219 Identities=32% Similarity=0.511 Sum_probs=189.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCCCCCHHH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVEISHEH 470 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~~~~~ 470 (643)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999964 3699999999999999999999999999999999999974 6999999999999888888
Q ss_pred HhcccEEEccCCCCC-cccHHHHhhcCCC-CC--CC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 471 LHRKISIVSQEPVLF-NCSIEENIAYGCD-GK--AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 471 lr~~i~~V~Q~~~Lf-~gTireNI~~~~~-~~--~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
+|+.|+|++|++.+| +.|++||+.++.. .. .+ ++++.++++.+++.+.+.. .+ .....+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~----~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RL----DAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hh----cCCcccCCHHHH
Confidence 999999999999765 6899999987521 01 11 3456778888887654321 12 333568999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
||++|||||+++|+|+||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999885 6999999999999999999998
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14247 233 FTN 235 (250)
T ss_pred HcC
Confidence 764
No 134
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-46 Score=383.68 Aligned_cols=217 Identities=25% Similarity=0.432 Sum_probs=185.1
Q ss_pred EEEEeEEEECCCCC--CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCC---------
Q 006489 397 VELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE--------- 465 (643)
Q Consensus 397 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~--------- 465 (643)
|+++|++|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 89999999997531 1369999999999999999999999999999999999999999999999987632
Q ss_pred ---------------CCHHHHhcccEEEccCC--CCCcccHHHHhhcCCC-CCCC----HHHHHHHHHHcCch-HHHHcC
Q 006489 466 ---------------ISHEHLHRKISIVSQEP--VLFNCSIEENIAYGCD-GKAS----SADIENAAKMANAH-DFISNF 522 (643)
Q Consensus 466 ---------------~~~~~lr~~i~~V~Q~~--~Lf~gTireNI~~~~~-~~~~----~~~i~~al~~a~l~-~~i~~l 522 (643)
.+...+|+.|+||+|+| .+|..|++|||.|+.. ...+ ++++.++++.+++. ++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-- 160 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ-- 160 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh--
Confidence 13467889999999986 6889999999998731 0123 23467777777775 3333
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhH-hh
Q 006489 523 PEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QS 600 (643)
Q Consensus 523 p~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i-~~ 600 (643)
.....||||||||++|||||+.+|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+ +.
T Consensus 161 ---------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 161 ---------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred ---------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 3346899999999999999999999999999999999999999999998764 489999999999976 66
Q ss_pred cCeEEEEeCCEEEEEcChhHHhhc
Q 006489 601 ADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 601 aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||+|++|++|+|++.|+.+++.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998654
No 135
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=7.2e-46 Score=368.96 Aligned_cols=206 Identities=32% Similarity=0.478 Sum_probs=176.2
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---Hh
Q 006489 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH---LH 472 (643)
Q Consensus 397 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---lr 472 (643)
|+++||+++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999997421 146999999999999999999999999999999999999999999999999998887644 34
Q ss_pred -cccEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 473 -RKISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 473 -~~i~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
+.++||+|++.+|+ .|++||+.++.. ...+ ++++.++++..++++..... ...||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHR-----------PSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHH
Confidence 68999999999995 699999987411 0122 23456677776665544433 367999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhhcCeEEEEeCCEEE
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIV 613 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~aD~Iivl~~G~Iv 613 (643)
+||||++++|+||||||||++||+++...+.+.|+++. .++|+|+|||+++.+..||+|++|++|+|+
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998875 378999999999999999999999999986
No 136
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-46 Score=377.02 Aligned_cols=219 Identities=31% Similarity=0.472 Sum_probs=188.4
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC--C---CCCEEEECCEeCCC--CCH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD--P---IKGKILLNGVPLVE--ISH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~--p---~~G~I~idg~~i~~--~~~ 468 (643)
-|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999974 369999999999999999999999999999999999987 3 59999999999864 445
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCC-CC-CCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-GK-ASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~-~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
..+|+.++|++|++.+|+.|++||+.++.. .. .++ +++.++++..++.+++. ..+......||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 678889999999999999999999987521 01 122 23556677777765432 223456778999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
||++||||++++|+|+||||||++||+++...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999975 5999999999999999999998
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
.+.
T Consensus 242 ~~~ 244 (259)
T PRK14274 242 FSN 244 (259)
T ss_pred hhC
Confidence 754
No 137
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=6.8e-46 Score=365.56 Aligned_cols=204 Identities=29% Similarity=0.444 Sum_probs=180.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .++|+|+||++++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++... ..++++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 579999999963 4699999999999999999999999999999999999999999999999988765 56788999
Q ss_pred EEccCCCCC-cccHHHHhhcCCC-CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC
Q 006489 477 IVSQEPVLF-NCSIEENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 554 (643)
Q Consensus 477 ~V~Q~~~Lf-~gTireNI~~~~~-~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~ 554 (643)
|+||++.+| +.|++||+.++.. ...+++++.++++..++.+..... ...||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcC
Confidence 999999988 5799999987531 123567788899999887765443 467999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEc
Q 006489 555 PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 616 (643)
Q Consensus 555 p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G 616 (643)
|+++||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998765 4789999999999986 59999999999999865
No 138
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.6e-45 Score=385.26 Aligned_cols=224 Identities=30% Similarity=0.445 Sum_probs=188.9
Q ss_pred cEEEEeEEEECCCCC----------CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCC
Q 006489 396 EVELDDVWFAYPSRP----------NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE 465 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~----------~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~ 465 (643)
-|+++|++++|+... ...+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999998
Q ss_pred CCHHH---HhcccEEEccCC--CCC-cccHHHHhhcCCC---CCCCH----HHHHHHHHHcCchH-HHHcCCCccccccc
Q 006489 466 ISHEH---LHRKISIVSQEP--VLF-NCSIEENIAYGCD---GKASS----ADIENAAKMANAHD-FISNFPEKYQTFVG 531 (643)
Q Consensus 466 ~~~~~---lr~~i~~V~Q~~--~Lf-~gTireNI~~~~~---~~~~~----~~i~~al~~a~l~~-~i~~lp~G~~T~vg 531 (643)
++..+ +|++|+||+|+| .+| ..||.|||.+... ...+. +++.++++.+++.+ ....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~---------- 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR---------- 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcC----------
Confidence 87654 678999999998 477 5899999965310 02333 33556677777732 2233
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhh-cCeEEEEe
Q 006489 532 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVS 608 (643)
Q Consensus 532 e~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~-aD~Iivl~ 608 (643)
....||||||||++|||||+.+|+++|+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||+
T Consensus 158 -~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 158 -YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 3468999999999999999999999999999999999999999999988754 7899999999999975 99999999
Q ss_pred CCEEEEEcChhHHhhc-CChHHH
Q 006489 609 DGEIVESGTHEELLSK-GGVYTA 630 (643)
Q Consensus 609 ~G~Ive~G~~~eL~~~-~g~y~~ 630 (643)
+|+|+|.|+.+++.++ ...|.+
T Consensus 237 ~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 237 LGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CCEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999864 345655
No 139
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=374.25 Aligned_cols=220 Identities=35% Similarity=0.546 Sum_probs=189.2
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCCC--CC
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVE--IS 467 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~~ 467 (643)
+.|+++||+++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999974 3699999999999999999999999999999999999763 69999999999875 45
Q ss_pred HHHHhcccEEEccCCCCCcccHHHHhhcCCC-CCC-----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHH
Q 006489 468 HEHLHRKISIVSQEPVLFNCSIEENIAYGCD-GKA-----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 541 (643)
Q Consensus 468 ~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~~-----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 541 (643)
...+|+.++|++|++.+|+.|++||+.++.. ... .++++.++++.+++.+.+. .........|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 5678899999999999999999999987521 011 1345666777777654443 22345567899999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhH
Q 006489 542 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 542 rQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~e 620 (643)
|||++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998877899999999999875 599999999999999999999
Q ss_pred Hhhc
Q 006489 621 LLSK 624 (643)
Q Consensus 621 L~~~ 624 (643)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 8753
No 140
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-46 Score=375.27 Aligned_cols=219 Identities=33% Similarity=0.519 Sum_probs=188.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcC---CCC--CCCEEEECCEeCCCC--CH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF---YDP--IKGKILLNGVPLVEI--SH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~---~~p--~~G~I~idg~~i~~~--~~ 468 (643)
.|+++|+++.|++ .++|+|+||++++||.++|+|+||||||||+++|+|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999964 3699999999999999999999999999999999997 454 589999999998764 34
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCC-CC-----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-GK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~-----~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
..+|+.|+|+||++.+|+.|++||+.++.. .. ..+++++++++.+++.+++. +........||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 678889999999999999999999987521 01 12345667777777765443 233456789999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999985 5999999999999999999998
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 764
No 141
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-46 Score=375.35 Aligned_cols=219 Identities=32% Similarity=0.517 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEECCEeCCC--CCH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVE--ISH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~~ 468 (643)
.|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999964 369999999999999999999999999999999999997 479999999999864 345
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCC-CCC-----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-GKA-----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~~-----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
..+|+.++|++|++.+|+.|++||+.++.. ... .++++.++++.+++++.. .........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 667889999999999999999999987521 011 123466677777764321 1122345679999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL 621 (643)
||++||||++++|+++||||||++||+++...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999764 999999999999999999998
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
...
T Consensus 234 ~~~ 236 (251)
T PRK14251 234 FIA 236 (251)
T ss_pred HhC
Confidence 754
No 142
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1e-45 Score=370.68 Aligned_cols=213 Identities=29% Similarity=0.474 Sum_probs=181.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH-hccc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HRKI 475 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~i 475 (643)
|+++|++++|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999964 369999999999999999999999999999999999999999999999999988776554 5689
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFNC-SIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~g-TireNI~~~~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+|++|++.+|++ |++||+.++.+ ...+. +++.++++..++ +.........||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHI-----------THLRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHHHHHHH
Confidence 999999999986 99999987532 11222 223344444444 33344556789999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhh
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
|++++|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+ +.||+|++|++|++++.|+++++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999999998775 478999999999766 5599999999999999999998764
No 143
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-45 Score=377.09 Aligned_cols=220 Identities=30% Similarity=0.488 Sum_probs=191.7
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEECCEeCCC--CC
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVE--IS 467 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~ 467 (643)
..|+++|++|+|++ +++|+|+||++++||.++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 46999999999963 469999999999999999999999999999999999996 589999999999864 34
Q ss_pred HHHHhcccEEEccCCCCCcccHHHHhhcCCCC-CC-C----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHH
Q 006489 468 HEHLHRKISIVSQEPVLFNCSIEENIAYGCDG-KA-S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 541 (643)
Q Consensus 468 ~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~-~~-~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 541 (643)
...+|+.|+||+|++.+|..|++|||.++... .. + ++++.++++.+++.+++. +.+......|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHH
Confidence 56788999999999999999999999875210 11 1 344677788888765543 33456678999999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhH
Q 006489 542 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 542 rQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~e 620 (643)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.++.|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998877899999999999875 599999999999999999999
Q ss_pred Hhhc
Q 006489 621 LLSK 624 (643)
Q Consensus 621 L~~~ 624 (643)
+.+.
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 8764
No 144
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-45 Score=377.50 Aligned_cols=214 Identities=30% Similarity=0.460 Sum_probs=190.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4999999999964 3699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCCC---------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCDG---------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~~---------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
+|++|++.++. .|++||+.++... ...++++.++++.+++.+++...| ..||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHH
Confidence 99999987765 4999999875210 112456788899988877666554 47999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHh
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
+||||++.+|+|+||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+.+++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999988753 789999999999985 69999999999999999999986
Q ss_pred h
Q 006489 623 S 623 (643)
Q Consensus 623 ~ 623 (643)
+
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 5
No 145
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-45 Score=377.60 Aligned_cols=215 Identities=33% Similarity=0.545 Sum_probs=188.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC-HHHHhccc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS-HEHLHRKI 475 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~-~~~lr~~i 475 (643)
|+++|++++|++ .+++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+++.|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999964 246999999999999999999999999999999999999999999999999998775 46788899
Q ss_pred EEEccCCC--CCcccHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 476 SIVSQEPV--LFNCSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 476 ~~V~Q~~~--Lf~gTireNI~~~~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
+|++|+|. +++.|++|||.++... ..+ ++++.++++..++.++.... ...||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS-----------PKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------cccCCHHHHHHHHHH
Confidence 99999985 5778999999886320 122 34466777777776655443 368999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 549 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 549 RAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|||+++|+|+||||||++||+.+...+.+.++++. +++|+|++||+++.++.||+|++|++|++++.|+++++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998764 47899999999999999999999999999999999987653
No 146
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-46 Score=376.54 Aligned_cols=219 Identities=32% Similarity=0.512 Sum_probs=187.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCCCC--CH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVEI--SH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~--~~ 468 (643)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999964 3699999999999999999999999999999999999985 799999999998653 34
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
..+|+.++|++|++.+|+.|++||+.++.. ...+. +++.++++.+++.+++. .........|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHHH
Confidence 567889999999999999999999987521 01222 34566777777654321 1223456789999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHh
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
|++|||||+++|+|+||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998877899999999999985 59999999999999999999987
Q ss_pred hc
Q 006489 623 SK 624 (643)
Q Consensus 623 ~~ 624 (643)
+.
T Consensus 242 ~~ 243 (258)
T PRK14268 242 HN 243 (258)
T ss_pred cC
Confidence 53
No 147
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.2e-45 Score=374.63 Aligned_cols=214 Identities=33% Similarity=0.475 Sum_probs=185.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC---------
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS--------- 467 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~--------- 467 (643)
|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999964 36999999999999999999999999999999999999999999999999987653
Q ss_pred ----HHHHhcccEEEccCCCCCc-ccHHHHhhcCCC--CCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 006489 468 ----HEHLHRKISIVSQEPVLFN-CSIEENIAYGCD--GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 536 (643)
Q Consensus 468 ----~~~lr~~i~~V~Q~~~Lf~-gTireNI~~~~~--~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~ 536 (643)
...+|+.++|++|++.+|. .|++||+.++.. ... .++++.++++..++.+.+... ...
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-----------PAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-----------hhh
Confidence 2467889999999999985 899999987421 011 234466777777776655444 368
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEE
Q 006489 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIV 613 (643)
Q Consensus 537 LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Iv 613 (643)
||||||||++|||||+++|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988753 789999999999985 59999999999999
Q ss_pred EEcChhHHhhc
Q 006489 614 ESGTHEELLSK 624 (643)
Q Consensus 614 e~G~~~eL~~~ 624 (643)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999998754
No 148
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-46 Score=393.12 Aligned_cols=213 Identities=31% Similarity=0.497 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 3899999999964 369999999999999999999999999999999999999999999999999987765 35689
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+||+|++.+|. .|++|||.++.. ...+ ++++.++++..++.++....| ..||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999998632 0122 245778888888877665555 579999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++...
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988753 789999999999775 5999999999999999999998764
No 149
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.5e-45 Score=365.82 Aligned_cols=211 Identities=29% Similarity=0.453 Sum_probs=189.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH----HHHh
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH----EHLH 472 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~----~~lr 472 (643)
+.+.|++|+|+.. .++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ...|
T Consensus 1 ~~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (218)
T cd03290 1 VQVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNR 78 (218)
T ss_pred CeeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhc
Confidence 3578999999854 469999999999999999999999999999999999999999999999998876542 3456
Q ss_pred cccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 473 RKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
+.++|++|++.+|+.|++|||.+.. ..++++..++++.+++.+++..+|.|++|.++....+||||||||++||||++
T Consensus 79 ~~i~~~~q~~~~~~~t~~~nl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~ 156 (218)
T cd03290 79 YSVAYAAQKPWLLNATVEENITFGS--PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALY 156 (218)
T ss_pred ceEEEEcCCCccccccHHHHHhhcC--cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHh
Confidence 7899999999999999999999874 34566778899999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHH--HHHHHc-CCCeEEEEccCchhHhhcCeEEEEeCCE
Q 006489 553 MNPRILLLDEATSALDAESEYLVQD--AMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGE 611 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~--~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl~~G~ 611 (643)
++|+++||||||++||+.+...+.+ .++.+. .++|+|++||+.+.++.||+|++|++|.
T Consensus 157 ~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 157 QNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred hCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999998888877 344332 3689999999999999999999999883
No 150
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.4e-45 Score=377.16 Aligned_cols=224 Identities=25% Similarity=0.411 Sum_probs=189.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH---HHh
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE---HLH 472 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~lr 472 (643)
-|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++..++.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999964 4699999999999999999999999999999999999999999999999999877653 357
Q ss_pred cccEEEccCCCCCcc-cHHHHhhcCCC--CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 473 RKISIVSQEPVLFNC-SIEENIAYGCD--GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~g-TireNI~~~~~--~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
++++|++|++.+|+. |++||+.++.. ...+. +++.++++..++.+..... ...||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM-----------PSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHH
Confidence 789999999999986 99999986421 01222 3455667776665543332 357999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHh
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
+|||||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988753 7899999999998865 9999999999999999999988
Q ss_pred hcC-ChHHHHHH
Q 006489 623 SKG-GVYTALVK 633 (643)
Q Consensus 623 ~~~-g~y~~l~~ 633 (643)
++. ..+..++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 643 33455554
No 151
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.8e-45 Score=371.28 Aligned_cols=213 Identities=25% Similarity=0.415 Sum_probs=184.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH-Hhccc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH-LHRKI 475 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~-lr~~i 475 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+... .|+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 799999999964 36999999999999999999999999999999999999999999999999998877654 45679
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCCCC-------------CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHH
Q 006489 476 SIVSQEPVLFNC-SIEENIAYGCDGK-------------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 541 (643)
Q Consensus 476 ~~V~Q~~~Lf~g-TireNI~~~~~~~-------------~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 541 (643)
+|++|++.+|++ |++||+.++.... ..++++.++++..++.+. .......|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE-----------ADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHH
Confidence 999999999986 9999998853200 012345555555555433 334557899999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhH
Q 006489 542 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 542 rQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~e 620 (643)
|||++||||++++|+++|||||||+||+++.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 9999999999999999999999999999999999999998877899999999999986 499999999999999999999
Q ss_pred Hhh
Q 006489 621 LLS 623 (643)
Q Consensus 621 L~~ 623 (643)
+..
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 864
No 152
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-45 Score=371.91 Aligned_cols=214 Identities=31% Similarity=0.487 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCC------CCCHHH
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV------EISHEH 470 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~------~~~~~~ 470 (643)
|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999964 36999999999999999999999999999999999999999999999999873 223467
Q ss_pred HhcccEEEccCCCCCcc-cHHHHhhcCCC--CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 471 LHRKISIVSQEPVLFNC-SIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 471 lr~~i~~V~Q~~~Lf~g-TireNI~~~~~--~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
+|++|+|+||++.+|.+ |++|||.++.. ...+ .+++.++++..++.+++...| ..|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP-----------LHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHH
Confidence 78899999999999974 99999975310 0112 234556666666655554443 589999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
|++||||++++|+++||||||++||+++...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999998875 4799999999999986 4999999999999999999987
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
.+.
T Consensus 229 ~~~ 231 (242)
T PRK11124 229 TQP 231 (242)
T ss_pred cCc
Confidence 654
No 153
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=8.7e-46 Score=355.42 Aligned_cols=178 Identities=37% Similarity=0.684 Sum_probs=167.2
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++|+|++. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5799999999753 34699999999999999999999999999999999999999999999999988776 667889999
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 006489 477 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 556 (643)
Q Consensus 477 ~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~ 556 (643)
|++|++++|+.|++||+ ...||||||||++||||++++|+
T Consensus 79 ~~~q~~~~~~~tv~~~i----------------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL----------------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred EEccCCeeecccHHHhh----------------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998 56899999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEc
Q 006489 557 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 616 (643)
Q Consensus 557 IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G 616 (643)
++||||||++||+++.+.+.+.|+++.+++|+|++||+++.++.||++++|++|++++.|
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999887789999999999999999999999999999765
No 154
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.2e-45 Score=371.87 Aligned_cols=214 Identities=29% Similarity=0.477 Sum_probs=184.3
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCC--CHHHHhcc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI--SHEHLHRK 474 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~--~~~~lr~~ 474 (643)
|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... +..++|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999964 3699999999999999999999999999999999999999999999999999864 34577889
Q ss_pred cEEEccCCCCCc-ccHHHHhhcCCC--CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 475 ISIVSQEPVLFN-CSIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 475 i~~V~Q~~~Lf~-gTireNI~~~~~--~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
++|++|++.+|. .|++||+.++.. ...+ ++++.++++..++.+.... ....||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH-----------YPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-----------ChhhcCHHHHHHHHH
Confidence 999999999886 699999987521 0122 2335566666666544433 346899999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|||++++|+++||||||++||+++...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999998765 4799999999999986 5999999999999999999998754
No 155
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=7.9e-46 Score=366.55 Aligned_cols=204 Identities=31% Similarity=0.562 Sum_probs=177.2
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 579999999974 3699999999999999999999999999999999999999999999999999776543 46899
Q ss_pred EEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
|++|++.+|. .|++||+.++.. ...+ ++++.++++..++.++....| ..||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999985 699999987521 0122 234567777777776655544 5799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEc
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESG 616 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G 616 (643)
++++|+++||||||++||+++.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999998875 37899999999998765 9999999999999876
No 156
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-45 Score=374.22 Aligned_cols=219 Identities=32% Similarity=0.512 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCC--CC---CCCEEEECCEeCCCC--CH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY--DP---IKGKILLNGVPLVEI--SH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~--~p---~~G~I~idg~~i~~~--~~ 468 (643)
-++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|++ +| ++|+|.++|.++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999974 36999999999999999999999999999999999995 36 499999999998653 34
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCC--CC----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCD--GK----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~--~~----~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
..+|+.++||||++.+|+.|++||+.++.. .. ..++++.++++.+++.+.+. +........||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 567889999999999999999999986521 01 11234566777777654433 234556778999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
||++||||++++|+++||||||++||+++...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877799999999999875 5999999999999999999998
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
.+.
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 764
No 157
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-45 Score=376.79 Aligned_cols=219 Identities=31% Similarity=0.493 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEECCEeCCC--CCH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVE--ISH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~~ 468 (643)
.|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999964 369999999999999999999999999999999999864 789999999999865 345
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCC--CC-C---CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCD--GK-A---SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~--~~-~---~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
..++++++|++|++.+|++|++||+.++.. .. . .++.+.++++.+++.+.+. ........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 577889999999999999999999987521 01 1 1234666777777643322 223455778999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
||++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877789999999999875 6999999999999999999998
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
.+.
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 764
No 158
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-46 Score=375.85 Aligned_cols=218 Identities=30% Similarity=0.495 Sum_probs=187.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEECCEeCCCCC--HH
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVEIS--HE 469 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~~~--~~ 469 (643)
-+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+.+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999963 469999999999999999999999999999999999986 47999999999987653 34
Q ss_pred HHhcccEEEccCCCCCcccHHHHhhcCCC-CC------CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 470 HLHRKISIVSQEPVLFNCSIEENIAYGCD-GK------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 470 ~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~------~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
.+|+.++||+|++.+|++|++||+.++.. .+ ..++++.++++..++.+++. +.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 67889999999999999999999987521 01 11334667778777765432 234456778999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
||++||||++++|+|+||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999986 5999999999999999999998
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
.+.
T Consensus 236 ~~~ 238 (251)
T PRK14244 236 FKN 238 (251)
T ss_pred hcC
Confidence 764
No 159
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.5e-45 Score=367.32 Aligned_cols=211 Identities=27% Similarity=0.445 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-|+++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4999999999964 3699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCCCCCcccHHHHhhcCC---CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 476 SIVSQEPVLFNCSIEENIAYGC---DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 476 ~~V~Q~~~Lf~gTireNI~~~~---~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
+|++|++.+|+.|++||+.++. ....+++++.++++..++.+ +........||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999998641 11122344556666666532 2234456789999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhhcCeEEEE-eCCEEEEEcChh
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVV-SDGEIVESGTHE 619 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~aD~Iivl-~~G~Ive~G~~~ 619 (643)
++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.++.||+|++| +++.++++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999988753 78999999999999999999999 467778899995
No 160
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-45 Score=372.51 Aligned_cols=219 Identities=31% Similarity=0.528 Sum_probs=188.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCC-----CCEEEECCEeCCC--CCH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI-----KGKILLNGVPLVE--ISH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~-----~G~I~idg~~i~~--~~~ 468 (643)
.|+++|++|+|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 4899999999964 36999999999999999999999999999999999999987 6999999999865 345
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCC-CCC-C----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-GKA-S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~~-~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
..+|+.++||+|++.+|+.|++||+.++.. ... . ++++.++++..++.+++. ........+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 678999999999999999999999987631 011 1 233555666666654433 334567889999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL 621 (643)
||++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999888668999999999999865 799999999999999999998
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 653
No 161
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-45 Score=367.17 Aligned_cols=207 Identities=34% Similarity=0.521 Sum_probs=179.0
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 397 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
|+++|++++|++.. ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999997421 1479999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-CCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~-~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+||+|++.+|+ .|++||+.++.. ... .++++.++++..++.++....| ..||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999997 799999987521 011 2345778888888877666555 579999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHh-hcCeEEEEe--CCEEEEEcChh
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVS--DGEIVESGTHE 619 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~-~aD~Iivl~--~G~Ive~G~~~ 619 (643)
||+++|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|+ +|+|+++++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999998864 3789999999999774 599999999 79999988753
No 162
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9.7e-46 Score=365.34 Aligned_cols=202 Identities=36% Similarity=0.621 Sum_probs=175.7
Q ss_pred EEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEE
Q 006489 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISI 477 (643)
Q Consensus 398 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 477 (643)
+++|++++|++. ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999752 2469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCC--CCCcccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 478 VSQEP--VLFNCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 478 V~Q~~--~Lf~gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
++|++ .+++.|++||+.++.. ...+ ++++.++++..++.+++... ...||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRS-----------PFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCC-----------cccCCHHHHHHHHHHHH
Confidence 99998 3678999999987521 0122 23456677777776655443 36899999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhHhh-cCeEEEEeCCE
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQS-ADTVAVVSDGE 611 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~VtHrl~~i~~-aD~Iivl~~G~ 611 (643)
|+++|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999988753 7899999999999987 99999999985
No 163
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2.8e-45 Score=371.63 Aligned_cols=214 Identities=32% Similarity=0.472 Sum_probs=182.5
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC--------H
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS--------H 468 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~--------~ 468 (643)
++++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999964 36999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcccEEEccCCCCCc-ccHHHHhhcCCC--CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHH
Q 006489 469 EHLHRKISIVSQEPVLFN-CSIEENIAYGCD--GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 541 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~-gTireNI~~~~~--~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 541 (643)
..+|+.++||||++.+|. .|++||+.++.. ...+. +++.++++..++.+. .......|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChHH
Confidence 567889999999999985 799999976410 01222 234455555554332 334567899999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChh
Q 006489 542 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHE 619 (643)
Q Consensus 542 rQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~ 619 (643)
|||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999988753 7899999999999864 9999999999999999999
Q ss_pred HHhhc
Q 006489 620 ELLSK 624 (643)
Q Consensus 620 eL~~~ 624 (643)
++.+.
T Consensus 230 ~~~~~ 234 (250)
T PRK11264 230 ALFAD 234 (250)
T ss_pred HHhcC
Confidence 98754
No 164
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.5e-45 Score=373.64 Aligned_cols=223 Identities=30% Similarity=0.432 Sum_probs=186.9
Q ss_pred EEEEeEEEECCCC------CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH
Q 006489 397 VELDDVWFAYPSR------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH 470 (643)
Q Consensus 397 I~~~~vsf~Y~~~------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~ 470 (643)
|+++||+|+|++. .+.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 1357999999999999999999999999999999999999999999999999998877543
Q ss_pred ---HhcccEEEccCCC--CC-cccHHHHhhcCCC--CCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 006489 471 ---LHRKISIVSQEPV--LF-NCSIEENIAYGCD--GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 538 (643)
Q Consensus 471 ---lr~~i~~V~Q~~~--Lf-~gTireNI~~~~~--~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LS 538 (643)
+|+.|+|++|++. ++ ..|++|||.+... ... .++++.++++..++.+. ........||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE----------DADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh----------hhhCChhhCC
Confidence 6788999999983 44 4799999965310 011 23456666777666421 1234557899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEE
Q 006489 539 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVES 615 (643)
Q Consensus 539 GGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~ 615 (643)
||||||++||||++++|+++||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999988754 789999999999997 5999999999999999
Q ss_pred cChhHHhhcCChHH
Q 006489 616 GTHEELLSKGGVYT 629 (643)
Q Consensus 616 G~~~eL~~~~g~y~ 629 (643)
|+++++......|.
T Consensus 233 g~~~~~~~~~~~~~ 246 (265)
T TIGR02769 233 CDVAQLLSFKHPAG 246 (265)
T ss_pred CCHHHHcCCCCHHH
Confidence 99999987544443
No 165
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-45 Score=373.34 Aligned_cols=222 Identities=27% Similarity=0.492 Sum_probs=192.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999964 46999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEccCCCCCcc-cHHHHhhcCCCC---------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHH
Q 006489 477 IVSQEPVLFNC-SIEENIAYGCDG---------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 546 (643)
Q Consensus 477 ~V~Q~~~Lf~g-TireNI~~~~~~---------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRia 546 (643)
|++|++.+|.+ |++||+.++... ...++++.++++..++.++.... ...||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----------LTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----------cccCCHHHHHHHH
Confidence 99999999876 999999886210 11234577788888876654433 4689999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 547 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 547 lARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||||++++|+++||||||++||+++...+.+.|+++. +++|+|++||+++.++ .||+|++|++|++++.|+++++...
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 9999999999999999999999999999999998864 4789999999999875 6999999999999999999998653
Q ss_pred CChHHHHHH
Q 006489 625 GGVYTALVK 633 (643)
Q Consensus 625 ~g~y~~l~~ 633 (643)
..+.+.+.
T Consensus 229 -~~~~~~~~ 236 (255)
T PRK11231 229 -GLLRTVFD 236 (255)
T ss_pred -HHHHHHhC
Confidence 34445553
No 166
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-45 Score=376.08 Aligned_cols=214 Identities=31% Similarity=0.508 Sum_probs=184.3
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCC--CCCHHHHhcc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV--EISHEHLHRK 474 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~--~~~~~~lr~~ 474 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999964 36999999999999999999999999999999999999999999999999985 3445678889
Q ss_pred cEEEccCCC--CCcccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 475 ISIVSQEPV--LFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 475 i~~V~Q~~~--Lf~gTireNI~~~~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
|+||+|++. +|..|+.||+.++.. ...+. +++.++++..++.++... ....||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-----------PIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC-----------CchhCCHHHHHHHHH
Confidence 999999986 677899999987411 11222 345667777777655322 346899999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||||+.+|+|+||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998874 4789999999999985 5999999999999999999988654
No 167
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-45 Score=371.75 Aligned_cols=226 Identities=31% Similarity=0.518 Sum_probs=191.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCCCC--CH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVEI--SH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~--~~ 468 (643)
-|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 3899999999964 3699999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCC-CC-----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-GK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~-----~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
..+++.++|++|++.+|+.|++||+.++.. .. ..++++.++++..++.+.+. ........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 567889999999999999999999987521 01 12334667777777765442 234556789999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL 621 (643)
||++||||++++|+|+||||||++||+.+...+.+.|+++.+++|+|+|||+++.+ ..||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999887789999999999976 56999999999999999999998
Q ss_pred hhcC-ChHHHH
Q 006489 622 LSKG-GVYTAL 631 (643)
Q Consensus 622 ~~~~-g~y~~l 631 (643)
.+.. ..|.+.
T Consensus 233 ~~~~~~~~~~~ 243 (250)
T PRK14262 233 VERPKNKLTEE 243 (250)
T ss_pred HhCCCChHHHH
Confidence 7643 334443
No 168
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.7e-45 Score=364.47 Aligned_cols=203 Identities=32% Similarity=0.507 Sum_probs=176.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH---HHHhc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH---EHLHR 473 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~---~~lr~ 473 (643)
|+++|++++|++. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999643 469999999999999999999999999999999999999999999999999987764 34788
Q ss_pred ccEEEccCCCCCc-ccHHHHhhcCCC-CCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 474 KISIVSQEPVLFN-CSIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~-gTireNI~~~~~-~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
.++||+|++.+|. .|++||+.++.. ... .++++.++++.+++.+.....| .+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHH
Confidence 9999999999997 599999987521 011 2345677888888876655544 4799999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCCEE
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEI 612 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G~I 612 (643)
|||++++|+++||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 47999999999999975 899999999974
No 169
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.4e-45 Score=364.92 Aligned_cols=202 Identities=33% Similarity=0.521 Sum_probs=177.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH---HHhc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE---HLHR 473 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~lr~ 473 (643)
|+++|++++|++ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999953 24699999999999999999999999999999999999999999999999999887643 4688
Q ss_pred ccEEEccCCCCCc-ccHHHHhhcCCC-----CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 474 KISIVSQEPVLFN-CSIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~-gTireNI~~~~~-----~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
.++|++|++.+|. .|++||+.++.. ....+++++++++..++.+++...| ..||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999995 699999987521 0122456788888888877666555 4799999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCCE
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGE 611 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G~ 611 (643)
||||+++|+++||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999998864 47999999999999875 99999999985
No 170
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.5e-45 Score=380.94 Aligned_cols=214 Identities=28% Similarity=0.475 Sum_probs=184.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.|+...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999964 46999999999999999999999999999999999999999999999999997754 4578999
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+||||++.+|. .|++||+.+... ...+. +++.++++.+++.+ ..++.+ .+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-------KADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------HhcCch----hhCCHHHHHHHHHHH
Confidence 99999999985 799999986421 11232 23445555555543 344444 479999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHhhc
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.++. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999875 47899999999999864 999999999999999999999754
No 171
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-45 Score=370.81 Aligned_cols=205 Identities=33% Similarity=0.443 Sum_probs=181.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 4999999999964 36999999999999999999999999999999999999999999999998763 467889
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 554 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~ 554 (643)
+|++|++.+|+ .|++||+.++.. ...++++.++++..++.++... ...+||||||||++|||||+++
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK-GQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc-chHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999997 699999988632 2235677888888888765443 3468999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhH
Q 006489 555 PRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 555 p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~e 620 (643)
|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+.++
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDL 220 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccccc
Confidence 99999999999999999999999998764 3789999999999875 599999999999999988653
No 172
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3.3e-45 Score=372.38 Aligned_cols=217 Identities=33% Similarity=0.473 Sum_probs=186.6
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCC--------
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI-------- 466 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~-------- 466 (643)
+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999974 3699999999999999999999999999999999999999999999999988642
Q ss_pred -----CHHHHhcccEEEccCCCCCc-ccHHHHhhcCCC--CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCC
Q 006489 467 -----SHEHLHRKISIVSQEPVLFN-CSIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERG 534 (643)
Q Consensus 467 -----~~~~lr~~i~~V~Q~~~Lf~-gTireNI~~~~~--~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G 534 (643)
....+|+.++||||++.+|+ .|++||+.++.. ...+ ++++.++++..++.+... ....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCc
Confidence 13567889999999999997 599999986410 0112 334666777777655431 2345
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCCEE
Q 006489 535 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEI 612 (643)
Q Consensus 535 ~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G~I 612 (643)
..||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 7899999999999999999999999999999999999999999998875 48999999999999985 999999999999
Q ss_pred EEEcChhHHhhc
Q 006489 613 VESGTHEELLSK 624 (643)
Q Consensus 613 ve~G~~~eL~~~ 624 (643)
++.|+++++.+.
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999998754
No 173
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.4e-45 Score=369.10 Aligned_cols=212 Identities=28% Similarity=0.452 Sum_probs=180.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH-Hhccc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH-LHRKI 475 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~-lr~~i 475 (643)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 579999999974 36999999999999999999999999999999999999999999999999998887654 46789
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCCC-CCCH-HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 476 SIVSQEPVLFNC-SIEENIAYGCDG-KASS-ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 476 ~~V~Q~~~Lf~g-TireNI~~~~~~-~~~~-~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
+|++|++.+|+. |++||+.++... ..++ +...++++..+ +++.........||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 999999876321 1121 22233333332 1222334456789999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHH
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL 621 (643)
++|+++||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999988754 7899999999999975 999999999999999999987
No 174
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-45 Score=378.12 Aligned_cols=219 Identities=29% Similarity=0.494 Sum_probs=182.4
Q ss_pred CcEEEEeEEEECCCCC--CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCC----C-C
Q 006489 395 GEVELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE----I-S 467 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~----~-~ 467 (643)
+.|+++|++++|++.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999997531 1359999999999999999999999999999999999999999999999999852 2 4
Q ss_pred HHHHhcccEEEccCC--CCCcccHHHHhhcCCC-CCCCHHH----HHHHHHHcCchHHHHcCCCcccccccCCCCCCCHH
Q 006489 468 HEHLHRKISIVSQEP--VLFNCSIEENIAYGCD-GKASSAD----IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 540 (643)
Q Consensus 468 ~~~lr~~i~~V~Q~~--~Lf~gTireNI~~~~~-~~~~~~~----i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 540 (643)
...+|+.|+|++|+| .+|+.|++|||.++.. ...+.++ +.++++..++ |.++ .......||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~---~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PEDY---VKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------ChhH---hcCChhhCCHH
Confidence 567888999999998 4788899999987631 0122322 3344444443 2221 23456789999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcC
Q 006489 541 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGT 617 (643)
Q Consensus 541 QrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~ 617 (643)
||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988753 78999999999987 4699999999999999999
Q ss_pred hhHHhh
Q 006489 618 HEELLS 623 (643)
Q Consensus 618 ~~eL~~ 623 (643)
++++.+
T Consensus 235 ~~~~~~ 240 (289)
T PRK13645 235 PFEIFS 240 (289)
T ss_pred HHHHhc
Confidence 988754
No 175
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-45 Score=372.91 Aligned_cols=220 Identities=31% Similarity=0.520 Sum_probs=189.2
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEECCEeCCC--CC
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVE--IS 467 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~ 467 (643)
..|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999964 369999999999999999999999999999999999987 689999999999863 56
Q ss_pred HHHHhcccEEEccCCCCCcccHHHHhhcCCCC-CCC---HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 468 HEHLHRKISIVSQEPVLFNCSIEENIAYGCDG-KAS---SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 468 ~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~-~~~---~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
...+|+.++||+|++.+|..|++||+.++... ... ++++.++++.+++.+.+ +.........|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 77888999999999999999999999886320 111 34466677777664332 22344556789999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhH-hhcCeEEEEeC-----------CE
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSD-----------GE 611 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i-~~aD~Iivl~~-----------G~ 611 (643)
|++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+ ..||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 9999999999999999999999999999999999999887789999999999987 56999999996 67
Q ss_pred EEEEcChhHHhhc
Q 006489 612 IVESGTHEELLSK 624 (643)
Q Consensus 612 Ive~G~~~eL~~~ 624 (643)
|++.|+.+++.+.
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999998764
No 176
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-45 Score=371.01 Aligned_cols=218 Identities=32% Similarity=0.509 Sum_probs=188.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCC-CCCHH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLV-EISHE 469 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~-~~~~~ 469 (643)
.++++|++++|++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4899999999974 4699999999999999999999999999999999999986 5999999999986 45667
Q ss_pred HHhcccEEEccCCCCCcccHHHHhhcCCC-CCCC-----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 470 HLHRKISIVSQEPVLFNCSIEENIAYGCD-GKAS-----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 470 ~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~~~-----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
.+|+.++|++|++.+|+.|++||+.++.. .... ++++.++++.+++.+++. ..+......|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 88899999999999999999999987521 0111 234556677777765442 2334556789999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHh
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
|++||||++.+|+++||||||++||+++...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999775 9999999999999999999886
Q ss_pred h
Q 006489 623 S 623 (643)
Q Consensus 623 ~ 623 (643)
+
T Consensus 233 ~ 233 (249)
T PRK14253 233 S 233 (249)
T ss_pred c
Confidence 4
No 177
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-45 Score=377.22 Aligned_cols=218 Identities=28% Similarity=0.481 Sum_probs=184.3
Q ss_pred EEEEeEEEECCCCC--CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCC----CHHH
Q 006489 397 VELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI----SHEH 470 (643)
Q Consensus 397 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~----~~~~ 470 (643)
|+++|++|+|++.. ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997531 13699999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcccEEEccCC--CCCcccHHHHhhcCCC-CCCCHHH----HHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 471 LHRKISIVSQEP--VLFNCSIEENIAYGCD-GKASSAD----IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 471 lr~~i~~V~Q~~--~Lf~gTireNI~~~~~-~~~~~~~----i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
+|+.|+|++|++ .+|+.|++|||.++.. ...+.++ +.++++..++.+. ........|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHHH
Confidence 888999999998 6889999999987521 1123332 3455555555421 123445789999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
|++|||||+++|++|||||||++||+++.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998875 3789999999999885 5999999999999999999988
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 653
No 178
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-45 Score=388.85 Aligned_cols=201 Identities=35% Similarity=0.605 Sum_probs=178.8
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH----hcccEEEccCCCCCc-c
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL----HRKISIVSQEPVLFN-C 487 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l----r~~i~~V~Q~~~Lf~-g 487 (643)
++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||.++.+++...+ |++++||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998887654 468999999999996 5
Q ss_pred cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEec
Q 006489 488 SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDE 562 (643)
Q Consensus 488 TireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE 562 (643)
|++|||.++.. ...+ ++++.++++.+++.++....| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999987521 0112 345778899999988777666 4799999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 563 ATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 563 ~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|||+||+.+.+.+++.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++.+.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999998864 4789999999999875 6999999999999999999998764
No 179
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-45 Score=370.66 Aligned_cols=220 Identities=29% Similarity=0.528 Sum_probs=189.2
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC--C---CCCEEEECCEeCCCC--C
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD--P---IKGKILLNGVPLVEI--S 467 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~--p---~~G~I~idg~~i~~~--~ 467 (643)
+.|+++|++++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++ | ++|+|.+||.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 46999999999974 369999999999999999999999999999999999986 4 689999999998653 4
Q ss_pred HHHHhcccEEEccCCCCCc-ccHHHHhhcCCC--CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHH
Q 006489 468 HEHLHRKISIVSQEPVLFN-CSIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 540 (643)
Q Consensus 468 ~~~lr~~i~~V~Q~~~Lf~-gTireNI~~~~~--~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 540 (643)
...+|+.|+|+||++.+|. .|++||+.++.. ...+ ++++.++++.+++.+++.. .......+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 5578899999999999997 699999986421 0111 2446777888887655432 223456789999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChh
Q 006489 541 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHE 619 (643)
Q Consensus 541 QrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~ 619 (643)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999877899999999999985 59999999999999999999
Q ss_pred HHhhc
Q 006489 620 ELLSK 624 (643)
Q Consensus 620 eL~~~ 624 (643)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14256 233 KIFTT 237 (252)
T ss_pred HHHhC
Confidence 98754
No 180
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-45 Score=373.77 Aligned_cols=219 Identities=29% Similarity=0.461 Sum_probs=187.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEECCEeCCC--CCH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVE--ISH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~~ 468 (643)
-++++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999974 369999999999999999999999999999999999987 699999999999853 455
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCC-CCCCH-----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-GKASS-----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~~~~-----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
..++++++|++|++.+|..|++||+.++.. ...++ +.+.++++..++.+. +..........||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDE-------LKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcch-------HHHHHhcCcccCCHHHH
Confidence 678889999999999999999999987521 11221 223445555544322 22334566789999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
||++|||||+++|+|+||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999976 5999999999999999999998
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
.+.
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 764
No 181
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-45 Score=370.48 Aligned_cols=219 Identities=32% Similarity=0.476 Sum_probs=188.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCCCC--CH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVEI--SH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~--~~ 468 (643)
.|+++|++|+|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999964 3699999999999999999999999999999999999753 489999999999876 45
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCCC-CC-C----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCDG-KA-S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~-~~-~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
...|+.++|++|++.+|+.|++|||.++... .. + ++++.++++.+++.+++ .+........||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHHHH
Confidence 6778899999999999999999999886210 11 1 23455666666664433 2345667889999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+.+++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999986 5999999999999999999998
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14261 236 FEN 238 (253)
T ss_pred HhC
Confidence 754
No 182
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-45 Score=369.92 Aligned_cols=214 Identities=32% Similarity=0.484 Sum_probs=188.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999974 36999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCC-CcccHHHHhhcCCCCC-C----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVL-FNCSIEENIAYGCDGK-A----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~L-f~gTireNI~~~~~~~-~----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
|++|++.+ ++.|++||+.++.... . .++++.++++..++.++.... ...||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD-----------YPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCC-----------cccCCHHHHHHHHHHHH
Confidence 99999988 6789999998863211 1 234567788888876654443 46899999999999999
Q ss_pred Hc------cCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 551 LM------MNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 551 l~------~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
|+ .+|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999998875 4789999999999886 6999999999999999999998
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
.+.
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 753
No 183
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.7e-45 Score=364.81 Aligned_cols=209 Identities=28% Similarity=0.435 Sum_probs=181.7
Q ss_pred cEEEEeEEEECCCCCC-CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---H
Q 006489 396 EVELDDVWFAYPSRPN-HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH---L 471 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---l 471 (643)
.|+++|++++|++... .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999975311 35999999999999999999999999999999999999999999999999998887653 2
Q ss_pred -hcccEEEccCCCCCcc-cHHHHhhcCC-----CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHH
Q 006489 472 -HRKISIVSQEPVLFNC-SIEENIAYGC-----DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 472 -r~~i~~V~Q~~~Lf~g-TireNI~~~~-----~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
++.++|++|++.+|.. |++||+.++. +.+...+++.++++..++.+++...| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3679999999999874 9999997641 10112346778888888877766655 4799999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhhcCeEEEEeCCEEEEE
Q 006489 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVES 615 (643)
Q Consensus 545 ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~ 615 (643)
++|||||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+|++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988743 7899999999999999999999999999864
No 184
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=371.38 Aligned_cols=219 Identities=28% Similarity=0.481 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCCCCC-HH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVEIS-HE 469 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~~-~~ 469 (643)
.++++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 4899999999974 4699999999999999999999999999999999999986 6999999999998764 45
Q ss_pred HHhcccEEEccCCCCCcccHHHHhhcCCC--CCCCHHHH----HHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 470 HLHRKISIVSQEPVLFNCSIEENIAYGCD--GKASSADI----ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 470 ~lr~~i~~V~Q~~~Lf~gTireNI~~~~~--~~~~~~~i----~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
.+|++++|++|++.+|+.|++|||.++.. ...+++++ .++++.+++.++ +++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA-------VKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhCCcccCCHHHHH
Confidence 67889999999999999999999987521 11344443 344555555432 233455667899999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHh
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
|++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998877799999999999875 59999999999999999999997
Q ss_pred hc
Q 006489 623 SK 624 (643)
Q Consensus 623 ~~ 624 (643)
+.
T Consensus 251 ~~ 252 (276)
T PRK14271 251 SS 252 (276)
T ss_pred hC
Confidence 65
No 185
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-45 Score=361.00 Aligned_cols=202 Identities=35% Similarity=0.530 Sum_probs=178.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++. . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5799999999642 2 39999999999999999999999999999999999999999999999987654 357899
Q ss_pred EEccCCCCCcc-cHHHHhhcCCCCC-----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFNC-SIEENIAYGCDGK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~Lf~g-TireNI~~~~~~~-----~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
|++|++.+|.+ |++||+.++.... .+++++.++++.+++.++....| ..||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 9999998753211 23456888999999988777666 3799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEc
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESG 616 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G 616 (643)
++++|+++||||||++||+++...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999998875 37899999999999865 9999999999998764
No 186
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-45 Score=369.86 Aligned_cols=219 Identities=32% Similarity=0.496 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCCCC--CH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVEI--SH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~--~~ 468 (643)
.|+++|++++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4899999999964 3699999999999999999999999999999999999875 799999999999653 34
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCC-CCC-C----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-GKA-S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~~-~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
..+|+.++|+||++.+|+.|++||+.++.. ... + ++++.++++.+++.+.+.. ........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 567889999999999999999999987521 011 1 2346678888877554432 23345678999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL 621 (643)
||++||||++++|+|+|||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998764 999999999999999999998
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 754
No 187
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.1e-45 Score=363.42 Aligned_cols=199 Identities=33% Similarity=0.536 Sum_probs=172.2
Q ss_pred EEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEE
Q 006489 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISI 477 (643)
Q Consensus 398 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 477 (643)
+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. .+|+.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 46899999964 36999999999999999999999999999999999999999999999998764 46789999
Q ss_pred EccCCCC---CcccHHHHhhcCCCCC---------CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 478 VSQEPVL---FNCSIEENIAYGCDGK---------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 478 V~Q~~~L---f~gTireNI~~~~~~~---------~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
++|++.+ |+.|++||+.++.... ..++++.++++..++.++.... ..+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHH
Confidence 9999987 6689999998753210 1234577888888887765543 357999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEc
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESG 616 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G 616 (643)
+|||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++| |++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999998865 57899999999999864 8999999986 66554
No 188
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-45 Score=386.61 Aligned_cols=214 Identities=30% Similarity=0.537 Sum_probs=188.3
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+.++ .++.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999964 368999999999999999999999999999999999999999999999999987664 5678
Q ss_pred cEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 475 ISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 475 i~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
|+||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++.+..| ..||||||||++||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHH
Confidence 999999999996 599999998732 1222 245677888888877666655 47899999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 549 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 549 RAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|||+++|++||||||||+||+.+...+.+.|+++. .+.|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.++
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999998887664 378999999999986 56999999999999999999999865
No 189
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-45 Score=374.76 Aligned_cols=218 Identities=29% Similarity=0.480 Sum_probs=184.6
Q ss_pred cEEEEeEEEECCCCC--CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCC----CHH
Q 006489 396 EVELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI----SHE 469 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~----~~~ 469 (643)
.|+++|++++|++.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997421 14699999999999999999999999999999999999999999999999998753 345
Q ss_pred HHhcccEEEccCC--CCCcccHHHHhhcCCC-CCCCH----HHHHHHHHHcCch-HHHHcCCCcccccccCCCCCCCHHH
Q 006489 470 HLHRKISIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSGGQ 541 (643)
Q Consensus 470 ~lr~~i~~V~Q~~--~Lf~gTireNI~~~~~-~~~~~----~~i~~al~~a~l~-~~i~~lp~G~~T~vge~G~~LSGGQ 541 (643)
..++.|+|++|+| .+|+.|++|||.++.. ...+. +++.++++.+++. ++. ......|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-----------SKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-----------hCCcccCCHHH
Confidence 6788999999998 5888999999987521 12222 2355666666664 332 23356899999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChh
Q 006489 542 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHE 619 (643)
Q Consensus 542 rQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~ 619 (643)
|||++|||||+.+|+++||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998874 4789999999999875 69999999999999999999
Q ss_pred HHhhc
Q 006489 620 ELLSK 624 (643)
Q Consensus 620 eL~~~ 624 (643)
++.+.
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 87653
No 190
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-45 Score=361.05 Aligned_cols=215 Identities=34% Similarity=0.553 Sum_probs=187.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 474 (643)
.|+++|++..|+.. ++++||||+|+.||.+|+.||||||||||+++|+|+..|++|.|.+||..+.+.+. ..-.++
T Consensus 2 ~i~i~~~~~~~~~~---~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGAF---GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhcccc---cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 47899999999753 68999999999999999999999999999999999999999999999994433332 344457
Q ss_pred cEEEccCCCCC-cccHHHHhhcCCC------C-CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHH
Q 006489 475 ISIVSQEPVLF-NCSIEENIAYGCD------G-KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 546 (643)
Q Consensus 475 i~~V~Q~~~Lf-~gTireNI~~~~~------~-~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRia 546 (643)
||+|.|+.-|| ..||+|||.||-. . ...+.++.+.++.|+|...=+.-| ..||||||||+|
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHH
Confidence 99999999998 6899999999952 1 123556888899999988766666 678999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhh
Q 006489 547 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 547 lARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
|||||..+|++|+||||++|||++-.+.+.+-|++.. -+.|+++|||+.+.+ +.||+|+||++|+|.+.|+++|...
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 9999999999999999999999999988888887654 278999999999865 7799999999999999999999976
Q ss_pred c
Q 006489 624 K 624 (643)
Q Consensus 624 ~ 624 (643)
.
T Consensus 228 ~ 228 (345)
T COG1118 228 H 228 (345)
T ss_pred C
Confidence 4
No 191
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=3.9e-45 Score=349.17 Aligned_cols=172 Identities=42% Similarity=0.701 Sum_probs=163.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++. ..++++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5799999999753 346999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 006489 477 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 556 (643)
Q Consensus 477 ~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~ 556 (643)
|++|++.+|+.|++||+ ||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~tv~~~l-------------------------------------------LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 80 YLPQDDELFSGSIAENI-------------------------------------------LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred EECCCCccccCcHHHHC-------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998 99999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEEEeCCEE
Q 006489 557 ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEI 612 (643)
Q Consensus 557 IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl~~G~I 612 (643)
++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+|++|++|++
T Consensus 117 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999999998875 47899999999999999999999999974
No 192
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-45 Score=366.42 Aligned_cols=218 Identities=27% Similarity=0.417 Sum_probs=180.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH-Hhcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH-LHRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~-lr~~ 474 (643)
-|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... +++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999964 36999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred cEEEccCCCCCcc-cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc
Q 006489 475 ISIVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 553 (643)
Q Consensus 475 i~~V~Q~~~Lf~g-TireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~ 553 (643)
++|++|++.+|++ |++||+.++.. ..+.++..+.++ +.++.++...++ .......||||||||++||||+++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~-----~~l~~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~~ 154 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGF-FAERDQFQERIK-----WVYELFPRLHER-RIQRAGTMSGGEQQMLAIGRALMS 154 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhh-ccChhHHHHHHH-----HHHHHHHHHHHH-HhCchhhCCHHHHHHHHHHHHHHh
Confidence 9999999999984 99999988532 122222222111 112222111111 223457899999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhh
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
+|+|+||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++.+
T Consensus 155 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999998864 489999999999865 5699999999999999999999864
No 193
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=5.3e-45 Score=370.66 Aligned_cols=213 Identities=29% Similarity=0.464 Sum_probs=187.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999964 36999999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEccCCCC-CcccHHHHhhcCCCC-------C--CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHH
Q 006489 477 IVSQEPVL-FNCSIEENIAYGCDG-------K--ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 546 (643)
Q Consensus 477 ~V~Q~~~L-f~gTireNI~~~~~~-------~--~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRia 546 (643)
|++|++.+ +..|++||+.++... . .+++++.++++.+++.+.... ....||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHH
Confidence 99999864 568999999876310 0 112356777777777654333 34689999999999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhh
Q 006489 547 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 547 lARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
||||++.+|+++||||||++||+++...+.+.|+++.+ ++|+|++||+++.+ +.||+|++|++|+|++.|+++++.+
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999999999999988753 78999999999999 5699999999999999999999765
No 194
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-45 Score=373.42 Aligned_cols=220 Identities=30% Similarity=0.520 Sum_probs=189.4
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEECCEeCCC--CC
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVE--IS 467 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~ 467 (643)
..|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35999999999964 369999999999999999999999999999999999997 689999999999864 35
Q ss_pred HHHHhcccEEEccCCCCCcccHHHHhhcCCC----CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 468 HEHLHRKISIVSQEPVLFNCSIEENIAYGCD----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 468 ~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~----~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
...+|++++||+|++.+|..|++||+.++.. ....+++++++++..++.+.+.. .+......|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHH
Confidence 5678899999999999999999999987421 01124567788888877544432 234556789999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEE-EEeCCEEEEEcChhHH
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVA-VVSDGEIVESGTHEEL 621 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Ii-vl~~G~Ive~G~~~eL 621 (643)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999865 99975 5799999999999998
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
.+.
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 754
No 195
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-45 Score=379.09 Aligned_cols=226 Identities=32% Similarity=0.441 Sum_probs=188.8
Q ss_pred cEEEEeEEEECCCCC-------CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH
Q 006489 396 EVELDDVWFAYPSRP-------NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~-------~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~ 468 (643)
-|+++|++++|+... ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997321 2468999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHhcccEEEccCCC--CCc-ccHHHHhhcC---C---CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 006489 469 E---HLHRKISIVSQEPV--LFN-CSIEENIAYG---C---DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 536 (643)
Q Consensus 469 ~---~lr~~i~~V~Q~~~--Lf~-gTireNI~~~---~---~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~ 536 (643)
. .+|++|+||+|+|. |+. -|+.+|+... . ......+++.++++.+++.+. .++. ....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~----~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE------HYDR----YPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH------HhcC----CCcc
Confidence 4 56889999999994 554 5999998531 0 101123457788888888532 2222 2367
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEE
Q 006489 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIV 613 (643)
Q Consensus 537 LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Iv 613 (643)
||||||||++|||||+.+|++||+||||++||..+.+.|.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988753 789999999999997 59999999999999
Q ss_pred EEcChhHHhhc-CChHHHH
Q 006489 614 ESGTHEELLSK-GGVYTAL 631 (643)
Q Consensus 614 e~G~~~eL~~~-~g~y~~l 631 (643)
|.|+.+++.++ ...|.+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EECCHHHHhcCCCCHHHHH
Confidence 99999999875 3456543
No 196
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-45 Score=373.50 Aligned_cols=215 Identities=36% Similarity=0.559 Sum_probs=185.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCC--CCHHHHhcc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE--ISHEHLHRK 474 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~--~~~~~lr~~ 474 (643)
|+++|++++|++ ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999973 2469999999999999999999999999999999999999999999999999853 334568899
Q ss_pred cEEEccCC--CCCcccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 475 ISIVSQEP--VLFNCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 475 i~~V~Q~~--~Lf~gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
|+|++|++ .+|+.|++|||.++.. ...+ .+++.++++.+++.++.... ...|||||+||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP-----------PHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC-----------hhhCCHHHHHHHHH
Confidence 99999998 5788999999987521 0122 23466777777776543332 35799999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|||++.+|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999875 3789999999999986 5999999999999999999998753
No 197
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-45 Score=366.72 Aligned_cols=212 Identities=35% Similarity=0.559 Sum_probs=188.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++|+|++ .++++|+||+|++|++++|+|+||||||||+++|+|+++|.+|+|.++|.++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 579999999974 369999999999999999999999999999999999999999999999999987664 367899
Q ss_pred EEccCCCCCcc-cHHHHhhcCCC-C----CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFNC-SIEENIAYGCD-G----KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~Lf~g-TireNI~~~~~-~----~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
|++|++.+|.+ |++||+.++.. . ...++++.++++..++.+++...| ..||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 99999986521 0 112456778888888888777666 5899999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.++ .||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999988754 799999999999985 5999999999999999999998764
No 198
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-45 Score=370.94 Aligned_cols=219 Identities=31% Similarity=0.499 Sum_probs=189.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEECCEeCC--CCCH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLV--EISH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~--~~~~ 468 (643)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++. ..+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999964 369999999999999999999999999999999999986 47999999999985 3456
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCCC-CC---CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCDG-KA---SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~-~~---~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
..+|++|+|++|++.+|+.|++||+.++... .. .++++.++++.+++.+++.. .......+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 6788999999999999999999999876320 11 13456677788887665532 2345677899999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhH-hhcCeEEEEe---------CCEEEE
Q 006489 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVS---------DGEIVE 614 (643)
Q Consensus 545 ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i-~~aD~Iivl~---------~G~Ive 614 (643)
++|||||+++|+|+||||||++||+.+...+.+.|+++.+++|+|+|||+++.+ ..||+|++|+ +|+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 999999999999999999999999999999999999887788999999999987 5689999998 899999
Q ss_pred EcChhHHhhc
Q 006489 615 SGTHEELLSK 624 (643)
Q Consensus 615 ~G~~~eL~~~ 624 (643)
.|+++|+.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999764
No 199
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-45 Score=369.90 Aligned_cols=214 Identities=24% Similarity=0.408 Sum_probs=182.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH-hcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~ 474 (643)
-|+++|++++|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999964 469999999999999999999999999999999999999999999999999988876554 456
Q ss_pred cEEEccCCCCCcc-cHHHHhhcCCCC--------------CCC------HHHHHHHHHHcCchHHHHcCCCcccccccCC
Q 006489 475 ISIVSQEPVLFNC-SIEENIAYGCDG--------------KAS------SADIENAAKMANAHDFISNFPEKYQTFVGER 533 (643)
Q Consensus 475 i~~V~Q~~~Lf~g-TireNI~~~~~~--------------~~~------~~~i~~al~~a~l~~~i~~lp~G~~T~vge~ 533 (643)
++|++|++.+|.. |++|||.++... ... .+++.++++..+ ++......
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVG-----------LLEHANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCC-----------hhhhhhCC
Confidence 9999999999985 999999975210 000 012333333433 44444556
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhh-cCeEEEEeCC
Q 006489 534 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDG 610 (643)
Q Consensus 534 G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~-aD~Iivl~~G 610 (643)
..+||||||||++||||++.+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 678999999999999999999999999999999999999999999988753 7899999999999855 9999999999
Q ss_pred EEEEEcChhHHhh
Q 006489 611 EIVESGTHEELLS 623 (643)
Q Consensus 611 ~Ive~G~~~eL~~ 623 (643)
++++.|+++++.+
T Consensus 231 ~i~~~~~~~~~~~ 243 (255)
T PRK11300 231 TPLANGTPEEIRN 243 (255)
T ss_pred eEEecCCHHHHhh
Confidence 9999999998765
No 200
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=9.9e-45 Score=370.53 Aligned_cols=231 Identities=24% Similarity=0.411 Sum_probs=192.6
Q ss_pred cEEEEeEEEECCCC------CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH
Q 006489 396 EVELDDVWFAYPSR------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE 469 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~ 469 (643)
-|+++||+++|+.. ...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999631 124699999999999999999999999999999999999999999999999999766666
Q ss_pred HHhcccEEEccCCC--CCc-ccHHHHhhcCCC--CCCC----HHHHHHHHHHcCch-HHHHcCCCcccccccCCCCCCCH
Q 006489 470 HLHRKISIVSQEPV--LFN-CSIEENIAYGCD--GKAS----SADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSG 539 (643)
Q Consensus 470 ~lr~~i~~V~Q~~~--Lf~-gTireNI~~~~~--~~~~----~~~i~~al~~a~l~-~~i~~lp~G~~T~vge~G~~LSG 539 (643)
.+++.++|+||++. +++ -|+.+|+.+... ...+ ++++.++++.+++. +.... ....|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY-----------YPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhc-----------CchhcCH
Confidence 67788999999985 444 489999865311 0111 34577888888884 33322 2357999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhh-cCeEEEEeCCEEEEEc
Q 006489 540 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESG 616 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G 616 (643)
|||||++||||++++|+|+||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998753 7899999999999986 9999999999999999
Q ss_pred ChhHHhhc--CChHHHHHHHHhc
Q 006489 617 THEELLSK--GGVYTALVKRQLQ 637 (643)
Q Consensus 617 ~~~eL~~~--~g~y~~l~~~q~~ 637 (643)
+++++.+. ...+++++..+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~ 255 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGHFG 255 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhccC
Confidence 99999865 3456677765543
No 201
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=7.4e-45 Score=365.17 Aligned_cols=211 Identities=34% Similarity=0.532 Sum_probs=184.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++|+|++ +++|+|+||++.+||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 579999999974 369999999999999999999999999999999999999999999999999986653 477899
Q ss_pred EEccCCCCCcc-cHHHHhhcCCCC-CC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFNC-SIEENIAYGCDG-KA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~Lf~g-TireNI~~~~~~-~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
|+||++.+|++ |++||+.++... .. .++++.++++..++.++.... ..+|||||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999975 999999875320 11 134456677777776555443 36899999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHhh
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
++++|+++||||||++||+++++.+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999999988654 7999999999998755 99999999999999999999875
No 202
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-44 Score=362.53 Aligned_cols=211 Identities=35% Similarity=0.529 Sum_probs=186.2
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++||+++|++. + .|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL---P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECCc---c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 7899999999642 2 399999999999999999999999999999999999999999999998876543 56899
Q ss_pred EEccCCCCCcc-cHHHHhhcCCCCC-----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFNC-SIEENIAYGCDGK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~Lf~g-TireNI~~~~~~~-----~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
|++|++.+|.+ |++|||.++.... .+++++.++++..++.+.+...| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999985 9999998752101 22456888999999988877777 3799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhcC
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKG 625 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~~ 625 (643)
++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 9999999999999999999999999999988753 789999999999986 49999999999999999999987653
No 203
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=6.4e-45 Score=378.42 Aligned_cols=214 Identities=28% Similarity=0.440 Sum_probs=182.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999998764 35678899
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-CCCCHH----HHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCD-GKASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~-~~~~~~----~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+|+||++.+|. .|++||+.+... ...+.+ ++.++++.+++.+. .++. ...||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-------~~~~----~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-------ADVR----VALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-------hcCc----hhhCCHHHHHHHHHHH
Confidence 99999999985 799999975311 112332 34445555555433 3333 3579999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||+++|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999998874 4789999999999986 5999999999999999999998754
No 204
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=370.05 Aligned_cols=215 Identities=25% Similarity=0.425 Sum_probs=190.0
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
..|+++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 35999999999974 369999999999999999999999999999999999999999999999999998888888889
Q ss_pred cEEEccCCCCCc-ccHHHHhhcCCCC---------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHH
Q 006489 475 ISIVSQEPVLFN-CSIEENIAYGCDG---------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 475 i~~V~Q~~~Lf~-gTireNI~~~~~~---------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
|+|++|++.+|. .|++||+.++... +..+++++++++..++.++... ....||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHH
Confidence 999999999874 7999999875210 0123457788888888765443 347899999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHH
Q 006489 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 545 ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL 621 (643)
++||||++++|+++||||||++||+++...+.+.|+++.+ ++|+|++||+++.+ +.||+|++|++|+|++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 78999999999977 45999999999999999999998
Q ss_pred hh
Q 006489 622 LS 623 (643)
Q Consensus 622 ~~ 623 (643)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 65
No 205
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-45 Score=370.74 Aligned_cols=219 Identities=32% Similarity=0.528 Sum_probs=189.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCCC--CCH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVE--ISH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~~~ 468 (643)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 5999999999964 3699999999999999999999999999999999999985 48999999999864 455
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCC--CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~--~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
..++++|+|++|++.+|+.|++||+.++.. ...+ ++.+.++++.+++.+++.. ........||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 678889999999999999999999987521 0111 2346678888888665432 23455678999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEe-----CCEEEEEc
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVS-----DGEIVESG 616 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~-----~G~Ive~G 616 (643)
||++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 999999999999999999999999999999999999998877899999999999985 599999997 59999999
Q ss_pred ChhHHhhc
Q 006489 617 THEELLSK 624 (643)
Q Consensus 617 ~~~eL~~~ 624 (643)
+++++.+.
T Consensus 237 ~~~~~~~~ 244 (259)
T PRK14260 237 VTTQIFSN 244 (259)
T ss_pred CHHHHhcC
Confidence 99998754
No 206
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=8.4e-45 Score=361.41 Aligned_cols=204 Identities=30% Similarity=0.460 Sum_probs=176.3
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---Hhc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH---LHR 473 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---lr~ 473 (643)
|+++|++++|++ ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999953 246999999999999999999999999999999999999999999999999998876543 688
Q ss_pred ccEEEccCCCCC-cccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 474 KISIVSQEPVLF-NCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 474 ~i~~V~Q~~~Lf-~gTireNI~~~~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
.++|++|++.+| +.|++||+.++.. ...++ +++.++++..++.++.... ...||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-----------PIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------chhCCHHHHHHHHH
Confidence 999999999874 6899999987521 01222 2456677777776655443 36899999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCCEEE
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIV 613 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Iv 613 (643)
|||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999999998874 47899999999999875 8999999999986
No 207
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=368.63 Aligned_cols=228 Identities=26% Similarity=0.398 Sum_probs=192.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEECCEeCCCC-----C
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI---KGKILLNGVPLVEI-----S 467 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~-----~ 467 (643)
-|+++||+++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999964 36999999999999999999999999999999999999986 49999999998654 3
Q ss_pred HHHHhcccEEEccCCCCCc-ccHHHHhhcCCCC-------------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCC
Q 006489 468 HEHLHRKISIVSQEPVLFN-CSIEENIAYGCDG-------------KASSADIENAAKMANAHDFISNFPEKYQTFVGER 533 (643)
Q Consensus 468 ~~~lr~~i~~V~Q~~~Lf~-gTireNI~~~~~~-------------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~ 533 (643)
...+++.++|+||++.+|. .|++||+.++... +..++++.++++..++.+.+.. .
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------R 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------C
Confidence 4567889999999999987 5999999875310 0113456777777777655443 3
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCC
Q 006489 534 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDG 610 (643)
Q Consensus 534 G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G 610 (643)
...||||||||++||||++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 467999999999999999999999999999999999999999999998753 78999999999975 569999999999
Q ss_pred EEEEEcChhHHhhcCChHHHHHHHHhcCC
Q 006489 611 EIVESGTHEELLSKGGVYTALVKRQLQEP 639 (643)
Q Consensus 611 ~Ive~G~~~eL~~~~g~y~~l~~~q~~~~ 639 (643)
+|++.|+++++ ......+++.....+.
T Consensus 230 ~i~~~g~~~~~--~~~~~~~~~~~~~~~~ 256 (262)
T PRK09984 230 HVFYDGSSQQF--DNERFDHLYRSINRVE 256 (262)
T ss_pred EEEEeCCHHHh--ccHHHHHHHhhhhccc
Confidence 99999999996 3345667776655443
No 208
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.4e-44 Score=361.45 Aligned_cols=210 Identities=35% Similarity=0.510 Sum_probs=174.3
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH---HHHh
Q 006489 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH---EHLH 472 (643)
Q Consensus 397 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~---~~lr 472 (643)
|+++||+++|++.. ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 1269999999999999999999999999999999999999999999999999988774 5788
Q ss_pred cccEEEccCC--CCC-cccHHHHhhcCCC---CCCCHHHH----HHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 473 RKISIVSQEP--VLF-NCSIEENIAYGCD---GKASSADI----ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 473 ~~i~~V~Q~~--~Lf-~gTireNI~~~~~---~~~~~~~i----~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
++++|++|++ .++ ..|++||+.++.. ....+++. .++++..++. +........+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----------EEVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----------hhHhhCCchhcCHHHH
Confidence 8999999999 344 5799999976411 01112211 1334444432 1233445578999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEc
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 616 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G 616 (643)
||++|||||+++|+++||||||++||+++...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999988754 789999999999987 69999999999998765
No 209
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-45 Score=369.62 Aligned_cols=219 Identities=31% Similarity=0.518 Sum_probs=186.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCCC--CCH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVE--ISH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~~~ 468 (643)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999974 3699999999999999999999999999999999999974 69999999999853 456
Q ss_pred HHHhcccEEEccCCCCCc-ccHHHHhhcCCC--CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHH
Q 006489 469 EHLHRKISIVSQEPVLFN-CSIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 541 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~-gTireNI~~~~~--~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 541 (643)
..+|+.++|++|++.+|. .|++||+.++.. ...+ ++++.++++..++.+++. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 678899999999999997 699999986421 0111 234566777777754332 22344567899999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEe------CCEEEE
Q 006489 542 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVS------DGEIVE 614 (643)
Q Consensus 542 rQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~------~G~Ive 614 (643)
|||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999998877799999999999875 699999996 899999
Q ss_pred EcChhHHhhc
Q 006489 615 SGTHEELLSK 624 (643)
Q Consensus 615 ~G~~~eL~~~ 624 (643)
.|+++++...
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999998753
No 210
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=367.35 Aligned_cols=219 Identities=31% Similarity=0.521 Sum_probs=189.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEECCEeCCCC--CH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVEI--SH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~~--~~ 468 (643)
.++++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3889999999964 369999999999999999999999999999999999864 4899999999998753 45
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCC-CC-CC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-GK-AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~-~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
..+|+.++|+||++.+|+.|++||+.++.. .. .+ ++++.++++.+++.+++..+ +......||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 678899999999999999999999987521 01 12 24467788888887765432 3455779999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL 621 (643)
||++||||++++|+|+||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 899999999999999999998
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
...
T Consensus 233 ~~~ 235 (250)
T PRK14266 233 FIN 235 (250)
T ss_pred HhC
Confidence 754
No 211
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.2e-44 Score=382.48 Aligned_cols=208 Identities=27% Similarity=0.467 Sum_probs=180.0
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCE----eCCCCCHHHHh----cccEEEccCCC
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGV----PLVEISHEHLH----RKISIVSQEPV 483 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~----~i~~~~~~~lr----~~i~~V~Q~~~ 483 (643)
..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. ++...+...+| ++|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35799999999999999999999999999999999999999999999996 67777765543 58999999999
Q ss_pred CCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 006489 484 LFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRI 557 (643)
Q Consensus 484 Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~I 557 (643)
+|+ .|++||+.++.. ...+ ++++.++++..++.++....| .+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 799999998631 0122 245678888888877765544 46999999999999999999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhc-CChHHH
Q 006489 558 LLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK-GGVYTA 630 (643)
Q Consensus 558 liLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~-~g~y~~ 630 (643)
||||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+++|++.+ ...|.+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence 999999999999999999999988754 78999999999986 66999999999999999999999864 344543
No 212
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=369.59 Aligned_cols=220 Identities=34% Similarity=0.489 Sum_probs=190.8
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCC----
Q 006489 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLV---- 464 (643)
Q Consensus 394 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~---- 464 (643)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.+||.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 456999999999974 3699999999999999999999999999999999999875 7999999998874
Q ss_pred CCCHHHHhcccEEEccCCCCCcccHHHHhhcCCC-CC-----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 006489 465 EISHEHLHRKISIVSQEPVLFNCSIEENIAYGCD-GK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 538 (643)
Q Consensus 465 ~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~-----~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LS 538 (643)
..+...+++.|+|++|++.+|.+|++|||.++.. .. ..++++.++++.+++.+++. +.+......||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 3345678899999999999999999999987521 01 12456777888777654333 34456678999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcC
Q 006489 539 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 617 (643)
Q Consensus 539 GGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~ 617 (643)
||||||++||||++++|+++||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998877889999999999985 599999999999999999
Q ss_pred hhHHhh
Q 006489 618 HEELLS 623 (643)
Q Consensus 618 ~~eL~~ 623 (643)
++++..
T Consensus 244 ~~~~~~ 249 (265)
T PRK14252 244 TDTIFI 249 (265)
T ss_pred HHHHHh
Confidence 999875
No 213
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=5.6e-45 Score=360.52 Aligned_cols=202 Identities=36% Similarity=0.546 Sum_probs=173.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCC--CCHHHHhcc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE--ISHEHLHRK 474 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~--~~~~~lr~~ 474 (643)
|+++|++++|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 578999999974 369999999999999999999999999999999999999999999999999853 455678899
Q ss_pred cEEEccCCCCCc-ccHHHHhhcCCC--CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 475 ISIVSQEPVLFN-CSIEENIAYGCD--GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 475 i~~V~Q~~~Lf~-gTireNI~~~~~--~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
++|++|++.+|. .|++||+.++.. ...+. +++.++++..++.+.+... ..+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAY-----------PAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC-----------ccccCHHHHHHHHH
Confidence 999999999986 699999987521 12222 3455666666665554443 36899999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEE
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEI 612 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~I 612 (643)
|||++++|+++||||||++||+++.+.+.+.|+++. .++|+|++||+++.+. .||+|++|++|+|
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999875 4789999999999986 5999999999975
No 214
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-45 Score=366.15 Aligned_cols=215 Identities=26% Similarity=0.420 Sum_probs=182.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH-Hhcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH-LHRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~-lr~~ 474 (643)
.|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|.|+++|++|+|.++|.++...+... +|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3899999999964 36999999999999999999999999999999999999999999999999998887644 5788
Q ss_pred cEEEccCCCCCc-ccHHHHhhcCCC--CCCCHH----HHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 475 ISIVSQEPVLFN-CSIEENIAYGCD--GKASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 475 i~~V~Q~~~Lf~-gTireNI~~~~~--~~~~~~----~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
++|++|++.+|. .|++||+.++.. ...+.+ ++.++++..+ ++.........||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFH-----------IEHLRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcC-----------CHHHhhcchhhCCHHHHHHHHH
Confidence 999999999997 599999987521 012222 2333333333 3334455667899999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|||++++|++|||||||++||+.+.+.+.+.++++. .++|+|++||+++.+ +.||+|++|++|++++.|+++++++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 999999999999999999999999999999988764 478999999999766 56999999999999999999998753
No 215
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-44 Score=371.23 Aligned_cols=220 Identities=31% Similarity=0.473 Sum_probs=186.8
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEECCEeCCCC--C
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVEI--S 467 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~~--~ 467 (643)
..|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999964 359999999999999999999999999999999999864 4999999999998653 3
Q ss_pred HHHHhcccEEEccCCCCCcccHHHHhhcCCC-CCC-C----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHH
Q 006489 468 HEHLHRKISIVSQEPVLFNCSIEENIAYGCD-GKA-S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 541 (643)
Q Consensus 468 ~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~~-~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 541 (643)
...+|+.++||+|++.+|+.|++|||.++.. ... + ++++.++++..++.+.+.. ........|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD-------RLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh-------HhhCChhhCCHHH
Confidence 3467889999999999999999999987521 011 1 2345566777666433221 2234567899999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhH
Q 006489 542 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 542 rQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~e 620 (643)
|||++|||||+++|+++||||||++||+++...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998877789999999999985 599999999999999999999
Q ss_pred Hhhc
Q 006489 621 LLSK 624 (643)
Q Consensus 621 L~~~ 624 (643)
+.+.
T Consensus 268 ~~~~ 271 (286)
T PRK14275 268 LFTN 271 (286)
T ss_pred HHhC
Confidence 8764
No 216
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-45 Score=358.43 Aligned_cols=202 Identities=26% Similarity=0.444 Sum_probs=173.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ +++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.. .+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999963 369999999999999999999999999999999999999999999999988753 5678999
Q ss_pred EEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
|++|++.+|. .|++||+.+... ...+ ++++.++++..++.+... ....+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHH
Confidence 9999999987 499999987521 0111 334556666666655433 3456899999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEc
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 616 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G 616 (643)
++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999998764 4789999999999885 59999999999998764
No 217
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=366.43 Aligned_cols=219 Identities=32% Similarity=0.521 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCC-----CCEEEECCEeCCC--CCH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI-----KGKILLNGVPLVE--ISH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~-----~G~I~idg~~i~~--~~~ 468 (643)
-++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999963 46999999999999999999999999999999999999874 8999999999875 345
Q ss_pred HHHhcccEEEccCCCCCc-ccHHHHhhcCCC-CCC-CHHH----HHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHH
Q 006489 469 EHLHRKISIVSQEPVLFN-CSIEENIAYGCD-GKA-SSAD----IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 541 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~-gTireNI~~~~~-~~~-~~~~----i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 541 (643)
..+|+.|+|++|++.+|. .|++||+.++.. ... .+++ +.+.++..++.+.+ ++..+ ....+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~----~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLK----TPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhc----CCcccCCHHH
Confidence 677889999999999998 599999986521 011 2332 23334444443322 22333 3357899999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhH
Q 006489 542 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 542 rQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~e 620 (643)
|||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999875 99999999999999999999
Q ss_pred Hhhc
Q 006489 621 LLSK 624 (643)
Q Consensus 621 L~~~ 624 (643)
+.+.
T Consensus 234 ~~~~ 237 (252)
T PRK14272 234 LFTN 237 (252)
T ss_pred HHhC
Confidence 8764
No 218
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.6e-44 Score=374.80 Aligned_cols=213 Identities=22% Similarity=0.424 Sum_probs=186.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+.++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 799999999963 469999999999999999999999999999999999999999999999999977 4567889999
Q ss_pred EEccCCCCCcc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~Lf~g-TireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
|+||++.+|.. |++||+.+... ...+ .+++.++++..++.+.. .....+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHH
Confidence 99999999975 99999976421 0122 34466666666665543 33356899999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHhhc
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|+++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998778999999999998865 999999999999999999998664
No 219
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-44 Score=374.34 Aligned_cols=220 Identities=31% Similarity=0.517 Sum_probs=189.5
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEECCEeCCCC--C
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVEI--S 467 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~~--~ 467 (643)
..|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35999999999974 369999999999999999999999999999999999986 6899999999998653 4
Q ss_pred HHHHhcccEEEccCCCCCcccHHHHhhcCCCC------------------CCCHHHHHHHHHHcCchHHHHcCCCccccc
Q 006489 468 HEHLHRKISIVSQEPVLFNCSIEENIAYGCDG------------------KASSADIENAAKMANAHDFISNFPEKYQTF 529 (643)
Q Consensus 468 ~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~------------------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ 529 (643)
...+|+.|+|++|++.+|+.|++||+.++... ...++++.++++.+++.++ +++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE-------VNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh-------hhHH
Confidence 56788899999999999999999999875210 0113446667777666443 3345
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeE-EEE
Q 006489 530 VGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTV-AVV 607 (643)
Q Consensus 530 vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~I-ivl 607 (643)
+.....+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 5677889999999999999999999999999999999999999999999999877899999999999976 59997 578
Q ss_pred eCCEEEEEcChhHHhhc
Q 006489 608 SDGEIVESGTHEELLSK 624 (643)
Q Consensus 608 ~~G~Ive~G~~~eL~~~ 624 (643)
++|+|++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999998753
No 220
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-44 Score=376.36 Aligned_cols=228 Identities=25% Similarity=0.373 Sum_probs=186.6
Q ss_pred EEEEeEEEECCCCCC-CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC----CCCCEEEECCEeCCCCCHHHH
Q 006489 397 VELDDVWFAYPSRPN-HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD----PIKGKILLNGVPLVEISHEHL 471 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~----p~~G~I~idg~~i~~~~~~~l 471 (643)
++++|++++|+.... ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999975311 359999999999999999999999999999999999997 489999999999999987765
Q ss_pred hc----ccEEEccCCC--CCc-ccHHHHh----hcCC--CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 006489 472 HR----KISIVSQEPV--LFN-CSIEENI----AYGC--DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 538 (643)
Q Consensus 472 r~----~i~~V~Q~~~--Lf~-gTireNI----~~~~--~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LS 538 (643)
++ .|+||+|+|. ++. -|+.+|+ .... ..+..++++.++++.+++.+... .+......||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPAS--------RLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhCCchhCC
Confidence 43 6999999995 332 3565554 3321 10112345778888888864211 1234457899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEE
Q 006489 539 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVES 615 (643)
Q Consensus 539 GGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~ 615 (643)
||||||++|||||+.+|+++|+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ +.||+|+||++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988753 78999999999998 56999999999999999
Q ss_pred cChhHHhhc-CChHHHHH
Q 006489 616 GTHEELLSK-GGVYTALV 632 (643)
Q Consensus 616 G~~~eL~~~-~g~y~~l~ 632 (643)
|+++++.++ ...|.+.+
T Consensus 236 g~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQAL 253 (326)
T ss_pred CCHHHHhhCCCChHHHHH
Confidence 999999865 44565433
No 221
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.3e-44 Score=365.38 Aligned_cols=214 Identities=26% Similarity=0.407 Sum_probs=178.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcC--CCCCCCEEEECCEeCCCCCHHHH-hc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF--YDPIKGKILLNGVPLVEISHEHL-HR 473 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~--~~p~~G~I~idg~~i~~~~~~~l-r~ 473 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++..++.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999964 3699999999999999999999999999999999999 47999999999999988887665 45
Q ss_pred ccEEEccCCCCCcc-cHHHHhhcCCC--C------CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHH
Q 006489 474 KISIVSQEPVLFNC-SIEENIAYGCD--G------KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 540 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~g-TireNI~~~~~--~------~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 540 (643)
.++||+|++.+|++ |++||+.+... . ..+ ++++.++++..++.+.. .+..++ ..||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G 148 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGG 148 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHH
Confidence 59999999999875 89999976411 0 011 23455666666654221 111111 249999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh--cCeEEEEeCCEEEEEcC
Q 006489 541 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS--ADTVAVVSDGEIVESGT 617 (643)
Q Consensus 541 QrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~--aD~Iivl~~G~Ive~G~ 617 (643)
||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999998875 47899999999999976 79999999999999999
Q ss_pred hhHHh
Q 006489 618 HEELL 622 (643)
Q Consensus 618 ~~eL~ 622 (643)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 98654
No 222
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-44 Score=367.02 Aligned_cols=219 Identities=30% Similarity=0.424 Sum_probs=191.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCCCC--CH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVEI--SH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~--~~ 468 (643)
.+.+++.+++|.+ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+. +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999964 3699999999999999999999999999999999999986 799999999998653 44
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCCC----CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCDG----KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~----~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
..+|+.|+|++|++.+|+.|++|||.++... +..++++.++++.+++.+.+.. ...+...+|||||+||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 5678899999999999999999999876310 1123567888999888766543 2345678999999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEe--------CCEEEEE
Q 006489 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVS--------DGEIVES 615 (643)
Q Consensus 545 ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~--------~G~Ive~ 615 (643)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|+ +|+|++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 9999999999999999999999999999999999998877889999999999875 599999996 8999999
Q ss_pred cChhHHhhc
Q 006489 616 GTHEELLSK 624 (643)
Q Consensus 616 G~~~eL~~~ 624 (643)
|+++++.+.
T Consensus 238 g~~~~~~~~ 246 (261)
T PRK14263 238 GPTAQIFQN 246 (261)
T ss_pred CCHHHHHhC
Confidence 999998764
No 223
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.2e-44 Score=376.87 Aligned_cols=228 Identities=24% Similarity=0.396 Sum_probs=187.0
Q ss_pred cEEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEECCEeCCCCCHHHH
Q 006489 396 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI---KGKILLNGVPLVEISHEHL 471 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~~~~~l 471 (643)
-++++|++++|+... ...+++|+||+|++||++||||+||||||||+++|+|+++|. +|+|.+||.++..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996421 246999999999999999999999999999999999999996 9999999999999987765
Q ss_pred h----cccEEEccCC--CCCc-ccHHHHhhcCC--CCCCCHH----HHHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 006489 472 H----RKISIVSQEP--VLFN-CSIEENIAYGC--DGKASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 538 (643)
Q Consensus 472 r----~~i~~V~Q~~--~Lf~-gTireNI~~~~--~~~~~~~----~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LS 538 (643)
+ +.|+||+|+| .++. -|+.+|+.... ....+.+ ++.++++.+++ |++.+ .++.....||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChHH-HhcCCcccCC
Confidence 3 4799999998 4543 57877774321 0122332 34445555444 43332 2456678999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEE
Q 006489 539 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVES 615 (643)
Q Consensus 539 GGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~ 615 (643)
||||||++|||||+.+|+++|+|||||+||+.+...|.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988754 789999999999986 5999999999999999
Q ss_pred cChhHHhhc-CChHHHH
Q 006489 616 GTHEELLSK-GGVYTAL 631 (643)
Q Consensus 616 G~~~eL~~~-~g~y~~l 631 (643)
|+++++.+. ...|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 999999874 4456553
No 224
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.7e-44 Score=355.32 Aligned_cols=203 Identities=36% Similarity=0.568 Sum_probs=178.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
++++|++++|+. .++|+||++++|+.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ .+++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999962 467999999999999999999999999999999999999999999999987654 4678899
Q ss_pred EEccCCCCCc-ccHHHHhhcCC-CC----CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFN-CSIEENIAYGC-DG----KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~Lf~-gTireNI~~~~-~~----~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
||+|+|.+|. .|++||+.++. +. ..+++++.++++..++.+.....|. +||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc-----------cCCHHHHHHHHHHHH
Confidence 9999999997 49999997641 10 1234567889999999887777664 799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcC
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 617 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~ 617 (643)
++++|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999988753 789999999999876 599999999999999874
No 225
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-44 Score=380.55 Aligned_cols=210 Identities=31% Similarity=0.497 Sum_probs=186.2
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCC----CHHHHh
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI----SHEHLH 472 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~----~~~~lr 472 (643)
|++ |++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +....+
T Consensus 2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 999999642 23 89999999999999999999999999999999999999999999998653 244568
Q ss_pred cccEEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH
Q 006489 473 RKISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 551 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~-gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl 551 (643)
++++||+|++.+|+ .|++|||.++.. ..+++++.++++..++.++....| .+||||||||++|||||
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL 143 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMA-KSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRAL 143 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhh-hhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 89999999999996 699999998754 445677889999998877766655 57999999999999999
Q ss_pred ccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 552 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 552 ~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
+++|+++|||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++.++
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 999999999999999999999999999988754 689999999999775 5999999999999999999999865
No 226
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-44 Score=360.68 Aligned_cols=211 Identities=36% Similarity=0.598 Sum_probs=185.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999963 27999999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEccCCCCCc-ccHHHHhhcCCC-CCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFN-CSIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~Lf~-gTireNI~~~~~-~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
|++|++.+|. .|++||+.++.. ... .++++.++++.+++.+++...| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHH
Confidence 9999999995 799999987531 111 2345677888888877766554 5799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHhhc
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
++++|++++|||||++||+.+.+.+.+.++++.. ++|+|++||++..++. ||+|++|++|++++.|+++++.+.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999988653 7999999999999875 999999999999999999998764
No 227
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-44 Score=366.13 Aligned_cols=213 Identities=31% Similarity=0.441 Sum_probs=185.5
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCC--------CCEEEECCEeCCCCCH
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI--------KGKILLNGVPLVEISH 468 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~--------~G~I~idg~~i~~~~~ 468 (643)
|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999964 36999999999999999999999999999999999999998 9999999999998888
Q ss_pred HHHhcccEEEccCCC-CCcccHHHHhhcCCCCC------C---CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 006489 469 EHLHRKISIVSQEPV-LFNCSIEENIAYGCDGK------A---SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 538 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~-Lf~gTireNI~~~~~~~------~---~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LS 538 (643)
..+++.++|++|++. +|+.|++||+.++.... . ++++++++++..++.+ .+......||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-----------LVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-----------hhcCCcccCC
Confidence 888889999999986 57899999998753100 1 1234556666666543 3444567899
Q ss_pred HHHHHHHHHHHHHc---------cCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEE
Q 006489 539 GGQKQRVAIARALM---------MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAV 606 (643)
Q Consensus 539 GGQrQRialARAl~---------~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iiv 606 (643)
||||||++|||||+ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999988754 789999999999985 6999999
Q ss_pred EeCCEEEEEcChhHHhh
Q 006489 607 VSDGEIVESGTHEELLS 623 (643)
Q Consensus 607 l~~G~Ive~G~~~eL~~ 623 (643)
|++|+|++.|+++++.+
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999865
No 228
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-44 Score=365.82 Aligned_cols=220 Identities=30% Similarity=0.533 Sum_probs=189.4
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCC-----CCEEEECCEeCCC--CC
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI-----KGKILLNGVPLVE--IS 467 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~-----~G~I~idg~~i~~--~~ 467 (643)
+.|+++|++|+|++ ..+|+|+||++++|+.++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 36999999999964 36999999999999999999999999999999999999985 8999999999853 34
Q ss_pred HHHHhcccEEEccCCCCCcccHHHHhhcCCC-----CCCC-HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHH
Q 006489 468 HEHLHRKISIVSQEPVLFNCSIEENIAYGCD-----GKAS-SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 541 (643)
Q Consensus 468 ~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-----~~~~-~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 541 (643)
...+|+.++|++|++.+|..|++||+.++.. ...+ ++++.++++.+++.+++.. ........|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 5678899999999999999999999986421 0111 2446778888887665542 2345678999999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHh-hcCeEEEEeC-----CEEE
Q 006489 542 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSD-----GEIV 613 (643)
Q Consensus 542 rQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~-~aD~Iivl~~-----G~Iv 613 (643)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998753 4899999999999885 5999999999 9999
Q ss_pred EEcChhHHhhc
Q 006489 614 ESGTHEELLSK 624 (643)
Q Consensus 614 e~G~~~eL~~~ 624 (643)
+.|+++++...
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999998754
No 229
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-44 Score=364.96 Aligned_cols=219 Identities=32% Similarity=0.505 Sum_probs=186.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC--C---CCCEEEECCEeCCC--CCH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD--P---IKGKILLNGVPLVE--ISH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~--p---~~G~I~idg~~i~~--~~~ 468 (643)
-|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999974 369999999999999999999999999999999999875 4 59999999999864 345
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCC-CCC-C----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-GKA-S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~-~~~-~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
..+++.++|++|++.+|+.|++||+.++.. ... . ++++.++++.+++.+.+. .........||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 567889999999999999999999987521 011 1 234556667666643332 233455679999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
||++||||++++|+++||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+..++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877789999999999986 5999999999999999999988
Q ss_pred hhc
Q 006489 622 LSK 624 (643)
Q Consensus 622 ~~~ 624 (643)
...
T Consensus 235 ~~~ 237 (252)
T PRK14255 235 FLN 237 (252)
T ss_pred hcC
Confidence 754
No 230
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.9e-44 Score=376.73 Aligned_cols=214 Identities=31% Similarity=0.488 Sum_probs=183.4
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-|+++|++++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999974 36999999999999999999999999999999999999999999999999997654 5678899
Q ss_pred EEEccCCCCC-cccHHHHhhcCCC-CCCCHH----HHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLF-NCSIEENIAYGCD-GKASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf-~gTireNI~~~~~-~~~~~~----~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+|+||++.+| ..|++||+.+... ...+.+ ++.++++.+++ ++..++.+ .+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~~~~~----~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADARV----SDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chhhCCCh----hhCCHHHHHHHHHHH
Confidence 9999999987 5799999986421 112222 23344554444 33444444 479999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||+++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||+|++|++|+|++.|+.+++.+.
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999998875 4799999999999985 5999999999999999999998754
No 231
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-44 Score=361.56 Aligned_cols=226 Identities=29% Similarity=0.479 Sum_probs=190.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECC------EeCCCCCHH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG------VPLVEISHE 469 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg------~~i~~~~~~ 469 (643)
.|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++..++..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5999999999964 3699999999999999999999999999999999999999996666554 677777777
Q ss_pred HHhcccEEEccCCCCCcc-cHHHHhhcCCCC-CC-CH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 470 HLHRKISIVSQEPVLFNC-SIEENIAYGCDG-KA-SS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 470 ~lr~~i~~V~Q~~~Lf~g-TireNI~~~~~~-~~-~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
.+|+.++|++|++.+|.+ |++|||.++... .. ++ +++.++++..++.+++. .........||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHH
Confidence 889999999999999975 999999875320 11 22 23566777777755431 123445678999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL 621 (643)
||++||||++++|+++||||||++||+.+++.+.+.|.++.+++|+|+|||+++.+ ..||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999887789999999999998 56999999999999999999998
Q ss_pred hhc-CChHHHH
Q 006489 622 LSK-GGVYTAL 631 (643)
Q Consensus 622 ~~~-~g~y~~l 631 (643)
.+. ...|.+.
T Consensus 240 ~~~~~~~~~~~ 250 (257)
T PRK14246 240 FTSPKNELTEK 250 (257)
T ss_pred HhCCCcHHHHH
Confidence 865 3345443
No 232
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-44 Score=373.82 Aligned_cols=225 Identities=24% Similarity=0.373 Sum_probs=188.5
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC----CCCCEEEECCEeCCCCCHHHH
Q 006489 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD----PIKGKILLNGVPLVEISHEHL 471 (643)
Q Consensus 397 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~----p~~G~I~idg~~i~~~~~~~l 471 (643)
|+++|++++|+... ...+++||||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||+++.+++.+.+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 79999999996421 2469999999999999999999999999999999999986 589999999999998887665
Q ss_pred h----cccEEEccCCCC--C-cccHHHHhhcCC----C-C----C--CCHHHHHHHHHHcCchHH---HHcCCCcccccc
Q 006489 472 H----RKISIVSQEPVL--F-NCSIEENIAYGC----D-G----K--ASSADIENAAKMANAHDF---ISNFPEKYQTFV 530 (643)
Q Consensus 472 r----~~i~~V~Q~~~L--f-~gTireNI~~~~----~-~----~--~~~~~i~~al~~a~l~~~---i~~lp~G~~T~v 530 (643)
+ +.|+||+|+|.. + .-||.+|+.... . . + ..++++.++++.+++.+. ....|
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p------- 156 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP------- 156 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc-------
Confidence 3 479999999973 3 368999986420 0 0 0 113467788888888642 33333
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEE
Q 006489 531 GERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVV 607 (643)
Q Consensus 531 ge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl 607 (643)
..||||||||++|||||+.+|+|+|||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|
T Consensus 157 ----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm 232 (330)
T PRK15093 157 ----YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL 232 (330)
T ss_pred ----hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 68999999999999999999999999999999999999999999998754 789999999999995 59999999
Q ss_pred eCCEEEEEcChhHHhhc-CChHHHHH
Q 006489 608 SDGEIVESGTHEELLSK-GGVYTALV 632 (643)
Q Consensus 608 ~~G~Ive~G~~~eL~~~-~g~y~~l~ 632 (643)
++|+|+|.|+.+++.+. ...|.+.+
T Consensus 233 ~~G~ive~g~~~~i~~~p~~~y~~~l 258 (330)
T PRK15093 233 YCGQTVETAPSKELVTTPHHPYTQAL 258 (330)
T ss_pred ECCEEEEECCHHHHHhCCCCHHHHHH
Confidence 99999999999998764 45676533
No 233
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-44 Score=364.76 Aligned_cols=219 Identities=32% Similarity=0.490 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCCC--CCH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVE--ISH 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~~~ 468 (643)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 5999999999974 3699999999999999999999999999999999999863 59999999999864 345
Q ss_pred HHHhcccEEEccCCCCCcccHHHHhhcCCCC-C---CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHH
Q 006489 469 EHLHRKISIVSQEPVLFNCSIEENIAYGCDG-K---ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 469 ~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~-~---~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
..+|+.|+|++|++.+|+.|++|||.++... . ..++++.++++.+++.+++.. ........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHH
Confidence 5678999999999999999999999876310 1 123456677888887655432 2345567899999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEe---------CCEEEE
Q 006489 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVS---------DGEIVE 614 (643)
Q Consensus 545 ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~---------~G~Ive 614 (643)
++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999998877899999999999885 699999997 899999
Q ss_pred EcChhHHhhc
Q 006489 615 SGTHEELLSK 624 (643)
Q Consensus 615 ~G~~~eL~~~ 624 (643)
.|+.+|+.+.
T Consensus 250 ~g~~~~~~~~ 259 (274)
T PRK14265 250 FSPTEQMFGS 259 (274)
T ss_pred eCCHHHHHhC
Confidence 9999998754
No 234
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=4.3e-44 Score=365.83 Aligned_cols=226 Identities=30% Similarity=0.451 Sum_probs=187.4
Q ss_pred EEEEeEEEECCCC------CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH--
Q 006489 397 VELDDVWFAYPSR------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-- 468 (643)
Q Consensus 397 I~~~~vsf~Y~~~------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-- 468 (643)
|+++||+|+|+.. .++++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8999999999731 03579999999999999999999999999999999999999999999999999988765
Q ss_pred -HHHhcccEEEccCCC--CC-cccHHHHhhcCCC--CCCCH----HHHHHHHHHcCchHHHHcCCCcccc-cccCCCCCC
Q 006489 469 -EHLHRKISIVSQEPV--LF-NCSIEENIAYGCD--GKASS----ADIENAAKMANAHDFISNFPEKYQT-FVGERGVRL 537 (643)
Q Consensus 469 -~~lr~~i~~V~Q~~~--Lf-~gTireNI~~~~~--~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T-~vge~G~~L 537 (643)
..+|+.++|++|++. ++ ..|++||+.+... ...+. +++.++++..+ +++ ........|
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~L 152 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVD-----------LDDSVLDKRPPQL 152 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcC-----------CChhHhhCCCccC
Confidence 346889999999983 43 4799999865311 01121 23444444443 432 234556789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEE
Q 006489 538 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVE 614 (643)
Q Consensus 538 SGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive 614 (643)
|||||||++|||||+++|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.++ .||+|++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999988753 789999999999997 599999999999999
Q ss_pred EcChhHHhhcCChHHHHHH
Q 006489 615 SGTHEELLSKGGVYTALVK 633 (643)
Q Consensus 615 ~G~~~eL~~~~g~y~~l~~ 633 (643)
.|+++++...+..|..-+.
T Consensus 233 ~g~~~~~~~~~~~~~~~~~ 251 (268)
T PRK10419 233 TQPVGDKLTFSSPAGRVLQ 251 (268)
T ss_pred eCChhhccCCCCHHHHHHH
Confidence 9999999877666654443
No 235
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=7.1e-44 Score=362.80 Aligned_cols=227 Identities=27% Similarity=0.431 Sum_probs=183.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEe-----CCCCCHHH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVP-----LVEISHEH 470 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~-----i~~~~~~~ 470 (643)
-|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999974 369999999999999999999999999999999999999999999999998 87776554
Q ss_pred ----HhcccEEEccCCC--CC-cccHHHHhhcCCC--CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHH
Q 006489 471 ----LHRKISIVSQEPV--LF-NCSIEENIAYGCD--GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 541 (643)
Q Consensus 471 ----lr~~i~~V~Q~~~--Lf-~gTireNI~~~~~--~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 541 (643)
+++.++||+|++. ++ ..|+.|||.+... ...+..+..+ .++++++.++-+ ++.+......|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3667999999984 33 3588999864210 0111112111 123344444321 134556778999999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcCh
Q 006489 542 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTH 618 (643)
Q Consensus 542 rQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~ 618 (643)
|||++|||||+++|+|+||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999987653 789999999999997 5999999999999999999
Q ss_pred hHHhhc-CChHHHH
Q 006489 619 EELLSK-GGVYTAL 631 (643)
Q Consensus 619 ~eL~~~-~g~y~~l 631 (643)
+++..+ ...|.+.
T Consensus 237 ~~~~~~~~~~~~~~ 250 (258)
T PRK11701 237 DQVLDDPQHPYTQL 250 (258)
T ss_pred HHHhcCCCCHHHHH
Confidence 998754 3345443
No 236
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=3.7e-44 Score=372.47 Aligned_cols=201 Identities=25% Similarity=0.428 Sum_probs=175.1
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcc-cHH
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC-SIE 490 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-Tir 490 (643)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++|+|+||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999876 446678899999999999975 999
Q ss_pred HHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccC
Q 006489 491 ENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS 565 (643)
Q Consensus 491 eNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TS 565 (643)
||+.+... ...+ ++++.++++.+++.+.... ....||||||||++|||||+++|+++||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR-----------PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCC-----------chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99987421 0122 3356777777777654332 236799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 566 ALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 566 aLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
+||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|+|++.|+++++.+.
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999998874 4789999999999986 5999999999999999999998754
No 237
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=7.3e-44 Score=354.10 Aligned_cols=205 Identities=31% Similarity=0.480 Sum_probs=179.5
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH---HHh
Q 006489 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE---HLH 472 (643)
Q Consensus 397 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~lr 472 (643)
++++|+++.|++.. +.++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999997421 25699999999999999999999999999999999999999999999999999877643 468
Q ss_pred cccEEEccCCCCCc-ccHHHHhhcCCCC--CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 473 RKISIVSQEPVLFN-CSIEENIAYGCDG--KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~-gTireNI~~~~~~--~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
+.++|++|++.+|. .|+.||+.++... ..+ ++++.++++.+++.+++...| .+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999997 7999999875310 122 234677778888877766665 47999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhhcCeEEEEeCCEE
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEI 612 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~aD~Iivl~~G~I 612 (643)
+||||++++|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999988763 7999999999998889999999999986
No 238
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-43 Score=359.54 Aligned_cols=203 Identities=33% Similarity=0.458 Sum_probs=175.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999964 3699999999999999999999999999999999999999999999999998653 24689
Q ss_pred EEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
|++|++.+|. .|++||+.++.. ...+ ++++.++++..++.+.... ...+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999999987 699999987521 0122 2346677777777655443 346899999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHh-hcCeEEEEe--CCEEEEEcCh
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVS--DGEIVESGTH 618 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~-~aD~Iivl~--~G~Ive~G~~ 618 (643)
|+++|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|+ +|+|++.++.
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999998863 3799999999999875 599999998 5999999865
No 239
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.9e-43 Score=357.41 Aligned_cols=227 Identities=30% Similarity=0.452 Sum_probs=188.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC----CCCEEEECCEeCCCCCHHHH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP----IKGKILLNGVPLVEISHEHL 471 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p----~~G~I~idg~~i~~~~~~~l 471 (643)
.|+++|++++| + .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 3 3699999999999999999999999999999999999999 999999999998632 223
Q ss_pred hcccEEEccCCC-CCc--ccHHHHhhcCC---CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 472 HRKISIVSQEPV-LFN--CSIEENIAYGC---DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 472 r~~i~~V~Q~~~-Lf~--gTireNI~~~~---~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
++.|+||+|++. .|. .|+.+|+.+.. .....+++++++++.+++.++ ++.+......||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 454 58888875420 012345678888888887552 2234556688999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHh
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
+|||||+++|+||||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988743 789999999999985 59999999999999999999987
Q ss_pred hcC-C-hHHHHHHHHh
Q 006489 623 SKG-G-VYTALVKRQL 636 (643)
Q Consensus 623 ~~~-g-~y~~l~~~q~ 636 (643)
+.. . .++.++..+.
T Consensus 230 ~~~~~~~~~~~~~~~~ 245 (254)
T PRK10418 230 NAPKHAVTRSLVSAHL 245 (254)
T ss_pred hCCCCHHHHHHHHhhh
Confidence 642 2 3444555443
No 240
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=6e-44 Score=356.19 Aligned_cols=206 Identities=28% Similarity=0.457 Sum_probs=170.5
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC---CCCCEEEECCEeCCCCCHHHHh
Q 006489 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD---PIKGKILLNGVPLVEISHEHLH 472 (643)
Q Consensus 397 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~---p~~G~I~idg~~i~~~~~~~lr 472 (643)
++|+||+|+|+..+ .+++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999998642 3679999999999999999999999999999999999999 99999999999875 35678
Q ss_pred cccEEEccCCCCCcc-cHHHHhhcCCCC---CC-CHH----HHHH-HHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 473 RKISIVSQEPVLFNC-SIEENIAYGCDG---KA-SSA----DIEN-AAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~g-TireNI~~~~~~---~~-~~~----~i~~-al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
+.++|++|++.+|++ |++||+.++... .. ..+ ++.+ .++..+ +..........||||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA-----------LTRIGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhc-----------chhhhcccccCcCHHHH
Confidence 899999999999987 999999875210 11 111 1111 222222 22222345578999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCc--hhHhhcCeEEEEeCCEEEEEc
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRL--STVQSADTVAVVSDGEIVESG 616 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl--~~i~~aD~Iivl~~G~Ive~G 616 (643)
||++||||++++|+++||||||++||+.+...+.+.|+++. +++|+|++||++ ...+.||+|++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998764 478999999998 456789999999999999876
No 241
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.5e-43 Score=375.17 Aligned_cols=207 Identities=34% Similarity=0.515 Sum_probs=179.2
Q ss_pred eEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC----HHHHhcccE
Q 006489 401 DVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS----HEHLHRKIS 476 (643)
Q Consensus 401 ~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~----~~~lr~~i~ 476 (643)
|++++|++. . + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|+.++
T Consensus 4 ~l~~~~~~~---~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDF---S-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCE---E-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 789999642 3 5 999999999999999999999999999999999999999999999987543 345688999
Q ss_pred EEccCCCCCc-ccHHHHhhcCCCCCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFN-CSIEENIAYGCDGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 551 (643)
Q Consensus 477 ~V~Q~~~Lf~-gTireNI~~~~~~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl 551 (643)
||+|++.+|. .|++||+.++.. ... ++++.++++..++.+.....| ..||||||||++|||||
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGqkqRvalAraL 146 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMK-RARPSERRISFERVIELLGIGHLLGRLP-----------GRLSGGEKQRVAIGRAL 146 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhh-ccChhHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999997 499999998632 111 234677777777766554444 68999999999999999
Q ss_pred ccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 552 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 552 ~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
+++|+++|||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++...
T Consensus 147 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 147 LSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence 999999999999999999999999999988754 789999999999886 5999999999999999999998764
No 242
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.3e-43 Score=350.16 Aligned_cols=206 Identities=27% Similarity=0.435 Sum_probs=180.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999974 36999999999999999999999999999999999999999999999999875422 35799
Q ss_pred EEccCCCCCc-ccHHHHhhcCCC-CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC
Q 006489 477 IVSQEPVLFN-CSIEENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 554 (643)
Q Consensus 477 ~V~Q~~~Lf~-gTireNI~~~~~-~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~ 554 (643)
|+||++.+|. .|++||+.++.. ...+++++.++++..++.+....- ...||||||||++||||++++
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-----------AKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhh-----------HhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 699999986421 123566788888888887654432 367999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhH
Q 006489 555 PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 555 p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~e 620 (643)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|+|++.|+.++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999998875 4789999999999985 699999999999999998765
No 243
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-43 Score=337.78 Aligned_cols=170 Identities=35% Similarity=0.607 Sum_probs=158.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
++++|++++|++ .++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||.++...+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999974 36999999999999999999999999999999999999999999999999998766 67788999
Q ss_pred EEccCCCCCcc-cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCC
Q 006489 477 IVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 555 (643)
Q Consensus 477 ~V~Q~~~Lf~g-TireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p 555 (643)
|++|++.+|.+ |++||+. ||||||||++||||++++|
T Consensus 77 ~~~q~~~~~~~~tv~~~~~------------------------------------------LS~G~~qrv~laral~~~p 114 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK------------------------------------------LSGGMKQRLALAQALLHDP 114 (173)
T ss_pred EEecCCccccCCcHHHHhh------------------------------------------cCHHHHHHHHHHHHHHcCC
Confidence 99999999986 9999984 9999999999999999999
Q ss_pred CEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEE
Q 006489 556 RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEI 612 (643)
Q Consensus 556 ~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~I 612 (643)
+++||||||++||+.+.+.+.+.|+++. ++.|+|++||+.+.+. .||+|++|++|++
T Consensus 115 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 115 ELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999998875 4689999999999887 6999999999974
No 244
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-43 Score=336.37 Aligned_cols=171 Identities=54% Similarity=0.895 Sum_probs=162.3
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++. ..++++|+||++++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++.+++...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 5789999999753 246999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 006489 477 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 556 (643)
Q Consensus 477 ~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~ 556 (643)
|++|++.+|+.|++||+ ||||||||++||||++++|+
T Consensus 80 ~~~~~~~~~~~t~~e~l-------------------------------------------LS~G~~~rl~la~al~~~p~ 116 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-------------------------------------------LSGGQRQRIAIARALLRDPP 116 (171)
T ss_pred EEcCCchhccchHHHHh-------------------------------------------hCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998 99999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCE
Q 006489 557 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGE 611 (643)
Q Consensus 557 IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~ 611 (643)
++||||||++||+.+...+.+.|+++.+++|+|++||+++.++.||++++|++|+
T Consensus 117 llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 117 ILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999998877899999999999998999999999984
No 245
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=3.8e-40 Score=345.76 Aligned_cols=474 Identities=16% Similarity=0.166 Sum_probs=349.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 006489 124 IFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGEL---LSRLSEDTQIIKNAATTNLSEAL 200 (643)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i---~~r~~~d~~~i~~~~~~~~~~~~ 200 (643)
.+++......+..+..|...-...+.+.++..-++++.++--..+.-++..+.| =+|++.|+++....+......++
T Consensus 128 ~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~ 207 (659)
T KOG0060|consen 128 YVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLL 207 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhh
Confidence 333444445555666777777777888888888877777654433222222222 36999999999988887777777
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHH
Q 006489 201 RNLSTAFIGLGFMFATSWKLTLLALVV-VPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNE 279 (643)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~l~l~~l~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 279 (643)
.+++.++.+...++...+|.+.+.+.. +.+-.++++.+.+.+.+...++.+...+..-.-.+...|.+.|-.|+.++.+
T Consensus 208 ~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E 287 (659)
T KOG0060|consen 208 KAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVE 287 (659)
T ss_pred ccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchH
Confidence 777777777777887777766665554 3445566777777788887777777777777777888999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCCHHHHHHHHH----HHHHHHHHH
Q 006489 280 ISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTI----TGSMTPGALTSFIL----YSLTVGSSV 351 (643)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~----~g~lt~g~l~~~~~----~~~~~~~~l 351 (643)
........++..+...+...+..++..+.+++-.+..++...+-+.-+. .+.+++..+...+. ++..+...+
T Consensus 288 ~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f 367 (659)
T KOG0060|consen 288 HQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAF 367 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHH
Confidence 8777777777776666665555555555444444443332222222222 24567776655443 233445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCC--------------CC-------CCCCCCCCCCCcEEEEeEEEECCCCC
Q 006489 352 SGLSSLYTVAMKAAGASRRVFQLLDRVSSMP--------------KS-------GNQCPLGDQDGEVELDDVWFAYPSRP 410 (643)
Q Consensus 352 ~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~--------------~~-------~~~~~~~~~~~~I~~~~vsf~Y~~~~ 410 (643)
..+......+.+......|+.++.+...+.. +. .+.....+.+..|+|++|++.=|..
T Consensus 368 ~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~- 446 (659)
T KOG0060|consen 368 GRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN- 446 (659)
T ss_pred HHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-
Confidence 6666666667777777788877765221110 00 0001112233569999999998874
Q ss_pred CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHH
Q 006489 411 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIE 490 (643)
Q Consensus 411 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTir 490 (643)
...+.+|+||+|+.|+.+.|+||||||||+|++.|.|+++..+|++.--...-. +.+-||||.|+.=.||+|
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~--------~~lfflPQrPYmt~GTLR 518 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP--------KDLFFLPQRPYMTLGTLR 518 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC--------CceEEecCCCCccccchh
Confidence 456778899999999999999999999999999999999999999976442111 359999999999999999
Q ss_pred HHhhcCC------CCCCCHHHHHHHHHHcCchHHHHcCCCccccccc-CCCCCCCHHHHHHHHHHHHHccCCCEEEEecc
Q 006489 491 ENIAYGC------DGKASSADIENAAKMANAHDFISNFPEKYQTFVG-ERGVRLSGGQKQRVAIARALMMNPRILLLDEA 563 (643)
Q Consensus 491 eNI~~~~------~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vg-e~G~~LSGGQrQRialARAl~~~p~IliLDE~ 563 (643)
|-+.|-. ...++|+++.+.++.+++.+. .....|+|+++- |-...||+||+||+|.||-+|++|++-||||+
T Consensus 519 dQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl-~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~ 597 (659)
T KOG0060|consen 519 DQVIYPLKAEDMDSKSASDEDILRILENVQLGHL-LEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDEC 597 (659)
T ss_pred heeeccCccccccccCCCHHHHHHHHHHhhhhhH-HHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeech
Confidence 9998851 124789999999999999874 455679998775 66899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeC
Q 006489 564 TSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 609 (643)
Q Consensus 564 TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~ 609 (643)
|||||.+.|..+.+.+++. +-|.|.|.||.+.-+.-|.++-|+.
T Consensus 598 TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 598 TSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred hhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 9999999999999999885 8999999999999999999999976
No 246
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-43 Score=338.33 Aligned_cols=172 Identities=44% Similarity=0.667 Sum_probs=159.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC--HHHHhcc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS--HEHLHRK 474 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~--~~~lr~~ 474 (643)
|+++|++++|++ .++++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 578999999964 36999999999999999999999999999999999999999999999999998876 5678899
Q ss_pred cEEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc
Q 006489 475 ISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 553 (643)
Q Consensus 475 i~~V~Q~~~Lf~-gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~ 553 (643)
++|++|+|.+|. .|++||+.+. ||||||||++||||+++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~----------------------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG----------------------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec----------------------------------------CCHHHHHHHHHHHHHHC
Confidence 999999999985 5999999753 99999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCE
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGE 611 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~ 611 (643)
+|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999988765 589999999999998 599999999984
No 247
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-43 Score=344.13 Aligned_cols=191 Identities=24% Similarity=0.372 Sum_probs=164.6
Q ss_pred cEEEEeEEEECCCC-CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC---CCCCEEEECCEeCCCCCHHHH
Q 006489 396 EVELDDVWFAYPSR-PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD---PIKGKILLNGVPLVEISHEHL 471 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~---p~~G~I~idg~~i~~~~~~~l 471 (643)
.+.++||+|.|+.. .+.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999853 35679999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hcccEEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 472 HRKISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 472 r~~i~~V~Q~~~Lf~-gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
++.++|++|++.+|. .|++|||.++.. .. ..+....||||||||++||||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~--~~---------------------------~~~~~~~LS~Ge~qrl~lara 132 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR--CK---------------------------GNEFVRGISGGERKRVSIAEA 132 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh--hc---------------------------cccchhhCCHHHHHHHHHHHH
Confidence 889999999999887 599999987621 10 123446899999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEcc-CchhH-hhcCeEEEEeCCEEEEEc
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAH-RLSTV-QSADTVAVVSDGEIVESG 616 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtH-rl~~i-~~aD~Iivl~~G~Ive~G 616 (643)
++++|+++||||||++||+++++.+.+.|+++.+ +.|+|+++| +++.+ +.||+|++|++|++++.|
T Consensus 133 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 133 LVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999998754 467666655 45554 679999999999998765
No 248
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1e-42 Score=353.45 Aligned_cols=227 Identities=27% Similarity=0.440 Sum_probs=181.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEe-----CCCCCHHH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVP-----LVEISHEH 470 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~-----i~~~~~~~ 470 (643)
.|+++|++++|++ ..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.+ +..++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999974 358999999999999999999999999999999999999999999999988 77666554
Q ss_pred ----HhcccEEEccCCC--C-CcccHHHHhhcCC--CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHH
Q 006489 471 ----LHRKISIVSQEPV--L-FNCSIEENIAYGC--DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 541 (643)
Q Consensus 471 ----lr~~i~~V~Q~~~--L-f~gTireNI~~~~--~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 541 (643)
+++.|+|++|++. + +..|+.+|+.+.. .......+.+ ..+.++++.+.-+ ++........|||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~l~l~-~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIR-----AAAHDWLEEVEID-PTRIDDLPRAFSGGM 153 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHH-----HHHHHHHHHcCCC-hhhhhcCchhcCHHH
Confidence 3467999999985 2 3468899985421 0001111111 1223344444211 134455678999999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcCh
Q 006489 542 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTH 618 (643)
Q Consensus 542 rQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~ 618 (643)
|||++|||||+++|+++||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+. .||++++|++|++++.|++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999987643 789999999999997 5999999999999999999
Q ss_pred hHHhhc-CChHHHH
Q 006489 619 EELLSK-GGVYTAL 631 (643)
Q Consensus 619 ~eL~~~-~g~y~~l 631 (643)
+++... ...|.++
T Consensus 234 ~~~~~~~~~~~~~~ 247 (253)
T TIGR02323 234 DQVLDDPQHPYTQL 247 (253)
T ss_pred HHHhcCCCCHHHHH
Confidence 998754 3445443
No 249
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.9e-43 Score=360.33 Aligned_cols=215 Identities=33% Similarity=0.557 Sum_probs=190.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++.+|.. ...+|+||||+|++|+.+|++||||||||||+++|+|+..|++|+|.++|.|...- ...+|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999973 24799999999999999999999999999999999999999999999999988765 78899999
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-----CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~-----~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
||+||+|.+++ -|++||+.|... .+..++++.++++..+|.+.- ...-..||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHH
Confidence 99999999885 699999988531 012356788999999887632 2234679999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-C-CeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHhhc
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-G-RTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~-~-~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||+++|++|||||||++||+.+...+.+.|+++.+ + +|+++.||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998875 4 699999999999977 999999999999999999998654
No 250
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-43 Score=346.61 Aligned_cols=201 Identities=32% Similarity=0.487 Sum_probs=170.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCC----CHHHHh
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI----SHEHLH 472 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~----~~~~lr 472 (643)
+++ |++++|++. .+ |+||+|++ |+++|+|+||||||||+++|+|+++|++|+|.++|.++... +...++
T Consensus 2 ~~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 2 LCV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred cee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 345 899999753 34 99999999 99999999999999999999999999999999999998643 234568
Q ss_pred cccEEEccCCCCCc-ccHHHHhhcCCCCCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 473 RKISIVSQEPVLFN-CSIEENIAYGCDGKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~-gTireNI~~~~~~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
+.++|++|++.+|. .|++||+.++.. .. .++++.++++..++.+.. ......||||||||++|
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 142 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLK-RKRNREDRISVDELLDLLGLDHLL-----------NRYPAQLSGGEKQRVAL 142 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHh-hCCHHHHHHHHHHHHHHcCCHhHh-----------hcCcccCCHHHHHHHHH
Confidence 89999999999996 699999987632 11 233456666666654433 34557899999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEc
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 616 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G 616 (643)
|||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 143 ARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999988753 789999999999985 69999999999999876
No 251
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.2e-42 Score=351.07 Aligned_cols=208 Identities=31% Similarity=0.452 Sum_probs=182.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 4899999999974 3699999999999999999999999999999999999999999999987 2479
Q ss_pred EEEccCCCCCc---ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 476 SIVSQEPVLFN---CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 476 ~~V~Q~~~Lf~---gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
+|++|++.++. .|+++|+.+. + ..+++++.++++.+++.+++... ...||||||||++||||++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~ 136 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-P-GTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALL 136 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-c-cccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHh
Confidence 99999998865 4899998765 2 45677889999999998766543 3679999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhcCChHH
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKGGVYT 629 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~ 629 (643)
++|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++ +|++.|+++++.+ +..|.
T Consensus 137 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~ 214 (251)
T PRK09544 137 NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFI 214 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHH
Confidence 99999999999999999999999999987653 789999999999985 5999999965 7999999999764 45566
Q ss_pred HHH
Q 006489 630 ALV 632 (643)
Q Consensus 630 ~l~ 632 (643)
+++
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 655
No 252
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-43 Score=357.10 Aligned_cols=211 Identities=28% Similarity=0.422 Sum_probs=177.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++ .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 4899999999963 2469999999999999999999999999999999999999999999999998752 2223469
Q ss_pred EEEccCCCC---CcccHHHHhhcCCC---------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 476 SIVSQEPVL---FNCSIEENIAYGCD---------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 476 ~~V~Q~~~L---f~gTireNI~~~~~---------~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
+|+||++.+ +..++++|+.++.. ...+++++.++++..++.++... . ...|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~----~~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-------Q----IGELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC-------C----cccCCHHHHH
Confidence 999999865 45689999875411 01123456778888888765433 2 3469999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHH
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL 621 (643)
|++|||||+++|+|+||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+++++ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999998875 478999999999887 569999777 8999999999997
Q ss_pred hh
Q 006489 622 LS 623 (643)
Q Consensus 622 ~~ 623 (643)
.+
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 64
No 253
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.9e-42 Score=351.29 Aligned_cols=213 Identities=25% Similarity=0.455 Sum_probs=179.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcC--CCCCCCEEEECCEeCCCCCHHHHhc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF--YDPIKGKILLNGVPLVEISHEHLHR 473 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~--~~p~~G~I~idg~~i~~~~~~~lr~ 473 (643)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++..++...+++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4999999999974 3699999999999999999999999999999999998 6899999999999999888766665
Q ss_pred -ccEEEccCCCCCcc-cHHHHhhcCCCC--------CCC----HHHHHHHHHHcCchH-HHHcCCCcccccccCCCCCCC
Q 006489 474 -KISIVSQEPVLFNC-SIEENIAYGCDG--------KAS----SADIENAAKMANAHD-FISNFPEKYQTFVGERGVRLS 538 (643)
Q Consensus 474 -~i~~V~Q~~~Lf~g-TireNI~~~~~~--------~~~----~~~i~~al~~a~l~~-~i~~lp~G~~T~vge~G~~LS 538 (643)
.++|++|++.+|++ |+++|+.++... +.+ .+++.++++.+++.+ .+.. .++ ..||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~---~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSR-------NVN---EGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcc-------ccc---cCCC
Confidence 58999999999975 899998764210 111 133456666666642 2222 221 1499
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh--cCeEEEEeCCEEEEE
Q 006489 539 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS--ADTVAVVSDGEIVES 615 (643)
Q Consensus 539 GGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~--aD~Iivl~~G~Ive~ 615 (643)
||||||++||||++++|+|+||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999998875 47999999999999875 899999999999999
Q ss_pred cChhHH
Q 006489 616 GTHEEL 621 (643)
Q Consensus 616 G~~~eL 621 (643)
|+++++
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 999843
No 254
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=9e-43 Score=330.14 Aligned_cols=163 Identities=33% Similarity=0.508 Sum_probs=151.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 5799999999643 46999999999999999999999999999999999999999999999883 5899
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 006489 477 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 556 (643)
Q Consensus 477 ~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~ 556 (643)
|++|++.+++.|++|||.++ ....||||||||++||||++++|+
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~------------------------------------~~~~LS~G~~~rv~laral~~~p~ 111 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP------------------------------------WDDVLSGGEQQRLAFARLLLHKPK 111 (166)
T ss_pred EECCCCccccccHHHHhhcc------------------------------------CCCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999763 247899999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCC
Q 006489 557 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDG 610 (643)
Q Consensus 557 IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G 610 (643)
++||||||++||+++.+.+.+.|++. ++|+|+|||+++....||+|++|++|
T Consensus 112 ~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 112 FVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 99999999999999999999999886 69999999999999999999999886
No 255
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=9.8e-43 Score=352.66 Aligned_cols=213 Identities=27% Similarity=0.423 Sum_probs=171.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcC--CCCCCCEEEECCEeCCCCCHHHHh-c
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF--YDPIKGKILLNGVPLVEISHEHLH-R 473 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~--~~p~~G~I~idg~~i~~~~~~~lr-~ 473 (643)
|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+ ++|++|+|.+||.++...+....+ .
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999974 3699999999999999999999999999999999999 479999999999999888876655 5
Q ss_pred ccEEEccCCCCCcc-cHHHHhhcC-------CCCC-CCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHH
Q 006489 474 KISIVSQEPVLFNC-SIEENIAYG-------CDGK-ASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 540 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~g-TireNI~~~-------~~~~-~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 540 (643)
.++|++|++.++.. |..+|+.+. .... .+. +.+.++++.. .+|+++.+... ...||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~--~~~LS~G 149 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL-------KMPEDLLTRSV--NVGFSGG 149 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc-------CCChhhcccCC--CCCCCHH
Confidence 79999999988764 555554321 0000 111 1122222222 34444433321 2379999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhHhh--cCeEEEEeCCEEEEEcC
Q 006489 541 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQS--ADTVAVVSDGEIVESGT 617 (643)
Q Consensus 541 QrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~VtHrl~~i~~--aD~Iivl~~G~Ive~G~ 617 (643)
||||++||||++++|+|+||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999987654 6899999999999987 89999999999999999
Q ss_pred hhHH
Q 006489 618 HEEL 621 (643)
Q Consensus 618 ~~eL 621 (643)
+++.
T Consensus 230 ~~~~ 233 (248)
T PRK09580 230 FTLV 233 (248)
T ss_pred HHHH
Confidence 9865
No 256
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=8.1e-43 Score=339.22 Aligned_cols=183 Identities=31% Similarity=0.519 Sum_probs=163.2
Q ss_pred cEEEEeEEEECCCC---CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCC--CCCCCEEEECCEeCCCCCHHH
Q 006489 396 EVELDDVWFAYPSR---PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY--DPIKGKILLNGVPLVEISHEH 470 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~---~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~--~p~~G~I~idg~~i~~~~~~~ 470 (643)
.|+++|++|+|+.. .+.++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999752 0257999999999999999999999999999999999999 9999999999998875 36
Q ss_pred HhcccEEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 471 LHRKISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 471 lr~~i~~V~Q~~~Lf~-gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+++.++|++|++.+|. .|++||+.++.. .. .||||||||++|||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~--~~---------------------------------~LS~G~~qrv~lar 124 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK--LR---------------------------------GLSGGERKRVSIAL 124 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH--hc---------------------------------cCCHHHHHHHHHHH
Confidence 7889999999999987 599999976411 00 89999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCch-hH-hhcCeEEEEeCCEEEEEc
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLS-TV-QSADTVAVVSDGEIVESG 616 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~-~i-~~aD~Iivl~~G~Ive~G 616 (643)
|++++|+++||||||++||+++.+.+.+.|+++. +++|+|+|||+++ .+ +.||+|++|++|++++.|
T Consensus 125 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 125 ELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999998875 4789999999996 44 569999999999998764
No 257
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=6.2e-43 Score=344.05 Aligned_cols=195 Identities=28% Similarity=0.439 Sum_probs=167.4
Q ss_pred EEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH----HHHhcc
Q 006489 399 LDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH----EHLHRK 474 (643)
Q Consensus 399 ~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~----~~lr~~ 474 (643)
++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..++. ...++.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4789999974 369999999999999999999999999999999999999999999999999765542 246788
Q ss_pred cEEEccCCCCCc-ccHHHHhhcCCC-----CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 475 ISIVSQEPVLFN-CSIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 475 i~~V~Q~~~Lf~-gTireNI~~~~~-----~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
++|++|++.+|+ .|++||+.++.. ....++++.++++..++.++... ...+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ-----------KIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcC-----------ChhhCCHHHHHHHHHH
Confidence 999999999997 799999987421 01123456777888777654433 2467999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEEE
Q 006489 549 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV 607 (643)
Q Consensus 549 RAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl 607 (643)
|||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999999998875 378999999999999999999885
No 258
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-43 Score=339.15 Aligned_cols=182 Identities=28% Similarity=0.459 Sum_probs=162.1
Q ss_pred cEEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCC--CCCCCEEEECCEeCCCCCHHHHh
Q 006489 396 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY--DPIKGKILLNGVPLVEISHEHLH 472 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~--~p~~G~I~idg~~i~~~~~~~lr 472 (643)
.|+++|++|+|++.. ++++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.+||.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999997421 246999999999999999999999999999999999986 489999999999885 5678
Q ss_pred cccEEEccCCCCCcc-cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH
Q 006489 473 RKISIVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 551 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~g-TireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl 551 (643)
++++|++|++.+|.. |++||+.++.. ++ .||||||||++||||+
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~-----------~~------------------------~LSgGe~qrv~la~al 123 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL-----------LR------------------------GLSVEQRKRLTIGVEL 123 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH-----------Hh------------------------cCCHHHhHHHHHHHHH
Confidence 899999999998874 99999986410 00 8999999999999999
Q ss_pred ccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchh--HhhcCeEEEEeC-CEEEEEc
Q 006489 552 MMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST--VQSADTVAVVSD-GEIVESG 616 (643)
Q Consensus 552 ~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~--i~~aD~Iivl~~-G~Ive~G 616 (643)
+++|+++||||||++||+++...+.+.|+++. +++|+|+|||+++. ...||+|++|++ |+|++.|
T Consensus 124 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 124 AAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999998865 47899999999984 577999999999 9999865
No 259
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=8.4e-43 Score=335.84 Aligned_cols=172 Identities=27% Similarity=0.511 Sum_probs=157.4
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC-HHHHhcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS-HEHLHRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~-~~~lr~~ 474 (643)
-|+++|++++| +++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+|++
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 38999999988 799999999999999999999999999999999999999999999999999887 4457889
Q ss_pred cEEEccCC----CCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 475 ISIVSQEP----VLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 475 i~~V~Q~~----~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
++|++|++ .+++.|++||+.++. . ||||||||++||||
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~--~------------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSS--L------------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHh--h------------------------------------cCHHHHHHHHHHHH
Confidence 99999995 344689999998751 1 99999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCCEE
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEI 612 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G~I 612 (643)
++++|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 119 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999998874 47899999999998876 999999999974
No 260
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.3e-42 Score=337.90 Aligned_cols=185 Identities=32% Similarity=0.532 Sum_probs=163.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcC--CCCCCCEEEECCEeCCCCCHHHH-hc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF--YDPIKGKILLNGVPLVEISHEHL-HR 473 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~--~~p~~G~I~idg~~i~~~~~~~l-r~ 473 (643)
++++|++++|++ .++++|+||++++||.++|+|+||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999974 3699999999999999999999999999999999999 58999999999999999887654 55
Q ss_pred ccEEEccCCCCCcc-cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 474 KISIVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~g-TireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
+++|+||++.+|++ |+++|+ .. ....||||||||++||||++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l--------------------------~~-----------~~~~LS~G~~qrv~laral~ 120 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL--------------------------RY-----------VNEGFSGGEKKRNEILQLLL 120 (200)
T ss_pred cEEEeecChhhccCccHHHHH--------------------------hh-----------ccccCCHHHHHHHHHHHHHh
Confidence 69999999999875 444444 00 01479999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhHh--hcCeEEEEeCCEEEEEcChhHHh
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQ--SADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~VtHrl~~i~--~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
++|+|+||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.| +.|+.
T Consensus 121 ~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999999999988753 789999999999998 69999999999999999 44554
No 261
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-43 Score=342.31 Aligned_cols=218 Identities=34% Similarity=0.580 Sum_probs=191.6
Q ss_pred cEEEEeEEEECCCCCC---------------------CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCC
Q 006489 396 EVELDDVWFAYPSRPN---------------------HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG 454 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~---------------------~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G 454 (643)
.|+++||+.-+..++. ..-++|+||+|+.||+..|-|=||||||||++++-|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4889999887754321 1237899999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHH----hcccEEEccCCCCC-cccHHHHhhcCCC-CCC----CHHHHHHHHHHcCchHHHHcCCC
Q 006489 455 KILLNGVPLVEISHEHL----HRKISIVSQEPVLF-NCSIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPE 524 (643)
Q Consensus 455 ~I~idg~~i~~~~~~~l----r~~i~~V~Q~~~Lf-~gTireNI~~~~~-~~~----~~~~i~~al~~a~l~~~i~~lp~ 524 (643)
+|++||.|+..++.++| |+++++|+|+.-|| .-||.||..||-+ ... .+++..++++.++|++|=.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 99999999999997776 45799999999999 5899999999843 112 23457789999999999988884
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHH--cCCCeEEEEccCchh-Hhhc
Q 006489 525 KYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSL--MKGRTVLVIAHRLST-VQSA 601 (643)
Q Consensus 525 G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~--~~~~TvI~VtHrl~~-i~~a 601 (643)
.||||++||+.|||||..+||||++|||+|||||--....++.+.++ .-+||+|+|||+|+. ++-.
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 57999999999999999999999999999999999999999988654 238999999999986 6889
Q ss_pred CeEEEEeCCEEEEEcChhHHhhc
Q 006489 602 DTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 602 D~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|||..|++|+||+.||++|++.+
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~ 255 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLN 255 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcC
Confidence 99999999999999999999865
No 262
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2e-42 Score=332.58 Aligned_cols=177 Identities=36% Similarity=0.599 Sum_probs=161.4
Q ss_pred EEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEE
Q 006489 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISI 477 (643)
Q Consensus 398 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 477 (643)
+++|++|+|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 57899999974 369999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 006489 478 VSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRI 557 (643)
Q Consensus 478 V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~I 557 (643)
++| +++.+++.+++.. ....||||||||++||||++++|++
T Consensus 78 ~~q----------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 78 VPQ----------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred HHH----------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999 6677777665543 3468999999999999999999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEc
Q 006489 558 LLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESG 616 (643)
Q Consensus 558 liLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G 616 (643)
+||||||++||+++...+.+.|+++.+ ++|+|++||+++.+ +.||++++|++|++++.|
T Consensus 119 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999988755 78999999999997 569999999999998754
No 263
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.4e-43 Score=311.84 Aligned_cols=193 Identities=31% Similarity=0.505 Sum_probs=174.4
Q ss_pred CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHH
Q 006489 411 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIE 490 (643)
Q Consensus 411 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTir 490 (643)
+.++|+|+||++.+||+++|.||||||||||+|.++-+.+|++|++++.|.|++.++++.+|++|+|+-|.|.||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC---CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCC
Q 006489 491 ENIAYG---CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSAL 567 (643)
Q Consensus 491 eNI~~~---~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaL 567 (643)
||+-|- .....+.+...+.++.+++.+.+ +..+-.+||||+|||+||+|-|---|+||+|||+||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~~~----------L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPDSI----------LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCchhh----------hcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 999773 11245666677777777776544 44557889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc--CCCeEEEEccCchh-HhhcCeEEEEeCCEEE
Q 006489 568 DAESEYLVQDAMDSLM--KGRTVLVIAHRLST-VQSADTVAVVSDGEIV 613 (643)
Q Consensus 568 D~~te~~i~~~i~~~~--~~~TvI~VtHrl~~-i~~aD~Iivl~~G~Iv 613 (643)
|+.+.+.|.+.|.++. ++..++-|||+... +++||+++-+..|++-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 9999999999998876 57799999999998 8999999999999863
No 264
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=5.9e-42 Score=346.21 Aligned_cols=217 Identities=26% Similarity=0.410 Sum_probs=181.3
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
++++||++. .+|+|+||+|++||+++|+|+||||||||+++|+|+++ .+|+|.+||.++.+.+...+++.++
T Consensus 1 ~~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~ 72 (248)
T PRK03695 1 MQLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRA 72 (248)
T ss_pred Ccccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheE
Confidence 357788874 27999999999999999999999999999999999986 5999999999999888888888999
Q ss_pred EEccCCCC-CcccHHHHhhcCCCCCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH
Q 006489 477 IVSQEPVL-FNCSIEENIAYGCDGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 551 (643)
Q Consensus 477 ~V~Q~~~L-f~gTireNI~~~~~~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl 551 (643)
|++|++.+ +..|+++|+.++.+...+ ++++.++++..++.+... .....||||||||++|||||
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 141 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-----------RSVNQLSGGEWQRVRLAAVV 141 (248)
T ss_pred EecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHH
Confidence 99999854 578999999986431111 234666777766654433 34568999999999999999
Q ss_pred cc-------CCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHh
Q 006489 552 MM-------NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 552 ~~-------~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
++ +|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++.
T Consensus 142 ~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 142 LQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred hccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 97 679999999999999999999999998875 478999999999966 569999999999999999999986
Q ss_pred hcCChHHHHHH
Q 006489 623 SKGGVYTALVK 633 (643)
Q Consensus 623 ~~~g~y~~l~~ 633 (643)
+. ....+.+.
T Consensus 222 ~~-~~~~~~~~ 231 (248)
T PRK03695 222 TP-ENLAQVFG 231 (248)
T ss_pred Cc-hHHHHHhC
Confidence 43 23444443
No 265
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-42 Score=325.08 Aligned_cols=221 Identities=29% Similarity=0.476 Sum_probs=188.4
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH-hcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~ 474 (643)
-++++|++-.|.. ..+|++|||++++||+++++|+||+|||||+++|+|+.+|.+|+|.++|.|+...+++.. |.-
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999974 469999999999999999999999999999999999999999999999999999987765 666
Q ss_pred cEEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc
Q 006489 475 ISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 553 (643)
Q Consensus 475 i~~V~Q~~~Lf~-gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~ 553 (643)
|+||||.-.+|. -||.||+.+|.. ...+++. ....+++..+-+| -+......++.+|||||+|-+||||||..
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~-~~~~~~~----~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAY-ARRDKEA----QERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhh-ccccccc----ccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 999999999995 699999998732 1111111 1111333344455 35556677899999999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhcC
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 625 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 625 (643)
+|++|+|||||.+|-|.--+.|.+.|+++.+ +-|+++|-++.... +-||+.+||++|+|+.+|+.+||.+..
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999988999999998864 55999999999875 679999999999999999999998753
No 266
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=4.8e-42 Score=343.31 Aligned_cols=206 Identities=35% Similarity=0.483 Sum_probs=171.2
Q ss_pred ceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC----CCCEEEECCEeCCCCCHHHHhcccEEEccCCC-CCc--
Q 006489 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP----IKGKILLNGVPLVEISHEHLHRKISIVSQEPV-LFN-- 486 (643)
Q Consensus 414 vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p----~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~-Lf~-- 486 (643)
+++|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.+||+++... +..++.++|++|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999998754 333468999999995 343
Q ss_pred ccHHHHhhcCC-----CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Q 006489 487 CSIEENIAYGC-----DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 561 (643)
Q Consensus 487 gTireNI~~~~-----~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLD 561 (643)
-|+.||+.+.. .....++++.++++.+++.+ + ++........||||||||++||||++++|+|+|||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 59999986431 10112344677777777752 1 12334456789999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc-CChHH
Q 006489 562 EATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK-GGVYT 629 (643)
Q Consensus 562 E~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~-~g~y~ 629 (643)
|||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++... ...|.
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 222 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETT 222 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHH
Confidence 99999999999999999988753 789999999999985 5999999999999999999999864 34444
No 267
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=8.6e-42 Score=341.22 Aligned_cols=192 Identities=35% Similarity=0.502 Sum_probs=164.1
Q ss_pred eeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCc-ccHHHHh
Q 006489 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN-CSIEENI 493 (643)
Q Consensus 415 L~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-gTireNI 493 (643)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|++|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999877553 2489999999987 6999999
Q ss_pred hcCCC---CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCC
Q 006489 494 AYGCD---GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSA 566 (643)
Q Consensus 494 ~~~~~---~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSa 566 (643)
.++.. ...++ +++.++++..++.+.... ....||||||||++|||||+++|+++||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-----------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-----------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 87410 12332 235667777777654433 2467999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHh
Q 006489 567 LDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 567 LD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+..+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998764 3789999999999875 59999999999999999876653
No 268
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=9e-42 Score=379.75 Aligned_cols=214 Identities=30% Similarity=0.462 Sum_probs=185.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHh-cc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLH-RK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr-~~ 474 (643)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4999999999964 3699999999999999999999999999999999999999999999999999888766654 56
Q ss_pred cEEEccCCCCCc-ccHHHHhhcCCCC-CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 475 ISIVSQEPVLFN-CSIEENIAYGCDG-KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 475 i~~V~Q~~~Lf~-gTireNI~~~~~~-~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
++||+|++.+|. -|++||+.++... ...++++.++++..++.++.. ..-..||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD-----------SSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcccc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 999999999886 5999999987421 112345667777776654322 234579999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhh
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++++.+
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999999999998764 4789999999999885 599999999999999999988754
No 269
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=8.9e-42 Score=334.06 Aligned_cols=195 Identities=26% Similarity=0.424 Sum_probs=171.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 578999999964 36899999999999999999999999999999999999999999999999987653 46788999
Q ss_pred EEccCCCCC-cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCC
Q 006489 477 IVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 555 (643)
Q Consensus 477 ~V~Q~~~Lf-~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p 555 (643)
|++|++.++ +.|++||+.+..+ ..+++++.++++..++.++... ...+||||||||++||||++++|
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGFEDR-----------PVAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcc-cccHHHHHHHHHHcCChhhhcC-----------chhhCCHHHHHHHHHHHHHhcCC
Confidence 999999886 6899999988754 3467788899999988765432 23679999999999999999999
Q ss_pred CEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchh-HhhcCeEEEE
Q 006489 556 RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST-VQSADTVAVV 607 (643)
Q Consensus 556 ~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~-i~~aD~Iivl 607 (643)
+++||||||++||+.+.+.+.+.|++.. +++|+|+|||+... ...+|+++++
T Consensus 145 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 145 PLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999998764 47999999998765 5678888876
No 270
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.4e-42 Score=334.50 Aligned_cols=195 Identities=25% Similarity=0.373 Sum_probs=167.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 789999999964 369999999999999999999999999999999999999999999999998875 3467889999
Q ss_pred EEccCCCCC-cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCC
Q 006489 477 IVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 555 (643)
Q Consensus 477 ~V~Q~~~Lf-~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p 555 (643)
|++|++.++ ..|++||+.++.....++.++.++++..++.+... .. ...||||||||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-------YP----CGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhh-------CC----hhhcCHHHHHHHHHHHHHhcCC
Confidence 999999986 58999999886311223445667777666644322 22 2469999999999999999999
Q ss_pred CEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEE
Q 006489 556 RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAV 606 (643)
Q Consensus 556 ~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iiv 606 (643)
+++||||||++||+.+...+.+.|+++. +++|+|+|||+...+.+||.-++
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999998863 57899999999999999997654
No 271
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.3e-41 Score=321.18 Aligned_cols=159 Identities=36% Similarity=0.537 Sum_probs=148.3
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhccc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRKI 475 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~i 475 (643)
|+++|++++|++ .++++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||.++...+. +..++++
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 579999999974 369999999999999999999999999999999999999999999999999998876 4567889
Q ss_pred EEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCC
Q 006489 476 SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 555 (643)
Q Consensus 476 ~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p 555 (643)
+|++| ||||||||++||||++++|
T Consensus 78 ~~~~q--------------------------------------------------------LS~G~~qrl~laral~~~p 101 (163)
T cd03216 78 AMVYQ--------------------------------------------------------LSVGERQMVEIARALARNA 101 (163)
T ss_pred EEEEe--------------------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 99999 9999999999999999999
Q ss_pred CEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEE
Q 006489 556 RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVE 614 (643)
Q Consensus 556 ~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive 614 (643)
+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999998874 4789999999999875 599999999999975
No 272
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=385.39 Aligned_cols=227 Identities=29% Similarity=0.470 Sum_probs=189.5
Q ss_pred cEEEEeEEEECCCCC--------CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC
Q 006489 396 EVELDDVWFAYPSRP--------NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS 467 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~--------~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~ 467 (643)
-++++|++++|+... ...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996310 236899999999999999999999999999999999999999999999999998776
Q ss_pred HH---HHhcccEEEccCCC--CCc-ccHHHHhhcCC--CCCCC----HHHHHHHHHHcCch-HHHHcCCCcccccccCCC
Q 006489 468 HE---HLHRKISIVSQEPV--LFN-CSIEENIAYGC--DGKAS----SADIENAAKMANAH-DFISNFPEKYQTFVGERG 534 (643)
Q Consensus 468 ~~---~lr~~i~~V~Q~~~--Lf~-gTireNI~~~~--~~~~~----~~~i~~al~~a~l~-~~i~~lp~G~~T~vge~G 534 (643)
.. .+|++|+||+|+|. ++. -|++||+.+.. ....+ ++++.++++.+++. +.....|
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~----------- 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP----------- 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----------
Confidence 43 46778999999984 664 69999997531 00111 24567778888874 4444444
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhh-cCeEEEEeCCE
Q 006489 535 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGE 611 (643)
Q Consensus 535 ~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~-aD~Iivl~~G~ 611 (643)
..||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 57999999999999999999999999999999999999999999988653 7899999999999864 99999999999
Q ss_pred EEEEcChhHHhhc-CChHHH-HHH
Q 006489 612 IVESGTHEELLSK-GGVYTA-LVK 633 (643)
Q Consensus 612 Ive~G~~~eL~~~-~g~y~~-l~~ 633 (643)
|++.|+.+++... ...|.+ ++.
T Consensus 542 iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 542 IVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred EEEecCHHHHhcCCCCHHHHHHHh
Confidence 9999999998764 445644 444
No 273
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-42 Score=380.28 Aligned_cols=213 Identities=26% Similarity=0.373 Sum_probs=180.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC--CCCEEEECCEeCCCCCHHH-Hh
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP--IKGKILLNGVPLVEISHEH-LH 472 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p--~~G~I~idg~~i~~~~~~~-lr 472 (643)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... +|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 3699999999999999999999999999999999999996 8999999999998777554 56
Q ss_pred cccEEEccCCCCCc-ccHHHHhhcCCCC----CCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 473 RKISIVSQEPVLFN-CSIEENIAYGCDG----KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~-gTireNI~~~~~~----~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
+.++||+|++.+|. -|++||+.++... ..+. +++.++++..++.+. ......+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN-----------PATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHHHHH
Confidence 78999999999886 5999999886320 1122 234555555544322 22334679999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHH
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL 621 (643)
|++|||||+.+|+|||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|+|++.|+.+++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999999998864 4789999999999886 5999999999999999998876
Q ss_pred h
Q 006489 622 L 622 (643)
Q Consensus 622 ~ 622 (643)
.
T Consensus 231 ~ 231 (506)
T PRK13549 231 T 231 (506)
T ss_pred C
Confidence 4
No 274
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-42 Score=380.40 Aligned_cols=214 Identities=24% Similarity=0.373 Sum_probs=181.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH-Hhcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH-LHRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~-lr~~ 474 (643)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 3899999999964 36999999999999999999999999999999999999999999999999998887654 4567
Q ss_pred cEEEccCCCCCc-ccHHHHhhcCCCC-----C---CC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHH
Q 006489 475 ISIVSQEPVLFN-CSIEENIAYGCDG-----K---AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 541 (643)
Q Consensus 475 i~~V~Q~~~Lf~-gTireNI~~~~~~-----~---~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 541 (643)
|+||+|++.+|. -|++||+.++... . .+ ++++.++++..++.+. .+ ..-.+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~----~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-------LD----EKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-------cc----cchhhCCHHH
Confidence 999999999886 4999999875210 1 11 1234555666555432 22 2335799999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChh
Q 006489 542 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHE 619 (643)
Q Consensus 542 rQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~ 619 (643)
|||++|||||+.+|+|||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999999998764 4789999999999986 59999999999999999998
Q ss_pred HHhh
Q 006489 620 ELLS 623 (643)
Q Consensus 620 eL~~ 623 (643)
++..
T Consensus 231 ~~~~ 234 (510)
T PRK09700 231 DVSN 234 (510)
T ss_pred hCCH
Confidence 8643
No 275
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.8e-41 Score=332.87 Aligned_cols=196 Identities=20% Similarity=0.333 Sum_probs=170.3
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 789999999964 36999999999999999999999999999999999999999999999999987654 45678899
Q ss_pred EEccCCCCCc-ccHHHHhhcCCCC--CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc
Q 006489 477 IVSQEPVLFN-CSIEENIAYGCDG--KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 553 (643)
Q Consensus 477 ~V~Q~~~Lf~-gTireNI~~~~~~--~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~ 553 (643)
|++|++.+++ .|++||+.++.+. ..+++++.++++..++.++.... ...||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP-----------VRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHHHHHHhc
Confidence 9999998886 6999999876321 13456788899999987654332 35799999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEE
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVV 607 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl 607 (643)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998764 47899999999999955 4677666
No 276
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.8e-41 Score=340.35 Aligned_cols=193 Identities=25% Similarity=0.452 Sum_probs=160.6
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEc-cCCCCC-cccH
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVS-QEPVLF-NCSI 489 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~-Q~~~Lf-~gTi 489 (643)
.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ...++++++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 346788999997 667776 5799
Q ss_pred HHHhhcCCC-CCCCHH----HHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccc
Q 006489 490 EENIAYGCD-GKASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEAT 564 (643)
Q Consensus 490 reNI~~~~~-~~~~~~----~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~T 564 (643)
+||+.+... ...+.+ ++.++++..++.+. .++. ...||||||||++||||++.+|+++||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~~----~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-------LDTP----VRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-------hcCC----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999976421 122332 23445555555433 2333 3569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEc
Q 006489 565 SALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 616 (643)
Q Consensus 565 SaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G 616 (643)
++||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999988743 789999999999875 59999999999998765
No 277
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.3e-41 Score=360.34 Aligned_cols=231 Identities=33% Similarity=0.526 Sum_probs=192.1
Q ss_pred cEEEEeEEEECCCC--------CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEe--CCC
Q 006489 396 EVELDDVWFAYPSR--------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVP--LVE 465 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~--------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~--i~~ 465 (643)
-++++|++.+|... ....+++||||++++||++||||+||||||||+++|+|+.+|++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 47899999999842 13468999999999999999999999999999999999999999999999977 332
Q ss_pred CCHHHHhcccEEEccCCCCC---cccHHHHhhcCC--CCCC----CHHHHHHHHHHcCchH-HHHcCCCcccccccCCCC
Q 006489 466 ISHEHLHRKISIVSQEPVLF---NCSIEENIAYGC--DGKA----SSADIENAAKMANAHD-FISNFPEKYQTFVGERGV 535 (643)
Q Consensus 466 ~~~~~lr~~i~~V~Q~~~Lf---~gTireNI~~~~--~~~~----~~~~i~~al~~a~l~~-~i~~lp~G~~T~vge~G~ 535 (643)
-.....|+++-+|+|||+-. ..||+++|.--- .... .++++.+.++.++|.+ +....| .
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP-----------~ 428 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP-----------H 428 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc-----------h
Confidence 23556788999999999842 479999985321 0011 1234777788888875 455555 5
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHhh-cCeEEEEeCCEE
Q 006489 536 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEI 612 (643)
Q Consensus 536 ~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~~-aD~Iivl~~G~I 612 (643)
.||||||||+||||||..+|+++|+||||||||+-+.+.|.+.|.++.+ +.|.|+|||++..++. ||+|+||++|+|
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence 6899999999999999999999999999999999999999999977643 6899999999999975 999999999999
Q ss_pred EEEcChhHHhhc-CChHHHHHHHHhc
Q 006489 613 VESGTHEELLSK-GGVYTALVKRQLQ 637 (643)
Q Consensus 613 ve~G~~~eL~~~-~g~y~~l~~~q~~ 637 (643)
||.|+.+++.+. +..|.+.+..-.+
T Consensus 509 VE~G~~~~v~~~p~h~Ytr~L~~avp 534 (539)
T COG1123 509 VEEGPTEKVFENPQHPYTRKLLAAVP 534 (539)
T ss_pred EEeCCHHHHhcCCCChHHHHHHHhcc
Confidence 999999998875 7788776654433
No 278
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-42 Score=316.71 Aligned_cols=214 Identities=31% Similarity=0.472 Sum_probs=187.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
++++++|.+|++. ..+++||||+++.||.++|.|++||||||+++.|..++.|++|.|++||.|+... +...|++||
T Consensus 2 l~v~~l~K~y~~~--v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccCH--HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 6889999999852 3489999999999999999999999999999999999999999999999998775 567899999
Q ss_pred EEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
+++-+.-|+. -|.||||.|+.. .+.+ +.++.+..+.-++.+.+. +. -.+||-|+|||++||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-------rR----v~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-------RR----VGEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-------HH----HhhhchhhHHHHHHHHH
Confidence 9998888885 699999988732 0122 445666666767766643 33 34589999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|++||+|+|||||||+||-.+.+.+.+-|.+... ++++|+.||-++.++ -||+|+++++|++|..|+.+++.++
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999999988765 999999999999998 7999999999999999999998764
No 279
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3e-41 Score=375.29 Aligned_cols=213 Identities=28% Similarity=0.380 Sum_probs=179.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH-Hhcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH-LHRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~-lr~~ 474 (643)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999964 36999999999999999999999999999999999999999999999999997766544 4678
Q ss_pred cEEEccCCCCCc-ccHHHHhhcCCCC-----CCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHH
Q 006489 475 ISIVSQEPVLFN-CSIEENIAYGCDG-----KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 475 i~~V~Q~~~Lf~-gTireNI~~~~~~-----~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
++||+|++.+|. -|++||+.++... ..+. +++.++++..++.+.. ...-.+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-----------DKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc-----------cCchhhCCHHHHHH
Confidence 999999998886 5999999886320 1122 2345555555553321 22345799999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHh
Q 006489 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 545 ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+.+++.
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 999999999999999999999999999999999998763 4789999999999885 59999999999999999988764
No 280
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.6e-41 Score=373.19 Aligned_cols=211 Identities=24% Similarity=0.317 Sum_probs=184.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 899999999974 35999999999999999999999999999999999999999999999999887777777888899
Q ss_pred EEccCCCC---------CcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 477 IVSQEPVL---------FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 477 ~V~Q~~~L---------f~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
|++|++.+ +.-|++||+.++. ..++++.++++..++.+..... ...||||||||++|
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~l 146 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV---KDPARCEQLAQQFGITALLDRR-----------FKYLSTGETRKTLL 146 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch---hHHHHHHHHHHHcCCHhhhhCC-----------cccCCHHHHHHHHH
Confidence 99998753 2469999987641 2355678888888886654433 36789999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
||||+.+|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|+..|+.+++.+.
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 999999999999999999999999999999998864 3689999999999885 4999999999999999999887653
No 281
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-40 Score=332.65 Aligned_cols=223 Identities=33% Similarity=0.571 Sum_probs=185.9
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-C----CCCEEEECCEeCCCCCHHH
Q 006489 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-P----IKGKILLNGVPLVEISHEH 470 (643)
Q Consensus 397 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-p----~~G~I~idg~~i~~~~~~~ 470 (643)
++++|++.+|.... ...+++||||++++||++||||.|||||||+.++|+|+.+ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999887532 2468999999999999999999999999999999999998 3 5799999999999999875
Q ss_pred H---h-cccEEEccCCCC-Cc--ccHHHH----hhcCCCCCC-C----HHHHHHHHHHcCchH---HHHcCCCccccccc
Q 006489 471 L---H-RKISIVSQEPVL-FN--CSIEEN----IAYGCDGKA-S----SADIENAAKMANAHD---FISNFPEKYQTFVG 531 (643)
Q Consensus 471 l---r-~~i~~V~Q~~~L-f~--gTireN----I~~~~~~~~-~----~~~i~~al~~a~l~~---~i~~lp~G~~T~vg 531 (643)
+ | +.|++|+|||.- || -||.+- +.... .. + .++..++++.+++.+ .+.+.|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP-------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKSYP-------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC--------
Confidence 4 3 369999999863 33 244444 33321 12 1 346788899999875 456666
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhH-hhcCeEEEEe
Q 006489 532 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVS 608 (643)
Q Consensus 532 e~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i-~~aD~Iivl~ 608 (643)
..||||||||+.||-||..+|+++|-||||+|||..+.++|.+-|+++. .+.|+|+|||++..+ +-||+|+||.
T Consensus 152 ---helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMY 228 (316)
T COG0444 152 ---HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMY 228 (316)
T ss_pred ---cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEE
Confidence 5679999999999999999999999999999999999999999998876 488999999999987 5699999999
Q ss_pred CCEEEEEcChhHHhhc-CChHHHHH
Q 006489 609 DGEIVESGTHEELLSK-GGVYTALV 632 (643)
Q Consensus 609 ~G~Ive~G~~~eL~~~-~g~y~~l~ 632 (643)
+|+|||.|+.+++.++ .-.|.+.+
T Consensus 229 aG~iVE~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 229 AGRIVEEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred CcEEEEeCCHHHHhcCCCChHHHHH
Confidence 9999999999999875 55665433
No 282
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-41 Score=375.03 Aligned_cols=209 Identities=27% Similarity=0.367 Sum_probs=176.4
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 474 (643)
-|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 369999999999999999999999999999999999999999999999999976553 456889
Q ss_pred cEEEccCCCCCcc-cHHHHhhcCCCC---C-CC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 475 ISIVSQEPVLFNC-SIEENIAYGCDG---K-AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 475 i~~V~Q~~~Lf~g-TireNI~~~~~~---~-~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
|+||+|++.+|.. |++||+.++... . .+ ++++.++++..++.+. .......||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHHHHHHH
Confidence 9999999999874 999999886310 1 12 2345555665554322 2233467999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcCh
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTH 618 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~ 618 (643)
+|||||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.++.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999998764 4789999999999885 5999999999999977653
No 283
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-41 Score=381.05 Aligned_cols=221 Identities=29% Similarity=0.423 Sum_probs=180.3
Q ss_pred cEEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCC----------
Q 006489 396 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV---------- 464 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~---------- 464 (643)
-|+++|++++|+... ..++|+||||++++||++||||+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996421 246999999999999999999999999999999999999999999999998552
Q ss_pred CCCHH---HHh-cccEEEccCC--CCCc-ccHHHHhhcCCC--CCCCH----HHHHHHHHHcCchHHHHcCCCccccccc
Q 006489 465 EISHE---HLH-RKISIVSQEP--VLFN-CSIEENIAYGCD--GKASS----ADIENAAKMANAHDFISNFPEKYQTFVG 531 (643)
Q Consensus 465 ~~~~~---~lr-~~i~~V~Q~~--~Lf~-gTireNI~~~~~--~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vg 531 (643)
+.+.. .+| +.|+||+|+| .++. -||+|||.++.. ...+. +++.++++..++.+. +....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 22322 334 5799999998 5775 599999987421 01222 346667777766320 01122
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEe
Q 006489 532 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVS 608 (643)
Q Consensus 532 e~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~ 608 (643)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 33467999999999999999999999999999999999999999999988752 789999999999875 599999999
Q ss_pred CCEEEEEcChhHHhhc
Q 006489 609 DGEIVESGTHEELLSK 624 (643)
Q Consensus 609 ~G~Ive~G~~~eL~~~ 624 (643)
+|+|++.|+++++...
T Consensus 244 ~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 244 QGEAVETGSVEQIFHA 259 (623)
T ss_pred CCeecccCCHHHhhcC
Confidence 9999999999998753
No 284
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.5e-41 Score=329.06 Aligned_cols=195 Identities=26% Similarity=0.384 Sum_probs=169.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. .. +|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence 789999999964 368999999999999999999999999999999999999999999999998753 22 888999
Q ss_pred EEccCCCCC-cccHHHHhhcCCC-CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC
Q 006489 477 IVSQEPVLF-NCSIEENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 554 (643)
Q Consensus 477 ~V~Q~~~Lf-~gTireNI~~~~~-~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~ 554 (643)
|++|++.++ +.|++||+.+... ....++++.++++..++.++.. .| ...||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~----------~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-LP----------FGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-CC----------hhhcCHHHHHHHHHHHHHhcC
Confidence 999988775 6899999977421 1234567889999999876443 33 247999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHH-cCCCeEEEEccCchhHhhcCeEEEEeC
Q 006489 555 PRILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTVQSADTVAVVSD 609 (643)
Q Consensus 555 p~IliLDE~TSaLD~~te~~i~~~i~~~-~~~~TvI~VtHrl~~i~~aD~Iivl~~ 609 (643)
|+++||||||++||+.+.+.+.+.|+++ .+++|+|+|||++..++. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999999875 357899999999999998 99988854
No 285
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4.5e-41 Score=376.26 Aligned_cols=217 Identities=30% Similarity=0.505 Sum_probs=181.8
Q ss_pred cEEEEeEEEECCCC--------CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC
Q 006489 396 EVELDDVWFAYPSR--------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS 467 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~--------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~ 467 (643)
-|+++|++++|+.. .+.++|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|+++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 48999999999631 12469999999999999999999999999999999999984 8999999999998776
Q ss_pred HHH---HhcccEEEccCC--CCCc-ccHHHHhhcCCC---CCCC----HHHHHHHHHHcCch-HHHHcCCCcccccccCC
Q 006489 468 HEH---LHRKISIVSQEP--VLFN-CSIEENIAYGCD---GKAS----SADIENAAKMANAH-DFISNFPEKYQTFVGER 533 (643)
Q Consensus 468 ~~~---lr~~i~~V~Q~~--~Lf~-gTireNI~~~~~---~~~~----~~~i~~al~~a~l~-~~i~~lp~G~~T~vge~ 533 (643)
... +|++++||+|++ .+|. .|++||+.++.. ...+ ++++.++++..++. +.... .
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~ 422 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHR-----------Y 422 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhc-----------C
Confidence 543 477899999998 3665 699999987410 0011 23456677777664 23333 2
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCC
Q 006489 534 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDG 610 (643)
Q Consensus 534 G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G 610 (643)
..+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 357999999999999999999999999999999999999999999988753 789999999999886 59999999999
Q ss_pred EEEEEcChhHHhhc
Q 006489 611 EIVESGTHEELLSK 624 (643)
Q Consensus 611 ~Ive~G~~~eL~~~ 624 (643)
+|++.|+++++.+.
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999998764
No 286
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=9.5e-41 Score=373.68 Aligned_cols=221 Identities=30% Similarity=0.434 Sum_probs=182.1
Q ss_pred cEEEEeEEEECCCC-CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCCCCCHH
Q 006489 396 EVELDDVWFAYPSR-PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVEISHE 469 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~~~~ 469 (643)
-|+++|++++|++. ...++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999642 124799999999999999999999999999999999999987 799999999999887654
Q ss_pred H---Hh-cccEEEccCCC--CCc-ccHHHHhhcCC--CCCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 006489 470 H---LH-RKISIVSQEPV--LFN-CSIEENIAYGC--DGKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 536 (643)
Q Consensus 470 ~---lr-~~i~~V~Q~~~--Lf~-gTireNI~~~~--~~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~ 536 (643)
. +| ++|+||+|++. ++. -|+++|+.+.. .... .++++.++++.+++.+... .......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 3 34 57999999985 443 59999986421 0011 1345677888877754211 01223467
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHh-hcCeEEEEeCCEEE
Q 006489 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIV 613 (643)
Q Consensus 537 LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Iv 613 (643)
||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|+
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998864 3789999999999876 59999999999999
Q ss_pred EEcChhHHhhc
Q 006489 614 ESGTHEELLSK 624 (643)
Q Consensus 614 e~G~~~eL~~~ 624 (643)
+.|+++++.+.
T Consensus 237 ~~g~~~~~~~~ 247 (529)
T PRK15134 237 EQNRAATLFSA 247 (529)
T ss_pred EeCCHHHHhhC
Confidence 99999998753
No 287
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-40 Score=329.69 Aligned_cols=197 Identities=22% Similarity=0.309 Sum_probs=166.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-|+++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 4999999999964 3699999999999999999999999999999999999999999999999988753 345679
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCC--CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 476 SIVSQEPVLFNC-SIEENIAYGCD--GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 476 ~~V~Q~~~Lf~g-TireNI~~~~~--~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
+|++|++.+|.. |++||+.+... ....++...++++..++.+.. ++ ....||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYE-------DT----LVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhc-------cC----ChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 99999976421 111234455666666654332 22 23679999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeC
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSD 609 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~ 609 (643)
++|+++||||||++||+++.+.+.+.+++.. +++|+|++||+++.+. .||+|++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999998653 4789999999999884 6899999874
No 288
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=7e-41 Score=327.14 Aligned_cols=194 Identities=25% Similarity=0.370 Sum_probs=165.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+ ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 578999999964 36999999999999999999999999999999999999999999999999998765 45678999
Q ss_pred EEccCCCCCc-ccHHHHhhcCCCC-CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC
Q 006489 477 IVSQEPVLFN-CSIEENIAYGCDG-KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 554 (643)
Q Consensus 477 ~V~Q~~~Lf~-gTireNI~~~~~~-~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~ 554 (643)
|++|++.+|. .|++||+.++... ...++++.++++..++.++.... ...||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLP-----------AAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCC-----------hhhcCHHHHHHHHHHHHHhcC
Confidence 9999999886 7999999775321 11244688899999988765432 257999999999999999999
Q ss_pred CCEEEEecccCCCCHHHHHHHHHHHHHH-cCCCeEEEEccCchhHhhcCeEEE
Q 006489 555 PRILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTVQSADTVAV 606 (643)
Q Consensus 555 p~IliLDE~TSaLD~~te~~i~~~i~~~-~~~~TvI~VtHrl~~i~~aD~Iiv 606 (643)
|+++||||||++||+.+.+.+.+.|+++ .+++|+|+|||+...+.. |+++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE-ARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-eEEee
Confidence 9999999999999999999999999876 357899999999854433 55543
No 289
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=9.5e-41 Score=332.79 Aligned_cols=201 Identities=30% Similarity=0.378 Sum_probs=164.8
Q ss_pred EEEEeEEEECCCC----CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEC--CE--eCCCCCH
Q 006489 397 VELDDVWFAYPSR----PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLN--GV--PLVEISH 468 (643)
Q Consensus 397 I~~~~vsf~Y~~~----~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~id--g~--~i~~~~~ 468 (643)
|+++|++++|+.. ...++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 12469999999999999999999999999999999999999999999998 42 6666665
Q ss_pred HH---H-hcccEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 006489 469 EH---L-HRKISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 538 (643)
Q Consensus 469 ~~---l-r~~i~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LS 538 (643)
.. + ++.++|++|++.+|. -|++|||.+... ...+ ++++.++++..++.+.... .....||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWH----------LPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhh----------CCcccCC
Confidence 43 3 467999999999886 599999976310 0122 3345566666666543322 2356899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEE
Q 006489 539 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVV 607 (643)
Q Consensus 539 GGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl 607 (643)
||||||++|||||+++|+++||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+. .||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999998864 4789999999999885 69999876
No 290
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-41 Score=371.36 Aligned_cols=210 Identities=25% Similarity=0.340 Sum_probs=176.1
Q ss_pred EEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcccEE
Q 006489 399 LDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRKISI 477 (643)
Q Consensus 399 ~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~i~~ 477 (643)
++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. +.+|+.++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4689999964 369999999999999999999999999999999999999999999999999976654 456788999
Q ss_pred EccCCCCCc-ccHHHHhhcCCCC--C--CCHH----HHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 478 VSQEPVLFN-CSIEENIAYGCDG--K--ASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 478 V~Q~~~Lf~-gTireNI~~~~~~--~--~~~~----~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
|+|++.+|. .|++||+.++... . .+.+ ++.++++..++ +........+||||||||++||
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDI-----------DIDPRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCC-----------CCCccCchhhCCHHHHHHHHHH
Confidence 999998775 6999999876310 1 1222 23334444333 3333444678999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHh
Q 006489 549 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 549 RAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
|||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+.+++.
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 99999999999999999999999999999998764 4789999999999885 59999999999999999988763
No 291
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.7e-40 Score=376.23 Aligned_cols=201 Identities=29% Similarity=0.481 Sum_probs=172.3
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCC--CCEEEECCEeCCCCCHHHHhcccEEEccCCCCCc-cc
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI--KGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN-CS 488 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~--~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-gT 488 (643)
+.+|+|+|+++++||++||+||||||||||+++|+|+.+|. +|+|.+||.++. ...+++++||+|++.+|. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999885 899999999874 245678999999999995 69
Q ss_pred HHHHhhcCC----CCCCCHHH----HHHHHHHcCchHHHHcCCCcccccccCC-CCCCCHHHHHHHHHHHHHccCCCEEE
Q 006489 489 IEENIAYGC----DGKASSAD----IENAAKMANAHDFISNFPEKYQTFVGER-GVRLSGGQKQRVAIARALMMNPRILL 559 (643)
Q Consensus 489 ireNI~~~~----~~~~~~~~----i~~al~~a~l~~~i~~lp~G~~T~vge~-G~~LSGGQrQRialARAl~~~p~Ili 559 (643)
++||+.+.. +...++++ +.++++..+ |++..||.+|++ ...||||||||++|||||+++|+|++
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC-------ChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 999998752 11234433 333444433 344568999865 77999999999999999999999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchh--HhhcCeEEEEeCCEEEEEcChhHHhh
Q 006489 560 LDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST--VQSADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 560 LDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~--i~~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
||||||+||+.++..+.+.|+++. +++|+|+++|+++. .+.||+|++|++|++++.|+++++.+
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 999999999999999999998875 58999999999984 57799999999999999999999853
No 292
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-40 Score=337.03 Aligned_cols=215 Identities=25% Similarity=0.387 Sum_probs=175.5
Q ss_pred cEEEEeEEEECCCC-----------------CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEE
Q 006489 396 EVELDDVWFAYPSR-----------------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILL 458 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~-----------------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~i 458 (643)
+|+++||+..|... ...++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47788876665431 1346899999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcccEEEccCCCCCc-ccHHHHhhcCCC-CCCCHHHH----HHHHHHcCchHHHHcCCCcccccccC
Q 006489 459 NGVPLVEISHEHLHRKISIVSQEPVLFN-CSIEENIAYGCD-GKASSADI----ENAAKMANAHDFISNFPEKYQTFVGE 532 (643)
Q Consensus 459 dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-gTireNI~~~~~-~~~~~~~i----~~al~~a~l~~~i~~lp~G~~T~vge 532 (643)
+| .+++++|++.+++ .|++||+.++.. ...+.++. .++++..++.+++. .
T Consensus 84 ~g-------------~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~ 139 (264)
T PRK13546 84 NG-------------EVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIY-----------Q 139 (264)
T ss_pred CC-------------EEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------C
Confidence 99 4678889887764 699999976411 12333333 34455555554433 3
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCC
Q 006489 533 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDG 610 (643)
Q Consensus 533 ~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G 610 (643)
....||||||||++||||++++|+||||||||++||+.+.+.+.+.+.++. .++|+|+|||++..+.. ||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 456899999999999999999999999999999999999999999998764 47899999999999864 9999999999
Q ss_pred EEEEEcChhHHhhcCChHHHHHHH
Q 006489 611 EIVESGTHEELLSKGGVYTALVKR 634 (643)
Q Consensus 611 ~Ive~G~~~eL~~~~g~y~~l~~~ 634 (643)
+|++.|+++++.+....|.+.+..
T Consensus 220 ~i~~~g~~~~~~~~~~~~~~~~~~ 243 (264)
T PRK13546 220 KLKDYGELDDVLPKYEAFLNDFKK 243 (264)
T ss_pred EEEEeCCHHHHHHHhHHHHHHHHh
Confidence 999999999998875555555443
No 293
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.8e-40 Score=354.68 Aligned_cols=228 Identities=29% Similarity=0.460 Sum_probs=188.7
Q ss_pred cEEEEeEEEECCCCCC-CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCC----CCEEEECCEeCCCCCHHH
Q 006489 396 EVELDDVWFAYPSRPN-HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI----KGKILLNGVPLVEISHEH 470 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~----~G~I~idg~~i~~~~~~~ 470 (643)
-++++|++..|..... ..+++||||+|.+||.+||||.|||||||++++|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999998875422 25999999999999999999999999999999999999988 899999999999998765
Q ss_pred Hh----cccEEEccCCC-CCcc--cHHHHhh----cCCC--CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCC
Q 006489 471 LH----RKISIVSQEPV-LFNC--SIEENIA----YGCD--GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 537 (643)
Q Consensus 471 lr----~~i~~V~Q~~~-Lf~g--TireNI~----~~~~--~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~L 537 (643)
+| +.|+||+|+|+ .+|. ||.+-|. .... .+.-.++..+.++.+++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 53 56999999987 5654 6666553 2211 01123456778888888665444 1123678
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHh-hcCeEEEEeCCEEEE
Q 006489 538 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVE 614 (643)
Q Consensus 538 SGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive 614 (643)
|||||||+.||+||..+|++||+||||+|||+.+++.|.+.|+++. .+.++|+|||++..+. -||+|+||++|+|||
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998876 5889999999999985 599999999999999
Q ss_pred EcChhHHhhc-CChHHHHH
Q 006489 615 SGTHEELLSK-GGVYTALV 632 (643)
Q Consensus 615 ~G~~~eL~~~-~g~y~~l~ 632 (643)
.|+.++++++ .-.|.+-.
T Consensus 236 ~G~~~~i~~~p~hpYT~~L 254 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGL 254 (539)
T ss_pred ecCHHHHHhccCCcccHHH
Confidence 9999999975 55665433
No 294
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3e-41 Score=382.65 Aligned_cols=217 Identities=23% Similarity=0.412 Sum_probs=181.7
Q ss_pred cEEEEeEEEECCCC------CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEECCEeCCCC
Q 006489 396 EVELDDVWFAYPSR------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI---KGKILLNGVPLVEI 466 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~ 466 (643)
+++|.++. +++.. .++++|+|+|+++++||.+||+||||||||||+++|+|..+|. +|+|.+||.++.
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 46666665 44322 1467999999999999999999999999999999999999885 899999999875
Q ss_pred CHHHHhcccEEEccCCCCCc-ccHHHHhhcCCC----CCCCHHH----HHHHHHHcCchHHHHcCCCcccccccCC--CC
Q 006489 467 SHEHLHRKISIVSQEPVLFN-CSIEENIAYGCD----GKASSAD----IENAAKMANAHDFISNFPEKYQTFVGER--GV 535 (643)
Q Consensus 467 ~~~~lr~~i~~V~Q~~~Lf~-gTireNI~~~~~----~~~~~~~----i~~al~~a~l~~~i~~lp~G~~T~vge~--G~ 535 (643)
...+|+.++||+|++++|+ .||+|||.|+.. ...+.++ +.++++..+ |++..||.||+. +.
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~ 165 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-------LRKCANTRIGVPGRVK 165 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-------chhcCcCccCCCCCCC
Confidence 4678899999999999995 699999988632 1223232 333333332 445689999985 48
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCch--hHhhcCeEEEEeCCEE
Q 006489 536 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLS--TVQSADTVAVVSDGEI 612 (643)
Q Consensus 536 ~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~--~i~~aD~Iivl~~G~I 612 (643)
.||||||||++|||||+++|+|++||||||+||+.+...+.+.++++. +++|+|+++|+++ ..+.+|+|++|++|++
T Consensus 166 ~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~ 245 (617)
T TIGR00955 166 GLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRV 245 (617)
T ss_pred CcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeE
Confidence 999999999999999999999999999999999999999999998875 4899999999996 4688999999999999
Q ss_pred EEEcChhHHhh
Q 006489 613 VESGTHEELLS 623 (643)
Q Consensus 613 ve~G~~~eL~~ 623 (643)
+++|+++++.+
T Consensus 246 v~~G~~~~~~~ 256 (617)
T TIGR00955 246 AYLGSPDQAVP 256 (617)
T ss_pred EEECCHHHHHH
Confidence 99999998753
No 295
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.3e-40 Score=370.46 Aligned_cols=212 Identities=28% Similarity=0.417 Sum_probs=176.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC--CCCEEEECCEeCCCCCHHH-Hhc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP--IKGKILLNGVPLVEISHEH-LHR 473 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p--~~G~I~idg~~i~~~~~~~-lr~ 473 (643)
|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...+... .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999964 3699999999999999999999999999999999999987 7999999999998877554 467
Q ss_pred ccEEEccCCCCCc-ccHHHHhhcCCCC-----CCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 474 KISIVSQEPVLFN-CSIEENIAYGCDG-----KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~-gTireNI~~~~~~-----~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
.|+||+|++.+|. -|++||+.++... ..+. +++.++++..++.+.. .+. ....|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~----~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------VTR----PVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------ccC----chhhCCHHHHH
Confidence 8999999998886 5999999876320 0111 2344455555443211 112 23579999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHH
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL 621 (643)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999999998764 47899999999999864 999999999999999987664
No 296
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.3e-40 Score=331.07 Aligned_cols=195 Identities=29% Similarity=0.454 Sum_probs=164.8
Q ss_pred EEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCC---CcccHHHHhhcC
Q 006489 420 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVL---FNCSIEENIAYG 496 (643)
Q Consensus 420 l~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~L---f~gTireNI~~~ 496 (643)
|+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. ..+++++|++|++.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998764 357789999999976 458999999775
Q ss_pred CC---------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCC
Q 006489 497 CD---------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSAL 567 (643)
Q Consensus 497 ~~---------~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaL 567 (643)
.. ...+++++.++++.+++.++.... ...||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----------VGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 21 011234577888888886654332 3459999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhcCChHHHHH
Q 006489 568 DAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKGGVYTALV 632 (643)
Q Consensus 568 D~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~ 632 (643)
|+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|+++ +|++++.|+++++.+. ..+.+++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~-~~~~~~~ 209 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP-APWMTTF 209 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh-HHHHHHh
Confidence 9999999999998875 4789999999999875 59999999 7999999999998664 3444444
No 297
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.6e-40 Score=371.24 Aligned_cols=222 Identities=25% Similarity=0.399 Sum_probs=178.9
Q ss_pred cEEEEeEEEECCC--CCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEC-CEe---CCCCC--
Q 006489 396 EVELDDVWFAYPS--RPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLN-GVP---LVEIS-- 467 (643)
Q Consensus 396 ~I~~~~vsf~Y~~--~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~id-g~~---i~~~~-- 467 (643)
-|+++|++++|++ ....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4999999999963 112469999999999999999999999999999999999999999999996 643 33333
Q ss_pred -HHHHhcccEEEccCCCCCc-ccHHHHhhcCCCCCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHH
Q 006489 468 -HEHLHRKISIVSQEPVLFN-CSIEENIAYGCDGKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 541 (643)
Q Consensus 468 -~~~lr~~i~~V~Q~~~Lf~-gTireNI~~~~~~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 541 (643)
...+|++|+||||++.+|+ -|++||+.+...... .++++.++++..++.+.- .+.........|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhhCCHHH
Confidence 2346778999999998886 599999976311011 123456667776664200 0001122346799999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcCh
Q 006489 542 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTH 618 (643)
Q Consensus 542 rQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~ 618 (643)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999987743 789999999999986 5999999999999999999
Q ss_pred hHHhh
Q 006489 619 EELLS 623 (643)
Q Consensus 619 ~eL~~ 623 (643)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 88754
No 298
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-40 Score=353.53 Aligned_cols=213 Identities=26% Similarity=0.360 Sum_probs=175.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.++++|++|+|++...+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999765345799999999999999999999999999999999999999999999999651
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-CCCCHHH----HHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCD-GKASSAD----IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~-~~~~~~~----i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
++.+.+.+++ .|++||+.+... ...++++ +.++++.+++.+++... ...||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~-----------~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQP-----------VKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCC-----------cccCCHHHHHHHHHHH
Confidence 2333444443 599999976421 1233333 45677777777665443 4679999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHhhcCCh
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSKGGV 627 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~~~~g~ 627 (643)
||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++...-..
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~ 236 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDE 236 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHH
Confidence 9999999999999999999999999999998764 47899999999999865 999999999999999999998876444
Q ss_pred HHHHH
Q 006489 628 YTALV 632 (643)
Q Consensus 628 y~~l~ 632 (643)
|.+.+
T Consensus 237 ~~~~~ 241 (549)
T PRK13545 237 FLKKY 241 (549)
T ss_pred HHHHH
Confidence 54433
No 299
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=3.6e-40 Score=375.49 Aligned_cols=216 Identities=31% Similarity=0.459 Sum_probs=187.1
Q ss_pred cEEEEeEEEECCCCC-CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH---
Q 006489 396 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL--- 471 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l--- 471 (643)
.++++|++++|++.. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999997421 2469999999999999999999999999999999999999999999999999999887664
Q ss_pred -hcccEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHH
Q 006489 472 -HRKISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 472 -r~~i~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
|+.++|++|++.+|+ .|+.||+.+... ...+ ++++.++++.+++.+.+... ...|||||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~-----------~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQ-----------PSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCC-----------cccCCHHHHHH
Confidence 678999999999996 599999986421 0111 23455666666665554444 45899999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHh
Q 006489 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 545 ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
++|||||+++|+++||||||++||+++.+.+.+.|+++. +++|+|+|||+++.++.||++++|++|+++++|+.+|..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999998875 479999999999999999999999999999999999875
No 300
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2e-40 Score=323.00 Aligned_cols=190 Identities=23% Similarity=0.360 Sum_probs=163.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ +.++ ++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 789999999963 3455 599999999999999999999999999999999999999999999887643 35699
Q ss_pred EEccCCCC-CcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCC
Q 006489 477 IVSQEPVL-FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 555 (643)
Q Consensus 477 ~V~Q~~~L-f~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p 555 (643)
|++|++.+ |+.|++|||.++......+++++++++.+++.++.. ....+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCC
Confidence 99998765 679999999886431123556788888888866543 345789999999999999999999
Q ss_pred CEEEEecccCCCCHHHHHHHHHHHHHH-cCCCeEEEEccCchhHhhcCeEE
Q 006489 556 RILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTVQSADTVA 605 (643)
Q Consensus 556 ~IliLDE~TSaLD~~te~~i~~~i~~~-~~~~TvI~VtHrl~~i~~aD~Ii 605 (643)
+++||||||++||+.+.+.+.+.|+.. .+++|+|+|||+++.++.||.|.
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999999743 46799999999999999999874
No 301
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2e-40 Score=370.61 Aligned_cols=213 Identities=27% Similarity=0.481 Sum_probs=176.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCC--CCCCCEEEEC---------------
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY--DPIKGKILLN--------------- 459 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~--~p~~G~I~id--------------- 459 (643)
|+++|++++|++ .++|+|+||++++|++++|+|+||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999963 36999999999999999999999999999999999996 7999999997
Q ss_pred --------CEeCC-------CCC---HHHHhcccEEEccC-CCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcC
Q 006489 460 --------GVPLV-------EIS---HEHLHRKISIVSQE-PVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMAN 514 (643)
Q Consensus 460 --------g~~i~-------~~~---~~~lr~~i~~V~Q~-~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~ 514 (643)
|.++. ..+ ...+|+.++||+|+ +.+|+ -|++||+.++.. ...+ ++++.++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 33331 111 13467889999998 67776 599999987421 0122 235667777777
Q ss_pred chHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEc
Q 006489 515 AHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIA 592 (643)
Q Consensus 515 l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~Vt 592 (643)
+.+..... -.+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|+||
T Consensus 158 l~~~~~~~-----------~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRITHI-----------ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred ChhhhhcC-----------cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 76554332 367999999999999999999999999999999999999999999988743 78999999
Q ss_pred cCchhHh-hcCeEEEEeCCEEEEEcChhHHhh
Q 006489 593 HRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 593 Hrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
|+++.+. .||+|++|++|+|++.|+++++.+
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 9999986 599999999999999999988765
No 302
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.6e-40 Score=322.53 Aligned_cols=175 Identities=31% Similarity=0.484 Sum_probs=150.2
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCC--CCHHHHhcccEEEccCC--CCCcc
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE--ISHEHLHRKISIVSQEP--VLFNC 487 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~--~~~~~lr~~i~~V~Q~~--~Lf~g 487 (643)
.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. .....+++.++|++|+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999999852 23456788999999998 57889
Q ss_pred cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEec
Q 006489 488 SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDE 562 (643)
Q Consensus 488 TireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE 562 (643)
|++||+.++.. ...+ ++++.++++..++.++....| ..||||||||++|||||+++|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT-----------HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987521 1122 235677788888876655443 5799999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchh
Q 006489 563 ATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST 597 (643)
Q Consensus 563 ~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~ 597 (643)
||++||+.+.+.+.+.|+++. +++|+|+|||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998874 47899999999864
No 303
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.7e-40 Score=296.68 Aligned_cols=209 Identities=30% Similarity=0.471 Sum_probs=179.6
Q ss_pred cEEEEeEEEECCCC-CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---H
Q 006489 396 EVELDDVWFAYPSR-PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH---L 471 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---l 471 (643)
-|++++++..-++. .+-.+|++|+|.|++||.+|||||||||||||+-+|.|+-+|++|+|++.|+++..++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 37888888876543 2346899999999999999999999999999999999999999999999999999998654 4
Q ss_pred h-cccEEEccCCCCC-cccHHHHhhcCCC---C-CC-CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHH
Q 006489 472 H-RKISIVSQEPVLF-NCSIEENIAYGCD---G-KA-SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 472 r-~~i~~V~Q~~~Lf-~gTireNI~~~~~---~-~~-~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
| +++++|+|...|. +-|-.||+.+-.. + .. ..+.-.+.++.++|.+-+...| ..||||++||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 4 5799999999987 6899999865311 0 11 1223567788888888887777 5789999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhhcCeEEEEeCCEEEEE
Q 006489 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 615 (643)
Q Consensus 545 ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~ 615 (643)
+|||||+...|+||+-||||-+||.+|-.+|.+-+-.+- .+.|.|+|||++....+|||++-|.+|+|++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999885543 58899999999999999999999999999863
No 304
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-40 Score=305.13 Aligned_cols=214 Identities=29% Similarity=0.492 Sum_probs=187.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+.+|+|++-.+ +.+|+++||++++||.+||+||||+|||||+|.|.|++.|++|++.++|+++.++++.++.++-+
T Consensus 2 i~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 788999998764 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCC-CcccHHHHhhcCCCC-----CCCHHH--HHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 477 IVSQEPVL-FNCSIEENIAYGCDG-----KASSAD--IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 477 ~V~Q~~~L-f~gTireNI~~~~~~-----~~~~~~--i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
+.||+..| |+-|++|-+.+|.-. +..+++ ..+++..+++..+-.. .=..|||||+||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----------~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-----------DYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-----------chhhcCchHHHHHHHH
Confidence 99999998 999999999999631 122344 6678888877654322 2357999999999999
Q ss_pred HHHccC------CCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhH
Q 006489 549 RALMMN------PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 549 RAl~~~------p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~e 620 (643)
|.|.+- +++|+||||||+||..-.+.+.+..+++. .+..|+.|=|+|+.. +.||+|++|.+||++..|+++|
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 999853 35889999999999999999999988875 578999999999975 6899999999999999999999
Q ss_pred Hhhc
Q 006489 621 LLSK 624 (643)
Q Consensus 621 L~~~ 624 (643)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 8754
No 305
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-40 Score=367.77 Aligned_cols=217 Identities=22% Similarity=0.400 Sum_probs=176.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC-CCCCEEEECCEeCCCCCH-HHHhc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-PIKGKILLNGVPLVEISH-EHLHR 473 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-p~~G~I~idg~~i~~~~~-~~lr~ 473 (643)
.|+++|++++|+.....++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++...+. +.++.
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953113469999999999999999999999999999999999998 599999999999876543 45677
Q ss_pred ccEEEccCC---CCC-cccHHHHhhcCCCCC------CCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCH
Q 006489 474 KISIVSQEP---VLF-NCSIEENIAYGCDGK------ASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 539 (643)
Q Consensus 474 ~i~~V~Q~~---~Lf-~gTireNI~~~~~~~------~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSG 539 (643)
.++||+|++ .+| +-|+.||+.++.... .+. +++.++++.+++.+ -........|||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSg 408 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT----------ASPELAIARLSG 408 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC----------CCcccccccCCH
Confidence 899999996 366 469999998752100 121 23444444444421 012334568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcC
Q 006489 540 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 617 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~ 617 (643)
|||||++||||++.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||++++|++|+|+..|+
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~ 488 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLI 488 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998764 4789999999999885 599999999999999998
Q ss_pred hhHHh
Q 006489 618 HEELL 622 (643)
Q Consensus 618 ~~eL~ 622 (643)
.+++.
T Consensus 489 ~~~~~ 493 (506)
T PRK13549 489 NHNLT 493 (506)
T ss_pred cccCC
Confidence 88763
No 306
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-40 Score=322.48 Aligned_cols=194 Identities=34% Similarity=0.552 Sum_probs=170.3
Q ss_pred EEEEeEEEECCCCC------CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH
Q 006489 397 VELDDVWFAYPSRP------NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH 470 (643)
Q Consensus 397 I~~~~vsf~Y~~~~------~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~ 470 (643)
++++|++..|+... ...+++||||+|++||.++|||.|||||||+.++|+|+++|++|+|+++|.|+..++
T Consensus 5 l~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--- 81 (268)
T COG4608 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--- 81 (268)
T ss_pred EEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc---
Confidence 78999999997532 136899999999999999999999999999999999999999999999999987776
Q ss_pred HhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchH-HHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 471 LHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHD-FISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 471 lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~-~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
. +...+++.+.++.+++.+ +....| ..||||||||++|||
T Consensus 82 ---------------------------~-~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IAR 122 (268)
T COG4608 82 ---------------------------K-EERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIAR 122 (268)
T ss_pred ---------------------------h-hHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHH
Confidence 1 233567999999999876 566777 567999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHhhc-C
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK-G 625 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~~~-~ 625 (643)
||.-+|+++++||||||||.-.++.|.+-+.++. .+-|.++|||+++.++. ||+|.||..|+|||.|+-+++.++ .
T Consensus 123 ALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~ 202 (268)
T COG4608 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPL 202 (268)
T ss_pred HHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCC
Confidence 9999999999999999999999999999887653 47899999999999976 999999999999999999999874 5
Q ss_pred ChHHHHH
Q 006489 626 GVYTALV 632 (643)
Q Consensus 626 g~y~~l~ 632 (643)
-.|.+..
T Consensus 203 HpYTk~L 209 (268)
T COG4608 203 HPYTKAL 209 (268)
T ss_pred CHHHHHH
Confidence 5675433
No 307
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=6e-40 Score=326.43 Aligned_cols=195 Identities=26% Similarity=0.343 Sum_probs=157.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
+.++|++.+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... ....+
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~ 94 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG 94 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc
Confidence 667788888864 4699999999999999999999999999999999999999999999999876421 11111
Q ss_pred EEccCCCCCcccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 551 (643)
Q Consensus 477 ~V~Q~~~Lf~gTireNI~~~~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl 551 (643)
...+.|++||+.++.. ...+. +++.++++..++.+.. ++. ...||||||||++||||+
T Consensus 95 ------~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LSgG~~qrv~laral 157 (224)
T cd03220 95 ------FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-------DLP----VKTYSSGMKARLAFAIAT 157 (224)
T ss_pred ------CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-------hCC----hhhCCHHHHHHHHHHHHH
Confidence 1235799999987521 01222 2345555555554433 333 357999999999999999
Q ss_pred ccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEc
Q 006489 552 MMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 616 (643)
Q Consensus 552 ~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G 616 (643)
+++|+++||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999998764 3689999999999885 59999999999998765
No 308
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-40 Score=316.95 Aligned_cols=214 Identities=29% Similarity=0.496 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH-hccc
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HRKI 475 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~i 475 (643)
++.++++.+|.+ -.+++||||++++||.++|+||+||||||++|+|.|+|+|++|+|.++|.||..+++... |.-|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 578999999975 368999999999999999999999999999999999999999999999999999998776 5559
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCCCC-----------C--C----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCC
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCDGK-----------A--S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 537 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~~~-----------~--~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~L 537 (643)
+-.+|.+.+|+ -|+.||+..+.-.. + + .++..+.|+.++|.+ .-.+...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~-----------~a~~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGE-----------LADRPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCch-----------hhcchhhcC
Confidence 99999999995 59999998862100 1 1 122334444455444 334556789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEE
Q 006489 538 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVE 614 (643)
Q Consensus 538 SGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive 614 (643)
|+||+.|+.|||||..+|++|+||||.++|.+.....+.+.|+++.+ +.|+++|-|++..+. -||+|+||+.|+++.
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999999999988888899988874 489999999999986 599999999999999
Q ss_pred EcChhHHhhc
Q 006489 615 SGTHEELLSK 624 (643)
Q Consensus 615 ~G~~~eL~~~ 624 (643)
+|+|+|..++
T Consensus 231 eG~P~eV~~d 240 (250)
T COG0411 231 EGTPEEVRNN 240 (250)
T ss_pred cCCHHHHhcC
Confidence 9999998765
No 309
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.9e-37 Score=376.58 Aligned_cols=218 Identities=18% Similarity=0.297 Sum_probs=188.5
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
..|+++|++++|++. ..++++|+||+|++||++||+|+||||||||+|+|+|+.+|++|+|.++|.++.. +....|++
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 359999999999753 3579999999999999999999999999999999999999999999999999965 45667889
Q ss_pred cEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 475 ISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 475 i~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
|||+||++.+++ -|++||+.+... ...+ ++.+.++++.+++.++.++.+ ..||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~-----------~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA-----------GTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 999999999985 699999976311 1122 233556778888876644433 56899999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhcC
Q 006489 549 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKG 625 (643)
Q Consensus 549 RAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~~ 625 (643)
|||+.+|+|++||||||+||+.+++.+.+.|+++. +++|+|++||+++.++ .||+|++|++|++++.|+.++|.++-
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 99999999999999999999999999999998864 5899999999999986 59999999999999999999997653
No 310
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.2e-39 Score=393.53 Aligned_cols=217 Identities=21% Similarity=0.383 Sum_probs=189.9
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
..|+++|++++|++. ++++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +...+|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 359999999999642 3579999999999999999999999999999999999999999999999999975 56678999
Q ss_pred cEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH
Q 006489 475 ISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 548 (643)
Q Consensus 475 i~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA 548 (643)
++|+||++.+|+ -|++|||.++.. ...+ ++++.+.++..++.+... ....+||||||||++||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~-----------~~~~~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN-----------EEAQDLSGGMQRKLSVA 1073 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHH
Confidence 999999999996 599999987521 1122 244667777777655433 34577999999999999
Q ss_pred HHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 549 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 549 RAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|||+.+|+|+|||||||+||+.+.+.+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+.++|.++
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999999878999999999999986 5999999999999999999999775
No 311
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.6e-39 Score=324.08 Aligned_cols=222 Identities=34% Similarity=0.537 Sum_probs=187.9
Q ss_pred cEEEEeEEEECCCCC--------CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC
Q 006489 396 EVELDDVWFAYPSRP--------NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS 467 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~--------~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~ 467 (643)
-++.+|+...||-+. ...+.++|||+.++||+++|||.||||||||-.+|+|+.++. |+|.++|.++..++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 488999988887431 234789999999999999999999999999999999998765 99999999999998
Q ss_pred HHH---HhcccEEEccCCCC-Cc--ccHHHHhhcC----CCCCCC----HHHHHHHHHHcCchHH-HHcCCCcccccccC
Q 006489 468 HEH---LHRKISIVSQEPVL-FN--CSIEENIAYG----CDGKAS----SADIENAAKMANAHDF-ISNFPEKYQTFVGE 532 (643)
Q Consensus 468 ~~~---lr~~i~~V~Q~~~L-f~--gTireNI~~~----~~~~~~----~~~i~~al~~a~l~~~-i~~lp~G~~T~vge 532 (643)
.++ +|+++-+|+|||+= ++ .||.+-|.=| .| ..+ ++++.+|++.++++.. ....|
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RYP--------- 424 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRYP--------- 424 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcCC---------
Confidence 766 68899999999982 22 4776666443 22 333 4568899999999865 34555
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHH--cCCCeEEEEccCchhHhh-cCeEEEEeC
Q 006489 533 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSL--MKGRTVLVIAHRLSTVQS-ADTVAVVSD 609 (643)
Q Consensus 533 ~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~--~~~~TvI~VtHrl~~i~~-aD~Iivl~~ 609 (643)
..+|||||||||||||+.-+|++++|||||||||-.-.+.|.+-++++ ..+-+=++|+|+|..++. ||+|+||++
T Consensus 425 --hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 425 --HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred --cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 567999999999999999999999999999999999999999999765 357799999999999975 999999999
Q ss_pred CEEEEEcChhHHhhc-CChHHH
Q 006489 610 GEIVESGTHEELLSK-GGVYTA 630 (643)
Q Consensus 610 G~Ive~G~~~eL~~~-~g~y~~ 630 (643)
|+|||+|+-+++.++ +..|.+
T Consensus 503 GkiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 503 GKIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred CEEeeeCCHHHHhcCCCcHHHH
Confidence 999999999999875 666753
No 312
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-40 Score=297.97 Aligned_cols=215 Identities=33% Similarity=0.502 Sum_probs=184.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCC----------
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE---------- 465 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~---------- 465 (643)
.++++|++.+|... .+|++|||+.++|+.|.|+|.|||||||+++|+-=+-.|++|.|.++|.+|+-
T Consensus 6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 58999999999754 59999999999999999999999999999999999999999999999998742
Q ss_pred CC---HHHHhcccEEEccCCCCCc-ccHHHHhhcC------CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCC
Q 006489 466 IS---HEHLHRKISIVSQEPVLFN-CSIEENIAYG------CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGV 535 (643)
Q Consensus 466 ~~---~~~lr~~i~~V~Q~~~Lf~-gTireNI~~~------~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~ 535 (643)
.+ .+.+|.+.++|+|+.-|.+ .|+.||+.=. .+..---++-+..+.++++.+--+..| .
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----------~ 151 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------A 151 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------c
Confidence 22 4557999999999999984 8999998533 110011233455677888888766666 6
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCCEEE
Q 006489 536 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIV 613 (643)
Q Consensus 536 ~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Iv 613 (643)
.|||||.||.+|||||.-+|+++++|||||||||+---.+.+.++++. .++|.++|||-..+.++ +.+|+.+++|.|-
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE 231 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE 231 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec
Confidence 789999999999999999999999999999999998888888888765 69999999999999987 7899999999999
Q ss_pred EEcChhHHhhc
Q 006489 614 ESGTHEELLSK 624 (643)
Q Consensus 614 e~G~~~eL~~~ 624 (643)
|+|+++++..+
T Consensus 232 E~G~P~qvf~n 242 (256)
T COG4598 232 EEGPPEQVFGN 242 (256)
T ss_pred ccCChHHHhcC
Confidence 99999999864
No 313
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=362.11 Aligned_cols=210 Identities=21% Similarity=0.348 Sum_probs=171.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 474 (643)
.|+++|+++.|. .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 499999999762 28999999999999999999999999999999999999999999999999876554 456788
Q ss_pred cEEEccCC---CCCc-ccHHHHhhcCCCC---------C-CCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 006489 475 ISIVSQEP---VLFN-CSIEENIAYGCDG---------K-ASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVR 536 (643)
Q Consensus 475 i~~V~Q~~---~Lf~-gTireNI~~~~~~---------~-~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~ 536 (643)
|+||||++ .+|. -|++||+.++... . .+. +++.++++..++.. +-.+ ..-..
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~----~~~~~ 409 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC------HSVN----QNITE 409 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC------CCcc----Ccccc
Confidence 99999984 5775 5999999875210 0 011 22344444444320 1122 23456
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEE
Q 006489 537 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVE 614 (643)
Q Consensus 537 LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive 614 (643)
||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998763 4789999999999874 699999999999999
Q ss_pred EcChhH
Q 006489 615 SGTHEE 620 (643)
Q Consensus 615 ~G~~~e 620 (643)
.++..+
T Consensus 490 ~~~~~~ 495 (510)
T PRK09700 490 ILTNRD 495 (510)
T ss_pred EecCcc
Confidence 887633
No 314
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3e-40 Score=304.28 Aligned_cols=213 Identities=27% Similarity=0.482 Sum_probs=181.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH-hcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~ 474 (643)
.+..+|+..+|.. .+|++++||++++||.|++.||+|+||||....+.|+.+|++|.|.+||.|++.++.... |--
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 4788999999965 479999999999999999999999999999999999999999999999999999997665 445
Q ss_pred cEEEccCCCCCc-ccHHHHhhcCCCCCCCH---------HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHH
Q 006489 475 ISIVSQEPVLFN-CSIEENIAYGCDGKASS---------ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 475 i~~V~Q~~~Lf~-gTireNI~~~~~~~~~~---------~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
|+|+||||.+|. -||+|||...-+ ..+ +++.+.++..++.. .-...|..||||||.|
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE--~~~~d~~~~~~~~~l~~LL~ef~i~h-----------lr~~~a~sLSGGERRR 147 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLE--IREKDLKKAERKEELDALLEEFHITH-----------LRDSKAYSLSGGERRR 147 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHh--hhhcchhHHHHHHHHHHHHHHhchHH-----------HhcCcccccccchHHH
Confidence 999999999996 599999977532 222 12333444433332 2234589999999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCc-hhHhhcCeEEEEeCCEEEEEcChhHHh
Q 006489 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRL-STVQSADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 545 ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl-~~i~~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
+.|||||..+|+.++||||++++||.+-..|++.+..+. ++--|++.-|.. +|+.-|||.+++.+|+|..+|+++|+.
T Consensus 148 ~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 148 VEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHh
Confidence 999999999999999999999999999999999988775 356677777887 478999999999999999999999998
Q ss_pred hc
Q 006489 623 SK 624 (643)
Q Consensus 623 ~~ 624 (643)
++
T Consensus 228 ~n 229 (243)
T COG1137 228 NN 229 (243)
T ss_pred cC
Confidence 75
No 315
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=3.3e-39 Score=337.99 Aligned_cols=182 Identities=36% Similarity=0.603 Sum_probs=158.7
Q ss_pred EECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcc-cHHHHhhcCCC-CCCC----H
Q 006489 430 LVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC-SIEENIAYGCD-GKAS----S 503 (643)
Q Consensus 430 ivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-TireNI~~~~~-~~~~----~ 503 (643)
|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++|+|++|++.+|+. |++||+.++.. ...+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987664 46789999999999965 99999998631 0122 2
Q ss_pred HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc
Q 006489 504 ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM 583 (643)
Q Consensus 504 ~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~ 583 (643)
+++.++++..++.++....| ..||||||||++|||||+++|+++|||||||+||+.+.+.+.+.|+++.
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~-----------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKP-----------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhcCCh-----------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 45677888888776655544 5799999999999999999999999999999999999999999998875
Q ss_pred C--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 584 K--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 584 ~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++.+.
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 3 789999999999875 5999999999999999999999864
No 316
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.6e-39 Score=358.08 Aligned_cols=215 Identities=21% Similarity=0.353 Sum_probs=173.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-CCCEEEECCEeCCCCCH-HHHhc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKILLNGVPLVEISH-EHLHR 473 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-~~G~I~idg~~i~~~~~-~~lr~ 473 (643)
-|+++|++++|+......+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 49999999999532124699999999999999999999999999999999999985 89999999999875543 56788
Q ss_pred ccEEEccCC---CCCc-ccHHHHhhcCCCC------CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCH
Q 006489 474 KISIVSQEP---VLFN-CSIEENIAYGCDG------KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 539 (643)
Q Consensus 474 ~i~~V~Q~~---~Lf~-gTireNI~~~~~~------~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSG 539 (643)
+|+||+|++ .+|. .|++||+.++... ..+ ++++.++++..++.+. ........|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA----------SPFLPIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC----------CccCccccCCH
Confidence 999999996 4665 6999999875210 011 1234455555544210 11223457999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcC
Q 006489 540 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 617 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~ 617 (643)
|||||++||||++++|++|||||||++||+.+...+.+.|+++. ++.|+|+|||+++.+. .||+|++|++|+|+..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999988764 4789999999999886 599999999999998775
Q ss_pred hhH
Q 006489 618 HEE 620 (643)
Q Consensus 618 ~~e 620 (643)
-++
T Consensus 487 ~~~ 489 (500)
T TIGR02633 487 NHA 489 (500)
T ss_pred ccc
Confidence 544
No 317
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-39 Score=357.47 Aligned_cols=204 Identities=23% Similarity=0.333 Sum_probs=175.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. .++
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 5999999999964 36999999999999999999999999999999999999999999999883 479
Q ss_pred EEEccCCC--CC-cccHHHHhhcCCCCCCCHHHHHHHHHHcCch-HHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH
Q 006489 476 SIVSQEPV--LF-NCSIEENIAYGCDGKASSADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 551 (643)
Q Consensus 476 ~~V~Q~~~--Lf-~gTireNI~~~~~~~~~~~~i~~al~~a~l~-~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl 551 (643)
+|++|++. ++ +.|++||+.+......+++++.++++..++. +... .....||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIK-----------KSVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhc-----------CcccccCHHHHHHHHHHHHH
Confidence 99999974 44 3699999975421123456678888888773 3322 23468999999999999999
Q ss_pred ccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEEEeCCEEE-EEcChhHHhhcCC
Q 006489 552 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIV-ESGTHEELLSKGG 626 (643)
Q Consensus 552 ~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Iv-e~G~~~eL~~~~g 626 (643)
+++|+||||||||++||+.+...+.+.|+++ +.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++++..|
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~ 528 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQG 528 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHhC
Confidence 9999999999999999999999999999886 4699999999999865 9999999999998 7899988876543
No 318
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=8.6e-39 Score=388.55 Aligned_cols=213 Identities=24% Similarity=0.406 Sum_probs=183.6
Q ss_pred cEEEEeEEEECCCC-CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC---CCCCEEEECCEeCCCCCHHHH
Q 006489 396 EVELDDVWFAYPSR-PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD---PIKGKILLNGVPLVEISHEHL 471 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~---p~~G~I~idg~~i~~~~~~~l 471 (643)
.++++|++++|+.. .++++|+|||+++++||++||+||||||||||+++|+|+.+ |++|+|++||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 47999999999632 13579999999999999999999999999999999999997 68899999999985 257
Q ss_pred hcccEEEccCCCC-CcccHHHHhhcCC----CCCCCHH----HHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 472 HRKISIVSQEPVL-FNCSIEENIAYGC----DGKASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 472 r~~i~~V~Q~~~L-f~gTireNI~~~~----~~~~~~~----~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
|+.++||+|++.+ +..|||||+.++. +.+.+++ ++.++++..++.+ -.|+.||+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 8899999998764 5689999999752 2123333 3566777776644 369999999999999999
Q ss_pred HHHHHHHHHccCCC-EEEEecccCCCCHHHHHHHHHHHHHH-cCCCeEEEEccCchhH--hhcCeEEEEeCC-EEEEEcC
Q 006489 543 QRVAIARALMMNPR-ILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTV--QSADTVAVVSDG-EIVESGT 617 (643)
Q Consensus 543 QRialARAl~~~p~-IliLDE~TSaLD~~te~~i~~~i~~~-~~~~TvI~VtHrl~~i--~~aD~Iivl~~G-~Ive~G~ 617 (643)
||++|||||+++|+ ||+||||||+||+.+...|.+.|+++ .+++|+|+++|+++.. +.+|+|++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999887 4689999999999973 689999999997 9999998
Q ss_pred hh
Q 006489 618 HE 619 (643)
Q Consensus 618 ~~ 619 (643)
..
T Consensus 988 ~~ 989 (1394)
T TIGR00956 988 LG 989 (1394)
T ss_pred cc
Confidence 64
No 319
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.3e-38 Score=320.36 Aligned_cols=194 Identities=24% Similarity=0.342 Sum_probs=160.2
Q ss_pred EECCCCCCCcceeceeEEee-----CCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEE
Q 006489 404 FAYPSRPNHMVLKGITLKLL-----SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIV 478 (643)
Q Consensus 404 f~Y~~~~~~~vL~~isl~i~-----~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V 478 (643)
|+|++. ...++|++|+++ +||+++|+|+||||||||+++|+|+++|++|+|.++|. .|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 678753 458899999987 69999999999999999999999999999999999984 69999
Q ss_pred ccCCCC-CcccHHHHhhcCCCCCC-CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 006489 479 SQEPVL-FNCSIEENIAYGCDGKA-SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 556 (643)
Q Consensus 479 ~Q~~~L-f~gTireNI~~~~~~~~-~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~ 556 (643)
||++.. ++.|++||+.+...... ..+...++++..++.+... .....||||||||++|||||+++|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999874 68999999976532111 1233556677666654432 3446799999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEE--EEcChhHHh
Q 006489 557 ILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIV--ESGTHEELL 622 (643)
Q Consensus 557 IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Iv--e~G~~~eL~ 622 (643)
++||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|+++..+ ..+++.++.
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999999999999999999999988753 799999999999987 59999999775444 456776654
No 320
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=7.3e-39 Score=356.13 Aligned_cols=209 Identities=22% Similarity=0.372 Sum_probs=172.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 474 (643)
.|+++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. +.+|+.
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 489999984 26999999999999999999999999999999999999999999999999987765 346788
Q ss_pred cEEEccCC---CCC-cccHHHHhhcCCCC---C----CC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCH
Q 006489 475 ISIVSQEP---VLF-NCSIEENIAYGCDG---K----AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 539 (643)
Q Consensus 475 i~~V~Q~~---~Lf-~gTireNI~~~~~~---~----~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSG 539 (643)
|+||||++ .+| +-|++||+.++... . .+ ++++.++++.+++.+ -........|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSg 398 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT----------PSMEQAIGLLSG 398 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC----------CCccCchhhCCH
Confidence 99999997 355 47999999874210 0 11 123444444444310 112344567999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcC
Q 006489 540 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 617 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~ 617 (643)
|||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|+..|+
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998875 4789999999999875 599999999999999998
Q ss_pred hhHHh
Q 006489 618 HEELL 622 (643)
Q Consensus 618 ~~eL~ 622 (643)
.+++.
T Consensus 479 ~~~~~ 483 (501)
T PRK10762 479 REQAT 483 (501)
T ss_pred cccCC
Confidence 87753
No 321
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.8e-39 Score=325.46 Aligned_cols=201 Identities=24% Similarity=0.322 Sum_probs=163.1
Q ss_pred eEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEE-----------ECCEeCCCCCHH
Q 006489 401 DVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL-----------LNGVPLVEISHE 469 (643)
Q Consensus 401 ~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~-----------idg~~i~~~~~~ 469 (643)
+|+|+|++. .++|+|+|+ +++||+++|+|+||||||||+++|+|+++|++|+|. ++|+++.+...+
T Consensus 5 ~~~~~y~~~--~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 5 EPVHRYGPN--SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred CcceeecCc--chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 688999643 368999994 999999999999999999999999999999999996 889988776444
Q ss_pred HHhc--ccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 470 HLHR--KISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 470 ~lr~--~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
..|. .++|++|++.+++.++.+|+.........++++.++++..++.+.. .....+||||||||++|
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVL-----------DRNIDQLSGGELQRVAI 150 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHH
Confidence 4443 4789988888776666665544311112245677777777765443 34557899999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEc
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 616 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G 616 (643)
|||++++|+++|||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++| +|+|++.|
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence 9999999999999999999999999999999988754 799999999999987 49999999 46676544
No 322
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-38 Score=355.85 Aligned_cols=201 Identities=22% Similarity=0.369 Sum_probs=166.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. .+|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999964 36999999999999999999999999999999999999999999999972 3699
Q ss_pred EEccCCCCCc-ccHHHHhhcCCCC---------------CC----------------------CHHHHHHHHHHcCchHH
Q 006489 477 IVSQEPVLFN-CSIEENIAYGCDG---------------KA----------------------SSADIENAAKMANAHDF 518 (643)
Q Consensus 477 ~V~Q~~~Lf~-gTireNI~~~~~~---------------~~----------------------~~~~i~~al~~a~l~~~ 518 (643)
|++|++.+|. -|++||+.++... .. .++++.++++..++.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 9999998875 5999999865210 00 01223333444433221
Q ss_pred HHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhH
Q 006489 519 ISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV 598 (643)
Q Consensus 519 i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i 598 (643)
.. .....+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+ .++|+|+|||+++.+
T Consensus 148 ~~----------~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~ 215 (530)
T PRK15064 148 QH----------YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFL 215 (530)
T ss_pred Hh----------cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHH
Confidence 11 123568999999999999999999999999999999999999999999975 479999999999988
Q ss_pred h-hcCeEEEEeCCEEE-EEcChhHHhh
Q 006489 599 Q-SADTVAVVSDGEIV-ESGTHEELLS 623 (643)
Q Consensus 599 ~-~aD~Iivl~~G~Iv-e~G~~~eL~~ 623 (643)
. .||+|++|++|+++ ..|++++.++
T Consensus 216 ~~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 216 NSVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred HhhcceEEEEeCCEEEEecCCHHHHHH
Confidence 5 59999999999994 7899988764
No 323
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.6e-38 Score=357.04 Aligned_cols=210 Identities=25% Similarity=0.390 Sum_probs=166.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 24699999999999999999999999999999999999999999999975 1479
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCC----------------CCCC---------HHHHHHHHHHcC-------chHHHHcC
Q 006489 476 SIVSQEPVLFNC-SIEENIAYGCD----------------GKAS---------SADIENAAKMAN-------AHDFISNF 522 (643)
Q Consensus 476 ~~V~Q~~~Lf~g-TireNI~~~~~----------------~~~~---------~~~i~~al~~a~-------l~~~i~~l 522 (643)
+||+|+|.+++. |++||+.++.. .... ..++.+.++.++ +.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999865 99999987521 0000 011112222111 11122221
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-c
Q 006489 523 PEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-A 601 (643)
Q Consensus 523 p~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-a 601 (643)
|++ .....-..||||||||++|||||+.+|++||||||||+||+++...+.+.|+++ +.|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 221 123344679999999999999999999999999999999999999999999886 3699999999999865 9
Q ss_pred CeEEEEeCCEEE-EEcChhHHhh
Q 006489 602 DTVAVVSDGEIV-ESGTHEELLS 623 (643)
Q Consensus 602 D~Iivl~~G~Iv-e~G~~~eL~~ 623 (643)
|+|++|++|+++ ..|++++..+
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHH
Confidence 999999999986 7899987654
No 324
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-39 Score=355.27 Aligned_cols=210 Identities=21% Similarity=0.343 Sum_probs=172.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC-HHHHhcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS-HEHLHRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~-~~~lr~~ 474 (643)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999842 3899999999999999999999999999999999999999999999999987554 3456788
Q ss_pred cEEEccCCC---CC-cccHHHHhhcCCCCC-------CC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCH
Q 006489 475 ISIVSQEPV---LF-NCSIEENIAYGCDGK-------AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 539 (643)
Q Consensus 475 i~~V~Q~~~---Lf-~gTireNI~~~~~~~-------~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSG 539 (643)
++|+||++. +| +.|+.||+.++.... .+ ++++.++++..++.+ .........|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSg 399 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT----------PSREQLIMNLSG 399 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc----------CCccCccccCCH
Confidence 999999973 55 589999998752101 01 123444555544411 112223458999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcC
Q 006489 540 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 617 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~ 617 (643)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .+.|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998764 4789999999999884 699999999999999999
Q ss_pred hhHHh
Q 006489 618 HEELL 622 (643)
Q Consensus 618 ~~eL~ 622 (643)
++|..
T Consensus 480 ~~~~~ 484 (501)
T PRK11288 480 REQAT 484 (501)
T ss_pred cccCC
Confidence 88754
No 325
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.6e-38 Score=332.53 Aligned_cols=208 Identities=33% Similarity=0.479 Sum_probs=176.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHh-cc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLH-RK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr-~~ 474 (643)
-++++|++.+|++ .++|+|+||++.+||.+|++|.||+|||||+|.|.|.|+|++|+|.+||.+..-.++.+-+ .-
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 3899999999985 4799999999999999999999999999999999999999999999999999987766655 45
Q ss_pred cEEEccCCCCC-cccHHHHhhcCCCCC-----CCHHHHHHHH----HHcCchHHHHcCCCcccccccCCCCCCCHHHHHH
Q 006489 475 ISIVSQEPVLF-NCSIEENIAYGCDGK-----ASSADIENAA----KMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 475 i~~V~Q~~~Lf-~gTireNI~~~~~~~-----~~~~~i~~al----~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
|+.|.||..|+ +-||.|||-+|+... .+..++.+.+ +..++. ...+++|+ +||+||||-
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~-------~~~~~~v~----~LsiaqrQ~ 153 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD-------IDPDTLVG----DLSIAQRQM 153 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC-------CChhhhhh----hCCHHHHHH
Confidence 99999999999 579999999996521 2334443333 333322 12555554 699999999
Q ss_pred HHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcC
Q 006489 545 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGT 617 (643)
Q Consensus 545 ialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~ 617 (643)
++||||+..+++|+|||||||+|+....+.+.+.++++. +|.++|+||||++.+ +-||+|.||.||+.|..++
T Consensus 154 VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 154 VEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999999999999999999997777888888875 699999999999987 5699999999999998776
No 326
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-38 Score=282.27 Aligned_cols=215 Identities=31% Similarity=0.485 Sum_probs=182.4
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCE--eCCCCC----HH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGV--PLVEIS----HE 469 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~--~i~~~~----~~ 469 (643)
+|.+++++|.|... .+|-||+|+.+.|+++.+.||||+|||||++.|-=+-.|.+|+..|-|. |.++.. ..
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 48999999999754 5899999999999999999999999999999999888999999999775 334333 45
Q ss_pred HHhcccEEEccCCCCCc-ccHHHHhhcCCC--CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 470 HLHRKISIVSQEPVLFN-CSIEENIAYGCD--GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 470 ~lr~~i~~V~Q~~~Lf~-gTireNI~~~~~--~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
.+|+.+|+|+|+-.|.+ -||-||+.=..- ...++ .+-.+.++...|.++-..+| ..|||||.
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchh
Confidence 68999999999999985 799999954310 01233 23556777888888888877 56899999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~e 620 (643)
||+||||||.-+|++|++||||+||||+-...|.+.|+++. .|.|-++|||..+..+. |.+|+.|++|+|||+|+++-
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999999999999997777778888775 48899999999999864 89999999999999999987
Q ss_pred Hhhc
Q 006489 621 LLSK 624 (643)
Q Consensus 621 L~~~ 624 (643)
.-+.
T Consensus 228 ft~p 231 (242)
T COG4161 228 FTEP 231 (242)
T ss_pred ccCc
Confidence 6553
No 327
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.2e-38 Score=355.84 Aligned_cols=210 Identities=27% Similarity=0.402 Sum_probs=172.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-|+++|++++|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999972 24699999999999999999999999999999999999999999999976 2479
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCCC-----------------CCC--------HHHHHHHHHHcCchH-------HHHcC
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCDG-----------------KAS--------SADIENAAKMANAHD-------FISNF 522 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~~-----------------~~~--------~~~i~~al~~a~l~~-------~i~~l 522 (643)
+||+|+|++|+ .|++|||.++... ... ..++.++++.++.++ .++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999985 5999999875210 001 124556666666432 22222
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-c
Q 006489 523 PEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-A 601 (643)
Q Consensus 523 p~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-a 601 (643)
|++ .......+||||||||++|||||+.+|++|||||||++||+++...+.+.|++. ++|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 221 123456789999999999999999999999999999999999999999999876 4699999999999875 8
Q ss_pred CeEEEEeCCEEE-EEcChhHHhh
Q 006489 602 DTVAVVSDGEIV-ESGTHEELLS 623 (643)
Q Consensus 602 D~Iivl~~G~Iv-e~G~~~eL~~ 623 (643)
|+|++|++|+++ ..|++++..+
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHH
Confidence 999999999976 6799987654
No 328
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=3e-38 Score=291.72 Aligned_cols=143 Identities=36% Similarity=0.583 Sum_probs=134.5
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
++++|++++|++ .++++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||. ..++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 478999999964 36999999999999999999999999999999999999999999999994 4799
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 006489 477 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 556 (643)
Q Consensus 477 ~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~ 556 (643)
|++| ||+||+||++||||++++|+
T Consensus 67 ~~~~--------------------------------------------------------lS~G~~~rv~laral~~~p~ 90 (144)
T cd03221 67 YFEQ--------------------------------------------------------LSGGEKMRLALAKLLLENPN 90 (144)
T ss_pred EEcc--------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 9999 99999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEEEeCCE
Q 006489 557 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGE 611 (643)
Q Consensus 557 IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iivl~~G~ 611 (643)
++||||||++||+++...+.+.++++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999886 5899999999999865 89999999985
No 329
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-38 Score=291.10 Aligned_cols=205 Identities=31% Similarity=0.484 Sum_probs=174.2
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
+..++++.+|+.. ..++|+|+|++|.+||.|+++||||||||||+|++.|+.+|..|+|.+||.+|..-.. .-+
T Consensus 4 l~~~~~sl~y~g~-~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 4 LNVSHLSLSYEGK-PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eehhheEEecCCc-chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 5678899999876 3569999999999999999999999999999999999999999999999999987653 469
Q ss_pred EEccCCCCCc-ccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 477 IVSQEPVLFN-CSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 477 ~V~Q~~~Lf~-gTireNI~~~~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
+|+|++-|++ -|+.||+.||-. ...+. +...+.+..++|.++=.+. -..||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~-----------i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKY-----------IWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccc-----------eEeecchHHHHHHHHHH
Confidence 9999999997 799999999832 11222 2345667777777653333 36799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchh-HhhcCeEEEEe--CCEEEEEcCh
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLST-VQSADTVAVVS--DGEIVESGTH 618 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~-i~~aD~Iivl~--~G~Ive~G~~ 618 (643)
|.-+|+.|+||||++|||+-|.+.+++.+.++. .+|-+++|||.++. +--|++++||+ .|+||+.=+.
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999999999987654 48999999999986 46799999996 4899987543
No 330
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.8e-38 Score=311.68 Aligned_cols=192 Identities=18% Similarity=0.253 Sum_probs=156.5
Q ss_pred ceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEE-ECCEeCCCCCHHHHhcccEEEccCCCCCcc-cHHH
Q 006489 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL-LNGVPLVEISHEHLHRKISIVSQEPVLFNC-SIEE 491 (643)
Q Consensus 414 vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~-idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-Tire 491 (643)
+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|+. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 68999999999999999999999999999999999999999997 777432 13467888875 9999
Q ss_pred HhhcCCC-CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHH
Q 006489 492 NIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 570 (643)
Q Consensus 492 NI~~~~~-~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~ 570 (643)
||.+... ...+.++..+.+.. ...++..+++.+ ..||||||||++||||++++|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQ------LTQLEQCYTDRV----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH------HhChhHHhhchH----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 9987421 12344444333211 223444455554 448999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhcCChH
Q 006489 571 SEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKGGVY 628 (643)
Q Consensus 571 te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~~g~y 628 (643)
+.+.+.+.+.+..+++|+|++||+++.+. .||+|++|++|+|++.|+-+++.+..+.|
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 197 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFEQY 197 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHHH
Confidence 99999998876667889999999999985 69999999999999999998876543333
No 331
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-38 Score=306.47 Aligned_cols=197 Identities=34% Similarity=0.528 Sum_probs=178.1
Q ss_pred eceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCC----CCCHHHHhcccEEEccCCCCCc-ccHH
Q 006489 416 KGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV----EISHEHLHRKISIVSQEPVLFN-CSIE 490 (643)
Q Consensus 416 ~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~----~~~~~~lr~~i~~V~Q~~~Lf~-gTir 490 (643)
=++||+.+.-..+||-|+||||||||+|++.|+..|++|.|.+||.-+. .+...--+++||||+||.-||. -|||
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 3688988887999999999999999999999999999999999998774 4555666889999999999994 7999
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHH
Q 006489 491 ENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 570 (643)
Q Consensus 491 eNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~ 570 (643)
-|++||.. ..+.+++.+++..-++...+..+| .+||||||||+||+|||+.+|++|+||||.|+||-.
T Consensus 95 gNL~YG~~-~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~ 162 (352)
T COG4148 95 GNLRYGMW-KSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP 162 (352)
T ss_pred cchhhhhc-ccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccc
Confidence 99999976 566778999999999999999998 678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC--CCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 571 SEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 571 te~~i~~~i~~~~~--~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
..+.+.-.++++.+ +--+++|||.+..+ +-||+|++|++|++...|.-+|.+++
T Consensus 163 RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 163 RKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 99999988887753 45699999999875 67999999999999999999998764
No 332
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3e-38 Score=351.47 Aligned_cols=210 Identities=24% Similarity=0.350 Sum_probs=171.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH-Hhcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH-LHRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~-lr~~ 474 (643)
-|+++|+++ .+|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++...+... +|..
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999983 1599999999999999999999999999999999999999999999999998777654 4678
Q ss_pred cEEEccCC---CCCc-ccHHHHhhcCC----CCCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 475 ISIVSQEP---VLFN-CSIEENIAYGC----DGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 475 i~~V~Q~~---~Lf~-gTireNI~~~~----~~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
|+||||++ .+|. -|+.||+.... ..... ++++.++++..++.. .........||||||
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~k 409 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF----------NHAEQAARTLSGGNQ 409 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC----------CCccCccccCCcHHH
Confidence 99999986 3665 59999985320 00001 122334444443320 123334567999999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhH
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~e 620 (643)
||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|+..|+.++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998764 4789999999999986 499999999999999999887
Q ss_pred Hhh
Q 006489 621 LLS 623 (643)
Q Consensus 621 L~~ 623 (643)
+..
T Consensus 490 ~~~ 492 (510)
T PRK15439 490 INV 492 (510)
T ss_pred CCH
Confidence 653
No 333
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=9.6e-38 Score=346.61 Aligned_cols=206 Identities=24% Similarity=0.316 Sum_probs=168.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-CCCEEEECCEeCCC-CCHHHHhc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKILLNGVPLVE-ISHEHLHR 473 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-~~G~I~idg~~i~~-~~~~~lr~ 473 (643)
-|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .+...+|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 5999999999964 3599999999999999999999999999999999999876 69999999987642 23345678
Q ss_pred ccEEEccCCCCCc---ccHHHHhhcCCC------CCCC---HHHHHHHHHHcCchH-HHHcCCCcccccccCCCCCCCHH
Q 006489 474 KISIVSQEPVLFN---CSIEENIAYGCD------GKAS---SADIENAAKMANAHD-FISNFPEKYQTFVGERGVRLSGG 540 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~---gTireNI~~~~~------~~~~---~~~i~~al~~a~l~~-~i~~lp~G~~T~vge~G~~LSGG 540 (643)
+|+|++|++.++. .|+++|+.++.. .... ++++.++++.+++.+ ... .....||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgG 405 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTAD-----------APFHSLSWG 405 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhcc-----------CchhhCCHH
Confidence 9999999987642 477777754310 0111 234667777776654 322 223679999
Q ss_pred HHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-C-CeEEEEccCchhHhh--cCeEEEEeCCEEEEE
Q 006489 541 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-G-RTVLVIAHRLSTVQS--ADTVAVVSDGEIVES 615 (643)
Q Consensus 541 QrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~-~-~TvI~VtHrl~~i~~--aD~Iivl~~G~Ive~ 615 (643)
||||++|||||+.+|++|||||||++||+++.+.+.+.|+++.+ + .|+|+|||+++.+.. ||+|++|++|+|++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999999999999999999999999999999999988753 3 469999999999974 899999999999875
No 334
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-37 Score=341.49 Aligned_cols=214 Identities=19% Similarity=0.320 Sum_probs=168.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH-HHhcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE-HLHRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~-~lr~~ 474 (643)
.|+++|++++| +++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 49999999974 2489999999999999999999999999999999999999999999999999877654 45778
Q ss_pred cEEEccCCC---CCc-ccHHHH-----hhcCCCC-C-CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 475 ISIVSQEPV---LFN-CSIEEN-----IAYGCDG-K-ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 475 i~~V~Q~~~---Lf~-gTireN-----I~~~~~~-~-~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
++|+||++. +|. .|+++| +.+.... . .+..+..+ ...+.++.+.-+.+ ........|||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~-~~~~~~~~LSgGq~q 398 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSMRVKTP-GHRTQIGSLSGGNQQ 398 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhcCccCC-CcccccccCCcHHHH
Confidence 999999963 565 577776 4322110 0 12111111 11223333311100 123445689999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhH
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~e 620 (643)
|++||||++++|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||++++|++|+++..++.++
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 9999999999999999999999999999999999997764 5899999999999885 699999999999998876643
No 335
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.6e-38 Score=286.74 Aligned_cols=213 Identities=26% Similarity=0.503 Sum_probs=188.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++||+.+|.. +.+++|+|++|++|+.++++||+|+|||||+..+.|+.++++|+|+|||.++.+++.+.|.+.++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 789999999974 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCC-cccHHHHhhcCCCCCC--------CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 477 IVSQEPVLF-NCSIEENIAYGCDGKA--------SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 477 ~V~Q~~~Lf-~gTireNI~~~~~~~~--------~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
..-|+..+- .-||||=+.||+- ++ +...+.+|++-.+|.+. .+.|- -.||||||||--|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRf-PYSqGRlt~eD~~~I~~aieyl~L~~l----~dryL-------d~LSGGQrQRAfI 146 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRF-PYSQGRLTKEDRRIINEAIEYLHLEDL----SDRYL-------DELSGGQRQRAFI 146 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCC-cccCCCCchHHHHHHHHHHHHhcccch----HHHhH-------Hhcccchhhhhhh
Confidence 999999986 5699999999963 33 23336788887776542 22221 3589999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
|-.+.++.|-++||||..+||-+-...+++.++++.+ +||+++|-|+.++.. .+|+|+-|++|+++.+|+++|+++.
T Consensus 147 AMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 147 AMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred heeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 9999999999999999999999988888888876643 899999999999985 6999999999999999999999875
No 336
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.4e-36 Score=344.16 Aligned_cols=199 Identities=27% Similarity=0.403 Sum_probs=167.4
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-|+++|++|+|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 59999999999643 3699999999999999999999999999999999999999999999876 2479
Q ss_pred EEEccCCCCCcccHHHHhhcC----CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH
Q 006489 476 SIVSQEPVLFNCSIEENIAYG----CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 551 (643)
Q Consensus 476 ~~V~Q~~~Lf~gTireNI~~~----~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl 551 (643)
+|++|++. ...++.+|..+. .+ ..+++++.++++..++.+.... .....||||||||++||||+
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~-~~~~~~i~~~L~~~gl~~~~~~----------~~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcC-CCCHHHHHHHHHHCCCChHHhc----------CCccccCHHHHHHHHHHHHH
Confidence 99999973 334566664321 12 3457788899999888643222 22468999999999999999
Q ss_pred ccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEEEeCCEEE-EEcChhHH
Q 006489 552 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIV-ESGTHEEL 621 (643)
Q Consensus 552 ~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Iv-e~G~~~eL 621 (643)
+++|++|||||||++||+.+...+.+.+.+. +.|+|+|||++..+.. ||+|++|++|+|+ ..|++++.
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999999999998775 3599999999999875 9999999999998 57887764
No 337
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-36 Score=284.44 Aligned_cols=155 Identities=43% Similarity=0.729 Sum_probs=145.4
Q ss_pred EEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEE
Q 006489 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISI 477 (643)
Q Consensus 398 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 477 (643)
+++|++|+|++. ++++++||+|++|+.++|+|+||||||||+++|.|+++|.+|+|+++|.++.+.....+++.++|
T Consensus 1 ~~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 1 EIENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred CeEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEE
Confidence 378999999753 69999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 006489 478 VSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRI 557 (643)
Q Consensus 478 V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~I 557 (643)
++| |||||+||++||||++.+|++
T Consensus 78 ~~q--------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 78 VPQ--------------------------------------------------------LSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred Eee--------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 999 999999999999999999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhHhh-cCeEEEEeCCE
Q 006489 558 LLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQS-ADTVAVVSDGE 611 (643)
Q Consensus 558 liLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~VtHrl~~i~~-aD~Iivl~~G~ 611 (643)
+||||||++||.++...+.+.+.+..+ ++|++++||+++.+.. ||++++|++|+
T Consensus 102 ~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 102 LLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999987654 4899999999999988 59999999875
No 338
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.8e-36 Score=338.96 Aligned_cols=203 Identities=23% Similarity=0.318 Sum_probs=167.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ + .+|
T Consensus 324 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 324 VIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred EEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 5999999999964 3699999999999999999999999999999999999999999999955 2 169
Q ss_pred EEEccCC-CCCc-ccHHHHhhcCCCC---CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 476 SIVSQEP-VLFN-CSIEENIAYGCDG---KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 476 ~~V~Q~~-~Lf~-gTireNI~~~~~~---~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
+||||++ .++. -|++||+.++... ...+.+..++++..++.+.. .......||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD----------QQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHH
Confidence 9999997 5654 5999999875320 11233445566665553211 122335799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEEEeC-CEEEE-EcChhHHhhc
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSD-GEIVE-SGTHEELLSK 624 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iivl~~-G~Ive-~G~~~eL~~~ 624 (643)
++.+|++|||||||++||+.+...+.+.|+++ + .|+|+|||+++.+.. ||+|++|++ |++.+ .|+++++++.
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99999999999999999999999999999886 3 499999999998864 999999986 78874 7888887654
No 339
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-36 Score=339.87 Aligned_cols=199 Identities=26% Similarity=0.403 Sum_probs=169.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-|+++|++++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999964 36999999999999999999999999999999999999999999999741 279
Q ss_pred EEEccCC--CCC-cccHHHHhhcCCCCCCCHHHHHHHHHHcCchH-HHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH
Q 006489 476 SIVSQEP--VLF-NCSIEENIAYGCDGKASSADIENAAKMANAHD-FISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 551 (643)
Q Consensus 476 ~~V~Q~~--~Lf-~gTireNI~~~~~~~~~~~~i~~al~~a~l~~-~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl 551 (643)
+|++|++ .+. +.|+.+|+....+ ...++++.++++..++.+ .... ....||||||||++||||+
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~-----------~~~~LSgGekqRl~La~~l 445 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAP-QELEQKLRDYLGGFGFQGDKVTE-----------ETRRFSGGEKARLVLALIV 445 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCc-hhhHHHHHHHHHHcCCChhHhcC-----------chhhCCHHHHHHHHHHHHH
Confidence 9999985 344 3488998853222 334566778888877743 3322 2357999999999999999
Q ss_pred ccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEE-EEcChhHHh
Q 006489 552 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIV-ESGTHEELL 622 (643)
Q Consensus 552 ~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Iv-e~G~~~eL~ 622 (643)
+++|++|||||||++||+.+...+.+.|+++ +.|+|+|||++..+. .||+|++|++|+|+ ..|++++..
T Consensus 446 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 446 WQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999999999999999999999887 459999999999986 49999999999998 689998864
No 340
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.7e-36 Score=312.77 Aligned_cols=206 Identities=28% Similarity=0.442 Sum_probs=174.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC-HHHHhcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS-HEHLHRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~-~~~lr~~ 474 (643)
.+++++++.+||+ ..+++||||++++||..|+.|.||+|||||+++|.|+|+|++|+|++||++++--+ .+..|.-
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 4899999999984 46899999999999999999999999999999999999999999999999998665 5557778
Q ss_pred cEEEccCCCCCc-ccHHHHhhcCCCCC----CCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHH
Q 006489 475 ISIVSQEPVLFN-CSIEENIAYGCDGK----ASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 545 (643)
Q Consensus 475 i~~V~Q~~~Lf~-gTireNI~~~~~~~----~~~----~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRi 545 (643)
||+|.|++.|++ -|+.|||.+|.+.. .+. +++.+.++..+ ++-...+.-..||-|||||+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yG-----------l~vdp~~~V~dLsVG~qQRV 149 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYG-----------LPVDPDAKVADLSVGEQQRV 149 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhC-----------CCCCccceeecCCcchhHHH
Confidence 999999999995 69999999997521 122 23333333333 33333344567999999999
Q ss_pred HHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCCEEEEE
Q 006489 546 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVES 615 (643)
Q Consensus 546 alARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~ 615 (643)
.|-+|||++|++||||||||.|-|..-..+.+.++++. .|+|+|+|||+|..++. ||++-||.+|+++..
T Consensus 150 EIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt 221 (501)
T COG3845 150 EILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221 (501)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEee
Confidence 99999999999999999999999998888888888765 69999999999999865 999999999998743
No 341
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=6.2e-36 Score=340.61 Aligned_cols=200 Identities=26% Similarity=0.386 Sum_probs=166.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999964 36999999999999999999999999999999999999999999999 4322 69
Q ss_pred EEEccCC-CCCc-ccHHHHhhcCCCCCC--C--HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 476 SIVSQEP-VLFN-CSIEENIAYGCDGKA--S--SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 476 ~~V~Q~~-~Lf~-gTireNI~~~~~~~~--~--~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
+|++|++ .++. .|+.||+.++.+ .. + +.++.+.+...++... -.+.. -..||||||||++|||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~l~~~~l~~~------~~~~~----~~~LSgGekqRl~la~ 453 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQ-EVMVNGRPRHVLGYLQDFLFHPK------RAMTP----VKALSGGERNRLLLAR 453 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcc-cccccchHHHHHHHHHhcCCCHH------HHhCh----hhhCCHHHHHHHHHHH
Confidence 9999986 4654 599999987532 11 2 3345566666555321 11222 3569999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEe-CCEEEE-EcChhHHh
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVS-DGEIVE-SGTHEELL 622 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~-~G~Ive-~G~~~eL~ 622 (643)
|++.+|++|||||||++||..+...+.+.+++. +.|+|+|||+...+. .||+|++|+ +|+|++ .|+|++-+
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 999999999999999999999999999999876 569999999999985 599999998 899987 68888764
No 342
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2e-36 Score=287.47 Aligned_cols=145 Identities=30% Similarity=0.379 Sum_probs=131.6
Q ss_pred EeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEc
Q 006489 400 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVS 479 (643)
Q Consensus 400 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~ 479 (643)
.|++++|.+ .+++++ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEc
Confidence 578899964 368888 4999999999999999999999999999999999999999995 388999
Q ss_pred cCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 006489 480 QEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILL 559 (643)
Q Consensus 480 Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~Ili 559 (643)
|++. ||||||||++||||++++|++++
T Consensus 68 q~~~-----------------------------------------------------LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 68 QYID-----------------------------------------------------LSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred ccCC-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 8653 99999999999999999999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEE
Q 006489 560 LDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIV 613 (643)
Q Consensus 560 LDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Iv 613 (643)
|||||++||+++.+.+.+.++++.+ ++|+|+|||+++.++ .||+|++|+++-.+
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 9999999999999999999988643 389999999999987 59999999988665
No 343
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=6e-36 Score=336.22 Aligned_cols=202 Identities=24% Similarity=0.333 Sum_probs=165.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ ++ +|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EE
Confidence 5999999999964 3699999999999999999999999999999999999999999999955 21 69
Q ss_pred EEEccCCC-CCc-ccHHHHhhcCCCC-CCC--HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 476 SIVSQEPV-LFN-CSIEENIAYGCDG-KAS--SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 476 ~~V~Q~~~-Lf~-gTireNI~~~~~~-~~~--~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
+|++|++. ++. .|++||+.++... ..+ +.+..++++..++.+.. .......||||||||++||||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGe~qrv~la~a 457 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD----------QQKKVGQLSGGERNRVHLAKT 457 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHH
Confidence 99999973 554 6999999886320 111 23344555555553211 122346799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEEEeC-CEEE-EEcChhHHhh
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSD-GEIV-ESGTHEELLS 623 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iivl~~-G~Iv-e~G~~~eL~~ 623 (643)
++.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||+++.+.. ||+|++|++ |+++ ..|+++++.+
T Consensus 458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEF--AGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 99999999999999999999999999999987 3599999999999865 999999997 5876 4588876544
No 344
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4.2e-36 Score=336.45 Aligned_cols=193 Identities=27% Similarity=0.332 Sum_probs=165.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-++++|++++|++ ..|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ .+|
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999963 24999999999999999999999999999999999999999999986 169
Q ss_pred EEEccCCCC-CcccHHHHhhcCCCCCCC-HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc
Q 006489 476 SIVSQEPVL-FNCSIEENIAYGCDGKAS-SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 553 (643)
Q Consensus 476 ~~V~Q~~~L-f~gTireNI~~~~~~~~~-~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~ 553 (643)
+|+||++.+ ++.|++||+.++.. ..+ +....++++..++.+..... -..||||||||++|||||++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~-----------~~~LSGGe~QRvaiAraL~~ 470 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITD-DLGSSYYKSEIIKPLQLERLLDKN-----------VKDLSGGELQRVAIAACLSR 470 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhh-hcChHHHHHHHHHHCCCHHHHhCC-----------cccCCHHHHHHHHHHHHHhc
Confidence 999999875 56899999987632 232 33466788888876554333 35799999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcCh
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTH 618 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~ 618 (643)
+|+||||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+. .||+|++|++ ++...|+.
T Consensus 471 ~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 471 DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 9999999999999999999999999998753 789999999999876 5999999964 88777763
No 345
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.7e-36 Score=361.92 Aligned_cols=214 Identities=26% Similarity=0.422 Sum_probs=180.4
Q ss_pred cEEEEeEEEECCCC----------CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC--CCCEEEECCEeC
Q 006489 396 EVELDDVWFAYPSR----------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP--IKGKILLNGVPL 463 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p--~~G~I~idg~~i 463 (643)
.++++||+|..+.. ....+|+|+|+++++|+++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 58999999987521 123699999999999999999999999999999999999763 789999999876
Q ss_pred CCCCHHHHhcccEEEccCCCCCc-ccHHHHhhcCC----CCCCCHH----HHHHHHHHcCchHHHHcCCCcccccccCCC
Q 006489 464 VEISHEHLHRKISIVSQEPVLFN-CSIEENIAYGC----DGKASSA----DIENAAKMANAHDFISNFPEKYQTFVGERG 534 (643)
Q Consensus 464 ~~~~~~~lr~~i~~V~Q~~~Lf~-gTireNI~~~~----~~~~~~~----~i~~al~~a~l~~~i~~lp~G~~T~vge~G 534 (643)
+ ...+|+.++||+|++.++. .|++|||.+.. +.+.+++ .+.++++..++.+. .|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 3457788999999988875 69999998742 2123332 36677887777553 477777654
Q ss_pred -CCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchh--HhhcCeEEEEeC-
Q 006489 535 -VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST--VQSADTVAVVSD- 609 (643)
Q Consensus 535 -~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~--i~~aD~Iivl~~- 609 (643)
..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|+++. +++|+|+++|+++. .+.||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6899999999999999999999999999999999999999999998874 47999999999984 578999999996
Q ss_pred CEEEEEcChh
Q 006489 610 GEIVESGTHE 619 (643)
Q Consensus 610 G~Ive~G~~~ 619 (643)
|+++..|+..
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999853
No 346
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.4e-35 Score=281.30 Aligned_cols=156 Identities=26% Similarity=0.339 Sum_probs=130.0
Q ss_pred CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHH
Q 006489 411 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIE 490 (643)
Q Consensus 411 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTir 490 (643)
..++|+|+||++++|++++|+||||||||||+++++ +++|+|.++|.. ... .+++++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH----------
Confidence 457899999999999999999999999999999996 369999998852 222 2446888877
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC--CCEEEEecccCCCC
Q 006489 491 ENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN--PRILLLDEATSALD 568 (643)
Q Consensus 491 eNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~--p~IliLDE~TSaLD 568 (643)
.++++..++.++ ........||||||||++||||++++ |+++||||||++||
T Consensus 68 ----------------~~~l~~~~L~~~----------~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD 121 (176)
T cd03238 68 ----------------LQFLIDVGLGYL----------TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH 121 (176)
T ss_pred ----------------HHHHHHcCCCcc----------ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCC
Confidence 233444333221 24556789999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEEEeCCE
Q 006489 569 AESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGE 611 (643)
Q Consensus 569 ~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl~~G~ 611 (643)
+++.+.+.+.++++. .++|+|+|||+++.++.||+|++|++|+
T Consensus 122 ~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 122 QQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 999999999998865 5899999999999999999999996643
No 347
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-35 Score=334.65 Aligned_cols=201 Identities=21% Similarity=0.289 Sum_probs=159.2
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999964 369999999999999999999999999999999999999999999999832 588
Q ss_pred EEccCCCCCcccHHHHhhcCCCC--C------------------------------CCHHHHHHHHHHcCchHHHHcCCC
Q 006489 477 IVSQEPVLFNCSIEENIAYGCDG--K------------------------------ASSADIENAAKMANAHDFISNFPE 524 (643)
Q Consensus 477 ~V~Q~~~Lf~gTireNI~~~~~~--~------------------------------~~~~~i~~al~~a~l~~~i~~lp~ 524 (643)
|++|++..+..|+.+++.-.... . ..++++.++++..++.+
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~------- 140 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN------- 140 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc-------
Confidence 99997655666766655321000 0 00112222233322210
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCe
Q 006489 525 KYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADT 603 (643)
Q Consensus 525 G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~ 603 (643)
......-..||||||||++|||||+.+|+||||||||++||+++...+.+.|.+. +.|+|+|||+...+. -||+
T Consensus 141 ---~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~ 215 (638)
T PRK10636 141 ---EQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDK 215 (638)
T ss_pred ---hhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCE
Confidence 1122334679999999999999999999999999999999999999999999875 579999999999986 5999
Q ss_pred EEEEeCCEEEE-EcChhHHhh
Q 006489 604 VAVVSDGEIVE-SGTHEELLS 623 (643)
Q Consensus 604 Iivl~~G~Ive-~G~~~eL~~ 623 (643)
|++|++|+++. .|+|++...
T Consensus 216 i~~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 216 IIHIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred EEEEeCCEEEEecCCHHHHHH
Confidence 99999999975 788877653
No 348
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=275.85 Aligned_cols=205 Identities=28% Similarity=0.435 Sum_probs=175.2
Q ss_pred CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCC--C-cc
Q 006489 411 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVL--F-NC 487 (643)
Q Consensus 411 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~L--f-~g 487 (643)
++++|+++||+|+.|++|-|+|.+|||||||++.|.|-..|++|+|.|||+|+...+.......++-|+|||-. + +-
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999974 4 56
Q ss_pred cHHHHhhcCCCC----CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecc
Q 006489 488 SIEENIAYGCDG----KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEA 563 (643)
Q Consensus 488 TireNI~~~~~~----~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~ 563 (643)
||.||+.++..+ ..+.. ...=+...-.+.+..+|.|++-.++.+---|||||||=++|+-|.++.|+||+|||=
T Consensus 98 TieENl~la~~Rg~~rgl~~~--ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchh--hhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 999999987431 12211 111122233456889999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchh-HhhcCeEEEEeCCEEEEEcC
Q 006489 564 TSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLST-VQSADTVAVVSDGEIVESGT 617 (643)
Q Consensus 564 TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~-i~~aD~Iivl~~G~Ive~G~ 617 (643)
|+||||.+...|.+.=.+.- .+-|.++|||.++. +..-+|.|+|++|+||-.=+
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 99999998888877644432 36699999999986 57789999999999996533
No 349
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.7e-34 Score=328.95 Aligned_cols=207 Identities=22% Similarity=0.406 Sum_probs=157.5
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
|+++|++++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 4 l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 4 ISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 899999999964 369999999999999999999999999999999999999999999998721 368
Q ss_pred EEccCCCC-CcccHHHHhhcCCC-----------------CCCCHHHHHHH------HH-------HcCchHHHHcCCCc
Q 006489 477 IVSQEPVL-FNCSIEENIAYGCD-----------------GKASSADIENA------AK-------MANAHDFISNFPEK 525 (643)
Q Consensus 477 ~V~Q~~~L-f~gTireNI~~~~~-----------------~~~~~~~i~~a------l~-------~a~l~~~i~~lp~G 525 (643)
|++|++.. ..+|+.+++..+.. .+..++.+... +. ...+.+.++.+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 88887643 23677766532210 00000000000 00 00111222222 2
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeE
Q 006489 526 YQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTV 604 (643)
Q Consensus 526 ~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~I 604 (643)
+. ....-..||||||||++|||||+.+|+||||||||++||+++...+.+.|.++ +.|+|+|||+...+.. ||+|
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeE
Confidence 21 12334679999999999999999999999999999999999999999999886 4699999999999865 9999
Q ss_pred EEEeCCEEEE-EcChhHHhh
Q 006489 605 AVVSDGEIVE-SGTHEELLS 623 (643)
Q Consensus 605 ivl~~G~Ive-~G~~~eL~~ 623 (643)
++|++|+++. .|+|++.++
T Consensus 224 ~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 224 VDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEEECCEEEEecCCHHHHHH
Confidence 9999999985 599887654
No 350
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.6e-35 Score=263.74 Aligned_cols=230 Identities=26% Similarity=0.453 Sum_probs=182.2
Q ss_pred EEEEeEEEECCCC------CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH
Q 006489 397 VELDDVWFAYPSR------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH 470 (643)
Q Consensus 397 I~~~~vsf~Y~~~------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~ 470 (643)
++++|+|..+..+ ....+.+.|||++++|+++||+|.+|||||||+|.|.|..+|++|+|++||.++.--+...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 4566665433211 1235789999999999999999999999999999999999999999999999998777777
Q ss_pred HhcccEEEccCCC-----------CCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCH
Q 006489 471 LHRKISIVSQEPV-----------LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 539 (643)
Q Consensus 471 lr~~i~~V~Q~~~-----------Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSG 539 (643)
..++|-+++|||- +.++.++-|=.+. + +.-.+++.+.++.++|..+=..+ .-..||-
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~-~-~~R~~~i~~TL~~VGL~Pdhan~----------~~~~la~ 152 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLE-P-EQRRKQIFETLRMVGLLPDHANY----------YPHMLAP 152 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCC-h-HHHHHHHHHHHHHhccCcccccc----------chhhcCc
Confidence 8888999999985 2222233333222 1 23456788999999986543322 1367899
Q ss_pred HHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHH--cCCCeEEEEccCchhHhh-cCeEEEEeCCEEEEEc
Q 006489 540 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSL--MKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESG 616 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~--~~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G 616 (643)
|||||+||||||.-+|+|+|-||+..+||..-...+.+...++ ..|-.-|+|+.++..+++ +|+|+||++|++||.|
T Consensus 153 ~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred hhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecC
Confidence 9999999999999999999999999999999888887765443 347889999999999986 9999999999999999
Q ss_pred ChhHHhhc--CChHHHHHHHHhcC
Q 006489 617 THEELLSK--GGVYTALVKRQLQE 638 (643)
Q Consensus 617 ~~~eL~~~--~g~y~~l~~~q~~~ 638 (643)
+..++++. ...-.+|+..+..+
T Consensus 233 ~t~~v~a~P~~~~TkRlieShFg~ 256 (267)
T COG4167 233 STADVLASPLHELTKRLIESHFGE 256 (267)
T ss_pred ChhhhhcCCccHHHHHHHHHHhcc
Confidence 99999874 34456677665543
No 351
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-34 Score=291.25 Aligned_cols=226 Identities=34% Similarity=0.495 Sum_probs=187.4
Q ss_pred EEEEeEEEECCCC-CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEECCEeCCCCCHHH
Q 006489 397 VELDDVWFAYPSR-PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVEISHEH 470 (643)
Q Consensus 397 I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~~~~~ 470 (643)
++++|++..|... ....++++|||+|.+||++|+||.||||||--++.++|+++. .+|+|.++|.|+-..+..+
T Consensus 7 L~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~ 86 (534)
T COG4172 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQ 86 (534)
T ss_pred eeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHH
Confidence 7888887776421 245789999999999999999999999999999999999865 4799999999999999888
Q ss_pred Hhc----ccEEEccCCCC-Cc--cc----HHHHhhcCCC--CCCCHHHHHHHHHHcCchH---HHHcCCCcccccccCCC
Q 006489 471 LHR----KISIVSQEPVL-FN--CS----IEENIAYGCD--GKASSADIENAAKMANAHD---FISNFPEKYQTFVGERG 534 (643)
Q Consensus 471 lr~----~i~~V~Q~~~L-f~--gT----ireNI~~~~~--~~~~~~~i~~al~~a~l~~---~i~~lp~G~~T~vge~G 534 (643)
+|. +|++|+|||.- .| -| |.|-|.+-.. ...-++++.+.++.+++.+ .+.+.|
T Consensus 87 lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP----------- 155 (534)
T COG4172 87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP----------- 155 (534)
T ss_pred HhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC-----------
Confidence 876 79999999973 22 13 4455555421 1233556778888888854 455555
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhh-cCeEEEEeCCE
Q 006489 535 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGE 611 (643)
Q Consensus 535 ~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~-aD~Iivl~~G~ 611 (643)
..||||||||+.||-||..+|++||-||||.|||....+.|.+-|+++- .+..+++|||+|..++. ||+|+||.+|+
T Consensus 156 HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ 235 (534)
T COG4172 156 HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235 (534)
T ss_pred cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccE
Confidence 5689999999999999999999999999999999999999999998764 37899999999999965 99999999999
Q ss_pred EEEEcChhHHhhc-CChHHHHHH
Q 006489 612 IVESGTHEELLSK-GGVYTALVK 633 (643)
Q Consensus 612 Ive~G~~~eL~~~-~g~y~~l~~ 633 (643)
|||+|+-++|.+. ...|.++.-
T Consensus 236 ivE~~~t~~lF~~PqHpYTr~Ll 258 (534)
T COG4172 236 IVETGTTETLFAAPQHPYTRKLL 258 (534)
T ss_pred EeecCcHHHHhhCCCChHHHHHH
Confidence 9999999999874 667866544
No 352
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.1e-35 Score=354.41 Aligned_cols=202 Identities=23% Similarity=0.281 Sum_probs=170.2
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCC----CCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCc-
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY----DPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN- 486 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~----~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~- 486 (643)
+++|+|+|+++++||.++|+||||||||||+|+|+|.. .|.+|+|.+||.++.+.. ..+|+.++||+|++.+|+
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 45899999999999999999999999999999999986 578999999999986654 356778999999998886
Q ss_pred ccHHHHhhcCC----CC----CCCHHHH-----HHHHHHcCchHHHHcCCCcccccccC-CCCCCCHHHHHHHHHHHHHc
Q 006489 487 CSIEENIAYGC----DG----KASSADI-----ENAAKMANAHDFISNFPEKYQTFVGE-RGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 487 gTireNI~~~~----~~----~~~~~~i-----~~al~~a~l~~~i~~lp~G~~T~vge-~G~~LSGGQrQRialARAl~ 552 (643)
-|++||+.|+. |. ..++++. .++++..++ .+-.||.||+ ....||||||||++|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 59999998852 10 1233332 223444444 4446888886 46789999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCch-h-HhhcCeEEEEeCCEEEEEcChhHH
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLS-T-VQSADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~-~-i~~aD~Iivl~~G~Ive~G~~~eL 621 (643)
.+|+|++||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ . .+.+|+|++|++|+++..|+.+++
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 99999999999999999999999999998753 789999999973 3 467999999999999999999887
No 353
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-34 Score=274.29 Aligned_cols=208 Identities=25% Similarity=0.400 Sum_probs=173.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 474 (643)
-|+++||+++|.+ +++|+|||++|++||.-+|+|++|||||||++++.|.++|++|.+.+.|+.....+. .++|++
T Consensus 31 li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 31 LIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred eEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 4999999999974 479999999999999999999999999999999999999999999999999988887 999999
Q ss_pred cEEEccCCC---CCcccHHHHhhcCC------CC-CCCHHHH---HHHHHHcCchHHHHcCCCcccccccCCCCCCCHHH
Q 006489 475 ISIVSQEPV---LFNCSIEENIAYGC------DG-KASSADI---ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 541 (643)
Q Consensus 475 i~~V~Q~~~---Lf~gTireNI~~~~------~~-~~~~~~i---~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 541 (643)
||+|+-+-. .=+-+++|=+.-|- .. +++++++ ...++.+++.+ +.+-| =..||-||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-la~r~----------~~~LS~Ge 176 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-LADRP----------FGSLSQGE 176 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-hccCc----------hhhcCHhH
Confidence 999986433 22557777765431 11 4565554 34455555554 33222 35799999
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC---CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcC
Q 006489 542 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK---GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 617 (643)
Q Consensus 542 rQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~---~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~ 617 (643)
|||+-|||||+++|.+|||||||++||....+.+.+.+.++.. ..|+|+|||+.+.+. ..++++.+++|+++.+|.
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999999987753 568999999999875 569999999999998774
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1e-34 Score=351.62 Aligned_cols=208 Identities=24% Similarity=0.396 Sum_probs=170.1
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEECCEeCCCCCHHHHhcccEEEccCCCCCc-c
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI---KGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN-C 487 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-g 487 (643)
..+|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+.. .|+.++||+|++.+|. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 45899999999999999999999999999999999999998 999999999987664 3778999999988875 6
Q ss_pred cHHHHhhcCCC----C-------CCCH----------HHHHHHHHHc---C------chHHHH--cCCCcccccccCC-C
Q 006489 488 SIEENIAYGCD----G-------KASS----------ADIENAAKMA---N------AHDFIS--NFPEKYQTFVGER-G 534 (643)
Q Consensus 488 TireNI~~~~~----~-------~~~~----------~~i~~al~~a---~------l~~~i~--~lp~G~~T~vge~-G 534 (643)
|++||+.|+.. . +.+. +++....+++ + .++.++ .|.+-.||.||+. -
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999987521 0 0111 1111111111 1 112222 3455678999865 4
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCc--hhHhhcCeEEEEeCC
Q 006489 535 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRL--STVQSADTVAVVSDG 610 (643)
Q Consensus 535 ~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl--~~i~~aD~Iivl~~G 610 (643)
..||||||||++||||++.+|++++|||||++||+.+...+.+.|+++. .++|+|+++|++ +....+|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 6899999999999999999999999999999999999999999999875 378999999997 456789999999999
Q ss_pred EEEEEcChhHHh
Q 006489 611 EIVESGTHEELL 622 (643)
Q Consensus 611 ~Ive~G~~~eL~ 622 (643)
+++..|+.+++.
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 999999998875
No 355
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=100.00 E-value=3.1e-30 Score=267.34 Aligned_cols=502 Identities=18% Similarity=0.246 Sum_probs=344.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 74 IATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARL 153 (643)
Q Consensus 74 ~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 153 (643)
.-.++.+..+.+++.+.-+=+.++..+..... .+..+.++-+++ +++-....+..-.|+....+..+..++
T Consensus 122 ~hs~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~--------r~F~~~LlkW~l-iaiPAtFvNS~Iryle~klaLafrtrL 192 (728)
T KOG0064|consen 122 AQSFFLISRTFLSLFVAKLDGQLVKNIVRKRG--------RQFLWDLLKWFL-IAIPASFVNSAIRYLESKLALAFRTRL 192 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhH--------HHHHHHHHHHHh-hhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666777776654321 122222221121 122223334444555556667777777
Q ss_pred HHHHHHHHhcCChhhhccC-ChhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHH
Q 006489 154 RKNLFSHLINQEIAFYDVT-RTGE---LLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTL----LAL 225 (643)
Q Consensus 154 r~~~~~~ll~~~~~~~~~~-~~G~---i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l----~~l 225 (643)
....|+..+... .||.-. .-|. .=|+++.|+..+.+...+.+.++.-.++-++++-+.+.-.+...+. +..
T Consensus 193 ~~h~y~~Y~snq-TyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~ 271 (728)
T KOG0064|consen 193 TRHAYDMYLSNQ-TFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITLAG 271 (728)
T ss_pred HHHHHHHHhccC-ceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhhhh
Confidence 777777776655 444322 2232 3357999999998888887777666555555544444433322221 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 226 VVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFF 305 (643)
Q Consensus 226 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (643)
.++.+...+.+.+..+..++..+.....+.+...-+..+.|-+.|-.|+-.+.+.++.++..+..........+...++.
T Consensus 272 lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~Yi 351 (728)
T KOG0064|consen 272 LVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYI 351 (728)
T ss_pred hHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233334445556666777777777777788888889999999999999999999999999988877776666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------cCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 306 GGLNAASTLSVIVVVIYGANLTI------------TGSMT--------PGALTSFILYSLTVGSSVSGLSSLYTVAMKAA 365 (643)
Q Consensus 306 ~~~~~~~~~~~~~~~~~g~~~v~------------~g~lt--------~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 365 (643)
.+-++++-- .|-|.-+++ .+... .-.+.+.=.+.......+..+..++.++.+..
T Consensus 352 MleqF~mKY-----vWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLa 426 (728)
T KOG0064|consen 352 MLEQFVMKY-----TWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLA 426 (728)
T ss_pred HHHHHHHHH-----hhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555543321 222222211 11111 12233334455566677788888899999888
Q ss_pred HHHHHHHHHhcccC-------------CCCCCC------CCCCCC-----CCCCcEEEEeEEEECCCCCCCcceeceeEE
Q 006489 366 GASRRVFQLLDRVS-------------SMPKSG------NQCPLG-----DQDGEVELDDVWFAYPSRPNHMVLKGITLK 421 (643)
Q Consensus 366 ~~~~ri~~~l~~~~-------------~~~~~~------~~~~~~-----~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~ 421 (643)
..-.|+.+.++.-. +..+.. +..+.+ .....|.++||-.--|.. ..+...++|+
T Consensus 427 Gyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~--~vvv~~Ltf~ 504 (728)
T KOG0064|consen 427 GYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAG--DVLVPKLTFQ 504 (728)
T ss_pred hHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCc--ceeecceeEE
Confidence 88889886654211 110000 001111 012348899988777754 3588999999
Q ss_pred eeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCC---
Q 006489 422 LLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCD--- 498 (643)
Q Consensus 422 i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~--- 498 (643)
|++|..+.|.||+|||||+|.+.|.|++|...|...+-- +.+|-|+||.|+.=-||+||.|-|-+.
T Consensus 505 i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~ 573 (728)
T KOG0064|consen 505 IEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQ 573 (728)
T ss_pred ecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcCcccceeecCCcHHH
Confidence 999999999999999999999999999999888887644 336999999999999999999988542
Q ss_pred ---CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHH
Q 006489 499 ---GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLV 575 (643)
Q Consensus 499 ---~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i 575 (643)
..++|.++++.++.+.|+. |.+...|+|.. -+----||||+|||+++||.+|++|+--+|||+|||+-.+-|..+
T Consensus 574 ~~~kg~~d~dL~~iL~~v~L~~-i~qr~~g~da~-~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i 651 (728)
T KOG0064|consen 574 MKRKGYTDQDLEAILDIVHLEH-ILQREGGWDAV-RDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKI 651 (728)
T ss_pred HHhcCCCHHHHHHHHHHhhHHH-HHHhccChhhh-ccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHH
Confidence 3588999999999999975 66667776653 444557999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEccCchhHhhcCeEEEE
Q 006489 576 QDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV 607 (643)
Q Consensus 576 ~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl 607 (643)
.++.++. +-+.|-||||++..+.-...+-.
T Consensus 652 ~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 652 FQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred HHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 9999885 89999999999998876666665
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.8e-34 Score=323.30 Aligned_cols=192 Identities=26% Similarity=0.341 Sum_probs=160.0
Q ss_pred eEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEE-----------ECCEeCCCCCHH
Q 006489 401 DVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL-----------LNGVPLVEISHE 469 (643)
Q Consensus 401 ~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~-----------idg~~i~~~~~~ 469 (643)
+++++|.. ...+|++++ ++++|++++|+||||||||||+++|+|+++|++|+|. ++|.++.++..+
T Consensus 78 ~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 47899964 236899999 8999999999999999999999999999999999998 999988755322
Q ss_pred H--Hhcc----cEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 470 H--LHRK----ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 470 ~--lr~~----i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
- .+.+ +.|++|.|.+|.+|++||+... + ..+++.++++..++.+.. ++. -.+|||||||
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~-~~~~~~~~l~~l~l~~~~-------~~~----~~~LSgGe~q 219 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---D-ERGKLDEVVERLGLENIL-------DRD----ISELSGGELQ 219 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhh---h-HHHHHHHHHHHcCCchhh-------cCC----hhhCCHHHHH
Confidence 1 1122 4556667888899999999753 1 235677888888775543 222 3579999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEEEeCC
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDG 610 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iivl~~G 610 (643)
|++|||||+++|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|+++
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999987668999999999999864 8999999873
No 357
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.1e-34 Score=270.70 Aligned_cols=215 Identities=25% Similarity=0.465 Sum_probs=184.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.+++++|+.+|.+ ..+++|+||++++|+..+++|++|+||||.+++|+|+++|++|+|.++|.+++. ..+++|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 4799999999974 469999999999999999999999999999999999999999999999988764 467799
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-CCCCHHHHHHHHHHcCchHHHHcCCC-cccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 476 SIVSQEPVLFN-CSIEENIAYGCD-GKASSADIENAAKMANAHDFISNFPE-KYQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 476 ~~V~Q~~~Lf~-gTireNI~~~~~-~~~~~~~i~~al~~a~l~~~i~~lp~-G~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
||.|-+--|+. -|+.|-|.|... ..++.+++.+-+. .|++.+.- |+. ..+-..||-|..|+|.+--|++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~-----~wLer~~i~~~~---~~kIk~LSKGnqQKIQfisavi 146 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQ-----AWLERLEIVGKK---TKKIKELSKGNQQKIQFISAVI 146 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHH-----HHHHhccccccc---cchHHHhhhhhhHHHHHHHHHh
Confidence 99999999995 799999988632 2466666554333 36665542 121 2345689999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhcC
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKG 625 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~~ 625 (643)
++|+++|||||+|+|||.+.+.+.+.+.++. +|+|+|+.|||++-++ -||+++.|++|+-|-+|+-++..+..
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 9999999999999999999999999997765 6999999999999995 59999999999999999998876643
No 358
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.2e-34 Score=249.12 Aligned_cols=196 Identities=28% Similarity=0.402 Sum_probs=165.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEECCEeCCCCCHHHHh
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI---KGKILLNGVPLVEISHEHLH 472 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~~~~~lr 472 (643)
.+.++||+.+-+++ ..|.|+||+|.+||++-+.||||||||||+.-+.|.+.+. +|++.+|++++..++.. +
T Consensus 2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 46789999888754 6899999999999999999999999999999999999885 89999999999988754 5
Q ss_pred cccEEEccCCCCCc-ccHHHHhhcCCCCCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 473 RKISIVSQEPVLFN-CSIEENIAYGCDGKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~-gTireNI~~~~~~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
+++++..||++||+ -+|-+||.|.-|... -......|++..+++.+..+.| .+||||||.|++|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHH
Confidence 69999999999996 699999999866332 2334667888999999888887 5679999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHH--cCCCeEEEEccCchhHhhcCeEEEE
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSL--MKGRTVLVIAHRLSTVQSADTVAVV 607 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~--~~~~TvI~VtHrl~~i~~aD~Iivl 607 (643)
-|+|+..|+.++||||+|.||..-+..+.+-.-.. ..+--+|.|||+++-++.-.+|+-|
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 99999999999999999999998666665554221 1478899999999988865555544
No 359
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.6e-33 Score=266.55 Aligned_cols=190 Identities=28% Similarity=0.469 Sum_probs=161.2
Q ss_pred CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCC--ccc
Q 006489 411 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF--NCS 488 (643)
Q Consensus 411 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf--~gT 488 (643)
+.++|+||||++.+||+++|||++|||||||+++|.|.|+|++|+|.++| +|++.---..=| +-|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G-------------~v~~li~lg~Gf~pelT 105 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-------------KVAPLIELGAGFDPELT 105 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc-------------eEehhhhcccCCCcccc
Confidence 45789999999999999999999999999999999999999999999999 666544444434 358
Q ss_pred HHHHhhcC-----CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecc
Q 006489 489 IEENIAYG-----CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEA 563 (643)
Q Consensus 489 ireNI~~~-----~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~ 563 (643)
-||||.+- -..+..++.+.+..+-+.|.+|+.. | -.+.|-|.+-||+.|=|.-.+|||||+||.
T Consensus 106 GreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-P----------vktYSSGM~aRLaFsia~~~~pdILllDEv 174 (249)
T COG1134 106 GRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-P----------VKTYSSGMYARLAFSVATHVEPDILLLDEV 174 (249)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-c----------hhhccHHHHHHHHHhhhhhcCCCEEEEehh
Confidence 89999653 1112345667889999999999754 4 257899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHH-cCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 564 TSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 564 TSaLD~~te~~i~~~i~~~-~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
.|..|+.=.++=.+.++++ .+++|+|+|||+++.++ .||++++|++|+|+..|+++|..+.
T Consensus 175 lavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 175 LAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred hhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 9999999555555666666 67899999999999996 5999999999999999999998764
No 360
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.9e-33 Score=304.56 Aligned_cols=209 Identities=29% Similarity=0.450 Sum_probs=165.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.|+++|++++|++ +++++|+||++.+|++++|||++|||||||+++|.|...|++|+|..++.- +|
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~-----------~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGL-----------RV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCc-----------eE
Confidence 4899999999964 479999999999999999999999999999999999999999999987721 69
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCCCCCC--HHHHHHHHH------------------H-------cCchHHHHcCCCccc
Q 006489 476 SIVSQEPVLFNC-SIEENIAYGCDGKAS--SADIENAAK------------------M-------ANAHDFISNFPEKYQ 527 (643)
Q Consensus 476 ~~V~Q~~~Lf~g-TireNI~~~~~~~~~--~~~i~~al~------------------~-------a~l~~~i~~lp~G~~ 527 (643)
+|++|++.+.+. |++|.+..+.. +.. ..+++++.. . +.+...+..| |+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~ 145 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFG-ELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFP 145 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhH-HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCC
Confidence 999999999965 99999988743 111 111111111 0 1111122222 122
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEE
Q 006489 528 TFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAV 606 (643)
Q Consensus 528 T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iiv 606 (643)
.. ...-.+||||||-|++|||||+.+||||+|||||.+||.++-.-+.+-|.+. ++ |+|+|||+-.++.+ |++|+.
T Consensus 146 ~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ 222 (530)
T COG0488 146 DE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILE 222 (530)
T ss_pred cc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEE
Confidence 11 2233579999999999999999999999999999999999999999999865 45 99999999999976 999999
Q ss_pred EeCCEEEE-EcChhHHhhc
Q 006489 607 VSDGEIVE-SGTHEELLSK 624 (643)
Q Consensus 607 l~~G~Ive-~G~~~eL~~~ 624 (643)
+++|++.. .|+|+.-++.
T Consensus 223 ld~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 223 LDRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred ecCCceeEecCCHHHHHHH
Confidence 99998765 6788776543
No 361
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.5e-33 Score=318.26 Aligned_cols=221 Identities=19% Similarity=0.279 Sum_probs=163.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCC---CCCCCEEEECCEeCCC--CCH--
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY---DPIKGKILLNGVPLVE--ISH-- 468 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~---~p~~G~I~idg~~i~~--~~~-- 468 (643)
.|+++|++|+|++ .++|+|+||+|++|+++||||+||||||||+++|+|.. .|.+|+|.+.++++.. .+.
T Consensus 177 ~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 177 DIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 5999999999964 35999999999999999999999999999999999864 5789999876554321 111
Q ss_pred ----------HHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCH----HHHHHHHHHcCch----------HHHHcCCC
Q 006489 469 ----------EHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASS----ADIENAAKMANAH----------DFISNFPE 524 (643)
Q Consensus 469 ----------~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~----~~i~~al~~a~l~----------~~i~~lp~ 524 (643)
..+++.++|++|+|.+...+..+|.........+. +++.++++..++. +.+..+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l-- 331 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL-- 331 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC--
Confidence 12355689999998775556555542211001111 2333333333221 111111
Q ss_pred cccc-cccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cC
Q 006489 525 KYQT-FVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-AD 602 (643)
Q Consensus 525 G~~T-~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD 602 (643)
|++. .....-.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+|||++..+.. ||
T Consensus 332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d 409 (718)
T PLN03073 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVT 409 (718)
T ss_pred CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCC
Confidence 1210 111223579999999999999999999999999999999999999999999886 7899999999999876 99
Q ss_pred eEEEEeCCEEE-EEcChhHHhh
Q 006489 603 TVAVVSDGEIV-ESGTHEELLS 623 (643)
Q Consensus 603 ~Iivl~~G~Iv-e~G~~~eL~~ 623 (643)
+|++|++|+++ ..|++++..+
T Consensus 410 ~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 410 DILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred EEEEEECCEEEEeCCCHHHHHH
Confidence 99999999996 5788876543
No 362
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=9.9e-34 Score=259.90 Aligned_cols=136 Identities=43% Similarity=0.696 Sum_probs=126.7
Q ss_pred eeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCccc-HHHHh
Q 006489 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCS-IEENI 493 (643)
Q Consensus 415 L~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gT-ireNI 493 (643)
|+|+||+|++|++++|+|+||||||||+++|+|+++|.+|+|.+||.++.+.+...+|+.++|++|++.+|++. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999765 9999
Q ss_pred hcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccC
Q 006489 494 AYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS 565 (643)
Q Consensus 494 ~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TS 565 (643)
..+++++++++.+++.+ ..++.++.+...||||||||++||||++++|+++||||||+
T Consensus 80 -------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23567889999988766 46788888889999999999999999999999999999996
No 363
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-32 Score=307.42 Aligned_cols=219 Identities=30% Similarity=0.484 Sum_probs=188.1
Q ss_pred CcEEEEeEEEECCCCC--CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC---CCCEEEECCEeCCCCCHH
Q 006489 395 GEVELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP---IKGKILLNGVPLVEISHE 469 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p---~~G~I~idg~~i~~~~~~ 469 (643)
..++++|++..-++.+ .+.+|+|||.+++|||..||.||||||||||+++|+|..++ .+|+|++|| +..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG---~~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG---RPRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC---ccCchh
Confidence 3589999999876542 46799999999999999999999999999999999999875 789999999 456678
Q ss_pred HHhcccEEEccCCCCCc-ccHHHHhhcCC----CCCCC----HHHHHHHHHHcCchHHHHcCCCcccccccC-CCCCCCH
Q 006489 470 HLHRKISIVSQEPVLFN-CSIEENIAYGC----DGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGE-RGVRLSG 539 (643)
Q Consensus 470 ~lr~~i~~V~Q~~~Lf~-gTireNI~~~~----~~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge-~G~~LSG 539 (643)
.+++..|||+||..+++ -||||++.|.. |.+.+ +++++++++.-+|.+ + -||.||. ++..+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~-~------~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK-C------ADTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh-h------ccceecCCCCCcccc
Confidence 89999999999999995 69999998853 22223 334666666666653 2 5788884 4578999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchh--HhhcCeEEEEeCCEEEEEc
Q 006489 540 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST--VQSADTVAVVSDGEIVESG 616 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~--i~~aD~Iivl~~G~Ive~G 616 (643)
|||+|++||--++.||+||+||||||+||+.+...+.+.++++. +|||||+.=|+++. ....|++++|.+|+++-.|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999998864 59999999999985 5789999999999999999
Q ss_pred ChhHHhh
Q 006489 617 THEELLS 623 (643)
Q Consensus 617 ~~~eL~~ 623 (643)
+.+++.+
T Consensus 254 ~~~~~~~ 260 (613)
T KOG0061|consen 254 SPRELLE 260 (613)
T ss_pred CHHHHHH
Confidence 9988743
No 364
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-31 Score=253.97 Aligned_cols=216 Identities=29% Similarity=0.491 Sum_probs=185.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcC--CCCCCCEEEECCEeCCCCCHHHH-h
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF--YDPIKGKILLNGVPLVEISHEHL-H 472 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~--~~p~~G~I~idg~~i~~~~~~~l-r 472 (643)
-++++|++.+-.+. +++|++|||+|++||..||.||+|||||||.++|+|. |++++|+|++||.||.++++++. |
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 37899999987542 4799999999999999999999999999999999996 48899999999999999997775 5
Q ss_pred cccEEEccCCCCCcc-cHHHHhhcCCCC--C------CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 473 RKISIVSQEPVLFNC-SIEENIAYGCDG--K------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 473 ~~i~~V~Q~~~Lf~g-TireNI~~~~~~--~------~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
.-|....|.|.=++| |+.+=+..+... . ...+++.++++..++++.... -.| ...||||+|.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~------R~v---N~GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE------RYV---NEGFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhh------ccc---CCCcCcchHH
Confidence 569999999999987 888887654210 1 124567888888888873321 122 3468999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhc--CeEEEEeCCEEEEEcChhH
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSA--DTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~a--D~Iivl~~G~Ive~G~~~e 620 (643)
|.-|+-+++-+|++.|||||=|+||-++=+.|.+.++.+. +++++++|||.-..+... |++.||-+|+||..|.+ |
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 9999999999999999999999999999999999998875 588999999999998876 99999999999999999 7
Q ss_pred Hhh
Q 006489 621 LLS 623 (643)
Q Consensus 621 L~~ 623 (643)
|..
T Consensus 231 l~~ 233 (251)
T COG0396 231 LAE 233 (251)
T ss_pred HHH
Confidence 765
No 365
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=3.6e-32 Score=249.66 Aligned_cols=215 Identities=25% Similarity=0.425 Sum_probs=184.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECC-EeCCCCCHHHH-hc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG-VPLVEISHEHL-HR 473 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg-~~i~~~~~~~l-r~ 473 (643)
-++++||+.++++- .+|+|+||++.+||.-+|+||+|+||||++..|.|--+|++|+++++| .|+..++...+ |.
T Consensus 5 iL~~~~vsVsF~GF---~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGGF---KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcce---eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 47899999999764 589999999999999999999999999999999999999999999999 99999997776 44
Q ss_pred ccEEEccCCCCCc-ccHHHHhhcCCCC-------------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCH
Q 006489 474 KISIVSQEPVLFN-CSIEENIAYGCDG-------------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 539 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~-gTireNI~~~~~~-------------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSG 539 (643)
-|+--+|.|..|. -||+||+.+.... ....+++.+++...+|.+.-. .-..+||-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~-----------~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD-----------RLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhh-----------hhhhhhcc
Confidence 5999999999995 6999999775321 112335777887777765422 23468999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcCh
Q 006489 540 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTH 618 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~ 618 (643)
||||++.|+--+.++|++|+||||++++-.+.....-+-++++.+++++++|-|++.+++ .||+|-||..|.+..+|+-
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 999999999999999999999999999955544556677888888999999999999996 5999999999999999999
Q ss_pred hHHhhc
Q 006489 619 EELLSK 624 (643)
Q Consensus 619 ~eL~~~ 624 (643)
+|+-+.
T Consensus 231 d~v~~d 236 (249)
T COG4674 231 DEVQND 236 (249)
T ss_pred HHhhcC
Confidence 997653
No 366
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.4e-31 Score=266.28 Aligned_cols=191 Identities=23% Similarity=0.291 Sum_probs=128.7
Q ss_pred CCcceeceeEEeeCCCEEEEECCCCChHHHHH-HHHHcCCCCCCCEEEECC-------EeCCCC---CHHHHhc-ccEEE
Q 006489 411 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIA-NLIERFYDPIKGKILLNG-------VPLVEI---SHEHLHR-KISIV 478 (643)
Q Consensus 411 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl-~lL~g~~~p~~G~I~idg-------~~i~~~---~~~~lr~-~i~~V 478 (643)
+.++|+|+||+|++||+++|+|+||||||||+ ..+. .+|++.+.. ..+..+ +...++. ..++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 45799999999999999999999999999996 3332 134332210 011111 1111221 24444
Q ss_pred ccCCCC-Cc-----ccHHHHhhcCCC--CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 479 SQEPVL-FN-----CSIEENIAYGCD--GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 479 ~Q~~~L-f~-----gTireNI~~~~~--~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
.|++.. ++ +++.+...+... ......+..+.++.+++.+. ........||||||||++||||
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~lara 151 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYL----------TLSRSAPTLSGGEAQRIRLATQ 151 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcc----------cccCccCcCCHHHHHHHHHHHH
Confidence 554432 11 122222221100 01111122334444433221 2345567899999999999999
Q ss_pred HccCC--CEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEEE------eCCEEEEEc
Q 006489 551 LMMNP--RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------SDGEIVESG 616 (643)
Q Consensus 551 l~~~p--~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl------~~G~Ive~G 616 (643)
++++| +++||||||++||+.+...+.+.|+++. .++|+|+|||+++.++.||+|++| ++|+|+++|
T Consensus 152 l~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 152 IGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 99998 5999999999999999999999998764 578999999999999999999999 999999987
No 367
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.8e-30 Score=283.61 Aligned_cols=203 Identities=28% Similarity=0.419 Sum_probs=176.0
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
.-++++|++++|++. +++++++||.|++|++||||||+|+|||||+|+|+|...|.+|+|.+.-. -+
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence 358999999999753 57999999999999999999999999999999999999999999987652 16
Q ss_pred cEEEccCC-CCC-cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 475 ISIVSQEP-VLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 475 i~~V~Q~~-~Lf-~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
|||.+|+- .++ +.|+-|++.-..+ +..+.+++..|...++...-..-| -..||||||-|+.||+.++
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~-~~~e~~~r~~L~~f~F~~~~~~~~----------v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFP-DGDEQEVRAYLGRFGFTGEDQEKP----------VGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCc-cccHHHHHHHHHHcCCChHHHhCc----------hhhcCHhHHHHHHHHHHhc
Confidence 99999987 344 4599999987755 455788999999988876533322 4579999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEEEeCCEEEEE-cChhHHhhc
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVES-GTHEELLSK 624 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~-G~~~eL~~~ 624 (643)
.+|.+|||||||.+||.++-..+.++|.+. .-|+|+|||+..++.. |++|+++++ ++.+. |+|++-.+.
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 999999999999999999999999999887 5699999999999975 999999998 77776 888876543
No 368
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.3e-31 Score=238.59 Aligned_cols=228 Identities=25% Similarity=0.404 Sum_probs=175.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECC-----EeCCCCCHHH
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG-----VPLVEISHEH 470 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg-----~~i~~~~~~~ 470 (643)
-++++++|..|.+. .-.+||||++-|||..+|||.||||||||++||.+-+.|++|+|.++- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 37899999999754 468999999999999999999999999999999999999999999976 4555555544
Q ss_pred H----hcccEEEccCCCCCcccHHHHhhcCCCCCCCHH-------HHHHHHHHcCchHHHHcCCCcccccccCCCCCCCH
Q 006489 471 L----HRKISIVSQEPVLFNCSIEENIAYGCDGKASSA-------DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 539 (643)
Q Consensus 471 l----r~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~-------~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSG 539 (643)
. |.-=++|.|+|. +-+|-.+.-|. ++.+. .|-+ + .+...+|++...- ..+.+.+....+||
T Consensus 83 RR~L~RTeWG~VhQnP~---DGLRm~VSAG~--NiGERlma~G~RHYG~-i-R~~a~~WL~~VEI-~~~RiDD~PrtFSG 154 (258)
T COG4107 83 RRRLLRTEWGFVHQNPR---DGLRMQVSAGG--NIGERLMAIGARHYGN-I-RAEAQDWLEEVEI-DLDRIDDLPRTFSG 154 (258)
T ss_pred HHHHhhhccceeecCcc---ccceeeeccCC--ccchhHHhhhhhhhhh-H-HHHHHHHHHhccc-CcccccCcccccch
Confidence 3 455799999994 11121111110 11110 0100 0 1112345554432 23456677899999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhHh-hcCeEEEEeCCEEEEEc
Q 006489 540 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 616 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~--~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G 616 (643)
|.+||+.|||-|+..|+++++||||-+||..-.+++.+.++.+.. +-.+|+|||++...+ .+|+.+||++|+++|.|
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~G 234 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccc
Confidence 999999999999999999999999999999999999999988754 568999999999987 59999999999999999
Q ss_pred ChhHHhh-cCChHHHHHHH
Q 006489 617 THEELLS-KGGVYTALVKR 634 (643)
Q Consensus 617 ~~~eL~~-~~g~y~~l~~~ 634 (643)
-.+..+. ....|..+.-.
T Consensus 235 LTDrvLDDP~hPYTQLLVS 253 (258)
T COG4107 235 LTDRVLDDPHHPYTQLLVS 253 (258)
T ss_pred cccccccCCCCchHHHHHH
Confidence 8888775 46678776543
No 369
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-31 Score=245.41 Aligned_cols=190 Identities=25% Similarity=0.441 Sum_probs=162.5
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
++.+|++..-+ +..++.++||++.+||.+-|+||+|||||||+++|.|+.+|++|+|+++|.++.... ++.++.+.
T Consensus 3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78 (209)
T ss_pred chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHH
Confidence 45566666543 457999999999999999999999999999999999999999999999999887764 44588899
Q ss_pred EEccCCCCC-cccHHHHhhcCCC--CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc
Q 006489 477 IVSQEPVLF-NCSIEENIAYGCD--GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 553 (643)
Q Consensus 477 ~V~Q~~~Lf-~gTireNI~~~~~--~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~ 553 (643)
|+--.+-+= .-|+.||+.|+.. ...+++.+++|+..++|.+ ++.+|-+ +||-||+.|+||||-.+.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g-~~dlp~~----------~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAG-LEDLPVG----------QLSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccc-ccccchh----------hcchhHHHHHHHHHHHcC
Confidence 998888874 6799999999853 1245788999999999987 5667754 599999999999999999
Q ss_pred CCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhc
Q 006489 554 NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSA 601 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~a 601 (643)
.+|+.||||||+|||.+.+..+..-+.... ++-.||..||+.-.+..+
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~a 196 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIASA 196 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCcc
Confidence 999999999999999999999988886544 577899999998777554
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.5e-31 Score=268.81 Aligned_cols=194 Identities=25% Similarity=0.371 Sum_probs=146.8
Q ss_pred ceeceeEEeeCCCEEEEECCCCChHHHHHHHHH-----c-CC----CCCCC-----------EEEECCEeCCCCCHH---
Q 006489 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIE-----R-FY----DPIKG-----------KILLNGVPLVEISHE--- 469 (643)
Q Consensus 414 vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~-----g-~~----~p~~G-----------~I~idg~~i~~~~~~--- 469 (643)
.|+|+|++||.|..++|+|+||||||||++.++ + +. .|..+ .|.+|..||..-+..
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 599999999999999999999999999998663 1 11 12222 467777766432211
Q ss_pred -------HHhc----------------ccEEEccCCCC-CcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCc
Q 006489 470 -------HLHR----------------KISIVSQEPVL-FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEK 525 (643)
Q Consensus 470 -------~lr~----------------~i~~V~Q~~~L-f~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G 525 (643)
.+|+ .+.|..++... .+-|+.||+.|+.. ....++..++++.+++.+.
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~-~~~~~~~~~~L~~vgL~~l------- 161 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFEN-IPKIARKLQTLCDVGLGYI------- 161 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHh-hhhHHHHHHHHHHcCCchh-------
Confidence 1111 24455555553 46688888877632 1222344455555544321
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHccC---CCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhc
Q 006489 526 YQTFVGERGVRLSGGQKQRVAIARALMMN---PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSA 601 (643)
Q Consensus 526 ~~T~vge~G~~LSGGQrQRialARAl~~~---p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~a 601 (643)
..++....|||||+||++|||||.++ |+++||||||++||+++...+.+.|+++. ++.|+|+|+|+++.++.|
T Consensus 162 ---~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 162 ---KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred ---hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 34667789999999999999999996 79999999999999999999999998765 478999999999999999
Q ss_pred CeEEEE------eCCEEEEEcCh
Q 006489 602 DTVAVV------SDGEIVESGTH 618 (643)
Q Consensus 602 D~Iivl------~~G~Ive~G~~ 618 (643)
|+|++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999974
No 371
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=6.9e-31 Score=253.43 Aligned_cols=208 Identities=23% Similarity=0.348 Sum_probs=160.7
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEc-c---CCCCCcc
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVS-Q---EPVLFNC 487 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~-Q---~~~Lf~g 487 (643)
-++.+||||+||+|+.++++|++|+||||++|+|.|+..|++|.|+++|.+-..=..+.+| ++++|. | --|=.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~-~~~~v~gqk~ql~Wdlp- 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR-SIGLVMGQKLQLWWDLP- 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHH-HHHHHhhhhheeeeech-
Confidence 3578999999999999999999999999999999999999999999999887664444444 444442 2 223222
Q ss_pred cHHHHhhcCCC-CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCC
Q 006489 488 SIEENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSA 566 (643)
Q Consensus 488 TireNI~~~~~-~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSa 566 (643)
+.|-+..-.. -+++++++.+-+.. +.+-| +++..+-..-..||=|||-|..||-||+++|+||+|||||=+
T Consensus 115 -~~ds~~v~~~Iy~Ipd~~F~~r~~~-----l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 -ALDSLEVLKLIYEIPDDEFAERLDF-----LTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred -hhhhHHHHHHHHhCCHHHHHHHHHH-----HHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 3333322100 13556555543332 22222 344445556688999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH--cCCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhhcCChHH
Q 006489 567 LDAESEYLVQDAMDSL--MKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKGGVYT 629 (643)
Q Consensus 567 LD~~te~~i~~~i~~~--~~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~ 629 (643)
||..+...|.+.+++. ..++||++.||.++-+ +.||+|++|+.|+++..|+.++|.+.-|.|.
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k 252 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYK 252 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCce
Confidence 9999999999999754 3689999999999987 5699999999999999999999988755554
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=2.2e-30 Score=251.77 Aligned_cols=164 Identities=25% Similarity=0.327 Sum_probs=134.7
Q ss_pred eceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCC---------CEEEECCEeCCCCCHHHHhcccEEEccCCCCCc
Q 006489 416 KGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK---------GKILLNGVPLVEISHEHLHRKISIVSQEPVLFN 486 (643)
Q Consensus 416 ~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~---------G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~ 486 (643)
+++++++++| +++|+||||||||||+++|.++.+|.. |++.++|.++... ..+.+|+||+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 5789999999 999999999999999999999986653 4688888776542 2467899999999988
Q ss_pred ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc----cCCCEEEEec
Q 006489 487 CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM----MNPRILLLDE 562 (643)
Q Consensus 487 gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~----~~p~IliLDE 562 (643)
|+. ...+++.++++. ++-.+ .....||||||||++||||+. ++|++++|||
T Consensus 89 --------~~~---~~~~~~~~~l~~----------~~~~~----~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 --------YSI---ISQGDVSEIIEA----------PGKKV----QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred --------eeE---EehhhHHHHHhC----------CCccc----cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 321 123456666655 11122 334679999999999999986 5779999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeC
Q 006489 563 ATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 609 (643)
Q Consensus 563 ~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~ 609 (643)
||++||+++...+.+.|+++.++.|+|+|||+++.++.||+++.|..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 99999999999999999988778999999999999999999999854
No 373
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.9e-29 Score=226.47 Aligned_cols=203 Identities=29% Similarity=0.378 Sum_probs=154.3
Q ss_pred EEEEeEEEECCC----CCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECC----EeCCCCCH
Q 006489 397 VELDDVWFAYPS----RPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG----VPLVEISH 468 (643)
Q Consensus 397 I~~~~vsf~Y~~----~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg----~~i~~~~~ 468 (643)
+.++|++.++.- .-.-|+++|+||+++.||++++-||||||||||+++|-+-|.|++|+|.+.- +|+-...+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 677888665521 1134799999999999999999999999999999999999999999998843 34444443
Q ss_pred H----HHhcccEEEccCCCCCc-----ccHHHHh-hcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 006489 469 E----HLHRKISIVSQEPVLFN-----CSIEENI-AYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 538 (643)
Q Consensus 469 ~----~lr~~i~~V~Q~~~Lf~-----gTireNI-~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LS 538 (643)
. -.|+.||||+|---... .-+.|-+ ..|-+.+.-.++....+...++-+-+=+|| ..++|
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La----------PaTFS 154 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA----------PATFS 154 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----------CcccC
Confidence 3 34777999999643332 1223333 233221111223445556666666666666 47899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeC
Q 006489 539 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSD 609 (643)
Q Consensus 539 GGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~ 609 (643)
||++||+.|||.+.-|-|||+|||||++||+.+.+.+.+.|++.+ +|+.+|=|-|+-+.-.. |||++-|..
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999997654 68899999999887644 899988753
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=3.2e-29 Score=253.02 Aligned_cols=192 Identities=23% Similarity=0.255 Sum_probs=141.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHH----------------cCCCCCCC-----
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIE----------------RFYDPIKG----- 454 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~----------------g~~~p~~G----- 454 (643)
.|+++|.- +|.+ ..++++++ |++++|+||||||||||+++|. ++..+.+|
T Consensus 3 ~i~~~nfk-sy~~---~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGFK-SYKD---QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCcc-Cccc---CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 36666531 3543 34777776 8999999999999999999998 34444555
Q ss_pred ---EEEECCEeCCCC---CHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHH--HcCCCcc
Q 006489 455 ---KILLNGVPLVEI---SHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFI--SNFPEKY 526 (643)
Q Consensus 455 ---~I~idg~~i~~~---~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i--~~lp~G~ 526 (643)
+|.+++.+-... ....++++++++||++.++. ..++.++++.++..+++.+.- ..+|+|.
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~------------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~ 141 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK------------KNVTKNDVMNLLESAGFSRSNPYYIVPQGK 141 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC------------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCc
Confidence 555555322111 12335666788877765533 246677888888887765421 1123333
Q ss_pred cc-------cccCCCCCCCHHHHHHHHHHHHHc----cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCc
Q 006489 527 QT-------FVGERGVRLSGGQKQRVAIARALM----MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRL 595 (643)
Q Consensus 527 ~T-------~vge~G~~LSGGQrQRialARAl~----~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl 595 (643)
.+ ...+.+..||||||||++||||++ ++|+++||||||++||+.+.+.+.+.|+++.+++|+|+++|+.
T Consensus 142 i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~ 221 (243)
T cd03272 142 INSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRP 221 (243)
T ss_pred hHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 22 235678899999999999999996 4689999999999999999999999999887788999999999
Q ss_pred hhHhhcCeEEEEe
Q 006489 596 STVQSADTVAVVS 608 (643)
Q Consensus 596 ~~i~~aD~Iivl~ 608 (643)
+..+.||+|++|+
T Consensus 222 ~~~~~~d~i~~l~ 234 (243)
T cd03272 222 ELLEVADKFYGVK 234 (243)
T ss_pred HHHhhCCEEEEEE
Confidence 9899999999985
No 375
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.96 E-value=1.6e-25 Score=227.11 Aligned_cols=273 Identities=27% Similarity=0.456 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 73 IIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVAR 152 (643)
Q Consensus 73 ~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (643)
++++++.++..+..++.|++++.++|.+....... ....+.+...++++.++...+.....+...+.+.++..+
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDN------NSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKD 75 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888899999999999999865543220 111222333333444455556666667778899999999
Q ss_pred HHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006489 153 LRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAIS 232 (643)
Q Consensus 153 lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~ 232 (643)
+|.++++|+++.|..+|+++++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|+++++.+++.|+..
T Consensus 76 l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~ 155 (275)
T PF00664_consen 76 LRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLF 155 (275)
T ss_dssp HHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 233 VAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAAS 312 (643)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (643)
++..++.++.++..++..+..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+..+...........+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (275)
T PF00664_consen 156 LISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFIS 235 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHH
Q 006489 313 TLSVIVVVIYGANL-TITGSMTPGALTSFILYSLTVGSSV 351 (643)
Q Consensus 313 ~~~~~~~~~~g~~~-v~~g~lt~g~l~~~~~~~~~~~~~l 351 (643)
.+..++++++|+++ +.+|.+++|.+++++.+...+..|+
T Consensus 236 ~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 236 YLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 99899999999999 9999999999999999999998885
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.96 E-value=3.2e-29 Score=247.44 Aligned_cols=191 Identities=20% Similarity=0.223 Sum_probs=144.4
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEee-CCCEEEEECCCCChHHHHHHHHH-cCCCCCCCEEEECCEeCCCCCHHHHhc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLL-SGSKIALVGPSGGGKSTIANLIE-RFYDPIKGKILLNGVPLVEISHEHLHR 473 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~-~G~~vaivG~sGsGKSTLl~lL~-g~~~p~~G~I~idg~~i~~~~~~~lr~ 473 (643)
.|+++|.. +|.+. ++++|+.. +|++++|+|+||||||||+++|. .+|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58999987 76532 46777654 58999999999999999999999 4666666666554 2233444555677
Q ss_pred ccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCc-ccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 474 KISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEK-YQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G-~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
.|++++|++.- ...++.++ ..+.+++.+... ++.| +++.+.....+||||||||++||||++
T Consensus 77 ~v~~~f~~~~~----~~~~~r~~---gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~ 139 (213)
T cd03279 77 EVSFTFQLGGK----KYRVERSR---GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALA 139 (213)
T ss_pred EEEEEEEECCe----EEEEEEec---CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHH
Confidence 89999999843 22333333 355555544321 2222 455556677899999999999999997
Q ss_pred c----------CCCEEEEecccCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhHhh-cCeEEEEeCCE
Q 006489 553 M----------NPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQS-ADTVAVVSDGE 611 (643)
Q Consensus 553 ~----------~p~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~VtHrl~~i~~-aD~Iivl~~G~ 611 (643)
. +|+++||||||++||+.+...+.+.+.++.+ ++|+|+|||+++.+.. ||+|++|++|.
T Consensus 140 ~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred hHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 4 6799999999999999999999999988765 7899999999998754 79999999984
No 377
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.95 E-value=1.9e-25 Score=261.78 Aligned_cols=220 Identities=20% Similarity=0.391 Sum_probs=190.5
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCC-CCHHHHhc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE-ISHEHLHR 473 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~-~~~~~lr~ 473 (643)
..+..+|++..|+.. .. +.+++|+.+++||+.++-|++||||||+++++.|..+|++|++.++|.++.. .+.+..++
T Consensus 563 ~~~~~~~L~k~y~~~-~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK-DG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecch-hh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 358899999999865 22 8999999999999999999999999999999999999999999999999975 45667999
Q ss_pred ccEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHH
Q 006489 474 KISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 547 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~-gTireNI~~~~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRial 547 (643)
++||+||+..|++ -|.||.+.+... +... ++.+++.++..++.+.... + -.++|||+|.||++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~-------~----~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK-------Q----VRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc-------c----hhhCCCcchhhHHH
Confidence 9999999999985 699999976421 1222 2336777888887776443 2 46799999999999
Q ss_pred HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCC-eEEEEccCchhHhh-cCeEEEEeCCEEEEEcChhHHhhcC
Q 006489 548 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGR-TVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSKG 625 (643)
Q Consensus 548 ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~-TvI~VtHrl~~i~~-aD~Iivl~~G~Ive~G~~~eL~~~~ 625 (643)
|-|++.+|++++|||||+++||.+++.+.+.|.+..++. -+|+.||..+..+. |||+.+|-+|++..-|+.++|-++-
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRY 789 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhc
Confidence 999999999999999999999999999999999887644 99999999999975 9999999999999999999997664
Q ss_pred Ch
Q 006489 626 GV 627 (643)
Q Consensus 626 g~ 627 (643)
|.
T Consensus 790 G~ 791 (885)
T KOG0059|consen 790 GS 791 (885)
T ss_pred CC
Confidence 43
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=4.2e-27 Score=238.40 Aligned_cols=187 Identities=19% Similarity=0.218 Sum_probs=141.2
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCC-CCEEEECCE-eCCCCC--HHHHhcccEEEccCCCC---------C-cccHH
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFYDPI-KGKILLNGV-PLVEIS--HEHLHRKISIVSQEPVL---------F-NCSIE 490 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~~p~-~G~I~idg~-~i~~~~--~~~lr~~i~~V~Q~~~L---------f-~gTir 490 (643)
..+++||||||||||||+++|.+++.+. .|+++..|. |+-... ....+.+|.+++|++.. . .-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5799999999999999999999998876 568998886 432111 11234589999999632 1 45888
Q ss_pred HHhhcCCC-------CCCCHHHHHHHHHHcCchHH--HHcCCCcc-------cccccCCCCCCCHHHHHHHHHHHHHc--
Q 006489 491 ENIAYGCD-------GKASSADIENAAKMANAHDF--ISNFPEKY-------QTFVGERGVRLSGGQKQRVAIARALM-- 552 (643)
Q Consensus 491 eNI~~~~~-------~~~~~~~i~~al~~a~l~~~--i~~lp~G~-------~T~vge~G~~LSGGQrQRialARAl~-- 552 (643)
+||..+.. .....+++.++++.+++.-. -.-+|+|- ..........||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88765421 12345778889998887510 00011110 01233456789999999999999997
Q ss_pred --cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEe--CCE
Q 006489 553 --MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVS--DGE 611 (643)
Q Consensus 553 --~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~--~G~ 611 (643)
++|+++||||||++||+.+...+.+.|+++.++.|+|+|||+.+.++.||+|+-+. +|.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~ 247 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTRFVDGT 247 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEEeeCCE
Confidence 68899999999999999999999999998878899999999999999999998774 553
No 379
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.94 E-value=2.6e-27 Score=247.73 Aligned_cols=198 Identities=26% Similarity=0.395 Sum_probs=169.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-|.++||+|.|++. +.+++++||-|.++++||+|||+|+|||||+|+++|...|..|.|.-.- +.++
T Consensus 389 vi~~~nv~F~y~~~--~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~-----------H~~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN--PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS-----------HNKL 455 (614)
T ss_pred eEEEeccccCCCCc--chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc-----------cccc
Confidence 48999999999875 3799999999999999999999999999999999999999999997533 2255
Q ss_pred EEEccC---CCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 476 SIVSQE---PVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 476 ~~V~Q~---~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
++..|+ .--++.|.-||+.---+..-..+++...+..++|..+....|. .+||+|||.|++.||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHh
Confidence 666664 3357888999986543323567789999999999987777774 579999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEEEeCCEEEE-EcCh
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVE-SGTH 618 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive-~G~~ 618 (643)
+.|.||+|||||++||.++-....++|.++ .-+||+|||+...+.+ |++|.+.+||++.. .|.+
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999999999999999999886 5699999999999965 89999999998864 3444
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=7.9e-27 Score=228.22 Aligned_cols=162 Identities=22% Similarity=0.281 Sum_probs=129.8
Q ss_pred eEEeeCCCEEEEECCCCChHHHHHHHHH----cCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCC-----CCCc-cc
Q 006489 419 TLKLLSGSKIALVGPSGGGKSTIANLIE----RFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEP-----VLFN-CS 488 (643)
Q Consensus 419 sl~i~~G~~vaivG~sGsGKSTLl~lL~----g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~-----~Lf~-gT 488 (643)
++++.+| +++|+|+||||||||+.+|. |..+|..|.+..+...+ .....+..|++++|++ .++. -|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i---~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLI---REGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHH---hCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 3556677 99999999999999999994 98888888776222222 2234567899999998 3332 29
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHH------HHHHHHHccCCCEEEEec
Q 006489 489 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR------VAIARALMMNPRILLLDE 562 (643)
Q Consensus 489 ireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR------ialARAl~~~p~IliLDE 562 (643)
+.||+.+.. ++++.+.+ .+....||+||+|| ++||||+..+|++++|||
T Consensus 93 ~~~~~~~~~-----~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 93 ILENVIFCH-----QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred Hhhceeeec-----hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 999997751 23333333 44567899999996 799999999999999999
Q ss_pred ccCCCCHHHHH-HHHHHHHHHcC--CCeEEEEccCchhHhhcCeEEEEeC
Q 006489 563 ATSALDAESEY-LVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSD 609 (643)
Q Consensus 563 ~TSaLD~~te~-~i~~~i~~~~~--~~TvI~VtHrl~~i~~aD~Iivl~~ 609 (643)
||++||+++.. .+.+.|+++.+ ++|+|+|||+++.+..||+|++|++
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999999988 99999988765 6899999999999999999999965
No 381
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=3.8e-27 Score=231.59 Aligned_cols=185 Identities=19% Similarity=0.248 Sum_probs=140.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHh-cc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLH-RK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr-~~ 474 (643)
.|+++|.- +|.+ ..+++++++ +.++|+|||||||||++++|. .++|.+. ...| ++
T Consensus 5 ~l~l~nfk-~~~~---~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYAG---EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKK 60 (212)
T ss_pred EEEEECcc-cCCC---CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhh
Confidence 47788765 6753 358899887 899999999999999999997 3355433 2233 57
Q ss_pred cEEEccCCCCCcc-cHHHHhhcCCCCCCCHHHH-----HHHHHH----cCchHHHHcCCCcccccccCCCCCCCHHHHHH
Q 006489 475 ISIVSQEPVLFNC-SIEENIAYGCDGKASSADI-----ENAAKM----ANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 544 (643)
Q Consensus 475 i~~V~Q~~~Lf~g-TireNI~~~~~~~~~~~~i-----~~al~~----a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQR 544 (643)
+++++|+..+++. |.++++.+... ....+.+ ...-.. .+-...+..||++.++.+ ..||+|||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~----~~lS~G~~~r 135 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQE-IIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI----SNLSGGEKTL 135 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEe-CCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch----hhcCHHHHHH
Confidence 9999999887764 88888877632 1111100 000000 011123556788887765 4799999999
Q ss_pred HHHHHHHc----cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeC
Q 006489 545 VAIARALM----MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 609 (643)
Q Consensus 545 ialARAl~----~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~ 609 (643)
++||||++ ++|++++|||||++||+++...+.+.++++.++.|+|+|||+.+..+.||+|++|..
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99999996 358999999999999999999999999998788899999999998999999999953
No 382
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=1.1e-27 Score=216.06 Aligned_cols=209 Identities=27% Similarity=0.415 Sum_probs=176.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 006489 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 476 (643)
Q Consensus 397 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 476 (643)
+.++||+.. .-|-.+|.++..||.+=+|||+|||||||+..+.|+. |-+|+|.++|.|+..++..++.++-+
T Consensus 4 ~qln~v~~~-------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeecccccc-------ccccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 566776542 2366789999999999999999999999999999986 68999999999999999999999999
Q ss_pred EEccC-CCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc--
Q 006489 477 IVSQE-PVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM-- 553 (643)
Q Consensus 477 ~V~Q~-~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~-- 553 (643)
|..|+ ...|...|..-+++..|.+.--+++.++|+..+++|. ++..-..||||++||+-||-.+++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DK-----------L~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccch-----------hhhhhhhcCcccceeeEEeEEEEEec
Confidence 99885 4579999999999986632233456667776666553 344457899999999999998885
Q ss_pred ---C--CCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCch-hHhhcCeEEEEeCCEEEEEcChhHHhhc
Q 006489 554 ---N--PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLS-TVQSADTVAVVSDGEIVESGTHEELLSK 624 (643)
Q Consensus 554 ---~--p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~-~i~~aD~Iivl~~G~Ive~G~~~eL~~~ 624 (643)
| .++||||||.+.||...+..+...|.++. .|.|||+..|+|+ |+++||++..++.|++..+|..+|.+..
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 3 37899999999999999988887777665 5899999999997 8999999999999999999999998754
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.94 E-value=2.9e-26 Score=265.30 Aligned_cols=104 Identities=35% Similarity=0.526 Sum_probs=93.4
Q ss_pred cccc-cccCCCCCCCHHHHHHHHHHHHHccCC---CEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh
Q 006489 525 KYQT-FVGERGVRLSGGQKQRVAIARALMMNP---RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ 599 (643)
Q Consensus 525 G~~T-~vge~G~~LSGGQrQRialARAl~~~p---~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~ 599 (643)
|++. .++.....||||||||++|||||+++| ++|||||||++||+++.+.+.+.|+++. +++|+|+|+|+++.++
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4443 367778899999999999999999999 9999999999999999999999998875 5789999999999999
Q ss_pred hcCeEEEE------eCCEEEEEcChhHHhhcCChH
Q 006489 600 SADTVAVV------SDGEIVESGTHEELLSKGGVY 628 (643)
Q Consensus 600 ~aD~Iivl------~~G~Ive~G~~~eL~~~~g~y 628 (643)
.||+|++| ++|+|++.|+++++.+....|
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~ 932 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY 932 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccH
Confidence 99999999 799999999999998765443
No 384
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=9.9e-26 Score=270.77 Aligned_cols=213 Identities=24% Similarity=0.340 Sum_probs=153.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHH---------HHHcCCCCCCC--------EEEE
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIAN---------LIERFYDPIKG--------KILL 458 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~---------lL~g~~~p~~G--------~I~i 458 (643)
.++++|++. ..|+|+||+|++||.++|+|+||||||||++ +|.|...+..+ -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 488888752 2699999999999999999999999999999 55564333211 2345
Q ss_pred CCEeCCCCCH----------HHHh---------ccc-----EEEccC------------------C--------------
Q 006489 459 NGVPLVEISH----------EHLH---------RKI-----SIVSQE------------------P-------------- 482 (643)
Q Consensus 459 dg~~i~~~~~----------~~lr---------~~i-----~~V~Q~------------------~-------------- 482 (643)
|-.++..-.. +.+| ++. .+.+|. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 5444432111 1333 111 122221 1
Q ss_pred ------CCC-cccHHHHhhcCCCCCC-----CHHHHHHHHHHcCchHHHHcCCCccccc-ccCCCCCCCHHHHHHHHHHH
Q 006489 483 ------VLF-NCSIEENIAYGCDGKA-----SSADIENAAKMANAHDFISNFPEKYQTF-VGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 483 ------~Lf-~gTireNI~~~~~~~~-----~~~~i~~al~~a~l~~~i~~lp~G~~T~-vge~G~~LSGGQrQRialAR 549 (643)
..+ .-||.||+.++.. ++ +.+++.+.++ .++.+ |++.. .+....+||||||||++|||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~-ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAr 822 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAY-EAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAY 822 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHH-HHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHH
Confidence 122 2489999988632 11 1223333332 12222 55543 57778899999999999999
Q ss_pred HHc---cCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEEEe------CCEEEEEcChh
Q 006489 550 ALM---MNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVS------DGEIVESGTHE 619 (643)
Q Consensus 550 Al~---~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl~------~G~Ive~G~~~ 619 (643)
||+ ++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|+|+++.++.||+|++|+ +|++++.|+++
T Consensus 823 aL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 823 ELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred HHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 998 6999999999999999999999999998865 4889999999999999999999996 79999999999
Q ss_pred HHhhcC
Q 006489 620 ELLSKG 625 (643)
Q Consensus 620 eL~~~~ 625 (643)
++.+..
T Consensus 903 el~~~~ 908 (1809)
T PRK00635 903 ELIHLH 908 (1809)
T ss_pred HHHhcc
Confidence 998644
No 385
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.4e-25 Score=237.21 Aligned_cols=217 Identities=25% Similarity=0.384 Sum_probs=171.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRK 474 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 474 (643)
-++++|++.. ..++|+||++++||.++|.|-.|||+|=|+++|.|..++.+|+|.+||+++.--++ +..+.-
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 3677776542 14789999999999999999999999999999999999999999999999987774 478888
Q ss_pred cEEEccCCC----CCcccHHHHhhcCCCCCCCHH-HHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHH
Q 006489 475 ISIVSQEPV----LFNCSIEENIAYGCDGKASSA-DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 549 (643)
Q Consensus 475 i~~V~Q~~~----Lf~gTireNI~~~~~~~~~~~-~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialAR 549 (643)
|+|||-|-. +..-||++||.+..-...... -+...-+.....+++..|.-.-..+ ...-.+||||-+|++.|||
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~-~~~v~~LSGGNQQKVvlar 414 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSP-EQPIGTLSGGNQQKVVLAR 414 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCc-cchhhcCCchhhhhHHHHH
Confidence 999998754 457899999987621111111 1333344444445666654221111 1234579999999999999
Q ss_pred HHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChhH
Q 006489 550 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 550 Al~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~e 620 (643)
.|..+|+||||||||-++|.-+.+.|.+.|+++. +|+++|+||-.+..+- .||||+||.+|+|+..=+.++
T Consensus 415 wL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999999999999999999875 5899999999998764 899999999999997544433
No 386
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=5.7e-26 Score=259.83 Aligned_cols=200 Identities=28% Similarity=0.455 Sum_probs=171.1
Q ss_pred CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEECCEeCCCCCHHHHhcccEEEccCCC-CCcc
Q 006489 411 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD--PIKGKILLNGVPLVEISHEHLHRKISIVSQEPV-LFNC 487 (643)
Q Consensus 411 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~--p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~-Lf~g 487 (643)
...+|+||+=-++||..+|++|+||||||||+++|+|--. ..+|+|+|||.+..+ +.+++.+|||.|++. +=.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 4568999999999999999999999999999999998642 257999999988765 789999999999765 5568
Q ss_pred cHHHHhhcCC----CCCCCHHH----HHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCC-CEE
Q 006489 488 SIEENIAYGC----DGKASSAD----IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP-RIL 558 (643)
Q Consensus 488 TireNI~~~~----~~~~~~~~----i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p-~Il 558 (643)
||||-+.|.. |.+.+++| ++++++..++.+. =|..||.-|..||..||.|+.||=-|+.|| .|+
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999998863 33444433 6778888777665 356789989999999999999999999999 899
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchh--HhhcCeEEEEeC-CEEEEEcChhH
Q 006489 559 LLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST--VQSADTVAVVSD-GEIVESGTHEE 620 (643)
Q Consensus 559 iLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~--i~~aD~Iivl~~-G~Ive~G~~~e 620 (643)
.||||||+||+.+...|.+.++++. .|+|++..=|+++. .+..|+++.|++ |+.|-.|+..+
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999999999999999998865 69999999999985 589999999964 89998887433
No 387
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.92 E-value=9e-26 Score=227.91 Aligned_cols=184 Identities=18% Similarity=0.176 Sum_probs=138.5
Q ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEe-C------CCCCHHHHhcccEEEccCCC--CCcccHHHHhh-c
Q 006489 426 SKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVP-L------VEISHEHLHRKISIVSQEPV--LFNCSIEENIA-Y 495 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~-i------~~~~~~~lr~~i~~V~Q~~~--Lf~gTireNI~-~ 495 (643)
..++|+||||||||||+.+|.+...+..|+++.++.+ + ...+.....-.+.+..|++. ++..+++++-. +
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999988878888765421 1 11112233445556556533 45555555432 1
Q ss_pred C-CCCCCCHHHHHHHHHHcCchHHHHc--CCCcccccccCCC---------CCCCHHHHHHHHHHHHHcc----CCCEEE
Q 006489 496 G-CDGKASSADIENAAKMANAHDFISN--FPEKYQTFVGERG---------VRLSGGQKQRVAIARALMM----NPRILL 559 (643)
Q Consensus 496 ~-~~~~~~~~~i~~al~~a~l~~~i~~--lp~G~~T~vge~G---------~~LSGGQrQRialARAl~~----~p~Ili 559 (643)
. +....+.+++.+.++.++++.+... +|+|.-+.+.+.. ..||||||||++||||++. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 1 1125678889999999998644222 3556655565543 7899999999999999975 489999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhHhhcCeEEEEeC
Q 006489 560 LDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQSADTVAVVSD 609 (643)
Q Consensus 560 LDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~VtHrl~~i~~aD~Iivl~~ 609 (643)
|||||++||+.+...+.+.|+++.+ +.|+|+|||+.+.++.||+|++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999998765 7899999999999999999999854
No 388
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=2.2e-24 Score=249.19 Aligned_cols=97 Identities=33% Similarity=0.533 Sum_probs=88.6
Q ss_pred cccc-cccCCCCCCCHHHHHHHHHHHHHcc---CCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh
Q 006489 525 KYQT-FVGERGVRLSGGQKQRVAIARALMM---NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ 599 (643)
Q Consensus 525 G~~T-~vge~G~~LSGGQrQRialARAl~~---~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~ 599 (643)
|++. .+++....|||||+||++|||+|.+ +|++|||||||++||+++...+.+.|+++. +++|+|+|+|++..++
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 4543 3678889999999999999999997 599999999999999999999999998875 5889999999999999
Q ss_pred hcCeEEEE------eCCEEEEEcChhHH
Q 006489 600 SADTVAVV------SDGEIVESGTHEEL 621 (643)
Q Consensus 600 ~aD~Iivl------~~G~Ive~G~~~eL 621 (643)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999999886
No 389
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.91 E-value=3.1e-23 Score=216.51 Aligned_cols=215 Identities=26% Similarity=0.438 Sum_probs=174.8
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeC-CCCCHHHHhc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPL-VEISHEHLHR 473 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i-~~~~~~~lr~ 473 (643)
.-++++|++..-+. ..+.+++|||++++||.++|.|-+|-|-|-|+.+|+|+.+|.+|+|.++|+|+ ...++..+|+
T Consensus 256 ~vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 256 VVLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred eEEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 34899999986432 34689999999999999999999999999999999999999999999999997 6778777766
Q ss_pred c-cEEEccCCC----CCcccHHHHhhcCCCCC--------CCHHHHHHHHHHcCchHHHHcC---CCcccccccCCCCCC
Q 006489 474 K-ISIVSQEPV----LFNCSIEENIAYGCDGK--------ASSADIENAAKMANAHDFISNF---PEKYQTFVGERGVRL 537 (643)
Q Consensus 474 ~-i~~V~Q~~~----Lf~gTireNI~~~~~~~--------~~~~~i~~al~~a~l~~~i~~l---p~G~~T~vge~G~~L 537 (643)
. ++|||.|.+ ..+-|+.||+.+..-.. .+..++.+.++. .++.+ +.+-+++ -.+|
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~-----li~~fdVr~~~~~~~----a~~L 404 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARE-----LIEEFDVRAPSPDAP----ARSL 404 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHH-----HHHHcCccCCCCCcc----hhhc
Confidence 5 999999874 57889999998874211 122333333322 22221 3333333 4689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEE
Q 006489 538 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVES 615 (643)
Q Consensus 538 SGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~ 615 (643)
|||+.||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +|+.|++|+-.|+.+ .-||+|.||.+|+|+..
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 9999999999999999999999999999999999999999886654 689999999999876 67999999999999987
Q ss_pred cChhH
Q 006489 616 GTHEE 620 (643)
Q Consensus 616 G~~~e 620 (643)
.+.++
T Consensus 485 ~~~~~ 489 (501)
T COG3845 485 VPPEE 489 (501)
T ss_pred ccccc
Confidence 77665
No 390
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.8e-23 Score=216.50 Aligned_cols=212 Identities=25% Similarity=0.348 Sum_probs=174.6
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
..+++.+|+|.|++. +.+.+.++++.++.-+++++||++|+||||+++++.+...|..|.+-+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~-~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPS-EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCc-chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 359999999999875 33799999999999999999999999999999999999999999998877 568
Q ss_pred cEEEccCCCCC-cccHHH--HhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH
Q 006489 475 ISIVSQEPVLF-NCSIEE--NIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 551 (643)
Q Consensus 475 i~~V~Q~~~Lf-~gTire--NI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl 551 (643)
|+|-.|.-.=| +-.+-. -+.--.| .-++++|++.|...|+...+..-| -..||||||-|+++|-+.
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~p-G~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFP-GKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACT 497 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCC-CCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHh
Confidence 99999965432 222211 1111112 348999999999998887766544 156999999999999999
Q ss_pred ccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEEEeCCEEEE-EcChhHHhhcCChHH
Q 006489 552 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVE-SGTHEELLSKGGVYT 629 (643)
Q Consensus 552 ~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Ive-~G~~~eL~~~~g~y~ 629 (643)
+.+|.+|||||||.+||.++-..+-++|+++ +--||+|||+.+++.. |+.+++.++|+|.. .|+.+ .|.
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~-------~yK 568 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGID-------KYK 568 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHH-------HHH
Confidence 9999999999999999999999999999887 5689999999999975 99999999999985 23322 377
Q ss_pred HHHHHHhcC
Q 006489 630 ALVKRQLQE 638 (643)
Q Consensus 630 ~l~~~q~~~ 638 (643)
++...+.+.
T Consensus 569 kl~~~e~~~ 577 (582)
T KOG0062|consen 569 KLLGAELRA 577 (582)
T ss_pred HHHHHHHhh
Confidence 787777654
No 391
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=2.4e-23 Score=218.15 Aligned_cols=218 Identities=23% Similarity=0.376 Sum_probs=146.7
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
..|.++|++++|++. ++++|+.|++.+|++++|+|++||||||+++++.|-..|..-++-+-=.+ +++.+..+..
T Consensus 74 ~dvk~~sls~s~~g~---~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~~a- 148 (614)
T KOG0927|consen 74 RDVKIESLSLSFHGV---ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEKQA- 148 (614)
T ss_pred ccceeeeeeeccCCc---eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchHHH-
Confidence 469999999999754 78999999999999999999999999999999999888866554321100 1111111100
Q ss_pred cEEEccCCCCCcccH-------HHHhhcCCCCCCCHH---HHHHHHHHcCchHHHH-----cCCCcccccc-cCCCCCCC
Q 006489 475 ISIVSQEPVLFNCSI-------EENIAYGCDGKASSA---DIENAAKMANAHDFIS-----NFPEKYQTFV-GERGVRLS 538 (643)
Q Consensus 475 i~~V~Q~~~Lf~gTi-------reNI~~~~~~~~~~~---~i~~al~~a~l~~~i~-----~lp~G~~T~v-ge~G~~LS 538 (643)
+-+ ...+..+. .|++.-..+ +.+.+ .+++-+...+.+.+=. -...|+.... -..-.+||
T Consensus 149 v~~----v~~~~~~e~~rle~~~E~l~~~~d-~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~S 223 (614)
T KOG0927|consen 149 VQA----VVMETDHERKRLEYLAEDLAQACD-DKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLS 223 (614)
T ss_pred HHH----HhhhhHHHHHHHHHHHHHHHhhcc-chhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccC
Confidence 000 00011111 122221111 11111 1122222222111100 0011332222 23457899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCC-eEEEEccCchhHhh-cCeEEEEeCCE-EEEE
Q 006489 539 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGR-TVLVIAHRLSTVQS-ADTVAVVSDGE-IVES 615 (643)
Q Consensus 539 GGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~-TvI~VtHrl~~i~~-aD~Iivl~~G~-Ive~ 615 (643)
||||-|++|||||+.+|++|+|||||.+||.++..-+.+-|.+. ++ |.++++|.-.++.. |-.|+.|++++ +...
T Consensus 224 gGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~--d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~ 301 (614)
T KOG0927|consen 224 GGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY--DRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYE 301 (614)
T ss_pred chHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc--cCceEEEEecchhhhhhHhhhhheecccceeeec
Confidence 99999999999999999999999999999999999999999775 45 89999999999965 99999999999 7789
Q ss_pred cChhHHhhc
Q 006489 616 GTHEELLSK 624 (643)
Q Consensus 616 G~~~eL~~~ 624 (643)
|+|++....
T Consensus 302 Gnydqy~~t 310 (614)
T KOG0927|consen 302 GNYDQYVKT 310 (614)
T ss_pred CCHHHHhhH
Confidence 999988754
No 392
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3e-23 Score=210.89 Aligned_cols=198 Identities=29% Similarity=0.393 Sum_probs=151.4
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
-+-++||+|.||+. .|.+++++|-|.--.+||||||+|.|||||+++|.|.++|+.|+.+=+- |=+|
T Consensus 586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 36799999999975 5899999999999999999999999999999999999999999987543 3478
Q ss_pred EEEccCCC--C-CcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc
Q 006489 476 SIVSQEPV--L-FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 552 (643)
Q Consensus 476 ~~V~Q~~~--L-f~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~ 552 (643)
|+-.|+.- | -.-|--|-+.-. -+.+.++.++++-..+|..-- .|. .-..||||||.|+++|--.+
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~--FNlpyq~ARK~LG~fGL~sHA-------HTi---kikdLSGGQKaRValaeLal 720 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRK--FNLPYQEARKQLGTFGLASHA-------HTI---KIKDLSGGQKARVALAELAL 720 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHh--cCCChHHHHHHhhhhhhhhcc-------ceE---eeeecCCcchHHHHHHHHhc
Confidence 88888653 1 133555555332 134445556666655553321 111 23579999999999999999
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcC-eEEEEeCCEEEE-EcChhH
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSAD-TVAVVSDGEIVE-SGTHEE 620 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD-~Iivl~~G~Ive-~G~~~e 620 (643)
+.||||||||||.+||.++-..+-++|++. +-.||+|||+-..+..-| ..+|+++-.|-| .|.+++
T Consensus 721 ~~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 721 GGPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred CCCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence 999999999999999999999999999986 568999999998886544 345666544433 344443
No 393
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=6.7e-23 Score=199.45 Aligned_cols=169 Identities=20% Similarity=0.192 Sum_probs=118.0
Q ss_pred eceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEE--CCEeCCCC-CHHHHhcccEEEccCCCCCcccHHHH
Q 006489 416 KGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILL--NGVPLVEI-SHEHLHRKISIVSQEPVLFNCSIEEN 492 (643)
Q Consensus 416 ~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~i--dg~~i~~~-~~~~lr~~i~~V~Q~~~Lf~gTireN 492 (643)
+++++++.+| ..+|+|+||||||||+.+|.-.+ .|+... .|..++++ ....-...|.++.|+.-++. |
T Consensus 13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l---~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~ 83 (198)
T cd03276 13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL---GGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N 83 (198)
T ss_pred eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh---cCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C
Confidence 5667777776 77999999999999999997433 222211 12211110 00112456888888876555 2
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH----ccCCCEEEEecccCCCC
Q 006489 493 IAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL----MMNPRILLLDEATSALD 568 (643)
Q Consensus 493 I~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl----~~~p~IliLDE~TSaLD 568 (643)
.....+.+++.++++. .+- ..+...+||||||||++||||+ +.+|+++||||||++||
T Consensus 84 ----~~~~~~~~~~~~~l~~----------~~~----~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD 145 (198)
T cd03276 84 ----PLCVLSQDMARSFLTS----------NKA----AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMD 145 (198)
T ss_pred ----cCCHHHHHHHHHHhcc----------ccc----cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccC
Confidence 0111122333333333 111 2334568999999999999999 69999999999999999
Q ss_pred HHHHHHHHHHHHHHcC----CCeEEEEccCchhHhhcCeEEEEeCCE
Q 006489 569 AESEYLVQDAMDSLMK----GRTVLVIAHRLSTVQSADTVAVVSDGE 611 (643)
Q Consensus 569 ~~te~~i~~~i~~~~~----~~TvI~VtHrl~~i~~aD~Iivl~~G~ 611 (643)
..+...+.+.|.+..+ ++|+|++||+++.+.++|+|-||..++
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 146 MVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 9999999999987643 358999999999999999999998754
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.1e-22 Score=211.95 Aligned_cols=201 Identities=23% Similarity=0.307 Sum_probs=148.0
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 474 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 474 (643)
.+|..++.+.+|.+ +.+|.+-++++..|-+.++||++|+|||||+++|.. |+|.+-.++ +++|.-
T Consensus 79 ~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~ 143 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGD 143 (582)
T ss_pred cceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheecc
Confidence 46999999999974 469999999999999999999999999999999998 444333321 011111
Q ss_pred cEEEccCCCCCcccHHHHhhcCCC---CCCCHHHHHH-HHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH
Q 006489 475 ISIVSQEPVLFNCSIEENIAYGCD---GKASSADIEN-AAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 550 (643)
Q Consensus 475 i~~V~Q~~~Lf~gTireNI~~~~~---~~~~~~~i~~-al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA 550 (643)
-....|+ .+-.+|-|.-+..-.+ ...+.+++.. ++.-.+..+.....|- ..||||=|-|++||||
T Consensus 144 ~t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLARA 212 (582)
T KOG0062|consen 144 DTEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALARA 212 (582)
T ss_pred chHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHHHH
Confidence 0111111 1233444444433211 0114455555 8888888888888774 5799999999999999
Q ss_pred HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cCeEEEEeCCEEE-EEcChhHHhh
Q 006489 551 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIV-ESGTHEELLS 623 (643)
Q Consensus 551 l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Iv-e~G~~~eL~~ 623 (643)
+.++||||+|||||..||..+-.-+.+.|..+ ..|+|+|+|+-+++.. |--||.+++=++- ..|++++..+
T Consensus 213 lf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 213 LFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred HhcCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 99999999999999999999999999999876 4899999999999965 8888898875542 2466655543
No 395
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.87 E-value=6.9e-22 Score=188.76 Aligned_cols=85 Identities=25% Similarity=0.259 Sum_probs=79.1
Q ss_pred HHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc----cCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-CCeEEEEcc
Q 006489 519 ISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM----MNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAH 593 (643)
Q Consensus 519 i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~----~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~VtH 593 (643)
+..+|+|..|++ ||||||||++|||++. .+|+++||||||++||+.+.+.+.+.+.++.+ ++|+|+|||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 778999999999 9999999999999984 79999999999999999999999999988754 489999999
Q ss_pred CchhHhhcCeEEEEeC
Q 006489 594 RLSTVQSADTVAVVSD 609 (643)
Q Consensus 594 rl~~i~~aD~Iivl~~ 609 (643)
+++.+..+|+++++++
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999999999999976
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.87 E-value=1.6e-21 Score=200.23 Aligned_cols=170 Identities=27% Similarity=0.401 Sum_probs=134.3
Q ss_pred ceeceeEEe-----eCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCC-CCcc
Q 006489 414 VLKGITLKL-----LSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPV-LFNC 487 (643)
Q Consensus 414 vL~~isl~i-----~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~-Lf~g 487 (643)
.+.+..|++ ..||.++++||+|-||||++++|+|.+.|++|+ ..+= +|+|=||-.. -|+|
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~-------------~vSyKPQyI~~~~~g 416 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDL-------------KVSYKPQYISPDYDG 416 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-Cccc-------------eEeecceeecCCCCC
Confidence 344555554 567899999999999999999999999999998 2111 7999999533 3999
Q ss_pred cHHHHhhcCCCCCCCHHHHH-HHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCC
Q 006489 488 SIEENIAYGCDGKASSADIE-NAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSA 566 (643)
Q Consensus 488 TireNI~~~~~~~~~~~~i~-~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSa 566 (643)
||++=+.-..+..+.+.-++ +.++-.++++.++ ..-.+||||+.||+|||-||.+++|+|+||||++.
T Consensus 417 tV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e-----------~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~ 485 (591)
T COG1245 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLE-----------RPVDELSGGELQRVAIAAALSREADLYLLDEPSAY 485 (591)
T ss_pred cHHHHHHHhhhhhcccchhHHhhcCccchHHHHh-----------cccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence 99998865433223333332 4555555555433 23457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHhh-cCeEEEEe
Q 006489 567 LDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVS 608 (643)
Q Consensus 567 LD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~~-aD~Iivl~ 608 (643)
||.+..-.+-++|++.. .++|.++|-|++-.+.. +|+++|.+
T Consensus 486 LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 486 LDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred ccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 99999999999998765 58899999999999875 89999996
No 397
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.86 E-value=2.9e-22 Score=200.14 Aligned_cols=196 Identities=19% Similarity=0.265 Sum_probs=141.1
Q ss_pred EEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE--EECCEeCCCCCHHHHhccc--EEEccCCCCCcccHHHHhhc
Q 006489 420 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI--LLNGVPLVEISHEHLHRKI--SIVSQEPVLFNCSIEENIAY 495 (643)
Q Consensus 420 l~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I--~idg~~i~~~~~~~lr~~i--~~V~Q~~~Lf~gTireNI~~ 495 (643)
+.+.+||+++|+|++|+|||||++.+.+.++...+++ .+-...-+..+..++.+.+ .+|-.+. +.+-...+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHHH
Confidence 5788999999999999999999999999987754332 3332222335555655554 1111110 0011111111
Q ss_pred CCCCCCCHHHHHHHH--HHcC-----chHHHHcCCCcccccccCCCCCCCHHH--------HHHHHHHHHHccCCCEEEE
Q 006489 496 GCDGKASSADIENAA--KMAN-----AHDFISNFPEKYQTFVGERGVRLSGGQ--------KQRVAIARALMMNPRILLL 560 (643)
Q Consensus 496 ~~~~~~~~~~i~~al--~~a~-----l~~~i~~lp~G~~T~vge~G~~LSGGQ--------rQRialARAl~~~p~IliL 560 (643)
. ...+..|. ...+ +-|.+..+|+++++.+++.|.++|||| +||+++||+++++++|.+|
T Consensus 88 ~------~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l 161 (249)
T cd01128 88 A------EMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII 161 (249)
T ss_pred H------HHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe
Confidence 0 00011111 1212 346799999999999999999999999 9999999999999999999
Q ss_pred ecccCCCCHHHHH--HHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHhhcCChHHHHHH
Q 006489 561 DEATSALDAESEY--LVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVK 633 (643)
Q Consensus 561 DE~TSaLD~~te~--~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~ 633 (643)
||+++|+.+|. .+.+.++. .++|.|+++||+++..++|.|.||++|++ |++++..++.|+.+++
T Consensus 162 --~T~~~d~~~~~~~~i~~~~~~--~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~~ 227 (249)
T cd01128 162 --ATALVDTGSRMDDVIFEEFKG--TGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMWL 227 (249)
T ss_pred --eeheecCCCcccchHHHHHhc--CCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHHH
Confidence 99999987665 34344433 57999999999999999999999999997 7889888888887755
No 398
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.85 E-value=1.5e-20 Score=174.34 Aligned_cols=212 Identities=21% Similarity=0.304 Sum_probs=157.2
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCC-CC-----
Q 006489 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE-IS----- 467 (643)
Q Consensus 394 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~-~~----- 467 (643)
+..|++.++.|+|+.. .|++-|+|+++|.|..+.+||.+|||||||+|+|.|-.-.-.|.|.+.|.+--. -+
T Consensus 11 ~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 3579999999999875 389999999999999999999999999999999999988888999999976533 11
Q ss_pred -----HHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHH
Q 006489 468 -----HEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 542 (643)
Q Consensus 468 -----~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQr 542 (643)
-.+|++..+.-- |..|.-+-=.+-+.|+-. ..+.++=++.++. +|-.+-=+-..+|-|||
T Consensus 89 dl~YLGgeW~~~~~~ag-evplq~D~sae~mifgV~-g~dp~Rre~LI~i-------------LDIdl~WRmHkvSDGqr 153 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAG-EVPLQGDISAEHMIFGVG-GDDPERREKLIDI-------------LDIDLRWRMHKVSDGQR 153 (291)
T ss_pred ceeEecccccccccccc-cccccccccHHHHHhhcc-CCChhHhhhhhhh-------------eeccceEEEeeccccch
Confidence 112333333222 222222211233334422 1222222222222 33334445578899999
Q ss_pred HHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhHh-hcCeEEEEeCCEEEEEcChh
Q 006489 543 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHE 619 (643)
Q Consensus 543 QRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i~-~aD~Iivl~~G~Ive~G~~~ 619 (643)
.|+.|+-.|++.=++|+|||.|--||...+..+.+-++... +++|+++.||-..-++ .+.+++.|.+|+++..-.++
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 99999999999999999999999999999999999887644 6899999999998775 58999999999999865555
Q ss_pred HHh
Q 006489 620 ELL 622 (643)
Q Consensus 620 eL~ 622 (643)
+..
T Consensus 234 ~i~ 236 (291)
T KOG2355|consen 234 KIK 236 (291)
T ss_pred hhh
Confidence 543
No 399
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.84 E-value=2.9e-20 Score=203.30 Aligned_cols=103 Identities=36% Similarity=0.548 Sum_probs=92.7
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHccCC---CEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeE
Q 006489 529 FVGERGVRLSGGQKQRVAIARALMMNP---RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTV 604 (643)
Q Consensus 529 ~vge~G~~LSGGQrQRialARAl~~~p---~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~I 604 (643)
.+|.-...||||+.|||-||.-|.+++ -+|||||||.+|-.+--+++++.|.++. +|.|||+|-|.|+.++.||.|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 368899999999999999999999988 9999999999999998888888887764 699999999999999999999
Q ss_pred EEE------eCCEEEEEcChhHHhhcCChHHHH
Q 006489 605 AVV------SDGEIVESGTHEELLSKGGVYTAL 631 (643)
Q Consensus 605 ivl------~~G~Ive~G~~~eL~~~~g~y~~l 631 (643)
+-| +.|+||.+|||+|+.+..+.|..-
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~ 927 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVKASYTGK 927 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCccchhHH
Confidence 998 579999999999999866666443
No 400
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.84 E-value=1e-20 Score=184.83 Aligned_cols=145 Identities=16% Similarity=0.175 Sum_probs=109.9
Q ss_pred eeceeEEeeCCC-EEEEECCCCChHHHHHHHHH--------cCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCC
Q 006489 415 LKGITLKLLSGS-KIALVGPSGGGKSTIANLIE--------RFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF 485 (643)
Q Consensus 415 L~~isl~i~~G~-~vaivG~sGsGKSTLl~lL~--------g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf 485 (643)
..++||++++|+ .++|+||||||||||++.|. |.+.|....+ .++|.+|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~-- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFA-- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEE--
Confidence 457899999996 69999999999999999998 6665543222 2444444421
Q ss_pred cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccC
Q 006489 486 NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS 565 (643)
Q Consensus 486 ~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TS 565 (643)
.++ .+..+.++-..+|+|+|||..|++++ .+|+++++||||+
T Consensus 78 --------~lg-----------------------------~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~ 119 (200)
T cd03280 78 --------DIG-----------------------------DEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGS 119 (200)
T ss_pred --------ecC-----------------------------chhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCC
Confidence 011 00011122357899999999999995 8999999999999
Q ss_pred CCCHHHHHHHHH-HHHHHc-CCCeEEEEccCchhHhhcCeEEEEeCCEEEEEc
Q 006489 566 ALDAESEYLVQD-AMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 616 (643)
Q Consensus 566 aLD~~te~~i~~-~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G 616 (643)
++|+.+...+.. .++.+. .++|+|++||..+..+.||++++|++|+++..+
T Consensus 120 glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 120 GTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 999998777754 455543 378999999998888999999999999998663
No 401
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=1e-20 Score=185.96 Aligned_cols=180 Identities=17% Similarity=0.170 Sum_probs=114.5
Q ss_pred eceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCC---Cccc----
Q 006489 416 KGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVL---FNCS---- 488 (643)
Q Consensus 416 ~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~L---f~gT---- 488 (643)
+++.++..+| ..+|+|++|||||||+.+|.-..-...... ... -..+++ +..=.++.++ |+..
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~-----~~~~~~---i~~g~~~~~v~~~~~~~~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRA-----KKVGEF---VKRGCDEGTIEIELYGNPGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccc-----cCHHHH---hhCCCCcEEEEEEEEeCCCcc
Confidence 3445555443 568999999999999999855442111000 000 011111 1110111111 1111
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHH----HccCCCEEEEeccc
Q 006489 489 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA----LMMNPRILLLDEAT 564 (643)
Q Consensus 489 ireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARA----l~~~p~IliLDE~T 564 (643)
..+|+++. .+.+.+.+++..... |.+..+|.+.+.. ......||||||||+.+|++ ++.+|+++|+||||
T Consensus 85 ~~~n~~~~----~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~ 158 (213)
T cd03277 85 QVDNLCQF----LPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEIN 158 (213)
T ss_pred ccCCceEE----EchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEeccc
Confidence 34555533 234455666666544 5566777766543 45678999999999887754 46899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcC--C-CeEEEEccCchhH-hhcC--eEEEEeCCE
Q 006489 565 SALDAESEYLVQDAMDSLMK--G-RTVLVIAHRLSTV-QSAD--TVAVVSDGE 611 (643)
Q Consensus 565 SaLD~~te~~i~~~i~~~~~--~-~TvI~VtHrl~~i-~~aD--~Iivl~~G~ 611 (643)
++||+.+.+.+.+.+.+..+ + .|+|+|||++... ..|| +|++|++|+
T Consensus 159 ~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 159 QGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred ccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99999999999999988754 3 4799999998544 4555 788888775
No 402
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=1.2e-20 Score=216.67 Aligned_cols=207 Identities=27% Similarity=0.379 Sum_probs=173.1
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC---CCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCc-c
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP---IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN-C 487 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p---~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-g 487 (643)
..+|+|+|.-++||+.+.+.||.|||||||+++|.|-.+- ..|+|.+||.+.+++-. ++.++|.+|+...|. -
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 4689999999999999999999999999999999998754 35799999999999887 888999999988885 7
Q ss_pred cHHHHhhcCCC--------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCC-CCCCCHHHHHHHHHHHHHccCCCEE
Q 006489 488 SIEENIAYGCD--------GKASSADIENAAKMANAHDFISNFPEKYQTFVGER-GVRLSGGQKQRVAIARALMMNPRIL 558 (643)
Q Consensus 488 TireNI~~~~~--------~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~-G~~LSGGQrQRialARAl~~~p~Il 558 (643)
||||-|.|... ++.++.|..++....-+ -+-.|.+..||.||.+ ....|||||.|+++|-++..++.++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~l--kilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~ 282 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLL--KILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASIL 282 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHH--HHhCchhhccceecccccccccCcccceeeeeeeeecCccee
Confidence 99999988631 12334443332111111 1335667899999975 5689999999999999999999999
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCch--hHhhcCeEEEEeCCEEEEEcChhHHhh
Q 006489 559 LLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLS--TVQSADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 559 iLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~--~i~~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
.+||+|-+||+.|.-+|.++|+++. -+.|.++.=|+.+ +..-.|.|++|.+|+++-+|+.++.+.
T Consensus 283 ~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 283 FWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 9999999999999999999998764 3778888888875 578899999999999999999988754
No 403
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=5.7e-20 Score=188.61 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCE
Q 006489 536 RLSGGQKQRVAIARALMM----NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGE 611 (643)
Q Consensus 536 ~LSGGQrQRialARAl~~----~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~ 611 (643)
.|||||+||++|||+++. +|+++||||||++||+.+...+.+.+.++.+++|+|+|||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997653 9999999999999999999999999998878899999999999999999999998874
No 404
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.81 E-value=2.8e-19 Score=166.33 Aligned_cols=208 Identities=27% Similarity=0.375 Sum_probs=166.5
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC----CCCEEEECCEeCCCCCHHHHhc----ccEEEccCCC
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP----IKGKILLNGVPLVEISHEHLHR----KISIVSQEPV 483 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p----~~G~I~idg~~i~~~~~~~lr~----~i~~V~Q~~~ 483 (643)
..+.+++|++...||.-++||.||||||-++|.++|...- +.-..++|++|+-.+++...|+ .|++++|+|.
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence 4578999999999999999999999999999999998743 3556678889999999888776 4789999997
Q ss_pred CC-c--cc----HHHHhhcCCCC-------CCCHHHHHHHHHHcCchH--HHH-cCCCcccccccCCCCCCCHHHHHHHH
Q 006489 484 LF-N--CS----IEENIAYGCDG-------KASSADIENAAKMANAHD--FIS-NFPEKYQTFVGERGVRLSGGQKQRVA 546 (643)
Q Consensus 484 Lf-~--gT----ireNI~~~~~~-------~~~~~~i~~al~~a~l~~--~i~-~lp~G~~T~vge~G~~LSGGQrQRia 546 (643)
-. + .+ +-+||-.+.-. .....+..+.++.+++.| +|+ +.| ..|--|+-|++.
T Consensus 100 sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP-----------~ElTeGE~QKVM 168 (330)
T COG4170 100 SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP-----------YELTEGECQKVM 168 (330)
T ss_pred hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc-----------chhccCcceeee
Confidence 43 2 22 34566443100 112345678889999854 443 444 335667889999
Q ss_pred HHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhH-hhcCeEEEEeCCEEEEEcChhHHhh
Q 006489 547 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 623 (643)
Q Consensus 547 lARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~~i-~~aD~Iivl~~G~Ive~G~~~eL~~ 623 (643)
||-|+..+|++||-||||.++|+.|...|...+.++- .+.|+++++|++.++ +.||+|-||--|+-+|.+.-++|++
T Consensus 169 IA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 169 IAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred eehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhc
Confidence 9999999999999999999999999999999886654 477999999999998 5699999999999999999999997
Q ss_pred c-CChHHH
Q 006489 624 K-GGVYTA 630 (643)
Q Consensus 624 ~-~g~y~~ 630 (643)
. .-.|..
T Consensus 249 ~PhHPYTq 256 (330)
T COG4170 249 MPHHPYTQ 256 (330)
T ss_pred CCCCchHH
Confidence 5 455643
No 405
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.80 E-value=4.5e-19 Score=180.21 Aligned_cols=199 Identities=26% Similarity=0.410 Sum_probs=153.0
Q ss_pred CCCCcEEEEeEEEECCCC-----------------------CCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcC
Q 006489 392 DQDGEVELDDVWFAYPSR-----------------------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF 448 (643)
Q Consensus 392 ~~~~~I~~~~vsf~Y~~~-----------------------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~ 448 (643)
...+.+.|++++..|.+. -+.++|+|+||+|+||+.++|||+|||||||++++++|.
T Consensus 353 ~L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 353 KLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred ccCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHH
Confidence 345568888887766331 024689999999999999999999999999999999986
Q ss_pred --------CCCCCCEEEECCEeCCCCCHHHHhcccEEEcc--CCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHH
Q 006489 449 --------YDPIKGKILLNGVPLVEISHEHLHRKISIVSQ--EPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDF 518 (643)
Q Consensus 449 --------~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q--~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~ 518 (643)
|.|++|.|.+--..++ +.+|- ||.+=.-||.|.+.-- .-|-..-.+++..+++.|-
T Consensus 433 ~~~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~Ep~f~~~tilehl~s~---tGD~~~AveILnraGlsDA 498 (593)
T COG2401 433 QKGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYEPEFGEVTILEHLRSK---TGDLNAAVEILNRAGLSDA 498 (593)
T ss_pred hhcccccccCCCCCceeccccchh-----------hccCcccccccCchhHHHHHhhc---cCchhHHHHHHHhhccchh
Confidence 6899999987543222 22333 3444345777877421 1222345688999998775
Q ss_pred HHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCch
Q 006489 519 ISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLS 596 (643)
Q Consensus 519 i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~--~~~TvI~VtHrl~ 596 (643)
+-- . ..=..||-|||-|..||+++...|.+++-||.-|+||+.|...+...|.++. .+.|.++||||.+
T Consensus 499 vly-----R----r~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE 569 (593)
T COG2401 499 VLY-----R----RKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE 569 (593)
T ss_pred hhh-----h----ccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 321 1 1225689999999999999999999999999999999999999999998876 6889999999999
Q ss_pred hHhh--cCeEEEEeCCEEE
Q 006489 597 TVQS--ADTVAVVSDGEIV 613 (643)
Q Consensus 597 ~i~~--aD~Iivl~~G~Iv 613 (643)
.+.. -|+++.+.=|+..
T Consensus 570 v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 570 VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHhccCCceeEEeeccccc
Confidence 9875 5999888766654
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.80 E-value=4e-19 Score=214.28 Aligned_cols=202 Identities=21% Similarity=0.273 Sum_probs=143.8
Q ss_pred ceeceeEEeeCCCEEEEECCCCChHHHHHHHHH------cC---CCCCCCEEEECCEeCCCCC----------HHHHhcc
Q 006489 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIE------RF---YDPIKGKILLNGVPLVEIS----------HEHLHRK 474 (643)
Q Consensus 414 vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~------g~---~~p~~G~I~idg~~i~~~~----------~~~lr~~ 474 (643)
-|+|++++||-|..++|.|.||||||||++=.+ .+ .+..+--|.||-.||..-+ -+.+|+-
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999998554 11 1333445778877774322 2334544
Q ss_pred cEEEcc------CCCC----------------------------------------------------------CcccHH
Q 006489 475 ISIVSQ------EPVL----------------------------------------------------------FNCSIE 490 (643)
Q Consensus 475 i~~V~Q------~~~L----------------------------------------------------------f~gTir 490 (643)
.|-.|+ .+-. ++.||.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 432222 1111 222222
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC---CCEEEEecccCCC
Q 006489 491 ENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN---PRILLLDEATSAL 567 (643)
Q Consensus 491 eNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~---p~IliLDE~TSaL 567 (643)
|-+.|+.. . .++.+. .+.+..+--||-+ +|..-..|||||.|||-||..|.++ +.+|||||||.+|
T Consensus 1665 ea~~~F~~--~--~~i~~~------L~~L~~vGLgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GL 1733 (1809)
T PRK00635 1665 EVAETFPF--L--KKIQKP------LQALIDNGLGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSL 1733 (1809)
T ss_pred HHHHHhhc--c--HHHHHH------HHHHHHcCCCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCC
Confidence 22222210 0 011111 1122333335543 6899999999999999999999976 7899999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEEE------eCCEEEEEcChhHHhhcCC
Q 006489 568 DAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------SDGEIVESGTHEELLSKGG 626 (643)
Q Consensus 568 D~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl------~~G~Ive~G~~~eL~~~~g 626 (643)
+++.-+.+.+.++++. .+.|+|+|.|++..++.||.|+-| +.|+||.+||++|+.+...
T Consensus 1734 h~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~ 1799 (1809)
T PRK00635 1734 DNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKD 1799 (1809)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCC
Confidence 9998888889988764 689999999999999999999999 4689999999999987543
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.78 E-value=4.4e-19 Score=167.28 Aligned_cols=135 Identities=27% Similarity=0.364 Sum_probs=99.8
Q ss_pred eEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE-EEccCCCCCcccHHHHhhcCC
Q 006489 419 TLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS-IVSQEPVLFNCSIEENIAYGC 497 (643)
Q Consensus 419 sl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~-~V~Q~~~Lf~gTireNI~~~~ 497 (643)
++.+.++..+.|+||+||||||+++.+.-..-..+|.+.... +. +.+ .+|+...-| .+
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~--------i~-- 73 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL--------IF-- 73 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE--------eh--
Confidence 444555679999999999999999997655544555444311 00 111 122221111 00
Q ss_pred CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc----CCCEEEEecccCCCCHHHHH
Q 006489 498 DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM----NPRILLLDEATSALDAESEY 573 (643)
Q Consensus 498 ~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~----~p~IliLDE~TSaLD~~te~ 573 (643)
+. ..||+||+||++|||+|.. +|+++|||||++++|++...
T Consensus 74 ------------------------------~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~ 118 (162)
T cd03227 74 ------------------------------TR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQ 118 (162)
T ss_pred ------------------------------he-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHH
Confidence 00 0199999999999999986 78999999999999999999
Q ss_pred HHHHHHHHHcC-CCeEEEEccCchhHhhcCeEEEEeC
Q 006489 574 LVQDAMDSLMK-GRTVLVIAHRLSTVQSADTVAVVSD 609 (643)
Q Consensus 574 ~i~~~i~~~~~-~~TvI~VtHrl~~i~~aD~Iivl~~ 609 (643)
.+.+.+.+... ++|+|++||+++..+.+|++++|+.
T Consensus 119 ~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 119 ALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 99999877643 5899999999999999999999964
No 408
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.76 E-value=1.8e-18 Score=178.05 Aligned_cols=190 Identities=24% Similarity=0.359 Sum_probs=135.5
Q ss_pred eEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEE-----------ECCEeCCCCCHH
Q 006489 401 DVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL-----------LNGVPLVEISHE 469 (643)
Q Consensus 401 ~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~-----------idg~~i~~~~~~ 469 (643)
++.-+|... ...|-.+- ..++|+.++|+|++|-||||-++.|.|...|.=|.-- +.|..+.++=..
T Consensus 79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 456677542 23344332 3579999999999999999999999999999877531 111111111000
Q ss_pred ----HH--hcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH
Q 006489 470 ----HL--HRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 543 (643)
Q Consensus 470 ----~l--r~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ 543 (643)
.+ -.++-||.-=|..+.||++|=+.-.++ . -...++.+..+|.+. +...-..||||+-|
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de-~---g~~devve~l~L~nv-----------l~r~v~~LSGGELQ 220 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE-R---GKFDEVVERLGLENV-----------LDRDVSELSGGELQ 220 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhhh-c---CcHHHHHHHhcchhh-----------hhhhhhhcCchHHH
Confidence 01 113445555677888888888754322 1 124445555555443 33345679999999
Q ss_pred HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhHhh-cCeEEEEe
Q 006489 544 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQS-ADTVAVVS 608 (643)
Q Consensus 544 RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~VtHrl~~i~~-aD~Iivl~ 608 (643)
|+|||-|+.|++|+|++|||||-||-...-..-+.|+++.+ +++||+|-|+|..+.. +|.|-++-
T Consensus 221 r~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 221 RVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 99999999999999999999999999999888889999887 6999999999999975 88887774
No 409
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.75 E-value=2.6e-18 Score=170.00 Aligned_cols=153 Identities=20% Similarity=0.147 Sum_probs=114.0
Q ss_pred CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE-EEccCCCCCcccH
Q 006489 411 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS-IVSQEPVLFNCSI 489 (643)
Q Consensus 411 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~-~V~Q~~~Lf~gTi 489 (643)
...+.+|+++++++++.+.|.|||||||||+++.+.- ..+..++| |||.+...+. +
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~ 72 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--I 72 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--c
Confidence 3478999999999999999999999999999999981 13344555 6776642211 1
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH--ccCCCEEEEecc---c
Q 006489 490 EENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL--MMNPRILLLDEA---T 564 (643)
Q Consensus 490 reNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl--~~~p~IliLDE~---T 564 (643)
.| +.+...++.+.+ ..++|.|++|+..+|+++ +.+|+++||||| |
T Consensus 73 ~~----------------~il~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT 122 (222)
T cd03285 73 VD----------------CILARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGT 122 (222)
T ss_pred cc----------------eeEeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCC
Confidence 11 112222222211 356899999999999999 899999999999 9
Q ss_pred CCCCHHHHHH-HHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcC
Q 006489 565 SALDAESEYL-VQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 617 (643)
Q Consensus 565 SaLD~~te~~-i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~ 617 (643)
+.+|+.+... +.+.+.+ ..++|+|++||..+..+.||++..+++|++...++
T Consensus 123 ~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 123 STYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred ChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 9999985543 3355543 24799999999766677899999999999987654
No 410
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=1e-17 Score=171.43 Aligned_cols=190 Identities=19% Similarity=0.226 Sum_probs=122.1
Q ss_pred eceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCC---------------------------------------CC--
Q 006489 416 KGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI---------------------------------------KG-- 454 (643)
Q Consensus 416 ~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~---------------------------------------~G-- 454 (643)
++.++++.+| .++|+|+|||||||++.+|.-+.... +|
T Consensus 13 ~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~~ 91 (270)
T cd03242 13 AELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGGR 91 (270)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCce
Confidence 4456666665 68899999999999998874332110 11
Q ss_pred EEEECCEeCCC-CCHHHHhcccEEEccCCCCCcccHHHHhhcCCC--CCCCH------HHHHHHHHHcCchHHHHcCCCc
Q 006489 455 KILLNGVPLVE-ISHEHLHRKISIVSQEPVLFNCSIEENIAYGCD--GKASS------ADIENAAKMANAHDFISNFPEK 525 (643)
Q Consensus 455 ~I~idg~~i~~-~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~--~~~~~------~~i~~al~~a~l~~~i~~lp~G 525 (643)
.+.+||..++. -+...+-..|.+.|++..|+.++-.+-..|.+. ..... +++.++++.- +.+.+-|+.
T Consensus 92 ~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~---~~~~~g~~~ 168 (270)
T cd03242 92 KARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQR---NALLKGPHR 168 (270)
T ss_pred EEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH---HHHhCCCCh
Confidence 34566766654 122233445777788888885544444333211 01111 1222332221 112225776
Q ss_pred ccccccCCCC----CCCHHHHHHHHHHHHHc---------cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEc
Q 006489 526 YQTFVGERGV----RLSGGQKQRVAIARALM---------MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIA 592 (643)
Q Consensus 526 ~~T~vge~G~----~LSGGQrQRialARAl~---------~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~Vt 592 (643)
.+..+.-++. -+|+||+|+++|||+|. ++|+++||||||++||+.....+.+.+.+. . .+++++
T Consensus 169 d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~--~-q~ii~~ 245 (270)
T cd03242 169 DDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR--V-QTFVTT 245 (270)
T ss_pred hheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC--C-CEEEEe
Confidence 6666544443 37999999999999974 799999999999999999999999999775 2 455555
Q ss_pred cCchhHhh-c---CeEEEEeCCEE
Q 006489 593 HRLSTVQS-A---DTVAVVSDGEI 612 (643)
Q Consensus 593 Hrl~~i~~-a---D~Iivl~~G~I 612 (643)
|....+.+ | ++|+.|++|+|
T Consensus 246 ~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 246 TDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred CCchhccchhccCccEEEEeCcEE
Confidence 55544433 4 78999999986
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=1.8e-17 Score=192.19 Aligned_cols=95 Identities=32% Similarity=0.482 Sum_probs=87.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCC--CEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEE
Q 006489 530 VGERGVRLSGGQKQRVAIARALMMNP--RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAV 606 (643)
Q Consensus 530 vge~G~~LSGGQrQRialARAl~~~p--~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iiv 606 (643)
++.....|||||+||++|||||..+| ++|||||||++||+++.+.+.+.|+++. +++|||+|+|+++.++.||+|++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 46677899999999999999999986 8999999999999999999999998874 47899999999999999999999
Q ss_pred E------eCCEEEEEcChhHHhhc
Q 006489 607 V------SDGEIVESGTHEELLSK 624 (643)
Q Consensus 607 l------~~G~Ive~G~~~eL~~~ 624 (643)
| ++|+|+.+|+++++...
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred ecccccCCCCEEeeccCHHHHhcC
Confidence 9 99999999999998643
No 412
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.72 E-value=4.6e-18 Score=145.75 Aligned_cols=75 Identities=24% Similarity=0.240 Sum_probs=72.1
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHH
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEEN 492 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireN 492 (643)
++|++++|++++|+.++|+||||||||||++++. +|++.++|.|+..++.++.++.++|+||+ +|++|||||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 6899999999999999999999999999999986 89999999999999999999999999999 999999999
Q ss_pred hhc
Q 006489 493 IAY 495 (643)
Q Consensus 493 I~~ 495 (643)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 987
No 413
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.72 E-value=2e-17 Score=192.15 Aligned_cols=100 Identities=27% Similarity=0.450 Sum_probs=90.0
Q ss_pred ccccc-ccCCCCCCCHHHHHHHHHHHHHccCC--CEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh
Q 006489 525 KYQTF-VGERGVRLSGGQKQRVAIARALMMNP--RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS 600 (643)
Q Consensus 525 G~~T~-vge~G~~LSGGQrQRialARAl~~~p--~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~ 600 (643)
|++.. ....-.+|||||+|||+|||||..+| ++|||||||++||++....+.+.|+++. +++|+|+|+|+++.+..
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 45433 45667899999999999999999997 9999999999999999999999998875 47899999999999999
Q ss_pred cCeEEEE------eCCEEEEEcChhHHhhc
Q 006489 601 ADTVAVV------SDGEIVESGTHEELLSK 624 (643)
Q Consensus 601 aD~Iivl------~~G~Ive~G~~~eL~~~ 624 (643)
||+|++| ++|+|+.+|+++++.+.
T Consensus 557 aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 557 ADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998654
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.70 E-value=4.8e-17 Score=159.30 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=102.9
Q ss_pred eeEEeeCCCEEEEECCCCChHHHHHHHHHc-CCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcC
Q 006489 418 ITLKLLSGSKIALVGPSGGGKSTIANLIER-FYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYG 496 (643)
Q Consensus 418 isl~i~~G~~vaivG~sGsGKSTLl~lL~g-~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~ 496 (643)
.++++.+|++++|+|||||||||+++++.+ .+.+..|...- . .+..+++..|....|+ ..++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~----------~~~~i~~~dqi~~~~~--~~d~---- 84 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A----------ESASIPLVDRIFTRIG--AEDS---- 84 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c----------cccccCCcCEEEEEec--Cccc----
Confidence 355666899999999999999999999994 32222232110 0 1123333322211111 0011
Q ss_pred CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHH
Q 006489 497 CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQ 576 (643)
Q Consensus 497 ~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~ 576 (643)
+.++-..+|++++| +..+-++..+|+++||||||+++|+.....+.
T Consensus 85 ---------------------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 85 ---------------------------------ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred ---------------------------------ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 11222345666665 77777888999999999999999998666554
Q ss_pred HH-HHHHc-CCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHH
Q 006489 577 DA-MDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 577 ~~-i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL 621 (643)
.. ++.+. .++|+|++||+.+.++.+|++..+++|++.++++..++
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 44 33332 47899999999999999999999999999998875444
No 415
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.69 E-value=4.8e-17 Score=158.25 Aligned_cols=141 Identities=18% Similarity=0.235 Sum_probs=97.0
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCC-cccHH
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF-NCSIE 490 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf-~gTir 490 (643)
+++++|++|+ +|+.++|+||||||||||+++|.+... +..+|.++..- .++.|...+| .-|++
T Consensus 14 ~~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 4678888766 579999999999999999999987542 23456554321 3566755565 57999
Q ss_pred HHhhcCCCCCCCHHH---HHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCC
Q 006489 491 ENIAYGCDGKASSAD---IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSAL 567 (643)
Q Consensus 491 eNI~~~~~~~~~~~~---i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaL 567 (643)
||+.++.. ...++ +.++++.+++ ++|+++|+||||+++
T Consensus 78 d~l~~~~s--~~~~e~~~~~~iL~~~~~-------------------------------------~~p~llllDEp~~gl 118 (199)
T cd03283 78 DDLRDGIS--YFYAELRRLKEIVEKAKK-------------------------------------GEPVLFLLDEIFKGT 118 (199)
T ss_pred hccccccC--hHHHHHHHHHHHHHhccC-------------------------------------CCCeEEEEecccCCC
Confidence 99988742 22222 2233333220 799999999999999
Q ss_pred CHHHHHHHHH-HHHHHc-CCCeEEEEccCchhHhhc---CeEEEE
Q 006489 568 DAESEYLVQD-AMDSLM-KGRTVLVIAHRLSTVQSA---DTVAVV 607 (643)
Q Consensus 568 D~~te~~i~~-~i~~~~-~~~TvI~VtHrl~~i~~a---D~Iivl 607 (643)
|+.+...+.. .++.+. ++.|+|++||+++.+... ++|-.+
T Consensus 119 D~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 119 NSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 9997665443 344432 478999999999887654 444443
No 416
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.68 E-value=2e-16 Score=193.79 Aligned_cols=118 Identities=25% Similarity=0.301 Sum_probs=105.9
Q ss_pred CCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHH------HHHHHHHHccCCCE
Q 006489 484 LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ------RVAIARALMMNPRI 557 (643)
Q Consensus 484 Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQ------RialARAl~~~p~I 557 (643)
.|+||++|||.+ +| +.+++ +.|++.++.++|+..+|.| ||.++.+| .||||||| |++||||++.+|+|
T Consensus 1153 ~~~~~~~~~i~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~i 1226 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RS-DADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGI 1226 (1311)
T ss_pred HcCccHHHHhhc-CC-CCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCE
Confidence 489999999999 66 67776 7999999999999999999 99999886 89999999 99999999999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHc------CCCeEEEEccCchhHhh------cCeEEEE
Q 006489 558 LLLDEATSALDAESEYLVQDAMDSLM------KGRTVLVIAHRLSTVQS------ADTVAVV 607 (643)
Q Consensus 558 liLDE~TSaLD~~te~~i~~~i~~~~------~~~TvI~VtHrl~~i~~------aD~Iivl 607 (643)
|+|||||++||+.+...+.+.|..+. .+.|+|+|||++..+.. ||+.+-+
T Consensus 1227 l~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606 1227 IALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRL 1288 (1311)
T ss_pred EEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeee
Confidence 99999999999999999998887653 36799999999998863 5777755
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.65 E-value=3.6e-16 Score=158.16 Aligned_cols=142 Identities=20% Similarity=0.310 Sum_probs=105.1
Q ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCC-HHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHH
Q 006489 426 SKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS-HEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSA 504 (643)
Q Consensus 426 ~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~-~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~ 504 (643)
+.++|+|++|||||||+++|.|++.|.+|+|.++|+++..++ ..++...++++||+..--.-++.||. + + .
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~-k---~ 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----P-K---A 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----h-H---H
Confidence 678999999999999999999999999999999999998775 67788889999997632223333331 1 1 0
Q ss_pred HHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC
Q 006489 505 DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK 584 (643)
Q Consensus 505 ~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~ 584 (643)
+ + -..++|+ .+|+++|+|||++ +..+...++.+..
T Consensus 184 ~--------~-----------------------------~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~ 218 (270)
T TIGR02858 184 E--------G-----------------------------MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHA 218 (270)
T ss_pred H--------H-----------------------------HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhC
Confidence 0 0 1455666 4999999999974 2334344444446
Q ss_pred CCeEEEEccCchh--H------------hhcCeEEEEeCCEEEEEcChhHHh
Q 006489 585 GRTVLVIAHRLST--V------------QSADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 585 ~~TvI~VtHrl~~--i------------~~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
++|+|+++|..+. + ..+|++++|++|+ ..|+.+++.
T Consensus 219 G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 219 GVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred CCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 9999999997665 3 3479999999886 567766543
No 418
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.7e-15 Score=154.78 Aligned_cols=197 Identities=21% Similarity=0.389 Sum_probs=135.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCC--CCCCCEEEECCEeCCCCCHHHHhc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY--DPIKGKILLNGVPLVEISHEHLHR 473 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~--~p~~G~I~idg~~i~~~~~~~lr~ 473 (643)
.|.++|.+.+-. .+..+.|.||.|-.|-++++|||+|-|||||++-|.--- -|..=.
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnID------------------ 322 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNID------------------ 322 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCc------------------
Confidence 478888777654 346889999999999999999999999999999886421 222222
Q ss_pred ccEEEccCCCCCcccHHHHhhcCCC------------------CCCC-HHHHHH---HHHHcCch-------HHHHcCCC
Q 006489 474 KISIVSQEPVLFNCSIEENIAYGCD------------------GKAS-SADIEN---AAKMANAH-------DFISNFPE 524 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~gTireNI~~~~~------------------~~~~-~~~i~~---al~~a~l~-------~~i~~lp~ 524 (643)
+-|+.|+..-=+.|--+.++-.+. .+.+ .+++.+ -+++.+++ ..+.. -
T Consensus 323 -vLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAG--L 399 (807)
T KOG0066|consen 323 -VLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAG--L 399 (807)
T ss_pred -eEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhh--c
Confidence 344455544333333333322110 0000 111221 12222221 11222 2
Q ss_pred cccccccCCC-CCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh-cC
Q 006489 525 KYQTFVGERG-VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-AD 602 (643)
Q Consensus 525 G~~T~vge~G-~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~-aD 602 (643)
|++-.+-++. ..+|||=|-|++|||||+-.|-+|.|||||.+||-..---+.+.+..+ .+|.++|+|+-.++.+ |.
T Consensus 400 GFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCt 477 (807)
T KOG0066|consen 400 GFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCT 477 (807)
T ss_pred CCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHH
Confidence 6666666665 479999999999999999999999999999999998877777778776 6899999999999976 99
Q ss_pred eEEEEeCCEEE-EEcCh
Q 006489 603 TVAVVSDGEIV-ESGTH 618 (643)
Q Consensus 603 ~Iivl~~G~Iv-e~G~~ 618 (643)
.||.+|+-+.- ..|+|
T Consensus 478 dIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 478 DIIHLDNQKLHYYRGNY 494 (807)
T ss_pred HHhhhhhhhhhhhcchH
Confidence 99999987653 24555
No 419
>PRK00064 recF recombination protein F; Reviewed
Probab=99.58 E-value=2.7e-14 Score=151.79 Aligned_cols=76 Identities=26% Similarity=0.350 Sum_probs=66.5
Q ss_pred CCCCHHHHHHHHHHHHHc---------cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhh---cC
Q 006489 535 VRLSGGQKQRVAIARALM---------MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS---AD 602 (643)
Q Consensus 535 ~~LSGGQrQRialARAl~---------~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~---aD 602 (643)
..+|+||+|+++||+++. ++|||++||||+|.||+.....+.+.+.+. ++++++.||....+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 578999999999999885 799999999999999999999998888653 5689999998876654 46
Q ss_pred eEEEEeCCEE
Q 006489 603 TVAVVSDGEI 612 (643)
Q Consensus 603 ~Iivl~~G~I 612 (643)
+++.|++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 420
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.57 E-value=7.5e-15 Score=144.77 Aligned_cols=154 Identities=19% Similarity=0.213 Sum_probs=104.3
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-CCCEEEECCEeCCCCCHHHHhcccEEEccCCCCC-cccH
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF-NCSI 489 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf-~gTi 489 (643)
+.+.+|++|++++ ++++|+|||||||||+++.+.+..-. ..|. . ++ ..+.++++++| +| .-++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~------~---vp--~~~~~i~~~~~---i~~~~~~ 82 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGS------F---VP--ASKAEIGVVDR---IFTRIGA 82 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCC------e---ec--cccceecceee---EeccCCc
Confidence 4688899999887 99999999999999999999764311 1121 1 11 11235666654 23 2355
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHH--ccCCCEEEEecc---c
Q 006489 490 EENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL--MMNPRILLLDEA---T 564 (643)
Q Consensus 490 reNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl--~~~p~IliLDE~---T 564 (643)
+||+..+.. -=...+..|++++ ..+|+++||||| |
T Consensus 83 ~~~ls~g~s----------------------------------------~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 83 SDDLAGGRS----------------------------------------TFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhhhccCcc----------------------------------------hHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 555554411 1111223344444 469999999999 9
Q ss_pred CCCCHHH-HHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHH
Q 006489 565 SALDAES-EYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 621 (643)
Q Consensus 565 SaLD~~t-e~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL 621 (643)
+++|... ...+.+.+.+. .++|+|++||..+..+.+|++..+++|++...++.+++
T Consensus 123 ~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 123 STYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred ChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 9999874 34555556442 37899999999988888998888888998877665554
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.55 E-value=9.7e-15 Score=145.07 Aligned_cols=171 Identities=23% Similarity=0.299 Sum_probs=103.5
Q ss_pred ceeEEeeCCCEEEEECCCCChHHHHHHHH-HcCCCCCCCEEEECCEeCCCC------CHHHHhcccEEEccCCCC-----
Q 006489 417 GITLKLLSGSKIALVGPSGGGKSTIANLI-ERFYDPIKGKILLNGVPLVEI------SHEHLHRKISIVSQEPVL----- 484 (643)
Q Consensus 417 ~isl~i~~G~~vaivG~sGsGKSTLl~lL-~g~~~p~~G~I~idg~~i~~~------~~~~lr~~i~~V~Q~~~L----- 484 (643)
+..+.+.+ ..++|+||+||||||++.+| .-+.....-.. .+...+++ ........|....+++--
T Consensus 17 ~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~--r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~ 93 (220)
T PF02463_consen 17 NAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSF--RGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELD 93 (220)
T ss_dssp EEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTT--T-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSS
T ss_pred eEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccc--ccccccccccccccccccccccccccccccccccccc
Confidence 45555544 59999999999999999999 44442111000 01111111 111222234443332211
Q ss_pred -----CcccHHH-H-hhcC-CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH----HHHc
Q 006489 485 -----FNCSIEE-N-IAYG-CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA----RALM 552 (643)
Q Consensus 485 -----f~gTire-N-I~~~-~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA----RAl~ 552 (643)
...++.. + -.+. +....+.+++.+.+....+... .||||||-+++|| ..-+
T Consensus 94 ~~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~-----------------~lSgGEk~~~~Lal~lA~~~~ 156 (220)
T PF02463_consen 94 KKEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE-----------------FLSGGEKSLVALALLLALQRY 156 (220)
T ss_dssp SSEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT-----------------GS-HHHHHHHHHHHHHHHHTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccc-----------------ccccccccccccccccccccc
Confidence 1111100 0 0111 1123456667777766655443 8999999999997 3345
Q ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEE
Q 006489 553 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV 607 (643)
Q Consensus 553 ~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl 607 (643)
.++|++||||+.++||......+.+.|++..+++-+|++||+..+...||+.+.+
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7889999999999999999999999999998889999999999999999999876
No 422
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.55 E-value=2.4e-14 Score=139.60 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=96.6
Q ss_pred CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE-EEccCCCCCcccH
Q 006489 411 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS-IVSQEPVLFNCSI 489 (643)
Q Consensus 411 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~-~V~Q~~~Lf~gTi 489 (643)
++++.+|++|++++|+.++|.|||||||||+++.+.++. +..++| +||-+. ..-++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccC
Confidence 357899999999999999999999999999999998773 222222 222221 12244
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCH
Q 006489 490 EENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDA 569 (643)
Q Consensus 490 reNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~ 569 (643)
.|||... +. .+..+.++-.++|+|++|+ ..+-++..+|+++|||||++++|+
T Consensus 72 ~d~I~~~-------------------------~~--~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 72 FNRLLSR-------------------------LS--NDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred hhheeEe-------------------------cC--CccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 5555221 11 1111334457889999975 455557889999999999999999
Q ss_pred HH-HHHHHHHHHHHc-CCCeEEEEccCchhHhhcC
Q 006489 570 ES-EYLVQDAMDSLM-KGRTVLVIAHRLSTVQSAD 602 (643)
Q Consensus 570 ~t-e~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD 602 (643)
.. .....+.++.+. .++++|++||..+.++.++
T Consensus 124 ~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 124 ADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 74 333333343332 4889999999999887643
No 423
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.53 E-value=5.1e-14 Score=144.22 Aligned_cols=196 Identities=21% Similarity=0.335 Sum_probs=141.1
Q ss_pred EEECCCCCCCcceeceeEEeeCCC-----EEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEE
Q 006489 403 WFAYPSRPNHMVLKGITLKLLSGS-----KIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISI 477 (643)
Q Consensus 403 sf~Y~~~~~~~vL~~isl~i~~G~-----~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 477 (643)
.++||+ .+..+-+..|.|+.|+ .+...|.+|-||||+++.++|..+|++|. ++..+ +++|
T Consensus 342 ~y~Yp~--m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSy 406 (592)
T KOG0063|consen 342 RYSYPK--MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSY 406 (592)
T ss_pred eeccCc--ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceec
Confidence 367875 3467889999999886 57889999999999999999999998763 22222 5888
Q ss_pred EccCCC-CCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 006489 478 VSQEPV-LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 556 (643)
Q Consensus 478 V~Q~~~-Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~ 556 (643)
=||... =|.+|+|.=+. +.+|.+...-+...++.+ |-..+..++..-.+||||+.||+|||-+|=+.++
T Consensus 407 kpqkispK~~~tvR~ll~---------~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKpAd 476 (592)
T KOG0063|consen 407 KPQKISPKREGTVRQLLH---------TKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKPAD 476 (592)
T ss_pred cccccCccccchHHHHHH---------HHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCc
Confidence 888643 58899988662 122332222222222222 3334444555668999999999999999999999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHH--cCCCeEEEEccCchhHh-hcCeEEEEeC--CEEEEEcChhHHhh
Q 006489 557 ILLLDEATSALDAESEYLVQDAMDSL--MKGRTVLVIAHRLSTVQ-SADTVAVVSD--GEIVESGTHEELLS 623 (643)
Q Consensus 557 IliLDE~TSaLD~~te~~i~~~i~~~--~~~~TvI~VtHrl~~i~-~aD~Iivl~~--G~Ive~G~~~eL~~ 623 (643)
+|+.|||.+-||++.+..--..+++. ..++|-.+|-|.+-... .||+++|.+. ....-.-+++.|+.
T Consensus 477 vYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~ 548 (592)
T KOG0063|consen 477 VYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLA 548 (592)
T ss_pred eEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHH
Confidence 99999999999999776655555543 25899999999987664 5999999864 33333445555554
No 424
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.52 E-value=1.5e-14 Score=164.08 Aligned_cols=106 Identities=29% Similarity=0.459 Sum_probs=91.2
Q ss_pred HHHHHHHHcCchHHHHcCCCcccccccCCC------CCCCHHHHHHHHHHHHHc----------cCCCEEEEeccc-CCC
Q 006489 505 DIENAAKMANAHDFISNFPEKYQTFVGERG------VRLSGGQKQRVAIARALM----------MNPRILLLDEAT-SAL 567 (643)
Q Consensus 505 ~i~~al~~a~l~~~i~~lp~G~~T~vge~G------~~LSGGQrQRialARAl~----------~~p~IliLDE~T-SaL 567 (643)
.+.+.|+..+. ++...+|+++++.+++.| .+||||||||++||||++ .+|+++|||||| ++|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~l 510 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGAL 510 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCccc
Confidence 34555555543 445568999999999988 689999999999999987 599999999998 789
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeC-CEE
Q 006489 568 DAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD-GEI 612 (643)
Q Consensus 568 D~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~-G~I 612 (643)
|+.+...+.+.|..+ +++|+|+|||+......||++++|++ |+.
T Consensus 511 d~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 511 DAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred chhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 999999999999988 78999999999999999999999986 543
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.45 E-value=1.2e-12 Score=140.78 Aligned_cols=177 Identities=21% Similarity=0.290 Sum_probs=127.8
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEC---CEeCCC-----CCHHHHhcccEEEccCCC
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLN---GVPLVE-----ISHEHLHRKISIVSQEPV 483 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~id---g~~i~~-----~~~~~lr~~i~~V~Q~~~ 483 (643)
..+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+. |.++.+ ++...+++.|.+|.+..
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~- 223 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD- 223 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC-
Confidence 4579999 9999999999999999999999999999999999999995 444443 35556788888886532
Q ss_pred CCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCC-CCCCCHHHHHH-HHHHHHHccCCCEEEEe
Q 006489 484 LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGER-GVRLSGGQKQR-VAIARALMMNPRILLLD 561 (643)
Q Consensus 484 Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~-G~~LSGGQrQR-ialARAl~~~p~IliLD 561 (643)
+..-+++..+.-.+.+.|+... +|.|-.+-=+ =.++- |.|| |++ ...+||
T Consensus 224 ----------------~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~A--~A~rEisl---~~ge~P----- 275 (438)
T PRK07721 224 ----------------QPALMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRVA--MAQREIGL---AVGEPP----- 275 (438)
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHHH--HHHHHHHH---hcCCCC-----
Confidence 2234556666666666677664 3665544311 11110 1111 111 112333
Q ss_pred cccCCCCHHHHHHHHHHHHHHc---CCC-----eEEEEccCchhHhhcCeEEEEeCCEEEEEcChhH
Q 006489 562 EATSALDAESEYLVQDAMDSLM---KGR-----TVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 562 E~TSaLD~~te~~i~~~i~~~~---~~~-----TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~e 620 (643)
.|+++|+.....+.+.+++.. +|. ||++.+|+++. +-||++.+|.+|+|+..++-.+
T Consensus 276 -~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 276 -TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred -ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 589999999998888887765 465 99999999995 8899999999999999887543
No 426
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.38 E-value=3.4e-12 Score=125.63 Aligned_cols=136 Identities=20% Similarity=0.216 Sum_probs=92.4
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHH--cCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCc--cc
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIE--RFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN--CS 488 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~--g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~--gT 488 (643)
.|-.|+++.=..+.+++|+||+|+||||+++.+. ..+ +..|...... ..+++|.+|...-++ .|
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 4455565542223789999999999999999998 333 5566654322 125777777643221 12
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCC
Q 006489 489 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALD 568 (643)
Q Consensus 489 ireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD 568 (643)
+.+++ ..| --+-||+++|+++..+|+++|||||++++|
T Consensus 85 i~~~~----------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd 122 (213)
T cd03281 85 VSSGQ----------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTD 122 (213)
T ss_pred hhhcc----------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCC
Confidence 22111 011 234599999999999999999999999999
Q ss_pred HH-HHHHHHHHHHHHcC----CCeEEEEccCchhHhhcC
Q 006489 569 AE-SEYLVQDAMDSLMK----GRTVLVIAHRLSTVQSAD 602 (643)
Q Consensus 569 ~~-te~~i~~~i~~~~~----~~TvI~VtHrl~~i~~aD 602 (643)
+. ......+.++.+.+ +.++|++||.++.++...
T Consensus 123 ~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 123 TEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 87 45555556665542 248999999999987653
No 427
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.36 E-value=1.4e-12 Score=146.94 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=72.2
Q ss_pred CCCCHHHHHHHHHHHHHccC----CCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCC
Q 006489 535 VRLSGGQKQRVAIARALMMN----PRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDG 610 (643)
Q Consensus 535 ~~LSGGQrQRialARAl~~~----p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G 610 (643)
..+||||+||++|||+++.. |+++||||||++||+.+...+.+.|.++.+++|+|+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 46899999999999999875 69999999999999999999999999988899999999999999999999999987
Q ss_pred E
Q 006489 611 E 611 (643)
Q Consensus 611 ~ 611 (643)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 5
No 428
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.35 E-value=2.1e-12 Score=127.84 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccc-----CCCCHHHHHHHHHHHHHH
Q 006489 540 GQKQRVAIARALMMNPRILLLDEAT-----SALDAESEYLVQDAMDSL 582 (643)
Q Consensus 540 GQrQRialARAl~~~p~IliLDE~T-----SaLD~~te~~i~~~i~~~ 582 (643)
-|+|++.|||+++.+|++++||||| ++||+.+.+.+.+.++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 4999999999999999999999999 999999999999999876
No 429
>PRK10869 recombination and repair protein; Provisional
Probab=99.33 E-value=3.5e-12 Score=142.40 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=71.6
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCE
Q 006489 536 RLSGGQKQRVAIARALMM----NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGE 611 (643)
Q Consensus 536 ~LSGGQrQRialARAl~~----~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~ 611 (643)
.+||||+||++|||+++. +|+++|||||+++||..+...+.+.|+++.+++|+|+|||.++.+..||++++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 579999999999999996 5899999999999999999999999999878899999999999999999999998754
No 430
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.32 E-value=1.7e-12 Score=125.10 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=52.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcc--CCCEEEEecccCCCCHHHHHHHH-HHHHHHc--CCCeEEEEccCchhHhhcCe
Q 006489 532 ERGVRLSGGQKQRVAIARALMM--NPRILLLDEATSALDAESEYLVQ-DAMDSLM--KGRTVLVIAHRLSTVQSADT 603 (643)
Q Consensus 532 e~G~~LSGGQrQRialARAl~~--~p~IliLDE~TSaLD~~te~~i~-~~i~~~~--~~~TvI~VtHrl~~i~~aD~ 603 (643)
++-..||+|++| +++++.. +|+++|+|||++++|+.....+. ..++.+. .++++|++||..+..+.+|+
T Consensus 57 ~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 57 QGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred ccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 344678888877 4555555 99999999999999999655554 4445443 37899999999987777775
No 431
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.32 E-value=5.8e-12 Score=145.17 Aligned_cols=151 Identities=17% Similarity=0.211 Sum_probs=98.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCC-CEEEEECCCCChHHHHHHHHHcC-CCCCCCEEEECCEeCCCCCHHHHhc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSG-SKIALVGPSGGGKSTIANLIERF-YDPIKGKILLNGVPLVEISHEHLHR 473 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G-~~vaivG~sGsGKSTLl~lL~g~-~~p~~G~I~idg~~i~~~~~~~lr~ 473 (643)
.+.++++..-+-.. .. .-.+|+++.++ +.++|+||||+||||+++.+.+. +.+..|
T Consensus 295 ~i~l~~~rhPll~~-~~--~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G------------------- 352 (771)
T TIGR01069 295 KIILENARHPLLKE-PK--VVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG------------------- 352 (771)
T ss_pred CEEEccccCceecC-Cc--eEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC-------------------
Confidence 57777765422111 00 11368888877 89999999999999999999987 344333
Q ss_pred ccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc
Q 006489 474 KISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 553 (643)
Q Consensus 474 ~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~ 553 (643)
.+||..... .-.+.+++.. ...+++ .+.++-.+||+|++|+..+++++ .
T Consensus 353 --~~Vpa~~~~-~~~~~d~i~~----~i~~~~-----------------------si~~~LStfS~~m~~~~~il~~~-~ 401 (771)
T TIGR01069 353 --IPIPANEHS-EIPYFEEIFA----DIGDEQ-----------------------SIEQNLSTFSGHMKNISAILSKT-T 401 (771)
T ss_pred --CCccCCccc-cccchhheee----ecChHh-----------------------HHhhhhhHHHHHHHHHHHHHHhc-C
Confidence 144443310 0012333321 111110 11223466899999999999987 7
Q ss_pred CCCEEEEecccCCCCHHHHHHHH-HHHHHHc-CCCeEEEEccCchhHh
Q 006489 554 NPRILLLDEATSALDAESEYLVQ-DAMDSLM-KGRTVLVIAHRLSTVQ 599 (643)
Q Consensus 554 ~p~IliLDE~TSaLD~~te~~i~-~~i~~~~-~~~TvI~VtHrl~~i~ 599 (643)
+|+++|||||++++|+..-..+. ..+..+. +++++|++||..+...
T Consensus 402 ~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 402 ENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred CCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 89999999999999999666664 3444432 5889999999987643
No 432
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.30 E-value=1.1e-11 Score=136.75 Aligned_cols=154 Identities=28% Similarity=0.390 Sum_probs=109.3
Q ss_pred CCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHH---HHHHHHHc-CchHHHHcCCCcccc
Q 006489 453 KGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSAD---IENAAKMA-NAHDFISNFPEKYQT 528 (643)
Q Consensus 453 ~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~---i~~al~~a-~l~~~i~~lp~G~~T 528 (643)
.=.|.++|.+|.++. .-+|+|-..|...-+.++.+ ....++.. .-..|+...--||-|
T Consensus 413 al~v~i~g~~i~e~~------------------~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLt 474 (935)
T COG0178 413 ALAVKIAGKNIAEIS------------------EMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLT 474 (935)
T ss_pred hheeEECCccHHHHh------------------hccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCccc
Confidence 336889997776654 33455555554321222222 22222221 112455555555555
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHccC--CCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEE
Q 006489 529 FVGERGVRLSGGQKQRVAIARALMMN--PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVA 605 (643)
Q Consensus 529 ~vge~G~~LSGGQrQRialARAl~~~--p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Ii 605 (643)
. .....+|||||.|||-||+.+-++ -=+||||||+.+|-+.--.++.+.|+++. .|.|+|+|-|+.++++.||+|+
T Consensus 475 L-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iI 553 (935)
T COG0178 475 L-SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHII 553 (935)
T ss_pred c-cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEE
Confidence 4 344679999999999999999876 36789999999999885555556766554 4899999999999999999999
Q ss_pred EE------eCCEEEEEcChhHHhhcC
Q 006489 606 VV------SDGEIVESGTHEELLSKG 625 (643)
Q Consensus 606 vl------~~G~Ive~G~~~eL~~~~ 625 (643)
=| ..|+||.+|+++|++++.
T Consensus 554 DiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 554 DIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred eeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 98 579999999999999875
No 433
>PRK11098 microcin B17 transporter; Reviewed
Probab=99.30 E-value=4.9e-08 Score=103.76 Aligned_cols=282 Identities=13% Similarity=0.054 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 82 ASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHL 161 (643)
Q Consensus 82 ~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 161 (643)
...+++......+.+.|.+...-..+.. .....++..+..++.+.++...+..+..|+..+...+.+..|...+.++-
T Consensus 104 ~v~l~V~~n~w~~~FydaLq~al~~~~~--~d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~~W 181 (409)
T PRK11098 104 LVQVSVAVNAWYAPFYDLIQTALSSPGK--VTIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMAHW 181 (409)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHhccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566667777766531000000 01233344444555555555666667778777777788877888777766
Q ss_pred hcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHH
Q 006489 162 INQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKL-------------TLLALVVV 228 (643)
Q Consensus 162 l~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-------------~l~~l~~~ 228 (643)
++.. ..+ .-=+|++.|+.++.+........++.++++++..+.+++.++..+ ..++++..
T Consensus 182 l~~r--~ie-----nPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiya 254 (409)
T PRK11098 182 QKLR--HIE-----GAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWS 254 (409)
T ss_pred HhcC--CCC-----CccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHH
Confidence 6543 122 235899999999999988888899999999999999999888763 23333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 229 PAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGL 308 (643)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (643)
.+-..+..++++++.+++.+.++..+.....+.-.=++.+ +.+.++.++..++..+...+............
T Consensus 255 i~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE--------~~E~~~L~~~F~~V~~N~~rl~~~~~~l~~f~ 326 (409)
T PRK11098 255 LFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD--------RATPPTVRELFSNVRKNYFRLYFHYMYFNIAR 326 (409)
T ss_pred HHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555677888888888877777777765543333333 22333333333333333333322222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 006489 309 NAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSS 380 (643)
Q Consensus 309 ~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~ 380 (643)
..-..+..++-..+.+.....|++|.|.+......+.++..+++.+.+.+..+.+-.+..+|+.++.+..++
T Consensus 327 ~~y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~l~~ 398 (409)
T PRK11098 327 ILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAALDG 398 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444445556888899999999999999999999999999999999999999999999998876543
No 434
>PRK13695 putative NTPase; Provisional
Probab=99.30 E-value=2e-12 Score=123.46 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=66.3
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEec--ccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCC
Q 006489 533 RGVRLSGGQKQRVAIARALMMNPRILLLDE--ATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDG 610 (643)
Q Consensus 533 ~G~~LSGGQrQRialARAl~~~p~IliLDE--~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G 610 (643)
....+||+++-++.+++..+++|+++++|| |+.++|....+.+.+++ + .++++|+|+|.-..-..+|+|..+.+|
T Consensus 75 ~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~--~~~~~i~v~h~~~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 75 YVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-D--SEKPVIATLHRRSVHPFVQEIKSRPGG 151 (174)
T ss_pred EEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-h--CCCeEEEEECchhhHHHHHHHhccCCc
Confidence 345699999999999999999999999999 55566655556665555 2 489999999996666789999999999
Q ss_pred EEEEE
Q 006489 611 EIVES 615 (643)
Q Consensus 611 ~Ive~ 615 (643)
+|.+-
T Consensus 152 ~i~~~ 156 (174)
T PRK13695 152 RVYEL 156 (174)
T ss_pred EEEEE
Confidence 99886
No 435
>PRK12369 putative transporter; Reviewed
Probab=99.29 E-value=8.9e-08 Score=99.81 Aligned_cols=283 Identities=17% Similarity=0.101 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 79 LLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLF 158 (643)
Q Consensus 79 ~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 158 (643)
.+.....++....+.+.+.|.+......|.. .....++..+..+.++.++...+.....|+..+.+.+....|...+.
T Consensus 26 ~l~~v~~~v~~n~w~~~fy~aL~~~~~~~~~--~~~~~f~~~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l 103 (326)
T PRK12369 26 LWYQVSLNVAINEWYGDFYDLLQKAKIEPNN--HTAGDFWASILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYL 103 (326)
T ss_pred HHHHHHHhhhhhHHhHHHHHHHHHhhcCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666777777776542100000 01334444555555556666667777888888888888888888888
Q ss_pred HHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------------HHHH
Q 006489 159 SHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTL------------LALV 226 (643)
Q Consensus 159 ~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l------------~~l~ 226 (643)
++-+...- .-|+. =+|++.|+..+.+........++.++++++....+++.+++.+.+ ++++
T Consensus 104 ~~wl~~~~-~iDNP-----DQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aii 177 (326)
T PRK12369 104 KFWRNKRD-NIEGS-----SQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALL 177 (326)
T ss_pred HHHhcCCC-CCCCc-----cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHH
Confidence 88876431 12222 289999999999999988899999999999999999988755533 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 227 VVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQE-KNEISRYSEKVDETLKLGLQQAKVVGLFF 305 (643)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (643)
...+...+..++++++.+++.+.++..+.....+.-.=++-+. + .| +...+++.+..++..+...+..+. .
T Consensus 178 yai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~-~E~~~l~~~f~~v~~n~~~~~~~~~~l----~ 249 (326)
T PRK12369 178 ISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---Y-AKPETLIELFTGLRFNYFRLFLHYGYF----N 249 (326)
T ss_pred HHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---h-hhHHHHHHHHHHHHHHHHHHHHHHHhH----H
Confidence 3444445556778888888777777766666544322111111 1 12 233344444444433333332222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006489 306 GGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 377 (643)
Q Consensus 306 ~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~ 377 (643)
........+..++-..+.++....|+++.|.+......+..+..++..+...+..+.+-.+..+|+.++.+.
T Consensus 250 ~~~~~y~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~~ 321 (326)
T PRK12369 250 IWLISFSQMMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEKN 321 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444445556888899999999999999999999999999999999999999999999998764
No 436
>PRK14079 recF recombination protein F; Provisional
Probab=99.27 E-value=6.6e-11 Score=125.24 Aligned_cols=76 Identities=21% Similarity=0.223 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHHHHHc---------cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEE
Q 006489 535 VRLSGGQKQRVAIARALM---------MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVA 605 (643)
Q Consensus 535 ~~LSGGQrQRialARAl~---------~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Ii 605 (643)
.-+|+||+++++||+.|. .+|||++||||+|.||......+.+.|... ..+.|.-| +.-..+|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~--~q~~it~t---~~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL--PQAIVAGT---EAPPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC--CcEEEEcC---CCCCCCceEE
Confidence 357999999999999998 899999999999999999988888888553 23444433 3456789999
Q ss_pred EEeCCEEEEE
Q 006489 606 VVSDGEIVES 615 (643)
Q Consensus 606 vl~~G~Ive~ 615 (643)
++++|++...
T Consensus 337 ~~~~~~~~~~ 346 (349)
T PRK14079 337 RIEAGVFTPE 346 (349)
T ss_pred EEeccEecCC
Confidence 9999987644
No 437
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.26 E-value=1.3e-11 Score=121.75 Aligned_cols=138 Identities=17% Similarity=0.177 Sum_probs=84.8
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHc-CCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHH
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIER-FYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIE 490 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g-~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTir 490 (643)
+++.+|+++.+.+|++++|.||+|+||||+++.+.+ .+.+..|.....- . -+++|.+|=- ..-...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~----------~~~~~~~~i~--~~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S----------ATLSIFDSVL--TRMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c----------eEEeccceEE--EEecCc
Confidence 478999999999999999999999999999999999 7778888754322 1 1333332211 111122
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHH
Q 006489 491 ENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 570 (643)
Q Consensus 491 eNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~ 570 (643)
|++.-+.. .+ ..|+ +|++-.=.-..+++++|||||.++.|+.
T Consensus 85 d~~~~~~S-tF-~~e~------------------------------------~~~~~il~~~~~~sLvllDE~~~gT~~~ 126 (222)
T cd03287 85 DSIQHGMS-TF-MVEL------------------------------------SETSHILSNCTSRSLVILDELGRGTSTH 126 (222)
T ss_pred cccccccc-hH-HHHH------------------------------------HHHHHHHHhCCCCeEEEEccCCCCCChh
Confidence 22221110 00 1112 1111111123578999999996666544
Q ss_pred ---H-HHHHHHHHHHHcCCCeEEEEccCchhHhhc
Q 006489 571 ---S-EYLVQDAMDSLMKGRTVLVIAHRLSTVQSA 601 (643)
Q Consensus 571 ---t-e~~i~~~i~~~~~~~TvI~VtHrl~~i~~a 601 (643)
+ ...+.+.+.+. +++|+|++||..+.....
T Consensus 127 d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 127 DGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred hHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 3 23344444443 478999999999886544
No 438
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=99.26 E-value=5.7e-08 Score=100.00 Aligned_cols=226 Identities=15% Similarity=0.108 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 76 TVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRK 155 (643)
Q Consensus 76 ~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 155 (643)
+++.++...+++....+.+.+.+.+.... ...++..++.++++.+..+++.....|+...++.+....+..
T Consensus 33 l~l~l~~~~lsv~~~~~~g~~~~aL~~~d---------~~~f~~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~ 103 (281)
T PF06472_consen 33 LLLLLARVYLSVRINFWNGDFYNALQQKD---------LQAFWRLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTR 103 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhcC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556667777777788888776542 233444555556666677777788888888889999999999
Q ss_pred HHHHHHhcCChhhhcc-CC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHH
Q 006489 156 NLFSHLINQEIAFYDV-TR---TGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTL-LALVVVPA 230 (643)
Q Consensus 156 ~~~~~ll~~~~~~~~~-~~---~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l-~~l~~~~l 230 (643)
.+.++.++-. .||.- .. ..+.=+|++.|++.+.+.....+..++..++.++.....++..++++++ ++++..++
T Consensus 104 ~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~ 182 (281)
T PF06472_consen 104 HLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAIL 182 (281)
T ss_pred HHHHHHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 9999988877 44442 22 3466789999999999999999999999999999999999999888887 66666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 231 ISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNA 310 (643)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (643)
...+..++++...++..+.++..+..........++.+.|-.++.|+.+.++..+..++..+...+..+....+......
T Consensus 183 ~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~ 262 (281)
T PF06472_consen 183 GTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLGFFTNF 262 (281)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999998888877777766666665555444
Q ss_pred H
Q 006489 311 A 311 (643)
Q Consensus 311 ~ 311 (643)
.
T Consensus 263 ~ 263 (281)
T PF06472_consen 263 Y 263 (281)
T ss_pred H
Confidence 4
No 439
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.23 E-value=1.7e-11 Score=127.66 Aligned_cols=143 Identities=18% Similarity=0.239 Sum_probs=100.5
Q ss_pred eeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCC
Q 006489 418 ITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGC 497 (643)
Q Consensus 418 isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~ 497 (643)
+++.+++|+.++|+|++|||||||+++|+++++|..|.+.++ |..++.... +..+.++.+... + +.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~~-------~----~~ 202 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKGG-------Q----GL 202 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCCC-------C----Cc
Confidence 456788999999999999999999999999999999988885 344443322 222322221100 0 00
Q ss_pred CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHH
Q 006489 498 DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQD 577 (643)
Q Consensus 498 ~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~ 577 (643)
...+. .=.++++|-.+||++++|||.+ .+. .+
T Consensus 203 -~~~~~----------------------------------------~~~l~~~Lr~~pd~ii~gE~r~---~e~----~~ 234 (308)
T TIGR02788 203 -AKVTP----------------------------------------KDLLQSCLRMRPDRIILGELRG---DEA----FD 234 (308)
T ss_pred -CccCH----------------------------------------HHHHHHHhcCCCCeEEEeccCC---HHH----HH
Confidence 01111 1245667788999999999996 232 33
Q ss_pred HHHHHcCCC-eEEEEccCchhHhhcCeEEEEeCCEEEEEcChhHHh
Q 006489 578 AMDSLMKGR-TVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELL 622 (643)
Q Consensus 578 ~i~~~~~~~-TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~eL~ 622 (643)
.++....+. +++.++|..+.....||+..|..|+++..|...+.+
T Consensus 235 ~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 235 FIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 444433444 569999999988889999999999999888888766
No 440
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.22 E-value=2.1e-11 Score=125.35 Aligned_cols=171 Identities=24% Similarity=0.352 Sum_probs=119.9
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEE-----------ECCEeCCCC----CHHHHhc--ccEEEccCCCCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL-----------LNGVPLVEI----SHEHLHR--KISIVSQEPVLF 485 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~-----------idg~~i~~~----~~~~lr~--~i~~V~Q~~~Lf 485 (643)
+||+..++||.+|-||||-++.|+|-.+|.-|.-- ..|-++.++ ..+.++. ..-||.|=|..-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 58999999999999999999999999999776421 111111111 1111111 223555556666
Q ss_pred cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccC
Q 006489 486 NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS 565 (643)
Q Consensus 486 ~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TS 565 (643)
.|++.+++.--.+ .+...+++...+|...+. ..-..||||+-||.+||-+..+++|++++|||.|
T Consensus 178 k~~v~~~l~~~~~----r~~~~~~~~~~~L~~~~~-----------re~~~lsggelqrfaia~~~vq~advyMFDEpSs 242 (592)
T KOG0063|consen 178 KGTVGSLLDRKDE----RDNKEEVCDQLDLNNLLD-----------REVEQLSGGELQRFAIAMVCVQKADVYMFDEPSS 242 (592)
T ss_pred HHHHHHHHHHHhh----cccHHHHHHHHHHhhHHH-----------hhhhhcccchhhhhhhhhhhhhhcceeEecCCcc
Confidence 6777777743221 122334444444433221 1235789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEe
Q 006489 566 ALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVS 608 (643)
Q Consensus 566 aLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~ 608 (643)
-||.+....--..|+.+. .++-+|+|-|+|+.+.. .|-|..+-
T Consensus 243 YLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 243 YLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred cchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 999998888777888765 58899999999999864 78887774
No 441
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.21 E-value=1.3e-10 Score=115.73 Aligned_cols=144 Identities=13% Similarity=0.179 Sum_probs=82.8
Q ss_pred eeCCCEEEEECCCCChHHHH-HHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHh-hcCCCC
Q 006489 422 LLSGSKIALVGPSGGGKSTI-ANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENI-AYGCDG 499 (643)
Q Consensus 422 i~~G~~vaivG~sGsGKSTL-l~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI-~~~~~~ 499 (643)
+++|+.+.|+|++||||||+ .+.+.++.++.+..+++.. +- -...+.++. .+|
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~--------------------e~--~~~~~~~~~~~~g--- 75 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST--------------------QL--TTTEFIKQMMSLG--- 75 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC--------------------CC--CHHHHHHHHHHhC---
Confidence 78999999999999999999 6888988765433333322 11 011112221 111
Q ss_pred CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc----CCCEEEEecccCCC----CHHH
Q 006489 500 KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM----NPRILLLDEATSAL----DAES 571 (643)
Q Consensus 500 ~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~----~p~IliLDE~TSaL----D~~t 571 (643)
.+.++ ....-.+ .++ .+ ...+|+++.++-.++|.+-. +|+++++||||+.+ |+..
T Consensus 76 -~~~~~---~~~~~~l-~~~---------~~---~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~ 138 (230)
T PRK08533 76 -YDINK---KLISGKL-LYI---------PV---YPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVA 138 (230)
T ss_pred -CchHH---HhhcCcE-EEE---------Ee---cccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHH
Confidence 11111 0000000 000 00 02356666666555554443 69999999999999 6666
Q ss_pred HHHHHHHHHHHcC-CCeEEEEccCchhHh---------hcCeEEEEe
Q 006489 572 EYLVQDAMDSLMK-GRTVLVIAHRLSTVQ---------SADTVAVVS 608 (643)
Q Consensus 572 e~~i~~~i~~~~~-~~TvI~VtHrl~~i~---------~aD~Iivl~ 608 (643)
.+.+.+.++.+.+ ++|+++ ||...... -||-|+.|+
T Consensus 139 ~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 139 VNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 6777787776643 665555 55544322 257888876
No 442
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.15 E-value=5.1e-12 Score=143.89 Aligned_cols=175 Identities=14% Similarity=0.125 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 242 LRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRY-----SEKVDETLKLGLQQAKVVGLFFGGLNAASTLSV 316 (643)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (643)
.++.............+.+.|.+.++.+||..+.|......| .+...+..+...+..........+...+.....
T Consensus 28 ~~~~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~ 107 (644)
T PRK10733 28 NGRKVDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWF 107 (644)
T ss_pred CcccCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHH
Confidence 344455555566677888999999999999999998877777 566666666555554444444444444555667
Q ss_pred HHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCC
Q 006489 317 IVVVIYGANLTITGSMTPG---ALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQ 393 (643)
Q Consensus 317 ~~~~~~g~~~v~~g~lt~g---~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~ 393 (643)
.+++++|+++++.|.++.| .+++|..+...+..| ..+...+..+.....+.+|+.++.+...+..
T Consensus 108 ~~il~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~----------- 175 (644)
T PRK10733 108 PMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPS----------- 175 (644)
T ss_pred HHHHHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH-----------
Confidence 7788899999999999998 778887777777777 6667777778777888888887776432100
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCC
Q 006489 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD 450 (643)
Q Consensus 394 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~ 450 (643)
..+++..++++| +.++||+|+||||+++++++...
T Consensus 176 --------------------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 176 --------------------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred --------------------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 001122245666 99999999999999999998764
No 443
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.14 E-value=4e-10 Score=130.42 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=60.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHH-HHHHc-CCCeEEEEccCchhHhhc-CeEEEEe
Q 006489 532 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDA-MDSLM-KGRTVLVIAHRLSTVQSA-DTVAVVS 608 (643)
Q Consensus 532 e~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~-i~~~~-~~~TvI~VtHrl~~i~~a-D~Iivl~ 608 (643)
.+-..||+|++|+..|+|++ .+|+++|||||++++|+.....+..+ +..+. .++++|++||..+....+ |+..+ .
T Consensus 386 ~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v-~ 463 (782)
T PRK00409 386 QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGV-E 463 (782)
T ss_pred hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe-E
Confidence 34467899999999999999 89999999999999999966666444 43332 478999999998887654 43333 3
Q ss_pred CCEEE
Q 006489 609 DGEIV 613 (643)
Q Consensus 609 ~G~Iv 613 (643)
++.+.
T Consensus 464 ~~~~~ 468 (782)
T PRK00409 464 NASVE 468 (782)
T ss_pred EEEEE
Confidence 55554
No 444
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.12 E-value=3.6e-11 Score=127.91 Aligned_cols=67 Identities=22% Similarity=0.210 Sum_probs=56.2
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCC-EEEECCEeCCCCCHHHHhcccEEEccCC
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG-KILLNGVPLVEISHEHLHRKISIVSQEP 482 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G-~I~idg~~i~~~~~~~lr~~i~~V~Q~~ 482 (643)
.+|++||+++++||.++|+||||||||||++ .|+.+|++| +|.+||.++...+..+++.-- +|.|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 5799999999999999999999999999999 677788888 799999999887755433222 777753
No 445
>PRK01156 chromosome segregation protein; Provisional
Probab=99.12 E-value=1.4e-10 Score=138.49 Aligned_cols=76 Identities=30% Similarity=0.400 Sum_probs=67.1
Q ss_pred CCCCCCHHHHHHHHH------HHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC---C-CeEEEEccCchhHhhcC
Q 006489 533 RGVRLSGGQKQRVAI------ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK---G-RTVLVIAHRLSTVQSAD 602 (643)
Q Consensus 533 ~G~~LSGGQrQRial------ARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~---~-~TvI~VtHrl~~i~~aD 602 (643)
....|||||+||++| ||+++++|++++|||||++||+.+...+.+.+..... + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 5999999999999999999999998888888864332 2 48999999999999999
Q ss_pred eEEEEe
Q 006489 603 TVAVVS 608 (643)
Q Consensus 603 ~Iivl~ 608 (643)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
No 446
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.09 E-value=6.1e-10 Score=107.47 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=89.1
Q ss_pred EEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHHH
Q 006489 428 IALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIE 507 (643)
Q Consensus 428 vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~ 507 (643)
+.|.|++|+|||||+.-++-....... .+.|++= +.+.+++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~-------------------~v~~~s~-------------------e~~~~~~~ 43 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGE-------------------PGLYVTL-------------------EESPEELI 43 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCC-------------------cEEEEEC-------------------CCCHHHHH
Confidence 679999999999998765433221111 2333321 22333444
Q ss_pred HHHHHcCchHHHHcC-CCcccccccCCCCCCCHHHHH-----HHHHHHH-HccCCCEEEEecccCCCC---HHHHHHHHH
Q 006489 508 NAAKMANAHDFISNF-PEKYQTFVGERGVRLSGGQKQ-----RVAIARA-LMMNPRILLLDEATSALD---AESEYLVQD 577 (643)
Q Consensus 508 ~al~~a~l~~~i~~l-p~G~~T~vge~G~~LSGGQrQ-----RialARA-l~~~p~IliLDE~TSaLD---~~te~~i~~ 577 (643)
+-++..+.+ +..+ ..|....+......+|+||+| +..+.++ .-.+|+++++||||+.+| ......+.+
T Consensus 44 ~~~~~~g~~--~~~l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~ 121 (187)
T cd01124 44 ENAESLGWD--LERLEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRR 121 (187)
T ss_pred HHHHHcCCC--hHHHHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHH
Confidence 444433332 1111 124444445556678999999 3444444 457899999999999999 666666666
Q ss_pred HHHHHc-CCCeEEEEccCchh---------H-hhcCeEEEEeC
Q 006489 578 AMDSLM-KGRTVLVIAHRLST---------V-QSADTVAVVSD 609 (643)
Q Consensus 578 ~i~~~~-~~~TvI~VtHrl~~---------i-~~aD~Iivl~~ 609 (643)
.++.+. .+.|+|+++|.... + ..||.|+.|+.
T Consensus 122 l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 122 LLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred HHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEEE
Confidence 665542 47899999998764 3 45899999973
No 447
>PRK03918 chromosome segregation protein; Provisional
Probab=99.07 E-value=2.5e-10 Score=136.53 Aligned_cols=75 Identities=33% Similarity=0.413 Sum_probs=67.0
Q ss_pred CCCCHHHHH------HHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhHhhcCeEEEE
Q 006489 535 VRLSGGQKQ------RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQSADTVAVV 607 (643)
Q Consensus 535 ~~LSGGQrQ------RialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~VtHrl~~i~~aD~Iivl 607 (643)
..|||||+| |+||||+++.+|+++||||||++||+.+...+.+.|..+.. +.|+|+|||+......||+|++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 579999999 56667789999999999999999999999999999887643 57999999999999999999999
Q ss_pred eC
Q 006489 608 SD 609 (643)
Q Consensus 608 ~~ 609 (643)
+.
T Consensus 867 ~~ 868 (880)
T PRK03918 867 SL 868 (880)
T ss_pred Ee
Confidence 73
No 448
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=99.07 E-value=7.1e-07 Score=86.48 Aligned_cols=213 Identities=14% Similarity=0.133 Sum_probs=148.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 63 ALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLF 142 (643)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (643)
..++.+++++.....+.+...+.-++.|++.+..||.+.+++. . ..+.+.++.++..+....+...-
T Consensus 3 ~I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~---------~----~~~~~~~~~l~~~~igaaRR~~D 69 (237)
T PF13748_consen 3 AIARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDV---------W----QALMYAALVLLMWAIGAARRIYD 69 (237)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH---------H----HHHHHHHHHHHHHHHhhhhHHHh
Confidence 4577889999999999999999999999999999999887641 1 12223333334444555666665
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006489 143 SSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTL 222 (643)
Q Consensus 143 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 222 (643)
.+.-.++..++-..++.+- ..+..+.+.+..|.+- ...+.||+-..++.++.+++++++++++++.++.++++
T Consensus 70 TRvf~rIy~~la~~vi~~q------r~~~~~~S~i~ARv~l-sRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~ 142 (237)
T PF13748_consen 70 TRVFSRIYAELAVPVILSQ------RQQGLSVSTIAARVAL-SREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGL 142 (237)
T ss_pred hHHHHHHHHHHhHHHHHHH------HHhCCChhHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544433 2455678899999875 66688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 223 LALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVG 302 (643)
Q Consensus 223 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (643)
.+++.+.++..+...+.++..+++.+.....++..+.+. ..-...++++.....+...+.+-..+
T Consensus 143 ~~l~~l~~~~~i~~~f~~~~~~L~~~LNnrlE~eV~~i~---------------~~~~~~l~rHy~~L~~lrI~lSD~EA 207 (237)
T PF13748_consen 143 ACLLILALFLLILPRFARRNYRLYRRLNNRLEKEVDIIE---------------RRKPASLRRHYRRLSRLRIRLSDREA 207 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHhh---------------cCChHHHHHHHHHHHhhhhhhchHHH
Confidence 999999999888888888877777766665544443322 11123344455555555555555555
Q ss_pred HHHHHHHH
Q 006489 303 LFFGGLNA 310 (643)
Q Consensus 303 ~~~~~~~~ 310 (643)
....+...
T Consensus 208 ~~y~~i~i 215 (237)
T PF13748_consen 208 LGYLLIGI 215 (237)
T ss_pred HHHHHHHH
Confidence 55544333
No 449
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.04 E-value=5.9e-10 Score=108.63 Aligned_cols=118 Identities=26% Similarity=0.375 Sum_probs=77.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCC-CCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHH
Q 006489 427 KIALVGPSGGGKSTIANLIERFYDPI-KGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSAD 505 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~~p~-~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~ 505 (643)
.+.|+||+||||||+++.|++.+++. .|.|..-..++. +.. ....+++.|.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~---~~~~~~i~q~------------------------ 54 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVH---ESKRSLINQR------------------------ 54 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-ccc---cCccceeeec------------------------
Confidence 57899999999999999999998754 567655443321 110 0011111111
Q ss_pred HHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCC
Q 006489 506 IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKG 585 (643)
Q Consensus 506 i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~ 585 (643)
.+|.+...++. ++++|+..+|+++++||+. |.++-..+.+ ....+
T Consensus 55 -----------------------~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~---~a~~G 99 (198)
T cd01131 55 -----------------------EVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALT---AAETG 99 (198)
T ss_pred -----------------------ccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH---HHHcC
Confidence 11111112221 4889999999999999996 6665444333 34468
Q ss_pred CeEEEEccCchhHhhcCeEEEE
Q 006489 586 RTVLVIAHRLSTVQSADTVAVV 607 (643)
Q Consensus 586 ~TvI~VtHrl~~i~~aD~Iivl 607 (643)
++++.++|..+.....||++.|
T Consensus 100 ~~v~~t~Ha~~~~~~~~Rl~~l 121 (198)
T cd01131 100 HLVMSTLHTNSAAKTIDRIIDV 121 (198)
T ss_pred CEEEEEecCCcHHHHHhHHHhh
Confidence 9999999999988888888766
No 450
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.04 E-value=3e-10 Score=140.15 Aligned_cols=75 Identities=27% Similarity=0.329 Sum_probs=68.9
Q ss_pred CCCCCCHHHHHHHHHHHHH----ccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHhhcCeEEEE
Q 006489 533 RGVRLSGGQKQRVAIARAL----MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV 607 (643)
Q Consensus 533 ~G~~LSGGQrQRialARAl----~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl 607 (643)
....||||||||++|||++ +++||++||||||++||+.+...+.+.|..+.++.|+|+|||++..+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 4468999999999999998 57889999999999999999999999998887788999999999999999999765
No 451
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.03 E-value=2.2e-09 Score=114.84 Aligned_cols=168 Identities=21% Similarity=0.186 Sum_probs=117.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 006489 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 475 (643)
Q Consensus 396 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 475 (643)
.++-++++-.|.. ...+++++ |++.+||+++|+|++|+|||||++.|+|..+|+.|.|.+.|..-
T Consensus 130 ~~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg------------ 194 (432)
T PRK06793 130 AFEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG------------ 194 (432)
T ss_pred chheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc------------
Confidence 3566677666653 23577774 99999999999999999999999999999999998887766322
Q ss_pred EEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHc---
Q 006489 476 SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM--- 552 (643)
Q Consensus 476 ~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~--- 552 (643)
-+++|.+. +.+...++. .|.+=-.-.+-|.|+|+|.+.+.+..
T Consensus 195 -----------~ev~e~~~-------------~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 195 -----------REVKDFIR-------------KELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred -----------ccHHHHHH-------------HHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 23333332 111111111 11122334667999999999999887
Q ss_pred ----cCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhhcCeEEEEeCCEEEEEcC
Q 006489 553 ----MNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 617 (643)
Q Consensus 553 ----~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~ 617 (643)
.++-++++||+|...|+. +.|-..+.+.. .+.|..+-+|-.+.+++|-+ .++|.|...++
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 678899999999999997 44444444433 46788888885556666655 36888876554
No 452
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.00 E-value=1e-09 Score=132.67 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=69.3
Q ss_pred CCCCCHHHHHHHHHHHHHcc----------CCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHh-hc
Q 006489 534 GVRLSGGQKQRVAIARALMM----------NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SA 601 (643)
Q Consensus 534 G~~LSGGQrQRialARAl~~----------~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~-~a 601 (643)
-.+||||+++|++||+||.. +|++|||||||++||+++...+.+.|..+. .++||++|||...... .+
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~ 1027 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIP 1027 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhC
Confidence 36899999999999999985 799999999999999999999999998764 5789999999999875 58
Q ss_pred CeEEEEeCC
Q 006489 602 DTVAVVSDG 610 (643)
Q Consensus 602 D~Iivl~~G 610 (643)
|+|.|++.|
T Consensus 1028 ~~i~v~~~~ 1036 (1042)
T TIGR00618 1028 HRILVKKTN 1036 (1042)
T ss_pred CEEEEEECC
Confidence 999999765
No 453
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.98 E-value=4e-09 Score=123.48 Aligned_cols=68 Identities=24% Similarity=0.318 Sum_probs=58.6
Q ss_pred HccCCCEEEEecccCCC-CHHHHHHHHHHHHHHc-CCCeEEEEccCchhH----------hhcCeEEEEeCCEEEEEcCh
Q 006489 551 LMMNPRILLLDEATSAL-DAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV----------QSADTVAVVSDGEIVESGTH 618 (643)
Q Consensus 551 l~~~p~IliLDE~TSaL-D~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i----------~~aD~Iivl~~G~Ive~G~~ 618 (643)
+..+|+++++|||+++| |+...+.+.+.++... .+.++|++||+++.+ ..||.+++|.+|++.+.|+.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 36799999999999999 6889999999987653 588999999999887 47999999999998776643
No 454
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.97 E-value=5e-09 Score=98.16 Aligned_cols=129 Identities=18% Similarity=0.154 Sum_probs=77.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHH
Q 006489 427 KIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADI 506 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i 506 (643)
.++|+|++|+||||+++.+++...+..|.|.+-. ++... ..++++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-------------------~e~~~--~~~~~~~~~~---------- 49 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD-------------------IEEEI--EELTERLIGE---------- 49 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE-------------------CCcch--HHHHHHHhhh----------
Confidence 3689999999999999999998877656555433 32210 0011111000
Q ss_pred HHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHH----------HHHHHH
Q 006489 507 ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE----------SEYLVQ 576 (643)
Q Consensus 507 ~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~----------te~~i~ 576 (643)
. ....+.. ...+......-+.++.++++.+++...+|+++|+||+++-++.. ..+.+.
T Consensus 50 -------~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~ 117 (165)
T cd01120 50 -------S----LKGALDN-LIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELR 117 (165)
T ss_pred -------h----hcccccc-EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHH
Confidence 0 0000111 11112222233455666889999999999999999999655543 334444
Q ss_pred HHHHHHc-CCCeEEEEccCchhH
Q 006489 577 DAMDSLM-KGRTVLVIAHRLSTV 598 (643)
Q Consensus 577 ~~i~~~~-~~~TvI~VtHrl~~i 598 (643)
+.+.... .+.|+|+++|.....
T Consensus 118 ~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 118 ELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHHhcCCceEEEEEecCCcc
Confidence 4443332 388999999988654
No 455
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.95 E-value=2.2e-09 Score=112.60 Aligned_cols=83 Identities=18% Similarity=0.260 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCccee-----------ceeEEeeCCCEEEEE
Q 006489 363 KAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLK-----------GITLKLLSGSKIALV 431 (643)
Q Consensus 363 ~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~-----------~isl~i~~G~~vaiv 431 (643)
+...+.+|+.++++.++.... ++....+.|+|+||+|.||+. .++|+ |+++.|.+||+++||
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~-----~~e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~Iv 174 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGD-----DPEKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGLIV 174 (415)
T ss_pred eccccHhHHHHHhCCCccCCC-----CccccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEEEE
Confidence 455678999999987654321 112345679999999999864 47897 999999999999999
Q ss_pred CCCCChHHHHHHHHHcCCCCC
Q 006489 432 GPSGGGKSTIANLIERFYDPI 452 (643)
Q Consensus 432 G~sGsGKSTLl~lL~g~~~p~ 452 (643)
||+|||||||++.|.+.+...
T Consensus 175 G~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 175 APPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCCChhHHHHHHHHhhccc
Confidence 999999999999999988643
No 456
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.94 E-value=3.8e-08 Score=89.10 Aligned_cols=117 Identities=35% Similarity=0.486 Sum_probs=84.3
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCC-CEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYDPIK-GKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKAS 502 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~p~~-G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~ 502 (643)
++..+.|+||+||||||+++.|+..+.... +.+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 468899999999999999999999987654 5666655332221111111
Q ss_pred HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHH-----
Q 006489 503 SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQD----- 577 (643)
Q Consensus 503 ~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~----- 577 (643)
.....+......+++.++..+++|-..+|+++++||+....+.........
T Consensus 51 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 ------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred ------------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 333344556778999999999999998999999999999999997665543
Q ss_pred --HHHHHcCCCeEEEEccC
Q 006489 578 --AMDSLMKGRTVLVIAHR 594 (643)
Q Consensus 578 --~i~~~~~~~TvI~VtHr 594 (643)
.......+..+|..+|.
T Consensus 107 ~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 107 LLLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHHhcCCCEEEEEeCC
Confidence 22333456778888884
No 457
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.94 E-value=1.4e-09 Score=106.68 Aligned_cols=80 Identities=30% Similarity=0.414 Sum_probs=66.2
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCC------------CCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHH
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYD------------PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIE 490 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~------------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTir 490 (643)
++|+.++|+||||||||||+++|.+.++ |..|+ ++|.|+..++.+.+++.+ .|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999986 78898 699999999988888854 688889999999
Q ss_pred HHhhcCCCCCCCHHHHHHHHHH
Q 006489 491 ENIAYGCDGKASSADIENAAKM 512 (643)
Q Consensus 491 eNI~~~~~~~~~~~~i~~al~~ 512 (643)
+|. ++. +.+.+.+++..
T Consensus 78 ~~~-y~~----~~~~i~~~l~~ 94 (205)
T PRK00300 78 GNY-YGT----PRSPVEEALAA 94 (205)
T ss_pred Ccc-ccC----cHHHHHHHHHc
Confidence 984 652 34556555544
No 458
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.94 E-value=1.6e-09 Score=133.65 Aligned_cols=86 Identities=19% Similarity=0.192 Sum_probs=74.2
Q ss_pred CcccccccCCC------CCCCHHHHHHHHHHHHHc----cCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEcc
Q 006489 524 EKYQTFVGERG------VRLSGGQKQRVAIARALM----MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAH 593 (643)
Q Consensus 524 ~G~~T~vge~G------~~LSGGQrQRialARAl~----~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtH 593 (643)
.|++..|...| ..||||||++++||+++. ++||++|||||+++||+.....+.+.|..+.++.++|+|||
T Consensus 1056 ~~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~ 1135 (1164)
T TIGR02169 1056 GGLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSL 1135 (1164)
T ss_pred CCeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 35555554333 479999999999999997 57899999999999999999999999998877889999999
Q ss_pred CchhHhhcCeEEEEeC
Q 006489 594 RLSTVQSADTVAVVSD 609 (643)
Q Consensus 594 rl~~i~~aD~Iivl~~ 609 (643)
+..++..||+++.+..
T Consensus 1136 ~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1136 RSPMIEYADRAIGVTM 1151 (1164)
T ss_pred cHHHHHhcceeEeEEE
Confidence 9999999999987753
No 459
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.89 E-value=7.5e-09 Score=101.88 Aligned_cols=139 Identities=20% Similarity=0.234 Sum_probs=82.9
Q ss_pred CCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-CCCEEEECCEeCCCCCHHHHhcccEEEccCCCCC-ccc
Q 006489 411 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF-NCS 488 (643)
Q Consensus 411 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf-~gT 488 (643)
+.++-+|++|++++|++++|.||+|+||||+++.+....-. ..|. .+-. + +.++.++ ..+| .-.
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~-~vpa---~-------~~~i~~~---~~i~~~~~ 81 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM-DVPA---K-------SMRLSLV---DRIFTRIG 81 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC-ccCc---c-------ccEeccc---cEEEEecC
Confidence 34788999999999999999999999999999988754211 1111 0000 0 0011111 1122 123
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCC
Q 006489 489 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALD 568 (643)
Q Consensus 489 ireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD 568 (643)
..||+..+.. .+ ..|+ +|++-.=....+|+++|||||.+++|
T Consensus 82 ~~d~~~~~~S-tF-~~e~------------------------------------~~~~~il~~~~~~sLvLlDE~~~Gt~ 123 (218)
T cd03286 82 ARDDIMKGES-TF-MVEL------------------------------------SETANILRHATPDSLVILDELGRGTS 123 (218)
T ss_pred cccccccCcc-hH-HHHH------------------------------------HHHHHHHHhCCCCeEEEEecccCCCC
Confidence 3344433311 11 1122 22211111125789999999999999
Q ss_pred HHHHHHHHHH-HHHHcC--CCeEEEEccCchhHhhc
Q 006489 569 AESEYLVQDA-MDSLMK--GRTVLVIAHRLSTVQSA 601 (643)
Q Consensus 569 ~~te~~i~~~-i~~~~~--~~TvI~VtHrl~~i~~a 601 (643)
+.....+..+ ++.+.+ ++++|++||..+.+...
T Consensus 124 ~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 124 THDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred chHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 9865555555 554444 79999999999887654
No 460
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.84 E-value=4.4e-08 Score=98.26 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=87.9
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCC
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGK 500 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~ 500 (643)
-+++|..+.|.|++|||||||+..++-......+ ++.|+..+-. ...+.+|..-. .
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~-------------------~~~y~~~e~~--~~~~~~~~~~~---g 76 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGK-------------------KVYVITTENT--SKSYLKQMESV---K 76 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCC-------------------EEEEEEcCCC--HHHHHHHHHHC---C
Confidence 5899999999999999999999988532212223 3444443221 11222332111 0
Q ss_pred CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHcc--CCCEEEEecccCCCC---HHHHHHH
Q 006489 501 ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM--NPRILLLDEATSALD---AESEYLV 575 (643)
Q Consensus 501 ~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~--~p~IliLDE~TSaLD---~~te~~i 575 (643)
.+.++. ... +...++..-| ++-...|.++++.+..++..+. +|+++++||||+.+| .+.-..+
T Consensus 77 ~~~~~~---~~~-g~l~i~~~~~--------~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~ 144 (234)
T PRK06067 77 IDISDF---FLW-GYLRIFPLNT--------EGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNF 144 (234)
T ss_pred CChhHH---HhC-CCceEEeccc--------cccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHH
Confidence 111110 000 0000111111 1123456788999999999997 999999999996554 3333344
Q ss_pred HHHHHHH-cCCCeEEEEccCchh--------HhhcCeEEEEeC
Q 006489 576 QDAMDSL-MKGRTVLVIAHRLST--------VQSADTVAVVSD 609 (643)
Q Consensus 576 ~~~i~~~-~~~~TvI~VtHrl~~--------i~~aD~Iivl~~ 609 (643)
.+.++.+ .+++|+++++|.... ..-+|-++.|+.
T Consensus 145 l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 145 LTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 3444432 357899999997653 223677777763
No 461
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.80 E-value=1.8e-08 Score=108.07 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=71.2
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEC---CEeCCCCCHHHH
Q 006489 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLN---GVPLVEISHEHL 471 (643)
Q Consensus 395 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~id---g~~i~~~~~~~l 471 (643)
+.++.++++..|... ..+++.++ +|.+||+++|+|+||||||||++.|.++.+|+.|.|.+. |.++.++..+.+
T Consensus 138 ~~~~r~~v~~~l~TG--i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 138 PAMTRARVETGLRTG--VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCeEeecceEEcCCC--cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 458999999999753 56888885 999999999999999999999999999999999999885 577766654433
Q ss_pred ----hcccEEEccCC
Q 006489 472 ----HRKISIVSQEP 482 (643)
Q Consensus 472 ----r~~i~~V~Q~~ 482 (643)
+++|++|+|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 35799999965
No 462
>PRK02224 chromosome segregation protein; Provisional
Probab=98.79 E-value=9.2e-09 Score=122.96 Aligned_cols=76 Identities=33% Similarity=0.450 Sum_probs=66.3
Q ss_pred CCCCHHHHH------HHHHHHHHccC------CCEEEEecccCCCCHHHHHHHHHHHHHHcC-C-CeEEEEccCchhHhh
Q 006489 535 VRLSGGQKQ------RVAIARALMMN------PRILLLDEATSALDAESEYLVQDAMDSLMK-G-RTVLVIAHRLSTVQS 600 (643)
Q Consensus 535 ~~LSGGQrQ------RialARAl~~~------p~IliLDE~TSaLD~~te~~i~~~i~~~~~-~-~TvI~VtHrl~~i~~ 600 (643)
..||||||| |+|+||++..+ ++++||||||++||+.....+.+.|..+.. + .++|+|||+...+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999864 267999999999999999999888877643 3 479999999999999
Q ss_pred cCeEEEEeCC
Q 006489 601 ADTVAVVSDG 610 (643)
Q Consensus 601 aD~Iivl~~G 610 (643)
||++++|+..
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999754
No 463
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.77 E-value=1.2e-08 Score=102.91 Aligned_cols=63 Identities=24% Similarity=0.357 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHHccCC---CEEEEecccCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhH
Q 006489 536 RLSGGQKQRVAIARALMMNP---RILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTV 598 (643)
Q Consensus 536 ~LSGGQrQRialARAl~~~p---~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~VtHrl~~i 598 (643)
.+|.|++|.+.|+-+++..+ .++++|||-++|.|...+.+.+.|....+ +.-+|+.||.+..+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 45999999999999998776 89999999999999988988899987765 78999999998765
No 464
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.75 E-value=1.7e-08 Score=121.40 Aligned_cols=75 Identities=33% Similarity=0.396 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHHHHcc--------CCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCe
Q 006489 534 GVRLSGGQKQRVAIARALMM--------NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADT 603 (643)
Q Consensus 534 G~~LSGGQrQRialARAl~~--------~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~ 603 (643)
-..|||||+||++|||||.. +|++|+|||||++||+.+...+.+.|..+. .|+||++|||-...... ..+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 46899999999999999995 899999999999999999999999998874 58999999996666554 344
Q ss_pred EEEEe
Q 006489 604 VAVVS 608 (643)
Q Consensus 604 Iivl~ 608 (643)
|.|-.
T Consensus 1027 i~V~k 1031 (1047)
T PRK10246 1027 IKVKK 1031 (1047)
T ss_pred EEEEE
Confidence 55544
No 465
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.69 E-value=1.6e-07 Score=87.16 Aligned_cols=84 Identities=18% Similarity=0.267 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh-cCeEEEEeCCEEE
Q 006489 536 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIV 613 (643)
Q Consensus 536 ~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~-aD~Iivl~~G~Iv 613 (643)
..|-|+-=-=-+.|.+ ++.-|+|||||-|+|-+.-+-.+...|+++. .|.-+|+.||.+=.+.. --.|+-++.+-|.
T Consensus 129 ~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~ 207 (233)
T COG3910 129 HMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGIE 207 (233)
T ss_pred hhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCcc
Confidence 3488887666666666 5679999999999999998888888888765 47789999999876532 2478888877654
Q ss_pred EEcChhHH
Q 006489 614 ESGTHEEL 621 (643)
Q Consensus 614 e~G~~~eL 621 (643)
.=+++|.
T Consensus 208 -~~~fe~t 214 (233)
T COG3910 208 -ERDFEET 214 (233)
T ss_pred -ccchHHH
Confidence 3455553
No 466
>PRK01889 GTPase RsgA; Reviewed
Probab=98.69 E-value=1.4e-08 Score=107.83 Aligned_cols=134 Identities=19% Similarity=0.169 Sum_probs=93.5
Q ss_pred eeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhh
Q 006489 415 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIA 494 (643)
Q Consensus 415 L~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~ 494 (643)
++.+.-.+++|++++++|+||+|||||++.|+|...+..|+|.+++...... ..++++.+++|+.++|+.+-..|+.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~t---t~~~~l~~l~~~~~l~DtpG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHT---TTHRELHPLPSGGLLIDTPGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcch---hhhccEEEecCCCeecCCCchhhhc
Confidence 5566667889999999999999999999999999999999999987544332 3466899999999999988888888
Q ss_pred cCCCCC-C--CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccC
Q 006489 495 YGCDGK-A--SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 554 (643)
Q Consensus 495 ~~~~~~-~--~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~ 554 (643)
+..+.. . .-.++.+.++.|..++....-..|-...-.-.-.+|| ++|..--+.|+++
T Consensus 262 l~~~~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~~~~~i~---~~r~~~Y~~l~~e 321 (356)
T PRK01889 262 LWDAEDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAIENGELD---ERRLQSYRKLQRE 321 (356)
T ss_pred ccCchhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHHHcCCCC---HHHHHHHHHHHHH
Confidence 874311 1 1135667777776654333322231111111112344 7788777777654
No 467
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.68 E-value=1.7e-07 Score=98.64 Aligned_cols=171 Identities=26% Similarity=0.331 Sum_probs=118.3
Q ss_pred EEEECCCCCCCcceeceeEEeeCCCEEEEECCCCChHHHHHHHH-HcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEcc
Q 006489 402 VWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLI-ERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQ 480 (643)
Q Consensus 402 vsf~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL-~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q 480 (643)
|+|.-|.+ -.+++ +-||+| .+.|||..=-|||||+++| .|-|+-.-| ||.+ -+|.-
T Consensus 227 ve~~LP~~---g~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE-------------~VVT~ 283 (448)
T PF09818_consen 227 VEIELPNG---GTVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGRE-------------FVVTD 283 (448)
T ss_pred EEEECCCC---CEEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCce-------------EEEEC
Confidence 66666643 23444 568999 9999999999999999999 678876555 5521 11111
Q ss_pred CCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 006489 481 EPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLL 560 (643)
Q Consensus 481 ~~~Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliL 560 (643)
... ... .+.| -+..+.+.+..||.+||.|.||.-- --.|=||---|=-.|..||-..+++||+
T Consensus 284 ~~a---------vki----rAED---GR~V~~vDISpFI~~LP~g~dT~~F-sT~~ASGSTSqAAnI~EAlE~Ga~~LLi 346 (448)
T PF09818_consen 284 PDA---------VKI----RAED---GRSVEGVDISPFINNLPGGKDTTCF-STENASGSTSQAANIMEALEAGARLLLI 346 (448)
T ss_pred CCc---------eEE----EecC---CceEeCccchHHHhhCCCCCCCCcc-cccCCCchHHHHHHHHHHHHcCCCEEEE
Confidence 000 000 0111 2456677888999999999998832 2335599999999999999999999999
Q ss_pred ecccCCC-----CHHHHHHH-------------HHHHHHHcCCCeEEEEccCchhHhhcCeEEEEeCCEE
Q 006489 561 DEATSAL-----DAESEYLV-------------QDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEI 612 (643)
Q Consensus 561 DE~TSaL-----D~~te~~i-------------~~~i~~~~~~~TvI~VtHrl~~i~~aD~Iivl~~G~I 612 (643)
||=|||- |..-++.| ...+.+...-.|++++.--=.++.-||+|++||+=+.
T Consensus 347 DEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 347 DEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred cCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccc
Confidence 9999997 66656666 2223233333456666566668899999999998654
No 468
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.65 E-value=4.8e-08 Score=98.26 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=35.8
Q ss_pred HHccCCCEEEEecccCC------CCHHHHHHHHHHHHHHc--CCCeEEEEccCc
Q 006489 550 ALMMNPRILLLDEATSA------LDAESEYLVQDAMDSLM--KGRTVLVIAHRL 595 (643)
Q Consensus 550 Al~~~p~IliLDE~TSa------LD~~te~~i~~~i~~~~--~~~TvI~VtHrl 595 (643)
+..++|+++|+| |+++ +|+.....+.+.+.++. .++|+|+++|..
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 345799999999 7764 68887777888887654 389999999976
No 469
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.63 E-value=7.9e-08 Score=101.77 Aligned_cols=122 Identities=25% Similarity=0.312 Sum_probs=78.8
Q ss_pred eeCCCEEEEECCCCChHHHHHHHHHcCCCC-CCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCC
Q 006489 422 LLSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGK 500 (643)
Q Consensus 422 i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~ 500 (643)
.+++..+.|+||+||||||+++.|++.+++ .+|.|..-..++.-. .....+.+.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~--------------------- 173 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLIN--------------------- 173 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEE---------------------
Confidence 357899999999999999999999997764 467665533221100 000000000
Q ss_pred CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHH
Q 006489 501 ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMD 580 (643)
Q Consensus 501 ~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~ 580 (643)
...+|..+.+ -.=++++||-.+||++++||+. |+++.....++
T Consensus 174 --------------------------q~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a-- 216 (343)
T TIGR01420 174 --------------------------QREVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTA-- 216 (343)
T ss_pred --------------------------ccccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH--
Confidence 0112221111 1234788999999999999997 88877654444
Q ss_pred HHcCCCeEEEEccCchhHhhcCeEEE
Q 006489 581 SLMKGRTVLVIAHRLSTVQSADTVAV 606 (643)
Q Consensus 581 ~~~~~~TvI~VtHrl~~i~~aD~Iiv 606 (643)
...|.+++...|..+.....||++-
T Consensus 217 -a~tGh~v~~T~Ha~~~~~~~~Rl~~ 241 (343)
T TIGR01420 217 -AETGHLVFGTLHTNSAAQTIERIID 241 (343)
T ss_pred -HHcCCcEEEEEcCCCHHHHHHHHHH
Confidence 3458999999999877766666543
No 470
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.60 E-value=8.7e-07 Score=104.51 Aligned_cols=54 Identities=28% Similarity=0.338 Sum_probs=47.6
Q ss_pred HHHHHccCCCEEEEecccCCC-CHHHHHHHHHHHHHHc-CCCeEEEEccCchhHhh
Q 006489 547 IARALMMNPRILLLDEATSAL-DAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS 600 (643)
Q Consensus 547 lARAl~~~p~IliLDE~TSaL-D~~te~~i~~~i~~~~-~~~TvI~VtHrl~~i~~ 600 (643)
|+|++..+|+++++|||++.| |+...+.+.+.++... .+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 789999999999999999999 6889999999887653 58899999999998764
No 471
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.58 E-value=8.6e-08 Score=92.51 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=58.4
Q ss_pred ceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCC--CC-cccHH
Q 006489 414 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPV--LF-NCSIE 490 (643)
Q Consensus 414 vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~--Lf-~gTir 490 (643)
..+=+.+.+++|+.++|+|++||||||++++|+++++|.+|.|.+.+.+-...+ .+..+.++.|.+. .+ .-|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 455567789999999999999999999999999999999999999774332221 2345666665543 22 34677
Q ss_pred HHhhc
Q 006489 491 ENIAY 495 (643)
Q Consensus 491 eNI~~ 495 (643)
+++..
T Consensus 91 ~~l~~ 95 (186)
T cd01130 91 DLLRS 95 (186)
T ss_pred HHHHH
Confidence 77643
No 472
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.56 E-value=7.8e-08 Score=102.34 Aligned_cols=63 Identities=35% Similarity=0.421 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHHHHcc---------CCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhHh
Q 006489 535 VRLSGGQKQRVAIARALMM---------NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ 599 (643)
Q Consensus 535 ~~LSGGQrQRialARAl~~---------~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~~i~ 599 (643)
..+|.||+++++||.+|.. +|||+|||||+|.||+.....+.+.|... +.+++++||.+..++
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4689999999999999999 99999999999999999999999998753 679999999987654
No 473
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.55 E-value=5.3e-08 Score=104.39 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=66.2
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCC---CEEEECCEeCCCCCHHHH------hcccEEEccCC
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK---GKILLNGVPLVEISHEHL------HRKISIVSQEP 482 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~---G~I~idg~~i~~~~~~~l------r~~i~~V~Q~~ 482 (643)
..+++++ |++.+||+++|+|+||+|||||+++|+|+++|+. |.|-.+|.+++++..+.+ |..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 3579999 9999999999999999999999999999999876 444455666666554544 55799999998
Q ss_pred CCC-cccHHHHhhc
Q 006489 483 VLF-NCSIEENIAY 495 (643)
Q Consensus 483 ~Lf-~gTireNI~~ 495 (643)
..+ .-++.+|+..
T Consensus 222 s~~~rl~a~e~a~~ 235 (434)
T PRK07196 222 SPLMRIKATELCHA 235 (434)
T ss_pred ChhhhHHHHHHHHH
Confidence 776 4577777754
No 474
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.52 E-value=5.9e-08 Score=105.46 Aligned_cols=145 Identities=17% Similarity=0.216 Sum_probs=85.4
Q ss_pred eEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCC
Q 006489 419 TLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCD 498 (643)
Q Consensus 419 sl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~ 498 (643)
++.+++|+.+++|||+|+||||++..|++.+.+..|.. +|++|++|+ |.-+..||+.++..
T Consensus 250 ~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr~~Ae 310 (484)
T PRK06995 250 DALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLRIYGK 310 (484)
T ss_pred cccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHHHHHH
Confidence 34456789999999999999999999999887666642 688999998 67778999976421
Q ss_pred -CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCC-----CEEEEecccCCCC
Q 006489 499 -GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP-----RILLLDEATSALD 568 (643)
Q Consensus 499 -~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p-----~IliLDE~TSaLD 568 (643)
...+ .+...... .+..+.+.....|..-|.+-. ...+.-+.++++++ .+|+||..|..-|
T Consensus 311 ilGVpv~~~~~~~Dl~~-------aL~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~ 380 (484)
T PRK06995 311 ILGVPVHAVKDAADLRL-------ALSELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT 380 (484)
T ss_pred HhCCCeeccCCchhHHH-------HHHhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH
Confidence 0011 11111111 233444444555555443211 11223333344443 6899998887733
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEccCchh
Q 006489 569 AESEYLVQDAMDSLMKGRTVLVIAHRLST 597 (643)
Q Consensus 569 ~~te~~i~~~i~~~~~~~TvI~VtHrl~~ 597 (643)
... +.+.... .+.+-+++|+=-++
T Consensus 381 l~~---i~~~f~~--~~~~g~IlTKlDet 404 (484)
T PRK06995 381 LNE---VVQAYRG--PGLAGCILTKLDEA 404 (484)
T ss_pred HHH---HHHHhcc--CCCCEEEEeCCCCc
Confidence 321 1122222 35677778875443
No 475
>PRK08149 ATP synthase SpaL; Validated
Probab=98.50 E-value=1.9e-07 Score=100.01 Aligned_cols=99 Identities=15% Similarity=0.226 Sum_probs=74.3
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCC---CEEEECCEeCCCCCHHHHh----cccEEEccCCCC
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK---GKILLNGVPLVEISHEHLH----RKISIVSQEPVL 484 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~---G~I~idg~~i~~~~~~~lr----~~i~~V~Q~~~L 484 (643)
..+++++ +++.+||+++|+|+||+|||||++.|.+..+++. |.|-.+|.++.++..+.++ +++++|....
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s-- 215 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS-- 215 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC--
Confidence 3579999 9999999999999999999999999999999887 9999999999888766665 5677775543
Q ss_pred CcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCccccc
Q 006489 485 FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTF 529 (643)
Q Consensus 485 f~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ 529 (643)
.+..-+++..+.-.+.+.|+... +|.|..
T Consensus 216 --------------d~p~~~r~~a~~~a~tiAE~fr~--~G~~Vl 244 (428)
T PRK08149 216 --------------DFSSVDRCNAALVATTVAEYFRD--QGKRVV 244 (428)
T ss_pred --------------CCCHHHHHhHHHHHHHHHHHHHH--cCCCEE
Confidence 12334455555555555565553 254433
No 476
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.49 E-value=1.9e-07 Score=90.94 Aligned_cols=106 Identities=18% Similarity=0.241 Sum_probs=71.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcCCCCCCCHHHH
Q 006489 427 KIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADI 506 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~~~~~~~~~~i 506 (643)
+++|+|++|||||||++.+.+.+++..| +.+-..|........+....++++|+..+. +..|-+.. ...+.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~-----~~~~~ 73 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILG---VETGGCPH-----TAIRE 73 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceeh---hhcCCCcc-----ceecc
Confidence 6899999999999999999999887655 555556776666666777789999987652 11111111 11112
Q ss_pred HHHHHHcCchHHHHcCCCcccccccCCCCCCCHHH
Q 006489 507 ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 541 (643)
Q Consensus 507 ~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 541 (643)
..+...+.+.+++..+|.++.+.|+-.|..+|.--
T Consensus 74 ~~~~~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 74 DASMNLEAVAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence 22234555566777778777788888887666554
No 477
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=98.47 E-value=0.0019 Score=65.64 Aligned_cols=240 Identities=17% Similarity=0.090 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006489 121 ILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEAL 200 (643)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~ 200 (643)
+..++.+++...++..+..++......|.+..|...++++=-++ ++.----+|+..|+-+....+-.....++
T Consensus 59 ~~~f~~ia~~~v~~~v~~~ff~shyiFrWR~Am~~yY~~~W~~~-------r~IEGASQRIQEDtmrfa~i~E~Lgv~~i 131 (315)
T PF05992_consen 59 ILNFLWIAMIYVVLAVLNSFFVSHYIFRWRTAMNEYYMSHWPKL-------RHIEGASQRIQEDTMRFAKIMEDLGVSFI 131 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-------ccCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444445555555555666666666665554333 23323468999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHH-----------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchH
Q 006489 201 RNLSTAFIGLGFMFATSWKLT-----------L--LALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAI 267 (643)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~l~-----------l--~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi 267 (643)
.++.+.+..+-+++..+.... | ++++...+-.++....+.++-.+..+.++..+...+.+. -|=
T Consensus 132 ~simtliaFlPiL~~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRKeLV---~gE 208 (315)
T PF05992_consen 132 RSIMTLIAFLPILWELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRKELV---YGE 208 (315)
T ss_pred HHHHHHHHHHHHHHHHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHHHHH---hcC
Confidence 888888888777776553332 1 222222223333444556665555555555555554331 111
Q ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 006489 268 RTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTV 347 (643)
Q Consensus 268 ~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~ 347 (643)
.. .-....+...+.|.+.++++.+.............. -..+..+....+-+..+..|.+|.|.+......+..+
T Consensus 209 D~-~~ra~~~tl~eLF~~Vr~Ny~rly~hy~yfni~~~~----y~q~~~i~~~i~l~Psi~ag~iTLG~~~Qi~~aF~~V 283 (315)
T PF05992_consen 209 DD-ANRAQPPTLRELFSNVRRNYFRLYFHYMYFNIARIS----YLQFDVIFPYIILIPSIVAGAITLGVLQQISNAFGQV 283 (315)
T ss_pred cc-cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11 222334445566666666665555444444333332 2233333344445677789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006489 348 GSSVSGLSSLYTVAMKAAGASRRVFQLL 375 (643)
Q Consensus 348 ~~~l~~l~~~~~~~~~~~~~~~ri~~~l 375 (643)
..+++.+...++.+.+.....+|+.++-
T Consensus 284 ~~sfq~lv~~W~tivEL~Si~kRL~~FE 311 (315)
T PF05992_consen 284 RSSFQYLVNSWTTIVELRSIYKRLRAFE 311 (315)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998874
No 478
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.47 E-value=2e-07 Score=98.62 Aligned_cols=89 Identities=22% Similarity=0.282 Sum_probs=66.4
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCCC--CC-CEEEECCEeCCCCCHHHHhcccEEEccCCC-----CCcccHHHHhh
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYDP--IK-GKILLNGVPLVEISHEHLHRKISIVSQEPV-----LFNCSIEENIA 494 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~p--~~-G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~-----Lf~gTireNI~ 494 (643)
++|..|+|+||+||||||++++|++++.+ .+ +.|.....|+ ++..+.+++..++++|... -|..+|+++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48999999999999999999999999843 23 4665555444 5777777777888988643 58899999988
Q ss_pred cCCCC-----CC-CHHHHHHHHHHc
Q 006489 495 YGCDG-----KA-SSADIENAAKMA 513 (643)
Q Consensus 495 ~~~~~-----~~-~~~~i~~al~~a 513 (643)
.. |. +. +.+.+..|++++
T Consensus 211 ~~-Pd~i~vGEiRd~et~~~al~aa 234 (358)
T TIGR02524 211 RK-PHAILVGEARDAETISAALEAA 234 (358)
T ss_pred cC-CCEEeeeeeCCHHHHHHHHHHH
Confidence 64 31 12 445566788774
No 479
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.47 E-value=1.1e-06 Score=95.20 Aligned_cols=176 Identities=22% Similarity=0.259 Sum_probs=112.8
Q ss_pred CcceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH---HH-----HhcccEEEccCCC
Q 006489 412 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH---EH-----LHRKISIVSQEPV 483 (643)
Q Consensus 412 ~~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~---~~-----lr~~i~~V~Q~~~ 483 (643)
..+++++ +++.+||+++|+|+||+|||||++.|.+..+|+.|.+...|..-+++.. +. +++.+.++.+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~--- 226 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT--- 226 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC---
Confidence 4689999 9999999999999999999999999999999998887776655444321 11 1111222211
Q ss_pred CCcccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCccccccc-CCCCCCCHHHHHHHHHHHHHccCCCEEEEec
Q 006489 484 LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVG-ERGVRLSGGQKQRVAIARALMMNPRILLLDE 562 (643)
Q Consensus 484 Lf~gTireNI~~~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vg-e~G~~LSGGQrQRialARAl~~~p~IliLDE 562 (643)
..+..-+++..+.-.+.+.++... +|.|-.+= +.=.+ .|+|+= += =+.+.|
T Consensus 227 --------------~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr----------~A~A~R-Ei-sl~~ge 278 (440)
T TIGR01026 227 --------------SDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTR----------FAMAQR-EI-GLAAGE 278 (440)
T ss_pred --------------CCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHH----------HHHHHH-HH-HHhcCC
Confidence 112334556555555556666653 46665442 21111 122210 00 012345
Q ss_pred c--cCCCCHHHHHHHHHHHHHHc-CCC-------eEEEEccCchhHhhcCeEEEEeCCEEEEEcChhH
Q 006489 563 A--TSALDAESEYLVQDAMDSLM-KGR-------TVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEE 620 (643)
Q Consensus 563 ~--TSaLD~~te~~i~~~i~~~~-~~~-------TvI~VtHrl~~i~~aD~Iivl~~G~Ive~G~~~e 620 (643)
| +.+.|+..-..+.+-+.+.. .++ ||++-+|++ +=+-+|.+.-+.+|+|+-.++-.+
T Consensus 279 ~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~-~dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 279 PPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM-NEPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred CCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC-CcchhhhhccccceEEEEecchhh
Confidence 4 55789998888877776654 346 788889988 445689999999999998766433
No 480
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.45 E-value=1.3e-07 Score=92.27 Aligned_cols=109 Identities=19% Similarity=0.178 Sum_probs=64.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHH-----hhcCCCCCC
Q 006489 427 KIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEEN-----IAYGCDGKA 501 (643)
Q Consensus 427 ~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireN-----I~~~~~~~~ 501 (643)
.++|+|+||||||||++.|.+++ ..|.+ .++++|.+...-+.+++ ..+..+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~-------------------~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKV-------------------VIISQDSYYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCe-------------------EEEEecccccccccccHHHhccCCCCCCCcc
Confidence 47999999999999999999987 23333 33444443322222221 122222223
Q ss_pred CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHH
Q 006489 502 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 570 (643)
Q Consensus 502 ~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~ 570 (643)
+.+.+.+.+......+. +.-...++|.|++++-.+ .+++++++|+|.|++..++.
T Consensus 60 ~~~~~~~~l~~l~~~~~-----------~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 60 DFDLLISHLQDLKNGKS-----------VEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred cHHHHHHHHHHHHCCCC-----------EeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 44444444443322211 112234667777765544 56889999999999998863
No 481
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.45 E-value=4.7e-08 Score=108.30 Aligned_cols=156 Identities=14% Similarity=0.123 Sum_probs=92.3
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHH--cCCCCCCCEEEECCEeCCCCCHHHHhc---ccEEEccCCCCCcccHHHHhhc
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIE--RFYDPIKGKILLNGVPLVEISHEHLHR---KISIVSQEPVLFNCSIEENIAY 495 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~--g~~~p~~G~I~idg~~i~~~~~~~lr~---~i~~V~Q~~~Lf~gTireNI~~ 495 (643)
-+++|..+.|.|++|||||||+.-.+ |.-+..+..+++... -+++++++ ++++-.|+..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 48899999999999999999999763 444334566666552 23344433 33433332210 011222
Q ss_pred CCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHH--HHHccCCCEEEEecccCCCCHHHHH
Q 006489 496 GCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA--RALMMNPRILLLDEATSALDAESEY 573 (643)
Q Consensus 496 ~~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialA--RAl~~~p~IliLDE~TSaLD~~te~ 573 (643)
-.. .........++..++++++..++ ..+|+||+||+.|+ .++..+|+.+ ....+
T Consensus 88 ~~~--~~~~~~~~~~~~~~l~~~l~~i~-----------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~ 144 (484)
T TIGR02655 88 LDA--SPDPEGQDVVGGFDLSALIERIN-----------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRR 144 (484)
T ss_pred Eec--CchhccccccccCCHHHHHHHHH-----------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHH
Confidence 111 11111112233344444444333 56799999999999 6776665443 34556
Q ss_pred HHHHHHHHHc-CCCeEEEEccCchhH---------h-hcCeEEEEe
Q 006489 574 LVQDAMDSLM-KGRTVLVIAHRLSTV---------Q-SADTVAVVS 608 (643)
Q Consensus 574 ~i~~~i~~~~-~~~TvI~VtHrl~~i---------~-~aD~Iivl~ 608 (643)
.+.+.++.+. .++|+|+++|..+.. . -||-|+.|+
T Consensus 145 ~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 145 EIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 6666665543 489999999987531 1 379999886
No 482
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.33 E-value=6.1e-07 Score=86.58 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=48.1
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEP 482 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~ 482 (643)
.|+.++|+||||||||||+++|.+.+.| .+.+++..+........++.+++++|+.
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 3789999999999999999999998765 5888888887766666778899999884
No 483
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.30 E-value=5.7e-07 Score=88.40 Aligned_cols=29 Identities=34% Similarity=0.401 Sum_probs=27.0
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYDP 451 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~p 451 (643)
++|+.++|+|+||||||||++.|.+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 68999999999999999999999999764
No 484
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.27 E-value=2.7e-05 Score=91.87 Aligned_cols=189 Identities=15% Similarity=0.219 Sum_probs=106.0
Q ss_pred ceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc--EEE---ccCCCCC-----c
Q 006489 417 GITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI--SIV---SQEPVLF-----N 486 (643)
Q Consensus 417 ~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i--~~V---~Q~~~Lf-----~ 486 (643)
.+|+.+.++..++|+|+||||||||++.|++.+....+.|.+-+.+-. .+.+-+.+ .|+ +-.+.=| .
T Consensus 438 ~~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D~~~~---~~~~~~a~gG~y~~i~~~~~~~~NPf~l~ 514 (800)
T PRK13898 438 YFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDKDRG---AEIFIRALNGVYTVIEPRLKCNFNPLQLD 514 (800)
T ss_pred EEEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeCCCcC---HHHHHHhcCCEEEEecCCCCcccCCCCCC
Confidence 457788888999999999999999999999988888888877664432 11111111 111 1122212 1
Q ss_pred ccHHHHhhc---------C-CCCCCCHH---HHHHHHHHc--------CchHHHHcCC----------------Ccc---
Q 006489 487 CSIEENIAY---------G-CDGKASSA---DIENAAKMA--------NAHDFISNFP----------------EKY--- 526 (643)
Q Consensus 487 gTireNI~~---------~-~~~~~~~~---~i~~al~~a--------~l~~~i~~lp----------------~G~--- 526 (643)
+|- +|+.+ . .....+++ .+.+|++.+ .+.++.+.++ +|-
T Consensus 515 ~~~-~~~~~l~~~l~~l~~~~~~~lt~~~~~~I~~av~~~~~~~~~~rtl~~l~~~l~~~~~~~L~~~L~~~~~~G~~g~ 593 (800)
T PRK13898 515 DTS-ENRTFLMEWLKVLVTSNGESLTAQDIKRINDAVEGNFKLKKEDRRLSNLVAFLGIDGPNTLAGRIAMWHGKGSHAA 593 (800)
T ss_pred CCh-HHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhCChhhCcHHHHHHHhCcCCchHHHHHHHHHhcCCCcEE
Confidence 232 23211 0 01123332 244454432 1223333222 111
Q ss_pred --c---cccc--C-C--CCCC----CHHHHHHHH-------HHHHHccCCCEEEEecccCCCC-HHHHHHHHHHHHHHc-
Q 006489 527 --Q---TFVG--E-R--GVRL----SGGQKQRVA-------IARALMMNPRILLLDEATSALD-AESEYLVQDAMDSLM- 583 (643)
Q Consensus 527 --~---T~vg--e-~--G~~L----SGGQrQRia-------lARAl~~~p~IliLDE~TSaLD-~~te~~i~~~i~~~~- 583 (643)
| +.+. + + |.++ .-.+...+. |.+.+-.+|.++++|||...|| +...+.+.+.++...
T Consensus 594 ~Fd~~~d~l~~~~~~~~~fdl~~l~~~~~~~~~vl~yl~~ri~~~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK 673 (800)
T PRK13898 594 IFDNEEDLLDFQKARVFGFEMGELLKDPVSLAPVLLYLFHRISISLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK 673 (800)
T ss_pred eecCCccccCCCCCcEEEEEchhhcCChhhHHHHHHHHHHHHHHHhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH
Confidence 0 1111 0 0 1111 112222122 1234557899999999999999 778888888887653
Q ss_pred CCCeEEEEccCchh----------HhhcCeEEEEeC
Q 006489 584 KGRTVLVIAHRLST----------VQSADTVAVVSD 609 (643)
Q Consensus 584 ~~~TvI~VtHrl~~----------i~~aD~Iivl~~ 609 (643)
.+..++++||.++. +++|+.-+.|-|
T Consensus 674 ~~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 674 LNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPN 709 (800)
T ss_pred cCCEEEEEeCCHHHHHhChhHHHHHHhCCeEEEcCC
Confidence 47899999999876 445676666654
No 485
>PLN02796 D-glycerate 3-kinase
Probab=98.24 E-value=4.5e-07 Score=94.01 Aligned_cols=61 Identities=15% Similarity=0.297 Sum_probs=52.6
Q ss_pred cceeceeEEe---eCCCE-----EEEECCCCChHHHHHHHHHcCCCCC---CCEEEECCEeCCCCCHHHHhc
Q 006489 413 MVLKGITLKL---LSGSK-----IALVGPSGGGKSTIANLIERFYDPI---KGKILLNGVPLVEISHEHLHR 473 (643)
Q Consensus 413 ~vL~~isl~i---~~G~~-----vaivG~sGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~~~~~lr~ 473 (643)
.+++++++.+ ++|+. ++|+|++|||||||++.|.+++.+. .|.|.+||..+...+...+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 5788999887 67887 9999999999999999999999874 688999999887766666665
No 486
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.24 E-value=1.4e-06 Score=86.94 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=31.3
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHH-cCCCCCCCEEEECC
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIE-RFYDPIKGKILLNG 460 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~-g~~~p~~G~I~idg 460 (643)
-+++|+.+.|.|++|||||||+..++ ....+.++.+++..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 58899999999999999999998654 23345556677765
No 487
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.24 E-value=1.1e-06 Score=83.79 Aligned_cols=53 Identities=25% Similarity=0.436 Sum_probs=40.2
Q ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhc-ccEEEccCC
Q 006489 424 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR-KISIVSQEP 482 (643)
Q Consensus 424 ~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~-~i~~V~Q~~ 482 (643)
+|+.++|+|+||||||||+++|.+++.+ +.+||.++... ..+|+ ..++.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~ 55 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDE 55 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcc
Confidence 6999999999999999999999999877 68899877432 23332 345555553
No 488
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.23 E-value=7.5e-07 Score=85.38 Aligned_cols=78 Identities=28% Similarity=0.399 Sum_probs=54.3
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC------------CCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHH
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFYDP------------IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEEN 492 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~~p------------~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireN 492 (643)
|++++|+||||||||||++.|.+.++. ..|+ .+|.+..-++.+.+.+.+ +++.++...++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 789999999999999999999998743 3333 355555555555665553 56777777777777
Q ss_pred hhcCCCCCCCHHHHHHHHHH
Q 006489 493 IAYGCDGKASSADIENAAKM 512 (643)
Q Consensus 493 I~~~~~~~~~~~~i~~al~~ 512 (643)
. ++ .+.+.++++++.
T Consensus 76 ~-y~----~~~~~i~~~~~~ 90 (180)
T TIGR03263 76 Y-YG----TPKSPVEEALAA 90 (180)
T ss_pred e-eC----CcHHHHHHHHHC
Confidence 4 55 335556666654
No 489
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.22 E-value=3.1e-06 Score=103.71 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=36.1
Q ss_pred eeEEeeCCCEEEEECCCCChHHHHHHHHHcCC-CCCCCEEEECC
Q 006489 418 ITLKLLSGSKIALVGPSGGGKSTIANLIERFY-DPIKGKILLNG 460 (643)
Q Consensus 418 isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~-~p~~G~I~idg 460 (643)
+++..+.++.++|+|++|+|||||++.+.+.. ...+|.+.+++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 46677889999999999999999999995444 55689999876
No 490
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.21 E-value=1.1e-05 Score=73.34 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=40.1
Q ss_pred HHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHHHHHHHHc------CCCeEEEEccCch
Q 006489 542 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM------KGRTVLVIAHRLS 596 (643)
Q Consensus 542 rQRialARAl~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~------~~~TvI~VtHrl~ 596 (643)
++.....++...++.++++||+-.. +......+.+.+.... +++++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5667777788889999999998765 5556666777776653 4678888888654
No 491
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.21 E-value=2e-06 Score=106.00 Aligned_cols=62 Identities=26% Similarity=0.317 Sum_probs=55.3
Q ss_pred CCCCCCHHHHHHHH----HHHH--------HccCCCEEEEecccCCCCHHHHHHHHHHHHHHcCCCeEEEEccCch
Q 006489 533 RGVRLSGGQKQRVA----IARA--------LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 596 (643)
Q Consensus 533 ~G~~LSGGQrQRia----lARA--------l~~~p~IliLDE~TSaLD~~te~~i~~~i~~~~~~~TvI~VtHrl~ 596 (643)
+...||||||||++ +|+| +..+|++++|||||++||+.+...+.+.+.++ +.++|++||++.
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREW 1317 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchh
Confidence 35789999999996 5766 55799999999999999999999999999887 899999999984
No 492
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.21 E-value=3.1e-06 Score=101.15 Aligned_cols=77 Identities=26% Similarity=0.376 Sum_probs=66.5
Q ss_pred CCCCCHHHHHHHH------HHHHHccC--CCEEEEecccCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhHhhcCeE
Q 006489 534 GVRLSGGQKQRVA------IARALMMN--PRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQSADTV 604 (643)
Q Consensus 534 G~~LSGGQrQRia------lARAl~~~--p~IliLDE~TSaLD~~te~~i~~~i~~~~~-~~TvI~VtHrl~~i~~aD~I 604 (643)
-.+|||||+=.++ ||..+-.+ -+.++|||||..||+++-..+.++|..+.. +++||+|||.-+....+|.+
T Consensus 813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~ 892 (908)
T COG0419 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVR 892 (908)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeE
Confidence 3589999988555 45555667 799999999999999999999999988765 59999999999999999999
Q ss_pred EEEeCC
Q 006489 605 AVVSDG 610 (643)
Q Consensus 605 ivl~~G 610 (643)
+.++..
T Consensus 893 i~V~k~ 898 (908)
T COG0419 893 IRVKKD 898 (908)
T ss_pred EEEEec
Confidence 998654
No 493
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.21 E-value=2.4e-06 Score=81.79 Aligned_cols=61 Identities=25% Similarity=0.327 Sum_probs=45.8
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEE-----------CCEeCCCCCHHHHh-----cccEEEccCCCCCc
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFYDPIKGKILL-----------NGVPLVEISHEHLH-----RKISIVSQEPVLFN 486 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~i-----------dg~~i~~~~~~~lr-----~~i~~V~Q~~~Lf~ 486 (643)
|+.++|+|+||||||||++.|++.+.+. |.+.+ +|.+....+.+++. +.++.+.|...++.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSY 77 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccc
Confidence 6789999999999999999999987653 55544 67777767766653 34788888765443
No 494
>PTZ00035 Rad51 protein; Provisional
Probab=98.20 E-value=6.6e-06 Score=86.61 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=58.9
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcCCC-C-----CCCEE-EECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHh
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERFYD-P-----IKGKI-LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENI 493 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~~~-p-----~~G~I-~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI 493 (643)
=+++|+.+.|+|++|||||||+..++.... | ..|.+ +||+.+. ++++. +..+.|.+-+...++.+||
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~--f~~er----i~~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT--FRPER----IVQIAERFGLDPEDVLDNI 187 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC--CCHHH----HHHHHHHhCCChHhHhhce
Confidence 488999999999999999999999886554 3 45666 8888543 44444 3444666667777899999
Q ss_pred hcCCCCCCCHHHHHHHH
Q 006489 494 AYGCDGKASSADIENAA 510 (643)
Q Consensus 494 ~~~~~~~~~~~~i~~al 510 (643)
.+..+ ++.++..+.+
T Consensus 188 ~~~~~--~~~e~~~~~l 202 (337)
T PTZ00035 188 AYARA--YNHEHQMQLL 202 (337)
T ss_pred EEEcc--CCHHHHHHHH
Confidence 88843 5555444433
No 495
>PRK15494 era GTPase Era; Provisional
Probab=98.20 E-value=9.8e-07 Score=93.27 Aligned_cols=57 Identities=19% Similarity=0.206 Sum_probs=51.1
Q ss_pred CCCCCcEEEEeEEEECCCCCCCcceeceeEEeeCCC-------EEEEECCCCChHHHHHHHHHcCC
Q 006489 391 GDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGS-------KIALVGPSGGGKSTIANLIERFY 449 (643)
Q Consensus 391 ~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~-------~vaivG~sGsGKSTLl~lL~g~~ 449 (643)
+...|.+++++++|+||. .++.++.+++++++|+ +|+|||++|+|||||++.|.|..
T Consensus 13 ~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 13 EEFKGDTEALAAAVREDA--STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hhhCCccccccccccCCC--CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 345688999999999994 4679999999999999 99999999999999999998864
No 496
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.20 E-value=6.1e-06 Score=93.85 Aligned_cols=109 Identities=20% Similarity=0.250 Sum_probs=66.8
Q ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCC--------EEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhhcC
Q 006489 425 GSKIALVGPSGGGKSTIANLIERFYDPIKG--------KILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYG 496 (643)
Q Consensus 425 G~~vaivG~sGsGKSTLl~lL~g~~~p~~G--------~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~~~ 496 (643)
.+.+.|+||+|+|||||++++.++..+..| -|.+||.++. .+...+ .|-.++
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i-------------------~~~llg 234 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREV-------------------TNPLLG 234 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHH-------------------hHHhcC
Confidence 456999999999999999999998865444 4888886552 222221 122233
Q ss_pred CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccCCCCHHHHHHHH
Q 006489 497 CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQ 576 (643)
Q Consensus 497 ~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQrQRialARAl~~~p~IliLDE~TSaLD~~te~~i~ 576 (643)
...+...+...+.+...++.+....+ -..+||| +|+||| +..||......+.
T Consensus 235 ~~~~~~~~~a~~~l~~~gl~~~~~g~-----------v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll 286 (615)
T TIGR02903 235 SVHDPIYQGARRDLAETGVPEPKTGL-----------VTDAHGG----------------VLFIDE-IGELDPLLQNKLL 286 (615)
T ss_pred CccHHHHHHHHHHHHHcCCCchhcCc-----------hhhcCCC----------------eEEEec-cccCCHHHHHHHH
Confidence 11000011223334444443322111 1245666 999999 7999999988888
Q ss_pred HHHHH
Q 006489 577 DAMDS 581 (643)
Q Consensus 577 ~~i~~ 581 (643)
+.+++
T Consensus 287 ~~Le~ 291 (615)
T TIGR02903 287 KVLED 291 (615)
T ss_pred HHHhh
Confidence 88864
No 497
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.19 E-value=1.4e-06 Score=93.90 Aligned_cols=102 Identities=22% Similarity=0.275 Sum_probs=74.3
Q ss_pred cceeceeEEeeCCCEEEEECCCCChHHHHHHHHHcCCCC-CCCEEEE---CCEeCCCCCHHHHh---cccEEE-----cc
Q 006489 413 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKILL---NGVPLVEISHEHLH---RKISIV-----SQ 480 (643)
Q Consensus 413 ~vL~~isl~i~~G~~vaivG~sGsGKSTLl~lL~g~~~p-~~G~I~i---dg~~i~~~~~~~lr---~~i~~V-----~Q 480 (643)
.+++++ |++.+||+++|+|+||||||||++.|+|+.++ ..|.|.. +|.++.++..+.++ .+.++| +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 367877 99999999999999999999999999998844 4466766 55777777666665 346666 89
Q ss_pred CCC------CCcccHHHHhhcCCCCC----C-CHHHHHHHHHHcCch
Q 006489 481 EPV------LFNCSIEENIAYGCDGK----A-SSADIENAAKMANAH 516 (643)
Q Consensus 481 ~~~------Lf~gTireNI~~~~~~~----~-~~~~i~~al~~a~l~ 516 (643)
+|. ....+|.|.+..-.. + . +..++.+|++.+++.
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~-~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGK-TVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCC-CcchhhhHHHHHHHHHHHhCcC
Confidence 764 244578888754321 2 1 345677888888773
No 498
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.18 E-value=2.8e-06 Score=83.60 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=49.3
Q ss_pred eCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcc---cH--HHHhhcCC
Q 006489 423 LSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC---SI--EENIAYGC 497 (643)
Q Consensus 423 ~~G~~vaivG~sGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g---Ti--reNI~~~~ 497 (643)
+++..|+|+|+||||||||++.|.+.++ ...+.+++||.+.++. +. +.++.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------------~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~ 62 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------------DESIAVIPQDSYYKDQSHLSFEERVKTNYDH 62 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------------CCceEEEeCCccccCcccCCHHHhcccCccC
Confidence 4678999999999999999999999872 1268888999887754 23 34455555
Q ss_pred CCCCCHHHHHHHHHH
Q 006489 498 DGKASSADIENAAKM 512 (643)
Q Consensus 498 ~~~~~~~~i~~al~~ 512 (643)
|...+.+.+.+.++.
T Consensus 63 ~~~~~~~~l~~~l~~ 77 (209)
T PRK05480 63 PDAFDHDLLIEHLKA 77 (209)
T ss_pred cccccHHHHHHHHHH
Confidence 434455556655544
No 499
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.18 E-value=8.4e-07 Score=81.05 Aligned_cols=74 Identities=34% Similarity=0.495 Sum_probs=55.9
Q ss_pred EEEECCCCChHHHHHHHHHcCCCC-------------CCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHhh
Q 006489 428 IALVGPSGGGKSTIANLIERFYDP-------------IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIA 494 (643)
Q Consensus 428 vaivG~sGsGKSTLl~lL~g~~~p-------------~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI~ 494 (643)
++|+||||||||||++.|++.+++ ..|+ ++|++..-++.+.+++. +.|+.++..++...| .
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~-~ 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN-Y 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-E
Confidence 789999999999999999999764 3444 47888877788887764 567888888888888 4
Q ss_pred cCCCCCCCHHHHHHHHH
Q 006489 495 YGCDGKASSADIENAAK 511 (643)
Q Consensus 495 ~~~~~~~~~~~i~~al~ 511 (643)
+|.+ .+.+.++.+
T Consensus 76 yg~~----~~~i~~~~~ 88 (137)
T cd00071 76 YGTS----KAAVEEALA 88 (137)
T ss_pred ecCc----HHHHHHHHh
Confidence 6633 445555443
No 500
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.18 E-value=7.1e-06 Score=82.22 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=52.6
Q ss_pred EeeCCCEEEEECCCCChHHHHHHHHHcC-CCC------CCCEEEECCEeCCCCCHHHHhcccEEEccCCCCCcccHHHHh
Q 006489 421 KLLSGSKIALVGPSGGGKSTIANLIERF-YDP------IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENI 493 (643)
Q Consensus 421 ~i~~G~~vaivG~sGsGKSTLl~lL~g~-~~p------~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTireNI 493 (643)
=+++|+.+.|+|++|||||||+..++.. ..| .++.++|++.+ .++.+.+.+.. |..-....++.+|+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~----~~~~~~~~~~~~~i 88 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIA----ERFGLDPEEVLDNI 88 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHH----HHhccChHhHhcCE
Confidence 3889999999999999999999988633 233 37889998865 33444443322 11111234677888
Q ss_pred hcCCCCCCCHHHHHHHH
Q 006489 494 AYGCDGKASSADIENAA 510 (643)
Q Consensus 494 ~~~~~~~~~~~~i~~al 510 (643)
.+..+ .+.+++.+.+
T Consensus 89 ~~~~~--~~~~~l~~~l 103 (235)
T cd01123 89 YVARA--YNSDHQLQLL 103 (235)
T ss_pred EEEec--CCHHHHHHHH
Confidence 77643 4444444433
Done!